-- dump date 20140620_042200 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 761193000001 SEQ_END SEQ_END NC_015693.1 106999 106999 DR NC_015693.1; contig end 106999..106999 Runella slithyformis DSM 19594 761193000002 SEQ_END SEQ_END NC_015694.1 66926 66926 DR NC_015694.1; contig end 66926..66926 Runella slithyformis DSM 19594 761193000003 SEQ_END SEQ_END NC_015695.1 38784 38784 DR NC_015695.1; contig end 38784..38784 Runella slithyformis DSM 19594 761193000004 SEQ_END SEQ_END NC_015703.1 6568739 6568739 DR NC_015703.1; contig end 6568739..6568739 Runella slithyformis DSM 19594 761193000005 SEQ_END SEQ_END NC_015704.1 93527 93527 DR NC_015704.1; contig end 93527..93527 Runella slithyformis DSM 19594 761193000006 SEQ_END SEQ_END NC_015705.1 44754 44754 DR NC_015705.1; contig end 44754..44754 Runella slithyformis DSM 19594 YP_004646344.1 CDS Runsl_5648 NC_015693.1 153 2702 R COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107:IPR002104; KEGG: sli:Slin_6972 integrase family protein; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Integrase family protein; alpha-L-fucosidase complement(153..2702) Runella slithyformis DSM 19594 10860949 YP_004646345.1 CDS Runsl_5649 NC_015693.1 3561 4529 D PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR006584:IPR003088:IPR005084; KEGG: sli:Slin_3440 PKD domain containing protein; PFAM: PKD; Cytochrome c, class I; Carbohydrate binding domain, family 6; SMART: PKD; Cellulose binding, type IV; SPTR: PKD domain containing protein; integrase family protein 3561..4529 Runella slithyformis DSM 19594 10860862 YP_004646346.1 CDS Runsl_5650 NC_015693.1 6136 8727 D PFAM: Cytochrome c; Glucose / Sorbosone dehydrogenase; Carbohydrate binding module (family 6); PKD domain; PKD domain-containing protein 6136..8727 Runella slithyformis DSM 19594 10860863 YP_004646347.1 CDS Runsl_5651 NC_015693.1 8992 9174 D KEGG: sli:Slin_3883 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 8992..9174 Runella slithyformis DSM 19594 10860864 YP_004646348.1 CDS Runsl_5652 NC_015693.1 9157 10665 R KEGG: sli:Slin_3884 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(9157..10665) Runella slithyformis DSM 19594 10860865 YP_004646349.1 CDS Runsl_5653 NC_015693.1 10730 11035 R COGs: COG0680 Ni Fe-hydrogenase maturation factor; InterPro IPR000671; KEGG: sli:Slin_3885 hydrogenase maturation protease; PFAM: Peptidase A31, hydrogen uptake protein; SPTR: Hydrogenase maturation protease; TIGRFAM: Peptidase A31, hydrogen uptake protein; manually curated; hypothetical protein complement(10730..11035) Runella slithyformis DSM 19594 10860866 YP_004646350.1 CDS Runsl_5654 NC_015693.1 11032 11502 R PFAM: Hydrogenase maturation protease; TIGRFAM: hydrogenase maturation protease; COGs: COG0374 Ni Fe-hydrogenase I large subunit; InterPro IPR001501; KEGG: sli:Slin_3886 nickel-dependent hydrogenase large subunit; PFAM: Nickel-dependent hydrogenase, large subunit; PRIAM: Cytochrome-c3 hydrogenase; SPTR: Nickel-dependent hydrogenase large subunit; hydrogenase maturation protease complement(11032..11502) Runella slithyformis DSM 19594 10860867 YP_004646351.1 CDS Runsl_5655 NC_015693.1 11600 13195 R PFAM: Nickel-dependent hydrogenase; COGs: COG1740 Ni Fe-hydrogenase I small subunit; InterPro IPR006137; KEGG: sli:Slin_3887 NADH ubiquinone oxidoreductase 20 kDa subunit; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; PRIAM: Hydrogenase (acceptor); SPTR: NADH ubiquinone oxidoreductase 20 kDa subunit; Cytochrome-c3 hydrogenase complement(11600..13195) Runella slithyformis DSM 19594 10860868 YP_004646352.1 CDS Runsl_5656 NC_015693.1 13246 14229 R PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: hydrogenase (NiFe) small subunit (hydA); COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: sli:Slin_3888 TetR family transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; Hydrogenase (acceptor) complement(13246..14229) Runella slithyformis DSM 19594 10860869 YP_004646353.1 CDS Runsl_5657 NC_015693.1 14395 15015 R PFAM: Bacterial regulatory proteins, tetR family; KEGG: sli:Slin_3889 hypothetical protein; SPTR: Putative uncharacterized protein; TetR family transcriptional regulator complement(14395..15015) Runella slithyformis DSM 19594 10860870 YP_004646354.1 CDS Runsl_5658 NC_015693.1 15022 15381 R InterPro IPR001647; KEGG: rbi:RB2501_04325 putative transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; hypothetical protein complement(15022..15381) Runella slithyformis DSM 19594 10860871 YP_004646355.1 CDS Runsl_5659 NC_015693.1 15447 16079 R PFAM: Bacterial regulatory proteins, tetR family; COGs: COG1259 conserved hypothetical protein; InterPro IPR003729; KEGG: sli:Slin_3873 hypothetical protein; PFAM: Protein of unknown function DUF151; SPTR: Putative uncharacterized protein; regulatory protein TetR complement(15447..16079) Runella slithyformis DSM 19594 10860872 YP_004646356.1 CDS Runsl_5660 NC_015693.1 16089 16634 R PFAM: Uncharacterised ACR, COG1259; KEGG: sli:Slin_3874 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(16089..16634) Runella slithyformis DSM 19594 10860873 YP_004646357.1 CDS Runsl_5661 NC_015693.1 16681 16905 R InterPro IPR001258; KEGG: sli:Slin_3876 NHL repeat containing protein; PFAM: NHL repeat; SPTR: NHL repeat containing protein; hypothetical protein complement(16681..16905) Runella slithyformis DSM 19594 10860874 YP_004646358.1 CDS Runsl_5662 NC_015693.1 16919 18031 R COGs: COG0309 Hydrogenase maturation factor; InterPro IPR011854:IPR000728:IPR010918; KEGG: sli:Slin_3877 hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; SPTR: Hydrogenase expression/formation protein HypE; TIGRFAM: Hydrogenase expression/formation protein HypE; NHL repeat containing protein complement(16919..18031) Runella slithyformis DSM 19594 10860875 YP_004646359.1 CDS Runsl_5663 NC_015693.1 18103 19140 R PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: hydrogenase expression/formation protein HypE; COGs: COG0409 Hydrogenase maturation factor; InterPro IPR002780; KEGG: sli:Slin_3878 hydrogenase expression/formation protein HypD; PFAM: Hydrogenase formation HypD protein; SPTR: Hydrogenase expression/formation protein HypD; TIGRFAM: Hydrogenase formation HypD protein; hydrogenase expression/formation protein HypE complement(18103..19140) Runella slithyformis DSM 19594 10860876 YP_004646360.1 CDS Runsl_5664 NC_015693.1 19242 20336 R PFAM: Hydrogenase formation hypA family; TIGRFAM: hydrogenase expression/formation protein HypD; COGs: COG0298 Hydrogenase maturation factor; InterPro IPR001109; KEGG: sli:Slin_3879 hydrogenase assembly chaperone HypC/HupF; PFAM: Hydrogenase expression/formation protein, HupF/HypC; SPTR: Hydrogenase assembly chaperone hypC/hupF; TIGRFAM: Hydrogenase expression/formation protein, HupF/HypC; hydrogenase expression/formation protein HypD complement(19242..20336) Runella slithyformis DSM 19594 10860877 YP_004646361.1 CDS Runsl_5665 NC_015693.1 20372 20647 R PFAM: HupF/HypC family; TIGRFAM: hydrogenase assembly chaperone HypC/HupF; COGs: COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatase; InterPro IPR003672; KEGG: gur:Gura_0774 cobaltochelatase; PFAM: CobN/magnesium chelatase; PRIAM: Magnesium chelatase; SPTR: Cobaltochelatase CobN subunit; hydrogenase assembly chaperone hypC/hupF complement(20372..20647) Runella slithyformis DSM 19594 10860878 YP_004646362.1 CDS Runsl_5666 NC_015693.1 20786 24778 R PFAM: CobN/Magnesium Chelatase; COGs: COG4744 conserved hypothetical protein; InterPro IPR018676; KEGG: dpr:Despr_3126 hypothetical protein; PFAM: Protein of unknown function DUF2149; SPTR: Putative uncharacterized protein; Magnesium chelatase complement(20786..24778) Runella slithyformis DSM 19594 10860879 YP_004646363.1 CDS Runsl_5667 NC_015693.1 24807 25163 R PFAM: Uncharacterized conserved protein (DUF2149); KEGG: mmz:MmarC7_1200 MotA/TolQ/ExbB proton channel; SPTR: Hypothetical membrane protein, MotA/TolQ/ExbB proton channel family; hypothetical protein complement(24807..25163) Runella slithyformis DSM 19594 10860880 YP_004646364.1 CDS Runsl_5668 NC_015693.1 25211 25774 R PFAM: MotA/TolQ/ExbB proton channel family; KEGG: sli:Slin_3875 urease accessory protein; SPTR: Putative urease accessory protein; MotA/TolQ/ExbB proton channel complement(25211..25774) Runella slithyformis DSM 19594 10860881 YP_004646365.1 CDS Runsl_5669 NC_015693.1 25873 26499 R PFAM: High-affinity nickel-transport protein; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_5364 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; urease accessory protein complement(25873..26499) Runella slithyformis DSM 19594 10860882 YP_004646366.1 CDS Runsl_5670 NC_015693.1 26568 28820 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG0068 Hydrogenase maturation factor; InterPro IPR004421:IPR001792:IPR011125:IPR006070; KEGG: sli:Slin_3880 (NiFe) hydrogenase maturation protein HypF; PFAM: Sua5/YciO/YrdC, N-terminal; Acylphosphatase-like; Zinc finger, HypF-type; SPTR: (NiFe) hydrogenase maturation protein HypF; TIGRFAM: Hydrogenase maturation factor, HypF-type; TonB-dependent receptor complement(26568..28820) Runella slithyformis DSM 19594 10860883 YP_004646367.1 CDS Runsl_5671 NC_015693.1 28903 31257 R PFAM: HypF finger; yrdC domain; Acylphosphatase; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; COGs: COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; InterPro IPR004392:IPR003495; KEGG: sli:Slin_3881 hydrogenase accessory protein HypB; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; SPTR: Hydrogenase accessory protein HypB; TIGRFAM: Hydrogenase accessory protein HypB; (NiFe) hydrogenase maturation protein HypF complement(28903..31257) Runella slithyformis DSM 19594 10860884 YP_004646368.1 CDS Runsl_5672 NC_015693.1 31259 31960 R PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: hydrogenase accessory protein HypB; COGs: COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); InterPro IPR000688; KEGG: sli:Slin_3882 hydrogenase expression/synthesis HypA; PFAM: Hydrogenase nickel incorporation protein HypA/HybF; SPTR: Hydrogenase expression/synthesis HypA; hydrogenase accessory protein HypB complement(31259..31960) Runella slithyformis DSM 19594 10860885 YP_004646369.1 CDS Runsl_5673 NC_015693.1 31999 32340 R PFAM: Hydrogenase expression/synthesis hypA family; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: cbe:Cbei_3584 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1; SPTR: Proline iminopeptidase-like protein; hydrogenase expression/synthesis HypA complement(31999..32340) Runella slithyformis DSM 19594 10860886 YP_004646370.1 CDS Runsl_5674 NC_015693.1 32834 33910 D PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 32834..33910 Runella slithyformis DSM 19594 10860887 YP_004646371.1 CDS Runsl_5675 NC_015693.1 33966 34550 D COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: npu:Npun_F0634 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; hypothetical protein 33966..34550 Runella slithyformis DSM 19594 10860888 YP_004646372.1 CDS Runsl_5676 NC_015693.1 34563 35750 D PFAM: Beta-lactamase; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sus:Acid_0065 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase, putative; beta-lactamase 34563..35750 Runella slithyformis DSM 19594 10860889 YP_004646373.1 CDS Runsl_5677 NC_015693.1 35852 37366 D PFAM: Beta-lactamase; KEGG: sli:Slin_2780 hypothetical protein; SPTR: Putative uncharacterized protein; beta-lactamase 35852..37366 Runella slithyformis DSM 19594 10860890 YP_004646374.1 CDS Runsl_5678 NC_015693.1 37491 38351 D TIGRFAM: YD repeat (two copies); COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_1794 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; hypothetical protein 37491..38351 Runella slithyformis DSM 19594 10860891 YP_004646375.1 CDS Runsl_5679 NC_015693.1 38455 39219 D PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_4868 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; LytTR family two component transcriptional regulator 38455..39219 Runella slithyformis DSM 19594 10860892 YP_004646376.1 CDS Runsl_5680 NC_015693.1 39252 40304 D PFAM: Histidine kinase; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_4868 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; putative signal transduction histidine kinase 39252..40304 Runella slithyformis DSM 19594 10860893 YP_004646377.1 CDS Runsl_5681 NC_015693.1 40301 41341 D PFAM: Histidine kinase; COGs: COG0684 Demethylmenaquinone methyltransferase; InterPro IPR005493; KEGG: caa:Caka_0515 dimethylmenaquinone methyltransferase; PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; SPTR: Putative uncharacterized protein; putative signal transduction histidine kinase 40301..41341 Runella slithyformis DSM 19594 10860894 YP_004646378.1 CDS Runsl_5682 NC_015693.1 41692 42435 R PFAM: Demethylmenaquinone methyltransferase; COGs: COG3386 Gluconolactonase; InterPro IPR013658; KEGG: ttr:Tter_2396 SMP-30/gluconolaconase/LRE domain protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; SPTR: Possible Gluconolactonase; Dimethylmenaquinone methyltransferase complement(41692..42435) Runella slithyformis DSM 19594 10860895 YP_004646379.1 CDS Runsl_5683 NC_015693.1 42489 43307 R PFAM: SMP-30/Gluconolaconase/LRE-like region; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: phe:Phep_2598 major facilitator superfamily protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Putative uncharacterized protein; SMP-30/gluconolaconase/LRE-like region-containing protein complement(42489..43307) Runella slithyformis DSM 19594 10860896 YP_004646380.1 CDS Runsl_5684 NC_015693.1 43310 44575 R PFAM: Major Facilitator Superfamily; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104; KEGG: dtu:Dtur_1802 beta-mannosidase; PFAM: Glycoside hydrolase family 2, carbohydrate-binding; PRIAM: Beta-mannosidase; SPTR: Putative uncharacterized protein; major facilitator superfamily protein complement(43310..44575) Runella slithyformis DSM 19594 10860897 YP_004646381.1 CDS Runsl_5685 NC_015693.1 44572 47475 R PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: psa:PST_3895 short chain dehydrogenase/reductase family oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Oxidoreductase, short-chain dehydrogenase/reductase family; beta-mannosidase complement(44572..47475) Runella slithyformis DSM 19594 10860898 YP_004646382.1 CDS Runsl_5686 NC_015693.1 47513 48304 R PFAM: short chain dehydrogenase; KEGG: coc:Coch_1013 hypothetical protein; SPTR: Putative uncharacterized protein; 3-oxoacyl-(acyl-carrier-protein) reductase complement(47513..48304) Runella slithyformis DSM 19594 10860899 YP_004646383.1 CDS Runsl_5687 NC_015693.1 48306 49733 R PFAM: Cellulase (glycosyl hydrolase family 5); COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341:IPR013342; KEGG: smd:Smed_5845 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; PRIAM: Glucarate dehydratase; SPTR: Mandelate racemase/muconate lactonizing protein; hypothetical protein complement(48306..49733) Runella slithyformis DSM 19594 10860900 YP_004646384.1 CDS Runsl_5688 NC_015693.1 49745 50935 R PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; COGs: COG3693 Beta-1 4-xylanase; InterPro IPR001000; KEGG: ote:Oter_3662 glycoside hydrolase family protein; PFAM: Glycoside hydrolase, family 10; SMART: Glycoside hydrolase, family 10; SPTR: Glycoside hydrolase family 10; glucarate dehydratase complement(49745..50935) Runella slithyformis DSM 19594 10860901 YP_004646385.1 CDS Runsl_5689 NC_015693.1 50967 52295 R PFAM: Glycosyl hydrolase family 10; KEGG: plm:Plim_0289 hypothetical protein; SPTR: Putative uncharacterized protein; glycoside hydrolase family 10 complement(50967..52295) Runella slithyformis DSM 19594 10860902 YP_004646386.1 CDS Runsl_5690 NC_015693.1 52300 53190 R InterPro IPR012944; KEGG: dfe:Dfer_0713 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; hypothetical protein complement(52300..53190) Runella slithyformis DSM 19594 10860903 YP_004646387.1 CDS Runsl_5691 NC_015693.1 53196 54656 R PFAM: SusD family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_0714 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; RagB/SusD domain-containing protein complement(53196..54656) Runella slithyformis DSM 19594 10860904 YP_004646388.1 CDS Runsl_5692 NC_015693.1 54721 57708 R PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG1414 Transcriptional regulator; InterPro IPR005471; KEGG: psn:Pedsa_0488 transcriptional regulator, IclR family; PFAM: Transcriptional regulator IclR, N-terminal; SMART: Transcriptional regulator IclR, N-terminal; SPTR: Putative uncharacterized protein; TonB-dependent receptor plug complement(54721..57708) Runella slithyformis DSM 19594 10860905 YP_004646389.1 CDS Runsl_5693 NC_015693.1 57900 58637 R PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator; IclR family transcriptional regulator complement(57900..58637) Runella slithyformis DSM 19594 10860906 YP_004646390.1 CDS Runsl_5694 NC_015693.1 58758 58925 D hypothetical protein 58758..58925 Runella slithyformis DSM 19594 10860907 YP_004646391.1 CDS Runsl_5695 NC_015693.1 58896 59408 R hypothetical protein complement(58896..59408) Runella slithyformis DSM 19594 10860908 YP_004646392.1 CDS Runsl_5696 NC_015693.1 59748 60383 D COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627; KEGG: pbs:Plabr_0594 RNA polymerase, sigma subunit, ECF family; PFAM: RNA polymerase sigma-70 region 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; hypothetical protein 59748..60383 Runella slithyformis DSM 19594 10860909 YP_004646393.1 CDS Runsl_5697 NC_015693.1 60388 61200 D PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; manually curated; ECF subfamily RNA polymerase sigma-24 subunit 60388..61200 Runella slithyformis DSM 19594 10860910 YP_004646394.1 CDS Runsl_5699 NC_015693.1 61408 61563 D KEGG: sli:Slin_3648 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 61408..61563 Runella slithyformis DSM 19594 10860912 YP_004646395.1 CDS Runsl_5700 NC_015693.1 61918 62757 R COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: sli:Slin_3649 cobyrinic acid ac-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Cobyrinic acid ac-diamide synthase; hypothetical protein complement(61918..62757) Runella slithyformis DSM 19594 10860913 YP_004646396.1 CDS Runsl_5701 NC_015693.1 62771 63715 R PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; COGs: COG5527 Protein involved in initiation of plasmid replication; InterPro IPR000525; KEGG: sli:Slin_7066 initiator RepB protein; PFAM: Initiator Rep protein; SPTR: Initiator RepB protein; Cobyrinic acid ac-diamide synthase complement(62771..63715) Runella slithyformis DSM 19594 10860914 YP_004646397.1 CDS Runsl_5702 NC_015693.1 64365 65267 D PFAM: Initiator Replication protein; manually curated; initiator RepB protein 64365..65267 Runella slithyformis DSM 19594 10860915 YP_004646398.1 CDS Runsl_5706 NC_015693.1 66551 66790 R COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: dfe:Dfer_3737 AAA ATPase; SMART: ATPase, AAA+ type, core; SPTR: AAA ATPase; hypothetical protein complement(66551..66790) Runella slithyformis DSM 19594 10860919 YP_004646399.1 CDS Runsl_5707 NC_015693.1 67009 68181 D AAA ATPase 67009..68181 Runella slithyformis DSM 19594 10860920 YP_004646400.1 CDS Runsl_5708 NC_015693.1 68429 68749 D hypothetical protein 68429..68749 Runella slithyformis DSM 19594 10860921 YP_004646401.1 CDS Runsl_5709 NC_015693.1 68741 69037 R COGs: COG2141 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase; InterPro IPR016048; KEGG: sli:Slin_3890 luciferase-like protein; PFAM: Luciferase-like, subgroup; SPTR: Luciferase-like, subgroup; TIGRFAM: putative oxidoreductase, LLM family; hypothetical protein complement(68741..69037) Runella slithyformis DSM 19594 10860922 YP_004646402.1 CDS Runsl_5710 NC_015693.1 69501 70529 R PFAM: Luciferase-like monooxygenase; TIGRFAM: probable oxidoreductase, LLM family; putative oxidoreductase, LLM family complement(69501..70529) Runella slithyformis DSM 19594 10860923 YP_004646403.1 CDS Runsl_5711 NC_015693.1 70906 71082 R COGs: COG2603 ATPase; InterPro IPR017582:IPR001763; KEGG: sli:Slin_4991 tRNA 2-selenouridine synthase; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: tRNA 2-selenouridine synthase; TIGRFAM: tRNA 2-selenouridine synthase; hypothetical protein complement(70906..71082) Runella slithyformis DSM 19594 10860924 YP_004646404.1 CDS Runsl_5712 NC_015693.1 71199 72242 D PFAM: Rhodanese-like domain; TIGRFAM: tRNA 2-selenouridine synthase; COGs: COG0709 Selenophosphate synthase; HAMAP: Selenide, water dikinase; InterPro IPR004536:IPR000728:IPR010918; KEGG: sli:Slin_3011 selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal; SPTR: Selenide, water dikinase; TIGRFAM: Selenide water dikinase; tRNA 2-selenouridine synthase 71199..72242 Runella slithyformis DSM 19594 10860925 YP_004646405.1 CDS Runsl_5713 NC_015693.1 72252 73292 D PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: selenium donor protein; KEGG: sli:Slin_0591 hypothetical protein; SPTR: Putative uncharacterized protein; Selenide, water dikinase 72252..73292 Runella slithyformis DSM 19594 10860926 YP_004646406.1 CDS Runsl_5714 NC_015693.1 73496 74473 D PFAM: Trehalose utilisation; KEGG: plm:Plim_4136 hypothetical protein; SPTR: Acyl-CoA thioesterase I-like protein; hypothetical protein 73496..74473 Runella slithyformis DSM 19594 10860927 YP_004646407.1 CDS Runsl_5715 NC_015693.1 74536 75786 D hypothetical protein 74536..75786 Runella slithyformis DSM 19594 10860928 YP_004646408.1 CDS Runsl_5716 NC_015693.1 75826 75963 D COGs: COG0642 Signal transduction histidine kinase; InterPro IPR000014:IPR001610:IPR003661:IPR003594:IPR013767:IPR0136 55:IPR013656; KEGG: sli:Slin_0618 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-3; PAS fold; PAS fold-4; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; hypothetical protein 75826..75963 Runella slithyformis DSM 19594 10860929 YP_004646409.1 CDS Runsl_5717 NC_015693.1 75955 78996 R PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; KEGG: dfe:Dfer_2112 hypothetical protein; SPTR: Putative uncharacterized protein; PAS/PAC sensor signal transduction histidine kinase complement(75955..78996) Runella slithyformis DSM 19594 10860930 YP_004646410.1 CDS Runsl_5718 NC_015693.1 79450 79926 R InterPro IPR001077; KEGG: sli:Slin_6371 O-methyltransferase family 2; PFAM: O-methyltransferase, family 2; SPTR: O-methyltransferase family 2; hypothetical protein complement(79450..79926) Runella slithyformis DSM 19594 10860931 YP_004646411.1 CDS Runsl_5719 NC_015693.1 80162 81226 D PFAM: O-methyltransferase; COGs: COG1260 Myo-inositol-1-phosphate synthase; InterPro IPR002587:IPR013021; KEGG: cpi:Cpin_2400 inositol-3-phosphate synthase; PFAM: Myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase, GAPDH-like; PRIAM: Inositol-3-phosphate synthase; SPTR: Inositol-3-phosphate synthase; O-methyltransferase family 2 80162..81226 Runella slithyformis DSM 19594 10860932 YP_004646412.1 CDS Runsl_5720 NC_015693.1 81503 82840 D PFAM: Myo-inositol-1-phosphate synthase; InterPro IPR005181:IPR006104:IPR002509; KEGG: sli:Slin_1717 hypothetical protein; PFAM: Protein of unknown function DUF303, acetylesterase putative; Glycoside hydrolase family 2, carbohydrate-binding; Polysaccharide deacetylase; SPTR: Putative uncharacterized protein; Inositol-3-phosphate synthase 81503..82840 Runella slithyformis DSM 19594 10860933 YP_004646413.1 CDS Runsl_5721 NC_015693.1 83303 85975 R PFAM: Domain of unknown function (DUF303); Polysaccharide deacetylase; Glycosyl hydrolases family 2, sugar binding domain; COGs: COG3693 Beta-1 4-xylanase; InterPro IPR001000; KEGG: ppn:Palpr_2306 EndO-1,4-beta-xylanase; PFAM: Glycoside hydrolase, family 10; PRIAM: Endo-1,4-beta-xylanase; SMART: Glycoside hydrolase, family 10; SPTR: Endo-1,4-beta-xylanase; hypothetical protein complement(83303..85975) Runella slithyformis DSM 19594 10860934 YP_004646414.1 CDS Runsl_5722 NC_015693.1 86016 87158 R PFAM: Glycosyl hydrolase family 10; InterPro IPR006710; KEGG: cao:Celal_0855 xylan 1,4-beta-xylosidase; PFAM: Glycoside hydrolase, family 43; PRIAM: Xylan 1,4-beta-xylosidase; SPTR: Xylan 1,4-beta-xylosidase; endo-1,4-beta-xylanase complement(86016..87158) Runella slithyformis DSM 19594 10860935 YP_004646415.1 CDS Runsl_5723 NC_015693.1 87218 88252 R PFAM: Glycosyl hydrolases family 43; COGs: COG2211 Na+/melibiose symporter and related transporter; InterPro IPR001927:IPR011701; KEGG: fjo:Fjoh_1997 sugar (glycoside-pentoside-hexuronide) transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Sugar (Glycoside-Pentoside-Hexuronide) transporter; TIGRFAM: Sodium:galactoside symporter; Xylan 1,4-beta-xylosidase complement(87218..88252) Runella slithyformis DSM 19594 10860936 YP_004646416.1 CDS Runsl_5724 NC_015693.1 88437 89855 R PFAM: Major Facilitator Superfamily; TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; COGs: COG3693 Beta-1 4-xylanase; InterPro IPR001000; KEGG: sli:Slin_1404 endo-1,4-beta-xylanase; PFAM: Glycoside hydrolase, family 10; PRIAM: Endo-1,4-beta-xylanase; SMART: Glycoside hydrolase, family 10; SPTR: Endo-1,4-beta-xylanase; sugar (glycoside-Pentoside-Hexuronide) transporter complement(88437..89855) Runella slithyformis DSM 19594 10860937 YP_004646417.1 CDS Runsl_5725 NC_015693.1 90523 91626 R PFAM: Glycosyl hydrolase family 10; KEGG: ppn:Palpr_1422 hypothetical protein; SPTR: Putative uncharacterized protein; endo-1,4-beta-xylanase complement(90523..91626) Runella slithyformis DSM 19594 10860938 YP_004646418.1 CDS Runsl_5726 NC_015693.1 91702 92067 R COGs: COG2382 Enterochelin esterase; InterPro IPR000801:IPR004193; KEGG: sli:Slin_1407 esterase; PFAM: Putative esterase; Glycoside hydrolase, family 13, N-terminal; SPTR: Putative esterase; hypothetical protein complement(91702..92067) Runella slithyformis DSM 19594 10860939 YP_004646419.1 CDS Runsl_5727 NC_015693.1 92068 93993 R PFAM: Putative esterase; COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: sli:Slin_1411 esterase; PFAM: Putative esterase; SPTR: Putative esterase; esterase complement(92068..93993) Runella slithyformis DSM 19594 10860940 YP_004646420.1 CDS Runsl_5728 NC_015693.1 94020 95135 R PFAM: Putative esterase; COGs: COG2382 Enterochelin esterase; InterPro IPR004193:IPR000801; KEGG: sli:Slin_1412 esterase; PFAM: Putative esterase; Glycoside hydrolase, family 13, N-terminal; SPTR: Putative esterase; esterase complement(94020..95135) Runella slithyformis DSM 19594 10860941 YP_004646421.1 CDS Runsl_5729 NC_015693.1 95381 96460 R PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Putative esterase; COGs: COG2382 Enterochelin esterase; InterPro IPR004193:IPR000801; KEGG: sli:Slin_1413 esterase; PFAM: Putative esterase; Glycoside hydrolase, family 13, N-terminal; SPTR: Putative esterase; esterase complement(95381..96460) Runella slithyformis DSM 19594 10860942 YP_004646422.1 CDS Runsl_5730 NC_015693.1 96475 97638 R PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Putative esterase; COGs: COG2382 Enterochelin esterase; InterPro IPR004193:IPR000801; KEGG: sli:Slin_1414 esterase; PFAM: Putative esterase; Glycoside hydrolase, family 13, N-terminal; SPTR: Putative esterase; esterase complement(96475..97638) Runella slithyformis DSM 19594 10860943 YP_004646423.1 CDS Runsl_5731 NC_015693.1 97669 98787 R PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Putative esterase; COGs: COG2272 Carboxylesterase type B; InterPro IPR005181:IPR002018; KEGG: ppn:Palpr_1657 carboxylesterase type B; PFAM: Carboxylesterase, type B; Protein of unknown function DUF303, acetylesterase putative; PRIAM: Acetylcholinesterase; SPTR: Carboxylesterase type B; esterase complement(97669..98787) Runella slithyformis DSM 19594 10860944 YP_004646424.1 CDS Runsl_5732 NC_015693.1 98813 101173 R PFAM: Domain of unknown function (DUF303); Carboxylesterase; COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: sli:Slin_1420 glycoside hydrolase family 43; PFAM: Glycoside hydrolase, family 43; SPTR: Glycoside hydrolase family 43; acetylcholinesterase complement(98813..101173) Runella slithyformis DSM 19594 10860945 YP_004646425.1 CDS Runsl_5733 NC_015693.1 101293 102867 R PFAM: Glycosyl hydrolases family 43; COGs: COG3533 conserved hypothetical protein; InterPro IPR012878; KEGG: sli:Slin_1422 hypothetical protein; PFAM: Protein of unknown function DUF1680; SPTR: Putative uncharacterized protein; glycoside hydrolase family 43 complement(101293..102867) Runella slithyformis DSM 19594 10860946 YP_004646426.1 CDS Runsl_5734 NC_015693.1 102944 105226 R PFAM: Putative glycosyl hydrolase of unknown function (DUF1680); COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: sli:Slin_1423 xylan 1,4-beta-xylosidase; PFAM: Glycoside hydrolase, family 43; PRIAM: Alpha-N-arabinofuranosidase; SPTR: Xylan 1,4-beta-xylosidase; hypothetical protein complement(102944..105226) Runella slithyformis DSM 19594 10860947 YP_004646427.1 CDS Runsl_5735 NC_015693.1 105241 106914 R PFAM: Glycosyl hydrolases family 43; Signal predicted by SignalP 3.0 HMM; IMG reference gene:2505788930_SP; alpha-N-arabinofuranosidase complement(105241..106914) Runella slithyformis DSM 19594 10860948 YP_004646428.1 CDS Runsl_5814 NC_015694.1 1030 1659 D PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; Cobyrinic acid ac-diamide synthase 1030..1659 Runella slithyformis DSM 19594 10863083 YP_004646429.1 CDS Runsl_5815 NC_015694.1 1736 2005 D hypothetical protein 1736..2005 Runella slithyformis DSM 19594 10863014 YP_004646430.1 CDS Runsl_5816 NC_015694.1 2112 2513 R KEGG: dfe:Dfer_5228 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2112..2513) Runella slithyformis DSM 19594 10863082 YP_004646431.1 CDS Runsl_5817 NC_015694.1 2515 3282 R hypothetical protein complement(2515..3282) Runella slithyformis DSM 19594 10863015 YP_004646432.1 CDS Runsl_5818 NC_015694.1 3353 3715 R KEGG: pdi:BDI_2232 mobilization protein BmgB; SPTR: Mobilization protein BmgB; hypothetical protein complement(3353..3715) Runella slithyformis DSM 19594 10863016 YP_004646433.1 CDS Runsl_5819 NC_015694.1 4048 4392 D InterPro IPR005094; KEGG: pdi:BDI_2231 mobilization protein BmgA; PFAM: Endonuclease relaxase, MobA/VirD2; SPTR: Putative uncharacterized protein; mobilization protein BmgB 4048..4392 Runella slithyformis DSM 19594 10863017 YP_004646434.1 CDS Runsl_5820 NC_015694.1 4389 5408 D PFAM: Relaxase/Mobilisation nuclease domain; COGs: COG3549 Plasmid maintenance system killer protein; InterPro IPR007711; KEGG: dfe:Dfer_2504 plasmid maintenance system killer; PFAM: Plasmid maintenance system killer; SPTR: Plasmid maintenance system killer; Relaxase/mobilization nuclease family protein 4389..5408 Runella slithyformis DSM 19594 10863018 YP_004646435.1 CDS Runsl_5821 NC_015694.1 5855 6133 D PFAM: Plasmid maintenance system killer protein; COGs: COG3093 Plasmid maintenance system antidote protein; InterPro IPR013430:IPR001387; KEGG: dfe:Dfer_2505 XRE family plasmid maintenance system antidote protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Plasmid maintenance system antidote protein, XRE family; TIGRFAM: Addiction module antidote protein, HigA; plasmid maintenance system killer 5855..6133 Runella slithyformis DSM 19594 10863019 YP_004646436.1 CDS Runsl_5822 NC_015694.1 6149 6463 D PFAM: Helix-turn-helix; TIGRFAM: addiction module antidote protein, HigA family; plasmid maintenance system antidote protein, XRE family 6149..6463 Runella slithyformis DSM 19594 10863020 YP_004646437.1 CDS Runsl_5823 NC_015694.1 6661 7215 D hypothetical protein 6661..7215 Runella slithyformis DSM 19594 10863021 YP_004646438.1 CDS Runsl_5824 NC_015694.1 7243 7812 D hypothetical protein 7243..7812 Runella slithyformis DSM 19594 10863022 YP_004646439.1 CDS Runsl_5825 NC_015694.1 8202 8591 D hypothetical protein 8202..8591 Runella slithyformis DSM 19594 10863023 YP_004646440.1 CDS Runsl_5826 NC_015694.1 9025 9246 D hypothetical protein 9025..9246 Runella slithyformis DSM 19594 10863024 YP_004646441.1 CDS Runsl_5827 NC_015694.1 9382 9570 D COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: wvi:Weevi_1329 peptidase M23; PFAM: Peptidase M23; SPTR: NlpD; hypothetical protein 9382..9570 Runella slithyformis DSM 19594 10863025 YP_004646442.1 CDS Runsl_5828 NC_015694.1 9567 10103 D PFAM: Peptidase family M23; COGs: COG1864 DNA/RNA endonuclease G NUC1; InterPro IPR003961:IPR020821:IPR001604; KEGG: ava:Ava_4000 DNA/RNA non-specific endonuclease; PFAM: DNA/RNA non-specific endonuclease; Fibronectin, type III; SMART: Extracellular Endonuclease, subunit A; Fibronectin, type III; SPTR: DNA/RNA non-specific endonuclease; Peptidase M23 9567..10103 Runella slithyformis DSM 19594 10863026 YP_004646443.1 CDS Runsl_5829 NC_015694.1 10346 12361 D PFAM: DNA/RNA non-specific endonuclease; Fibronectin type III domain; COGs: COG3505 Type IV secretory pathway VirD4 protein; InterPro IPR003688; KEGG: psn:Pedsa_1580 hypothetical protein; PFAM: TRAG protein; SPTR: TraG family protein; DNA/RNA non-specific endonuclease 10346..12361 Runella slithyformis DSM 19594 10863027 YP_004646444.1 CDS Runsl_5830 NC_015694.1 12485 14491 R PFAM: TraG/TraD family; KEGG: bfs:pBF9343.47c putative plasmid transfer protein; SPTR: Conjugal transfer protein TraE; TRAG family protein complement(12485..14491) Runella slithyformis DSM 19594 10863028 YP_004646445.1 CDS Runsl_5831 NC_015694.1 14605 14925 D putative plasmid transfer protein 14605..14925 Runella slithyformis DSM 19594 10863029 YP_004646446.1 CDS Runsl_5832 NC_015694.1 14976 15323 D hypothetical protein 14976..15323 Runella slithyformis DSM 19594 10863030 YP_004646447.1 CDS Runsl_5833 NC_015694.1 15326 15754 D KEGG: lby:Lbys_0168 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 15326..15754 Runella slithyformis DSM 19594 10863031 YP_004646448.1 CDS Runsl_5834 NC_015694.1 15759 16067 D COGs: COG3451 Type IV secretory pathway VirB4 protein; KEGG: zpr:ZPR_3458 type IV secretory pathway VirB4 components-like protein; SPTR: Type IV secretory pathway VirB4 components-like protein; TIGRFAM: Bacteroides conjugation system ATPase, TraG family; hypothetical protein 15759..16067 Runella slithyformis DSM 19594 10863032 YP_004646449.1 CDS Runsl_5835 NC_015694.1 16064 18559 D PFAM: Domain of unknown function DUF87; TIGRFAM: Bacteroides conjugation system ATPase, TraG family; KEGG: psn:Pedsa_1679 hypothetical protein; SPTR: Putative uncharacterized protein; conjugation system ATPase, TraG family 16064..18559 Runella slithyformis DSM 19594 10863033 YP_004646450.1 CDS Runsl_5836 NC_015694.1 18598 19704 D KEGG: fjo:Fjoh_4353 TraJ family protein conjugative transposon; SPTR: Homologues of TraJ from Bacteroides conjugative transposon; hypothetical protein 18598..19704 Runella slithyformis DSM 19594 10863034 YP_004646451.1 CDS Runsl_5837 NC_015694.1 19683 20726 D PFAM: TrbL/VirB6 plasmid conjugal transfer protein; hypothetical protein 19683..20726 Runella slithyformis DSM 19594 10863035 YP_004646452.1 CDS Runsl_5838 NC_015694.1 20723 20956 D KEGG: bsa:Bacsa_2556 conjugative transposon TraK protein; SPTR: Conjugative transposon TraK protein; TIGRFAM: Bacteroides conjugative transposon TraK protein; hypothetical protein 20723..20956 Runella slithyformis DSM 19594 10863036 YP_004646453.1 CDS Runsl_5839 NC_015694.1 20922 21524 D TIGRFAM: Bacteroides conjugative transposon TraK protein; conjugative transposon TraK protein 20922..21524 Runella slithyformis DSM 19594 10863037 YP_004646454.1 CDS Runsl_5840 NC_015694.1 21524 21706 D KEGG: bsa:Bacsa_1115 conjugative transposon TraM protein; SPTR: Putative uncharacterized protein; hypothetical protein 21524..21706 Runella slithyformis DSM 19594 10863038 YP_004646455.1 CDS Runsl_5841 NC_015694.1 21694 23049 D PFAM: Protein of unknown function (DUF3714); TIGRFAM: Bacteroides conjugative transposon TraM protein; KEGG: bth:BT_2595 conjugate transposon protein; SPTR: Putative uncharacterized protein; TIGRFAM: Bacteroides conjugative transposon TraN protein; hypothetical protein 21694..23049 Runella slithyformis DSM 19594 10863039 YP_004646456.1 CDS Runsl_5842 NC_015694.1 23033 23956 D TIGRFAM: Bacteroides conjugative transposon TraN protein; KEGG: pgn:PGN_0593 putative conjugate transposon protein TraA; SPTR: TraO protein; conjugative transposon TraN protein 23033..23956 Runella slithyformis DSM 19594 10863040 YP_004646457.1 CDS Runsl_5843 NC_015694.1 23953 24528 D PFAM: Conjugative transposon protein TraO; putative conjugate transposon protein TraA 23953..24528 Runella slithyformis DSM 19594 10863041 YP_004646458.1 CDS Runsl_5844 NC_015694.1 24596 24745 R hypothetical protein complement(24596..24745) Runella slithyformis DSM 19594 10863042 YP_004646459.1 CDS Runsl_5845 NC_015694.1 24738 24887 R KEGG: pvi:Cvib_0123 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(24738..24887) Runella slithyformis DSM 19594 10863043 YP_004646460.1 CDS Runsl_5846 NC_015694.1 24959 25528 D PFAM: Protein of unknown function (DUF3127); InterPro IPR006119; KEGG: bsa:Bacsa_3704 resolvase domain; PFAM: Resolvase, N-terminal; SPTR: Putative uncharacterized protein; hypothetical protein 24959..25528 Runella slithyformis DSM 19594 10863044 YP_004646461.1 CDS Runsl_5847 NC_015694.1 25665 26225 D PFAM: Resolvase, N terminal domain; Resolvase domain-containing protein 25665..26225 Runella slithyformis DSM 19594 10863045 YP_004646462.1 CDS Runsl_5848 NC_015694.1 26552 26800 D KEGG: sli:Slin_3349 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 26552..26800 Runella slithyformis DSM 19594 10863046 YP_004646463.1 CDS Runsl_5849 NC_015694.1 26775 27335 D hypothetical protein 26775..27335 Runella slithyformis DSM 19594 10863047 YP_004646464.1 CDS Runsl_5850 NC_015694.1 27587 27772 R hypothetical protein complement(27587..27772) Runella slithyformis DSM 19594 10863048 YP_004646465.1 CDS Runsl_5851 NC_015694.1 27769 28008 R COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: bfr:BF3681 C-5 cytosine-specific DNA-methylase; PFAM: DNA methylase, C-5 cytosine-specific; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA methylase, C-5 cytosine-specific; hypothetical protein complement(27769..28008) Runella slithyformis DSM 19594 10863049 YP_004646466.1 CDS Runsl_5852 NC_015694.1 28188 29405 D PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); KEGG: cph:Cpha266_0081 hypothetical protein; SPTR: Putative uncharacterized protein; DNA-cytosine methyltransferase 28188..29405 Runella slithyformis DSM 19594 10863050 YP_004646467.1 CDS Runsl_5853 NC_015694.1 29402 30703 D hypothetical protein 29402..30703 Runella slithyformis DSM 19594 10863051 YP_004646468.1 CDS Runsl_5854 NC_015694.1 30687 30845 D KEGG: sli:Slin_2296 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 30687..30845 Runella slithyformis DSM 19594 10863052 YP_004646469.1 CDS Runsl_5855 NC_015694.1 30894 31283 D hypothetical protein 30894..31283 Runella slithyformis DSM 19594 10863053 YP_004646470.1 CDS Runsl_5856 NC_015694.1 31394 32164 D KEGG: bpt:Bpet4501 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 31394..32164 Runella slithyformis DSM 19594 10863054 YP_004646471.1 CDS Runsl_5857 NC_015694.1 32161 32562 D manually curated; hypothetical protein 32161..32562 Runella slithyformis DSM 19594 10863055 YP_004646472.1 CDS Runsl_5859 NC_015694.1 33700 34800 D PFAM: Metallo-beta-lactamase superfamily; InterPro IPR004027; KEGG: psn:Pedsa_1884 sec-C motif domain protein; PFAM: SEC-C motif; SPTR: SEC-C motif domain protein; hypothetical protein 33700..34800 Runella slithyformis DSM 19594 10863057 YP_004646473.1 CDS Runsl_5860 NC_015694.1 34775 35437 D PFAM: SEC-C motif; KEGG: sat:SYN_00502 hypothetical protein; SPTR: Putative uncharacterized protein; SEC-C motif domain-containing protein 34775..35437 Runella slithyformis DSM 19594 10863058 YP_004646474.1 CDS Runsl_5861 NC_015694.1 35441 36151 D COGs: COG2333 hydrolase (metallo-beta-lactamase superfamily); KEGG: aba:Acid345_1139 metallo-beta-lactamase superfamily hydrolase; SPTR: Hydrolase (Metallo-beta-lactamase superfamily); hypothetical protein 35441..36151 Runella slithyformis DSM 19594 10863059 YP_004646475.1 CDS Runsl_5862 NC_015694.1 36164 37195 D SPTR: Putative uncharacterized protein; metallo-beta-lactamase superfamily hydrolase 36164..37195 Runella slithyformis DSM 19594 10863060 YP_004646476.1 CDS Runsl_5863 NC_015694.1 37201 37611 D COGs: COG2333 hydrolase (metallo-beta-lactamase superfamily); KEGG: sbn:Sbal195_4563 beta-lactamase domain-containing protein; SPTR: Putative uncharacterized protein; hypothetical protein 37201..37611 Runella slithyformis DSM 19594 10863061 YP_004646477.1 CDS Runsl_5864 NC_015694.1 37905 38978 D PFAM: Metallo-beta-lactamase superfamily; KEGG: pgi:PG1202 hypothetical protein; SPTR: Putative uncharacterized protein; beta-lactamase domain-containing protein 37905..38978 Runella slithyformis DSM 19594 10863062 YP_004646478.1 CDS Runsl_5865 NC_015694.1 38971 43062 D COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119; KEGG: sli:Slin_7010 resolvase domain protein; PFAM: Resolvase, N-terminal; SPTR: Resolvase domain protein; hypothetical protein 38971..43062 Runella slithyformis DSM 19594 10863063 YP_004646479.1 CDS Runsl_5866 NC_015694.1 43272 43961 R PFAM: Resolvase, N terminal domain; KEGG: fjo:Fjoh_3055 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated; Resolvase domain-containing protein complement(43272..43961) Runella slithyformis DSM 19594 10863064 YP_004646480.1 CDS Runsl_5867 NC_015694.1 44339 44686 R InterPro IPR000594; KEGG: fjo:Fjoh_3056 hypothetical protein; PFAM: UBA/THIF-type NAD/FAD binding fold; SPTR: Uba/thif family NAD/fad binding fold protein; hypothetical protein complement(44339..44686) Runella slithyformis DSM 19594 10863065 YP_004646481.1 CDS Runsl_5868 NC_015694.1 44658 45845 R PFAM: ThiF family; KEGG: fjo:Fjoh_3057 hypothetical protein; SPTR: Putative uncharacterized protein; UBA/THIF-type NAD/FAD binding protein complement(44658..45845) Runella slithyformis DSM 19594 10863066 YP_004646482.1 CDS Runsl_5869 NC_015694.1 45820 46518 R KEGG: deh:cbdb_A103 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(45820..46518) Runella slithyformis DSM 19594 10863067 YP_004646483.1 CDS Runsl_5870 NC_015694.1 46831 47967 R hypothetical protein complement(46831..47967) Runella slithyformis DSM 19594 10863068 YP_004646484.1 CDS Runsl_5871 NC_015694.1 47970 48347 R KEGG: deh:cbdb_A102 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(47970..48347) Runella slithyformis DSM 19594 10863069 YP_004646485.1 CDS Runsl_5872 NC_015694.1 48344 50749 R KEGG: deh:cbdb_A101 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(48344..50749) Runella slithyformis DSM 19594 10863070 YP_004646486.1 CDS Runsl_5873 NC_015694.1 50746 51681 R InterPro IPR001387; KEGG: deh:cbdb_B6 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Putative uncharacterized protein; hypothetical protein complement(50746..51681) Runella slithyformis DSM 19594 10863071 YP_004646487.1 CDS Runsl_5874 NC_015694.1 51678 52076 R PFAM: Helix-turn-helix; KEGG: ypb:YPTS_3418 hypothetical protein; SPTR: Putative uncharacterized protein; helix-turn-helix domain-containing protein complement(51678..52076) Runella slithyformis DSM 19594 10863072 YP_004646488.1 CDS Runsl_5875 NC_015694.1 52392 52883 R InterPro IPR006530; KEGG: wvi:Weevi_0867 rhs repeat-associated core domain protein; PFAM: YD repeat; SPTR: Cell well associated RhsD protein; TIGRFAM: RHS repeat-associated core domain; YD repeat; hypothetical protein complement(52392..52883) Runella slithyformis DSM 19594 10863073 YP_004646489.1 CDS Runsl_5876 NC_015694.1 52880 59407 R TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies); KEGG: azc:AZC_2635 hypothetical protein; SPTR: Fibronectin type III domain protein; RHS repeat-associated core domain-containing protein complement(52880..59407) Runella slithyformis DSM 19594 10863074 YP_004646490.1 CDS Runsl_5877 NC_015694.1 59404 61182 R KEGG: fal:FRAAL2567 hypothetical protein; SPTR: Putative secreted protein; hypothetical protein complement(59404..61182) Runella slithyformis DSM 19594 10863075 YP_004646491.1 CDS Runsl_5878 NC_015694.1 61210 62403 R InterPro IPR003615:IPR002711; KEGG: cyt:cce_4359 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: Putative uncharacterized protein; hypothetical protein complement(61210..62403) Runella slithyformis DSM 19594 10863076 YP_004646492.1 CDS Runsl_5879 NC_015694.1 63167 63583 D PFAM: HNH endonuclease; HNH endonuclease 63167..63583 Runella slithyformis DSM 19594 10863077 YP_004646493.1 CDS Runsl_5880 NC_015694.1 63605 63994 D COGs: COG4227 Antirestriction protein; InterPro IPR013610; KEGG: sli:Slin_6843 domain of unknown function DUF1738; PFAM: Domain of unknown function DUF1738; SPTR: Putative uncharacterized protein; hypothetical protein 63605..63994 Runella slithyformis DSM 19594 10863078 YP_004646494.1 CDS Runsl_5881 NC_015694.1 64136 65059 D PFAM: Domain of unknown function (DUF1738); hypothetical protein 64136..65059 Runella slithyformis DSM 19594 10863079 YP_004646495.1 CDS Runsl_5882 NC_015694.1 65654 65881 D COGs: COG5527 Protein involved in initiation of plasmid replication; InterPro IPR000525; KEGG: sli:Slin_7050 initiator RepB protein; PFAM: Initiator Rep protein; SPTR: Initiator RepB protein; hypothetical protein 65654..65881 Runella slithyformis DSM 19594 10863080 YP_004646496.1 CDS Runsl_5883 NC_015694.1 65967 66884 R PFAM: Initiator Replication protein; Signal predicted by SignalP 3.0 HMM; IMG reference gene:2505789089_SP; initiator RepB protein complement(65967..66884) Runella slithyformis DSM 19594 10863081 YP_004646497.1 CDS Runsl_5736 NC_015695.1 140 1321 D PFAM: Glycosyl transferases group 1; COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR001360:IPR005913; KEGG: cyj:Cyan7822_5881 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; Glycoside hydrolase, family 1; PRIAM: dTDP-4-dehydrorhamnose reductase; SPTR: dTDP-4-dehydrorhamnose reductase; UDP-galactopyranose mutase 140..1321 Runella slithyformis DSM 19594 10860986 YP_004646498.1 CDS Runsl_5737 NC_015695.1 1373 3550 D PFAM: RmlD substrate binding domain; Glycosyl hydrolase family 1; TIGRFAM: dTDP-4-dehydrorhamnose reductase; COGs: COG3685 conserved hypothetical protein; InterPro IPR010287; KEGG: fba:FIC_01702 protein of unknown function DUF892; PFAM: Protein of unknown function DUF892; SPTR: Putative uncharacterized protein; dTDP-4-dehydrorhamnose reductase 1373..3550 Runella slithyformis DSM 19594 10860955 YP_004646499.1 CDS Runsl_5738 NC_015695.1 3665 4243 R PFAM: Domain of unknown function (DUF892); COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: ttr:Tter_0621 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; manually curated; hypothetical protein complement(3665..4243) Runella slithyformis DSM 19594 10860956 YP_004646500.1 CDS Runsl_5739 NC_015695.1 4411 5229 D PFAM: Xylose isomerase-like TIM barrel; COGs: COG3040 Bacterial lipocalin; InterPro IPR013208; KEGG: chu:CHU_0414 outer membrane lipoprotein; PFAM: Lipocalin-like; SPTR: Outer membrane lipoprotein (Lipocalin); Xylose isomerase domain-containing protein TIM barrel 4411..5229 Runella slithyformis DSM 19594 10860957 YP_004646501.1 CDS Runsl_5740 NC_015695.1 5307 5846 D PFAM: Lipocalin-like domain; InterPro IPR010496; KEGG: dfe:Dfer_4250 protein of unknown function DUF1080; PFAM: Protein of unknown function DUF1080; SPTR: Putative uncharacterized protein; Lipocalin family protein 5307..5846 Runella slithyformis DSM 19594 10860958 YP_004646502.1 CDS Runsl_5741 NC_015695.1 5984 6844 R PFAM: Domain of Unknown Function (DUF1080); InterPro IPR013427:IPR004155; KEGG: dfe:Dfer_0143 heme-binding protein; PFAM: PBS lyase HEAT-like repeat; SPTR: Heme-binding protein; TIGRFAM: Putative haem-binding region; hypothetical protein complement(5984..6844) Runella slithyformis DSM 19594 10860959 YP_004646503.1 CDS Runsl_5742 NC_015695.1 6929 9649 R PFAM: Cytochrome c; PBS lyase HEAT-like repeat; TIGRFAM: putative heme-binding domain, Pirellula/Verrucomicrobium type; InterPro IPR001087; KEGG: sli:Slin_3845 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family; heme-binding protein complement(6929..9649) Runella slithyformis DSM 19594 10860960 YP_004646504.1 CDS Runsl_5743 NC_015695.1 9718 10542 R PFAM: GDSL-like Lipase/Acylhydrolase; COGs: COG2936 acyl esterase; InterPro IPR005674:IPR000383:IPR013736; KEGG: phe:Phep_3711 peptidase S15; SPTR: Peptidase S15; TIGRFAM: CocE/NonD hydrolase; G-D-S-L family lipolytic protein complement(9718..10542) Runella slithyformis DSM 19594 10860961 YP_004646505.1 CDS Runsl_5744 NC_015695.1 10557 12581 R PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: putative hydrolase, CocE/NonD family; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: sli:Slin_6665 integrase family protein; PFAM: Integrase, catalytic core, phage; SPTR: Integrase family protein; hydrolase CocE/NonD family protein complement(10557..12581) Runella slithyformis DSM 19594 10860962 YP_004646506.1 CDS Runsl_5745 NC_015695.1 12637 13818 R PFAM: Phage integrase family; COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: bvu:BVU_0570 hypothetical protein; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein; integrase family protein complement(12637..13818) Runella slithyformis DSM 19594 10860963 YP_004646507.1 CDS Runsl_5746 NC_015695.1 13917 15113 R COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; HAMAP: DNA polymerase IV; InterPro IPR001126; KEGG: sli:Slin_1272 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like; PRIAM: DNA-directed DNA polymerase; SPTR: DNA polymerase IV; AAA ATPase complement(13917..15113) Runella slithyformis DSM 19594 10860964 YP_004646508.1 CDS Runsl_5747 NC_015695.1 15268 16335 D PFAM: impB/mucB/samB family C-terminal; impB/mucB/samB family; IMS family HHH motif; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR006311:IPR012307; KEGG: sli:Slin_1842 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; DNA polymerase IV 15268..16335 Runella slithyformis DSM 19594 10860965 YP_004646509.1 CDS Runsl_5748 NC_015695.1 16515 17372 D PFAM: Xylose isomerase-like TIM barrel; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: sli:Slin_1843 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; Xylose isomerase domain-containing protein TIM barrel 16515..17372 Runella slithyformis DSM 19594 10860966 YP_004646510.1 CDS Runsl_5749 NC_015695.1 17414 18757 D PFAM: Oxidoreductase family, NAD-binding Rossmann fold; COGs: COG3802 conserved hypothetical protein; InterPro IPR002529; KEGG: mci:Mesci_5979 fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like; SPTR: Fumarylacetoacetate (FAA) hydrolase; oxidoreductase domain-containing protein 17414..18757 Runella slithyformis DSM 19594 10860967 YP_004646511.1 CDS Runsl_5750 NC_015695.1 18912 19880 R PFAM: Fumarylacetoacetate (FAA) hydrolase family; InterPro IPR019587; KEGG: mel:Metbo_2377 polyketide cyclase/dehydrase; PFAM: Polyketide cyclase/dehydrase; SPTR: Putative uncharacterized protein; fumarylacetoacetate (FAA) hydrolase complement(18912..19880) Runella slithyformis DSM 19594 10860968 YP_004646512.1 CDS Runsl_5751 NC_015695.1 19995 20519 R PFAM: Polyketide cyclase / dehydrase and lipid transport; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: dfe:Dfer_1119 putative transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: Putative transcriptional regulator, Crp/Fnr family; Polyketide cyclase/dehydrase complement(19995..20519) Runella slithyformis DSM 19594 10860969 YP_004646513.1 CDS Runsl_5752 NC_015695.1 20498 21082 R PFAM: Cyclic nucleotide-binding domain; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: ara:Arad_3007 sarcosine oxidase protein; PFAM: FAD dependent oxidoreductase; SPTR: Sarcosine oxidase protein; putative Crp/Fnr family transcriptional regulator complement(20498..21082) Runella slithyformis DSM 19594 10860970 YP_004646514.1 CDS Runsl_5753 NC_015695.1 21205 22392 D PFAM: FAD dependent oxidoreductase; COGs: COG2721 Altronate dehydratase; InterPro IPR013974:IPR007392; KEGG: sli:Slin_0416 altronate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase, C-terminal; SAF domain; PRIAM: Altronate dehydratase; SPTR: Altronate dehydratase; FAD dependent oxidoreductase 21205..22392 Runella slithyformis DSM 19594 10860971 YP_004646515.1 CDS Runsl_5754 NC_015695.1 22440 24092 R PFAM: SAF domain; D-galactarate dehydratase / Altronate hydrolase, C terminus; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: csa:Csal_1140 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; PRIAM: Aldehyde dehydrogenase (NADP(+)); SPTR: Aldehyde Dehydrogenase; Altronate dehydratase complement(22440..24092) Runella slithyformis DSM 19594 10860972 YP_004646516.1 CDS Runsl_5755 NC_015695.1 24188 25768 R PFAM: Aldehyde dehydrogenase family; COGs: COG3970 Fumarylacetoacetate (FAA) hydrolase family protein; InterPro IPR002529; KEGG: sli:Slin_1198 fumarylacetoacetate hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like; SPTR: Fumarylacetoacetate (FAA) hydrolase; aldehyde dehydrogenase (NADP(+)) complement(24188..25768) Runella slithyformis DSM 19594 10860973 YP_004646517.1 CDS Runsl_5756 NC_015695.1 25771 26619 R PFAM: Fumarylacetoacetate (FAA) hydrolase family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: psn:Pedsa_1486 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; fumarylacetoacetate (FAA) hydrolase complement(25771..26619) Runella slithyformis DSM 19594 10860974 YP_004646518.1 CDS Runsl_5757 NC_015695.1 26680 27663 D PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG5527 Protein involved in initiation of plasmid replication; InterPro IPR000525; KEGG: sli:Slin_6661 initiator RepB protein; PFAM: Initiator Rep protein; SPTR: Initiator RepB protein; AraC family transcriptional regulator 26680..27663 Runella slithyformis DSM 19594 10860975 YP_004646519.1 CDS Runsl_5758 NC_015695.1 27698 28648 R PFAM: Initiator Replication protein; COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: sli:Slin_3649 cobyrinic acid ac-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Cobyrinic acid ac-diamide synthase; initiator RepB protein complement(27698..28648) Runella slithyformis DSM 19594 10860976 YP_004646520.1 CDS Runsl_5759 NC_015695.1 29760 30716 D PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; KEGG: sli:Slin_3648 hypothetical protein; SPTR: Putative uncharacterized protein; Cobyrinic acid ac-diamide synthase 29760..30716 Runella slithyformis DSM 19594 10860977 YP_004646521.1 CDS Runsl_5760 NC_015695.1 30726 31676 D COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR003088; KEGG: sli:Slin_5485 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Protein up-regulated by thyroid hormone-putative PQQ-dependent glucose dehydrogenase; hypothetical protein 30726..31676 Runella slithyformis DSM 19594 10860978 YP_004646522.1 CDS Runsl_5761 NC_015695.1 31813 33606 D PFAM: Cytochrome c; Glucose / Sorbosone dehydrogenase; InterPro IPR007272; KEGG: lby:Lbys_0966 hypothetical protein; PFAM: Protein of unknown function DUF395, YeeE/YedE; SPTR: Putative uncharacterized protein; cytochrome c class I 31813..33606 Runella slithyformis DSM 19594 10860979 YP_004646523.1 CDS Runsl_5762 NC_015695.1 33760 34263 R PFAM: YeeE/YedE family (DUF395); InterPro IPR007272; KEGG: sli:Slin_6934 protein of unknown function DUF395 YeeE/YedE; PFAM: Protein of unknown function DUF395, YeeE/YedE; SPTR: Putative uncharacterized protein; hypothetical protein complement(33760..34263) Runella slithyformis DSM 19594 10860980 YP_004646524.1 CDS Runsl_5763 NC_015695.1 34285 34860 R PFAM: YeeE/YedE family (DUF395); COGs: COG1295 membrane protein; InterPro IPR017039:IPR004664; KEGG: shg:Sph21_2110 ribonuclease BN; PFAM: Ribonuclease BN-related; SPTR: Putative uncharacterized protein; TIGRFAM: Ribonuclease BN; hypothetical protein complement(34285..34860) Runella slithyformis DSM 19594 10860981 YP_004646525.1 CDS Runsl_5764 NC_015695.1 35082 36050 R PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN); COGs: COG1546 Uncharacterized protein (competence- and mitomycin-induced); InterPro IPR008136; KEGG: dfe:Dfer_0362 CinA domain protein; PFAM: CinA, C-terminal; SPTR: CinA domain protein; TIGRFAM: CinA, C-terminal; ribonuclease BN complement(35082..36050) Runella slithyformis DSM 19594 10860982 YP_004646526.1 CDS Runsl_5765 NC_015695.1 36084 36560 R PFAM: Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA C-terminal domain; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_0452 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; CinA domain-containing protein complement(36084..36560) Runella slithyformis DSM 19594 10860983 YP_004646527.1 CDS Runsl_5766 NC_015695.1 36612 37460 R PFAM: short chain dehydrogenase; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; KEGG: sli:Slin_0497 short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-(acyl-carrier-protein) reductase complement(36612..37460) Runella slithyformis DSM 19594 10860984 YP_004646528.1 CDS Runsl_5767 NC_015695.1 37513 38133 R Signal predicted by SignalP 3.0 HMM; IMG reference gene:2505789000_SP; hypothetical protein complement(37513..38133) Runella slithyformis DSM 19594 10860985 YP_004653593.1 CDS Runsl_0001 NC_015703.1 123 1550 D PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA; KEGG: sli:Slin_0002 hypothetical protein; SPTR: uncharacterized protein; chromosome replication initiator DnaA 123..1550 Runella slithyformis DSM 19594 10874206 YP_004653594.1 CDS Runsl_0002 NC_015703.1 1570 2538 D COGs: COG1652 Uncharacterized protein containing LysM domain; InterPro IPR002482:IPR007055:IPR018392; KEGG: lby:Lbys_1294 peptidoglycaN-binding lysin domain; PFAM: Peptidoglycan-binding lysin domain; Transport-associated; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Peptidoglycan-binding lysin domain; hypothetical protein 1570..2538 Runella slithyformis DSM 19594 10868511 YP_004653595.1 CDS Runsl_0003 NC_015703.1 2596 3054 R PFAM: phospholipid-binding domain; LysM domain; COGs: COG1052 Lactate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140; KEGG: fjo:Fjoh_1917 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; PRIAM: D-lactate dehydrogenase; SPTR: D-lactate dehydrogenase; peptidoglycan-binding lysin domain-containing protein complement(2596..3054) Runella slithyformis DSM 19594 10868512 YP_004653596.1 CDS Runsl_0004 NC_015703.1 3195 4187 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro IPR000182; KEGG: bha:BH1000 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; D-lactate dehydrogenase 3195..4187 Runella slithyformis DSM 19594 10868513 YP_004653597.1 CDS Runsl_0005 NC_015703.1 4184 4630 D PFAM: Acetyltransferase (GNAT) family; COGs: COG2367 Beta-lactamase class A; InterPro IPR001466; KEGG: sli:Slin_3212 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; N-acetyltransferase GCN5 4184..4630 Runella slithyformis DSM 19594 10868514 YP_004653598.1 CDS Runsl_0006 NC_015703.1 4690 5634 D KEGG: lby:Lbys_1886 periplasmic protein; SPTR: periplasmic protein; beta-lactamase 4690..5634 Runella slithyformis DSM 19594 10868515 YP_004653599.1 CDS Runsl_0007 NC_015703.1 5823 7001 D KEGG: cts:Ctha_0434 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5823..7001 Runella slithyformis DSM 19594 10868516 YP_004653600.1 CDS Runsl_0008 NC_015703.1 7047 7976 D TIGRFAM: conserved hypothetical protein ( transposase or invertase); COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_6142 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; hypothetical protein 7047..7976 Runella slithyformis DSM 19594 10868517 YP_004653601.1 CDS Runsl_0009 NC_015703.1 7979 10531 R PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593:IPR003439; KEGG: sli:Slin_0389 ABC transporter; PFAM: ABC transporter-like; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; TonB-dependent receptor complement(7979..10531) Runella slithyformis DSM 19594 10868518 YP_004653602.1 CDS Runsl_0010 NC_015703.1 10598 12421 R PFAM: ABC transporter; xenobiotic-transporting ATPase complement(10598..12421) Runella slithyformis DSM 19594 10868519 YP_004653603.1 CDS Runsl_0011 NC_015703.1 12631 12777 D COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR013428:IPR013427:IPR003088; KEGG: sli:Slin_5811 dehydrogenase; PFAM: Cytochrome c, class I; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; haem-binding region; hypothetical protein 12631..12777 Runella slithyformis DSM 19594 10868520 YP_004653604.1 CDS Runsl_0012 NC_015703.1 13345 16422 D PFAM: Cytochrome c; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_3666 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; membrane-bound dehydrogenase domain-containing protein 13345..16422 Runella slithyformis DSM 19594 10868521 YP_004653605.1 CDS Runsl_0013 NC_015703.1 16765 17319 D PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; ECF subfamily RNA polymerase sigma-24 subunit 16765..17319 Runella slithyformis DSM 19594 10868522 YP_004653606.1 CDS Runsl_0014 NC_015703.1 17297 18091 D KEGG: cpi:Cpin_2142 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 17297..18091 Runella slithyformis DSM 19594 10868523 YP_004653607.1 CDS Runsl_0015 NC_015703.1 18141 19247 D COGs: COG1770 Protease II; InterPro IPR004106:IPR001375; KEGG: tde:TDE2140 protease II; PRIAM: Oligopeptidase B; SPTR: Oligopeptidase B; hypothetical protein 18141..19247 Runella slithyformis DSM 19594 10868524 YP_004653608.1 CDS Runsl_0016 NC_015703.1 19402 21546 D PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase; InterPro IPR005181; KEGG: fbc:FB2170_02125 sialic acid-specific 9-O-acetylesterase; PFAM: Protein of unknown function DUF303, acetylesterase PRIAM: Sialate O-acetylesterase; SPTR: Sialic acid-specific 9-O-acetylesterase; oligopeptidase B 19402..21546 Runella slithyformis DSM 19594 10868525 YP_004653609.1 CDS Runsl_0017 NC_015703.1 22047 23450 R PFAM: Domain of unknown function (DUF303); COGs: COG3509 Poly(3-hydroxybutyrate) depolymerase; KEGG: sli:Slin_3891 poly(3-hydroxybutyrate) depolymerase-like protein; SPTR: Poly(3-hydroxybutyrate) depolymerase-like protein; sialate O-acetylesterase complement(22047..23450) Runella slithyformis DSM 19594 10868526 YP_004653610.1 CDS Runsl_0018 NC_015703.1 23667 24533 R PFAM: Phospholipase/Carboxylesterase; KEGG: psn:Pedsa_0710 hypothetical protein; SPTR: uncharacterized protein; poly(3-hydroxybutyrate) depolymerase-like protein complement(23667..24533) Runella slithyformis DSM 19594 10868527 YP_004653611.1 CDS Runsl_0019 NC_015703.1 24565 25500 R COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006103; KEGG: gym:GYMC10_0218 glycoside hydrolase 2 sugar binding protein; PFAM: Glycoside hydrolase 2, carbohydrate-binding; Glycoside hydrolase 2, TIM barrel; SPTR: Glycoside hydrolase 2 sugar binding protein; hypothetical protein complement(24565..25500) Runella slithyformis DSM 19594 10868528 YP_004653612.1 CDS Runsl_0020 NC_015703.1 25604 28447 R PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; KEGG: dfe:Dfer_3650 hypothetical protein; SPTR: uncharacterized protein; glycoside hydrolase complement(25604..28447) Runella slithyformis DSM 19594 10868529 YP_004653613.1 CDS Runsl_0021 NC_015703.1 28550 29530 D PFAM: alpha/beta hydrolase fold; COGs: COG0221 Inorganic pyrophosphatase; InterPro IPR008162; KEGG: sli:Slin_2409 inorganic diphosphatase; PFAM: Inorganic pyrophosphatase; PRIAM: Inorganic diphosphatase; SPTR: Inorganic diphosphatase; hypothetical protein 28550..29530 Runella slithyformis DSM 19594 10868530 YP_004653614.1 CDS Runsl_0022 NC_015703.1 29725 30342 R PFAM: Inorganic pyrophosphatase; COGs: COG0025 NhaP-type Na+/H+ and K+/H+ antiporter; InterPro IPR004705:IPR006153; KEGG: cpi:Cpin_3978 Na+/H+ antiporter; PFAM: Cation/H+ exchanger; SPTR: Na+/H+ antiporter; TIGRFAM: Na+/H+ exchanger, yjcE-like, bacteria; inorganic diphosphatase complement(29725..30342) Runella slithyformis DSM 19594 10868531 YP_004653615.1 CDS Runsl_0023 NC_015703.1 30417 32042 D PFAM: Sodium/hydrogen exchanger family; TIGRFAM: Na+/H+ antiporter, bacterial form; COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017; KEGG: dfe:Dfer_4016 protein of unknown function DUF224 cysteine-rich region domain protein; PFAM: Cysteine-rich region, CCG; SPTR: uncharacterized protein; Na+/H+ antiporter 30417..32042 Runella slithyformis DSM 19594 10868532 YP_004653616.1 CDS Runsl_0024 NC_015703.1 32127 32918 D PFAM: Cysteine-rich domain; KEGG: dfe:Dfer_4015 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 32127..32918 Runella slithyformis DSM 19594 10868533 YP_004653617.1 CDS Runsl_0025 NC_015703.1 33095 33592 D COGs: COG2989 conserved hypothetical protein; InterPro IPR005490; KEGG: dfe:Dfer_3137 ErfK/YbiS/YcfS/YnhG family protein; PFAM: YkuD domain; SPTR: ErfK/YbiS/YcfS/YnhG family protein; hypothetical protein 33095..33592 Runella slithyformis DSM 19594 10868534 YP_004653618.1 CDS Runsl_0026 NC_015703.1 33833 34996 D PFAM: L,D-transpeptidase catalytic domain; KEGG: dfe:Dfer_3138 hypothetical protein; SPTR: uncharacterized protein; ErfK/YbiS/YcfS/YnhG family protein 33833..34996 Runella slithyformis DSM 19594 10868535 YP_004653619.1 CDS Runsl_0027 NC_015703.1 34993 35745 R PFAM: L,D-transpeptidase catalytic domain; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: dfe:Dfer_0453 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family; hypothetical protein complement(34993..35745) Runella slithyformis DSM 19594 10868536 YP_004653620.1 CDS Runsl_0028 NC_015703.1 35940 36620 D PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: dfe:Dfer_0452 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SPTR: Histidine kinase; winged helix family two component transcriptional regulator 35940..36620 Runella slithyformis DSM 19594 10868537 YP_004653621.1 CDS Runsl_0029 NC_015703.1 36621 37994 D PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; integral membrane sensor signal transduction histidine kinase 36621..37994 Runella slithyformis DSM 19594 10868538 YP_004653622.1 CDS Runsl_0030 NC_015703.1 38164 38466 D COGs: COG0560 Phosphoserine phosphatase; InterPro IPR001173:IPR013200; KEGG: cpi:Cpin_0395 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; HAD superfamily hydrolase-like, type 3; SPTR: Glycosyl transferase 2; hypothetical protein 38164..38466 Runella slithyformis DSM 19594 10868539 YP_004653623.1 CDS Runsl_0031 NC_015703.1 38739 40115 D PFAM: Glycosyl transferase 2; Phosphatase; TIGRFAM: Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; phosphoserine phosphatase SerB; COGs: COG0530 Ca2+/Na+ antiporter; InterPro IPR004837; KEGG: mrb:Mrub_2556 Na+/Ca+ antiporter, CaCA family; PFAM: Sodium/calcium exchanger membrane region; SPTR: Na+/Ca+ antiporter, CaCA family; family 2 glycosyl transferase 38739..40115 Runella slithyformis DSM 19594 10868540 YP_004653624.1 CDS Runsl_0032 NC_015703.1 40140 41075 R PFAM: Sodium/calcium exchanger protein; TIGRFAM: K+-dependent Na+/Ca+ exchanger related-protein; COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; InterPro IPR004680; KEGG: sli:Slin_1848 citrate transporter; PFAM: Divalent ion symporter; SPTR: Citrate transporter; sodium/calcium exchanger membrane region complement(40140..41075) Runella slithyformis DSM 19594 10868541 YP_004653625.1 CDS Runsl_0033 NC_015703.1 41191 42456 D PFAM: Citrate transporter; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: dfe:Dfer_5034 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; PRIAM: L-aminoadipate-semialdehyde dehydrogenase; SPTR: Aldehyde Dehydrogenase; citrate transporter 41191..42456 Runella slithyformis DSM 19594 10868542 YP_004653626.1 CDS Runsl_0034 NC_015703.1 42536 44062 D PFAM: Aldehyde dehydrogenase; COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR011611:IPR005834; KEGG: dfe:Dfer_4313 PfkB domain protein; PFAM: Carbohydrate/purine kinase; Haloacid dehalogenase-like hydrolase; SPTR: PfkB domain protein; L-aminoadipate-semialdehyde dehydrogenase 42536..44062 Runella slithyformis DSM 19594 10868543 YP_004653627.1 CDS Runsl_0035 NC_015703.1 44137 46152 D PFAM: pfkB family carbohydrate kinase; haloacid dehalogenase-like hydrolase; TIGRFAM: rfaE bifunctional protein, domain I; COGs: COG3537 alpha-1 2-mannosidase; InterPro IPR005887:IPR012939; KEGG: kol:Kole_0483 alpha-1,2-mannosidase; PFAM: Glycosyl hydrolase 92; SPTR: Alpha-1,2-mannosidase; TIGRFAM: Alpha-1,2-mannosidase; PfkB domain-containing protein 44137..46152 Runella slithyformis DSM 19594 10868544 YP_004653628.1 CDS Runsl_0036 NC_015703.1 46152 48695 D PFAM: Glycosyl hydrolase 92; TIGRFAM: alpha-1,2-mannosidase, COGs: COG3394 conserved hypothetical protein; InterPro IPR006879; KEGG: dfe:Dfer_4311 YdjC family protein; PFAM: YdjC-like protein; SPTR: YdjC family protein; alpha-1,2-mannosidase 46152..48695 Runella slithyformis DSM 19594 10868545 YP_004653629.1 CDS Runsl_0037 NC_015703.1 48838 49899 D PFAM: YdjC-like protein; COGs: COG4692 neuraminidase (sialidase); KEGG: shg:Sph21_1902 neuraminidase (sialidase)-like protein; SPTR: Neuraminidase (Sialidase)-like protein; hypothetical protein 48838..49899 Runella slithyformis DSM 19594 10868546 YP_004653630.1 CDS Runsl_0038 NC_015703.1 50027 51208 D PFAM: BNR/Asp-box repeat; KEGG: dfe:Dfer_3113 hypothetical protein; SPTR: uncharacterized protein; neuraminidase (sialidase)-like protein 50027..51208 Runella slithyformis DSM 19594 10868547 YP_004653631.1 CDS Runsl_0039 NC_015703.1 51530 52906 D Prodigal; manually curated; hypothetical protein 51530..52906 Runella slithyformis DSM 19594 10868548 YP_004653632.1 CDS Runsl_0041 NC_015703.1 53861 55168 R KEGG: dfe:Dfer_4310 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(53861..55168) Runella slithyformis DSM 19594 10868550 YP_004653633.1 CDS Runsl_0042 NC_015703.1 55534 57729 D KEGG: sli:Slin_6607 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 55534..57729 Runella slithyformis DSM 19594 10868551 YP_004653634.1 CDS Runsl_0043 NC_015703.1 57784 60033 D InterPro IPR011659; KEGG: dfe:Dfer_4309 hypothetical protein; PFAM: WD40-like Beta Propeller; SPTR: uncharacterized protein; hypothetical protein 57784..60033 Runella slithyformis DSM 19594 10868552 YP_004653635.1 CDS Runsl_0044 NC_015703.1 60137 61585 D PFAM: Protein of unknown function (DUF3748); KEGG: sli:Slin_0763 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 60137..61585 Runella slithyformis DSM 19594 10868553 YP_004653636.1 CDS Runsl_0045 NC_015703.1 61652 62842 D PFAM: Secretory lipase; InterPro IPR007139; KEGG: sli:Slin_5235 hypothetical protein; PFAM: Protein of unknown function DUF349; SPTR: uncharacterized protein; hypothetical protein 61652..62842 Runella slithyformis DSM 19594 10868554 YP_004653637.1 CDS Runsl_0046 NC_015703.1 62931 64199 R PFAM: Domain of Unknown Function (DUF349); COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR003439; KEGG: sli:Slin_5234 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; TIGRFAM: ATP-binding cassette protein, ChvD family; hypothetical protein complement(62931..64199) Runella slithyformis DSM 19594 10868555 YP_004653638.1 CDS Runsl_0047 NC_015703.1 64354 66024 D PFAM: ABC transporter; TIGRFAM: ATP-binding cassette protein, ChvD family; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_2955 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; ChvD family ATP-binding protein 64354..66024 Runella slithyformis DSM 19594 10868556 YP_004653639.1 CDS Runsl_0048 NC_015703.1 66057 67082 R PFAM: NAD dependent epimerase/dehydratase; KEGG: sli:Slin_0499 hypothetical protein; SPTR: uncharacterized protein; NAD-dependent epimerase/dehydratase complement(66057..67082) Runella slithyformis DSM 19594 10868557 YP_004653640.1 CDS Runsl_0049 NC_015703.1 67357 68631 D PFAM: OmpA family; COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR002054:IPR003141:IPR004013; KEGG: dfe:Dfer_5653 PHP domain protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal; DNA-directed DNA polymerase, family X; SPTR: PHP domain protein; hypothetical protein 67357..68631 Runella slithyformis DSM 19594 10868558 YP_004653641.1 CDS Runsl_0050 NC_015703.1 68722 70494 R PFAM: PHP domain; KEGG: dfe:Dfer_4377 hypothetical protein; SPTR: uncharacterized protein; PHP domain-containing protein complement(68722..70494) Runella slithyformis DSM 19594 10868559 YP_004653642.1 CDS Runsl_0051 NC_015703.1 70913 71863 D KEGG: sli:Slin_2831 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 70913..71863 Runella slithyformis DSM 19594 10868560 YP_004653643.1 CDS Runsl_0052 NC_015703.1 72040 72312 D KEGG: cpi:Cpin_1115 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 72040..72312 Runella slithyformis DSM 19594 10868561 YP_004653644.1 CDS Runsl_0053 NC_015703.1 72334 72606 D COGs: COG0692 Uracil DNA glycosylase; HAMAP: Uracil-DNA glycosylase; InterPro IPR002043:IPR005122; KEGG: sli:Slin_0246 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase-like; SPTR: Uracil-DNA glycosylase; TIGRFAM: Uracil-DNA glycosylase; hypothetical protein 72334..72606 Runella slithyformis DSM 19594 10868562 YP_004653645.1 CDS Runsl_0054 NC_015703.1 72680 73345 R PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase; uracil-DNA glycosylase complement(72680..73345) Runella slithyformis DSM 19594 10868563 YP_004653646.1 CDS Runsl_0055 NC_015703.1 73353 73478 D COGs: COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport; InterPro IPR007474; KEGG: sli:Slin_0247 ApaG domain protein; PFAM: ApaG; SPTR: ApaG domain protein; hypothetical protein 73353..73478 Runella slithyformis DSM 19594 10868564 YP_004653647.1 CDS Runsl_0056 NC_015703.1 73514 73900 D PFAM: Protein of unknown function (DUF525); COGs: COG4122 O-methyltransferase; KEGG: sli:Slin_0248 O-methyltransferase-like protein; SPTR: O-methyltransferase-like protein; ApaG domain-containing protein 73514..73900 Runella slithyformis DSM 19594 10868565 YP_004653648.1 CDS Runsl_0057 NC_015703.1 74074 74862 D PFAM: O-methyltransferase; COGs: COG1846 Transcriptional regulators; InterPro IPR000835; KEGG: sli:Slin_6318 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; O-methyltransferase-like protein 74074..74862 Runella slithyformis DSM 19594 10868566 YP_004653649.1 CDS Runsl_0058 NC_015703.1 74946 75386 D PFAM: MarR family; COGs: COG0738 Fucose permease; InterPro IPR011701; KEGG: rxy:Rxyl_2098 major facilitator transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; MarR family transcriptional regulator 74946..75386 Runella slithyformis DSM 19594 10868567 YP_004653650.1 CDS Runsl_0059 NC_015703.1 75395 76510 R PFAM: Major Facilitator Superfamily; COGs: COG0223 Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; InterPro IPR005794:IPR002376:IPR005793; KEGG: dfe:Dfer_4814 methionyl-tRNA formyltransferase; PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; PRIAM: Methionyl-tRNA formyltransferase; SPTR: Methionyl-tRNA formyltransferase; TIGRFAM: Methionyl-tRNA formyltransferase; major facilitator superfamily protein complement(75395..76510) Runella slithyformis DSM 19594 10868568 YP_004653651.1 CDS Runsl_0060 NC_015703.1 76538 77434 R PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase; COGs: COG0782 Transcription elongation factor; HAMAP: Transcription elongation factor greA; InterPro IPR006359:IPR001437; KEGG: dfe:Dfer_4815 transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic; SPTR: Transcription elongation factor greA; TIGRFAM: Prokaryotic transcription elongation factor GreA; methionyl-tRNA formyltransferase complement(76538..77434) Runella slithyformis DSM 19594 10868569 YP_004653652.1 CDS Runsl_0061 NC_015703.1 77739 78212 D PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreA; transcription elongation factor GreA 77739..78212 Runella slithyformis DSM 19594 10868570 YP_004653653.1 CDS Runsl_0062 NC_015703.1 78624 78977 D COGs: COG0012 GTPase probable translation factor; InterPro IPR004396:IPR002917:IPR013029; KEGG: chu:CHU_2219 GTP-dependent nucleic acid-binding protein EngD; PFAM: Protein of unknown function DUF933; GTP-binding protein, HSR1-related; SPTR: GTP-binding protein; TIGRFAM: Conserved hypothetical protein CHP00092; hypothetical protein 78624..78977 Runella slithyformis DSM 19594 10868571 YP_004653654.1 CDS Runsl_0063 NC_015703.1 79071 80168 R PFAM: GTPase of unknown function; Protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF; small GTP-binding protein domain; InterPro IPR006628; KEGG: sli:Slin_4280 hypothetical protein; SMART: PUR-alpha/beta/gamma, DNA/RNA-binding; SPTR: uncharacterized protein; GTP-binding protein YchF complement(79071..80168) Runella slithyformis DSM 19594 10868572 YP_004653655.1 CDS Runsl_0064 NC_015703.1 80395 80715 R PFAM: Protein of unknown function (DUF3276); COGs: COG0797 Lipoprotein; InterPro IPR012997:IPR005132; KEGG: dfe:Dfer_4774 rare lipoprotein A; PFAM: Rare lipoprotein A; SPTR: Rare lipoprotein A; TIGRFAM: Rare lipoprotein A, bacterial; PUR-alpha/beta/gamma DNA/RNA-binding protein complement(80395..80715) Runella slithyformis DSM 19594 10868573 YP_004653656.1 CDS Runsl_0065 NC_015703.1 80984 81430 D PFAM: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; TIGRFAM: rare lipoprotein A; COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: sli:Slin_4278 hypothetical protein; PFAM: Protein of unknown function DUF58; SPTR: uncharacterized protein; rare lipoprotein A 80984..81430 Runella slithyformis DSM 19594 10868574 YP_004653657.1 CDS Runsl_0066 NC_015703.1 81450 82364 D PFAM: Protein of unknown function DUF58; KEGG: psn:Pedsa_2829 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 81450..82364 Runella slithyformis DSM 19594 10868575 YP_004653658.1 CDS Runsl_0067 NC_015703.1 82416 83570 D COGs: COG4299 conserved hypothetical protein; InterPro IPR019259; KEGG: dfe:Dfer_1233 hypothetical protein; PFAM: Protein of unknown function DUF2261, transmembrane; SPTR: uncharacterized protein; hypothetical protein 82416..83570 Runella slithyformis DSM 19594 10868576 YP_004653659.1 CDS Runsl_0068 NC_015703.1 83685 84881 R PFAM: Protein of unknown function (DUF1624); COGs: COG0366 Glycosidase; InterPro IPR006589:IPR006047; KEGG: dfe:Dfer_2758 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; SPTR: Alpha amylase catalytic region; hypothetical protein complement(83685..84881) Runella slithyformis DSM 19594 10868577 YP_004653660.1 CDS Runsl_0069 NC_015703.1 85295 87115 R PFAM: Alpha amylase, catalytic domain; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dfe:Dfer_3949 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; alpha amylase complement(85295..87115) Runella slithyformis DSM 19594 10868578 YP_004653661.1 CDS Runsl_0070 NC_015703.1 87181 88305 D PFAM: Glycosyl transferases group 1; COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; KEGG: sli:Slin_4943 cytochrome c oxidase subunit III; SPTR: Cytochrome c oxidase, subunit III; group 1 glycosyl transferase 87181..88305 Runella slithyformis DSM 19594 10868579 YP_004653662.1 CDS Runsl_0071 NC_015703.1 88315 88929 R PFAM: Cytochrome c oxidase subunit III; COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; InterPro IPR004424:IPR006204:IPR013750; KEGG: sli:Slin_4944 4-diphosphocytidyl-2C-methyl-D-erythritolkinase; PFAM: GHMP kinase; GHMP kinase, C-terminal; SPTR: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; cytochrome c oxidase subunit III complement(88315..88929) Runella slithyformis DSM 19594 10868580 YP_004653663.1 CDS Runsl_0072 NC_015703.1 88954 89763 R PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140:IPR002912; KEGG: dfe:Dfer_4690 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; Amino acid-binding ACT; SPTR: HAD-superfamily hydrolase, subfamily IB (PSPase-like); 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(88954..89763) Runella slithyformis DSM 19594 10868581 YP_004653664.1 CDS Runsl_0073 NC_015703.1 89853 91757 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; ACT domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; InterPro IPR001701; KEGG: lby:Lbys_2672 glycoside hydrolase 9; PFAM: Glycoside hydrolase, family 9; SPTR: uncharacterized protein; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein complement(89853..91757) Runella slithyformis DSM 19594 10868582 YP_004653665.1 CDS Runsl_0074 NC_015703.1 91937 93754 D PFAM: Glycosyl hydrolase 9; N-terminal ig-like domain of cellulase; COGs: COG0420 DNA repair exonuclease; InterPro IPR004593:IPR004843; KEGG: dfe:Dfer_3506 nuclease SbcCD, D subunit; PFAM: Metallophosphoesterase; SPTR: Nuclease SbcCD, D subunit; TIGRFAM: Exonuclease SbcD; glycoside hydrolase 91937..93754 Runella slithyformis DSM 19594 10868583 YP_004653666.1 CDS Runsl_0075 NC_015703.1 93854 95101 D PFAM: Calcineurin-like phosphoesterase; Type 5 capsule protein repressor C terminal; TIGRFAM: exonuclease SbcD; COGs: COG0419 ATPase involved in DNA repair; InterPro IPR003395; KEGG: dfe:Dfer_3418 SMC domain protein; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: SMC domain protein; nuclease SbcCD subunit D 93854..95101 Runella slithyformis DSM 19594 10868584 YP_004653667.1 CDS Runsl_0076 NC_015703.1 95098 98196 D TIGRFAM: exonuclease SbcC; SMC domain-containing protein 95098..98196 Runella slithyformis DSM 19594 10868585 YP_004653668.1 CDS Runsl_0077 NC_015703.1 98065 98331 R COGs: COG1434 conserved hypothetical protein; InterPro IPR003848; KEGG: dfe:Dfer_3103 protein of unknown function DUF218; PFAM: Protein of unknown function DUF218; SPTR: uncharacterized protein; hypothetical protein complement(98065..98331) Runella slithyformis DSM 19594 10868586 YP_004653669.1 CDS Runsl_0078 NC_015703.1 98300 99064 R PFAM: DUF218 domain; InterPro IPR000866; KEGG: sli:Slin_4277 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; hypothetical protein complement(98300..99064) Runella slithyformis DSM 19594 10868587 YP_004653670.1 CDS Runsl_0079 NC_015703.1 99166 100596 D PFAM: AhpC/TSA family; InterPro IPR000866; KEGG: sli:Slin_4277 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; alkyl hydroperoxide reductase 99166..100596 Runella slithyformis DSM 19594 10868588 YP_004653671.1 CDS Runsl_0080 NC_015703.1 100559 102043 D PFAM: AhpC/TSA family; InterPro IPR003769; KEGG: sli:Slin_1599 ATP-dependent Clp protease adaptor protein ClpS; PFAM: Adaptor protein ClpS, core; SPTR: ATP-dependent Clp protease adaptor protein ClpS; alkyl hydroperoxide reductase 100559..102043 Runella slithyformis DSM 19594 10868589 YP_004653672.1 CDS Runsl_0081 NC_015703.1 102158 102445 R PFAM: ATP-dependent Clp protease adaptor protein ClpS; COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: sli:Slin_1598 Na+/solute symporter; PFAM: Sodium/solute symporter; SPTR: Na+/solute symporter; ATP-dependent Clp protease adaptor protein ClpS complement(102158..102445) Runella slithyformis DSM 19594 10868590 YP_004653673.1 CDS Runsl_0082 NC_015703.1 102545 104026 D PFAM: Sodium:solute symporter family; KEGG: rbi:RB2501_03795 hypothetical protein; SPTR: uncharacterized protein; Na+/solute symporter 102545..104026 Runella slithyformis DSM 19594 10868591 YP_004653674.1 CDS Runsl_0083 NC_015703.1 104130 105347 D InterPro IPR012910; KEGG: sli:Slin_2829 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; hypothetical protein 104130..105347 Runella slithyformis DSM 19594 10868592 YP_004653675.1 CDS Runsl_0084 NC_015703.1 105385 107805 D PFAM: TonB-dependent Receptor Plug Domain; COGs: COG1434 conserved hypothetical protein; InterPro IPR003848; KEGG: sli:Slin_3912 hypothetical protein; PFAM: Protein of unknown function DUF218; SPTR: uncharacterized protein; TonB-dependent receptor plug 105385..107805 Runella slithyformis DSM 19594 10868593 YP_004653676.1 CDS Runsl_0085 NC_015703.1 107923 108567 D PFAM: DUF218 domain; COGs: COG2388 acetyltransferase; KEGG: lby:Lbys_1223 gcn5-related N-acetyltransferase; SPTR: Acetyltransferase, GNAT family; hypothetical protein 107923..108567 Runella slithyformis DSM 19594 10868594 YP_004653677.1 CDS Runsl_0086 NC_015703.1 108701 108985 D PFAM: Acetyltransferase (GNAT) family; COGs: COG1741 Pirin-related protein; InterPro IPR003829:IPR008778; KEGG: fjo:Fjoh_3490 pirin domain-containing protein; PFAM: Pirin, N-terminal; Pirin, C-terminal; SPTR: Pirin domain protein; N-acetyltransferase GCN5 108701..108985 Runella slithyformis DSM 19594 10868595 YP_004653678.1 CDS Runsl_0087 NC_015703.1 109001 109897 D PFAM: Pirin C-terminal cupin domain; Pirin; COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933:IPR002860:IPR000421; KEGG: lby:Lbys_2488 coagulation factor 5/8 type domain protein; PFAM: Coagulation factor 5/8 type, C-terminal; Glycoside hydrolase, family 29; BNR repeat; PRIAM: Alpha-L-fucosidase; SMART: Glycoside hydrolase, family 29; SPTR: Coagulation factor 5/8 type domain protein; pirin 109001..109897 Runella slithyformis DSM 19594 10868596 YP_004653679.1 CDS Runsl_0088 NC_015703.1 110338 112758 D PFAM: F5/8 type C domain; Alpha-L-fucosidase; KEGG: dfe:Dfer_3528 hypothetical protein; SPTR: uncharacterized protein; alpha-L-fucosidase 110338..112758 Runella slithyformis DSM 19594 10868597 YP_004653680.1 CDS Runsl_0089 NC_015703.1 112985 114637 D KEGG: dfe:Dfer_3528 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 112985..114637 Runella slithyformis DSM 19594 10868598 YP_004653681.1 CDS Runsl_0090 NC_015703.1 114729 116390 D KEGG: cmi:CMM_2296 hypothetical protein; SPTR: Predicted protein; hypothetical protein 114729..116390 Runella slithyformis DSM 19594 10868599 YP_004653682.1 CDS Runsl_0091 NC_015703.1 116728 117582 D InterPro IPR018580; KEGG: dfe:Dfer_3101 conserved hypothetical protein, membrane; PFAM: Protein of unknown function, membrane YfhO; SPTR: uncharacterized protein; hypothetical protein 116728..117582 Runella slithyformis DSM 19594 10868600 YP_004653683.1 CDS Runsl_0092 NC_015703.1 117888 120365 R PFAM: Bacterial membrane protein YfhO; KEGG: dfe:Dfer_5102 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(117888..120365) Runella slithyformis DSM 19594 10868601 YP_004653684.1 CDS Runsl_0093 NC_015703.1 120460 122184 R COGs: COG0205 6-phosphofructokinase; HAMAP: 6-phosphofructokinase; InterPro IPR012828:IPR000023; KEGG: sli:Slin_4275 6-phosphofructokinase; PFAM: Phosphofructokinase; PRIAM: 6-phosphofructokinase; SPTR: 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; hypothetical protein complement(120460..122184) Runella slithyformis DSM 19594 10868602 YP_004653685.1 CDS Runsl_0094 NC_015703.1 122331 123308 D PFAM: Phosphofructokinase; TIGRFAM: 6-phosphofructokinase; COGs: COG4772 Outer membrane receptor for Fe3+-dicitrate; InterPro IPR012910:IPR000531; KEGG: sli:Slin_6883 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; 6-phosphofructokinase 122331..123308 Runella slithyformis DSM 19594 10868603 YP_004653686.1 CDS Runsl_0095 NC_015703.1 123745 126174 D PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001:IPR001650:IPR007527:IPR000330; KEGG: sli:Slin_5625 SNF2-related protein; PFAM: SNF2-related; Zinc finger, SWIM-type; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: SNF2-related protein; TonB-dependent receptor 123745..126174 Runella slithyformis DSM 19594 10868604 YP_004653687.1 CDS Runsl_0096 NC_015703.1 126389 129934 R PFAM: SNF2 Helicase; Helicase conserved C-terminal domain; SNF2 family N-terminal domain; SWIM zinc finger; KEGG: pdi:BDI_2149 hypothetical protein; SPTR: uncharacterized protein; SNF2-like protein complement(126389..129934) Runella slithyformis DSM 19594 10868605 YP_004653688.1 CDS Runsl_0097 NC_015703.1 129954 131549 R PFAM: Domain of unknown function DUF87; KEGG: bfr:BF1154 hypothetical protein; SPTR: DNA sulfur modification protein DndD; hypothetical protein complement(129954..131549) Runella slithyformis DSM 19594 10868606 YP_004653689.1 CDS Runsl_0098 NC_015703.1 131553 133553 R TIGRFAM: DNA sulfur modification protein DndD; KEGG: bfr:BF1155 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(131553..133553) Runella slithyformis DSM 19594 10868607 YP_004653690.1 CDS Runsl_0099 NC_015703.1 133561 133779 R manually curated; hypothetical protein complement(133561..133779) Runella slithyformis DSM 19594 10868608 YP_004653691.1 CDS Runsl_0101 NC_015703.1 133946 134236 R PFAM: Nucleotidyltransferase domain; InterPro IPR006935; KEGG: pdi:BDI_2135 hypothetical protein; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; SPTR: uncharacterized protein; DNA polymerase beta domain-containing protein complement(133946..134236) Runella slithyformis DSM 19594 10868610 YP_004653692.1 CDS Runsl_0102 NC_015703.1 134285 136621 R PFAM: Type III restriction enzyme, res subunit; KEGG: chu:CHU_0701 hypothetical protein; SPTR: uncharacterized protein; type III restriction protein res subunit complement(134285..136621) Runella slithyformis DSM 19594 10868611 YP_004653693.1 CDS Runsl_0103 NC_015703.1 136717 137106 R COGs: COG2189 Adenine specific DNA methylase Mod; InterPro IPR002941; KEGG: bfr:BF1158 methyltransferase; PFAM: DNA methylase N-4/N-6; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Methyltransferase; hypothetical protein complement(136717..137106) Runella slithyformis DSM 19594 10868612 YP_004653694.1 CDS Runsl_0104 NC_015703.1 137276 139186 R PFAM: DNA methylase; InterPro IPR000595; KEGG: fjo:Fjoh_0475 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding protein; adenine-specific DNA methyltransferase complement(137276..139186) Runella slithyformis DSM 19594 10868613 YP_004653695.1 CDS Runsl_0105 NC_015703.1 139352 139948 D PFAM: Cyclic nucleotide-binding domain; InterPro IPR003961:IPR003343:IPR001547; KEGG: pjd:Pjdr2_5278 fibronectin type III domain protein; PFAM: Fibronectin, type III; Glycoside hydrolase, family 5; Bacterial Ig-like, group 2; SMART: Fibronectin, type III; Bacterial Ig-like, group 2; SPTR: Alpha amylase catalytic region; cyclic nucleotide-binding protein 139352..139948 Runella slithyformis DSM 19594 10868614 YP_004653696.1 CDS Runsl_0106 NC_015703.1 140052 143744 D PFAM: Cellulase (glycosyl hydrolase 5); Fibronectin type III domain; KEGG: dfe:Dfer_4567 hypothetical protein; SPTR: uncharacterized protein; fibronectin type III 140052..143744 Runella slithyformis DSM 19594 10868615 YP_004653697.1 CDS Runsl_0107 NC_015703.1 143808 144368 R COGs: COG0523 GTPase (G3E family); InterPro IPR003495:IPR011629; KEGG: dfe:Dfer_2212 cobalamin synthesis protein P47K; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SPTR: Cobalamin synthesis protein P47K; hypothetical protein complement(143808..144368) Runella slithyformis DSM 19594 10868616 YP_004653698.1 CDS Runsl_0108 NC_015703.1 144506 145720 R PFAM: Cobalamin synthesis protein cobW C-terminal domain; CobW/HypB/UreG, nucleotide-binding domain; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: cpi:Cpin_3275 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: Transcriptional regulator, Crp/Fnr family protein; cobalamin synthesis protein P47K complement(144506..145720) Runella slithyformis DSM 19594 10868617 YP_004653699.1 CDS Runsl_0109 NC_015703.1 146064 146813 D PFAM: Cyclic nucleotide-binding domain; KEGG: mtt:Ftrac_2707 cytochrome c class I; SPTR: Cytochrome c class I; Crp/Fnr family transcriptional regulator 146064..146813 Runella slithyformis DSM 19594 10868618 YP_004653700.1 CDS Runsl_0110 NC_015703.1 147034 147501 D PFAM: Cytochrome c; COGs: COG4263 Nitrous oxide reductase; InterPro IPR002429; KEGG: dfe:Dfer_0693 nitrous-oxide reductase; PFAM: Cytochrome c oxidase subunit II C-terminal; PRIAM: Nitrous-oxide reductase; SPTR: Nitrous-oxide reductase; cytochrome c class I 147034..147501 Runella slithyformis DSM 19594 10868619 YP_004653701.1 CDS Runsl_0111 NC_015703.1 147545 149602 D PFAM: Cytochrome C oxidase subunit II, periplasmic domain; KEGG: dfe:Dfer_0694 hypothetical protein; SPTR: uncharacterized protein; nitrous-oxide reductase 147545..149602 Runella slithyformis DSM 19594 10868620 YP_004653702.1 CDS Runsl_0112 NC_015703.1 149661 150695 D PFAM: NosL; COGs: COG3420 Nitrous oxidase accessory protein; InterPro IPR006633:IPR006626:IPR007742; KEGG: dfe:Dfer_0695 periplasmic copper-binding; PFAM: Periplasmic copper-binding; SMART: Carbohydrate-binding/sugar hydrolysis domain; Parallel beta-helix repeat; SPTR: Periplasmic copper-binding; TIGRFAM: parallel beta-helix repeat; hypothetical protein 149661..150695 Runella slithyformis DSM 19594 10868621 YP_004653703.1 CDS Runsl_0113 NC_015703.1 150722 152128 D PFAM: Periplasmic copper-binding protein (NosD); TIGRFAM: parallel beta-helix repeat (two copies); COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_0696 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; parallel beta-helix repeat-containing protein 150722..152128 Runella slithyformis DSM 19594 10868622 YP_004653704.1 CDS Runsl_0114 NC_015703.1 152210 152962 D PFAM: ABC transporter; KEGG: dfe:Dfer_0697 nitrous-oxide metabolic protein NosY; SPTR: Nitrous-oxide metabolic protein NosY; ABC transporter 152210..152962 Runella slithyformis DSM 19594 10868623 YP_004653705.1 CDS Runsl_0115 NC_015703.1 152959 153726 D COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: gau:GAU_2687 hypothetical protein; PFAM: FAS1 domain; SMART: FAS1 domain; SPTR: uncharacterized protein; nitrous-oxide metabolic protein NosY 152959..153726 Runella slithyformis DSM 19594 10868624 YP_004653706.1 CDS Runsl_0116 NC_015703.1 153811 154359 D PFAM: Fasciclin domain; InterPro IPR013096; KEGG: fbc:FB2170_03785 hypothetical protein; PFAM: Cupin 2, conserved barrel; SPTR: uncharacterized protein; beta-Ig-H3/fasciclin 153811..154359 Runella slithyformis DSM 19594 10868625 YP_004653707.1 CDS Runsl_0117 NC_015703.1 154371 154661 D PFAM: Cupin domain; KEGG: dfe:Dfer_0096 hypothetical protein; SPTR: uncharacterized protein; cupin 154371..154661 Runella slithyformis DSM 19594 10868626 YP_004653708.1 CDS Runsl_0118 NC_015703.1 154782 155171 D KEGG: dfe:Dfer_5208 viral A-type inclusion protein; SPTR: Viral A-type inclusion protein; hypothetical protein 154782..155171 Runella slithyformis DSM 19594 10868627 YP_004653709.1 CDS Runsl_0119 NC_015703.1 155255 155695 D COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_4534 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; viral A-type inclusion protein 155255..155695 Runella slithyformis DSM 19594 10868628 YP_004653710.1 CDS Runsl_0120 NC_015703.1 155692 158058 D PFAM: TonB-dependent Receptor Plug Domain; KEGG: sli:Slin_4533 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor 155692..158058 Runella slithyformis DSM 19594 10868629 YP_004653711.1 CDS Runsl_0121 NC_015703.1 158167 159366 D PFAM: BNR/Asp-box repeat; KEGG: lby:Lbys_1453 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 158167..159366 Runella slithyformis DSM 19594 10868630 YP_004653712.1 CDS Runsl_0122 NC_015703.1 159490 160038 D PFAM: DinB family; KEGG: dfe:Dfer_3660 glycosyltransferase; SPTR: glycosyltransferase; hypothetical protein 159490..160038 Runella slithyformis DSM 19594 10868631 YP_004653713.1 CDS Runsl_0123 NC_015703.1 160177 161283 D PFAM: UDP-glucoronosyl and UDP-glucosyl transferase; TIGRFAM: conserved hypothetical protein; KEGG: dfe:Dfer_5123 hypothetical protein; SPTR: uncharacterized protein; glycosyltransferase 160177..161283 Runella slithyformis DSM 19594 10868632 YP_004653714.1 CDS Runsl_0124 NC_015703.1 161392 161784 R COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: cfa:484681 sulfatase modifying factor 1; PFAM: Sulphatase-modifying factor; SPTR: Sulfatase-modifying factor 1; hypothetical protein complement(161392..161784) Runella slithyformis DSM 19594 10868633 YP_004653715.1 CDS Runsl_0125 NC_015703.1 161803 162903 D PFAM: Formylglycine-generating sulfatase enzyme; InterPro IPR019882; KEGG: bse:Bsel_0595 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03643; sulfatase-modifying factor protein 161803..162903 Runella slithyformis DSM 19594 10868634 YP_004653716.1 CDS Runsl_0126 NC_015703.1 162968 163240 D PFAM: Protein of unknown function (DUF2805); TIGRFAM: TIGR03643 family protein; InterPro IPR007362; KEGG: rmr:Rmar_1416 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 162968..163240 Runella slithyformis DSM 19594 10868635 YP_004653717.1 CDS Runsl_0127 NC_015703.1 163240 163851 D PFAM: Protein of unknown function (DUF429); InterPro IPR017136; KEGG: azl:AZL_a03980 hypothetical protein; PFAM: Uncharacterised conserved protein UCP037205; SPTR: uncharacterized protein; manually curated; hypothetical protein 163240..163851 Runella slithyformis DSM 19594 10868636 YP_004653718.1 CDS Runsl_0128 NC_015703.1 163855 164007 D PFAM: Uncharacterized protein conserved in bacteria (DUF2256); COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692; KEGG: sli:Slin_4469 peptidase S45 penicillin amidase; PFAM: Peptidase S45, penicillin amidase; PRIAM: Glutaryl-7-aminocephalosporanic-acid acylase; SPTR: Peptidase S45 penicillin amidase; hypothetical protein 163855..164007 Runella slithyformis DSM 19594 10868637 YP_004653719.1 CDS Runsl_0129 NC_015703.1 164265 166460 D PFAM: Penicillin amidase; COGs: COG1196 Chromosome segregation ATPase; KEGG: dfe:Dfer_3800 hypothetical protein; SPTR: uncharacterized protein; glutaryl-7-aminocephalosporanic-acid acylase 164265..166460 Runella slithyformis DSM 19594 10868638 YP_004653720.1 CDS Runsl_0130 NC_015703.1 166772 170197 D KEGG: sli:Slin_2262 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 166772..170197 Runella slithyformis DSM 19594 10868639 YP_004653721.1 CDS Runsl_0131 NC_015703.1 170312 171487 D KEGG: sli:Slin_1854 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 170312..171487 Runella slithyformis DSM 19594 10868640 YP_004653722.1 CDS Runsl_0132 NC_015703.1 171570 172094 D PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family; KEGG: sli:Slin_3077 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 171570..172094 Runella slithyformis DSM 19594 10868641 YP_004653723.1 CDS Runsl_0133 NC_015703.1 172142 172996 D KEGG: dfe:Dfer_2687 hypothetical protein; hypothetical protein 172142..172996 Runella slithyformis DSM 19594 10868642 YP_004653724.1 CDS Runsl_0134 NC_015703.1 173032 173283 R COGs: COG0297 Glycogen synthase; InterPro IPR013534; KEGG: dfe:Dfer_4558 starch synthase catalytic domain protein; PFAM: Starch synthase catalytic region; PRIAM: Starch synthase; SPTR: Starch synthase catalytic domain protein; hypothetical protein complement(173032..173283) Runella slithyformis DSM 19594 10868643 YP_004653725.1 CDS Runsl_0135 NC_015703.1 173437 174246 D PFAM: Starch synthase catalytic domain; KEGG: fjo:Fjoh_1685 hypothetical protein; SPTR: Hypothetical lipoprotein; starch synthase 173437..174246 Runella slithyformis DSM 19594 10868644 YP_004653726.1 CDS Runsl_0136 NC_015703.1 174230 175588 D COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; HAMAP: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; InterPro IPR005855:IPR000583:IPR001347; KEGG: sli:Slin_4464 glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: Sugar isomerase (SIS); Glutamine amidotransferase, class-II; PRIAM: Glutamine--fructose-6-phosphate transaminase (isomerizing); SPTR: Glucosamine/fructose-6-phosphate aminotransferase, isomerizing; TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; hypothetical protein 174230..175588 Runella slithyformis DSM 19594 10868645 YP_004653727.1 CDS Runsl_0137 NC_015703.1 175796 177634 D PFAM: SIS domain; Glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing); InterPro IPR006311:IPR013097; KEGG: dfe:Dfer_1578 stress responsive alpha-beta barrel domain protein; PFAM: Stress responsive alpha-beta barrel; SPTR: Stress responsive alpha-beta barrel domain protein; glucosamine--fructose-6-phosphate aminotransferase 175796..177634 Runella slithyformis DSM 19594 10868646 YP_004653728.1 CDS Runsl_0138 NC_015703.1 177697 178101 D PFAM: Stress responsive A/B Barrel Domain; COGs: COG2154 Pterin-4a-carbinolamine dehydratase; InterPro IPR001533; KEGG: sli:Slin_2232 transcriptional coactivator/pterin dehydratase; PFAM: Transcriptional coactivator/pterin dehydratase; SPTR: Transcriptional coactivator/pterin dehydratase; stress responsive alpha-beta barrel domain-containing protein 177697..178101 Runella slithyformis DSM 19594 10868647 YP_004653729.1 CDS Runsl_0139 NC_015703.1 178195 178434 D PFAM: Pterin 4 alpha carbinolamine dehydratase; transcriptional coactivator/pterin dehydratase 178195..178434 Runella slithyformis DSM 19594 10868648 YP_004653730.1 CDS Runsl_0140 NC_015703.1 178538 178981 R COGs: COG0712 F0F1-type ATP synthase delta subunit (mitochondrial oligomycin sensitivity protein); HAMAP: ATPase, F1 complex, OSCP/delta subunit; InterPro IPR000711; KEGG: dfe:Dfer_5022 ATP synthase F1, delta subunit; PFAM: ATPase, F1 complex, OSCP/delta subunit; SPTR: ATP synthase subunit delta; TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; hypothetical protein complement(178538..178981) Runella slithyformis DSM 19594 10868649 YP_004653731.1 CDS Runsl_0141 NC_015703.1 179103 179639 R PFAM: ATP synthase delta (OSCP) subunit; TIGRFAM: ATP synthase, F1 delta subunit; COGs: COG0711 F0F1-type ATP synthase subunit b; HAMAP: ATP synthase subunit b; InterPro IPR005864:IPR002146; KEGG: sli:Slin_3214 ATP synthase F0 subunit beta; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; SPTR: ATP synthase subunit b; TIGRFAM: ATPase, F0 complex, subunit B, bacterial; ATP synthase subunit delta complement(179103..179639) Runella slithyformis DSM 19594 10868650 YP_004653732.1 CDS Runsl_0142 NC_015703.1 179704 180198 R PFAM: ATP synthase B/B' CF(0); TIGRFAM: ATP synthase, F0 subunit b; HAMAP: ATPase, F0 complex, subunit C; InterPro IPR005953:IPR000454:IPR002379; KEGG: lby:Lbys_3611 ATP synthase f0 subcomplex C subunit; PFAM: ATPase, F0/V0 complex, subunit C; SPTR: ATP synthase subunit c; TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; ATP synthase subunit b complement(179704..180198) Runella slithyformis DSM 19594 10868651 YP_004653733.1 CDS Runsl_0143 NC_015703.1 180312 180575 R PFAM: ATP synthase subunit C; TIGRFAM: ATP synthase, F0 subunit c; COGs: COG0356 F0F1-type ATP synthase subunit a; HAMAP: ATP synthase subunit a; InterPro IPR000568; KEGG: sli:Slin_3216 ATP synthase F0 subunit alpha; PFAM: ATPase, F0 complex, subunit A; SPTR: ATP synthase subunit a; TIGRFAM: ATPase, F0 complex, subunit A; ATP synthase subunit c complement(180312..180575) Runella slithyformis DSM 19594 10868652 YP_004653734.1 CDS Runsl_0144 NC_015703.1 180634 181731 R PFAM: ATP synthase A chain; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); KEGG: dfe:Dfer_5026 hypothetical protein; SPTR: uncharacterized protein; ATP synthase subunit a complement(180634..181731) Runella slithyformis DSM 19594 10868653 YP_004653735.1 CDS Runsl_0145 NC_015703.1 181770 182135 R KEGG: sli:Slin_3218 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(181770..182135) Runella slithyformis DSM 19594 10868654 YP_004653736.1 CDS Runsl_0146 NC_015703.1 182226 182444 R InterPro IPR013099; KEGG: sli:Slin_0210 K channel inward rectifier conserved region 2 domain protein; PFAM: Ion transport 2; SPTR: K channel inward rectifier conserved region 2 domain protein; hypothetical protein complement(182226..182444) Runella slithyformis DSM 19594 10868655 YP_004653737.1 CDS Runsl_0147 NC_015703.1 182480 183466 R PFAM: Inward rectifier potassium channel; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_2236 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; ion transport 2 domain-containing protein complement(182480..183466) Runella slithyformis DSM 19594 10868656 YP_004653738.1 CDS Runsl_0148 NC_015703.1 183473 184585 D PFAM: Glycosyl transferase 2; COGs: COG0084 Mg-dependent DNase; InterPro IPR015991:IPR001130; KEGG: dfe:Dfer_5476 hydrolase, TatD family; PFAM: Deoxyribonuclease, TatD-related; SPTR: Hydrolase, TatD family; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; family 2 glycosyl transferase 183473..184585 Runella slithyformis DSM 19594 10868657 YP_004653739.1 CDS Runsl_0149 NC_015703.1 184666 185430 D PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family; COGs: COG0252 L-asparaginase/ Glu-tRNAGln amidotransferase subunit D; InterPro IPR006033:IPR006034; KEGG: dfe:Dfer_5475 L-asparaginase, type I; PFAM: Asparaginase/glutaminase; PRIAM: 1-alkyl-2-acetylglycerophosphocholine esterase; SPTR: L-asparaginase, type I; TIGRFAM: L-asparaginase, type I; TatD family hydrolase 184666..185430 Runella slithyformis DSM 19594 10868658 YP_004653740.1 CDS Runsl_0150 NC_015703.1 185463 186533 D PFAM: Asparaginase; TIGRFAM: L-asparaginases, type I; InterPro IPR019223; KEGG: cpi:Cpin_6391 signal peptide protein; PFAM: Protein of unknown function DUF2147; SPTR: signal peptide protein; type I L-asparaginase 185463..186533 Runella slithyformis DSM 19594 10868659 YP_004653741.1 CDS Runsl_0151 NC_015703.1 186599 187033 D PFAM: Uncharacterized protein conserved in bacteria (DUF2147); InterPro IPR004993; KEGG: sli:Slin_1664 GH3 auxin-responsive promoter; PFAM: GH3 auxin-responsive promoter; SPTR: GH3 auxin-responsive promoter; hypothetical protein 186599..187033 Runella slithyformis DSM 19594 10868660 YP_004653742.1 CDS Runsl_0152 NC_015703.1 187192 188769 R PFAM: GH3 auxin-responsive promoter; COGs: COG0496 acid phosphatase; HAMAP: Multifunctional protein surE; InterPro IPR002828; KEGG: sli:Slin_1665 stationary-phase survival protein SurE; PFAM: Survival protein SurE-like phosphatase/nucleotidase; SPTR: 5'-nucleotidase surE; TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; GH3 auxin-responsive promoter complement(187192..188769) Runella slithyformis DSM 19594 10868661 YP_004653743.1 CDS Runsl_0153 NC_015703.1 188880 189677 R PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE; COGs: COG2217 Cation transport ATPase; InterProIPR006403:IPR006416:IPR001757:IPR006121:IPR 008250:IPR005834; KEGG: phe:Phep_3058 copper-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Copper-translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; bifunctional 5'-3'-nucleotidase/exopolyphosphatase SurE complement(188880..189677) Runella slithyformis DSM 19594 10868662 YP_004653744.1 CDS Runsl_0154 NC_015703.1 189953 192169 D PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: zpr:ZPR_3369 hypothetical protein; SPTR: Protein containing heavy-metal-associated domain; heavy metal translocating P-type ATPase 189953..192169 Runella slithyformis DSM 19594 10868663 YP_004653745.1 CDS Runsl_0155 NC_015703.1 192251 192460 D PFAM: Heavy-metal-associated domain; manually curated; hypothetical protein 192251..192460 Runella slithyformis DSM 19594 10868664 YP_004653746.1 CDS Runsl_0157 NC_015703.1 192964 194307 D PFAM: BNR/Asp-box repeat; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sli:Slin_1432 sulfatase; PFAM: Sulfatase; SPTR: Sulfatase; glycosyl hydrolase 192964..194307 Runella slithyformis DSM 19594 10868666 YP_004653747.1 CDS Runsl_0158 NC_015703.1 194511 196025 D PFAM: Sulfatase; COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated; sulfatase 194511..196025 Runella slithyformis DSM 19594 10868667 YP_004653748.1 CDS Runsl_0159 NC_015703.1 196550 197561 R PFAM: Rhodopirellula transposase; 'Paired box' domain; COGs: COG1054 sulfurtransferase; HAMAP: UPF0176 protein yceA; InterPro IPR001763; KEGG: dfe:Dfer_0476 hypothetical protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: UPF0176 protein Dfer_0476; transposase complement(join(196550..197095,197097..197561)) Runella slithyformis DSM 19594 10868668 YP_004653749.1 CDS Runsl_0160 NC_015703.1 198023 198997 R PFAM: Rhodanese-like domain; COGs: COG1428 Deoxynucleoside kinase; InterPro IPR002624; KEGG: dfe:Dfer_0477 deoxynucleoside kinase; PFAM: Deoxynucleoside kinase; PRIAM: Deoxyadenosine kinase; SPTR: Deoxynucleoside kinase; hypothetical protein complement(198023..198997) Runella slithyformis DSM 19594 10868669 YP_004653750.1 CDS Runsl_0161 NC_015703.1 199249 199863 D PFAM: Deoxynucleoside kinase; COGs: COG0208 Ribonucleotide reductase beta subunit; InterPro IPR000358; KEGG: sli:Slin_5045 ribonucleoside-diphosphate reductase; PFAM: Ribonucleotide reductase; PRIAM: Ribonucleoside-diphosphate reductase; SPTR: Ribonucleoside-diphosphate reductase; deoxyadenosine kinase 199249..199863 Runella slithyformis DSM 19594 10868670 YP_004653751.1 CDS Runsl_0162 NC_015703.1 199977 200972 R PFAM: Ribonucleotide reductase, small chain; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: ppn:Palpr_1950 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; ribonucleoside-diphosphate reductase complement(199977..200972) Runella slithyformis DSM 19594 10868671 YP_004653752.1 CDS Runsl_0163 NC_015703.1 201209 201976 D PFAM: Polysaccharide deacetylase; COGs: COG3616 amino acid aldolase or racemase; InterPro IPR001608; KEGG: dfe:Dfer_1026 alanine racemase domain protein; PFAM: Alanine racemase, N-terminal; SPTR: Alanine racemase domain protein; polysaccharide deacetylase 201209..201976 Runella slithyformis DSM 19594 10868672 YP_004653753.1 CDS Runsl_0164 NC_015703.1 202028 203143 D PFAM: Alanine racemase, N-terminal domain; COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: dfe:Dfer_4951 heat shock protein HSP20; PFAM: Heat shock protein Hsp20; SPTR: Heat shock protein Hsp20; alanine racemase 202028..203143 Runella slithyformis DSM 19594 10868673 YP_004653754.1 CDS Runsl_0165 NC_015703.1 203230 203646 R PFAM: Hsp20/alpha crystallin family; KEGG: dfe:Dfer_4952 hypothetical protein; SPTR: uncharacterized protein; heat shock protein Hsp20 complement(203230..203646) Runella slithyformis DSM 19594 10868674 YP_004653755.1 CDS Runsl_0166 NC_015703.1 203892 204146 R hypothetical protein complement(203892..204146) Runella slithyformis DSM 19594 10868675 YP_004653756.1 CDS Runsl_0167 NC_015703.1 204236 204880 D COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_4954 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein 204236..204880 Runella slithyformis DSM 19594 10868676 YP_004653757.1 CDS Runsl_0168 NC_015703.1 204859 205407 R PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692; KEGG: mtt:Ftrac_0457 acyl-homoserine-lactone acylase; PFAM: Peptidase S45, penicillin amidase; SPTR: Acyl-homoserine-lactone acylase; ECF subfamily RNA polymerase sigma-24 subunit complement(204859..205407) Runella slithyformis DSM 19594 10868677 YP_004653758.1 CDS Runsl_0169 NC_015703.1 205571 207604 R PFAM: Penicillin amidase; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: sli:Slin_5859 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: AMP-dependent synthetase and ligase; peptidase S45 penicillin amidase complement(205571..207604) Runella slithyformis DSM 19594 10868678 YP_004653759.1 CDS Runsl_0170 NC_015703.1 207766 209478 D PFAM: AMP-binding enzyme; COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: dal:Dalk_1296 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase domain protein; long-chain-fatty-acid--CoA ligase 207766..209478 Runella slithyformis DSM 19594 10868679 YP_004653760.1 CDS Runsl_0171 NC_015703.1 209545 211344 D PFAM: Acyl-CoA dehydrogenase N terminal; Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; COGs: COG0686 Alanine dehydrogenase; InterPro IPR008141:IPR007886:IPR007698; KEGG: sli:Slin_2902 alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal; PRIAM: Alanine dehydrogenase; SPTR: Alanine dehydrogenase; TIGRFAM: Alanine dehydrogenase/pyridine nucleotide transhydrogenase; butyryl-CoA dehydrogenase 209545..211344 Runella slithyformis DSM 19594 10868680 YP_004653761.1 CDS Runsl_0172 NC_015703.1 211851 212981 R PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase; COGs: COG1522 Transcriptional regulators; InterPro IPR019888:IPR019887; KEGG: dfe:Dfer_0204 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type; SPTR: Transcriptional regulator, AsnC family; alanine dehydrogenase complement(211851..212981) Runella slithyformis DSM 19594 10868681 YP_004653762.1 CDS Runsl_0173 NC_015703.1 213223 213681 D PFAM: MarR family; AsnC family; COGs: COG1165 2-succinyl-6-hydroxy-2 4-cyclohexadiene-1-carboxylate synthase; HAMAP: Menaquinone biosynthesis protein MenD; InterPro IPR004433:IPR012001; KEGG: sli:Slin_1992 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; PRIAM:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex ene-1-carboxylic-acidsynthase; SPTR:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexe ne-1-carboxylatesynthase; TIGRFAM: Menaquinone biosynthesis protein MenD; AsnC family transcriptional regulator 213223..213681 Runella slithyformis DSM 19594 10868682 YP_004653763.1 CDS Runsl_0174 NC_015703.1 213764 215488 D PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; TIGRFAM: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: aoe:Clos_1084 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 213764..215488 Runella slithyformis DSM 19594 10868683 YP_004653764.1 CDS Runsl_0175 NC_015703.1 215485 216141 R PFAM: Methyltransferase domain; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: dfe:Dfer_2674 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; type 11 methyltransferase complement(215485..216141) Runella slithyformis DSM 19594 10868684 YP_004653765.1 CDS Runsl_0176 NC_015703.1 216393 217802 D PFAM: OmpA family; KEGG: sli:Slin_1179 lipoprotein; SPTR: lipoprotein; OmpA/MotB domain-containing protein 216393..217802 Runella slithyformis DSM 19594 10868685 YP_004653766.1 CDS Runsl_0177 NC_015703.1 217799 218683 D InterPro IPR013217; KEGG: axy:AXYL_06309 methyltransferase domain-containing protein 11; PFAM: Methyltransferase type 12; SPTR: Methyltransferase domain protein 11; lipoprotein 217799..218683 Runella slithyformis DSM 19594 10868686 YP_004653767.1 CDS Runsl_0178 NC_015703.1 219037 219762 D PFAM: Methyltransferase domain; COGs: COG5305 membrane protein; InterPro IPR003342; KEGG: sli:Slin_2543 hypothetical protein; PFAM: Glycosyl transferase, family 39; SPTR: Membrane protein-like protein; type 12 methyltransferase 219037..219762 Runella slithyformis DSM 19594 10868687 YP_004653768.1 CDS Runsl_0179 NC_015703.1 219801 221570 D PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase; KEGG: dfe:Dfer_5126 hypothetical protein; SPTR: uncharacterized protein; glycosyl transferase family protein 219801..221570 Runella slithyformis DSM 19594 10868688 YP_004653769.1 CDS Runsl_0180 NC_015703.1 221731 222021 R COGs: COG1398 Fatty-acid desaturase; InterPro IPR005804; KEGG: chu:CHU_1136 fatty acid desaturase; PFAM: Fatty acid desaturase, type 1; SPTR: Fatty acid desaturase; hypothetical protein complement(221731..222021) Runella slithyformis DSM 19594 10868689 YP_004653770.1 CDS Runsl_0181 NC_015703.1 222136 222888 D PFAM: Fatty acid desaturase; COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; InterPro IPR000672:IPR020630:IPR020631; KEGG: dfe:Dfer_1212 methenyltetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; PRIAM: Methenyltetrahydrofolate cyclohydrolase; SPTR: Bifunctional protein FolD; fatty acid desaturase 222136..222888 Runella slithyformis DSM 19594 10868690 YP_004653771.1 CDS Runsl_0182 NC_015703.1 222983 223864 R PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; HAMAP: NAD-dependent deacetylase; InterPro IPR003000; KEGG: sli:Slin_2032 silent information regulator protein Sir2; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; SPTR: Silent information regulator protein Sir2; bifunctional protein folD complement(222983..223864) Runella slithyformis DSM 19594 10868691 YP_004653772.1 CDS Runsl_0183 NC_015703.1 224008 224712 R PFAM: Sir2 family; NAD-dependent deacetylase complement(224008..224712) Runella slithyformis DSM 19594 10868692 YP_004653773.1 CDS Runsl_0184 NC_015703.1 224792 225406 D COGs: COG0137 Argininosuccinate synthase; InterPro IPR001518; KEGG: dfe:Dfer_4424 argininosuccinate synthase; PFAM: Argininosuccinate synthase; PRIAM: Argininosuccinate synthase; SPTR: Argininosuccinate synthase; TIGRFAM: Argininosuccinate synthase; hypothetical protein 224792..225406 Runella slithyformis DSM 19594 10868693 YP_004653774.1 CDS Runsl_0185 NC_015703.1 225767 226966 R PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase; KEGG: dfe:Dfer_4427 hypothetical protein; SPTR: uncharacterized protein; argininosuccinate synthase complement(225767..226966) Runella slithyformis DSM 19594 10868694 YP_004653775.1 CDS Runsl_0186 NC_015703.1 227347 228057 R COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR006584:IPR003088:IPR005084; KEGG: sli:Slin_3440 PKD domain containing protein; PFAM: PKD; Cytochrome c, class I; Carbohydrate binding domain, family 6; SMART: PKD; Cellulose binding, type IV; SPTR: PKD domain containing protein; hypothetical protein complement(227347..228057) Runella slithyformis DSM 19594 10868695 YP_004653776.1 CDS Runsl_0187 NC_015703.1 228572 231292 D PFAM: Cytochrome c; Carbohydrate binding module (family 6); PKD domain; InterPro IPR000866; KEGG: dfe:Dfer_3156 hypothetical protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein; PKD domain-containing protein 228572..231292 Runella slithyformis DSM 19594 10868696 YP_004653777.1 CDS Runsl_0188 NC_015703.1 231593 233074 D InterPro IPR016047; KEGG: sli:Slin_0667 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23; alkyl hydroperoxide reductase 231593..233074 Runella slithyformis DSM 19594 10868697 YP_004653778.1 CDS Runsl_0189 NC_015703.1 233163 233909 R PFAM: Peptidase M23; COGs: COG3386 Gluconolactonase; InterPro IPR013658; KEGG: dfe:Dfer_4886 SMP-30/gluconolaconase/LRE domain protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; SPTR: SMP-30/Gluconolaconase/LRE domain protein; peptidase M23 complement(233163..233909) Runella slithyformis DSM 19594 10868698 YP_004653779.1 CDS Runsl_0190 NC_015703.1 233917 234828 R PFAM: SMP-30/Gluconolaconase/LRE-like region; COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: sli:Slin_5957 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SMP-30/gluconolaconase/LRE-like region-containing protein complement(233917..234828) Runella slithyformis DSM 19594 10868699 YP_004653780.1 CDS Runsl_0191 NC_015703.1 234960 236078 R PFAM: AhpC/TSA family; KEGG: sli:Slin_0953 hypothetical protein; SPTR: uncharacterized protein; alkyl hydroperoxide reductase complement(234960..236078) Runella slithyformis DSM 19594 10868700 YP_004653781.1 CDS Runsl_0192 NC_015703.1 236208 237215 R KEGG: dfe:Dfer_2825 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(236208..237215) Runella slithyformis DSM 19594 10868701 YP_004653782.1 CDS Runsl_0193 NC_015703.1 237227 237397 R COGs: COG1983 stress-responsive transcriptional regulator protein; InterPro IPR007168; KEGG: dfe:Dfer_2824 phage shock protein C, PspC; PFAM: PspC; SPTR: Phage shock protein C, PspC; hypothetical protein complement(237227..237397) Runella slithyformis DSM 19594 10868702 YP_004653783.1 CDS Runsl_0194 NC_015703.1 237496 238053 R PFAM: PspC domain; InterPro IPR000182; KEGG: maq:Maqu_2923 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; phage shock protein PspC complement(237496..238053) Runella slithyformis DSM 19594 10868703 YP_004653784.1 CDS Runsl_0195 NC_015703.1 238252 238722 R PFAM: Acetyltransferase (GNAT) family; COGs: COG0498 Threonine synthase; InterPro IPR004450:IPR001926; KEGG: dfe:Dfer_3806 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Threonine synthase; SPTR: Threonine synthase; TIGRFAM: Threonine synthase; N-acetyltransferase GCN5 complement(238252..238722) Runella slithyformis DSM 19594 10868704 YP_004653785.1 CDS Runsl_0196 NC_015703.1 238743 240044 R PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase; threonine synthase complement(238743..240044) Runella slithyformis DSM 19594 10868705 YP_004653786.1 CDS Runsl_0197 NC_015703.1 245781 246500 R PFAM: GlcNAc-PI de-N-acetylase; TIGRFAM: bacillithiol biosynthesis deacetylase BshB1; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR002482:IPR016047:IPR018392; KEGG: sli:Slin_1779 peptidase M23; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Peptidase M23; LmbE family protein complement(245781..246500) Runella slithyformis DSM 19594 10868712 YP_004653787.1 CDS Runsl_0198 NC_015703.1 246507 247634 R PFAM: Peptidase M23; LysM domain; COGs: COG0492 Thioredoxin reductase; InterPro IPR005982:IPR013027; KEGG: dfe:Dfer_0086 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Thioredoxin-disulfide reductase; SPTR: Thioredoxin reductase; TIGRFAM: Thioredoxin reductase; peptidase M23 complement(246507..247634) Runella slithyformis DSM 19594 10868713 YP_004653788.1 CDS Runsl_0199 NC_015703.1 247662 248603 R PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR019734:IPR011659:IPR006665; KEGG: sli:Slin_1781 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SMART: Tetratricopeptide repeat; SPTR: OmpA/MotB domain protein; thioredoxin reductase complement(247662..248603) Runella slithyformis DSM 19594 10868714 YP_004653789.1 CDS Runsl_0200 NC_015703.1 248772 250778 R PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG0602 Organic radical activating protein; InterPro IPR007197; KEGG: lby:Lbys_1123 radical sam domain protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein; OmpA/MotB domain-containing protein complement(248772..250778) Runella slithyformis DSM 19594 10868715 YP_004653790.1 CDS Runsl_0201 NC_015703.1 250733 251335 R PFAM: Radical SAM superfamily; COGs: COG0176 Transaldolase; InterPro IPR000644:IPR001585; KEGG: sgg:SGGBAA2069_c21100 transaldolase; PFAM: Cystathionine beta-synthase, core; Transaldolase; SMART: Cystathionine beta-synthase, core; SPTR: Transaldolase; radical SAM protein complement(250733..251335) Runella slithyformis DSM 19594 10868716 YP_004653791.1 CDS Runsl_0202 NC_015703.1 251424 252431 R PFAM: CBS domain; Transaldolase; TIGRFAM: fructose-6-phosphate aldolase, TalC/MipB family; InterPro IPR012480; KEGG: bfs:BF0747 hypothetical protein; PFAM: Heparinase II/III-like; SPTR: uncharacterized protein; hypothetical protein complement(251424..252431) Runella slithyformis DSM 19594 10868717 YP_004653792.1 CDS Runsl_0203 NC_015703.1 252536 254509 R PFAM: Heparinase II/III-like protein; KEGG: dfe:Dfer_3951 hypothetical protein; SPTR: uncharacterized protein; heparinase II/III family protein complement(252536..254509) Runella slithyformis DSM 19594 10868718 YP_004653793.1 CDS Runsl_0204 NC_015703.1 254573 255031 R InterPro IPR000923; KEGG: sli:Slin_1172 blue (type 1) copper domain protein; PFAM: Blue (type 1) copper domain; SPTR: Blue (Type 1) copper domain protein; hypothetical protein complement(254573..255031) Runella slithyformis DSM 19594 10868719 YP_004653794.1 CDS Runsl_0205 NC_015703.1 255225 256310 D PFAM: Copper binding proteins, plastocyanin/azurin family; KEGG: sli:Slin_1171 glucose/sorbosone dehydrogenase; SPTR: Glucose/sorbosone dehydrogenase-like protein; blue (type 1) copper domain-containing protein 255225..256310 Runella slithyformis DSM 19594 10868720 YP_004653795.1 CDS Runsl_0206 NC_015703.1 256358 257860 D COGs: COG2273 Beta-glucanase/Beta-glucan synthetase; InterPro IPR000757; KEGG: sli:Slin_6434 glycoside hydrolase 16; PFAM: Glycoside hydrolase, family 16; PRIAM: Glucan endo-1,3-beta-D-glucosidase; SPTR: Glycoside hydrolase 16; glucose/sorbosone dehydrogenase 256358..257860 Runella slithyformis DSM 19594 10868721 YP_004653796.1 CDS Runsl_0207 NC_015703.1 257861 258700 R PFAM: Glycosyl hydrolases family 16; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341:IPR013342; KEGG: sli:Slin_1934 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; PRIAM: Chloromuconate cycloisomerase; SPTR: Mandelate racemase/muconate lactonizing protein; glucan endo-1,3-beta-D-glucosidase complement(257861..258700) Runella slithyformis DSM 19594 10868722 YP_004653797.1 CDS Runsl_0208 NC_015703.1 258906 259985 R PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; COGs: COG3367 conserved hypothetical protein; InterPro IPR011669; KEGG: sli:Slin_1935 hypothetical protein; PFAM: Protein of unknown function DUF1611; SPTR: uncharacterized protein; chloromuconate cycloisomerase complement(258906..259985) Runella slithyformis DSM 19594 10868723 YP_004653798.1 CDS Runsl_0209 NC_015703.1 260033 261094 R PFAM: Protein of unknown function (DUF1611); COGs: COG3653 N-acyl-D-aspartate/D-glutamate deacylase; InterPro IPR001466:IPR006680:IPR012855; KEGG: sli:Slin_1936 beta-lactamase; PFAM: Beta-lactamase-related; Amidohydrolase 1; D-aminoacylase, C-terminal; SPTR: Beta-lactamase; hypothetical protein complement(260033..261094) Runella slithyformis DSM 19594 10868724 YP_004653799.1 CDS Runsl_0210 NC_015703.1 261178 263709 R PFAM: D-aminoacylase, C-terminal region; Beta-lactamase; Amidohydrolase; COGs: COG1522 Transcriptional regulators; InterPro IPR019888:IPR000835:IPR019887; KEGG: hmg:100207563 hypothetical protein LOC100207563; PFAM: Transcription regulator, AsnC-type, C-terminal; HTH transcriptional regulator, MarR; SMART: Transcription regulator, AsnC-type; SPTR: AsnC family transcriptional regulator; beta-lactamase complement(261178..263709) Runella slithyformis DSM 19594 10868725 YP_004653800.1 CDS Runsl_0211 NC_015703.1 263918 264373 D PFAM: MarR family; AsnC family; COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: sli:Slin_1771 amidohydrolase; PFAM: Amidohydrolase 1; SPTR: Amidohydrolase; AsnC family transcriptional regulator 263918..264373 Runella slithyformis DSM 19594 10868726 YP_004653801.1 CDS Runsl_0212 NC_015703.1 264496 267531 D PFAM: Amidohydrolase; COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: sli:Slin_1772 amidohydrolase; PFAM: Amidohydrolase 1; SPTR: Amidohydrolase; amidohydrolase 264496..267531 Runella slithyformis DSM 19594 10868727 YP_004653802.1 CDS Runsl_0213 NC_015703.1 267565 268965 D PFAM: Amidohydrolase; KEGG: cph:Cpha266_1734 hypothetical protein; SPTR: uncharacterized protein; amidohydrolase 267565..268965 Runella slithyformis DSM 19594 10868728 YP_004653803.1 CDS Runsl_0214 NC_015703.1 269049 269777 R Prodigal; manually curated; hypothetical protein complement(269049..269777) Runella slithyformis DSM 19594 10868729 YP_004653804.1 CDS Runsl_0216 NC_015703.1 271466 272350 R PFAM: NmrA-like family; InterPro IPR001647; KEGG: tbd:Tbd_0482 TetR family transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Possible Transcriptional Regulator, TetR family; NAD-dependent epimerase/dehydratase complement(271466..272350) Runella slithyformis DSM 19594 10868731 YP_004653805.1 CDS Runsl_0217 NC_015703.1 272430 273017 R PFAM: Bacterial regulatory proteins, tetR family; COGs: COG2308 conserved hypothetical protein; InterPro IPR007297:IPR007302; KEGG: sli:Slin_0231 hypothetical protein; PFAM: Protein of unknown function DUF404, bacteria N-terminal; Protein of unknown function DUF407; SPTR: uncharacterized protein; TetR family transcriptional regulator complement(272430..273017) Runella slithyformis DSM 19594 10868732 YP_004653806.1 CDS Runsl_0218 NC_015703.1 273128 274558 R PFAM: Domain of unknown function (DUF407); Domain of unknown function (DUF404); KEGG: dfe:Dfer_4766 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(273128..274558) Runella slithyformis DSM 19594 10868733 YP_004653807.1 CDS Runsl_0219 NC_015703.1 274793 276334 D COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: cat:CA2559_05265 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR: Enoyl-CoA hydratase/isomerase; hypothetical protein 274793..276334 Runella slithyformis DSM 19594 10868734 YP_004653808.1 CDS Runsl_0220 NC_015703.1 276342 277106 D PFAM: Enoyl-CoA hydratase/isomerase; COGs: COG3021 conserved hypothetical protein; InterPro IPR005135; KEGG: cyp:PCC8801_0260 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; enoyl-CoA hydratase 276342..277106 Runella slithyformis DSM 19594 10868735 YP_004653809.1 CDS Runsl_0221 NC_015703.1 277108 278052 R PFAM: Endonuclease/Exonuclease/phosphatase; COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; InterPro IPR003593:IPR003959; KEGG: sli:Slin_0420 ATPase AAA; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: AAA ATPase central domain protein; hypothetical protein complement(277108..278052) Runella slithyformis DSM 19594 10868736 YP_004653810.1 CDS Runsl_0222 NC_015703.1 278025 279287 R PFAM: MgsA AAA+ ATPase C terminal; ATPase associated with various cellular activities (AAA); COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_5734 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; ATPase AAA complement(278025..279287) Runella slithyformis DSM 19594 10868737 YP_004653811.1 CDS Runsl_0223 NC_015703.1 279416 279997 R PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1001 Adenine deaminase; HAMAP: Adenine deaminase; InterPro IPR006679:IPR006680; KEGG: sli:Slin_0418 adenine deaminase; PFAM: Amidohydrolase 1; PRIAM: Adenine deaminase; SPTR: Adenine deaminase; TIGRFAM: Adenine deaminase; ECF subfamily RNA polymerase sigma-24 subunit complement(279416..279997) Runella slithyformis DSM 19594 10868738 YP_004653812.1 CDS Runsl_0224 NC_015703.1 280098 281741 R PFAM: Amidohydrolase; TIGRFAM: adenine deaminase; KEGG: dfe:Dfer_4816 hypothetical protein; SPTR: uncharacterized protein; adenine deaminase complement(280098..281741) Runella slithyformis DSM 19594 10868739 YP_004653813.1 CDS Runsl_0225 NC_015703.1 281908 282243 D KEGG: rbi:RB2501_01975 membrane associated hydrolase; SPTR: uncharacterized protein; hypothetical protein 281908..282243 Runella slithyformis DSM 19594 10868740 YP_004653814.1 CDS Runsl_0226 NC_015703.1 282330 284564 D Prodigal; manually curated; membrane associated hydrolase 282330..284564 Runella slithyformis DSM 19594 10868741 YP_004653815.1 CDS Runsl_0228 NC_015703.1 285015 286802 D PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; GTP-binding protein LepA C-terminus; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: scl:sce0505 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; GTP-binding protein LepA 285015..286802 Runella slithyformis DSM 19594 10868743 YP_004653816.1 CDS Runsl_0229 NC_015703.1 286815 287405 D PFAM: Protein of unknown function (DUF820); COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR006257:IPR000089:IPR004167:IPR001078; KEGG: dfe:Dfer_5625 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; E3 binding; Biotin/lipoyl attachment; PRIAM: Dihydrolipoyllysine-residue acetyltransferase; SPTR: Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; TIGRFAM: Dihydrolipoamide acetyltransferase, long form; hypothetical protein 286815..287405 Runella slithyformis DSM 19594 10868744 YP_004653817.1 CDS Runsl_0230 NC_015703.1 287523 289121 D PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; COGs: COG5405 ATP-dependent protease HslVU (ClpYQ) peptidase subunit; HAMAP: ATP-dependent protease hslV; InterPro IPR001353; KEGG: sli:Slin_2720 20S proteasome A and subunit betas; PFAM: Proteasome, subunit alpha/beta; SPTR: ATP-dependent protease subunit HslV; TIGRFAM: ATP-dependent protease HslVU, peptidase subunit; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 287523..289121 Runella slithyformis DSM 19594 10868745 YP_004653818.1 CDS Runsl_0231 NC_015703.1 289392 289940 D PFAM: Proteasome subunit; TIGRFAM: ATP-dependent protease HslVU, peptidase subunit; COGs: COG0193 Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; InterPro IPR001328; KEGG: dfe:Dfer_2675 peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; PRIAM: Aminoacyl-tRNA hydrolase; SPTR: Peptidyl-tRNA hydrolase; TIGRFAM: Peptidyl-tRNA hydrolase; ATP-dependent protease hslV 289392..289940 Runella slithyformis DSM 19594 10868746 YP_004653819.1 CDS Runsl_0232 NC_015703.1 289982 290542 D PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; KEGG: sli:Slin_3162 hypothetical protein; SPTR: uncharacterized protein; peptidyl-tRNA hydrolase 289982..290542 Runella slithyformis DSM 19594 10868747 YP_004653820.1 CDS Runsl_0233 NC_015703.1 290744 291247 D COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: swp:swp_1670 twin-arginine translocation pathway signal; PFAM: Oxidoreductase, N-terminal; PRIAM: Alpha-N-acetylgalactosaminidase; SPTR: Twin-arginine translocation pathway signal; hypothetical protein 290744..291247 Runella slithyformis DSM 19594 10868748 YP_004653821.1 CDS Runsl_0234 NC_015703.1 291363 292766 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; InterPro IPR008671; KEGG: cao:Celal_1771 lycopene beta and epsilon cyclase; PFAM: Lycopene beta/epsilon cyclase; SPTR: Lycopene beta and epsilon cyclase; alpha-N-acetylgalactosaminidase complement(291363..292766) Runella slithyformis DSM 19594 10868749 YP_004653822.1 CDS Runsl_0235 NC_015703.1 293064 294296 D PFAM: Lycopene cyclase; TIGRFAM: lycopene cyclase; KEGG: mtt:Ftrac_2394 beta-carotene 15,15'-monooxygenase, brp/blh family; SPTR: Beta-carotene 15,15'-monooxygenase, Brp/Blh family; TIGRFAM: beta-carotene 15,15'-monooxygenase, Brp/Blh family; Lycopene beta and epsilon cyclase 293064..294296 Runella slithyformis DSM 19594 10868750 YP_004653823.1 CDS Runsl_0236 NC_015703.1 294293 295153 D TIGRFAM: beta-carotene 15,15'-monooxygenase, Brp/Blh family; COGs: COG0143 Methionyl-tRNA synthetase; HAMAP: Methionyl-tRNA synthetase; InterPro IPR002304:IPR004495:IPR015413:IPR002547; KEGG: dfe:Dfer_2956 methionyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding region; PRIAM: Methionine--tRNA ligase; SPTR: Methionyl-tRNA synthetase; TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; Brp/Blh family beta-carotene 15,15'-monooxygenase 294293..295153 Runella slithyformis DSM 19594 10868751 YP_004653824.1 CDS Runsl_0237 NC_015703.1 295223 297292 R PFAM: Anticodon-binding domain; tRNA synthetases class I (M); tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; methionyl-tRNA synthetase; methionyl-tRNA synthetase complement(295223..297292) Runella slithyformis DSM 19594 10868752 YP_004653825.1 CDS Runsl_0238 NC_015703.1 297573 297764 D InterPro IPR001425; KEGG: sli:Slin_1643 rhodopsin; PFAM: Rhodopsin, bacterial; SPTR: Rhodopsin; hypothetical protein 297573..297764 Runella slithyformis DSM 19594 10868753 YP_004653826.1 CDS Runsl_0239 NC_015703.1 298141 298905 D PFAM: Bacteriorhodopsin-like protein; COGs: COG1106 ATPase; KEGG: sli:Slin_1472 ATPase; SPTR: ATPase-like protein; rhodopsin 298141..298905 Runella slithyformis DSM 19594 10868754 YP_004653827.1 CDS Runsl_0240 NC_015703.1 299077 300075 D KEGG: sli:Slin_1473 hypothetical protein; SPTR: uncharacterized protein; ATPase 299077..300075 Runella slithyformis DSM 19594 10868755 YP_004653828.1 CDS Runsl_0241 NC_015703.1 300068 300571 D COGs: COG0691 tmRNA-binding protein; HAMAP: SsrA-binding protein; InterPro IPR000037; KEGG: lby:Lbys_2545 SsrA-binding protein; PFAM: SsrA-binding protein; SPTR: SsrA-binding protein; TIGRFAM: SsrA-binding protein; hypothetical protein 300068..300571 Runella slithyformis DSM 19594 10868756 YP_004653829.1 CDS Runsl_0242 NC_015703.1 300779 301216 R PFAM: SmpB protein; TIGRFAM: SsrA-binding protein; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR001375; KEGG: sus:Acid_3737 peptidase S9 prolyl oligopeptidase; SPTR: Acylaminoacyl-peptidase; SsrA-binding protein complement(300779..301216) Runella slithyformis DSM 19594 10868757 YP_004653830.1 CDS Runsl_0243 NC_015703.1 301444 304431 D PFAM: Prolyl oligopeptidase; COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: sli:Slin_3590 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; peptidase S9 prolyl oligopeptidase 301444..304431 Runella slithyformis DSM 19594 10868758 YP_004653831.1 CDS Runsl_0244 NC_015703.1 304499 305023 R PFAM: Acetyltransferase (GNAT) family; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: sli:Slin_4876 ABC transporter; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; N-acetyltransferase GCN5 complement(304499..305023) Runella slithyformis DSM 19594 10868759 YP_004653832.1 CDS Runsl_0245 NC_015703.1 305180 306061 D PFAM: ABC transporter; InterPro IPR014782; KEGG: sli:Slin_4874 hypothetical protein; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; SPTR: uncharacterized protein; phosphonate-transporting ATPase 305180..306061 Runella slithyformis DSM 19594 10868760 YP_004653833.1 CDS Runsl_0246 NC_015703.1 306083 309748 D PFAM: Peptidase M1; Prodigal; manually curated; peptidase M1 membrane alanine aminopeptidase 306083..309748 Runella slithyformis DSM 19594 10868761 YP_004653834.1 CDS Runsl_0248 NC_015703.1 311325 312251 D PFAM: Xylose isomerase-like TIM barrel; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: sli:Slin_0240 radical SAM protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein; xylose isomerase domain-containing protein 311325..312251 Runella slithyformis DSM 19594 10868763 YP_004653835.1 CDS Runsl_0249 NC_015703.1 312375 313397 D PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: lby:Lbys_2061 short-chain dehydrogenase/reductase sdr; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; radical SAM protein 312375..313397 Runella slithyformis DSM 19594 10868764 YP_004653836.1 CDS Runsl_0250 NC_015703.1 313629 314420 D PFAM: short chain dehydrogenase; COGs: COG0738 Fucose permease; InterPro IPR005275:IPR011701; KEGG: sli:Slin_1494 L-fucose transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: L-fucose transporter; TIGRFAM: L-fucose permease; 3-oxoacyl-ACP reductase 313629..314420 Runella slithyformis DSM 19594 10868765 YP_004653837.1 CDS Runsl_0251 NC_015703.1 314491 315708 D PFAM: Major Facilitator Superfamily; TIGRFAM: L-fucose:H+ symporter permease; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: phe:Phep_0675 cellulase; PFAM: Polysaccharide deacetylase; SPTR: Cellulase; L-fucose transporter 314491..315708 Runella slithyformis DSM 19594 10868766 YP_004653838.1 CDS Runsl_0252 NC_015703.1 315839 316597 R PFAM: Polysaccharide deacetylase; COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001:IPR001650:IPR000330; KEGG: dfe:Dfer_0265 non-specific serine/threonine protein kinase; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Snf2 family protein; polysaccharide deacetylase complement(315839..316597) Runella slithyformis DSM 19594 10868767 YP_004653839.1 CDS Runsl_0253 NC_015703.1 316649 320014 R PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain; COGs: COG2114 Adenylate cyclase 3 (some protein contain HAMP domain); InterPro IPR001789:IPR001054; KEGG: dfe:Dfer_1110 adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; Adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: Adenylate/guanylate cyclase; SNF2-like protein complement(316649..320014) Runella slithyformis DSM 19594 10868768 YP_004653840.1 CDS Runsl_0254 NC_015703.1 320159 321193 R PFAM: Adenylate and Guanylate cyclase catalytic domain; Response regulator receiver domain; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: dfe:Dfer_1111 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; guanylate cyclase complement(320159..321193) Runella slithyformis DSM 19594 10868769 YP_004653841.1 CDS Runsl_0255 NC_015703.1 321205 321579 R PFAM: Response regulator receiver domain; COGs: COG1979 Uncharacterized oxidoreductase Fe-dependent alcohol dehydrogenase; InterPro IPR001670; KEGG: ava:Ava_2489 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type; PRIAM: Alcohol dehydrogenase (NADP(+)); SPTR: Iron-containing alcohol dehydrogenase; response regulator receiver protein complement(321205..321579) Runella slithyformis DSM 19594 10868770 YP_004653842.1 CDS Runsl_0256 NC_015703.1 321698 322852 D PFAM: Iron-containing alcohol dehydrogenase; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: mbn:Mboo_0013 HxlR family transcriptional regulator; PFAM: Helix-turn-helix, HxlR type; SPTR: Transcriptional regulator, MarR family; alcohol dehydrogenase 321698..322852 Runella slithyformis DSM 19594 10868771 YP_004653843.1 CDS Runsl_0257 NC_015703.1 323116 323460 R PFAM: HxlR-like helix-turn-helix; COGs: COG1846 Transcriptional regulators; InterPro IPR000835; KEGG: bvu:BVU_0014 transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator; HxlR family transcriptional regulator complement(323116..323460) Runella slithyformis DSM 19594 10868772 YP_004653844.1 CDS Runsl_0258 NC_015703.1 323681 324115 D PFAM: MarR family; MarR family transcriptional regulator 323681..324115 Runella slithyformis DSM 19594 10868773 YP_004653845.1 CDS Runsl_0259 NC_015703.1 324185 324331 D Prodigal; manually curated; hypothetical protein 324185..324331 Runella slithyformis DSM 19594 10868774 YP_004653846.1 CDS Runsl_0261 NC_015703.1 324694 325401 D PFAM: Pirin; COGs: COG0693 intracellular protease/amidase; InterPro IPR002818; KEGG: ana:alr8073 hypothetical protein; PFAM: ThiJ/PfpI; SPTR: ThiJ/PfpI family protein; pirin 324694..325401 Runella slithyformis DSM 19594 10868776 YP_004653847.1 CDS Runsl_0262 NC_015703.1 325560 326318 D PFAM: DJ-1/PfpI family; KEGG: mtt:Ftrac_3234 hypothetical protein; SPTR: uncharacterized protein; ThiJ/PfpI domain-containing protein 325560..326318 Runella slithyformis DSM 19594 10868777 YP_004653848.1 CDS Runsl_0263 NC_015703.1 326427 326804 R COGs: COG3324 protein related to lactoylglutathione lyase; KEGG: acp:A2cp1_4043 glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; hypothetical protein complement(326427..326804) Runella slithyformis DSM 19594 10868778 YP_004653849.1 CDS Runsl_0264 NC_015703.1 327081 327455 D KEGG: dfe:Dfer_0266 hypothetical protein; SPTR: uncharacterized protein; glyoxalase/bleomycin resistance protein/dioxygenase 327081..327455 Runella slithyformis DSM 19594 10868779 YP_004653850.1 CDS Runsl_0265 NC_015703.1 327494 328228 D PFAM: Protein of unknown function, DUF481; COGs: COG3781 membrane protein; InterPro IPR007913; KEGG: chu:CHU_1817 hypothetical protein; SPTR: Conserved effector locus protein; hypothetical protein 327494..328228 Runella slithyformis DSM 19594 10868780 YP_004653851.1 CDS Runsl_0266 NC_015703.1 328235 329170 D PFAM: Bestrophin; COGs: COG3548 integral membrane protein; InterPro IPR010617; KEGG: psn:Pedsa_2090 protein of unknown function DUF1211; PFAM: Protein of unknown function DUF1211; SPTR: uncharacterized protein; hypothetical protein 328235..329170 Runella slithyformis DSM 19594 10868781 YP_004653852.1 CDS Runsl_0267 NC_015703.1 329172 329747 D PFAM: Protein of unknown function (DUF1211); COGs: COG2085 dinucleotide-binding protein; InterPro IPR004455; KEGG: sus:Acid_3142 NADP oxidoreductase, coenzyme F420-dependent; PFAM: NADP oxidoreductase, coenzyme F420-dependent; SPTR: NADP oxidoreductase coenzyme f420-dependent superfamily; hypothetical protein 329172..329747 Runella slithyformis DSM 19594 10868782 YP_004653853.1 CDS Runsl_0268 NC_015703.1 329776 330390 D PFAM: NADP oxidoreductase coenzyme F420-dependent; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: sli:Slin_5025 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; coenzyme F420-dependent NADP oxidoreductase 329776..330390 Runella slithyformis DSM 19594 10868783 YP_004653854.1 CDS Runsl_0269 NC_015703.1 330394 333507 R PFAM: Cyclic nucleotide-binding domain; COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR003661:IPR003594; KEGG: dfe:Dfer_1112 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase; Crp/Fnr family transcriptional regulator complement(330394..333507) Runella slithyformis DSM 19594 10868784 YP_004653855.1 CDS Runsl_0270 NC_015703.1 333616 334995 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR019734:IPR003661:IPR003594:IPR001440; KEGG: sli:Slin_3715 histidine kinase; PFAM: ATP-binding region, ATPase-like; Tetratricopeptide TPR-1; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Tetratricopeptide repeat; SPTR: Histidine kinase; integral membrane sensor signal transduction histidine kinase 333616..334995 Runella slithyformis DSM 19594 10868785 YP_004653856.1 CDS Runsl_0271 NC_015703.1 335011 337035 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR003661:IPR003594; KEGG: sli:Slin_2864 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase; ATP-binding protein 335011..337035 Runella slithyformis DSM 19594 10868786 YP_004653857.1 CDS Runsl_0272 NC_015703.1 337162 339342 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR003661:IPR003594; KEGG: sli:Slin_2864 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase; integral membrane sensor signal transduction histidine kinase 337162..339342 Runella slithyformis DSM 19594 10868787 YP_004653858.1 CDS Runsl_0273 NC_015703.1 339370 341595 D PFAM: 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; KEGG: gfo:GFO_3525 hypothetical protein; SPTR: uncharacterized protein; integral membrane sensor signal transduction histidine kinase 339370..341595 Runella slithyformis DSM 19594 10868788 YP_004653859.1 CDS Runsl_0274 NC_015703.1 341656 342720 D Prodigal; This gene is disrupted by complex chromosomal rearrangement; manually curated; hypothetical protein 341656..342720 Runella slithyformis DSM 19594 10868789 YP_004653860.1 CDS Runsl_0276 NC_015703.1 343330 343491 R COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR001375; KEGG: sli:Slin_5023 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein; hypothetical protein complement(343330..343491) Runella slithyformis DSM 19594 10868790 YP_004653861.1 CDS Runsl_0277 NC_015703.1 343549 344583 D PFAM: Prolyl oligopeptidase; COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR000524:IPR004839; KEGG: dfe:Dfer_1191 transcriptional regulator, GntR family with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/II; SMART: HTH transcriptional regulator, GntR; SPTR: Transcriptional regulator, GntR family with aminotransferase domain; peptidase S9 prolyl oligopeptidase active site domain-containing protein 343549..344583 Runella slithyformis DSM 19594 10868791 YP_004653862.1 CDS Runsl_0278 NC_015703.1 345629 347095 R PFAM: Aminotransferase class I and II; Bacterial regulatory proteins, gntR family; COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR010168:IPR002933:IPR011650; KEGG: rbi:RB2501_12622 hypothetical protein; PFAM: Peptidase M20, dimerisation; Peptidase M20; SPTR: uncharacterized protein; TIGRFAM: Peptidase M20D, amidohydrolase; GntR family transcriptional regulator complement(345629..347095) Runella slithyformis DSM 19594 10868792 YP_004653863.1 CDS Runsl_0279 NC_015703.1 347279 348712 R PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase; COGs: COG3467 flavin-nucleotide-binding protein; KEGG: dfe:Dfer_1192 hypothetical protein; SPTR: uncharacterized protein; amidohydrolase complement(347279..348712) Runella slithyformis DSM 19594 10868793 YP_004653864.1 CDS Runsl_0280 NC_015703.1 348825 349460 D KEGG: dfe:Dfer_0026 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 348825..349460 Runella slithyformis DSM 19594 10868794 YP_004653865.1 CDS Runsl_0281 NC_015703.1 349423 350040 D InterPro IPR013096; KEGG: bcj:BCAM0980 hypothetical protein; PFAM: Cupin 2, conserved barrel; SPTR: uncharacterized protein; hypothetical protein 349423..350040 Runella slithyformis DSM 19594 10868795 YP_004653866.1 CDS Runsl_0282 NC_015703.1 350058 350384 D PFAM: Cupin domain; COGs: COG0325 enzyme with a TIM-barrel fold; InterPro IPR011078:IPR001608; KEGG: dfe:Dfer_2011 alanine racemase domain protein; PFAM: Alanine racemase, N-terminal; SPTR: Alanine racemase domain protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; cupin 350058..350384 Runella slithyformis DSM 19594 10868796 YP_004653867.1 CDS Runsl_0283 NC_015703.1 350441 351178 R PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family; COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692; KEGG: npu:Npun_R3418 peptidase S45, penicillin amidase; PFAM: Peptidase S45, penicillin amidase; PRIAM: Glutaryl-7-aminocephalosporanic-acid acylase; SPTR: Penicillin amidase superfamily; hypothetical protein complement(350441..351178) Runella slithyformis DSM 19594 10868797 YP_004653868.1 CDS Runsl_0284 NC_015703.1 351355 353472 D PFAM: Penicillin amidase; glutaryl-7-aminocephalosporanic-acid acylase 351355..353472 Runella slithyformis DSM 19594 10868798 YP_004653869.1 CDS Runsl_0285 NC_015703.1 353560 353841 D KEGG: dfe:Dfer_2225 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 353560..353841 Runella slithyformis DSM 19594 10868799 YP_004653870.1 CDS Runsl_0286 NC_015703.1 353877 355046 D PFAM: Beta-propeller repeat; InterPro IPR001087; KEGG: sli:Slin_4778 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family; hypothetical protein 353877..355046 Runella slithyformis DSM 19594 10868800 YP_004653871.1 CDS Runsl_0287 NC_015703.1 355459 356688 D PFAM: GDSL-like Lipase/Acylhydrolase; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR013428:IPR013427; KEGG: sli:Slin_4779 dehydrogenase; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; haem-binding region; G-D-S-L family lipolytic protein 355459..356688 Runella slithyformis DSM 19594 10868801 YP_004653872.1 CDS Runsl_0288 NC_015703.1 356712 360176 D PFAM: Cytochrome c; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: fjo:Fjoh_4841 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; membrane-bound dehydrogenase domain-containing protein 356712..360176 Runella slithyformis DSM 19594 10868802 YP_004653873.1 CDS Runsl_0289 NC_015703.1 360259 360723 R PFAM: Response regulator receiver domain; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1620 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; response regulator receiver protein complement(360259..360723) Runella slithyformis DSM 19594 10868803 YP_004653874.1 CDS Runsl_0290 NC_015703.1 361602 364637 D PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_1619 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 361602..364637 Runella slithyformis DSM 19594 10868804 YP_004653875.1 CDS Runsl_0291 NC_015703.1 364695 366068 D PFAM: SusD family; KEGG: sli:Slin_2732 hypothetical protein; SPTR: uncharacterized protein; RagB/SusD domain-containing protein 364695..366068 Runella slithyformis DSM 19594 10868805 YP_004653876.1 CDS Runsl_0292 NC_015703.1 366114 367457 D KEGG: sli:Slin_2733 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 366114..367457 Runella slithyformis DSM 19594 10868806 YP_004653877.1 CDS Runsl_0293 NC_015703.1 367485 369173 D hypothetical protein 367485..369173 Runella slithyformis DSM 19594 10868807 YP_004653878.1 CDS Runsl_0294 NC_015703.1 369278 369412 D InterPro IPR003088; KEGG: sli:Slin_2734 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I; hypothetical protein 369278..369412 Runella slithyformis DSM 19594 10868808 YP_004653879.1 CDS Runsl_0295 NC_015703.1 369488 370105 D PFAM: Cytochrome c; COGs: COG2041 Sulfite oxidase; InterPro IPR006311:IPR000572:IPR005066; KEGG: sli:Slin_2735 oxidoreductase molybdopterin binding protein; PFAM: Oxidoreductase, molybdopterin binding; Moybdenum cofactor oxidoreductase, dimerisation; PRIAM: Nitrate reductase (NADH); SPTR: Oxidoreductase molybdopterin binding protein; cytochrome c class I 369488..370105 Runella slithyformis DSM 19594 10868809 YP_004653880.1 CDS Runsl_0296 NC_015703.1 370102 371337 D PFAM: Mo-co oxidoreductase dimerisation domain; Oxidoreductase molybdopterin binding domain; InterPro IPR008775; KEGG: sli:Slin_2447 phytanoyl-CoA dioxygenase; PFAM: Phytanoyl-CoA dioxygenase; SPTR: Phytanoyl-CoA dioxygenase; nitrate reductase (NADH) 370102..371337 Runella slithyformis DSM 19594 10868810 YP_004653881.1 CDS Runsl_0297 NC_015703.1 371530 372342 D PFAM: Phytanoyl-CoA dioxygenase (PhyH); COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: sli:Slin_2448 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; phytanoyl-CoA dioxygenase 371530..372342 Runella slithyformis DSM 19594 10868811 YP_004653882.1 CDS Runsl_0298 NC_015703.1 372359 373162 D PFAM: short chain dehydrogenase; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1518 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; short-chain dehydrogenase/reductase SDR 372359..373162 Runella slithyformis DSM 19594 10868812 YP_004653883.1 CDS Runsl_0299 NC_015703.1 373388 375955 R PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; KEGG: fjo:Fjoh_4619 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor complement(373388..375955) Runella slithyformis DSM 19594 10868813 YP_004653884.1 CDS Runsl_0300 NC_015703.1 376303 376758 D PFAM: Domain of unknown function (DUF3291); COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR006055:IPR013520:IPR001357; KEGG: cle:Clole_0717 exonuclease RNase T and DNA polymerase III; PFAM: Exonuclease, RNase T/DNA polymerase III; BRCT; SMART: Exonuclease; SPTR: Exonuclease RNase T and DNA polymerase III; hypothetical protein 376303..376758 Runella slithyformis DSM 19594 10868814 YP_004653885.1 CDS Runsl_0301 NC_015703.1 376968 377867 R PFAM: Exonuclease; BRCA1 C Terminus (BRCT) domain; InterPro IPR007829; KEGG: cni:Calni_1848 hypothetical protein; SPTR: Predicted protein; Exonuclease RNase T and DNA polymerase III complement(376968..377867) Runella slithyformis DSM 19594 10868815 YP_004653886.1 CDS Runsl_0302 NC_015703.1 377892 378209 R PFAM: TM2 domain; hypothetical protein complement(377892..378209) Runella slithyformis DSM 19594 10868816 YP_004653887.1 CDS Runsl_0303 NC_015703.1 378499 378732 R KEGG: dfe:Dfer_1189 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(378499..378732) Runella slithyformis DSM 19594 10868817 YP_004653888.1 CDS Runsl_0304 NC_015703.1 378962 379240 D hypothetical protein 378962..379240 Runella slithyformis DSM 19594 10868818 YP_004653889.1 CDS Runsl_0305 NC_015703.1 379237 379566 D hypothetical protein 379237..379566 Runella slithyformis DSM 19594 10868819 YP_004653890.1 CDS Runsl_0306 NC_015703.1 379597 379722 D hypothetical protein 379597..379722 Runella slithyformis DSM 19594 10868820 YP_004653891.1 CDS Runsl_0307 NC_015703.1 379750 380064 D hypothetical protein 379750..380064 Runella slithyformis DSM 19594 10868821 YP_004653892.1 CDS Runsl_0308 NC_015703.1 380055 380519 D hypothetical protein 380055..380519 Runella slithyformis DSM 19594 10868822 YP_004653893.1 CDS Runsl_0309 NC_015703.1 380516 380791 D hypothetical protein 380516..380791 Runella slithyformis DSM 19594 10868823 YP_004653894.1 CDS Runsl_0310 NC_015703.1 380788 381012 D hypothetical protein 380788..381012 Runella slithyformis DSM 19594 10868824 YP_004653895.1 CDS Runsl_0311 NC_015703.1 381356 381823 D SPTR: uncharacterized protein; hypothetical protein 381356..381823 Runella slithyformis DSM 19594 10868826 YP_004653896.1 CDS Runsl_0312 NC_015703.1 381801 383306 D hypothetical protein 381801..383306 Runella slithyformis DSM 19594 10868827 YP_004653897.1 CDS Runsl_0313 NC_015703.1 383344 383736 D hypothetical protein 383344..383736 Runella slithyformis DSM 19594 10868828 YP_004653898.1 CDS Runsl_0314 NC_015703.1 383733 384065 D hypothetical protein 383733..384065 Runella slithyformis DSM 19594 10868829 YP_004653899.1 CDS Runsl_0315 NC_015703.1 384094 384276 D hypothetical protein 384094..384276 Runella slithyformis DSM 19594 10868830 YP_004653900.1 CDS Runsl_0316 NC_015703.1 384363 384851 D hypothetical protein 384363..384851 Runella slithyformis DSM 19594 10868831 YP_004653901.1 CDS Runsl_0317 NC_015703.1 384971 385534 D hypothetical protein 384971..385534 Runella slithyformis DSM 19594 10868832 YP_004653902.1 CDS Runsl_0318 NC_015703.1 385538 385981 D SPTR: uncharacterized protein; hypothetical protein 385538..385981 Runella slithyformis DSM 19594 10868833 YP_004653903.1 CDS Runsl_0319 NC_015703.1 385990 387612 D COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR002142; KEGG: bra:BRADO3628 hypothetical protein; PFAM: Peptidase S49; SPTR: Signal peptide peptidase SppA, 36K type; hypothetical protein 385990..387612 Runella slithyformis DSM 19594 10868834 YP_004653904.1 CDS Runsl_0320 NC_015703.1 387720 388601 D PFAM: Peptidase S49; TIGRFAM: signal peptide peptidase SppA, 36K type; KEGG: bbo:BBOV_II002880 85 kDa protein; SPTR: Bv80/Bb-1; peptidase S49 387720..388601 Runella slithyformis DSM 19594 10868835 YP_004653905.1 CDS Runsl_0321 NC_015703.1 388612 389034 D hypothetical protein 388612..389034 Runella slithyformis DSM 19594 10868836 YP_004653906.1 CDS Runsl_0322 NC_015703.1 389064 390068 D hypothetical protein 389064..390068 Runella slithyformis DSM 19594 10868837 YP_004653907.1 CDS Runsl_0323 NC_015703.1 390181 390726 D hypothetical protein 390181..390726 Runella slithyformis DSM 19594 10868838 YP_004653908.1 CDS Runsl_0324 NC_015703.1 390969 391469 D hypothetical protein 390969..391469 Runella slithyformis DSM 19594 10868839 YP_004653909.1 CDS Runsl_0325 NC_015703.1 391656 391889 D hypothetical protein 391656..391889 Runella slithyformis DSM 19594 10868840 YP_004653910.1 CDS Runsl_0326 NC_015703.1 391916 392584 D hypothetical protein 391916..392584 Runella slithyformis DSM 19594 10868841 YP_004653911.1 CDS Runsl_0327 NC_015703.1 392584 392886 D KEGG: adn:Alide_3560 ParB domain protein nuclease; SPTR: ParB domain protein nuclease; hypothetical protein 392584..392886 Runella slithyformis DSM 19594 10868842 YP_004653912.1 CDS Runsl_0328 NC_015703.1 392911 393525 D KEGG: bvu:BVU_2841 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 392911..393525 Runella slithyformis DSM 19594 10868843 YP_004653913.1 CDS Runsl_0329 NC_015703.1 393516 394298 D KEGG: fjo:Fjoh_3588 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 393516..394298 Runella slithyformis DSM 19594 10868844 YP_004653914.1 CDS Runsl_0330 NC_015703.1 394310 394924 D hypothetical protein 394310..394924 Runella slithyformis DSM 19594 10868845 YP_004653915.1 CDS Runsl_0331 NC_015703.1 395083 395766 D InterPro IPR003356; KEGG: bvu:BVU_1577 type I restriction enzyme, M subunit; PFAM: DNA methylase, adenine-specific; SPTR: Type I restriction enzyme, M subunit; hypothetical protein 395083..395766 Runella slithyformis DSM 19594 10868846 YP_004653916.1 CDS Runsl_0332 NC_015703.1 395830 396636 D PFAM: N-6 DNA Methylase; N-6 DNA methylase 395830..396636 Runella slithyformis DSM 19594 10868847 YP_004653917.1 CDS Runsl_0333 NC_015703.1 396778 397026 D hypothetical protein 396778..397026 Runella slithyformis DSM 19594 10868848 YP_004653918.1 CDS Runsl_0334 NC_015703.1 397026 397298 D InterPro IPR014944; PFAM: Protein of unknown function DUF1813, HSP20-like; hypothetical protein 397026..397298 Runella slithyformis DSM 19594 10868849 YP_004653919.1 CDS Runsl_0335 NC_015703.1 397375 397548 D PFAM: HSP20-like domain of unknown function (DUF1813); COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; KEGG: efa:EF2258 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 397375..397548 Runella slithyformis DSM 19594 10868850 YP_004653920.1 CDS Runsl_0336 NC_015703.1 397541 398110 D PFAM: MgsA AAA+ ATPase C terminal; hypothetical protein 397541..398110 Runella slithyformis DSM 19594 10868851 YP_004653921.1 CDS Runsl_0337 NC_015703.1 398224 398493 D hypothetical protein 398224..398493 Runella slithyformis DSM 19594 10868852 YP_004653922.1 CDS Runsl_0338 NC_015703.1 398564 399091 D KEGG: osp:Odosp_2613 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 398564..399091 Runella slithyformis DSM 19594 10868853 YP_004653923.1 CDS Runsl_0339 NC_015703.1 399084 400697 D PFAM: Terminase-like family; hypothetical protein 399084..400697 Runella slithyformis DSM 19594 10868854 YP_004653924.1 CDS Runsl_0340 NC_015703.1 400811 401179 R KEGG: osp:Odosp_2618 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(400811..401179) Runella slithyformis DSM 19594 10868855 YP_004653925.1 CDS Runsl_0341 NC_015703.1 401188 402516 D hypothetical protein 401188..402516 Runella slithyformis DSM 19594 10868856 YP_004653926.1 CDS Runsl_0342 NC_015703.1 402513 402710 D KEGG: shg:Sph21_3470 hypothetical protein; hypothetical protein 402513..402710 Runella slithyformis DSM 19594 10868857 YP_004653927.1 CDS Runsl_0343 NC_015703.1 402707 403684 D hypothetical protein 402707..403684 Runella slithyformis DSM 19594 10868858 YP_004653928.1 CDS Runsl_0344 NC_015703.1 403695 404417 D hypothetical protein 403695..404417 Runella slithyformis DSM 19594 10868859 YP_004653929.1 CDS Runsl_0345 NC_015703.1 404378 404899 D hypothetical protein 404378..404899 Runella slithyformis DSM 19594 10868860 YP_004653930.1 CDS Runsl_0346 NC_015703.1 404896 405021 D hypothetical protein 404896..405021 Runella slithyformis DSM 19594 10868861 YP_004653931.1 CDS Runsl_0347 NC_015703.1 405018 405287 D hypothetical protein 405018..405287 Runella slithyformis DSM 19594 10868862 YP_004653932.1 CDS Runsl_0348 NC_015703.1 405284 405661 D hypothetical protein 405284..405661 Runella slithyformis DSM 19594 10868863 YP_004653933.1 CDS Runsl_0349 NC_015703.1 405684 405977 D hypothetical protein 405684..405977 Runella slithyformis DSM 19594 10868864 YP_004653934.1 CDS Runsl_0350 NC_015703.1 405971 406774 D KEGG: mel:Metbo_1109 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 405971..406774 Runella slithyformis DSM 19594 10868865 YP_004653935.1 CDS Runsl_0351 NC_015703.1 406793 408205 R hypothetical protein complement(406793..408205) Runella slithyformis DSM 19594 10868866 YP_004653936.1 CDS Runsl_0352 NC_015703.1 408299 408760 D hypothetical protein 408299..408760 Runella slithyformis DSM 19594 10868867 YP_004653937.1 CDS Runsl_0353 NC_015703.1 408744 410744 D hypothetical protein 408744..410744 Runella slithyformis DSM 19594 10868868 YP_004653938.1 CDS Runsl_0354 NC_015703.1 410741 411268 D KEGG: wvi:Weevi_0252 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 410741..411268 Runella slithyformis DSM 19594 10868869 YP_004653939.1 CDS Runsl_0355 NC_015703.1 411368 415192 D hypothetical protein 411368..415192 Runella slithyformis DSM 19594 10868870 YP_004653940.1 CDS Runsl_0356 NC_015703.1 415195 416610 D hypothetical protein 415195..416610 Runella slithyformis DSM 19594 10868871 YP_004653941.1 CDS Runsl_0357 NC_015703.1 416681 417151 D hypothetical protein 416681..417151 Runella slithyformis DSM 19594 10868872 YP_004653942.1 CDS Runsl_0358 NC_015703.1 417783 417914 D hypothetical protein 417783..417914 Runella slithyformis DSM 19594 10868873 YP_004653943.1 CDS Runsl_0359 NC_015703.1 418468 418698 R InterPro IPR002104; KEGG: sli:Slin_6168 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Integrase; hypothetical protein complement(418468..418698) Runella slithyformis DSM 19594 10868874 YP_004653944.1 CDS Runsl_0360 NC_015703.1 418732 419937 R PFAM: Phage integrase; integrase complement(418732..419937) Runella slithyformis DSM 19594 10868875 YP_004653945.1 CDS Runsl_0361 NC_015703.1 420335 421999 D PFAM: Amidase; KEGG: cpi:Cpin_0774 hypothetical protein; SPTR: uncharacterized protein; amidase 420335..421999 Runella slithyformis DSM 19594 10868877 YP_004653946.1 CDS Runsl_0362 NC_015703.1 422049 422828 R PFAM: Protein of unknown function (DUF3050); InterPro IPR007492; KEGG: phe:Phep_1585 LytTr DNA-binding subunit; PFAM: LytTr DNA-binding region; SPTR: Response regulator; hypothetical protein complement(422049..422828) Runella slithyformis DSM 19594 10868878 YP_004653947.1 CDS Runsl_0363 NC_015703.1 422940 423329 R PFAM: LytTr DNA-binding domain; InterPro IPR000834; KEGG: sli:Slin_0971 hypothetical protein; PFAM: Peptidase M14, carboxypeptidase A; SPTR: uncharacterized protein; LytTr DNA-binding protein complement(422940..423329) Runella slithyformis DSM 19594 10868879 YP_004653948.1 CDS Runsl_0364 NC_015703.1 424118 426883 R PFAM: Zinc carboxypeptidase; peptidase M14 carboxypeptidase A complement(424118..426883) Runella slithyformis DSM 19594 10868880 YP_004653949.1 CDS Runsl_0365 NC_015703.1 427136 427405 D SPTR: uncharacterized protein; hypothetical protein 427136..427405 Runella slithyformis DSM 19594 10868881 YP_004653950.1 CDS Runsl_0366 NC_015703.1 427426 428304 R COGs: COG1373 ATPase (AAA+ superfamily); KEGG: mtt:Ftrac_2734 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(427426..428304) Runella slithyformis DSM 19594 10868882 YP_004653951.1 CDS Runsl_0367 NC_015703.1 428530 429894 R hypothetical protein complement(428530..429894) Runella slithyformis DSM 19594 10868883 YP_004653952.1 CDS Runsl_0368 NC_015703.1 429971 430171 D InterPro IPR000834; KEGG: sli:Slin_3266 hypothetical protein; PFAM: Peptidase M14, carboxypeptidase A; SPTR: uncharacterized protein; hypothetical protein 429971..430171 Runella slithyformis DSM 19594 10868884 YP_004653953.1 CDS Runsl_0369 NC_015703.1 430328 433114 R PFAM: Zinc carboxypeptidase; COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151:IPR011659; KEGG: sli:Slin_5713 peptidase S41; PFAM: Peptidase S41; WD40-like Beta Propeller; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: Tricorn-like protease; peptidase M14 carboxypeptidase A complement(430328..433114) Runella slithyformis DSM 19594 10868885 YP_004653954.1 CDS Runsl_0370 NC_015703.1 433368 436553 D PFAM: WD40-like Beta Propeller Repeat; Peptidase S41; KEGG: dfe:Dfer_2989 hypothetical protein; SPTR: uncharacterized protein; peptidase S41 433368..436553 Runella slithyformis DSM 19594 10868886 YP_004653955.1 CDS Runsl_0371 NC_015703.1 436718 437230 D KEGG: sli:Slin_5579 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 436718..437230 Runella slithyformis DSM 19594 10868887 YP_004653956.1 CDS Runsl_0372 NC_015703.1 437281 438105 R COGs: COG0274 Deoxyribose-phosphate aldolase; HAMAP: Deoxyribose-phosphate aldolase; InterPro IPR011343:IPR002915; KEGG: afv:AFLA_123760 deoxyribose-phosphate aldolase; PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PRIAM: Deoxyribose-phosphate aldolase; SPTR: Predicted protein; TIGRFAM: Deoxyribose-phosphate aldolase; hypothetical protein complement(437281..438105) Runella slithyformis DSM 19594 10868888 YP_004653957.1 CDS Runsl_0373 NC_015703.1 438211 438969 R PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase; InterPro IPR019734:IPR001440; KEGG: sli:Slin_0369 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; deoxyribose-phosphate aldolase complement(438211..438969) Runella slithyformis DSM 19594 10868889 YP_004653958.1 CDS Runsl_0374 NC_015703.1 439020 440351 R PFAM: Tetratricopeptide repeat; KEGG: sli:Slin_3278 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(439020..440351) Runella slithyformis DSM 19594 10868890 YP_004653959.1 CDS Runsl_0375 NC_015703.1 440535 441566 R COGs: COG1577 Mevalonate kinase; InterPro IPR006204:IPR013750; KEGG: sli:Slin_4183 GHMP kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal; SPTR: GHMP kinase; hypothetical protein complement(440535..441566) Runella slithyformis DSM 19594 10868891 YP_004653960.1 CDS Runsl_0376 NC_015703.1 441649 442641 R PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; InterPro IPR006260:IPR008756:IPR003538:IPR012910; KEGG: sli:Slin_6188 TonB family protein; PFAM: Gram-negative bacterial tonB protein; Peptidase M56, BlaR1; TonB-dependent receptor, plug; SPTR: TonB family protein; TIGRFAM: TonB, C-terminal; GHMP kinase complement(441649..442641) Runella slithyformis DSM 19594 10868892 YP_004653961.1 CDS Runsl_0377 NC_015703.1 442745 445060 R PFAM: BlaR1 peptidase M56; TonB-dependent Receptor Plug Domain; Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: sli:Slin_6189 CopY family transcriptional regulator; PFAM: Penicillinase repressor; SPTR: Transcriptional repressor, CopY family; TonB family protein complement(442745..445060) Runella slithyformis DSM 19594 10868893 YP_004653962.1 CDS Runsl_0378 NC_015703.1 445104 445460 R PFAM: Penicillinase repressor; COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006056:IPR006175; KEGG: thx:Thet_1042 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP; TIGRFAM: YjgF-like protein; CopY family transcriptional repressor complement(445104..445460) Runella slithyformis DSM 19594 10868894 YP_004653963.1 CDS Runsl_0379 NC_015703.1 445733 446182 R PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, COGs: COG3255 sterol carrier protein; InterPro IPR003033; KEGG: dfe:Dfer_4726 sterol-binding domain protein; PFAM: Sterol-binding; SPTR: Sterol-binding domain protein; endoribonuclease L-PSP complement(445733..446182) Runella slithyformis DSM 19594 10868895 YP_004653964.1 CDS Runsl_0380 NC_015703.1 446274 446573 D PFAM: SCP-2 sterol transfer family; KEGG: dfe:Dfer_3257 hypothetical protein; SPTR: uncharacterized protein; Sterol-binding domain-containing protein 446274..446573 Runella slithyformis DSM 19594 10868896 YP_004653965.1 CDS Runsl_0381 NC_015703.1 446650 446829 R PFAM: Histone H1-like protein Hc1; KEGG: sli:Slin_1746 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(446650..446829) Runella slithyformis DSM 19594 10868897 YP_004653966.1 CDS Runsl_0382 NC_015703.1 447096 447659 R COGs: COG2315 conserved hypothetical protein; InterPro IPR007351; KEGG: chu:CHU_2412 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(447096..447659) Runella slithyformis DSM 19594 10868898 YP_004653967.1 CDS Runsl_0383 NC_015703.1 447697 448047 R PFAM: Protein of unknown function (DUF419); KEGG: dfe:Dfer_0460 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(447697..448047) Runella slithyformis DSM 19594 10868899 YP_004653968.1 CDS Runsl_0384 NC_015703.1 448083 448382 R COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; InterPro IPR004588; KEGG: sli:Slin_1366 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; SPTR: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; hypothetical protein complement(448083..448382) Runella slithyformis DSM 19594 10868900 YP_004653969.1 CDS Runsl_0385 NC_015703.1 448348 450351 R PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; COGs: COG1169 Isochorismate synthase; InterPro IPR015890; KEGG: sli:Slin_0770 chorismate binding-like protein; PFAM: Chorismate binding, C-terminal; SPTR: Chorismate binding-like protein; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(448348..450351) Runella slithyformis DSM 19594 10868901 YP_004653970.1 CDS Runsl_0386 NC_015703.1 450439 451671 R PFAM: chorismate binding enzyme; TIGRFAM: isochorismate synthases; KEGG: phe:Phep_2153 hypothetical protein; SPTR: uncharacterized protein; manually curated; chorismate-binding protein complement(450439..451671) Runella slithyformis DSM 19594 10868902 YP_004653971.1 CDS Runsl_0387 NC_015703.1 452150 452695 D COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: sli:Slin_1096 fatty acid hydroxylase; PFAM: Fatty acid hydroxylase; SPTR: sterol desaturase-related protein; hypothetical protein 452150..452695 Runella slithyformis DSM 19594 10868903 YP_004653972.1 CDS Runsl_0388 NC_015703.1 452754 453578 D PFAM: Fatty acid hydroxylase superfamily; COGs: COG0192 S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthase; InterPro IPR002133; KEGG: lby:Lbys_1573 methionine adenosyltransferase; PFAM: S-adenosylmethionine synthetase; PRIAM: Methionine adenosyltransferase; SPTR: S-adenosylmethionine synthase; TIGRFAM: S-adenosylmethionine synthetase; fatty acid hydroxylase 452754..453578 Runella slithyformis DSM 19594 10868904 YP_004653973.1 CDS Runsl_0389 NC_015703.1 453727 455016 R PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, N-terminal domain; S-adenosylmethionine synthetase, central domain; TIGRFAM: S-adenosylmethionine synthetase; COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR004652:IPR001269; KEGG: sli:Slin_2392 hypothetical protein; PFAM: tRNA-dihydrouridine synthase; SPTR: tRNA-dihydrouridine synthase; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; S-adenosylmethionine synthase complement(453727..455016) Runella slithyformis DSM 19594 10868905 YP_004653974.1 CDS Runsl_0390 NC_015703.1 455288 456277 D PFAM: Dihydrouridine synthase (Dus); TIGRFAM: TIM-barrel protein, nifR3 family; KEGG: sli:Slin_5357 hypothetical protein; SPTR: uncharacterized protein; nitrogen regulator protein NIfR3 455288..456277 Runella slithyformis DSM 19594 10868906 YP_004653975.1 CDS Runsl_0391 NC_015703.1 456333 456818 D KEGG: lby:Lbys_3070 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 456333..456818 Runella slithyformis DSM 19594 10868907 YP_004653976.1 CDS Runsl_0392 NC_015703.1 456822 457925 R PFAM: Protein of unknown function (DUF2891); KEGG: zpr:ZPR_1895 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(456822..457925) Runella slithyformis DSM 19594 10868908 YP_004653977.1 CDS Runsl_0393 NC_015703.1 458448 459143 D KEGG: sli:Slin_6414 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 458448..459143 Runella slithyformis DSM 19594 10868909 YP_004653978.1 CDS Runsl_0394 NC_015703.1 459177 460835 D PFAM: Uncharacterised protein family UPF0560; hypothetical protein 459177..460835 Runella slithyformis DSM 19594 10868910 YP_004653979.1 CDS Runsl_0395 NC_015703.1 460785 460913 R KEGG: dfe:Dfer_3783 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(460785..460913) Runella slithyformis DSM 19594 10868911 YP_004653980.1 CDS Runsl_0396 NC_015703.1 461956 463686 D COGs: COG2942 N-acyl-D-glucosamine 2-epimerase; InterPro IPR010819; KEGG: bth:BT_0453 N-acylglucosamine 2-epimerase; PFAM: N-acylglucosamine 2-epimerase; SPTR: N-acylglucosamine 2-epimerase; hypothetical protein 461956..463686 Runella slithyformis DSM 19594 10868912 YP_004653981.1 CDS Runsl_0397 NC_015703.1 463672 464841 R PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); Prodigal; This gene is disrupted by insertion of repetitive element; manually curated; N-acylglucosamine 2-epimerase complement(463672..464841) Runella slithyformis DSM 19594 10868913 YP_004653982.1 CDS Runsl_0400 NC_015703.1 469446 470396 R PFAM: Prolyl oligopeptidase; COGs: COG2195 Di- and tripeptidase; InterPro IPR002933:IPR011650; KEGG: sli:Slin_3913 peptidase M20; PFAM: Peptidase M20; Peptidase M20, dimerisation; SPTR: Peptidase M20; dipeptidylaminopeptidase/acylaminoacyl- peptidase -like protein complement(469446..470396) Runella slithyformis DSM 19594 10868916 YP_004653983.1 CDS Runsl_0401 NC_015703.1 470493 471818 R PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; COGs: COG3342 conserved hypothetical protein; InterPro IPR010430; KEGG: gfo:GFO_3451 secreted protein containing DUF1028; PFAM: Protein of unknown function DUF1028; SPTR: Secreted protein containing DUF1028; peptidase M20 complement(470493..471818) Runella slithyformis DSM 19594 10868917 YP_004653984.1 CDS Runsl_0402 NC_015703.1 471983 472972 R PFAM: Family of unknown function (DUF1028); COGs: COG5010 Flp pilus assembly protein TadD contains TPR repeats; InterProIPR019734:IPR003107:IPR011600:IPR001440:IPR 013105; KEGG: cyp:PCC8801_1300 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR2; Peptidase C14, caspase catalytic; Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; hypothetical protein complement(471983..472972) Runella slithyformis DSM 19594 10868918 YP_004653985.1 CDS Runsl_0403 NC_015703.1 473376 476267 D PFAM: Caspase domain; Tetratricopeptide repeat; KEGG: dfe:Dfer_0575 peptidase C14 caspase catalytic subunit P20; SPTR: uncharacterized protein; hypothetical protein 473376..476267 Runella slithyformis DSM 19594 10868919 YP_004653986.1 CDS Runsl_0404 NC_015703.1 476275 477099 D InterPro IPR000668; KEGG: sli:Slin_6485 peptidase C1A papain; PFAM: Peptidase C1A, papain C-terminal; SMART: Peptidase C1A, papain C-terminal; SPTR: Cysteine protease; hypothetical protein 476275..477099 Runella slithyformis DSM 19594 10868920 YP_004653987.1 CDS Runsl_0405 NC_015703.1 477112 478572 D PFAM: Papain family cysteine protease; peptidase C1A papain 477112..478572 Runella slithyformis DSM 19594 10868921 YP_004653988.1 CDS Runsl_0406 NC_015703.1 478598 478777 R COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR019734:IPR003661:IPR003594:IPR001440; KEGG: sli:Slin_3715 histidine kinase; PFAM: ATP-binding region, ATPase-like; Tetratricopeptide TPR-1; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Tetratricopeptide repeat; SPTR: Histidine kinase; hypothetical protein complement(478598..478777) Runella slithyformis DSM 19594 10868922 YP_004653989.1 CDS Runsl_0407 NC_015703.1 478833 480923 R PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Tetratricopeptide repeat; COGs: COG0527 Aspartokinase; InterProIPR001341:IPR001048:IPR002912:IPR005106:IPR 001342; KEGG: dfe:Dfer_3152 bifunctional aspartokinase I/homeserine dehydrogenase I; PFAM: Homoserine dehydrogenase, catalytic; Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT; Aspartate/homoserine dehydrogenase, NAD-binding; PRIAM: Aspartate kinase., Homoserine dehydrogenase; SPTR: Aspartate kinase; TIGRFAM: Aspartate kinase region; multi-sensor signal transduction histidine kinase complement(478833..480923) Runella slithyformis DSM 19594 10868923 YP_004653990.1 CDS Runsl_0408 NC_015703.1 481066 483528 R PFAM: Homoserine dehydrogenase; Homoserine dehydrogenase, NAD binding domain; Amino acid kinase; ACT domain; TIGRFAM: aspartate kinase, monofunctional class; aspartate kinase; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076; KEGG: dfe:Dfer_4714 glucose-methanol-choline oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; aspartate kinase complement(481066..483528) Runella slithyformis DSM 19594 10868924 YP_004653991.1 CDS Runsl_0409 NC_015703.1 483939 485660 R PFAM: GMC oxidoreductase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: sli:Slin_5717 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; FAD dependent oxidoreductase complement(483939..485660) Runella slithyformis DSM 19594 10868925 YP_004653992.1 CDS Runsl_0410 NC_015703.1 485761 486687 R PFAM: NAD dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(485761..486687) Runella slithyformis DSM 19594 10868926 YP_004653993.1 CDS Runsl_0411 NC_015703.1 486748 486939 D InterPro IPR010496; KEGG: fbc:FB2170_11601 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; hypothetical protein 486748..486939 Runella slithyformis DSM 19594 10868927 YP_004653994.1 CDS Runsl_0412 NC_015703.1 486958 487644 D PFAM: Domain of Unknown Function (DUF1080); InterPro IPR011483; KEGG: dfe:Dfer_2125 protein of unknown function DUF1593; PFAM: Protein of unknown function DUF1593; SPTR: uncharacterized protein; hypothetical protein 486958..487644 Runella slithyformis DSM 19594 10868928 YP_004653995.1 CDS Runsl_0413 NC_015703.1 487752 489164 R PFAM: Protein of unknown function (DUF1593); COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076; KEGG: dfe:Dfer_4714 glucose-methanol-choline oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; hypothetical protein complement(487752..489164) Runella slithyformis DSM 19594 10868929 YP_004653996.1 CDS Runsl_0414 NC_015703.1 489322 491040 R PFAM: GMC oxidoreductase; KEGG: sli:Slin_1890 hypothetical protein; SPTR: uncharacterized protein; FAD dependent oxidoreductase complement(489322..491040) Runella slithyformis DSM 19594 10868930 YP_004653997.1 CDS Runsl_0415 NC_015703.1 491094 491645 R COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: sli:Slin_1481 LacI family transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; hypothetical protein complement(491094..491645) Runella slithyformis DSM 19594 10868931 YP_004653998.1 CDS Runsl_0416 NC_015703.1 491751 492788 R PFAM: Bacterial regulatory proteins, lacI family; family; InterPro IPR010905; KEGG: sli:Slin_1019 glycosyl hydrolase 88; PFAM: Glycosyl hydrolase, family 88; SPTR: Glycosyl hydrolase 88; LacI family transcriptional regulator complement(491751..492788) Runella slithyformis DSM 19594 10868932 YP_004653999.1 CDS Runsl_0417 NC_015703.1 493165 494331 D PFAM: Glycosyl Hydrolase 88; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_1567 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; glycoside hydrolase 493165..494331 Runella slithyformis DSM 19594 10868933 YP_004654000.1 CDS Runsl_0418 NC_015703.1 494400 495014 D PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: dfe:Dfer_4707 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; ECF subfamily RNA polymerase sigma-24 subunit 494400..495014 Runella slithyformis DSM 19594 10868934 YP_004654001.1 CDS Runsl_0419 NC_015703.1 495107 496198 D PFAM: FecR protein; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR011662:IPR012910:IPR000531; KEGG: sli:Slin_2454 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; anti-FecI sigma factor FecR 495107..496198 Runella slithyformis DSM 19594 10868935 YP_004654002.1 CDS Runsl_0420 NC_015703.1 496320 499727 D PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: sli:Slin_2453 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 496320..499727 Runella slithyformis DSM 19594 10868936 YP_004654003.1 CDS Runsl_0421 NC_015703.1 499761 501374 D PFAM: SusD family; RagB/SusD domain-containing protein 499761..501374 Runella slithyformis DSM 19594 10868937 YP_004654004.1 CDS Runsl_0422 NC_015703.1 501457 501900 R InterPro IPR010496; KEGG: fbc:FB2170_06090 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; hypothetical protein complement(501457..501900) Runella slithyformis DSM 19594 10868938 YP_004654005.1 CDS Runsl_0423 NC_015703.1 502052 502951 D PFAM: Domain of Unknown Function (DUF1080); KEGG: bcv:Bcav_3390 coagulation factor 5/8 type domain protein; SPTR: uncharacterized protein; hypothetical protein 502052..502951 Runella slithyformis DSM 19594 10868939 YP_004654006.1 CDS Runsl_0424 NC_015703.1 502920 504785 D PFAM: Heparinase II/III-like protein; COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR001078; KEGG: lby:Lbys_3077 catalytic domaiN-containing protein of components of various dehydrogenase complexes; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; SPTR: Catalytic domain-containing protein of components of various dehydrogenase complexes; coagulation factor 5/8 type domain-containing protein 502920..504785 Runella slithyformis DSM 19594 10868940 YP_004654007.1 CDS Runsl_0425 NC_015703.1 504792 505601 D PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); hypothetical protein 504792..505601 Runella slithyformis DSM 19594 10868941 YP_004654008.1 CDS Runsl_0426 NC_015703.1 505839 506036 R InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1683 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein complement(505839..506036) Runella slithyformis DSM 19594 10868942 YP_004654009.1 CDS Runsl_0427 NC_015703.1 506233 509418 D PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_1684 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 506233..509418 Runella slithyformis DSM 19594 10868943 YP_004654010.1 CDS Runsl_0428 NC_015703.1 509465 511240 D PFAM: SusD family; Prodigal; This gene is disrupted by complex chromosomal rearrangement; manually curated; RagB/SusD domain-containing protein 509465..511240 Runella slithyformis DSM 19594 10868944 YP_004654011.1 CDS Runsl_0430 NC_015703.1 511829 512035 D Prodigal; manually curated; hypothetical protein 511829..512035 Runella slithyformis DSM 19594 10868945 YP_004654012.1 CDS Runsl_0432 NC_015703.1 513463 514677 D PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; KEGG: sli:Slin_2455 heparinase II/III family protein; SPTR: Heparinase II/III family protein; mandelate racemase 513463..514677 Runella slithyformis DSM 19594 10868947 YP_004654013.1 CDS Runsl_0433 NC_015703.1 514718 516604 D PFAM: Heparinase II/III-like protein; KEGG: rba:RB940 hypothetical protein; SPTR: uncharacterized protein; heparinase II/III family protein 514718..516604 Runella slithyformis DSM 19594 10868948 YP_004654014.1 CDS Runsl_0434 NC_015703.1 516644 518134 D KEGG: sli:Slin_2511 YHS domain protein; SPTR: YHS domain protein; hypothetical protein 516644..518134 Runella slithyformis DSM 19594 10868949 YP_004654015.1 CDS Runsl_0435 NC_015703.1 518153 518596 R KEGG: sli:Slin_0582 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(518153..518596) Runella slithyformis DSM 19594 10868950 YP_004654016.1 CDS Runsl_0436 NC_015703.1 518805 520433 D InterPro IPR010870; KEGG: dfe:Dfer_1082 phosphate-selective porin O and P; PFAM: Phosphate-selective porin O/P; SPTR: Phosphate-selective porin O and P; hypothetical protein 518805..520433 Runella slithyformis DSM 19594 10868951 YP_004654017.1 CDS Runsl_0437 NC_015703.1 520545 521891 R PFAM: Phosphate-selective porin O and P; COGs: COG0446 NAD(FAD)-dependent dehydrogenase; InterPro IPR013027; KEGG: reu:Reut_A1474 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Ferredoxin--NAD(+) reductase; SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; phosphate-selective porin O and P complement(520545..521891) Runella slithyformis DSM 19594 10868952 YP_004654018.1 CDS Runsl_0438 NC_015703.1 522078 523244 R PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG0633 Ferredoxin; InterPro IPR001041; KEGG: azo:azo2528 ferrodoxin; PFAM: Ferredoxin; SPTR: Probable ferrodoxin; ferredoxin--NAD(+) reductase complement(522078..523244) Runella slithyformis DSM 19594 10868953 YP_004654019.1 CDS Runsl_0439 NC_015703.1 523241 523561 R PFAM: 2Fe-2S iron-sulfur cluster binding domain; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: bbt:BBta_1600 3-oxoacyl-(acyl-carrier protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: 3-oxoacyl-(Acyl-carrier protein) reductase; ferredoxin complement(523241..523561) Runella slithyformis DSM 19594 10868954 YP_004654020.1 CDS Runsl_0440 NC_015703.1 523775 524509 R PFAM: short chain dehydrogenase; InterPro IPR006674; KEGG: bbt:BBta_1601 hypothetical protein; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SPTR: uncharacterized protein; 3-oxoacyl-ACP reductase complement(523775..524509) Runella slithyformis DSM 19594 10868955 YP_004654021.1 CDS Runsl_0441 NC_015703.1 524573 525169 R PFAM: HD domain; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: bbt:BBta_1602 succinate-semialdehyde dehydrogenase I (NADP+) (SSDH); PFAM: Aldehyde dehydrogenase; PRIAM: Betaine-aldehyde dehydrogenase; SPTR: succinate-semialdehyde dehydrogenase I (NADP+) (SSDH); metal-dependent phosphohydrolase HD sub domain-containing protein complement(524573..525169) Runella slithyformis DSM 19594 10868956 YP_004654022.1 CDS Runsl_0442 NC_015703.1 525259 526767 R PFAM: Aldehyde dehydrogenase; InterPro IPR006674; KEGG: bbt:BBta_1603 hypothetical protein; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SPTR: uncharacterized protein; betaine aldehyde dehydrogenase complement(525259..526767) Runella slithyformis DSM 19594 10868957 YP_004654023.1 CDS Runsl_0443 NC_015703.1 526771 527358 R PFAM: HD domain; COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterPro IPR008279; KEGG: bbt:BBta_1604 hypothetical protein; PFAM: PEP-utilising enzyme, mobile region; SPTR: Phosphoenolpyruvate synthase; metal-dependent phosphohydrolase HD sub domain-containing protein complement(526771..527358) Runella slithyformis DSM 19594 10868958 YP_004654024.1 CDS Runsl_0444 NC_015703.1 527510 529324 R PFAM: PEP-utilising enzyme, mobile domain; COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterPro IPR002192; KEGG: bbt:BBta_1605 phosphoenolpyruvate synthase (pyruvate, water dikinase) (PEP synthase); PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PRIAM: Pyruvate, water dikinase; SPTR: phosphoenolpyruvate synthase (Pyruvate, water dikinase) (PEP synthase); PEP-utilizing protein mobile subunit complement(527510..529324) Runella slithyformis DSM 19594 10868959 YP_004654025.1 CDS Runsl_0445 NC_015703.1 529459 530532 R PFAM: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: phosphoenolpyruvate synthase; COGs: COG2124 Cytochrome P450; InterPro IPR001128; KEGG: bbt:BBta_1606 cytochrome P450; PFAM: Cytochrome P450; PRIAM: Linalool 8-monooxygenase; SPTR: cytochrome P450; pyruvate, water dikinase complement(529459..530532) Runella slithyformis DSM 19594 10868960 YP_004654026.1 CDS Runsl_0446 NC_015703.1 530750 531985 R PFAM: Cytochrome P450; COGs: COG3947 Response regulator containing CheY-like receiver and SARP domains; InterPro IPR019734:IPR001440; KEGG: bbt:BBta_1607 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: uncharacterized protein; linalool 8-monooxygenase complement(530750..531985) Runella slithyformis DSM 19594 10868961 YP_004654027.1 CDS Runsl_0447 NC_015703.1 532082 533569 R PFAM: Bacterial transcriptional activator domain; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910; KEGG: dfe:Dfer_1455 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; response regulator receiver and SARP domain-containing protein complement(532082..533569) Runella slithyformis DSM 19594 10868962 YP_004654028.1 CDS Runsl_0448 NC_015703.1 533828 536302 R PFAM: TonB-dependent Receptor Plug Domain; InterPro IPR013737:IPR008902; KEGG: rbi:RB2501_00941 rhamnosidase; PFAM: Bacterial alpha-L-rhamnosidase; Bacterial alpha-L-rhamnosidase N-terminal; SPTR: rhamnosidase; TonB-dependent receptor plug complement(533828..536302) Runella slithyformis DSM 19594 10868963 YP_004654029.1 CDS Runsl_0449 NC_015703.1 536440 540060 R PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain; manually curated; alpha-L-rhamnosidase complement(536440..540060) Runella slithyformis DSM 19594 10868964 YP_004654030.1 CDS Runsl_0451 NC_015703.1 540829 541701 R PFAM: Calcineurin-like phosphoesterase; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR006311:IPR008274; KEGG: sli:Slin_1104 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; metallophosphoesterase complement(540829..541701) Runella slithyformis DSM 19594 10868966 YP_004654031.1 CDS Runsl_0452 NC_015703.1 541752 543887 R PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; InterPro IPR001041:IPR002888; KEGG: sli:Slin_1103 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; Ferredoxin; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: (2Fe-2S)-binding domain protein; isoquinoline 1-oxidoreductase complement(541752..543887) Runella slithyformis DSM 19594 10868967 YP_004654032.1 CDS Runsl_0453 NC_015703.1 543963 544424 R PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain; SPTR: uncharacterized protein; isoquinoline 1-oxidoreductase complement(543963..544424) Runella slithyformis DSM 19594 10868968 YP_004654033.1 CDS Runsl_0454 NC_015703.1 545336 545806 D manually curated; hypothetical protein 545336..545806 Runella slithyformis DSM 19594 10868969 YP_004654034.1 CDS Runsl_0456 NC_015703.1 546396 546764 R KEGG: sli:Slin_2632 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(546396..546764) Runella slithyformis DSM 19594 10868971 YP_004654035.1 CDS Runsl_0457 NC_015703.1 546842 548974 R InterPro IPR000086; KEGG: dfe:Dfer_2189 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; hypothetical protein complement(546842..548974) Runella slithyformis DSM 19594 10868972 YP_004654036.1 CDS Runsl_0458 NC_015703.1 549351 550076 D PFAM: NUDIX domain; COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: rfr:Rfer_2445 aldo/keto reductase; PFAM: Aldo/keto reductase; PRIAM: Pyridoxine 4-dehydrogenase; SPTR: Pyridoxine 4-dehydrogenase; NUDIX hydrolase 549351..550076 Runella slithyformis DSM 19594 10868973 YP_004654037.1 CDS Runsl_0459 NC_015703.1 550525 551511 R PFAM: Aldo/keto reductase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: cts:Ctha_0791 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; pyridoxine 4-dehydrogenase complement(550525..551511) Runella slithyformis DSM 19594 10868974 YP_004654038.1 CDS Runsl_0460 NC_015703.1 551611 552501 R PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; Prodigal; manually curated; AraC family transcriptional regulator complement(551611..552501) Runella slithyformis DSM 19594 10868975 YP_004654039.1 CDS Runsl_0462 NC_015703.1 553558 554103 D PFAM: Protein of unknown function (DUF2911); InterPro IPR000421:IPR006104; KEGG: dfe:Dfer_1521 glycoside hydrolase 2 sugar binding; PFAM: Coagulation factor 5/8 type, C-terminal; Glycoside hydrolase 2, carbohydrate-binding; SPTR: Glycoside hydrolase 2 sugar binding; hypothetical protein 553558..554103 Runella slithyformis DSM 19594 10868977 YP_004654040.1 CDS Runsl_0463 NC_015703.1 554222 557527 R PFAM: Glycosyl hydrolases family 2, sugar binding domain; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: dfe:Dfer_3436 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; coagulation factor 5/8 type domain-containing protein complement(554222..557527) Runella slithyformis DSM 19594 10868978 YP_004654041.1 CDS Runsl_0464 NC_015703.1 557588 558469 R PFAM: Xylose isomerase-like TIM barrel; InterPro IPR013097; KEGG: rle:RL2214 hypothetical protein; PFAM: Stress responsive alpha-beta barrel; SPTR: uncharacterized protein; xylose isomerase domain-containing protein complement(557588..558469) Runella slithyformis DSM 19594 10868979 YP_004654042.1 CDS Runsl_0465 NC_015703.1 558517 558810 R PFAM: Stress responsive A/B Barrel Domain; InterPro IPR013737:IPR008902; KEGG: lby:Lbys_2344 alpha-L-rhamnosidase; PFAM: Bacterial alpha-L-rhamnosidase; Bacterial alpha-L-rhamnosidase N-terminal; SPTR: Alpha-L-rhamnosidase; stress responsive alpha-beta barrel domain-containing protein complement(558517..558810) Runella slithyformis DSM 19594 10868980 YP_004654043.1 CDS Runsl_0466 NC_015703.1 558958 561351 R PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain; SPTR: Transposase IS4 family protein; alpha-L-rhamnosidase complement(558958..561351) Runella slithyformis DSM 19594 10868981 YP_004654044.1 CDS Runsl_0467 NC_015703.1 561482 562828 D hypothetical protein 561482..562828 Runella slithyformis DSM 19594 10868982 YP_004654045.1 CDS Runsl_0468 NC_015703.1 562878 562982 D COGs: COG0657 Esterase/lipase; InterPro IPR013094; KEGG: rbi:RB2501_00881 lipase/esterase; SPTR: Probable lipase/esterase; hypothetical protein 562878..562982 Runella slithyformis DSM 19594 10868983 YP_004654046.1 CDS Runsl_0469 NC_015703.1 562962 563876 R PFAM: alpha/beta hydrolase fold; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: pst:PSPTO_3052 major facilitator family transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; lipase/esterase complement(562962..563876) Runella slithyformis DSM 19594 10868984 YP_004654047.1 CDS Runsl_0470 NC_015703.1 564151 565371 R PFAM: Major Facilitator Superfamily; COGs: COG2382 Enterochelin esterase; InterPro IPR004193:IPR000801; KEGG: sli:Slin_1256 esterase; PFAM: esterase; Glycoside hydrolase, family 13, N-terminal; SPTR: esterase; major facilitator superfamily protein complement(564151..565371) Runella slithyformis DSM 19594 10868985 YP_004654048.1 CDS Runsl_0471 NC_015703.1 565450 566589 R PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); esterase; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: sli:Slin_1327 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; esterase complement(565450..566589) Runella slithyformis DSM 19594 10868986 YP_004654049.1 CDS Runsl_0472 NC_015703.1 566827 567504 D PFAM: Protein of unknown function (DUF820); COGs: COG1878 metal-dependent hydrolase; InterPro IPR007325; KEGG: sli:Slin_1543 cyclase; PFAM: cyclase; SPTR: Cyclase; hypothetical protein 566827..567504 Runella slithyformis DSM 19594 10868987 YP_004654050.1 CDS Runsl_0473 NC_015703.1 567552 568313 R PFAM: cyclase; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: sli:Slin_0741 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; cyclase complement(567552..568313) Runella slithyformis DSM 19594 10868988 YP_004654051.1 CDS Runsl_0474 NC_015703.1 568359 568985 D PFAM: Protein of unknown function (DUF820); manually curated; hypothetical protein 568359..568985 Runella slithyformis DSM 19594 10868989 YP_004654052.1 CDS Runsl_0476 NC_015703.1 569186 570139 R PFAM: Fumarylacetoacetate (FAA) hydrolase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: mrb:Mrub_2546 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; fumarylacetoacetate (FAA) hydrolase complement(569186..570139) Runella slithyformis DSM 19594 10868991 YP_004654053.1 CDS Runsl_0477 NC_015703.1 570146 570928 R PFAM: short chain dehydrogenase; COGs: COG0141 Histidinol dehydrogenase; HAMAP: Histidinol dehydrogenase, prokaryotic-type; InterPro IPR012131; KEGG: ara:Arad_12308 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase, prokaryotic-type; PRIAM: Histidinol dehydrogenase; SPTR: Histidinol dehydrogenase; TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; 3-oxoacyl-ACP reductase complement(570146..570928) Runella slithyformis DSM 19594 10868992 YP_004654054.1 CDS Runsl_0478 NC_015703.1 570965 572254 R PFAM: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; COGs: COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; InterPro IPR002938; KEGG: nar:Saro_3428 monooxygenase, FAD-binding; PFAM: Monooxygenase, FAD-binding; SPTR: Monooxygenase, FAD-binding; histidinol dehydrogenase complement(570965..572254) Runella slithyformis DSM 19594 10868993 YP_004654055.1 CDS Runsl_0479 NC_015703.1 572303 573439 R PFAM: FAD binding domain; SPTR: uncharacterized protein; monooxygenase FAD-binding protein complement(572303..573439) Runella slithyformis DSM 19594 10868994 YP_004654056.1 CDS Runsl_0480 NC_015703.1 573567 573809 D COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR010520; KEGG: sli:Slin_1547 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 573567..573809 Runella slithyformis DSM 19594 10868995 YP_004654057.1 CDS Runsl_0481 NC_015703.1 573860 574972 R PFAM: Alpha/beta hydrolase of unknown function (DUF1100); InterPro IPR004360; KEGG: sli:Slin_1548 catechol 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; PRIAM: Biphenyl-2,3-diol 1,2-dioxygenase; SPTR: Catechol 2,3-dioxygenase; hypothetical protein complement(573860..574972) Runella slithyformis DSM 19594 10868996 YP_004654058.1 CDS Runsl_0482 NC_015703.1 575086 576075 R PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG0684 Demethylmenaquinone methyltransferase; KEGG: shg:Sph21_2770 demethylmenaquinone methyltransferase-like protein; SPTR: uncharacterized protein; biphenyl 2,3-dioxygenase complement(575086..576075) Runella slithyformis DSM 19594 10868997 YP_004654059.1 CDS Runsl_0483 NC_015703.1 576613 577566 D PFAM: Demethylmenaquinone methyltransferase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: sli:Slin_1550 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; demethylmenaquinone methyltransferase-like protein 576613..577566 Runella slithyformis DSM 19594 10868998 YP_004654060.1 CDS Runsl_0484 NC_015703.1 577851 578759 R PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: zpr:ZPR_1603 esterase/lipase-like protein; PFAM: Lipase, GDSL; SPTR: Esterase/lipase-like protein; AraC family transcriptional regulator complement(577851..578759) Runella slithyformis DSM 19594 10868999 YP_004654061.1 CDS Runsl_0485 NC_015703.1 578890 580452 R PFAM: GDSL-like Lipase/Acylhydrolase; Dienelactone hydrolase; COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: sli:Slin_2686 LacI family transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; G-D-S-L family lipolytic protein complement(578890..580452) Runella slithyformis DSM 19594 10869000 YP_004654062.1 CDS Runsl_0486 NC_015703.1 580518 581537 R PFAM: Bacterial regulatory proteins, lacI family; family; COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764:IPR002772; KEGG: sli:Slin_2687 glycoside hydrolase; PFAM: Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal; PRIAM: Xylan 1,4-beta-xylosidase; SPTR: Glycoside hydrolase 3 domain protein; LacI family transcriptional regulator complement(580518..581537) Runella slithyformis DSM 19594 10869001 YP_004654063.1 CDS Runsl_0487 NC_015703.1 581824 583848 D PFAM: Glycosyl hydrolase 3 C terminal domain; Glycosyl hydrolase 3 N terminal domain; KEGG: sli:Slin_4148 hypothetical protein; SPTR: uncharacterized protein; xylan 1,4-beta-xylosidase 581824..583848 Runella slithyformis DSM 19594 10869002 YP_004654064.1 CDS Runsl_0488 NC_015703.1 583933 584235 R InterPro IPR010839; KEGG: sli:Slin_4147 hypothetical protein; PFAM: Protein of unknown function DUF1446; SPTR: uncharacterized protein; hypothetical protein complement(583933..584235) Runella slithyformis DSM 19594 10869003 YP_004654065.1 CDS Runsl_0489 NC_015703.1 584249 585577 R PFAM: Protein of unknown function (DUF1446); KEGG: sli:Slin_4519 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(584249..585577) Runella slithyformis DSM 19594 10869004 YP_004654066.1 CDS Runsl_0490 NC_015703.1 585577 586176 R COGs: COG2851 H+/citrate symporter; InterPro IPR014738:IPR004680; KEGG: sli:Slin_4146 citrate/H+ symporter, CitMHS family; PFAM: Divalent ion symporter; SPTR: Citrate/H+ symporter, CitMHS family; TIGRFAM: Citrate transporter; hypothetical protein complement(585577..586176) Runella slithyformis DSM 19594 10869005 YP_004654067.1 CDS Runsl_0491 NC_015703.1 586243 587538 R PFAM: Citrate transporter; TIGRFAM: citrate transporter, CitMHS family; COGs: COG2272 Carboxylesterase type B; InterPro IPR002018; KEGG: sli:Slin_4145 carboxylesterase; PFAM: Carboxylesterase, type B; SPTR: Carboxylesterase; CitMHS family citrate/H+ symporter complement(586243..587538) Runella slithyformis DSM 19594 10869006 YP_004654068.1 CDS Runsl_0492 NC_015703.1 587658 589271 R PFAM: Carboxylesterase; COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: lby:Lbys_0275 esterase; PFAM: esterase; SPTR: Esterase; carboxylesterase type B complement(587658..589271) Runella slithyformis DSM 19594 10869007 YP_004654069.1 CDS Runsl_0493 NC_015703.1 589365 590393 R PFAM: esterase; InterPro IPR006311:IPR012307; KEGG: dfe:Dfer_0286 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; esterase complement(589365..590393) Runella slithyformis DSM 19594 10869008 YP_004654070.1 CDS Runsl_0494 NC_015703.1 590481 591482 R PFAM: Xylose isomerase-like TIM barrel; COGs: COG2272 Carboxylesterase type B; InterPro IPR002018; KEGG: rbi:RB2501_13134 esterase; PFAM: Carboxylesterase, type B; SPTR: esterase; xylose isomerase domain-containing protein complement(590481..591482) Runella slithyformis DSM 19594 10869009 YP_004654071.1 CDS Runsl_0495 NC_015703.1 591533 593167 R PFAM: Carboxylesterase; COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: sli:Slin_0652 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: uncharacterized protein; carboxylesterase type B complement(591533..593167) Runella slithyformis DSM 19594 10869010 YP_004654072.1 CDS Runsl_0496 NC_015703.1 593253 593987 D PFAM: NUDIX domain; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: cpi:Cpin_4312 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; NUDIX hydrolase 593253..593987 Runella slithyformis DSM 19594 10869011 YP_004654073.1 CDS Runsl_0497 NC_015703.1 594568 595590 D PFAM: NAD dependent epimerase/dehydratase; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: cpi:Cpin_4313 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; NAD-dependent epimerase/dehydratase 594568..595590 Runella slithyformis DSM 19594 10869012 YP_004654074.1 CDS Runsl_0498 NC_015703.1 595613 596191 D PFAM: Cyclic nucleotide-binding domain; COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154:IPR013149; KEGG: oih:OB3353 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; PRIAM: L-iditol 2-dehydrogenase; SPTR: Alcohol dehydrogenase; Crp/Fnr family transcriptional regulator 595613..596191 Runella slithyformis DSM 19594 10869013 YP_004654075.1 CDS Runsl_0499 NC_015703.1 596380 597393 R PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: dae:Dtox_3261 filamentation induced by cAMP protein Fic; PFAM: Filamentation induced by cAMP/death on curing, related; SPTR: Filamentation induced by cAMP protein Fic; L-iditol 2-dehydrogenase complement(596380..597393) Runella slithyformis DSM 19594 10869014 YP_004654076.1 CDS Runsl_0500 NC_015703.1 597396 598853 R PFAM: Fic/DOC family; KEGG: sen:SACE_2822 MFS superfamily vanillate transporter; SPTR: Vanillate transporter (MFS superfamily); Fic family protein complement(597396..598853) Runella slithyformis DSM 19594 10869015 YP_004654077.1 CDS Runsl_0501 NC_015703.1 599157 599453 D SPTR: Transposase IS4 family protein; hypothetical protein 599157..599453 Runella slithyformis DSM 19594 10869016 YP_004654078.1 CDS Runsl_0502 NC_015703.1 599552 600898 R COGs: COG2159 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: sli:Slin_1557 amidohydrolase 2; PFAM: Amidohydrolase 2; SPTR: Amidohydrolase 2; hypothetical protein complement(599552..600898) Runella slithyformis DSM 19594 10869017 YP_004654079.1 CDS Runsl_0503 NC_015703.1 601188 602054 R PFAM: Amidohydrolase; amidohydrolase complement(601188..602054) Runella slithyformis DSM 19594 10869018 YP_004654080.1 CDS Runsl_0504 NC_015703.1 602074 602211 D KEGG: pru:PRU_0821 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 602074..602211 Runella slithyformis DSM 19594 10869019 YP_004654081.1 CDS Runsl_0505 NC_015703.1 602222 602578 D PFAM: S23 ribosomal protein; TIGRFAM: TIGR02436 family protein; KEGG: sli:Slin_1558 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 602222..602578 Runella slithyformis DSM 19594 10869020 YP_004654082.1 CDS Runsl_0506 NC_015703.1 602666 603781 R PFAM: Prolyl oligopeptidase; COGs: COG0620 Methionine synthase II (cobalamin-independent); InterPro IPR002629; KEGG: sli:Slin_1559 methionine synthase vitamin-B12 independent; PFAM: Methionine synthase, vitamin-B12 independent; SPTR: Methionine synthase vitamin-B12 independent; hypothetical protein complement(602666..603781) Runella slithyformis DSM 19594 10869021 YP_004654083.1 CDS Runsl_0507 NC_015703.1 603800 604906 R PFAM: Cobalamin-independent synthase, Catalytic domain; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: pag:PLES_27401 short-chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-hydroxy-2-methylbutyryl-CoA dehydrogenase; SPTR: Short-chain dehydrogenase/reductase SDR; vitamin-B12 independent methionine synthase complement(603800..604906) Runella slithyformis DSM 19594 10869022 YP_004654084.1 CDS Runsl_0508 NC_015703.1 604960 605754 R PFAM: short chain dehydrogenase; KEGG: bvu:BVU_0335 hypothetical protein; SPTR: uncharacterized protein; 3-hydroxy-2-methylbutyryl-CoA dehydrogenase complement(604960..605754) Runella slithyformis DSM 19594 10869023 YP_004654085.1 CDS Runsl_0509 NC_015703.1 605839 606240 R COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: sli:Slin_1560 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: AMP-dependent synthetase and ligase; hypothetical protein complement(605839..606240) Runella slithyformis DSM 19594 10869024 YP_004654086.1 CDS Runsl_0510 NC_015703.1 606285 608081 R PFAM: AMP-binding enzyme; COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: sli:Slin_1561 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR: Enoyl-CoA hydratase/isomerase; long-chain-fatty-acid--CoA ligase complement(606285..608081) Runella slithyformis DSM 19594 10869025 YP_004654087.1 CDS Runsl_0511 NC_015703.1 608094 608849 R PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase complement(608094..608849) Runella slithyformis DSM 19594 10869026 YP_004654088.1 CDS Runsl_0512 NC_015703.1 609009 609233 D COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: sli:Slin_1550 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; hypothetical protein 609009..609233 Runella slithyformis DSM 19594 10869027 YP_004654089.1 CDS Runsl_0513 NC_015703.1 609184 610086 R PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain; KEGG: rbi:RB2501_01071 hypothetical protein; SPTR: uncharacterized protein; AraC family transcriptional regulator complement(609184..610086) Runella slithyformis DSM 19594 10869028 YP_004654090.1 CDS Runsl_0514 NC_015703.1 610414 611187 R COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: sli:Slin_2180 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; hypothetical protein complement(610414..611187) Runella slithyformis DSM 19594 10869029 YP_004654091.1 CDS Runsl_0515 NC_015703.1 611344 612231 D PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076:IPR000172; KEGG: sli:Slin_4690 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; AraC family transcriptional regulator 611344..612231 Runella slithyformis DSM 19594 10869030 YP_004654092.1 CDS Runsl_0516 NC_015703.1 612290 614005 R PFAM: GMC oxidoreductase; KEGG: sli:Slin_4689 hypothetical protein; SPTR: uncharacterized protein; glucose-methanol-choline oxidoreductase complement(612290..614005) Runella slithyformis DSM 19594 10869031 YP_004654093.1 CDS Runsl_0517 NC_015703.1 614086 614643 R KEGG: sli:Slin_1562 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(614086..614643) Runella slithyformis DSM 19594 10869032 YP_004654094.1 CDS Runsl_0518 NC_015703.1 614806 615255 R PFAM: Protein of unknown function (DUF3237); COGs: COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; InterPro IPR006076; KEGG: sli:Slin_0336 monooxygenase FAD-binding protein; PFAM: FAD dependent oxidoreductase; SPTR: Monooxygenase FAD-binding protein; hypothetical protein complement(614806..615255) Runella slithyformis DSM 19594 10869033 YP_004654095.1 CDS Runsl_0519 NC_015703.1 615332 616567 R PFAM: FAD binding domain; COGs: COG2814 Arabinose efflux permease; InterPro IPR004812:IPR011701; KEGG: dfe:Dfer_1982 drug resistance transporter, Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1; SPTR: Drug resistance transporter, Bcr/CflA subfamily; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; FAD dependent oxidoreductase complement(615332..616567) Runella slithyformis DSM 19594 10869034 YP_004654096.1 CDS Runsl_0520 NC_015703.1 616748 617941 R PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; Multidrug resistance protein; COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR012793:IPR002155; KEGG: sli:Slin_1532 beta-ketoadipyl CoA thiolase; PRIAM: 3-oxoadipyl-CoA thiolase; SPTR: Beta-ketoadipyl CoA thiolase; TIGRFAM: Beta-ketoadipyl CoA thiolase; Thiolase; Bcr/CflA subfamily drug resistance transporter complement(616748..617941) Runella slithyformis DSM 19594 10869035 YP_004654097.1 CDS Runsl_0521 NC_015703.1 618064 619272 R PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; 3-oxoadipyl-CoA thiolase; COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: dfe:Dfer_4042 hypothetical protein; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; beta-ketoadipyl CoA thiolase complement(618064..619272) Runella slithyformis DSM 19594 10869036 YP_004654098.1 CDS Runsl_0522 NC_015703.1 619269 620399 R COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; InterPro IPR012792:IPR012791:IPR004165; KEGG: sli:Slin_1533 3-oxoacid CoA-transferase subunit beta; PFAM: Coenzyme A transferase; PRIAM: 3-oxoacid CoA-transferase; SPTR: 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; 3-oxoacid CoA-transferase, subunit A; ATPase AAA complement(619269..620399) Runella slithyformis DSM 19594 10869037 YP_004654099.1 CDS Runsl_0523 NC_015703.1 620494 621840 R PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; 3-oxoacid CoA-transferase, A subunit; KEGG: npu:Npun_F0423 hypothetical protein; SPTR: uncharacterized protein; 3-oxoacid CoA-transferase subunit B complement(620494..621840) Runella slithyformis DSM 19594 10869038 YP_004654100.1 CDS Runsl_0524 NC_015703.1 621884 622123 D InterPro IPR003615:IPR002711; KEGG: cyj:Cyan7822_6695 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: HNH endonuclease; hypothetical protein 621884..622123 Runella slithyformis DSM 19594 10869039 YP_004654101.1 CDS Runsl_0525 NC_015703.1 622120 622506 D PFAM: HNH endonuclease; COGs: COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; InterPro IPR002938; KEGG: sli:Slin_1534 4-hydroxybenzoate 3-monooxygenase; PFAM: Monooxygenase, FAD-binding; PRIAM: 4-hydroxybenzoate 3-monooxygenase; SPTR: 4-hydroxybenzoate 3-monooxygenase; HNH endonuclease 622120..622506 Runella slithyformis DSM 19594 10869040 YP_004654102.1 CDS Runsl_0526 NC_015703.1 622509 623699 R PFAM: FAD binding domain; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR012790:IPR012788:IPR000073:IPR003779; KEGG: sli:Slin_1535 3-oxoadipate enol-lactonase; PFAM: Carboxymuconolactone decarboxylase; Alpha/beta hydrolase fold-1; PRIAM: 3-oxoadipate enol-lactonase., 4-carboxymuconolactone decarboxylase; SPTR: 3-oxoadipate enol-lactonase; TIGRFAM: 3-oxoadipate enol-lactonase; 4-carboxymuconolactone decarboxylase; 4-hydroxybenzoate 3-monooxygenase complement(622509..623699) Runella slithyformis DSM 19594 10869041 YP_004654103.1 CDS Runsl_0527 NC_015703.1 623800 624930 R PFAM: Carboxymuconolactone decarboxylase; alpha/beta hydrolase fold; TIGRFAM: 4-carboxymuconolactone decarboxylase; 3-oxoadipate enol-lactonase; COGs: COG0015 Adenylosuccinate lyase; InterPro IPR012789:IPR000362:IPR019468; KEGG: sli:Slin_1536 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: Fumarate lyase; Adenylosuccinate lyase, C-terminal; PRIAM: 3-carboxy-cis,cis-muconate cycloisomerase; SPTR: 3-carboxy-cis,cis-muconate cycloisomerase; TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; 3-oxoadipate enol-lactonase complement(623800..624930) Runella slithyformis DSM 19594 10869042 YP_004654104.1 CDS Runsl_0528 NC_015703.1 625090 626406 R PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; COGs: COG3485 Protocatechuate 3 4-dioxygenase beta subunit; InterPro IPR012786:IPR000627; KEGG: sli:Slin_1537 protocatechuate 3,4-dioxygenase subunit alpha; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; PRIAM: Protocatechuate 3,4-dioxygenase; SPTR: Protocatechuate 3,4-dioxygenase, alpha subunit; TIGRFAM: Protocatechuate 3,4-dioxygenase, alpha subunit; 3-carboxy-cis,cis-muconate cycloisomerase complement(625090..626406) Runella slithyformis DSM 19594 10869043 YP_004654105.1 CDS Runsl_0529 NC_015703.1 626579 627103 R TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; COGs: COG3485 Protocatechuate 3 4-dioxygenase beta subunit; InterPro IPR012785:IPR000627; KEGG: sli:Slin_1538 protocatechuate 3,4-dioxygenase subunit beta; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; PRIAM: Protocatechuate 3,4-dioxygenase; SPTR: Protocatechuate 3,4-dioxygenase, beta subunit; TIGRFAM: Protocatechuate 3,4-dioxygenase, beta subunit; protocatechuate 3,4-dioxygenase subunit alpha complement(626579..627103) Runella slithyformis DSM 19594 10869044 YP_004654106.1 CDS Runsl_0530 NC_015703.1 627235 627942 R PFAM: Protocatechuate 3,4-dioxygenase beta subunit N terminal; Dioxygenase; TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: sli:Slin_1539 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; protocatechuate 3,4-dioxygenase subunit beta complement(627235..627942) Runella slithyformis DSM 19594 10869045 YP_004654107.1 CDS Runsl_0531 NC_015703.1 628187 629059 D PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: sli:Slin_1556 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; AraC family transcriptional regulator 628187..629059 Runella slithyformis DSM 19594 10869046 YP_004654108.1 CDS Runsl_0532 NC_015703.1 629140 630438 R PFAM: Major Facilitator Superfamily; TIGRFAM: benzoate transport; COGs: COG1350 alternative tryptophan synthase beta-subunit (paralog of TrpB); HAMAP: Tryptophan synthase beta chain; InterPro IPR006316:IPR001926; KEGG: cag:Cagg_2123 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Tryptophan synthase; SPTR: uncharacterized protein; TIGRFAM: Tryptophan synthase, beta chain-like; major facilitator superfamily protein complement(629140..630438) Runella slithyformis DSM 19594 10869047 YP_004654109.1 CDS Runsl_0533 NC_015703.1 630746 632116 D PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: pyridoxal-phosphate dependent TrpB-like enzyme; tryptophan synthase subunit beta 630746..632116 Runella slithyformis DSM 19594 10869048 YP_004654110.1 CDS Runsl_0534 NC_015703.1 632412 633512 R hypothetical protein complement(632412..633512) Runella slithyformis DSM 19594 10869049 YP_004654111.1 CDS Runsl_0535 NC_015703.1 633590 633751 D Prodigal; manually curated; hypothetical protein 633590..633751 Runella slithyformis DSM 19594 10869050 YP_004654112.1 CDS Runsl_0537 NC_015703.1 635519 638923 R PFAM: Cytochrome c; HEAT repeat; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type; KEGG: dfe:Dfer_4959 hypothetical protein; SPTR: uncharacterized protein; heme-binding protein complement(635519..638923) Runella slithyformis DSM 19594 10869052 YP_004654113.1 CDS Runsl_0538 NC_015703.1 639561 641492 D PFAM: Heparinase II/III-like protein; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR006584:IPR003088:IPR005084; KEGG: sli:Slin_3440 PKD domain containing protein; PFAM: Carbohydrate binding domain, family 6; PKD; Cytochrome c, class I; SMART: PKD; Cellulose binding, type IV; SPTR: PKD domain containing protein; hypothetical protein 639561..641492 Runella slithyformis DSM 19594 10869053 YP_004654114.1 CDS Runsl_0539 NC_015703.1 641732 644914 D PFAM: Cytochrome c; Trehalose utilisation; Carbohydrate binding module (family 6); PKD domain; COGs: COG0001 Glutamate-1-semialdehyde aminotransferase; HAMAP: Glutamate-1-semialdehyde 2,1-aminomutase; InterPro IPR004639:IPR005814; KEGG: dfe:Dfer_1148 glutamate-1-semialdehyde aminotransferase; PFAM: Aminotransferase class-III; PRIAM: Glutamate-1-semialdehyde 2,1-aminomutase; SPTR: Glutamate-1-semialdehyde 2,1-aminomutase; TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; carbohydrate binding family protein 641732..644914 Runella slithyformis DSM 19594 10869054 YP_004654115.1 CDS Runsl_0540 NC_015703.1 645044 646333 R PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; KEGG: sli:Slin_2013 hypothetical protein; SPTR: uncharacterized protein; glutamate-1-semialdehyde 2,1-aminomutase complement(645044..646333) Runella slithyformis DSM 19594 10869055 YP_004654116.1 CDS Runsl_0541 NC_015703.1 646367 648052 R PFAM: Receptor family ligand binding region; COGs: COG1109 Phosphomannomutase; InterPro IPR005844:IPR005845; KEGG: dfe:Dfer_4939 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; SPTR: Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; hypothetical protein complement(646367..648052) Runella slithyformis DSM 19594 10869056 YP_004654117.1 CDS Runsl_0542 NC_015703.1 648314 650062 R PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro IPR003347; KEGG: dfe:Dfer_4653 transcription factor jumonji JmjC domain protein; SMART: Transcription factor jumonji/aspartyl beta-hydroxylase; SPTR: Transcription factor jumonji jmjC domain protein; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I complement(648314..650062) Runella slithyformis DSM 19594 10869057 YP_004654118.1 CDS Runsl_0543 NC_015703.1 650482 651321 D InterPro IPR010499; KEGG: dfe:Dfer_3911 transcription activator, effector binding; PFAM: Bacterial transcription activator, effector binding; SPTR: Transcription activator, effector binding; transcription factor jumonji jmjC domain-containing protein 650482..651321 Runella slithyformis DSM 19594 10869058 YP_004654119.1 CDS Runsl_0544 NC_015703.1 651473 651925 R PFAM: Bacterial transcription activator, effector binding domain; COGs: COG2764 conserved hypothetical protein; InterPro IPR004360; KEGG: phe:Phep_1228 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; transcription activator effector binding protein complement(651473..651925) Runella slithyformis DSM 19594 10869059 YP_004654120.1 CDS Runsl_0545 NC_015703.1 651937 652365 R PFAM: 3-demethylubiquinone-9 3-methyltransferase; COGs: COG2378 transcriptional regulator protein; InterPro IPR001034:IPR013196; KEGG: sli:Slin_1289 hypothetical protein; SMART: HTH transcriptional regulator, DeoR N-terminal; SPTR: Helix-turn-helix type 11 domain protein; Glyoxalase/bleomycin resistance protein/dioxygenase complement(651937..652365) Runella slithyformis DSM 19594 10869060 YP_004654121.1 CDS Runsl_0546 NC_015703.1 652447 653445 R PFAM: HTH domain; KEGG: dfe:Dfer_0156 hypothetical protein; SPTR: uncharacterized protein; regulatory protein DeoR complement(652447..653445) Runella slithyformis DSM 19594 10869061 YP_004654122.1 CDS Runsl_0547 NC_015703.1 653507 653968 D hypothetical protein 653507..653968 Runella slithyformis DSM 19594 10869062 YP_004654123.1 CDS Runsl_0548 NC_015703.1 654115 654294 D COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: bcj:BCAM2643 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; hypothetical protein 654115..654294 Runella slithyformis DSM 19594 10869063 YP_004654124.1 CDS Runsl_0549 NC_015703.1 654348 655670 R PFAM: Beta-lactamase; beta-lactamase complement(654348..655670) Runella slithyformis DSM 19594 10869064 YP_004654125.1 CDS Runsl_0550 NC_015703.1 655686 656219 R COGs: COG4938 conserved hypothetical protein; KEGG: tye:THEYE_A0523 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(655686..656219) Runella slithyformis DSM 19594 10869065 YP_004654126.1 CDS Runsl_0551 NC_015703.1 656222 657622 R KEGG: sli:Slin_5502 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(656222..657622) Runella slithyformis DSM 19594 10869066 YP_004654127.1 CDS Runsl_0552 NC_015703.1 657820 659133 R KEGG: dfe:Dfer_4482 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(657820..659133) Runella slithyformis DSM 19594 10869067 YP_004654128.1 CDS Runsl_0553 NC_015703.1 659236 659397 R COGs: COG4185 conserved hypothetical protein; KEGG: dfe:Dfer_4483 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(659236..659397) Runella slithyformis DSM 19594 10869068 YP_004654129.1 CDS Runsl_0554 NC_015703.1 659384 659968 R PFAM: Zeta toxin; hypothetical protein complement(659384..659968) Runella slithyformis DSM 19594 10869069 YP_004654130.1 CDS Runsl_0555 NC_015703.1 660046 660285 R COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764:IPR002772:IPR001466; KEGG: dfe:Dfer_2708 beta-lactamase; PFAM: Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal; Beta-lactamase-related; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Beta-lactamase; hypothetical protein complement(660046..660285) Runella slithyformis DSM 19594 10869070 YP_004654131.1 CDS Runsl_0556 NC_015703.1 660481 663543 R PFAM: Glycosyl hydrolase 3 C terminal domain; Glycosyl hydrolase 3 N terminal domain; Beta-lactamase; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466:IPR011659; KEGG: sli:Slin_1815 beta-lactamase; PFAM: Beta-lactamase-related; WD40-like Beta Propeller; SPTR: Beta-lactamase; beta-N-acetylhexosaminidase complement(660481..663543) Runella slithyformis DSM 19594 10869071 YP_004654132.1 CDS Runsl_0557 NC_015703.1 663790 665850 D PFAM: WD40-like Beta Propeller Repeat; Beta-lactamase; InterPro IPR012312; KEGG: lby:Lbys_2912 hypothetical protein; PFAM: Haemerythrin/HHE cation-binding motif; SPTR: uncharacterized protein; beta-lactamase 663790..665850 Runella slithyformis DSM 19594 10869072 YP_004654133.1 CDS Runsl_0558 NC_015703.1 665924 666616 R PFAM: Hemerythrin HHE cation binding domain; COGs: COG2055 Malate/L-lactate dehydrogenase; InterPro IPR003767; KEGG: sli:Slin_0235 malate/L-lactate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase; PRIAM: Malate dehydrogenase; SPTR: Malate/L-lactate dehydrogenase; hemerythrin HHE cation binding domain-containing protein complement(665924..666616) Runella slithyformis DSM 19594 10869073 YP_004654134.1 CDS Runsl_0559 NC_015703.1 666742 667881 R PFAM: Malate/L-lactate dehydrogenase; COGs: COG3391 conserved hypothetical protein; InterPro IPR007312; KEGG: sli:Slin_6217 40-residue YVTN family beta-propeller repeat protein; PFAM: Phosphoesterase; SPTR: 40-residue YVTN family beta-propeller repeat protein; malate dehydrogenase complement(666742..667881) Runella slithyformis DSM 19594 10869074 YP_004654135.1 CDS Runsl_0560 NC_015703.1 667975 670470 R PFAM: Phosphoesterase; 3-carboxy-cis,cis-muconate lactonizing enzyme; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: gvi:glr0280 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: Glr0280 protein; phosphoesterase complement(667975..670470) Runella slithyformis DSM 19594 10869075 YP_004654136.1 CDS Runsl_0561 NC_015703.1 670730 672757 D PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG3391 conserved hypothetical protein; InterPro IPR011964:IPR007312; KEGG: sli:Slin_3396 phosphoesterase; PFAM: Phosphoesterase; SPTR: Phosphoesterase; TIGRFAM: YVTN beta-propeller repeat; TonB-dependent receptor 670730..672757 Runella slithyformis DSM 19594 10869076 YP_004654137.1 CDS Runsl_0562 NC_015703.1 672865 675618 D PFAM: Phosphoesterase; TIGRFAM: 40-residue YVTN family beta-propeller repeat; COGs: COG0076 Glutamate decarboxylase and related PLP-dependent protein; InterPro IPR002129; KEGG: fjo:Fjoh_1514 pyridoxal-dependent decarboxylase; PFAM: Pyridoxal phosphate-dependent decarboxylase; PRIAM: Diaminobutyrate decarboxylase; SPTR: Pyridoxal-dependent decarboxylase; hypothetical protein 672865..675618 Runella slithyformis DSM 19594 10869077 YP_004654138.1 CDS Runsl_0563 NC_015703.1 675699 677096 R PFAM: Pyridoxal-dependent decarboxylase conserved domain; COGs: COG2334 homoserine kinase type II (protein kinase fold); InterPro IPR002575; KEGG: dfe:Dfer_0292 aminoglycoside phosphotransferase; PFAM: Aminoglycoside phosphotransferase; SPTR: Aminoglycoside phosphotransferase; diaminobutyrate decarboxylase complement(675699..677096) Runella slithyformis DSM 19594 10869078 YP_004654139.1 CDS Runsl_0564 NC_015703.1 677346 678332 D PFAM: Phosphotransferase enzyme family; aminoglycoside phosphotransferase 677346..678332 Runella slithyformis DSM 19594 10869079 YP_004654140.1 CDS Runsl_0565 NC_015703.1 678608 678880 D KEGG: sli:Slin_0430 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 678608..678880 Runella slithyformis DSM 19594 10869080 YP_004654141.1 CDS Runsl_0566 NC_015703.1 678794 679414 R PFAM: Late embryogenesis abundant protein; KEGG: sli:Slin_4662 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(678794..679414) Runella slithyformis DSM 19594 10869081 YP_004654142.1 CDS Runsl_0567 NC_015703.1 679654 680811 R PFAM: Protein of unknown function (DUF3179); InterPro IPR000326; KEGG: sli:Slin_4663 phosphoesterase PA-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: Phosphoesterase PA-phosphatase related protein; hypothetical protein complement(679654..680811) Runella slithyformis DSM 19594 10869082 YP_004654143.1 CDS Runsl_0568 NC_015703.1 681072 682622 R PFAM: PAP2 superfamily; KEGG: sli:Slin_4664 hypothetical protein; SPTR: uncharacterized protein; phosphoesterase PA-phosphatase-like protein complement(681072..682622) Runella slithyformis DSM 19594 10869083 YP_004654144.1 CDS Runsl_0569 NC_015703.1 682638 683552 R KEGG: sli:Slin_4666 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(682638..683552) Runella slithyformis DSM 19594 10869084 YP_004654145.1 CDS Runsl_0570 NC_015703.1 683605 684717 R KEGG: dfe:Dfer_0024 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(683605..684717) Runella slithyformis DSM 19594 10869085 YP_004654146.1 CDS Runsl_0571 NC_015703.1 685172 685744 R InterPro IPR019619; PFAM: Protein of unknown function DUF2490; hypothetical protein complement(685172..685744) Runella slithyformis DSM 19594 10869086 YP_004654147.1 CDS Runsl_0572 NC_015703.1 685844 686608 R PFAM: Protein of unknown function (DUF2490); COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dfe:Dfer_0253 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; hypothetical protein complement(685844..686608) Runella slithyformis DSM 19594 10869087 YP_004654148.1 CDS Runsl_0573 NC_015703.1 686695 687846 D PFAM: Glycosyl transferases group 1; KEGG: dfe:Dfer_3713 hypothetical protein; SPTR: uncharacterized protein; group 1 glycosyl transferase 686695..687846 Runella slithyformis DSM 19594 10869088 YP_004654149.1 CDS Runsl_0574 NC_015703.1 687894 688403 R KEGG: lby:Lbys_1640 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(687894..688403) Runella slithyformis DSM 19594 10869089 YP_004654150.1 CDS Runsl_0575 NC_015703.1 688415 689065 R hypothetical protein complement(688415..689065) Runella slithyformis DSM 19594 10869090 YP_004654151.1 CDS Runsl_0576 NC_015703.1 689056 690393 R hypothetical protein complement(689056..690393) Runella slithyformis DSM 19594 10869091 YP_004654152.1 CDS Runsl_0577 NC_015703.1 690399 690641 R hypothetical protein complement(690399..690641) Runella slithyformis DSM 19594 10869092 YP_004654153.1 CDS Runsl_0578 NC_015703.1 690638 690865 R KEGG: lby:Lbys_1639 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(690638..690865) Runella slithyformis DSM 19594 10869093 YP_004654154.1 CDS Runsl_0579 NC_015703.1 690899 691573 R hypothetical protein complement(690899..691573) Runella slithyformis DSM 19594 10869094 YP_004654155.1 CDS Runsl_0580 NC_015703.1 691716 692393 R hypothetical protein complement(691716..692393) Runella slithyformis DSM 19594 10869095 YP_004654156.1 CDS Runsl_0581 NC_015703.1 692421 692867 R COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: lby:Lbys_1637 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; hypothetical protein complement(692421..692867) Runella slithyformis DSM 19594 10869096 YP_004654157.1 CDS Runsl_0582 NC_015703.1 692914 694332 R PFAM: OmpA family; OmpA/MotB domain-containing protein complement(692914..694332) Runella slithyformis DSM 19594 10869097 YP_004654158.1 CDS Runsl_0583 NC_015703.1 694351 694575 D COGs: COG2972 signal transduction protein with a C-terminal ATPase domain; InterPro IPR010559; KEGG: dfe:Dfer_1280 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; hypothetical protein 694351..694575 Runella slithyformis DSM 19594 10869098 YP_004654159.1 CDS Runsl_0584 NC_015703.1 694602 696596 D PFAM: Histidine kinase; 7TM diverse intracellular signalling; 7TMR-DISM extracellular 2; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_1279 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; histidine kinase internal region 694602..696596 Runella slithyformis DSM 19594 10869099 YP_004654160.1 CDS Runsl_0585 NC_015703.1 696600 697355 D PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: dfe:Dfer_4778 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; LytTR family two component transcriptional regulator 696600..697355 Runella slithyformis DSM 19594 10869100 YP_004654161.1 CDS Runsl_0586 NC_015703.1 697358 697918 R PFAM: Protein of unknown function (DUF820); COGs: COG0519 GMP synthase PP-ATPase domain/subunit; HAMAP: GMP synthase [glutamine-hydrolyzing]; InterPro IPR004739:IPR001674:IPR000991:IPR018318; KEGG: dfe:Dfer_2697 GMP synthase; PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; tRNA methyl transferase-like; PRIAM: GMP synthase (glutamine-hydrolyzing); SPTR: GMP synthase [glutamine-hydrolyzing]; TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; hypothetical protein complement(697358..697918) Runella slithyformis DSM 19594 10869101 YP_004654162.1 CDS Runsl_0587 NC_015703.1 698012 699538 D PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit; KEGG: sli:Slin_0996 hypothetical protein; SPTR: uncharacterized protein; GMP synthase 698012..699538 Runella slithyformis DSM 19594 10869102 YP_004654163.1 CDS Runsl_0588 NC_015703.1 699622 701040 D COGs: COG1760 L-serine deaminase; InterPro IPR004644:IPR005131:IPR005130; KEGG: lby:Lbys_1842 L-serine ammonia-lyase; PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain; SPTR: L-serine ammonia-lyase; TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form; hypothetical protein 699622..701040 Runella slithyformis DSM 19594 10869103 YP_004654164.1 CDS Runsl_0589 NC_015703.1 701082 702464 R PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, single chain form; KEGG: rrs:RoseRS_0445 hypothetical protein; SPTR: uncharacterized protein; L-serine dehydratase 1 complement(701082..702464) Runella slithyformis DSM 19594 10869104 YP_004654165.1 CDS Runsl_0590 NC_015703.1 702590 703039 R COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: cbb:CLD_3508 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: transcriptional regulator; hypothetical protein complement(702590..703039) Runella slithyformis DSM 19594 10869105 YP_004654166.1 CDS Runsl_0591 NC_015703.1 703083 704075 R PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC family transcriptional regulator complement(703083..704075) Runella slithyformis DSM 19594 10869106 YP_004654167.1 CDS Runsl_0592 NC_015703.1 704330 705277 R COGs: COG0004 Ammonia permease; InterPro IPR001905; KEGG: sli:Slin_1347 ammonium transporter; PFAM: Ammonium transporter; SPTR: Ammonium transporter; TIGRFAM: Ammonium transporter; hypothetical protein complement(704330..705277) Runella slithyformis DSM 19594 10869107 YP_004654168.1 CDS Runsl_0593 NC_015703.1 706190 707512 R PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter; KEGG: dfe:Dfer_0442 outer membrane protein; SPTR: Outer membrane protein; ammonium transporter complement(706190..707512) Runella slithyformis DSM 19594 10869108 YP_004654169.1 CDS Runsl_0594 NC_015703.1 707627 708979 R InterPro IPR001450; KEGG: sli:Slin_1345 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; hypothetical protein complement(707627..708979) Runella slithyformis DSM 19594 10869109 YP_004654170.1 CDS Runsl_0595 NC_015703.1 709282 709683 R KEGG: dfe:Dfer_0440 acyl-CoA reductase; SPTR: Acyl-CoA reductase; 4Fe-4S ferredoxin complement(709282..709683) Runella slithyformis DSM 19594 10869110 YP_004654171.1 CDS Runsl_0596 NC_015703.1 709763 710785 D PFAM: Acyl-CoA reductase (LuxC); COGs: COG2170 conserved hypothetical protein; HAMAP: Carboxylate-amine ligase ybdK; InterPro IPR011793:IPR006336; KEGG: sli:Slin_1316 glutamate--cysteine ligase; PFAM: Glutamate--cysteine ligase, GCS2; SPTR: Carboxylate-amine ligase Slin_1316; TIGRFAM: Carboxylate-amine ligase, predicted; acyl-CoA reductase 709763..710785 Runella slithyformis DSM 19594 10869111 YP_004654172.1 CDS Runsl_0597 NC_015703.1 710860 711957 R PFAM: Glutamate-cysteine ligase 2(GCS2); TIGRFAM: carboxylate-amine ligase, YbdK family; COGs: COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); KEGG: lby:Lbys_1134 glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase)-like protein; SPTR: Glutathione synthase/ribosomal protein S6 modification enzyme (Glutaminyl transferase)-like protein; carboxylate-amine ligase ybdK complement(710860..711957) Runella slithyformis DSM 19594 10869112 YP_004654173.1 CDS Runsl_0598 NC_015703.1 712026 713090 R COGs: COG4947 conserved hypothetical protein; InterPro IPR000801; KEGG: dfe:Dfer_0438 esterase; PFAM: esterase; SPTR: esterase; glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase)-like protein complement(712026..713090) Runella slithyformis DSM 19594 10869113 YP_004654174.1 CDS Runsl_0599 NC_015703.1 713203 713913 R PFAM: esterase; COGs: COG0854 Pyridoxal phosphate biosynthesis protein; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; InterPro IPR004569; KEGG: dfe:Dfer_4728 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; PRIAM: Pyridoxine 5'-phosphate synthase; SPTR: Pyridoxine 5'-phosphate synthase; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; esterase complement(713203..713913) Runella slithyformis DSM 19594 10869114 YP_004654175.1 CDS Runsl_0600 NC_015703.1 714133 714849 D PFAM: Pyridoxal phosphate biosynthesis protein PdxJ; TIGRFAM: pyridoxine 5'-phosphate synthase; COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006056:IPR006175; KEGG: sli:Slin_4890 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: uncharacterized protein; TIGRFAM: YjgF-like protein; pyridoxine 5'-phosphate synthase 714133..714849 Runella slithyformis DSM 19594 10869115 YP_004654176.1 CDS Runsl_0601 NC_015703.1 714914 715297 D PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR002155; KEGG: sli:Slin_5109 acetyl-CoA acetyltransferase; PRIAM: Acetyl-CoA C-acyltransferase; SPTR: Acetyl-CoA acetyltransferase; TIGRFAM: Thiolase; endoribonuclease L-PSP 714914..715297 Runella slithyformis DSM 19594 10869116 YP_004654177.1 CDS Runsl_0602 NC_015703.1 715366 716544 R PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; KEGG: mtt:Ftrac_3437 hypothetical protein; SPTR: uncharacterized protein; acetyl-CoA acetyltransferase complement(715366..716544) Runella slithyformis DSM 19594 10869117 YP_004654178.1 CDS Runsl_0603 NC_015703.1 716828 721759 D COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: cbg:CbuG_1385 acyltransferase; PFAM: Acyltransferase 3; SPTR: Acyltransferase; hypothetical protein 716828..721759 Runella slithyformis DSM 19594 10869118 YP_004654179.1 CDS Runsl_0604 NC_015703.1 721810 722853 R PFAM: Acyltransferase; KEGG: chu:CHU_1634 hypothetical protein; SPTR: uncharacterized protein; acyltransferase complement(721810..722853) Runella slithyformis DSM 19594 10869119 YP_004654180.1 CDS Runsl_0605 NC_015703.1 722850 724595 R COGs: COG4947 conserved hypothetical protein; KEGG: dfe:Dfer_4768 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(722850..724595) Runella slithyformis DSM 19594 10869120 YP_004654181.1 CDS Runsl_0606 NC_015703.1 724695 725426 R PFAM: esterase; COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: dfe:Dfer_3406 Na+/solute symporter; PFAM: Sodium/solute symporter; SPTR: Na+/solute symporter; hypothetical protein complement(724695..725426) Runella slithyformis DSM 19594 10869121 YP_004654182.1 CDS Runsl_0607 NC_015703.1 725562 726941 D PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: dfe:Dfer_3873 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; Na+/solute symporter 725562..726941 Runella slithyformis DSM 19594 10869122 YP_004654183.1 CDS Runsl_0608 NC_015703.1 726923 727348 R PFAM: NUDIX domain; COGs: COG1512 Beta-propeller domains of methanol dehydrogenase type; InterPro IPR007621; KEGG: sli:Slin_5849 hypothetical protein; PFAM: Protein of unknown function DUF477; SPTR: uncharacterized protein; NUDIX hydrolase complement(726923..727348) Runella slithyformis DSM 19594 10869123 YP_004654184.1 CDS Runsl_0609 NC_015703.1 727489 728256 R PFAM: Domain of unknown function (DUF477); COGs: COG3762 membrane protein; InterPro IPR007621; KEGG: sli:Slin_5848 hypothetical protein; PFAM: Protein of unknown function DUF477; SPTR: uncharacterized protein; hypothetical protein complement(727489..728256) Runella slithyformis DSM 19594 10869124 YP_004654185.1 CDS Runsl_0610 NC_015703.1 728333 728767 R PFAM: Domain of unknown function (DUF477); COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: sli:Slin_5847 LemA family protein; PFAM: LemA; SPTR: LemA family protein; hypothetical protein complement(728333..728767) Runella slithyformis DSM 19594 10869125 YP_004654186.1 CDS Runsl_0611 NC_015703.1 728840 729421 R PFAM: LemA family; InterPro IPR004993; KEGG: dfe:Dfer_3419 GH3 auxin-responsive promoter; PFAM: GH3 auxin-responsive promoter; SPTR: GH3 auxin-responsive promoter; LemA family protein complement(728840..729421) Runella slithyformis DSM 19594 10869126 YP_004654187.1 CDS Runsl_0612 NC_015703.1 729717 731213 R PFAM: GH3 auxin-responsive promoter; COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129; KEGG: sli:Slin_5652 glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase; SPTR: Glycerophosphoryl diester phosphodiesterase; GH3 auxin-responsive promoter complement(729717..731213) Runella slithyformis DSM 19594 10869127 YP_004654188.1 CDS Runsl_0613 NC_015703.1 731336 732181 R PFAM: Glycerophosphoryl diester phosphodiesterase; COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891; KEGG: sli:Slin_5897 pyruvate carboxyltransferase; PFAM: Pyruvate carboxyltransferase; PRIAM: 2-isopropylmalate synthase; SPTR: Pyruvate carboxyltransferase; glycerophosphoryl diester phosphodiesterase complement(731336..732181) Runella slithyformis DSM 19594 10869128 YP_004654189.1 CDS Runsl_0614 NC_015703.1 732605 733759 D PFAM: HMGL-like; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR000172:IPR007867; KEGG: sli:Slin_5650 choline dehydrogenase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal; PRIAM: Choline dehydrogenase; SPTR: Choline dehydrogenase; 2-isopropylmalate synthase 732605..733759 Runella slithyformis DSM 19594 10869129 YP_004654190.1 CDS Runsl_0615 NC_015703.1 733875 735518 R PFAM: GMC oxidoreductase; choline dehydrogenase complement(733875..735518) Runella slithyformis DSM 19594 10869130 YP_004654191.1 CDS Runsl_0616 NC_015703.1 735648 736319 R hypothetical protein complement(735648..736319) Runella slithyformis DSM 19594 10869131 YP_004654192.1 CDS Runsl_0617 NC_015703.1 736341 737003 R COGs: COG1725 transcriptional regulator protein; InterPro IPR000524; KEGG: phe:Phep_3352 regulatory protein GntR; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; SPTR: Regulatory protein GntR HTH; hypothetical protein complement(736341..737003) Runella slithyformis DSM 19594 10869132 YP_004654193.1 CDS Runsl_0618 NC_015703.1 737021 737383 R PFAM: Bacterial regulatory proteins, gntR family; KEGG: cpi:Cpin_7290 hypothetical protein; SPTR: uncharacterized protein; GntR family transcriptional regulator complement(737021..737383) Runella slithyformis DSM 19594 10869133 YP_004654194.1 CDS Runsl_0619 NC_015703.1 737389 738201 R KEGG: cpi:Cpin_7290 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(737389..738201) Runella slithyformis DSM 19594 10869134 YP_004654195.1 CDS Runsl_0620 NC_015703.1 738207 739022 R COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: cpi:Cpin_7291 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; hypothetical protein complement(738207..739022) Runella slithyformis DSM 19594 10869135 YP_004654196.1 CDS Runsl_0621 NC_015703.1 739028 739729 R PFAM: ABC transporter; KEGG: sli:Slin_5041 hypothetical protein; SPTR: uncharacterized protein; ABC transporter complement(739028..739729) Runella slithyformis DSM 19594 10869136 YP_004654197.1 CDS Runsl_0622 NC_015703.1 739948 740565 D COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR013520:IPR006055; KEGG: dfe:Dfer_3900 DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; SPTR: DNA polymerase III, epsilon subunit; hypothetical protein 739948..740565 Runella slithyformis DSM 19594 10869137 YP_004654198.1 CDS Runsl_0623 NC_015703.1 740599 741414 D PFAM: Exonuclease; KEGG: sli:Slin_0793 hypothetical protein; SPTR: uncharacterized protein; Exonuclease RNase T and DNA polymerase III 740599..741414 Runella slithyformis DSM 19594 10869138 YP_004654199.1 CDS Runsl_0624 NC_015703.1 741493 742755 R COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: dfe:Dfer_5607 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein complement(741493..742755) Runella slithyformis DSM 19594 10869139 YP_004654200.1 CDS Runsl_0625 NC_015703.1 742915 744159 D PFAM: Predicted permease; hypothetical protein 742915..744159 Runella slithyformis DSM 19594 10869140 YP_004654201.1 CDS Runsl_0626 NC_015703.1 744834 745181 D InterPro IPR013427; KEGG: sli:Slin_0965 heme-binding protein; SPTR: Heme-binding protein; TIGRFAM: haem-binding region; hypothetical protein 744834..745181 Runella slithyformis DSM 19594 10869142 YP_004654202.1 CDS Runsl_0627 NC_015703.1 745260 747941 R PFAM: Cytochrome c; TIGRFAM: heme-binding domain, Pirellula/Verrucomicrobium type; InterPro IPR012944; KEGG: sli:Slin_0963 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; heme-binding protein complement(745260..747941) Runella slithyformis DSM 19594 10869143 YP_004654203.1 CDS Runsl_0628 NC_015703.1 748117 749625 R PFAM: SusD family; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: sli:Slin_0962 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; RagB/SusD domain-containing protein complement(748117..749625) Runella slithyformis DSM 19594 10869144 YP_004654204.1 CDS Runsl_0629 NC_015703.1 749724 752822 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG1879 ABC-type sugar transport system periplasmic component; InterPro IPR001761; KEGG: sli:Slin_1047 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SPTR: Periplasmic binding protein/LacI transcriptional regulator; TonB-dependent receptor plug complement(749724..752822) Runella slithyformis DSM 19594 10869145 YP_004654205.1 CDS Runsl_0630 NC_015703.1 753121 754050 R PFAM: family; COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: sli:Slin_1048 inner-membrane translocator; PFAM: Bacterial inner-membrane translocator; SPTR: Inner-membrane translocator; periplasmic binding protein/LacI transcriptional regulator complement(753121..754050) Runella slithyformis DSM 19594 10869146 YP_004654206.1 CDS Runsl_0631 NC_015703.1 754172 755125 R PFAM: Branched-chain amino acid transport system / permease component; COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: sli:Slin_1049 ABC transporter; PFAM: ABC transporter-like; PRIAM: Monosaccharide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; ABC transporter permease complement(754172..755125) Runella slithyformis DSM 19594 10869147 YP_004654207.1 CDS Runsl_0632 NC_015703.1 755274 756773 R PFAM: ABC transporter; KEGG: sli:Slin_4611 hypothetical protein; SPTR: uncharacterized protein; monosaccharide-transporting ATPase complement(755274..756773) Runella slithyformis DSM 19594 10869148 YP_004654208.1 CDS Runsl_0633 NC_015703.1 756988 759261 D InterPro IPR002934; KEGG: ppn:Palpr_2605 DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase; SPTR: DNA polymerase beta domain protein region; manually curated; hypothetical protein 756988..759261 Runella slithyformis DSM 19594 10869149 YP_004654209.1 CDS Runsl_0634 NC_015703.1 759409 759729 D PFAM: Nucleotidyltransferase domain; COGs: COG1895 conserved hypothetical protein related to C-terminal domain of eukaryotic chaperone SACSIN; InterPro IPR007842; KEGG: tna:CTN_1578 hypothetical protein; PFAM: HEPN; SPTR: Toxin-antitoxin system antitoxin component; DNA polymerase beta domain-containing protein 759409..759729 Runella slithyformis DSM 19594 10869150 YP_004654210.1 CDS Runsl_0635 NC_015703.1 759726 760112 D PFAM: HEPN domain; COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: dfe:Dfer_2465 hypothetical protein; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; HEPN domain-containing protein 759726..760112 Runella slithyformis DSM 19594 10869151 YP_004654211.1 CDS Runsl_0636 NC_015703.1 760247 761374 R PFAM: Archaeal ATPase; ATPase AAA complement(760247..761374) Runella slithyformis DSM 19594 10869152 YP_004654212.1 CDS Runsl_0637 NC_015703.1 761719 761973 R hypothetical protein complement(761719..761973) Runella slithyformis DSM 19594 10869153 YP_004654213.1 CDS Runsl_0638 NC_015703.1 761957 762811 R KEGG: ami:Amir_5397 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(761957..762811) Runella slithyformis DSM 19594 10869154 YP_004654214.1 CDS Runsl_0639 NC_015703.1 762880 765681 R PFAM: NACHT domain; COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated; hypothetical protein complement(762880..765681) Runella slithyformis DSM 19594 10869155 YP_004654215.1 CDS Runsl_0640 NC_015703.1 765863 766874 D PFAM: Rhodopirellula transposase; 'Paired box' domain; transposase join(765863..766327,766329..766874) Runella slithyformis DSM 19594 10869156 YP_004654216.1 CDS Runsl_0641 NC_015703.1 766833 767420 R COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: sli:Slin_0970 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; hypothetical protein complement(766833..767420) Runella slithyformis DSM 19594 10869157 YP_004654217.1 CDS Runsl_0642 NC_015703.1 767654 768814 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; InterPro IPR012307; KEGG: sli:Slin_0969 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; oxidoreductase domain-containing protein complement(767654..768814) Runella slithyformis DSM 19594 10869158 YP_004654218.1 CDS Runsl_0643 NC_015703.1 768909 769943 R PFAM: Xylose isomerase-like TIM barrel; KEGG: dfe:Dfer_3169 hypothetical protein; SPTR: uncharacterized protein; xylose isomerase domain-containing protein complement(768909..769943) Runella slithyformis DSM 19594 10869159 YP_004654219.1 CDS Runsl_0644 NC_015703.1 770081 771304 R KEGG: sli:Slin_0967 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(770081..771304) Runella slithyformis DSM 19594 10869160 YP_004654220.1 CDS Runsl_0645 NC_015703.1 771697 772719 R COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dfe:Dfer_3171 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; hypothetical protein complement(771697..772719) Runella slithyformis DSM 19594 10869161 YP_004654221.1 CDS Runsl_0646 NC_015703.1 772842 773651 R PFAM: alpha/beta hydrolase fold; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: dfe:Dfer_3172 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; alpha/beta hydrolase complement(772842..773651) Runella slithyformis DSM 19594 10869162 YP_004654222.1 CDS Runsl_0647 NC_015703.1 773755 774582 R PFAM: Xylose isomerase-like TIM barrel; KEGG: dfe:Dfer_3173 signal peptide; SPTR: Signal peptide; xylose isomerase domain-containing protein complement(773755..774582) Runella slithyformis DSM 19594 10869163 YP_004654223.1 CDS Runsl_0648 NC_015703.1 774624 775685 R PFAM: Trehalose utilisation; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: dfe:Dfer_3174 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; hypothetical protein complement(774624..775685) Runella slithyformis DSM 19594 10869164 YP_004654224.1 CDS Runsl_0649 NC_015703.1 775723 776574 R PFAM: Xylose isomerase-like TIM barrel; InterPro IPR010496; KEGG: sli:Slin_0966 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; xylose isomerase domain-containing protein complement(775723..776574) Runella slithyformis DSM 19594 10869165 YP_004654225.1 CDS Runsl_0650 NC_015703.1 776581 777375 R PFAM: Domain of Unknown Function (DUF1080); hypothetical protein complement(776581..777375) Runella slithyformis DSM 19594 10869166 YP_004654226.1 CDS Runsl_0651 NC_015703.1 777527 777769 D COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594:IPR001789; KEGG: dfe:Dfer_2525 PAS/PAC sensor hybrid histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase; hypothetical protein 777527..777769 Runella slithyformis DSM 19594 10869167 YP_004654227.1 CDS Runsl_0652 NC_015703.1 777757 779292 R PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG3287 conserved hypothetical protein; InterPro IPR013702:IPR019494; KEGG: sli:Slin_0140 FIST C domain protein; PFAM: FIST C domain; FIST domain, N-terminal; SPTR: FIST C domain protein; histidine kinase complement(777757..779292) Runella slithyformis DSM 19594 10869168 YP_004654228.1 CDS Runsl_0653 NC_015703.1 779289 780428 R PFAM: FIST C domain; FIST N domain; COGs: COG0384 epimerase PhzC/PhzF homolog; InterPro IPR003719; KEGG: dfe:Dfer_2672 phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; SPTR: Phenazine biosynthesis protein PhzF family; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; FIST C domain-containing protein complement(779289..780428) Runella slithyformis DSM 19594 10869169 YP_004654229.1 CDS Runsl_0654 NC_015703.1 780713 781504 R PFAM: Phenazine biosynthesis-like protein; TIGRFAM: phenazine biosynthesis protein PhzF family; KEGG: sli:Slin_4487 thioredoxin; SPTR: Thioredoxin-related protein-like protein; phenazine biosynthesis protein PhzF family protein complement(780713..781504) Runella slithyformis DSM 19594 10869170 YP_004654230.1 CDS Runsl_0655 NC_015703.1 781708 782232 R PFAM: Protein of unknown function, DUF255; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: sli:Slin_0411 carbohydrate kinase, FGGY-like protein; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; PRIAM: Gluconokinase; SPTR: Carbohydrate kinase, FGGY-like protein; thioredoxin complement(781708..782232) Runella slithyformis DSM 19594 10869171 YP_004654231.1 CDS Runsl_0656 NC_015703.1 782350 783816 R PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: gluconate kinase, FGGY type; COGs: COG1522 Transcriptional regulators; InterPro IPR019887:IPR019888; KEGG: fjo:Fjoh_4658 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type; SPTR: Regulatory protein AsnC; gluconokinase complement(782350..783816) Runella slithyformis DSM 19594 10869172 YP_004654232.1 CDS Runsl_0657 NC_015703.1 783835 784296 R PFAM: AsnC family; KEGG: dfe:Dfer_3925 conserved hypothetical protein, membrane or secreted; SPTR: uncharacterized protein; AsnC family transcriptional regulator complement(783835..784296) Runella slithyformis DSM 19594 10869173 YP_004654233.1 CDS Runsl_0658 NC_015703.1 784382 786955 R COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814:IPR010164; KEGG: sur:STAUR_1193 ornithine-oxo-acid transaminase; PFAM: Aminotransferase class-III; PRIAM: Ornithine aminotransferase; SPTR: Ornithine-oxo-acid transaminase; TIGRFAM: Ornithine aminotransferase; hypothetical protein complement(784382..786955) Runella slithyformis DSM 19594 10869174 YP_004654234.1 CDS Runsl_0659 NC_015703.1 787177 788412 D PFAM: Aminotransferase class-III; TIGRFAM: ornithine aminotransferase; COGs: COG0415 Deoxyribodipyrimidine photolyase; InterPro IPR006050:IPR005101:IPR014133; KEGG: sli:Slin_6186 cryptochrome, DASH family; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal; SPTR: Cryptochrome, DASH family; TIGRFAM: Cryptochrome, DASH; ornithine aminotransferase 787177..788412 Runella slithyformis DSM 19594 10869175 YP_004654235.1 CDS Runsl_0660 NC_015703.1 788482 789921 R PFAM: FAD binding domain of DNA photolyase; DNA photolyase; TIGRFAM: cryptochrome, DASH family; InterPro IPR004360; KEGG: chu:CHU_2533 lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Lactoylglutathione lyase; DASH family cryptochrome complement(788482..789921) Runella slithyformis DSM 19594 10869176 YP_004654236.1 CDS Runsl_0661 NC_015703.1 790196 790585 D PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG0218 GTPase; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; InterPro IPR019987:IPR002917; KEGG: osp:Odosp_1339 GTP-binding protein EngB; PFAM: GTP-binding protein, HSR1-related; SPTR: GTP-binding protein; TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; Glyoxalase/bleomycin resistance protein/dioxygenase 790196..790585 Runella slithyformis DSM 19594 10869177 YP_004654237.1 CDS Runsl_0662 NC_015703.1 790620 791219 D PFAM: GTPase of unknown function; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC/EngB; COGs: COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); InterPro IPR011611:IPR017583; KEGG: dfe:Dfer_4571 1-phosphofructokinase; PFAM: Carbohydrate/purine kinase; PRIAM: 6-phosphofructokinase; SPTR: 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; GTP-binding protein engB 790620..791219 Runella slithyformis DSM 19594 10869178 YP_004654238.1 CDS Runsl_0663 NC_015703.1 791216 792145 D PFAM: pfkB family carbohydrate kinase; TIGRFAM: hexose kinase, 1-phosphofructokinase; COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); InterPro IPR001450; KEGG: dfe:Dfer_4037 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; 1-phosphofructokinase 791216..792145 Runella slithyformis DSM 19594 10869179 YP_004654239.1 CDS Runsl_0664 NC_015703.1 792204 793613 D KEGG: ldb:Ldb1963 hypothetical protein; SPTR: uncharacterized protein; 4Fe-4S ferredoxin 792204..793613 Runella slithyformis DSM 19594 10869180 YP_004654240.1 CDS Runsl_0665 NC_015703.1 793614 794120 R COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: sli:Slin_0514 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: tRNA/rRNA methyltransferase (SpoU); hypothetical protein complement(793614..794120) Runella slithyformis DSM 19594 10869181 YP_004654241.1 CDS Runsl_0666 NC_015703.1 794214 794756 R PFAM: SpoU rRNA Methylase; COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: sli:Slin_3480 peptidase M16 domain protein; PFAM: Peptidase M16, N-terminal; Peptidase M16, C-terminal; PRIAM: processing peptidase; SPTR: Peptidase M16 domain protein; tRNA/rRNA methyltransferase SpoU complement(794214..794756) Runella slithyformis DSM 19594 10869182 YP_004654242.1 CDS Runsl_0667 NC_015703.1 794873 796111 D PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16); COGs: COG4122 O-methyltransferase; InterPro IPR002935; KEGG: dfe:Dfer_2897 O-methyltransferase 3; PFAM: O-methyltransferase, family 3; PRIAM: Caffeoyl-CoA O-methyltransferase; SPTR: O-methyltransferase 3; processing peptidase 794873..796111 Runella slithyformis DSM 19594 10869183 YP_004654243.1 CDS Runsl_0668 NC_015703.1 796247 796888 D PFAM: O-methyltransferase; InterPro IPR008258:IPR018392:IPR002482; KEGG: sli:Slin_0474 peptidoglycan-binding lysin domain protein; PFAM: Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SPTR: Peptidoglycan-binding lysin domain protein; caffeoyl-CoA O-methyltransferase 796247..796888 Runella slithyformis DSM 19594 10869184 YP_004654244.1 CDS Runsl_0669 NC_015703.1 796909 799083 D PFAM: Transglycosylase SLT domain; LysM domain; KEGG: mtt:Ftrac_0122 hypothetical protein; SPTR: uncharacterized protein; lytic transglycosylase 796909..799083 Runella slithyformis DSM 19594 10869185 YP_004654245.1 CDS Runsl_0670 NC_015703.1 799080 799643 D PFAM: Protein of unknown function (DUF3109); COGs: COG3695 methylated DNA-protein cysteine methyltransferase; InterPro IPR014048; KEGG: sli:Slin_0476 methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding protein; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; SPTR: Methylated-DNA-(Protein)-cysteine S-methyltransferase DNA binding protein; hypothetical protein 799080..799643 Runella slithyformis DSM 19594 10869186 YP_004654246.1 CDS Runsl_0671 NC_015703.1 799681 800010 D PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_2542 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein; methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding protein 799681..800010 Runella slithyformis DSM 19594 10869187 YP_004654247.1 CDS Runsl_0672 NC_015703.1 800131 802137 D PFAM: WD40-like Beta Propeller Repeat; OmpA family; OmpA/MotB domain-containing protein 800131..802137 Runella slithyformis DSM 19594 10869188 YP_004654248.1 CDS Runsl_0673 NC_015703.1 802256 803065 D hypothetical protein 802256..803065 Runella slithyformis DSM 19594 10869189 YP_004654249.1 CDS Runsl_0674 NC_015703.1 803445 803618 D hypothetical protein 803445..803618 Runella slithyformis DSM 19594 10869190 YP_004654250.1 CDS Runsl_0675 NC_015703.1 803809 804204 D InterPro IPR002559; KEGG: app:CAP2UW1_1881 transposase IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase IS4 family protein; hypothetical protein 803809..804204 Runella slithyformis DSM 19594 10869191 YP_004654251.1 CDS Runsl_0676 NC_015703.1 804334 805350 D PFAM: Transposase DDE domain; COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310; KEGG: sli:Slin_1055 histidine triad (HIT) protein; PFAM: Histidine triad (HIT) protein; SPTR: Histidine triad (HIT) protein; transposase IS4 family protein 804334..805350 Runella slithyformis DSM 19594 10869192 YP_004654252.1 CDS Runsl_0677 NC_015703.1 805463 805852 R PFAM: HIT domain; KEGG: lby:Lbys_2206 thrombospondin type 3 repeat-containing protein; SPTR: Thrombospondin type 3 repeat-containing protein; histidine triad (HIT) protein complement(805463..805852) Runella slithyformis DSM 19594 10869193 YP_004654253.1 CDS Runsl_0678 NC_015703.1 805927 806646 R COGs: COG0480 Translation elongation factors (GTPase); InterProIPR000795:IPR004161:IPR005517:IPR000640:IPR 004540:IPR005225; KEGG: sli:Slin_5571 translation elongation factor G; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; SPTR: Elongation factor G; TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; thrombospondin type 3 repeat-containing protein complement(805927..806646) Runella slithyformis DSM 19594 10869194 YP_004654254.1 CDS Runsl_0679 NC_015703.1 806949 809057 D PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain; COGs: COG0051 Ribosomal protein S10; HAMAP: 30S ribosomal protein S10; InterPro IPR001848:IPR005731; KEGG: sli:Slin_5570 ribosomal protein S10; PFAM: Ribosomal protein S10; SPTR: 30S ribosomal protein S10; TIGRFAM: Ribosomal protein S10, bacterial; translation elongation factor G 806949..809057 Runella slithyformis DSM 19594 10869195 YP_004654255.1 CDS Runsl_0680 NC_015703.1 809147 809503 D PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle; 30S ribosomal protein S10 809147..809503 Runella slithyformis DSM 19594 10869196 YP_004654256.1 CDS Runsl_0681 NC_015703.1 809737 809892 R hypothetical protein complement(809737..809892) Runella slithyformis DSM 19594 10869197 YP_004654257.1 CDS Runsl_0682 NC_015703.1 810172 810351 D InterPro IPR000792; KEGG: ppm:PPSC2_c0399 transcriptional regulatory protein DegU (protease production enhancerprotein); PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: Transcriptional regulatory protein DegU (Protease production enhancerprotein); hypothetical protein 810172..810351 Runella slithyformis DSM 19594 10869198 YP_004654258.1 CDS Runsl_0683 NC_015703.1 810356 810646 D PFAM: Bacterial regulatory proteins, luxR family; LuxR family transcriptional regulator 810356..810646 Runella slithyformis DSM 19594 10869199 YP_004654259.1 CDS Runsl_0684 NC_015703.1 810820 811641 D hypothetical protein 810820..811641 Runella slithyformis DSM 19594 10869200 YP_004654260.1 CDS Runsl_0685 NC_015703.1 811720 812238 D InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_4749 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein 811720..812238 Runella slithyformis DSM 19594 10869201 YP_004654261.1 CDS Runsl_0686 NC_015703.1 812311 814638 D PFAM: TonB-dependent Receptor Plug Domain; TonB-dependent receptor plug 812311..814638 Runella slithyformis DSM 19594 10869202 YP_004654262.1 CDS Runsl_0687 NC_015703.1 814638 815483 D COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sli:Slin_4261 sulfatase; PFAM: Sulfatase; PRIAM: Cerebroside-sulfatase; SPTR: Sulfatase; hypothetical protein 814638..815483 Runella slithyformis DSM 19594 10869203 YP_004654263.1 CDS Runsl_0688 NC_015703.1 815505 817019 R PFAM: Sulfatase; KEGG: cao:Celal_1651 hypothetical protein; SPTR: uncharacterized protein; Cerebroside-sulfatase complement(815505..817019) Runella slithyformis DSM 19594 10869204 YP_004654264.1 CDS Runsl_0689 NC_015703.1 817221 817958 D KEGG: dfe:Dfer_1170 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 817221..817958 Runella slithyformis DSM 19594 10869205 YP_004654265.1 CDS Runsl_0690 NC_015703.1 818038 819069 D Prodigal; manually curated; hypothetical protein 818038..819069 Runella slithyformis DSM 19594 10869206 YP_004654266.1 CDS Runsl_0692 NC_015703.1 821153 822625 D PFAM: Sulfatase; COGs: COG2989 conserved hypothetical protein; InterPro IPR002477:IPR005490; KEGG: cpi:Cpin_0941 ErfK/YbiS/YcfS/YnhG family protein; PFAM: YkuD domain; Peptidoglycan binding-like; SPTR: ErfK/YbiS/YcfS/YnhG family protein; Cerebroside-sulfatase 821153..822625 Runella slithyformis DSM 19594 10869208 YP_004654267.1 CDS Runsl_0693 NC_015703.1 822871 824535 D PFAM: peptidoglycan binding domain; L,D-transpeptidase catalytic domain; COGs: COG0443 Molecular chaperone; InterPro IPR013126; KEGG: sli:Slin_1429 DnaK-type molecular chaperone DnaK; PFAM: Heat shock protein 70; SPTR: DnaK-type molecular chaperone DnaK; ErfK/YbiS/YcfS/YnhG family protein 822871..824535 Runella slithyformis DSM 19594 10869209 YP_004654268.1 CDS Runsl_0694 NC_015703.1 824546 825823 D PFAM: Hsp70 protein; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_5135 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; molecular chaperone DnaK 824546..825823 Runella slithyformis DSM 19594 10869210 YP_004654269.1 CDS Runsl_0695 NC_015703.1 825807 827099 R PFAM: Outer membrane efflux protein; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: dfe:Dfer_5136 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; outer membrane efflux protein complement(825807..827099) Runella slithyformis DSM 19594 10869211 YP_004654270.1 CDS Runsl_0696 NC_015703.1 827251 830355 R PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_5137 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; acriflavin resistance protein complement(827251..830355) Runella slithyformis DSM 19594 10869212 YP_004654271.1 CDS Runsl_0697 NC_015703.1 830352 831422 R PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; RND family efflux transporter MFP subunit complement(830352..831422) Runella slithyformis DSM 19594 10869213 YP_004654272.1 CDS Runsl_0698 NC_015703.1 831965 832285 R KEGG: sli:Slin_1872 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(831965..832285) Runella slithyformis DSM 19594 10869214 YP_004654273.1 CDS Runsl_0699 NC_015703.1 832717 833925 R PFAM: Protein of unknown function (DUF3570); KEGG: sli:Slin_1873 lipoprotein; SPTR: lipoprotein; hypothetical protein complement(832717..833925) Runella slithyformis DSM 19594 10869215 YP_004654274.1 CDS Runsl_0700 NC_015703.1 834002 834223 R COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: cpi:Cpin_5765 ApbE family lipoprotein; PFAM: ApbE-like lipoprotein; SPTR: ApbE family lipoprotein; lipoprotein complement(834002..834223) Runella slithyformis DSM 19594 10869216 YP_004654275.1 CDS Runsl_0701 NC_015703.1 834262 835191 R PFAM: ApbE family; KEGG: sli:Slin_1875 hypothetical protein; SPTR: uncharacterized protein; ApbE family lipoprotein complement(834262..835191) Runella slithyformis DSM 19594 10869217 YP_004654276.1 CDS Runsl_0702 NC_015703.1 835202 835645 R PFAM: AhpC/TSA family; InterPro IPR017941; KEGG: sli:Slin_1876 Rieske (2Fe-2S) iron-sulphur domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Rieske (2Fe-2S) iron-sulphur domain protein; hypothetical protein complement(835202..835645) Runella slithyformis DSM 19594 10869218 YP_004654277.1 CDS Runsl_0703 NC_015703.1 835672 836172 R PFAM: Rieske [2Fe-2S] domain; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_0332 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; Rieske (2Fe-2S) domain-containing protein complement(835672..836172) Runella slithyformis DSM 19594 10869219 YP_004654278.1 CDS Runsl_0704 NC_015703.1 836512 839058 R PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_0331 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; TonB-dependent receptor plug complement(836512..839058) Runella slithyformis DSM 19594 10869220 YP_004654279.1 CDS Runsl_0705 NC_015703.1 839397 840509 D PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_3280 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; signal transduction histidine kinase 839397..840509 Runella slithyformis DSM 19594 10869221 YP_004654280.1 CDS Runsl_0706 NC_015703.1 840499 841248 D PFAM: Response regulator receiver domain; LytTr DNA-binding domain; KEGG: dfe:Dfer_4613 hypothetical protein; SPTR: uncharacterized protein; LytTR family two component transcriptional regulator 840499..841248 Runella slithyformis DSM 19594 10869222 YP_004654281.1 CDS Runsl_0707 NC_015703.1 841333 842544 R InterPro IPR000834; KEGG: gau:GAU_2982 hypothetical protein; PFAM: Peptidase M14, carboxypeptidase A; SMART: Peptidase M14, carboxypeptidase A; SPTR: peptidase M14, carboxypeptidase A; hypothetical protein complement(841333..842544) Runella slithyformis DSM 19594 10869223 YP_004654282.1 CDS Runsl_0708 NC_015703.1 842822 844738 D PFAM: Zinc carboxypeptidase; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sfu:Sfum_1138 beta-lactamase domain-containing protein; SPTR: Beta-lactamase domain protein; peptidase M14 carboxypeptidase A 842822..844738 Runella slithyformis DSM 19594 10869224 YP_004654283.1 CDS Runsl_0709 NC_015703.1 844866 845582 R PFAM: Metallo-beta-lactamase superfamily; COGs: COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase glutamine amidotransferase domain; HAMAP: Phosphoribosylformylglycinamidine synthase 1; InterPro IPR011698:IPR010075; KEGG: lby:Lbys_3066 phosphoribosylformylglycinamidine synthase subunit I; PFAM: CobB/CobQ-like glutamine amidotransferase; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: Phosphoribosylformylglycinamidine synthase subunit I; TIGRFAM: Phosphoribosylformylglycinamidine synthase I; hypothetical protein complement(844866..845582) Runella slithyformis DSM 19594 10869225 YP_004654284.1 CDS Runsl_0710 NC_015703.1 845812 846498 D PFAM: CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: phosphoribosylformylglycinamidine synthase I; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: dfe:Dfer_3196 surface antigen (D15); PFAM: Bacterial surface antigen (D15); SPTR: Surface antigen (D15); phosphoribosylformylglycinamidine synthase 1 845812..846498 Runella slithyformis DSM 19594 10869226 YP_004654285.1 CDS Runsl_0711 NC_015703.1 846572 848914 R PFAM: Surface antigen; InterPro IPR007452; KEGG: dfe:Dfer_3195 protein of unknown function DUF490; PFAM: Protein of unknown function DUF490; SPTR: uncharacterized protein; manually curated; surface antigen (D15) complement(846572..848914) Runella slithyformis DSM 19594 10869227 YP_004654286.1 CDS Runsl_0712 NC_015703.1 848911 853686 R PFAM: Family of unknown function (DUF490); KEGG: dfe:Dfer_3194 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(848911..853686) Runella slithyformis DSM 19594 10869228 YP_004654287.1 CDS Runsl_0713 NC_015703.1 853808 854539 R hypothetical protein complement(853808..854539) Runella slithyformis DSM 19594 10869229 YP_004654288.1 CDS Runsl_0714 NC_015703.1 854561 854719 D COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; InterPro IPR005475:IPR005476; KEGG: lby:Lbys_1402 transketolase central region; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: Pyruvate dehydrogenase (acetyl-transferring); SPTR: Transketolase central region; hypothetical protein 854561..854719 Runella slithyformis DSM 19594 10869230 YP_004654289.1 CDS Runsl_0715 NC_015703.1 854768 855751 R PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; COGs: COG2124 Cytochrome P450; InterPro IPR001128; KEGG: sli:Slin_0451 cytochrome P450; PFAM: Cytochrome P450; PRIAM: Unspecific monooxygenase; SPTR: Cytochrome P450; manually curated; pyruvate dehydrogenase complement(854768..855751) Runella slithyformis DSM 19594 10869231 YP_004654290.1 CDS Runsl_0716 NC_015703.1 855918 857309 R PFAM: Cytochrome P450; COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: dfe:Dfer_2377 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; monooxygenase complement(855918..857309) Runella slithyformis DSM 19594 10869232 YP_004654291.1 CDS Runsl_0717 NC_015703.1 857537 858430 D PFAM: OmpA family; SPTR: Transposase IS4 family protein; OmpA/MotB domain-containing protein 857537..858430 Runella slithyformis DSM 19594 10869233 YP_004654292.1 CDS Runsl_0718 NC_015703.1 858463 859809 R COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151:IPR004447; KEGG: sli:Slin_3923 carboxyl-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: Carboxyl-terminal protease; TIGRFAM: Peptidase S41A, C-terminal protease; hypothetical protein complement(858463..859809) Runella slithyformis DSM 19594 10869234 YP_004654293.1 CDS Runsl_0719 NC_015703.1 860000 861652 D PFAM: Peptidase S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_4671 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; carboxyl-terminal protease 860000..861652 Runella slithyformis DSM 19594 10869235 YP_004654294.1 CDS Runsl_0720 NC_015703.1 861861 862634 R PFAM: short chain dehydrogenase; Prodigal; manually curated; 3-oxoacyl-ACP reductase complement(861861..862634) Runella slithyformis DSM 19594 10869236 YP_004654295.1 CDS Runsl_0722 NC_015703.1 863316 864503 R PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase; COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase; HAMAP: nicotinate-nucleotide adenylyltransferase; InterPro IPR004820:IPR004821:IPR005248; KEGG: sli:Slin_5549 nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: Cytidylyltransferase; PRIAM: Nicotinate-nucleotide adenylyltransferase; SPTR: Probable nicotinate-nucleotide adenylyltransferase; TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; amidohydrolase complement(863316..864503) Runella slithyformis DSM 19594 10869238 YP_004654296.1 CDS Runsl_0723 NC_015703.1 864627 865199 D PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain; COGs: COG0236 Acyl carrier protein; HAMAP: Acyl carrier protein (ACP); InterPro IPR003231:IPR006163; KEGG: mtt:Ftrac_1173 acyl carrier protein; PFAM: Phosphopantetheine-binding; SPTR: Acyl carrier protein 1; TIGRFAM: Acyl carrier protein (ACP); nicotinate-nucleotide adenylyltransferase 864627..865199 Runella slithyformis DSM 19594 10869239 YP_004654297.1 CDS Runsl_0724 NC_015703.1 865257 865493 D PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein; COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030:IPR014031:IPR017568; KEGG: dfe:Dfer_3915 3-oxoacyl-(acyl-carrier-protein) synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase II; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase 2; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; acyl carrier protein 865257..865493 Runella slithyformis DSM 19594 10869240 YP_004654298.1 CDS Runsl_0725 NC_015703.1 865524 866771 D PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II; COGs: COG0571 dsRNA-specific ribonuclease; HAMAP: Ribonuclease III, bacterial; InterPro IPR011907:IPR000999:IPR001159; KEGG: dfe:Dfer_3916 ribonuclease III; PFAM: Ribonuclease III; Double-stranded RNA binding; PRIAM: Ribonuclease III; SMART: Ribonuclease III; Double-stranded RNA binding; SPTR: Ribonuclease 3; TIGRFAM: Ribonuclease III, bacterial; 3-oxoacyl-ACP synthase 865524..866771 Runella slithyformis DSM 19594 10869241 YP_004654299.1 CDS Runsl_0726 NC_015703.1 866787 867533 D PFAM: RNase3 domain; Double-stranded RNA binding motif; TIGRFAM: ribonuclease III, bacterial; ribonuclease 3 866787..867533 Runella slithyformis DSM 19594 10869242 YP_004654300.1 CDS Runsl_0727 NC_015703.1 867534 867638 R InterPro IPR002559; KEGG: app:CAP2UW1_1881 transposase IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase IS4 family protein; hypothetical protein complement(867534..867638) Runella slithyformis DSM 19594 10869243 YP_004654301.1 CDS Runsl_0728 NC_015703.1 867751 868767 D PFAM: Transposase DDE domain; transposase IS4 family protein 867751..868767 Runella slithyformis DSM 19594 10869244 YP_004654302.1 CDS Runsl_0729 NC_015703.1 868804 869310 D hypothetical protein 868804..869310 Runella slithyformis DSM 19594 10869245 YP_004654303.1 CDS Runsl_0730 NC_015703.1 869433 869792 D hypothetical protein 869433..869792 Runella slithyformis DSM 19594 10869246 YP_004654304.1 CDS Runsl_0731 NC_015703.1 869926 870387 D KEGG: dfe:Dfer_3662 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 869926..870387 Runella slithyformis DSM 19594 10869247 YP_004654305.1 CDS Runsl_0732 NC_015703.1 870556 871179 R InterPro IPR013211; KEGG: sli:Slin_5493 hypothetical protein; PFAM: LVIVD; SPTR: uncharacterized protein; hypothetical protein complement(870556..871179) Runella slithyformis DSM 19594 10869248 YP_004654306.1 CDS Runsl_0733 NC_015703.1 871204 872487 R COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; KEGG: sli:Slin_5757 superfamily I DNA and RNA helicase and helicase subunits-like protein; SPTR: Superfamily I DNA and RNA helicase and helicase subunits-like protein; LVIVD repeat-containing protein complement(871204..872487) Runella slithyformis DSM 19594 10869249 YP_004654307.1 CDS Runsl_0734 NC_015703.1 872596 876567 R KEGG: cao:Celal_1424 hypothetical protein; SPTR: uncharacterized protein; superfamily I DNA and RNA helicase and helicase subunits-like protein complement(872596..876567) Runella slithyformis DSM 19594 10869250 YP_004654308.1 CDS Runsl_0735 NC_015703.1 876554 876907 R KEGG: sli:Slin_3044 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(876554..876907) Runella slithyformis DSM 19594 10869251 YP_004654309.1 CDS Runsl_0736 NC_015703.1 877056 877244 D InterPro IPR014127; KEGG: dfe:Dfer_5052 hypothetical protein; PFAM: Conserved hypothetical protein CHP02757; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02757; hypothetical protein 877056..877244 Runella slithyformis DSM 19594 10869252 YP_004654310.1 CDS Runsl_0737 NC_015703.1 877244 878014 D PFAM: Protein of unknown function (DUF2400); TIGRFAM: TIGR02757 family protein; hypothetical protein 877244..878014 Runella slithyformis DSM 19594 10869253 YP_004654311.1 CDS Runsl_0738 NC_015703.1 878090 878242 D COGs: COG3744 conserved hypothetical protein; InterPro IPR002716; KEGG: sli:Slin_3651 PilT protein domain protein; PFAM: PilT protein, N-terminal; SPTR: PilT protein domain protein; hypothetical protein 878090..878242 Runella slithyformis DSM 19594 10869254 YP_004654312.1 CDS Runsl_0739 NC_015703.1 878242 878655 D PFAM: PIN domain; COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: lpp:plpp0112 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: Nucleotidyltransferase plus glutamate rich protein grpb plus ribosomal protein alanine acetyltransferase; twitching motility protein PilT 878242..878655 Runella slithyformis DSM 19594 10869255 YP_004654313.1 CDS Runsl_0740 NC_015703.1 878667 879173 R PFAM: Acetyltransferase (GNAT) family; InterPro IPR006976; KEGG: dfe:Dfer_1230 VanZ family protein; PFAM: VanZ like protein; SPTR: VanZ family protein; N-acetyltransferase GCN5 complement(878667..879173) Runella slithyformis DSM 19594 10869256 YP_004654314.1 CDS Runsl_0741 NC_015703.1 879180 879548 R PFAM: VanZ like family; COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; HAMAP: Isopropylmalate dehydrogenase; InterPro IPR004429:IPR001804; KEGG: dfe:Dfer_3671 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; PRIAM: 3-isopropylmalate dehydrogenase; SPTR: 3-isopropylmalate dehydrogenase; TIGRFAM: Isopropylmalate dehydrogenase; VanZ family protein complement(879180..879548) Runella slithyformis DSM 19594 10869257 YP_004654315.1 CDS Runsl_0742 NC_015703.1 879656 880729 R PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; KEGG: mtt:Ftrac_0562 hypothetical protein; SPTR: uncharacterized protein; 3-isopropylmalate dehydrogenase complement(879656..880729) Runella slithyformis DSM 19594 10869258 YP_004654316.1 CDS Runsl_0743 NC_015703.1 880779 881156 R COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891:IPR013709; KEGG: sli:Slin_5900 pyruvate carboxyltransferase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; PRIAM: (R)-citramalate synthase; SPTR: Pyruvate carboxyltransferase; hypothetical protein complement(880779..881156) Runella slithyformis DSM 19594 10869259 YP_004654317.1 CDS Runsl_0744 NC_015703.1 881187 882686 R PFAM: LeuA allosteric (dimerisation) domain; HMGL-like; COGs: COG0066 3-isopropylmalate dehydratase small subunit; InterPro IPR000573:IPR004431; KEGG: dfe:Dfer_3673 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel; SPTR: 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit region; (R)-citramalate synthase complement(881187..882686) Runella slithyformis DSM 19594 10869260 YP_004654318.1 CDS Runsl_0745 NC_015703.1 882707 883303 R PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; COGs: COG0065 3-isopropylmalate dehydratase large subunit; InterPro IPR001030:IPR004430; KEGG: dfe:Dfer_3675 isopropylmalate isomerase large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; SPTR: 3-isopropylmalate dehydratase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit region; 3-isopropylmalate dehydratase small subunit complement(882707..883303) Runella slithyformis DSM 19594 10869261 YP_004654319.1 CDS Runsl_0746 NC_015703.1 883318 884721 R PFAM: Aconitase (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: sli:Slin_5908 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; 3-isopropylmalate dehydratase large subunit complement(883318..884721) Runella slithyformis DSM 19594 10869262 YP_004654320.1 CDS Runsl_0747 NC_015703.1 884838 885680 R PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: lby:Lbys_0758 hypothetical protein; SPTR: uncharacterized protein; AraC family transcriptional regulator complement(884838..885680) Runella slithyformis DSM 19594 10869263 YP_004654321.1 CDS Runsl_0748 NC_015703.1 885769 885987 R COGs: COG2361 conserved hypothetical protein; InterPro IPR008201; KEGG: rca:Rcas_0089 hypothetical protein; PFAM: Protein of unknown function DUF86; SPTR: uncharacterized protein; manually curated; hypothetical protein complement(885769..885987) Runella slithyformis DSM 19594 10869264 YP_004654322.1 CDS Runsl_0749 NC_015703.1 886071 886322 R PFAM: Protein of unknown function DUF86; Prodigal; manually curated; hypothetical protein complement(886071..886322) Runella slithyformis DSM 19594 10869265 YP_004654323.1 CDS Runsl_0751 NC_015703.1 886663 886899 R PFAM: YcfA-like protein; InterPro IPR005357; KEGG: mhu:Mhun_2648 hypothetical protein; PFAM: Uncharacterised protein family UPF0150; SPTR: uncharacterized protein; hypothetical protein complement(886663..886899) Runella slithyformis DSM 19594 10869267 YP_004654324.1 CDS Runsl_0752 NC_015703.1 886899 887126 R PFAM: Uncharacterised protein family (UPF0150); COGs: COG1171 Threonine dehydratase; InterPro IPR001926:IPR001721:IPR011820; KEGG: sli:Slin_5911 threonine dehydratase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threonine dehydratase, C-terminal; SPTR: Threonine dehydratase; TIGRFAM: Threonine dehydratase; hypothetical protein complement(886899..887126) Runella slithyformis DSM 19594 10869268 YP_004654325.1 CDS Runsl_0753 NC_015703.1 887142 888425 R PFAM: C-terminal regulatory domain of Threonine dehydratase; Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine ammonia-lyase, biosynthetic, long form; threonine dehydratase; COGs: COG0059 Ketol-acid reductoisomerase; InterPro IPR013116:IPR000506:IPR013023; KEGG: sli:Slin_5912 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal; SPTR: Ketol-acid reductoisomerase; TIGRFAM: Acetohydroxy acid isomeroreductase; threonine dehydratase complement(887142..888425) Runella slithyformis DSM 19594 10869269 YP_004654326.1 CDS Runsl_0754 NC_015703.1 888560 889603 R PFAM: Acetohydroxy acid isomeroreductase, catalytic domain; TIGRFAM: ketol-acid reductoisomerase; InterPro IPR013216; KEGG: aba:Acid345_3127 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Generic methyltransferase; ketol-acid reductoisomerase complement(888560..889603) Runella slithyformis DSM 19594 10869270 YP_004654327.1 CDS Runsl_0755 NC_015703.1 889641 890393 R PFAM: Methyltransferase domain; COGs: COG0440 Acetolactate synthase small (regulatory) subunit; InterPro IPR002912:IPR019455:IPR004789; KEGG: sli:Slin_5913 acetolactate synthase, small subunit; PFAM: Amino acid-binding ACT; Acetolactate synthase, small subunit, C-terminal; SPTR: Acetolactate synthase, small subunit; TIGRFAM: Acetolactate synthase, small subunit; type 11 methyltransferase complement(889641..890393) Runella slithyformis DSM 19594 10869271 YP_004654328.1 CDS Runsl_0756 NC_015703.1 890596 891132 R PFAM: ACT domain; Small subunit of acetolactate synthase; TIGRFAM: acetolactate synthase, small subunit; COGs: COG0028 Thiamine pyrophosphate-requiring protein; InterPro IPR012001:IPR012000:IPR011766:IPR012846; KEGG: dfe:Dfer_3681 acetolactate synthase, large subunit, biosynthetic type; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: Acetolactate synthase; SPTR: Acetolactate synthase; TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; acetolactate synthase small subunit complement(890596..891132) Runella slithyformis DSM 19594 10869272 YP_004654329.1 CDS Runsl_0757 NC_015703.1 891134 892930 R PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; COGs: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; HAMAP: Dihydroxy-acid dehydratase; InterPro IPR004404:IPR000581; KEGG: sli:Slin_5915 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; PRIAM: Dihydroxy-acid dehydratase; SPTR: Dihydroxy-acid dehydratase; TIGRFAM: Dihydroxy-acid dehydratase; acetolactate synthase large subunit complement(891134..892930) Runella slithyformis DSM 19594 10869273 YP_004654330.1 CDS Runsl_0758 NC_015703.1 892966 894651 R PFAM: Dehydratase; TIGRFAM: dihydroxy-acid dehydratase; COGs: COG4095 conserved hypothetical protein; InterPro IPR018169:IPR006603; KEGG: cte:CT0076 hypothetical protein; PFAM: MtN3/saliva-related transmembrane protein, conserved region; SMART: Cystinosin/ERS1p repeat; SPTR: uncharacterized protein; dihydroxy-acid dehydratase complement(892966..894651) Runella slithyformis DSM 19594 10869274 YP_004654331.1 CDS Runsl_0759 NC_015703.1 895112 895375 D PFAM: PQ loop repeat; COGs: COG0469 Pyruvate kinase; InterPro IPR015793:IPR015794:IPR001697; KEGG: dfe:Dfer_3378 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta; PRIAM: Pyruvate kinase; SPTR: Pyruvate kinase; TIGRFAM: Pyruvate kinase; hypothetical protein 895112..895375 Runella slithyformis DSM 19594 10869275 YP_004654332.1 CDS Runsl_0760 NC_015703.1 895447 896904 R PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase; COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; InterPro IPR011545:IPR001650:IPR014001:IPR005259; KEGG: dfe:Dfer_3377 primosomal protein N'; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Primosomal protein N'; TIGRFAM: Primosomal protein n; pyruvate kinase complement(895447..896904) Runella slithyformis DSM 19594 10869276 YP_004654333.1 CDS Runsl_0761 NC_015703.1 896934 899450 R PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: primosomal protein N'; KEGG: osp:Odosp_1433 hypothetical protein; SPTR: uncharacterized protein; primosomal protein N' complement(896934..899450) Runella slithyformis DSM 19594 10869277 YP_004654334.1 CDS Runsl_0762 NC_015703.1 899584 899991 D InterPro IPR008454; KEGG: sli:Slin_4061 hypothetical protein; PFAM: Collagen-binding surface protein Cna-like, B region; SPTR: uncharacterized protein; hypothetical protein 899584..899991 Runella slithyformis DSM 19594 10869278 YP_004654335.1 CDS Runsl_0763 NC_015703.1 900792 904910 D KEGG: dfe:Dfer_3376 hypothetical protein; SPTR: uncharacterized protein; Cna B domain-containing protein 900792..904910 Runella slithyformis DSM 19594 10869279 YP_004654336.1 CDS Runsl_0764 NC_015703.1 904929 905531 R PFAM: Aminotransferase class IV; COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR015890; KEGG: dfe:Dfer_3375 para-aminobenzoate synthase component I; PFAM: Chorismate binding, C-terminal; SPTR: Chorismate binding-like protein; hypothetical protein complement(904929..905531) Runella slithyformis DSM 19594 10869280 YP_004654337.1 CDS Runsl_0765 NC_015703.1 905509 906516 R PFAM: chorismate binding enzyme; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: mtt:Ftrac_3639 surface antigen (d15); PFAM: Bacterial surface antigen (D15); SPTR: Surface antigen (D15); chorismate-binding protein complement(905509..906516) Runella slithyformis DSM 19594 10869281 YP_004654338.1 CDS Runsl_0766 NC_015703.1 906579 907670 D PFAM: Surface antigen; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: rbi:RB2501_00611 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase; surface antigen (D15) 906579..907670 Runella slithyformis DSM 19594 10869282 YP_004654339.1 CDS Runsl_0767 NC_015703.1 907716 908414 D PFAM: Glycosyl transferase 2; family 2 glycosyl transferase 907716..908414 Runella slithyformis DSM 19594 10869283 YP_004654340.1 CDS Runsl_0768 NC_015703.1 908445 908648 D KEGG: dfe:Dfer_1441 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 908445..908648 Runella slithyformis DSM 19594 10869284 YP_004654341.1 CDS Runsl_0769 NC_015703.1 908906 909349 D InterPro IPR001387; KEGG: pmz:HMPREF0659_A6177 toxin-antitoxin system, antitoxin component, Xre family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: XRE family transcriptional regulator; hypothetical protein 908906..909349 Runella slithyformis DSM 19594 10869285 YP_004654342.1 CDS Runsl_0770 NC_015703.1 909355 909684 D PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein 909355..909684 Runella slithyformis DSM 19594 10869286 YP_004654343.1 CDS Runsl_0771 NC_015703.1 910205 910480 R COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division; HAMAP: rRNA small subunit methyltransferase G; InterPro IPR003682; KEGG: dfe:Dfer_3357 methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G; SPTR: Ribosomal RNA small subunit methyltransferase G; TIGRFAM: rRNA small subunit methyltransferase G; hypothetical protein complement(910205..910480) Runella slithyformis DSM 19594 10869288 YP_004654344.1 CDS Runsl_0772 NC_015703.1 910518 911141 R PFAM: rRNA small subunit methyltransferase G; TIGRFAM: 16S rRNA (guanine(527)-N(7))-methyltransferase GidB; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_3358 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; ribosomal RNA small subunit methyltransferase G complement(910518..911141) Runella slithyformis DSM 19594 10869289 YP_004654345.1 CDS Runsl_0773 NC_015703.1 911182 912354 R PFAM: Glycosyl transferase 2; COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; InterPro IPR004803:IPR002616; KEGG: dfe:Dfer_3359 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; PRIAM: tRNA-guanine transglycosylase; SPTR: Queuine tRNA-ribosyltransferase; TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; family 2 glycosyl transferase complement(911182..912354) Runella slithyformis DSM 19594 10869290 YP_004654346.1 CDS Runsl_0774 NC_015703.1 912468 913601 D PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: dfe:Dfer_3360 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; queuine tRNA-ribosyltransferase 912468..913601 Runella slithyformis DSM 19594 10869291 YP_004654347.1 CDS Runsl_0775 NC_015703.1 913598 915280 D PFAM: OmpA family; COGs: COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; InterProIPR001347:IPR001732:IPR014026:IPR014027:IPR 017476; KEGG: sli:Slin_4077 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; Sugar isomerase (SIS); UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; SPTR: Nucleotide sugar dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase; OmpA/MotB domain-containing protein 913598..915280 Runella slithyformis DSM 19594 10869292 YP_004654348.1 CDS Runsl_0776 NC_015703.1 915357 916667 D PFAM: UDP-glucose/GDP-mannose dehydrogenase, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase, central domain; UDP-glucose/GDP-mannose dehydrogenase, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase; COGs: COG0562 UDP-galactopyranose mutase; InterPro IPR006076:IPR015899:IPR004379; KEGG: dfe:Dfer_3361 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase, C-terminal; FAD dependent oxidoreductase; PRIAM: UDP-galactopyranose mutase; SPTR: UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; nucleotide sugar dehydrogenase 915357..916667 Runella slithyformis DSM 19594 10869293 YP_004654349.1 CDS Runsl_0777 NC_015703.1 916761 917861 D PFAM: UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; UDP-galactopyranose mutase 916761..917861 Runella slithyformis DSM 19594 10869294 YP_004654350.1 CDS Runsl_0778 NC_015703.1 917944 918261 R COGs: COG0247 Fe-S oxidoreductase; KEGG: dfe:Dfer_4017 oxidoreductase, Fe-S subunit; SPTR: Oxidoreductase, Fe-S subunit; hypothetical protein complement(917944..918261) Runella slithyformis DSM 19594 10869295 YP_004654351.1 CDS Runsl_0779 NC_015703.1 918254 919594 R COGs: COG1239 Mg-chelatase subunit ChlI; KEGG: sli:Slin_0326 Mg-chelatase subunit ChlI-like protein; SPTR: Mg-chelatase subunit ChlI-like protein; oxidoreductase, Fe-S subunit complement(918254..919594) Runella slithyformis DSM 19594 10869296 YP_004654352.1 CDS Runsl_0780 NC_015703.1 919798 921315 D KEGG: sli:Slin_0645 hypothetical protein; SPTR: uncharacterized protein; Mg-chelatase subunit ChlI-like protein 919798..921315 Runella slithyformis DSM 19594 10869297 YP_004654353.1 CDS Runsl_0781 NC_015703.1 921374 922384 R COGs: COG5010 Flp pilus assembly protein TadD contains TPR repeats; InterPro IPR001440:IPR013105:IPR019734; KEGG: sli:Slin_1991 hypothetical protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(921374..922384) Runella slithyformis DSM 19594 10869298 YP_004654354.1 CDS Runsl_0782 NC_015703.1 922662 923720 D PFAM: Tetratricopeptide repeat; InterPro IPR000620; KEGG: cpi:Cpin_1584 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: uncharacterized protein; hypothetical protein 922662..923720 Runella slithyformis DSM 19594 10869299 YP_004654355.1 CDS Runsl_0783 NC_015703.1 923763 924623 D PFAM: EamA-like transporter family; KEGG: sli:Slin_6136 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 923763..924623 Runella slithyformis DSM 19594 10869300 YP_004654356.1 CDS Runsl_0784 NC_015703.1 924637 925197 R COGs: COG3002 conserved hypothetical protein; HAMAP: UPF0753 protein; InterPro IPR018752; KEGG: sli:Slin_1124 hypothetical protein; PFAM: Protein of unknown function DUF2309; SPTR: UPF0753 protein Slin_1124; hypothetical protein complement(924637..925197) Runella slithyformis DSM 19594 10869301 YP_004654357.1 CDS Runsl_0785 NC_015703.1 925650 928145 D PFAM: Uncharacterized protein conserved in bacteria (DUF2309); COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR001516:IPR001750; KEGG: sli:Slin_1125 NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH dehydrogenase (Quinone); hypothetical protein 925650..928145 Runella slithyformis DSM 19594 10869302 YP_004654358.1 CDS Runsl_0786 NC_015703.1 928155 930023 D PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; COGs: COG3568 Metal-dependent hydrolase; InterPro IPR005135; KEGG: rba:RB8407 hypothetical protein; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; NADH dehydrogenase (quinone) 928155..930023 Runella slithyformis DSM 19594 10869303 YP_004654359.1 CDS Runsl_0787 NC_015703.1 930217 931005 D PFAM: Endonuclease/Exonuclease/phosphatase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: sli:Slin_1480 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; hypothetical protein 930217..931005 Runella slithyformis DSM 19594 10869304 YP_004654360.1 CDS Runsl_0788 NC_015703.1 931002 931865 D PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain; COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220; KEGG: fbc:FB2170_10606 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase; PRIAM: Dihydrodipicolinate synthase; SPTR: Dihydrodipicolinate synthase; AraC family transcriptional regulator 931002..931865 Runella slithyformis DSM 19594 10869305 YP_004654361.1 CDS Runsl_0789 NC_015703.1 932035 932940 D PFAM: Dihydrodipicolinate synthetase; manually curated; dihydrodipicolinate synthase 932035..932940 Runella slithyformis DSM 19594 10869306 YP_004654362.1 CDS Runsl_0791 NC_015703.1 933319 934197 D PFAM: Zeta toxin; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: pbs:Plabr_1258 sulfatase; PFAM: Sulfatase; SPTR: Choline sulfatase; polynucleotide 5'-hydroxyl-kinase 933319..934197 Runella slithyformis DSM 19594 10869308 YP_004654363.1 CDS Runsl_0792 NC_015703.1 934322 935761 D PFAM: Sulfatase; InterPro IPR005181; KEGG: sli:Slin_2555 hypothetical protein; PFAM: Protein of unknown function DUF303, acetylesterase SPTR: uncharacterized protein; sulfatase 934322..935761 Runella slithyformis DSM 19594 10869309 YP_004654364.1 CDS Runsl_0793 NC_015703.1 935777 936577 D PFAM: Domain of unknown function (DUF303); hypothetical protein 935777..936577 Runella slithyformis DSM 19594 10869310 YP_004654365.1 CDS Runsl_0794 NC_015703.1 936577 936717 D InterPro IPR006311; KEGG: sli:Slin_1890 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 936577..936717 Runella slithyformis DSM 19594 10869311 YP_004654366.1 CDS Runsl_0795 NC_015703.1 936771 937286 D COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076; KEGG: dfe:Dfer_4714 glucose-methanol-choline oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; hypothetical protein 936771..937286 Runella slithyformis DSM 19594 10869312 YP_004654367.1 CDS Runsl_0796 NC_015703.1 937389 939098 D PFAM: GMC oxidoreductase; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sli:Slin_3337 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; FAD dependent oxidoreductase 937389..939098 Runella slithyformis DSM 19594 10869313 YP_004654368.1 CDS Runsl_0797 NC_015703.1 939206 940063 D PFAM: Xylose isomerase-like TIM barrel; Prodigal; manually curated; xylose isomerase domain-containing protein 939206..940063 Runella slithyformis DSM 19594 10869314 YP_004654369.1 CDS Runsl_0799 NC_015703.1 940585 940755 R COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: mmp:MMP0791 TetR family transcriptional regulator member; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR Family Member; hypothetical protein complement(940585..940755) Runella slithyformis DSM 19594 10869316 YP_004654370.1 CDS Runsl_0800 NC_015703.1 940921 941484 D PFAM: Bacterial regulatory proteins, tetR family; KEGG: chu:CHU_3332 hypothetical protein; SPTR: uncharacterized protein; TetR family transcriptional regulator 940921..941484 Runella slithyformis DSM 19594 10869317 YP_004654371.1 CDS Runsl_0801 NC_015703.1 941497 942162 D COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; InterPro IPR001041:IPR002888; KEGG: bmj:BMULJ_01550 isoquinoline 1-oxidoreductase subunit alpha; PFAM: [2Fe-2S]-binding; Ferredoxin; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: Aldehyde dehydrogenase subunit III; hypothetical protein 941497..942162 Runella slithyformis DSM 19594 10869318 YP_004654372.1 CDS Runsl_0802 NC_015703.1 942227 942700 D PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR008274:IPR006311; KEGG: rbi:RB2501_13024 aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL-like protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: Twin-arginine translocation pathway signal; isoquinoline 1-oxidoreductase 942227..942700 Runella slithyformis DSM 19594 10869319 YP_004654373.1 CDS Runsl_0803 NC_015703.1 942706 944880 D PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; InterPro IPR019288; KEGG: dfe:Dfer_3714 hypothetical protein; PFAM: 3'-5' exonuclease, PolB-like; SPTR: uncharacterized protein; isoquinoline 1-oxidoreductase 942706..944880 Runella slithyformis DSM 19594 10869320 YP_004654374.1 CDS Runsl_0804 NC_015703.1 944989 945768 R PFAM: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; COGs: COG0242 N-formylmethionyl-tRNA deformylase; HAMAP: Formylmethionine deformylase; InterPro IPR000181; KEGG: dfe:Dfer_4052 peptide deformylase; PFAM: Formylmethionine deformylase; PRIAM: Peptide deformylase; SPTR: Peptide deformylase; TIGRFAM: Formylmethionine deformylase; 3'-5' exonuclease complement(944989..945768) Runella slithyformis DSM 19594 10869321 YP_004654375.1 CDS Runsl_0805 NC_015703.1 945803 946375 R PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase; COGs: COG0816 endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); HAMAP: Holliday junction resolvase; InterPro IPR005227:IPR006641; KEGG: dfe:Dfer_4051 Holliday junction resolvase YqgF; PFAM: Resolvase, holliday junction-type, YqgF-like; SMART: Resolvase, RNase H-like fold; SPTR: Holliday junction resolvase; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; peptide deformylase complement(945803..946375) Runella slithyformis DSM 19594 10869322 YP_004654376.1 CDS Runsl_0806 NC_015703.1 946429 946842 R PFAM: Uncharacterised protein family (UPF0081); TIGRFAM: RNAse H-fold protein YqgF; COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254:IPR001478:IPR011782; KEGG: dfe:Dfer_3918 protease Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF; SPTR: Protease Do; TIGRFAM: Peptidase S1C, Do; Holliday junction resolvase complement(946429..946842) Runella slithyformis DSM 19594 10869323 YP_004654377.1 CDS Runsl_0807 NC_015703.1 947233 948756 D PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family; InterPro IPR006153; KEGG: lby:Lbys_1407 sodium/proton antiporter, cpa1 family; PFAM: Cation/H+ exchanger; SPTR: Na(+)/H(+) exchanger family protein; protease Do 947233..948756 Runella slithyformis DSM 19594 10869324 YP_004654378.1 CDS Runsl_0808 NC_015703.1 948861 950033 D PFAM: Sodium/hydrogen exchanger family; COGs: COG0673 dehydrogenase and related protein; InterPro IPR013149:IPR000683; KEGG: pdi:BDI_1580 zinc-binding dehydrogenase; PFAM: Oxidoreductase, N-terminal; Alcohol dehydrogenase, zinc-binding; SPTR: Oxidoreductase; sodium/hydrogen exchanger 948861..950033 Runella slithyformis DSM 19594 10869325 YP_004654379.1 CDS Runsl_0809 NC_015703.1 950125 952263 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; Zinc-binding dehydrogenase; KEGG: sli:Slin_0251 hypothetical protein; SPTR: uncharacterized protein; oxidoreductase domain-containing protein complement(950125..952263) Runella slithyformis DSM 19594 10869326 YP_004654380.1 CDS Runsl_0810 NC_015703.1 952451 952675 R PFAM: Protein of unknown function (DUF2905); InterPro IPR004740; KEGG: sli:Slin_0520 nucleoside:H symporter; PFAM: Nucleoside:H+ symporter; SPTR: Nucleoside:H symporter; hypothetical protein complement(952451..952675) Runella slithyformis DSM 19594 10869327 YP_004654381.1 CDS Runsl_0811 NC_015703.1 952760 953956 D PFAM: Nucleoside H+ symporter; TIGRFAM: nucleoside transporter; COGs: COG0708 Exonuclease III; InterPro IPR005135:IPR000097:IPR004808; KEGG: dfe:Dfer_2986 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: Exodeoxyribonuclease III; SPTR: Exodeoxyribonuclease III Xth; TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; nucleoside:H symporter 952760..953956 Runella slithyformis DSM 19594 10869328 YP_004654382.1 CDS Runsl_0812 NC_015703.1 954073 954846 D PFAM: Endonuclease/Exonuclease/phosphatase; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth); exodeoxyribonuclease III 954073..954846 Runella slithyformis DSM 19594 10869329 YP_004654383.1 CDS Runsl_0813 NC_015703.1 954780 954944 R InterPro IPR001440:IPR013105:IPR019734; KEGG: dfe:Dfer_3772 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; hypothetical protein complement(954780..954944) Runella slithyformis DSM 19594 10869330 YP_004654384.1 CDS Runsl_0814 NC_015703.1 955023 956738 D PFAM: Tetratricopeptide repeat; KEGG: sli:Slin_4397 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 955023..956738 Runella slithyformis DSM 19594 10869331 YP_004654385.1 CDS Runsl_0815 NC_015703.1 956766 957728 D COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR016047; KEGG: sli:Slin_4398 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23; hypothetical protein 956766..957728 Runella slithyformis DSM 19594 10869332 YP_004654386.1 CDS Runsl_0816 NC_015703.1 957761 959212 D PFAM: Peptidase M23; COGs: COG0413 Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; InterPro IPR003700; KEGG: dfe:Dfer_3775 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; PRIAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; SPTR: 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: Ketopantoate hydroxymethyltransferase; peptidase M23 957761..959212 Runella slithyformis DSM 19594 10869333 YP_004654389.1 CDS Runsl_0819 NC_015703.1 961117 961422 D KEGG: dfe:Dfer_3812 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 961117..961422 Runella slithyformis DSM 19594 10869336 YP_004654390.1 CDS Runsl_0820 NC_015703.1 961417 961596 R COGs: COG0323 DNA mismatch repair enzyme (predicted ATPase); HAMAP: DNA mismatch repair protein mutL; InterPro IPR003594:IPR013507:IPR014790:IPR014763; KEGG: dfe:Dfer_3811 DNA mismatch repair protein MutL; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATP-binding region, ATPase-like; SPTR: DNA mismatch repair protein mutL; TIGRFAM: DNA mismatch repair protein, N-terminal; hypothetical protein complement(961417..961596) Runella slithyformis DSM 19594 10869337 YP_004654391.1 CDS Runsl_0821 NC_015703.1 961890 963779 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; MutL C terminal dimerisation domain; DNA mismatch repair protein, C-terminal domain; TIGRFAM: DNA mismatch repair protein MutL; InterPro IPR002610; KEGG: dfe:Dfer_3810 rhomboid family protein; PFAM: Peptidase S54, rhomboid; SPTR: Rhomboid family protein; DNA mismatch repair protein mutL 961890..963779 Runella slithyformis DSM 19594 10869338 YP_004654392.1 CDS Runsl_0822 NC_015703.1 963886 964665 D PFAM: Rhomboid family; COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: dfe:Dfer_3809 rhomboid family protein; PFAM: Peptidase S54, rhomboid; SPTR: Rhomboid family protein; rhomboid family protein 963886..964665 Runella slithyformis DSM 19594 10869339 YP_004654393.1 CDS Runsl_0823 NC_015703.1 964780 965697 D PFAM: Rhomboid family; COGs: COG1154 Deoxyxylulose-5-phosphate synthase; HAMAP: Deoxyxylulose-5-phosphate synthase; InterPro IPR005477:IPR005475:IPR005476; KEGG: sli:Slin_5566 deoxyxylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase; SPTR: 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: Deoxyxylulose-5-phosphate synthase; rhomboid family protein 964780..965697 Runella slithyformis DSM 19594 10869340 YP_004654394.1 CDS Runsl_0824 NC_015703.1 965815 967752 D PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase; COGs: COG1301 Na+/H+-dicarboxylate symporter; InterPro IPR001991; KEGG: sli:Slin_1737 sodium:dicarboxylate symporter; PFAM: Sodium:dicarboxylate symporter; SPTR: Sodium:dicarboxylate symporter; 1-deoxy-D-xylulose-5-phosphate synthase 965815..967752 Runella slithyformis DSM 19594 10869341 YP_004654395.1 CDS Runsl_0825 NC_015703.1 968016 969245 D PFAM: Sodium:dicarboxylate symporter family; InterPro IPR018713; KEGG: sli:Slin_2259 hypothetical protein; PFAM: Protein of unknown function DUF2236; SPTR: uncharacterized protein; sodium:dicarboxylate symporter 968016..969245 Runella slithyformis DSM 19594 10869342 YP_004654396.1 CDS Runsl_0826 NC_015703.1 969324 970220 R PFAM: Uncharacterized protein conserved in bacteria (DUF2236); InterPro IPR000835; KEGG: cpi:Cpin_4956 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; hypothetical protein complement(969324..970220) Runella slithyformis DSM 19594 10869343 YP_004654397.1 CDS Runsl_0827 NC_015703.1 970257 970901 R InterPro IPR012910:IPR000531; KEGG: mtt:Ftrac_1466 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; regulatory protein MarR complement(970257..970901) Runella slithyformis DSM 19594 10869344 YP_004654398.1 CDS Runsl_0828 NC_015703.1 971009 973471 D PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; InterPro IPR012307:IPR006311; KEGG: dfe:Dfer_0469 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; TonB-dependent receptor 971009..973471 Runella slithyformis DSM 19594 10869345 YP_004654399.1 CDS Runsl_0829 NC_015703.1 973594 974529 R PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; KEGG: mpn:MPN138 hypothetical protein; SPTR: UPF0134 protein MPN_138; xylose isomerase domain-containing protein complement(973594..974529) Runella slithyformis DSM 19594 10869346 YP_004654400.1 CDS Runsl_0830 NC_015703.1 974558 974902 R COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR011659:IPR001375; KEGG: sli:Slin_5739 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein; hypothetical protein complement(974558..974902) Runella slithyformis DSM 19594 10869347 YP_004654401.1 CDS Runsl_0831 NC_015703.1 974958 977177 R PFAM: Prolyl oligopeptidase; WD40-like Beta Propeller Repeat; COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: sli:Slin_2560 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PRIAM: N-carbamoylputrescine amidase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; peptidase S9 prolyl oligopeptidase active site domain-containing protein complement(974958..977177) Runella slithyformis DSM 19594 10869348 YP_004654402.1 CDS Runsl_0832 NC_015703.1 977332 978201 D PFAM: Carbon-nitrogen hydrolase; TIGRFAM: N-carbamoylputrescine amidase; COGs: COG0139 Phosphoribosyl-AMP cyclohydrolase; HAMAP: Histidine biosynthesis bifunctional protein hisIE; InterPro IPR002496:IPR008179; KEGG: sli:Slin_5481 phosphoribosyl-ATP diphosphatase; PFAM: Phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphohydrolase; PRIAM: Phosphoribosyl-AMP cyclohydrolase., Phosphoribosyl-ATP diphosphatase; SPTR: Phosphoribosyl-ATP diphosphatase; TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; N-carbamoylputrescine amidase 977332..978201 Runella slithyformis DSM 19594 10869349 YP_004654403.1 CDS Runsl_0833 NC_015703.1 978287 978886 R PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; Phosphoribosyl-AMP cyclohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR002078:IPR003593; KEGG: sli:Slin_3615 two component, sigma54 specific, fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; SPTR: two component, sigma54 specific, transcriptional regulator, Fis family; histidine biosynthesis bifunctional protein hisIE complement(978287..978886) Runella slithyformis DSM 19594 10869350 YP_004654404.1 CDS Runsl_0834 NC_015703.1 978989 980152 R PFAM: Response regulator receiver domain; Sigma-54 interaction domain; two component, sigma-54 specific, transcriptional regulator complement(978989..980152) Runella slithyformis DSM 19594 10869351 YP_004654405.1 CDS Runsl_0835 NC_015703.1 980167 980289 R COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130; KEGG: sli:Slin_4816 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; SPTR: Peptidyl-prolyl cis-trans isomerase; hypothetical protein complement(980167..980289) Runella slithyformis DSM 19594 10869352 YP_004654406.1 CDS Runsl_0836 NC_015703.1 980356 981054 R PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; COGs: COG1078 HD superfamily phosphohydrolase; InterPro IPR006674:IPR003607; KEGG: sli:Slin_6492 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region; SPTR: Metal dependent phosphohydrolase; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(980356..981054) Runella slithyformis DSM 19594 10869353 YP_004654407.1 CDS Runsl_0837 NC_015703.1 981125 982357 D PFAM: HD domain; COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; InterPro IPR007691:IPR020573:IPR001451; KEGG: sli:Slin_6493 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat; SPTR: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; metal dependent phosphohydrolase 981125..982357 Runella slithyformis DSM 19594 10869354 YP_004654408.1 CDS Runsl_0838 NC_015703.1 982368 983402 D PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Bacterial transferase hexapeptide (three repeats); TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; COGs: COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; HAMAP: (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; UDP-3-O-acyl N-acetylglucosamine deacetylase; InterPro IPR004463:IPR013114:IPR010084; KEGG: sli:Slin_6494 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; SPTR: Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase FabZ; TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; UDP-3-O-acyl N-acetylglucosamine deacetylase; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 982368..983402 Runella slithyformis DSM 19594 10869355 YP_004654409.1 CDS Runsl_0839 NC_015703.1 983408 984802 D PFAM: FabA-like domain; UDP-3-O-acyl N-acetylglycosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ; COGs: COG1043 Acyl-(acyl carrier protein); InterPro IPR001451:IPR010137; KEGG: sli:Slin_6495 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosa MinE O-acyltransferase; PRIAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgluc osamineO-acyltransferase; SPTR: Acyl-(Acyl-carrier-protein)--UDP-N-acetylglucosa mine O-acyltransferase; TIGRFAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgl ucosamineO-acyltransferase; (3R)-hydroxymyristoyl-ACP dehydratase 983408..984802 Runella slithyformis DSM 19594 10869356 YP_004654410.1 CDS Runsl_0840 NC_015703.1 984899 985702 D PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: ote:Oter_1907 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase 984899..985702 Runella slithyformis DSM 19594 10869357 YP_004654411.1 CDS Runsl_0841 NC_015703.1 986483 987286 D PFAM: Polysaccharide deacetylase; InterPro IPR003088:IPR013428:IPR013427; KEGG: pbs:Plabr_3239 membrane-bound dehydrogenase domain protein; PFAM: Cytochrome c, class I; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; haem-binding region; polysaccharide deacetylase 986483..987286 Runella slithyformis DSM 19594 10869358 YP_004654412.1 CDS Runsl_0842 NC_015703.1 987459 990491 D PFAM: Cytochrome c; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type; COGs: COG0031 Cysteine synthase; InterPro IPR001926:IPR005858:IPR005856; KEGG: sli:Slin_5857 cysteine synthase B; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Cysteine synthase; SPTR: Cysteine synthase; TIGRFAM: Cysteine synthase B; Cysteine synthase K/M; membrane-bound dehydrogenase domain-containing protein 987459..990491 Runella slithyformis DSM 19594 10869359 YP_004654413.1 CDS Runsl_0843 NC_015703.1 990583 991455 R PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthases; cysteine synthase B; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; KEGG: sli:Slin_5446 polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein; cysteine synthase B complement(990583..991455) Runella slithyformis DSM 19594 10869360 YP_004654414.1 CDS Runsl_0844 NC_015703.1 991654 993177 D InterPro IPR020018; KEGG: sli:Slin_5969 gliding motility-associated lipoprotein GldH; SPTR: Gliding motility-associated lipoprotein GldH; TIGRFAM: Gliding motility-associated lipoprotein, GldH; polysaccharide biosynthesis protein 991654..993177 Runella slithyformis DSM 19594 10869361 YP_004654415.1 CDS Runsl_0845 NC_015703.1 993201 993710 D TIGRFAM: gliding motility-associated lipoprotein GldH; COGs: COG2802 Uncharacterized protein similar to the N-terminal domain of Lon protease; InterPro IPR003111; KEGG: sli:Slin_5613 peptidase S16; PFAM: Peptidase S16, lon N-terminal; SMART: Peptidase S16, lon N-terminal; SPTR: Peptidase S16 lon domain protein; gliding motility-associated lipoprotein GldH 993201..993710 Runella slithyformis DSM 19594 10869362 YP_004654416.1 CDS Runsl_0846 NC_015703.1 993767 994396 D PFAM: ATP-dependent protease La (LON) domain; COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125; KEGG: zpr:ZPR_1903 guanine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; PRIAM: Guanine deaminase; SPTR: Guanine deaminase; peptidase S16 lon domain-containing protein 993767..994396 Runella slithyformis DSM 19594 10869363 YP_004654417.1 CDS Runsl_0847 NC_015703.1 994580 995053 R PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: aba:Acid345_4345 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; PRIAM: Sarcosine oxidase; SPTR: FAD dependent oxidoreductase; guanine deaminase complement(994580..995053) Runella slithyformis DSM 19594 10869364 YP_004654418.1 CDS Runsl_0848 NC_015703.1 995060 996253 R PFAM: FAD dependent oxidoreductase; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: cts:Ctha_2148 group 1 glycosyl transferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyltransferase; sarcosine oxidase complement(995060..996253) Runella slithyformis DSM 19594 10869365 YP_004654419.1 CDS Runsl_0849 NC_015703.1 996339 997568 D PFAM: Glycosyl transferases group 1; COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: sli:Slin_0708 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; group 1 glycosyl transferase 996339..997568 Runella slithyformis DSM 19594 10869366 YP_004654420.1 CDS Runsl_0850 NC_015703.1 997612 998061 D PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_6620 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; PRIAM: Glucomannan 4-beta-mannosyltransferase; SPTR: Glycosyl transferase 2; phenylacetic acid degradation-like protein 997612..998061 Runella slithyformis DSM 19594 10869367 YP_004654421.1 CDS Runsl_0851 NC_015703.1 998099 999562 D PFAM: Glycosyl transferase 2; COGs: COG0227 Ribosomal protein L28; HAMAP: Ribosomal protein L28; InterPro IPR001383; KEGG: sli:Slin_6556 ribosomal protein L28; PFAM: Ribosomal protein L28; SPTR: 50S ribosomal protein L28; TIGRFAM: Ribosomal protein L28; glucomannan 4-beta-mannosyltransferase 998099..999562 Runella slithyformis DSM 19594 10869368 YP_004654422.1 CDS Runsl_0852 NC_015703.1 999668 999892 R PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: dfe:Dfer_5645 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; SPTR: Two component transcriptional regulator, LytTR family; 50S ribosomal protein L28 complement(999668..999892) Runella slithyformis DSM 19594 10869369 YP_004654423.1 CDS Runsl_0853 NC_015703.1 1000012 1000395 R PFAM: LytTr DNA-binding domain; COGs: COG2255 Holliday junction resolvasome helicase subunit; HAMAP: DNA helicase, Holliday junction RuvB type; InterProIPR004605:IPR008824:IPR003959:IPR008823:IPR 003593; KEGG: dfe:Dfer_3690 Holliday junction DNA helicase RuvB; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: Holliday junction ATP-dependent DNA helicase ruvB; TIGRFAM: DNA helicase, Holliday junction RuvB type; response regulator receiver protein complement(1000012..1000395) Runella slithyformis DSM 19594 10869370 YP_004654424.1 CDS Runsl_0854 NC_015703.1 1000671 1001702 R PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit; KEGG: ppd:Ppro_2108 hypothetical protein; SPTR: uncharacterized protein; manually curated; Holliday junction DNA helicase subunit RuvB complement(1000671..1001702) Runella slithyformis DSM 19594 10869371 YP_004654425.1 CDS Runsl_0856 NC_015703.1 1002479 1006120 R PFAM: PKD domain; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sli:Slin_3491 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; PKD domain-containing protein complement(1002479..1006120) Runella slithyformis DSM 19594 10869373 YP_004654426.1 CDS Runsl_0857 NC_015703.1 1006337 1007185 R PFAM: Xylose isomerase-like TIM barrel; InterPro IPR011701; KEGG: sli:Slin_2840 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; xylose isomerase domain-containing protein complement(1006337..1007185) Runella slithyformis DSM 19594 10869374 YP_004654427.1 CDS Runsl_0858 NC_015703.1 1007289 1008518 R PFAM: Major Facilitator Superfamily; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: sli:Slin_2839 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; major facilitator superfamily protein complement(1007289..1008518) Runella slithyformis DSM 19594 10869375 YP_004654428.1 CDS Runsl_0859 NC_015703.1 1008878 1010179 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_2838 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; oxidoreductase domain-containing protein complement(1008878..1010179) Runella slithyformis DSM 19594 10869376 YP_004654429.1 CDS Runsl_0860 NC_015703.1 1010583 1011398 R PFAM: short chain dehydrogenase; COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155; KEGG: sli:Slin_2837 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; SPTR: NADH:flavin oxidoreductase/NADH oxidase; 3-oxoacyl-ACP reductase complement(1010583..1011398) Runella slithyformis DSM 19594 10869377 YP_004654430.1 CDS Runsl_0861 NC_015703.1 1011409 1012854 R PFAM: NADH:flavin oxidoreductase / NADH oxidase; InterPro IPR010905; KEGG: sli:Slin_2836 hypothetical protein; PFAM: Glycosyl hydrolase, family 88; SPTR: uncharacterized protein; NADH:flavin oxidoreductase complement(1011409..1012854) Runella slithyformis DSM 19594 10869378 YP_004654431.1 CDS Runsl_0862 NC_015703.1 1012977 1014374 R PFAM: Glycosyl Hydrolase 88; COGs: COG2610 H+/gluconate symporter and related permease; InterPro IPR003474; KEGG: cdf:CD2812 gluconate permease; PFAM: Gluconate transporter; SPTR: gluconate permease; TIGRFAM: Gluconate transporter; glycoside hydrolase complement(1012977..1014374) Runella slithyformis DSM 19594 10869379 YP_004654432.1 CDS Runsl_0863 NC_015703.1 1014536 1015864 R PFAM: GntP family permease; TIGRFAM: gluconate transporter; KEGG: dfe:Dfer_2216 hypothetical protein; SPTR: uncharacterized protein; gluconate transporter complement(1014536..1015864) Runella slithyformis DSM 19594 10869380 YP_004654433.1 CDS Runsl_0864 NC_015703.1 1015951 1017183 R PFAM: Polysaccharide pyruvyl transferase; COGs: COG2327 conserved hypothetical protein; KEGG: phe:Phep_2607 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1015951..1017183) Runella slithyformis DSM 19594 10869381 YP_004654434.1 CDS Runsl_0865 NC_015703.1 1017234 1018568 R PFAM: Polysaccharide pyruvyl transferase; InterPro IPR012944; KEGG: dfe:Dfer_2218 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; hypothetical protein complement(1017234..1018568) Runella slithyformis DSM 19594 10869382 YP_004654435.1 CDS Runsl_0866 NC_015703.1 1018656 1020353 R PFAM: SusD family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_2219 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; RagB/SusD domain-containing protein complement(1018656..1020353) Runella slithyformis DSM 19594 10869383 YP_004654436.1 CDS Runsl_0867 NC_015703.1 1020366 1023740 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: sli:Slin_6285 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; TonB-dependent receptor plug complement(1020366..1023740) Runella slithyformis DSM 19594 10869384 YP_004654437.1 CDS Runsl_0868 NC_015703.1 1023759 1024754 R PFAM: FecR protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284:IPR014327; KEGG: sli:Slin_6284 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; anti-FecI sigma factor FecR complement(1023759..1024754) Runella slithyformis DSM 19594 10869385 YP_004654438.1 CDS Runsl_0869 NC_015703.1 1024815 1025498 R PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: pbs:Plabr_3889 lipase/esterase; SPTR: Probable lipase/esterase; ECF subfamily RNA polymerase sigma-24 subunit complement(1024815..1025498) Runella slithyformis DSM 19594 10869386 YP_004654439.1 CDS Runsl_0870 NC_015703.1 1025738 1026610 D PFAM: alpha/beta hydrolase fold; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR013428; KEGG: dfe:Dfer_4984 membrane-bound dehydrogenase domain protein; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; lipase/esterase 1025738..1026610 Runella slithyformis DSM 19594 10869387 YP_004654440.1 CDS Runsl_0871 NC_015703.1 1026883 1030035 R PFAM: Cytochrome c; Membrane bound L-sorbosone dehydrogenase; TIGRFAM: membrane-bound dehydrogenase domain; KEGG: sli:Slin_1261 hypothetical protein; SPTR: uncharacterized protein; membrane-bound dehydrogenase domain-containing protein complement(1026883..1030035) Runella slithyformis DSM 19594 10869388 YP_004654441.1 CDS Runsl_0872 NC_015703.1 1030085 1030984 R PFAM: Trehalose utilisation; InterPro IPR012944; KEGG: dfe:Dfer_4718 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; hypothetical protein complement(1030085..1030984) Runella slithyformis DSM 19594 10869389 YP_004654442.1 CDS Runsl_0873 NC_015703.1 1031173 1032678 R PFAM: SusD family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR011662:IPR012910:IPR000531; KEGG: dfe:Dfer_4717 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; RagB/SusD domain-containing protein complement(1031173..1032678) Runella slithyformis DSM 19594 10869390 YP_004654443.1 CDS Runsl_0874 NC_015703.1 1032708 1036139 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: sli:Slin_6566 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; TonB-dependent receptor plug complement(1032708..1036139) Runella slithyformis DSM 19594 10869391 YP_004654444.1 CDS Runsl_0875 NC_015703.1 1036396 1037472 R PFAM: FecR protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_6565 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; anti-FecI sigma factor FecR complement(1036396..1037472) Runella slithyformis DSM 19594 10869392 YP_004654445.1 CDS Runsl_0876 NC_015703.1 1037528 1038118 R PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: dfe:Dfer_0191 hypothetical protein; SPTR: uncharacterized protein; ECF subfamily RNA polymerase sigma-24 subunit complement(1037528..1038118) Runella slithyformis DSM 19594 10869393 YP_004654446.1 CDS Runsl_0877 NC_015703.1 1038483 1039223 D hypothetical protein 1038483..1039223 Runella slithyformis DSM 19594 10869394 YP_004654447.1 CDS Runsl_0878 NC_015703.1 1039253 1039795 R KEGG: dfe:Dfer_4617 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1039253..1039795) Runella slithyformis DSM 19594 10869395 YP_004654448.1 CDS Runsl_0879 NC_015703.1 1039920 1040954 D hypothetical protein 1039920..1040954 Runella slithyformis DSM 19594 10869396 YP_004654449.1 CDS Runsl_0880 NC_015703.1 1041034 1041531 R COGs: COG3622 Hydroxypyruvate isomerase; InterPro IPR012307:IPR006311; KEGG: sli:Slin_3461 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; hypothetical protein complement(1041034..1041531) Runella slithyformis DSM 19594 10869397 YP_004654450.1 CDS Runsl_0881 NC_015703.1 1042018 1042905 R PFAM: Xylose isomerase-like TIM barrel; KEGG: sli:Slin_3971 hypothetical protein; SPTR: uncharacterized protein; xylose isomerase domain-containing protein complement(1042018..1042905) Runella slithyformis DSM 19594 10869398 YP_004654451.1 CDS Runsl_0882 NC_015703.1 1043231 1044946 R InterPro IPR001647; KEGG: dfe:Dfer_2561 transcriptional regulator, TetR family; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; hypothetical protein complement(1043231..1044946) Runella slithyformis DSM 19594 10869399 YP_004654452.1 CDS Runsl_0883 NC_015703.1 1045268 1045966 D PFAM: Bacterial regulatory proteins, tetR family; COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839; KEGG: dfe:Dfer_2557 glycine C-acetyltransferase; PFAM: Aminotransferase, class I/II; PRIAM: Glycine C-acetyltransferase; SPTR: Glycine C-acetyltransferase; TetR family transcriptional regulator 1045268..1045966 Runella slithyformis DSM 19594 10869400 YP_004654453.1 CDS Runsl_0884 NC_015703.1 1046121 1047326 D PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase; KEGG: dfe:Dfer_2556 hypothetical protein; SPTR: uncharacterized protein; glycine C-acetyltransferase 1046121..1047326 Runella slithyformis DSM 19594 10869401 YP_004654454.1 CDS Runsl_0885 NC_015703.1 1047323 1048444 D COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_2555 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; hypothetical protein 1047323..1048444 Runella slithyformis DSM 19594 10869402 YP_004654455.1 CDS Runsl_0886 NC_015703.1 1048441 1049436 D PFAM: NAD dependent epimerase/dehydratase; KEGG: dfe:Dfer_2554 hypothetical protein; SPTR: uncharacterized protein; NAD-dependent epimerase/dehydratase 1048441..1049436 Runella slithyformis DSM 19594 10869403 YP_004654456.1 CDS Runsl_0887 NC_015703.1 1049507 1052101 D COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); KEGG: dfe:Dfer_2553 nucleoside-diphosphate-sugar pyrophosphorylase; SPTR: nucleoside-diphosphate-sugar pyrophosphorylase; hypothetical protein 1049507..1052101 Runella slithyformis DSM 19594 10869404 YP_004654457.1 CDS Runsl_0888 NC_015703.1 1052236 1052970 D PFAM: Nucleotidyl transferase; KEGG: dfe:Dfer_2552 hypothetical protein; SPTR: uncharacterized protein; nucleoside-diphosphate-sugar pyrophosphorylase 1052236..1052970 Runella slithyformis DSM 19594 10869405 YP_004654458.1 CDS Runsl_0889 NC_015703.1 1052970 1053839 D COGs: COG0558 Phosphatidylglycerophosphate synthase; InterPro IPR000462; KEGG: dfe:Dfer_2551 CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-alcohol phosphatidyltransferase; hypothetical protein 1052970..1053839 Runella slithyformis DSM 19594 10869406 YP_004654459.1 CDS Runsl_0890 NC_015703.1 1053839 1054786 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dfe:Dfer_2550 hypothetical protein; SPTR: uncharacterized protein; CDP-alcohol phosphatidyltransferase 1053839..1054786 Runella slithyformis DSM 19594 10869407 YP_004654460.1 CDS Runsl_0891 NC_015703.1 1054788 1055819 D PFAM: Uncharacterised protein family (UPF0104); COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834:IPR006402; KEGG: dfe:Dfer_2549 haloacid dehalogenase domain protein hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Haloacid dehalogenase domain protein hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; hypothetical protein 1054788..1055819 Runella slithyformis DSM 19594 10869408 YP_004654461.1 CDS Runsl_0892 NC_015703.1 1055855 1056565 D PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; COGs: COG0524 Sugar kinase ribokinase; InterPro IPR011611; KEGG: dfe:Dfer_2548 PfkB domain protein; PFAM: Carbohydrate/purine kinase; SPTR: PfkB domain protein; HAD superfamily hydrolase 1055855..1056565 Runella slithyformis DSM 19594 10869409 YP_004654462.1 CDS Runsl_0893 NC_015703.1 1056611 1057537 D PFAM: pfkB family carbohydrate kinase; KEGG: dfe:Dfer_2547 hypothetical protein; SPTR: uncharacterized protein; PfkB domain-containing protein 1056611..1057537 Runella slithyformis DSM 19594 10869410 YP_004654463.1 CDS Runsl_0894 NC_015703.1 1057566 1058132 D COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_0042 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; hypothetical protein 1057566..1058132 Runella slithyformis DSM 19594 10869411 YP_004654464.1 CDS Runsl_0895 NC_015703.1 1058623 1059969 D PFAM: Outer membrane efflux protein; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_0041 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; outer membrane efflux protein 1058623..1059969 Runella slithyformis DSM 19594 10869412 YP_004654465.1 CDS Runsl_0896 NC_015703.1 1059990 1061102 D PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036:IPR004764; KEGG: dfe:Dfer_0040 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: Acriflavin resistance protein; SPTR: Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; RND family efflux transporter MFP subunit 1059990..1061102 Runella slithyformis DSM 19594 10869413 YP_004654466.1 CDS Runsl_0897 NC_015703.1 1061155 1064334 D PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; InterPro IPR019861; KEGG: dfe:Dfer_3688 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 1061155..1064334 Runella slithyformis DSM 19594 10869414 YP_004654467.1 CDS Runsl_0898 NC_015703.1 1064548 1065609 D PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein; hypothetical protein 1064548..1065609 Runella slithyformis DSM 19594 10869415 YP_004654468.1 CDS Runsl_0899 NC_015703.1 1065720 1066079 R InterPro IPR007842; KEGG: geb:GM18_2404 HEPN domain-containing protein; PFAM: HEPN; SPTR: HEPN domain protein; hypothetical protein complement(1065720..1066079) Runella slithyformis DSM 19594 10869416 YP_004654469.1 CDS Runsl_0900 NC_015703.1 1066058 1066477 R PFAM: HEPN domain; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: sli:Slin_4817 sigma 54 interacting domain protein; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Sigma 54 interacting domain protein; HEPN domain-containing protein complement(1066058..1066477) Runella slithyformis DSM 19594 10869417 YP_004654470.1 CDS Runsl_0901 NC_015703.1 1066702 1067328 R PFAM: ABC transporter; KEGG: sli:Slin_5161 hypothetical protein; SPTR: uncharacterized protein; phosphonate-transporting ATPase complement(1066702..1067328) Runella slithyformis DSM 19594 10869418 YP_004654471.1 CDS Runsl_0902 NC_015703.1 1067419 1068588 R COGs: COG1435 Thymidine kinase; HAMAP: Thymidine kinase, subgroup; InterPro IPR020634:IPR001267; KEGG: dfe:Dfer_4396 thymidine kinase; PFAM: Thymidine kinase; PRIAM: Thymidine kinase; SPTR: Thymidine kinase; hypothetical protein complement(1067419..1068588) Runella slithyformis DSM 19594 10869419 YP_004654472.1 CDS Runsl_0903 NC_015703.1 1068715 1069302 D PFAM: Thymidine kinase; KEGG: pdi:BDI_1307 hypothetical protein; SPTR: uncharacterized protein; thymidine kinase 1068715..1069302 Runella slithyformis DSM 19594 10869420 YP_004654473.1 CDS Runsl_0904 NC_015703.1 1069341 1070582 D KEGG: shg:Sph21_2321 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1069341..1070582 Runella slithyformis DSM 19594 10869421 YP_004654474.1 CDS Runsl_0905 NC_015703.1 1070584 1070913 R PFAM: Protein of unknown function (DUF1044); hypothetical protein complement(1070584..1070913) Runella slithyformis DSM 19594 10869422 YP_004654475.1 CDS Runsl_0906 NC_015703.1 1070903 1071142 R InterPro IPR005046:IPR011889; KEGG: dfe:Dfer_0502 lipoprotein; PFAM: Protein of unknown function DUF285, lipoprotein predicted; SPTR: Lipoprotein; TIGRFAM: Bacterial surface protein 26-residue repeat; hypothetical protein complement(1070903..1071142) Runella slithyformis DSM 19594 10869423 YP_004654476.1 CDS Runsl_0907 NC_015703.1 1071522 1073087 D PFAM: Mycoplasma protein of unknown function, DUF285; TIGRFAM: bacterial surface protein 26-residue repeat; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR011659:IPR001375; KEGG: sli:Slin_2704 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein; lipoprotein 1071522..1073087 Runella slithyformis DSM 19594 10869424 YP_004654477.1 CDS Runsl_0908 NC_015703.1 1073335 1075308 D PFAM: Prolyl oligopeptidase; WD40-like Beta Propeller Repeat; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650; KEGG: fbc:FB2170_01821 peptidase; PFAM: Peptidase M20, dimerisation; Peptidase M20; SPTR: Peptidase M20; peptidase S9 prolyl oligopeptidase active site domain-containing protein 1073335..1075308 Runella slithyformis DSM 19594 10869425 YP_004654478.1 CDS Runsl_0909 NC_015703.1 1075391 1076923 D PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; KEGG: dfe:Dfer_2429 GtrA family protein; SPTR: GtrA family protein; peptidase dimerization domain-containing protein 1075391..1076923 Runella slithyformis DSM 19594 10869426 YP_004654479.1 CDS Runsl_0910 NC_015703.1 1077014 1077550 R PFAM: GtrA-like protein; COGs: COG4219 Antirepressor regulating drug resistance predicted signal transduction N-terminal membrane component; InterPro IPR008756; KEGG: sli:Slin_5187 peptidase M56 BlaR1; PFAM: Peptidase M56, BlaR1; SPTR: Peptidase M56 BlaR1; GtrA family protein complement(1077014..1077550) Runella slithyformis DSM 19594 10869427 YP_004654480.1 CDS Runsl_0911 NC_015703.1 1077763 1079841 R PFAM: BlaR1 peptidase M56; COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: sli:Slin_5186 CopY family transcriptional regulator; PFAM: Penicillinase repressor; SPTR: Transcriptional repressor, CopY family; peptidase M56 BlaR1 complement(1077763..1079841) Runella slithyformis DSM 19594 10869428 YP_004654481.1 CDS Runsl_0912 NC_015703.1 1079838 1080206 R PFAM: Penicillinase repressor; COGs: COG0014 Gamma-glutamyl phosphate reductase; HAMAP: Glutamate-5-semialdehyde dehydrogenase; InterPro IPR012134:IPR000965; KEGG: sli:Slin_0425 gamma-glutamyl phosphate reductase; PRIAM: Glutamate-5-semialdehyde dehydrogenase; SPTR: Gamma-glutamyl phosphate reductase; TIGRFAM: Gamma-glutamyl phosphate reductase GPR; CopY family transcriptional repressor complement(1079838..1080206) Runella slithyformis DSM 19594 10869429 YP_004654482.1 CDS Runsl_0913 NC_015703.1 1080644 1081897 D PFAM: Aldehyde dehydrogenase; TIGRFAM: gamma-glutamyl phosphate reductase; InterPro IPR000834; KEGG: sli:Slin_5441 hypothetical protein; PFAM: Peptidase M14, carboxypeptidase A; SPTR: uncharacterized protein; gamma-glutamyl phosphate reductase 1080644..1081897 Runella slithyformis DSM 19594 10869430 YP_004654483.1 CDS Runsl_0914 NC_015703.1 1081946 1083217 D PFAM: Zinc carboxypeptidase; KEGG: chu:CHU_0434 hypothetical protein; SPTR: Fjo21; peptidase M14 carboxypeptidase A 1081946..1083217 Runella slithyformis DSM 19594 10869431 YP_004654484.1 CDS Runsl_0915 NC_015703.1 1083402 1083761 D PFAM: DoxX; COGs: COG0414 Panthothenate synthetase; HAMAP: Pantoate-beta-alanine ligase; InterPro IPR003721; KEGG: sli:Slin_4462 pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; SPTR: Pantothenate synthetase; TIGRFAM: Pantoate-beta-alanine ligase; hypothetical protein 1083402..1083761 Runella slithyformis DSM 19594 10869432 YP_004654485.1 CDS Runsl_0916 NC_015703.1 1083984 1084868 D PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; COGs: COG0853 Aspartate 1-decarboxylase; HAMAP: Aspartate decarboxylase; InterPro IPR003190; KEGG: sli:Slin_3464 aspartate 1-decarboxylase; PFAM: Aspartate decarboxylase; PRIAM: Aspartate 1-decarboxylase; SPTR: Aspartate 1-decarboxylase; TIGRFAM: Aspartate decarboxylase; pantothenate synthetase 1083984..1084868 Runella slithyformis DSM 19594 10869433 YP_004654486.1 CDS Runsl_0917 NC_015703.1 1085041 1085391 D PFAM: Aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase; InterPro IPR005242; KEGG: dfe:Dfer_4554 integral membrane protein; SPTR: Integral membrane protein; aspartate 1-decarboxylase 1085041..1085391 Runella slithyformis DSM 19594 10869434 YP_004654487.1 CDS Runsl_0918 NC_015703.1 1085432 1086475 D PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein; COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR004820:IPR011914:IPR004821; KEGG: dfe:Dfer_4553 RfaE bifunctional protein; PFAM: Cytidylyltransferase; SPTR: RfaE bifunctional protein; TIGRFAM: RfaE bifunctional protein, domain II; Cytidyltransferase-related; hypothetical protein 1085432..1086475 Runella slithyformis DSM 19594 10869435 YP_004654488.1 CDS Runsl_0919 NC_015703.1 1086468 1086953 D PFAM: Cytidylyltransferase; TIGRFAM: rfaE bifunctional protein, domain II; cytidyltransferase-related domain; COGs: COG2738 Zn-dependent protease; InterPro IPR007395; KEGG: lby:Lbys_0458 peptidase membrane zinc metallopeptidase; PFAM: Peptidase, membrane zinc metallopeptidase, SPTR: Peptidase membrane zinc metallopeptidase; rfaE bifunctional protein 1086468..1086953 Runella slithyformis DSM 19594 10869436 YP_004654489.1 CDS Runsl_0920 NC_015703.1 1087050 1087760 D PFAM: neutral zinc metallopeptidase; InterPro IPR000601; KEGG: dfe:Dfer_2684 PKD domain containing protein; PFAM: PKD; SMART: PKD; SPTR: PKD domain containing protein; peptidase membrane zinc metallopeptidase 1087050..1087760 Runella slithyformis DSM 19594 10869437 YP_004654490.1 CDS Runsl_0921 NC_015703.1 1087809 1091474 R COGs: COG0345 Pyrroline-5-carboxylate reductase; InterPro IPR004455:IPR000304; KEGG: sli:Slin_5956 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; PRIAM: Pyrroline-5-carboxylate reductase; SPTR: Pyrroline-5-carboxylate reductase; TIGRFAM: Delta 1-pyrroline-5-carboxylate reductase; PKD domain-containing protein complement(1087809..1091474) Runella slithyformis DSM 19594 10869438 YP_004654491.1 CDS Runsl_0922 NC_015703.1 1091556 1092359 R PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR011659:IPR001375; KEGG: phe:Phep_2588 peptidase S9 prolyl oligopeptidase active site domain-containing protein; SPTR: Probable acylaminoacyl-peptidase; pyrroline-5-carboxylate reductase complement(1091556..1092359) Runella slithyformis DSM 19594 10869439 YP_004654492.1 CDS Runsl_0923 NC_015703.1 1092782 1095658 D PFAM: Prolyl oligopeptidase; InterPro IPR001387; KEGG: sli:Slin_1627 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: XRE family transcriptional regulator; peptidase S9 prolyl oligopeptidase active site domain-containing protein 1092782..1095658 Runella slithyformis DSM 19594 10869440 YP_004654493.1 CDS Runsl_0924 NC_015703.1 1095750 1096130 R PFAM: Helix-turn-helix; COGs: COG1819 Glycosyl transferase related to UDP-glucuronosyltransferase; InterPro IPR007235; KEGG: dfe:Dfer_5248 glycosyltransferase 28 domain; PFAM: Glycosyl transferase, family 28, C-terminal; SPTR: Glycosyltransferase, MGT family; helix-turn-helix domain-containing protein complement(1095750..1096130) Runella slithyformis DSM 19594 10869441 YP_004654494.1 CDS Runsl_0925 NC_015703.1 1096600 1097937 D PFAM: Glycosyltransferase 28 C-terminal domain; KEGG: sli:Slin_0773 peptidase C39 bacteriocin processing; SPTR: Peptidase C39 bacteriocin processing; glycosyl transferase family protein 1096600..1097937 Runella slithyformis DSM 19594 10869442 YP_004654495.1 CDS Runsl_0926 NC_015703.1 1097988 1098449 D PFAM: Peptidase C39 family; KEGG: dfe:Dfer_2224 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1097988..1098449 Runella slithyformis DSM 19594 10869443 YP_004654496.1 CDS Runsl_0927 NC_015703.1 1098465 1099421 D hypothetical protein 1098465..1099421 Runella slithyformis DSM 19594 10869444 YP_004654497.1 CDS Runsl_0928 NC_015703.1 1099480 1099674 D hypothetical protein 1099480..1099674 Runella slithyformis DSM 19594 10869445 YP_004654498.1 CDS Runsl_0929 NC_015703.1 1099721 1099918 D Prodigal; This gene is disrupted by insertion of repetitive element; manually curated; hypothetical protein 1099721..1099918 Runella slithyformis DSM 19594 10869446 YP_004654499.1 CDS Runsl_0931 NC_015703.1 1100449 1101460 D PFAM: Rhodopirellula transposase; 'Paired box' domain; transposase join(1100449..1100913,1100915..1101460) Runella slithyformis DSM 19594 10869448 YP_004654500.1 CDS Runsl_0932 NC_015703.1 1102058 1102264 D KEGG: pmo:Pmob_0677 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1102058..1102264 Runella slithyformis DSM 19594 10869449 YP_004654501.1 CDS Runsl_0933 NC_015703.1 1102254 1103291 D TIGRFAM: radical SAM additional 4Fe4S-binding domain; hypothetical protein 1102254..1103291 Runella slithyformis DSM 19594 10869450 YP_004654502.1 CDS Runsl_0934 NC_015703.1 1103288 1103401 D COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR005074:IPR001140:IPR003439:IPR003593; KEGG: sli:Slin_0781 ABC transporter; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; hypothetical protein 1103288..1103401 Runella slithyformis DSM 19594 10869451 YP_004654503.1 CDS Runsl_0935 NC_015703.1 1103398 1105752 D PFAM: ABC transporter; ABC transporter transmembrane region; Peptidase C39 family; InterPro IPR006143; KEGG: sli:Slin_0782 hypothetical protein; PFAM: Secretion protein HlyD; SPTR: uncharacterized protein; xenobiotic-transporting ATPase 1103398..1105752 Runella slithyformis DSM 19594 10869452 YP_004654504.1 CDS Runsl_0936 NC_015703.1 1105759 1107072 D COGs: COG0714 MoxR-like ATPase; InterPro IPR011703; KEGG: sli:Slin_2939 ATPase AAA; PFAM: ATPase associated with various cellular activities, AAA-3; SPTR: ATPase associated with various cellular activities AAA_3; secretion protein HlyD family protein 1105759..1107072 Runella slithyformis DSM 19594 10869453 YP_004654505.1 CDS Runsl_0937 NC_015703.1 1107073 1108029 R PFAM: ATPase associated with various cellular activities (AAA); COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119; KEGG: bvu:BVU_3813 transcriptional regulator; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; SPTR: uncharacterized protein; manually curated; ATPase complement(1107073..1108029) Runella slithyformis DSM 19594 10869454 YP_004654506.1 CDS Runsl_0938 NC_015703.1 1108262 1109158 D PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: mtt:Ftrac_0426 DNA-cytosine methyltransferase; PFAM: DNA methylase, C-5 cytosine-specific; PRIAM: DNA (cytosine-5-)-methyltransferase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA methylase, C-5 cytosine-specific; LysR family transcriptional regulator 1108262..1109158 Runella slithyformis DSM 19594 10869455 YP_004654507.1 CDS Runsl_0939 NC_015703.1 1109268 1110314 R PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); DNA-cytosine methyltransferase complement(1109268..1110314) Runella slithyformis DSM 19594 10869456 YP_004654508.1 CDS Runsl_0940 NC_015703.1 1110408 1110668 R Prodigal; manually curated; hypothetical protein complement(1110408..1110668) Runella slithyformis DSM 19594 10869457 YP_004654509.1 CDS Runsl_0942 NC_015703.1 1111283 1112449 R PFAM: Beta-lactamase; COGs: COG3394 conserved hypothetical protein; InterPro IPR006879; KEGG: sli:Slin_1052 YdjC family protein; PFAM: YdjC-like protein; SPTR: YdjC family protein; beta-lactamase complement(1111283..1112449) Runella slithyformis DSM 19594 10869459 YP_004654510.1 CDS Runsl_0943 NC_015703.1 1112552 1113544 D PFAM: YdjC-like protein; KEGG: sli:Slin_2577 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1112552..1113544 Runella slithyformis DSM 19594 10869460 YP_004654511.1 CDS Runsl_0944 NC_015703.1 1113949 1114929 D PFAM: Glycosyl transferase 8; InterPro IPR001173; KEGG: sli:Slin_2580 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; hypothetical protein 1113949..1114929 Runella slithyformis DSM 19594 10869461 YP_004654512.1 CDS Runsl_0945 NC_015703.1 1114973 1115989 D PFAM: Glycosyl transferase 2; COGs: COG0859 ADP-heptose:LPS heptosyltransferase; KEGG: sli:Slin_0408 ADP-heptose:LPS heptosyltransferase-like protein; SPTR: ADP-heptose:LPS heptosyltransferase-like protein; family 2 glycosyl transferase 1114973..1115989 Runella slithyformis DSM 19594 10869462 YP_004654513.1 CDS Runsl_0946 NC_015703.1 1116011 1117210 R PFAM: Glycosyltransferase 9 (heptosyltransferase); KEGG: sli:Slin_2579 hypothetical protein; SPTR: uncharacterized protein; ADP-heptose--LPS heptosyltransferase-like protein complement(1116011..1117210) Runella slithyformis DSM 19594 10869463 YP_004654514.1 CDS Runsl_0947 NC_015703.1 1117214 1118026 R COGs: COG0056 F0F1-type ATP synthase alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; InterPro IPR005294:IPR004100:IPR000194:IPR000793; KEGG: lby:Lbys_1612 ATP synthase f1 subcomplex alpha subunit; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; SPTR: ATP synthase subunit alpha; TIGRFAM: ATPase, F1 complex, alpha subunit; hypothetical protein complement(1117214..1118026) Runella slithyformis DSM 19594 10869464 YP_004654515.1 CDS Runsl_0948 NC_015703.1 1118412 1119989 D PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain; ATP synthase alpha/beta chain, C terminal domain; TIGRFAM: proton translocating ATP synthase, F1 alpha subunit; KEGG: cyp:PCC8801_2037 hypothetical protein; SPTR: uncharacterized protein; ATP synthase subunit alpha 1118412..1119989 Runella slithyformis DSM 19594 10869465 YP_004654516.1 CDS Runsl_0949 NC_015703.1 1119999 1120916 D COGs: COG0224 F0F1-type ATP synthase gamma subunit; HAMAP: ATP synthase gamma chain; InterPro IPR000131; KEGG: dfe:Dfer_4631 ATP synthase F1, gamma subunit; PFAM: ATPase, F1 complex, gamma subunit; SPTR: ATP synthase gamma chain; TIGRFAM: ATPase, F1 complex, gamma subunit; hypothetical protein 1119999..1120916 Runella slithyformis DSM 19594 10869466 YP_004654517.1 CDS Runsl_0950 NC_015703.1 1121033 1121923 D PFAM: ATP synthase; TIGRFAM: ATP synthase, F1 gamma subunit; KEGG: sli:Slin_3387 hypothetical protein; SPTR: uncharacterized protein; ATP synthase subunit gamma 1121033..1121923 Runella slithyformis DSM 19594 10869467 YP_004654518.1 CDS Runsl_0951 NC_015703.1 1122133 1122549 R Prodigal; manually curated; hypothetical protein complement(1122133..1122549) Runella slithyformis DSM 19594 10869468 YP_004654519.1 CDS Runsl_0953 NC_015703.1 1124247 1125077 R KEGG: sli:Slin_6357 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1124247..1125077) Runella slithyformis DSM 19594 10869470 YP_004654520.1 CDS Runsl_0954 NC_015703.1 1125560 1126564 R hypothetical protein complement(1125560..1126564) Runella slithyformis DSM 19594 10869471 YP_004654521.1 CDS Runsl_0955 NC_015703.1 1126661 1126804 R Prodigal; manually curated; hypothetical protein complement(1126661..1126804) Runella slithyformis DSM 19594 10869472 YP_004654522.1 CDS Runsl_0957 NC_015703.1 1127241 1127333 R Prodigal; manually curated; hypothetical protein complement(1127241..1127333) Runella slithyformis DSM 19594 10869474 YP_004654523.1 CDS Runsl_0960 NC_015703.1 1128544 1129188 D PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; LuxR family transcriptional regulator 1128544..1129188 Runella slithyformis DSM 19594 10869477 YP_004654524.1 CDS Runsl_0961 NC_015703.1 1129192 1130175 R COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094:IPR004113; KEGG: dfe:Dfer_3155 D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; PRIAM: D-lactate dehydrogenase (cytochrome); SPTR: D-lactate dehydrogenase (Cytochrome); hypothetical protein complement(1129192..1130175) Runella slithyformis DSM 19594 10869478 YP_004654525.1 CDS Runsl_0962 NC_015703.1 1130188 1133154 R PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; COGs: COG2264 Ribosomal protein L11 methylase; HAMAP: Ribosomal protein L11 methyltransferase; InterPro IPR010456; KEGG: sli:Slin_5617 ribosomal L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase; SPTR: Ribosomal protein L11 methyltransferase; D-lactate dehydrogenase complement(1130188..1133154) Runella slithyformis DSM 19594 10869479 YP_004654526.1 CDS Runsl_0963 NC_015703.1 1133290 1134123 D PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; KEGG: sli:Slin_5684 epimerase; SPTR: Epimerase; 50S ribosomal protein L11 methyltransferase 1133290..1134123 Runella slithyformis DSM 19594 10869480 YP_004654527.1 CDS Runsl_0964 NC_015703.1 1134120 1134950 D COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_5961 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; epimerase 1134120..1134950 Runella slithyformis DSM 19594 10869481 YP_004654528.1 CDS Runsl_0965 NC_015703.1 1135231 1135743 D PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG0812 UDP-N-acetylmuramate dehydrogenase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; InterPro IPR003170:IPR006094:IPR011601; KEGG: sli:Slin_5155 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal; SPTR: UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; ECF subfamily RNA polymerase sigma-24 subunit 1135231..1135743 Runella slithyformis DSM 19594 10869482 YP_004654529.1 CDS Runsl_0966 NC_015703.1 1135860 1136879 R PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR001678; KEGG: dfe:Dfer_1088 Fmu (Sun) domain protein; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; SPTR: Fmu (Sun) domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase complement(1135860..1136879) Runella slithyformis DSM 19594 10869483 YP_004654530.1 CDS Runsl_0967 NC_015703.1 1136926 1138122 R PFAM: NOL1/NOP2/sun family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB; KEGG: sli:Slin_3058 hypothetical protein; SPTR: uncharacterized protein; Fmu (Sun) domain-containing protein complement(1136926..1138122) Runella slithyformis DSM 19594 10869484 YP_004654531.1 CDS Runsl_0968 NC_015703.1 1139512 1139826 D KEGG: dfe:Dfer_3243 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1139512..1139826 Runella slithyformis DSM 19594 10869485 YP_004654532.1 CDS Runsl_0969 NC_015703.1 1139882 1140277 R COGs: COG2041 Sulfite oxidase; InterPro IPR006311:IPR000572:IPR005066; KEGG: sli:Slin_3624 oxidoreductase molybdopterin binding protein; PFAM: Oxidoreductase, molybdopterin binding; Moybdenum cofactor oxidoreductase, dimerisation; PRIAM: Sulfite oxidase; SPTR: Oxidoreductase molybdopterin binding protein; hypothetical protein complement(1139882..1140277) Runella slithyformis DSM 19594 10869486 YP_004654533.1 CDS Runsl_0970 NC_015703.1 1140420 1141652 R PFAM: Mo-co oxidoreductase dimerisation domain; Oxidoreductase molybdopterin binding domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839; KEGG: sli:Slin_6350 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; SPTR: Aminotransferase class I and II; sulfite oxidase complement(1140420..1141652) Runella slithyformis DSM 19594 10869487 YP_004654534.1 CDS Runsl_0971 NC_015703.1 1141981 1143153 D PFAM: Aminotransferase class I and II; KEGG: sli:Slin_5747 hypothetical protein; SPTR: uncharacterized protein; class I and II aminotransferase 1141981..1143153 Runella slithyformis DSM 19594 10869488 YP_004654535.1 CDS Runsl_0972 NC_015703.1 1143286 1143987 D InterPro IPR000835; KEGG: sli:Slin_4426 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; hypothetical protein 1143286..1143987 Runella slithyformis DSM 19594 10869489 YP_004654536.1 CDS Runsl_0973 NC_015703.1 1144065 1144595 D PFAM: MarR family; InterPro IPR001647; KEGG: dfe:Dfer_3428 transcriptional regulator, TetR family; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; regulatory protein MarR 1144065..1144595 Runella slithyformis DSM 19594 10869490 YP_004654537.1 CDS Runsl_0974 NC_015703.1 1145014 1145664 D PFAM: Bacterial regulatory proteins, tetR family; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_5506 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; TetR family transcriptional regulator 1145014..1145664 Runella slithyformis DSM 19594 10869491 YP_004654538.1 CDS Runsl_0975 NC_015703.1 1145728 1147083 D PFAM: Outer membrane efflux protein; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_3430 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; outer membrane efflux protein 1145728..1147083 Runella slithyformis DSM 19594 10869492 YP_004654539.1 CDS Runsl_0976 NC_015703.1 1147100 1148290 D PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: sli:Slin_5504 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; RND family efflux transporter MFP subunit 1147100..1148290 Runella slithyformis DSM 19594 10869493 YP_004654540.1 CDS Runsl_0977 NC_015703.1 1148309 1151785 D PFAM: AcrB/AcrD/AcrF family; COGs: COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; InterPro IPR002579; KEGG: fjo:Fjoh_0270 methionine-R-sulfoxide reductase; PFAM: Methionine sulphoxide reductase B; PRIAM: Peptide-methionine (R)-S-oxide reductase; SPTR: Methionine-R-sulfoxide reductase; TIGRFAM: Methionine sulphoxide reductase B; acriflavin resistance protein 1148309..1151785 Runella slithyformis DSM 19594 10869494 YP_004654541.1 CDS Runsl_0978 NC_015703.1 1151871 1152383 R PFAM: SelR domain; TIGRFAM: methionine-R-sulfoxide reductase; COGs: COG4634 conserved hypothetical protein; KEGG: dfe:Dfer_5087 hypothetical protein; SPTR: uncharacterized protein; methionine-R-sulfoxide reductase complement(1151871..1152383) Runella slithyformis DSM 19594 10869495 YP_004654542.1 CDS Runsl_0979 NC_015703.1 1152397 1152759 R PFAM: Protein of unknown function DUF82; COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: dfe:Dfer_5088 protein of unknown function DUF433; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein; hypothetical protein complement(1152397..1152759) Runella slithyformis DSM 19594 10869496 YP_004654543.1 CDS Runsl_0980 NC_015703.1 1152760 1152987 R PFAM: Protein of unknown function (DUF433); COGs: COG3358 conserved hypothetical protein; InterPro IPR012467; KEGG: sli:Slin_6369 hypothetical protein; PFAM: Protein of unknown function DUF1684; SPTR: uncharacterized protein; hypothetical protein complement(1152760..1152987) Runella slithyformis DSM 19594 10869497 YP_004654544.1 CDS Runsl_0981 NC_015703.1 1153073 1153687 R PFAM: Protein of unknown function (DUF1684); KEGG: sli:Slin_1343 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1153073..1153687) Runella slithyformis DSM 19594 10869498 YP_004654545.1 CDS Runsl_0982 NC_015703.1 1153783 1155492 R COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR000014:IPR013655:IPR013767:IPR003661:IPR 003594:IPR001610:IPR003018; KEGG: mtt:Ftrac_0408 pas/pac sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold; PAS fold-3; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAC motif; PAS; GAF; SPTR: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS; hypothetical protein complement(1153783..1155492) Runella slithyformis DSM 19594 10869499 YP_004654546.1 CDS Runsl_0983 NC_015703.1 1156244 1159759 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789; KEGG: cao:Celal_1932 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; multi-sensor signal transduction histidine kinase 1156244..1159759 Runella slithyformis DSM 19594 10869500 YP_004654547.1 CDS Runsl_0984 NC_015703.1 1159766 1160191 D PFAM: Response regulator receiver domain; COGs: COG0784 FOG: CheY-like receiver; InterPro IPR000014:IPR001789:IPR013655:IPR003661; KEGG: mtt:Ftrac_2272 pas/pac sensor protein; PFAM: Signal transduction response regulator, receiver region; PAS fold-3; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: Signal transduction response regulator, receiver region; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: PAS/PAC sensor protein; TIGRFAM: PAS; response regulator receiver protein 1159766..1160191 Runella slithyformis DSM 19594 10869501 YP_004654548.1 CDS Runsl_0985 NC_015703.1 1160229 1161218 D PFAM: Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; InterPro IPR001789; KEGG: mtt:Ftrac_2271 response regulator receiver; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver; PAS/PAC sensor protein 1160229..1161218 Runella slithyformis DSM 19594 10869502 YP_004654549.1 CDS Runsl_0986 NC_015703.1 1161211 1161621 D PFAM: Response regulator receiver domain; COGs: COG1725 transcriptional regulator protein; InterPro IPR000524; KEGG: sli:Slin_3237 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; SPTR: Transcriptional regulator, GntR family; response regulator receiver 1161211..1161621 Runella slithyformis DSM 19594 10869503 YP_004654550.1 CDS Runsl_0987 NC_015703.1 1161644 1162663 R PFAM: Bacterial regulatory proteins, gntR family; COGs: COG1179 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 1; InterPro IPR000594; KEGG: psn:Pedsa_2841 UBA/ThiF-type NAD/FAD binding protein; PFAM: UBA/THIF-type NAD/FAD binding fold; SPTR: UBA/THIF-type NAD/FAD binding protein; GntR family transcriptional regulator complement(1161644..1162663) Runella slithyformis DSM 19594 10869504 YP_004654551.1 CDS Runsl_0988 NC_015703.1 1162685 1163491 R PFAM: ThiF family; COGs: COG0084 Mg-dependent DNase; InterPro IPR001130; KEGG: phe:Phep_4182 TatD-related deoxyribonuclease; PFAM: Deoxyribonuclease, TatD-related; SPTR: TatD-related deoxyribonuclease; UBA/THIF-type NAD/FAD binding protein complement(1162685..1163491) Runella slithyformis DSM 19594 10869505 YP_004654552.1 CDS Runsl_0989 NC_015703.1 1163575 1164240 R PFAM: TatD related DNase; COGs: COG2153 acyltransferase; InterPro IPR000182; KEGG: lby:Lbys_1165 gcn5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; TatD-related deoxyribonuclease complement(1163575..1164240) Runella slithyformis DSM 19594 10869506 YP_004654553.1 CDS Runsl_0990 NC_015703.1 1164290 1164748 D PFAM: Acetyltransferase (GNAT) family; COGs: COG1301 Na+/H+-dicarboxylate symporter; InterPro IPR001991; KEGG: dfe:Dfer_3533 sodium:dicarboxylate symporter; PFAM: Sodium:dicarboxylate symporter; SPTR: Sodium:dicarboxylate symporter; N-acetyltransferase GCN5 1164290..1164748 Runella slithyformis DSM 19594 10869507 YP_004654554.1 CDS Runsl_0991 NC_015703.1 1164745 1166079 R PFAM: Sodium:dicarboxylate symporter family; KEGG: sli:Slin_3425 hypothetical protein; SPTR: uncharacterized protein; sodium:dicarboxylate symporter complement(1164745..1166079) Runella slithyformis DSM 19594 10869508 YP_004654555.1 CDS Runsl_0992 NC_015703.1 1166123 1166740 D COGs: COG0679 permease; InterPro IPR004776; KEGG: wvi:Weevi_0924 auxin efflux carrier; PFAM: Auxin efflux carrier; SPTR: uncharacterized protein; hypothetical protein 1166123..1166740 Runella slithyformis DSM 19594 10869509 YP_004654556.1 CDS Runsl_0993 NC_015703.1 1166770 1167690 R PFAM: Membrane transport protein; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR011662:IPR012910:IPR000531; KEGG: sli:Slin_5287 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; SPTR: TonB-dependent receptor; auxin efflux carrier family protein complement(1166770..1167690) Runella slithyformis DSM 19594 10869510 YP_004654557.1 CDS Runsl_0994 NC_015703.1 1167754 1170786 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: sli:Slin_4781 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; TonB-dependent receptor complement(1167754..1170786) Runella slithyformis DSM 19594 10869511 YP_004654558.1 CDS Runsl_0995 NC_015703.1 1170940 1171953 R PFAM: FecR protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR014327:IPR007627:IPR013249; KEGG: sli:Slin_4780 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; anti-FecI sigma factor FecR complement(1170940..1171953) Runella slithyformis DSM 19594 10869512 YP_004654559.1 CDS Runsl_0996 NC_015703.1 1172033 1172599 R PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; InterPro IPR002509; KEGG: tgr:Tgr7_2375 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: uncharacterized protein; ECF subfamily RNA polymerase sigma-24 subunit complement(1172033..1172599) Runella slithyformis DSM 19594 10869513 YP_004654560.1 CDS Runsl_0997 NC_015703.1 1172905 1173918 R PFAM: Polysaccharide deacetylase; COGs: COG0627 esterase; InterPro IPR000801; KEGG: sli:Slin_6266 esterase; PFAM: esterase; SPTR: esterase; polysaccharide deacetylase complement(1172905..1173918) Runella slithyformis DSM 19594 10869514 YP_004654561.1 CDS Runsl_0998 NC_015703.1 1173926 1174738 R PFAM: esterase; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR006311:IPR012307; KEGG: dfe:Dfer_3269 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; esterase complement(1173926..1174738) Runella slithyformis DSM 19594 10869515 YP_004654562.1 CDS Runsl_0999 NC_015703.1 1174868 1175800 R PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; KEGG: cyj:Cyan7822_1092 hypothetical protein; SPTR: uncharacterized protein; xylose isomerase domain-containing protein complement(1174868..1175800) Runella slithyformis DSM 19594 10869516 YP_004654563.1 CDS Runsl_1000 NC_015703.1 1176028 1176354 R InterPro IPR007367; KEGG: rrs:RoseRS_0655 hypothetical protein; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein; hypothetical protein complement(1176028..1176354) Runella slithyformis DSM 19594 10869517 YP_004654564.1 CDS Runsl_1001 NC_015703.1 1176338 1176568 R PFAM: Protein of unknown function (DUF433); InterPro IPR006311:IPR010869; KEGG: dfe:Dfer_0332 protein of unknown function DUF1501; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein; hypothetical protein complement(1176338..1176568) Runella slithyformis DSM 19594 10869518 YP_004654565.1 CDS Runsl_1002 NC_015703.1 1176678 1178192 R PFAM: Protein of unknown function (DUF1501); InterPro IPR011429:IPR011444; KEGG: dfe:Dfer_0333 protein of unknown function DUF1549; PFAM: Protein of unknown function DUF1549; Cytochrome C, Planctomycete; SPTR: uncharacterized protein; hypothetical protein complement(1176678..1178192) Runella slithyformis DSM 19594 10869519 YP_004654566.1 CDS Runsl_1003 NC_015703.1 1178283 1181495 R PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553); COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: zpr:ZPR_4364 bacterial regulatory helix-turn-helix protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; hypothetical protein complement(1178283..1181495) Runella slithyformis DSM 19594 10869520 YP_004654567.1 CDS Runsl_1004 NC_015703.1 1181736 1182611 D PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR013216; KEGG: chu:CHU_1562 SAM-dependent methyltransferase; PFAM: Methyltransferase type 11; SPTR: SAM-dependent methyltransferase; AraC family transcriptional regulator 1181736..1182611 Runella slithyformis DSM 19594 10869521 YP_004654568.1 CDS Runsl_1005 NC_015703.1 1182654 1183388 R PFAM: Methyltransferase domain; KEGG: sli:Slin_0320 hypothetical protein; SPTR: uncharacterized protein; type 11 methyltransferase complement(1182654..1183388) Runella slithyformis DSM 19594 10869522 YP_004654569.1 CDS Runsl_1006 NC_015703.1 1183448 1183870 R PFAM: Predicted nucleotide-binding protein, containing PIN domain; KEGG: sli:Slin_0321 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1183448..1183870) Runella slithyformis DSM 19594 10869523 YP_004654570.1 CDS Runsl_1007 NC_015703.1 1183870 1184094 R COGs: COG3622 Hydroxypyruvate isomerase; InterPro IPR012307; KEGG: sli:Slin_5812 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; hypothetical protein complement(1183870..1184094) Runella slithyformis DSM 19594 10869524 YP_004654571.1 CDS Runsl_1008 NC_015703.1 1184226 1185155 R PFAM: Xylose isomerase-like TIM barrel; xylose isomerase domain-containing protein complement(1184226..1185155) Runella slithyformis DSM 19594 10869525 YP_004654572.1 CDS Runsl_1009 NC_015703.1 1185237 1185434 R COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: lby:Lbys_1107 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SPTR: Integral membrane sensor signal transduction histidine kinase; hypothetical protein complement(1185237..1185434) Runella slithyformis DSM 19594 10869526 YP_004654573.1 CDS Runsl_1010 NC_015703.1 1185469 1186851 R PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; KEGG: sli:Slin_1749 hypothetical protein; SPTR: uncharacterized protein; integral membrane sensor signal transduction histidine kinase complement(1185469..1186851) Runella slithyformis DSM 19594 10869527 YP_004654574.1 CDS Runsl_1011 NC_015703.1 1186876 1187643 R COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: sli:Slin_1750 O-succinylbenzoic acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: o-succinylbenzoate--CoA ligase; SPTR: O-succinylbenzoic acid--CoA ligase; hypothetical protein complement(1186876..1187643) Runella slithyformis DSM 19594 10869528 YP_004654575.1 CDS Runsl_1012 NC_015703.1 1187674 1188729 R PFAM: AMP-binding enzyme; InterPro IPR017941; KEGG: sli:Slin_4885 Rieske (2Fe-2S) iron-sulphur domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Rieske (2Fe-2S) iron-sulphur domain protein; o-succinylbenzoate--CoA ligase complement(1187674..1188729) Runella slithyformis DSM 19594 10869529 YP_004654576.1 CDS Runsl_1013 NC_015703.1 1188738 1189199 R PFAM: Rieske [2Fe-2S] domain; InterPro IPR014867; KEGG: sli:Slin_3459 spore coat protein CotH; PFAM: Spore coat protein CotH; SPTR: Spore coat protein CotH; Rieske (2Fe-2S) domain-containing protein complement(1188738..1189199) Runella slithyformis DSM 19594 10869530 YP_004654577.1 CDS Runsl_1014 NC_015703.1 1189382 1191010 D PFAM: CotH protein; InterPro IPR007409; KEGG: sli:Slin_0367 hypothetical protein; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; SPTR: uncharacterized protein; spore coat protein CotH 1189382..1191010 Runella slithyformis DSM 19594 10869531 YP_004654578.1 CDS Runsl_1015 NC_015703.1 1191014 1191460 R COGs: COG0775 Nucleoside phosphorylase; InterPro IPR010944:IPR000845; KEGG: sli:Slin_0368 AMP nucleosidase; PFAM: Nucleoside phosphorylase; SPTR: AMP nucleosidase; TIGRFAM: AMP nucleosidase; Restriction endonuclease, type I, EcoRI, R subunit/type III complement(1191014..1191460) Runella slithyformis DSM 19594 10869532 YP_004654579.1 CDS Runsl_1016 NC_015703.1 1191542 1192312 D PFAM: Phosphorylase superfamily; TIGRFAM: AMP nucleosidase, InterPro IPR001440:IPR019734; KEGG: sli:Slin_0369 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; AMP nucleosidase 1191542..1192312 Runella slithyformis DSM 19594 10869533 YP_004654580.1 CDS Runsl_1017 NC_015703.1 1192413 1193753 R PFAM: Tetratricopeptide repeat; COGs: COG1575 1 4-dihydroxy-2-naphthoate octaprenyltransferase; InterPro IPR004657:IPR000537; KEGG: dfe:Dfer_2681 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; SPTR:1,4-dihydroxy-2-naphthoateoctaprenyltransferas e; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; hypothetical protein complement(1192413..1193753) Runella slithyformis DSM 19594 10869534 YP_004654581.1 CDS Runsl_1018 NC_015703.1 1193865 1194764 R PFAM: UbiA prenyltransferase; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(1193865..1194764) Runella slithyformis DSM 19594 10869535 YP_004654582.1 CDS Runsl_1019 NC_015703.1 1195063 1198035 R PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; HAMAP:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-di aminopimelateligase; InterPro IPR005761:IPR000713:IPR013221:IPR004101; KEGG: sli:Slin_4739 UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelateligase; SPTR: UDP-N-acetylmuramyl-tripeptide synthetase; TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelateligase; D-lactate dehydrogenase complement(1195063..1198035) Runella slithyformis DSM 19594 10869537 YP_004654583.1 CDS Runsl_1020 NC_015703.1 1198377 1199840 R PFAM: Mur ligase, glutamate ligase domain; Mur ligase, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: dfe:Dfer_4116 hypothetical protein; PFAM: Conserved hypothetical protein CHP00730; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00730; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase complement(1198377..1199840) Runella slithyformis DSM 19594 10869538 YP_004654584.1 CDS Runsl_1021 NC_015703.1 1199959 1200546 R PFAM: Possible lysine decarboxylase; TIGRFAM: TIGR00725 family protein; TIGR00730 family protein; COGs: COG1975 Xanthine and CO dehydrogenase maturation factor XdhC/CoxF family; InterPro IPR003777; KEGG: sli:Slin_5428 xanthine dehydrogenase; PFAM: XdhC- CoxI; SPTR: Xanthine dehydrogenase; hypothetical protein complement(1199959..1200546) Runella slithyformis DSM 19594 10869539 YP_004654585.1 CDS Runsl_1022 NC_015703.1 1200678 1201799 D PFAM: XdhC and CoxI family; COGs: COG0303 Molybdopterin biosynthesis enzyme; InterPro IPR020817:IPR005110:IPR001453:IPR005111; KEGG: sli:Slin_2812 molybdenum cofactor synthesis protein; PFAM: MoeA, N-terminal region, domain I/II; Molybdopterin binding; MoeA, C-terminal, domain IV; SPTR: Molybdopterin biosynthesis protein MoeA; TIGRFAM: Molybdenum cofactor synthesis; XshC-Cox1 family protein 1200678..1201799 Runella slithyformis DSM 19594 10869540 YP_004654586.1 CDS Runsl_1023 NC_015703.1 1201803 1203005 D PFAM: Probable molybdopterin binding domain; MoeA N-terminal region (domain I and II); MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain; InterPro IPR013346:IPR005144:IPR013509:IPR000788; KEGG: dfe:Dfer_3267 ribonucleoside-diphosphate reductase, alpha subunit; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal; ATP-cone; PRIAM: Ribonucleoside-diphosphate reductase; SPTR: Ribonucleoside-diphosphate reductase; TIGRFAM: Ribonucleoside-diphosphate reductase, alpha subunit; molybdenum cofactor synthesis domain-containing protein 1201803..1203005 Runella slithyformis DSM 19594 10869541 YP_004654587.1 CDS Runsl_1024 NC_015703.1 1203434 1205881 D PFAM: Ribonucleotide reductase, all-alpha domain; ATP cone domain; Ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; COGs: COG0718 conserved hypothetical protein; HAMAP: Uncharacterised protein family UPF0133; InterPro IPR004401; KEGG: dfe:Dfer_4005 hypothetical protein; PFAM: Uncharacterised protein family UPF0133; SPTR: UPF0133 protein Dfer_4005; TIGRFAM: Uncharacterised protein family UPF0133; ribonucleoside-diphosphate reductase subunit alpha 1203434..1205881 Runella slithyformis DSM 19594 10869542 YP_004654588.1 CDS Runsl_1025 NC_015703.1 1206004 1206342 D PFAM: Uncharacterised BCR, YbaB family COG0718; TIGRFAM: DNA-binding protein, YbaB/EbfC family; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: sli:Slin_6387 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; hypothetical protein 1206004..1206342 Runella slithyformis DSM 19594 10869543 YP_004654589.1 CDS Runsl_1026 NC_015703.1 1206343 1207380 D PFAM: Glycosyl transferase 2; COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753; KEGG: sli:Slin_5925 cell shape determining protein, MreB/Mrl family; PFAM: Cell shape determining protein MreB/Mrl; SPTR: Cell shape determining protein, MreB/Mrl family; TIGRFAM: Cell shape determining protein MreB/Mrl; family 2 glycosyl transferase 1206343..1207380 Runella slithyformis DSM 19594 10869544 YP_004654590.1 CDS Runsl_1027 NC_015703.1 1207479 1208504 D PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family; COGs: COG1792 Cell shape-determining protein; InterPro IPR007221; KEGG: dfe:Dfer_3831 rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; SPTR: Rod shape-determining protein MreC; MreB/Mrl family cell shape determining protein 1207479..1208504 Runella slithyformis DSM 19594 10869545 YP_004654591.1 CDS Runsl_1028 NC_015703.1 1208595 1209443 D PFAM: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; KEGG: sli:Slin_5927 hypothetical protein; SPTR: uncharacterized protein; Rod shape-determining protein MreC 1208595..1209443 Runella slithyformis DSM 19594 10869546 YP_004654592.1 CDS Runsl_1029 NC_015703.1 1209440 1209943 D COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_3829 RNA polymerase sigma factor RpoE; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein 1209440..1209943 Runella slithyformis DSM 19594 10869547 YP_004654593.1 CDS Runsl_1030 NC_015703.1 1210164 1210793 D PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: dfe:Dfer_3828 hypothetical protein; SPTR: uncharacterized protein; ECF subfamily RNA polymerase sigma-24 subunit 1210164..1210793 Runella slithyformis DSM 19594 10869548 YP_004654594.1 CDS Runsl_1031 NC_015703.1 1210920 1211222 D TIGRFAM: anti-sigma factor, TIGR02949 family; COGs: COG0194 Guanylate kinase; HAMAP: Guanylate kinase, sub-group; InterPro IPR017665:IPR008144:IPR008145; KEGG: sli:Slin_5548 guanylate kinase; PFAM: Guanylate kinase; PRIAM: Guanylate kinase; SMART: Guanylate kinase/L-type calcium channel region; SPTR: Guanylate kinase; TIGRFAM: Guanylate kinase, sub-group; hypothetical protein 1210920..1211222 Runella slithyformis DSM 19594 10869549 YP_004654595.1 CDS Runsl_1032 NC_015703.1 1211226 1211792 D PFAM: Guanylate kinase; TIGRFAM: guanylate kinase; COGs: COG0492 Thioredoxin reductase; InterPro IPR013027; KEGG: dfe:Dfer_3374 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Ferredoxin--NADP(+) reductase; SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; guanylate kinase 1211226..1211792 Runella slithyformis DSM 19594 10869550 YP_004654596.1 CDS Runsl_1033 NC_015703.1 1211904 1212908 R PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: bacillithiol system thiol disulfide oxidoreductase, YpdA family; COGs: COG2939 Carboxypeptidase C (cathepsin A); InterPro IPR001563; KEGG: sli:Slin_3251 peptidase S10 serine carboxypeptidase; PFAM: Peptidase S10, serine carboxypeptidase; SPTR: Peptidase S10 serine carboxypeptidase; ferredoxin-NADP reductase complement(1211904..1212908) Runella slithyformis DSM 19594 10869551 YP_004654597.1 CDS Runsl_1034 NC_015703.1 1213182 1214732 D PFAM: Serine carboxypeptidase; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: fbc:FB2170_04350 hypothetical protein; PFAM: Beta-lactamase-related; SPTR: uncharacterized protein; peptidase S10 serine carboxypeptidase 1213182..1214732 Runella slithyformis DSM 19594 10869552 YP_004654598.1 CDS Runsl_1035 NC_015703.1 1214909 1216207 D PFAM: Beta-lactamase; InterPro IPR000866; KEGG: dfe:Dfer_0285 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; beta-lactamase 1214909..1216207 Runella slithyformis DSM 19594 10869553 YP_004654599.1 CDS Runsl_1036 NC_015703.1 1216247 1217362 D PFAM: AhpC/TSA family; COGs: COG1515 Deoxyinosine 3'endonuclease (endonuclease V); HAMAP: Endonuclease V; InterPro IPR007581; KEGG: dfe:Dfer_3087 deoxyribonuclease V; PFAM: Endonuclease V; PRIAM: Deoxyribonuclease V; SPTR: Endonuclease V; alkyl hydroperoxide reductase 1216247..1217362 Runella slithyformis DSM 19594 10869554 YP_004654600.1 CDS Runsl_1037 NC_015703.1 1217475 1218182 D PFAM: Endonuclease V; KEGG: sli:Slin_6364 hypothetical protein; SPTR: uncharacterized protein; endonuclease V 1217475..1218182 Runella slithyformis DSM 19594 10869555 YP_004654601.1 CDS Runsl_1038 NC_015703.1 1218666 1219001 D InterPro IPR001789; KEGG: dfe:Dfer_0372 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; hypothetical protein 1218666..1219001 Runella slithyformis DSM 19594 10869556 YP_004654602.1 CDS Runsl_1039 NC_015703.1 1219022 1219447 R PFAM: Response regulator receiver domain; response regulator receiver complement(1219022..1219447) Runella slithyformis DSM 19594 10869557 YP_004654603.1 CDS Runsl_1040 NC_015703.1 1219792 1221027 R PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX; small GTP-binding protein domain; COGs: COG1073 Hydrolase of the alpha/beta superfamily; InterPro IPR000073; KEGG: fbc:FB2170_11196 hypothetical protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: uncharacterized protein; GTP-binding protein HflX complement(1219792..1221027) Runella slithyformis DSM 19594 10869559 YP_004654604.1 CDS Runsl_1041 NC_015703.1 1221221 1222066 D PFAM: lysophospholipase; KEGG: fbc:FB2170_11216 glyoxalase; SPTR: uncharacterized protein; alpha/beta hydrolase 1221221..1222066 Runella slithyformis DSM 19594 10869560 YP_004654605.1 CDS Runsl_1042 NC_015703.1 1222046 1222378 R COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650; KEGG: dfe:Dfer_4431 peptidase dimerisation domain protein; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: Succinyl-diaminopimelate desuccinylase; SPTR: Peptidase dimerisation domain protein; glyoxalase complement(1222046..1222378) Runella slithyformis DSM 19594 10869561 YP_004654606.1 CDS Runsl_1043 NC_015703.1 1222457 1223542 D PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; InterPro IPR011551:IPR004518; KEGG: dfe:Dfer_4447 nucleoside triphosphate pyrophosphohydrolase; PFAM: NTP pyrophosphohydrolase MazG, catalytic core; SPTR: MazG family protein; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial; succinyl-diaminopimelate desuccinylase 1222457..1223542 Runella slithyformis DSM 19594 10869562 YP_004654607.1 CDS Runsl_1044 NC_015703.1 1223654 1224469 D PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein; KEGG: sli:Slin_6006 hypothetical protein; SPTR: uncharacterized protein; nucleotide pyrophosphohydrolase 1223654..1224469 Runella slithyformis DSM 19594 10869563 YP_004654608.1 CDS Runsl_1045 NC_015703.1 1224582 1225670 D KEGG: sli:Slin_2807 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1224582..1225670 Runella slithyformis DSM 19594 10869564 YP_004654609.1 CDS Runsl_1046 NC_015703.1 1225709 1226302 D KEGG: sli:Slin_5997 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1225709..1226302 Runella slithyformis DSM 19594 10869565 YP_004654610.1 CDS Runsl_1047 NC_015703.1 1226338 1227168 D PFAM: Protein of unknown function, DUF481; InterPro IPR009288; KEGG: sli:Slin_5497 AIG2 family protein; PFAM: AIG2-like; SPTR: AIG2 family protein; hypothetical protein 1226338..1227168 Runella slithyformis DSM 19594 10869566 YP_004654611.1 CDS Runsl_1048 NC_015703.1 1227175 1227606 D PFAM: AIG2-like family; KEGG: sli:Slin_0266 hypothetical protein; SPTR: uncharacterized protein; AIG2 family protein 1227175..1227606 Runella slithyformis DSM 19594 10869567 YP_004654612.1 CDS Runsl_1049 NC_015703.1 1227648 1228355 D KEGG: lby:Lbys_1691 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1227648..1228355 Runella slithyformis DSM 19594 10869568 YP_004654613.1 CDS Runsl_1050 NC_015703.1 1228445 1228780 D PFAM: Protein of unknown function (DUF2853); COGs: COG4365 conserved hypothetical protein; HAMAP: UPF0747 protein; InterPro IPR011199; KEGG: dfe:Dfer_3548 hypothetical protein; PFAM: Uncharacterised conserved protein UCP012535; SPTR: UPF0747 protein Dfer_3548; hypothetical protein 1228445..1228780 Runella slithyformis DSM 19594 10869569 YP_004654614.1 CDS Runsl_1051 NC_015703.1 1228860 1230467 R PFAM: Uncharacterized protein conserved in bacteria (DUF2317); TIGRFAM: bacillithiol biosynthesis cysteine-adding enzyme BshC; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: mtt:Ftrac_3360 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; hypothetical protein complement(1228860..1230467) Runella slithyformis DSM 19594 10869570 YP_004654615.1 CDS Runsl_1052 NC_015703.1 1230637 1231320 D PFAM: Glycosyl transferase 2; KEGG: sjp:SJA_C1-23170 hypothetical protein; SPTR: uncharacterized protein; family 2 glycosyl transferase 1230637..1231320 Runella slithyformis DSM 19594 10869571 YP_004654616.1 CDS Runsl_1053 NC_015703.1 1231374 1231631 D COGs: COG0527 Aspartokinase; InterPro IPR001341:IPR001048; KEGG: dfe:Dfer_3817 aspartate kinase; PFAM: Aspartate/glutamate/uridylate kinase; SPTR: Aspartokinase; TIGRFAM: Aspartate kinase region; hypothetical protein 1231374..1231631 Runella slithyformis DSM 19594 10869572 YP_004654617.1 CDS Runsl_1054 NC_015703.1 1231686 1233044 D PFAM: Amino acid kinase; TIGRFAM: aspartate kinase; COGs: COG1943 Transposase and inactivated derivatives; KEGG: lby:Lbys_0121 hypothetical protein; SPTR: uncharacterized protein; aspartate kinase 1231686..1233044 Runella slithyformis DSM 19594 10869573 YP_004654618.1 CDS Runsl_1055 NC_015703.1 1233714 1234148 D PFAM: Transposase IS200 like; COGs: COG0172 Seryl-tRNA synthetase; InterPro IPR002317:IPR015866:IPR002314; KEGG: sli:Slin_5630 seryl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Seryl-tRNA synthetase, class IIa, N-terminal; PRIAM: Serine--tRNA ligase; SPTR: Seryl-tRNA synthetase; TIGRFAM: Seryl-tRNA synthetase, class IIa; hypothetical protein 1233714..1234148 Runella slithyformis DSM 19594 10869574 YP_004654619.1 CDS Runsl_1056 NC_015703.1 1234557 1235825 D PFAM: Seryl-tRNA synthetase N-terminal domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: seryl-tRNA synthetase; KEGG: bth:BT_4152 beta-galactosidase I; SPTR: uncharacterized protein; manually curated; seryl-tRNA synthetase 1234557..1235825 Runella slithyformis DSM 19594 10869575 YP_004654620.1 CDS Runsl_1057 NC_015703.1 1235901 1236830 R PFAM: Glycosyl hydrolases family 43; COGs: COG3238 conserved hypothetical protein; InterPro IPR006750; KEGG: dfe:Dfer_4040 protein of unknown function DUF606; PFAM: Protein of unknown function DUF606; SPTR: uncharacterized protein; beta-galactosidase I complement(1235901..1236830) Runella slithyformis DSM 19594 10869576 YP_004654621.1 CDS Runsl_1058 NC_015703.1 1236890 1237336 R PFAM: Protein of unknown function, DUF606; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: sli:Slin_4653 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein complement(1236890..1237336) Runella slithyformis DSM 19594 10869577 YP_004654622.1 CDS Runsl_1059 NC_015703.1 1237398 1238645 R PFAM: Predicted permease; COGs: COG2815 conserved hypothetical protein; InterPro IPR005543; KEGG: sli:Slin_0294 PASTA domain containing protein; PFAM: PASTA; SMART: PASTA; SPTR: PASTA domain containing protein; hypothetical protein complement(1237398..1238645) Runella slithyformis DSM 19594 10869578 YP_004654623.1 CDS Runsl_1060 NC_015703.1 1238971 1239762 D PFAM: PASTA domain; KEGG: sli:Slin_0295 hypothetical protein; SPTR: uncharacterized protein; protein PASTA domain-containing protein 1238971..1239762 Runella slithyformis DSM 19594 10869579 YP_004654624.1 CDS Runsl_1061 NC_015703.1 1239890 1241701 D COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: dfe:Dfer_2923 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Rhodanese domain protein; hypothetical protein 1239890..1241701 Runella slithyformis DSM 19594 10869580 YP_004654625.1 CDS Runsl_1062 NC_015703.1 1241791 1242087 D PFAM: Rhodanese-like domain; COGs: COG0233 Ribosome recycling factor; HAMAP: Ribosome recycling factor, bacterial-like; InterPro IPR015998:IPR002661; KEGG: sli:Slin_2387 ribosome recycling factor; PFAM: Ribosome recycling factor; SPTR: Ribosome-recycling factor; TIGRFAM: Ribosome recycling factor; rhodanese-like protein 1241791..1242087 Runella slithyformis DSM 19594 10869581 YP_004654626.1 CDS Runsl_1063 NC_015703.1 1242174 1242734 R PFAM: Ribosome recycling factor; TIGRFAM: ribosome recycling factor; KEGG: cyc:PCC7424_4118 hypothetical protein; SPTR: uncharacterized protein; ribosome-recycling factor complement(1242174..1242734) Runella slithyformis DSM 19594 10869582 YP_004654627.1 CDS Runsl_1064 NC_015703.1 1242745 1243245 R KEGG: cyc:PCC7424_4117 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1242745..1243245) Runella slithyformis DSM 19594 10869583 YP_004654628.1 CDS Runsl_1065 NC_015703.1 1243242 1244561 R COGs: COG0528 Uridylate kinase; InterPro IPR015963:IPR001048; KEGG: dfe:Dfer_2998 uridylate kinase; PFAM: Aspartate/glutamate/uridylate kinase; PRIAM: UMP kinase; SPTR: Uridylate kinase; TIGRFAM: Uridylate kinase, bacteria; hypothetical protein complement(1243242..1244561) Runella slithyformis DSM 19594 10869584 YP_004654629.1 CDS Runsl_1066 NC_015703.1 1244565 1245287 R PFAM: Amino acid kinase; TIGRFAM: uridylate kinase; COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR000089; KEGG: sli:Slin_2390 biotin/lipoyl attachment domain-containing protein; PFAM: Biotin/lipoyl attachment; SPTR: Biotin/lipoyl attachment domain-containing protein; uridylate kinase complement(1244565..1245287) Runella slithyformis DSM 19594 10869585 YP_004654630.1 CDS Runsl_1067 NC_015703.1 1245352 1245852 R PFAM: Biotin-requiring enzyme; InterPro IPR000620; KEGG: sli:Slin_2391 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: uncharacterized protein; biotin/lipoyl attachment domain-containing protein complement(1245352..1245852) Runella slithyformis DSM 19594 10869586 YP_004654631.1 CDS Runsl_1068 NC_015703.1 1245893 1246804 R PFAM: EamA-like transporter family; KEGG: sli:Slin_6546 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1245893..1246804) Runella slithyformis DSM 19594 10869587 YP_004654632.1 CDS Runsl_1069 NC_015703.1 1246877 1248163 R COGs: COG0793 Periplasmic protease; InterPro IPR011659:IPR005151; KEGG: lby:Lbys_3108 peptidase S41; PFAM: Peptidase S41; WD40-like Beta Propeller; SPTR: Peptidase S41; hypothetical protein complement(1246877..1248163) Runella slithyformis DSM 19594 10869588 YP_004654633.1 CDS Runsl_1070 NC_015703.1 1248308 1251547 D PFAM: WD40-like Beta Propeller Repeat; Peptidase S41; peptidase S41 1248308..1251547 Runella slithyformis DSM 19594 10869589 YP_004654634.1 CDS Runsl_1071 NC_015703.1 1251605 1251748 R KEGG: dfe:Dfer_4933 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1251605..1251748) Runella slithyformis DSM 19594 10869590 YP_004654635.1 CDS Runsl_1072 NC_015703.1 1251750 1252193 R COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR004602:IPR003439; KEGG: dfe:Dfer_3281 excinuclease ABC, A subunit; PFAM: ABC transporter-like; SPTR: Excinuclease ABC, A subunit; TIGRFAM: Excinuclease ABC, A subunit; hypothetical protein complement(1251750..1252193) Runella slithyformis DSM 19594 10869591 YP_004654636.1 CDS Runsl_1073 NC_015703.1 1252443 1255307 D PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit; KEGG: ppd:Ppro_1272 hypothetical protein; SPTR: uncharacterized protein; excinuclease ABC subunit A 1252443..1255307 Runella slithyformis DSM 19594 10869592 YP_004654637.1 CDS Runsl_1074 NC_015703.1 1255654 1256217 D KEGG: dfe:Dfer_5688 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1255654..1256217 Runella slithyformis DSM 19594 10869593 YP_004654638.1 CDS Runsl_1075 NC_015703.1 1256506 1256970 R COGs: COG2234 aminopeptidase; InterPro IPR003137:IPR007484; KEGG: sli:Slin_0518 glutamate carboxypeptidase II; PFAM: Peptidase M28; Protease-associated PA; PRIAM: Glutamate carboxypeptidase II; SPTR: Glutamate carboxypeptidase II; hypothetical protein complement(1256506..1256970) Runella slithyformis DSM 19594 10869594 YP_004654639.1 CDS Runsl_1076 NC_015703.1 1257231 1259408 D PFAM: PA domain; Peptidase M28; Transferrin receptor-like dimerisation domain; InterPro IPR011429:IPR011444; KEGG: sli:Slin_5453 hypothetical protein; PFAM: Protein of unknown function DUF1549; Cytochrome C, Planctomycete; SPTR: uncharacterized protein; glutamate carboxypeptidase II 1257231..1259408 Runella slithyformis DSM 19594 10869595 YP_004654640.1 CDS Runsl_1077 NC_015703.1 1259490 1262249 D PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553); InterPro IPR006311:IPR010869; KEGG: phe:Phep_2714 hypothetical protein; PFAM: Protein of unknown function DUF1501; SPTR: Twin-arginine translocation pathway signal; hypothetical protein 1259490..1262249 Runella slithyformis DSM 19594 10869596 YP_004654641.1 CDS Runsl_1078 NC_015703.1 1262251 1263735 D PFAM: Protein of unknown function (DUF1501); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG2013 conserved hypothetical protein; InterPro IPR002838; KEGG: dfe:Dfer_4264 protein of unknown function DUF124; PFAM: Protein of unknown function DUF124; SPTR: uncharacterized protein; TIGRFAM: Protein of unknown function DUF124; hypothetical protein 1262251..1263735 Runella slithyformis DSM 19594 10869597 YP_004654642.1 CDS Runsl_1079 NC_015703.1 1263901 1264680 R PFAM: Protein of unknown function DUF124; TIGRFAM: TIGR00266 family protein; KEGG: sli:Slin_4892 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1263901..1264680) Runella slithyformis DSM 19594 10869598 YP_004654643.1 CDS Runsl_1080 NC_015703.1 1264694 1264900 R hypothetical protein complement(1264694..1264900) Runella slithyformis DSM 19594 10869599 YP_004654644.1 CDS Runsl_1081 NC_015703.1 1265084 1266412 D COGs: COG0538 Isocitrate dehydrogenase; InterPro IPR004790:IPR001804; KEGG: dfe:Dfer_3730 isocitrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; PRIAM: Isocitrate dehydrogenase (NADP(+)); SPTR: Isocitrate dehydrogenase [NADP]; TIGRFAM: Isocitrate dehydrogenase NADP-dependent, eukaryotic; hypothetical protein 1265084..1266412 Runella slithyformis DSM 19594 10869600 YP_004654645.1 CDS Runsl_1082 NC_015703.1 1266475 1267692 D PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, eukaryotic type; KEGG: dfe:Dfer_3845 hypothetical protein; SPTR: uncharacterized protein; isocitrate dehydrogenase 1266475..1267692 Runella slithyformis DSM 19594 10869601 YP_004654646.1 CDS Runsl_1083 NC_015703.1 1267770 1268696 D hypothetical protein 1267770..1268696 Runella slithyformis DSM 19594 10869602 YP_004654647.1 CDS Runsl_1084 NC_015703.1 1268888 1269118 D COGs: COG4115 conserved hypothetical protein; InterPro IPR009614; KEGG: bsa:Bacsa_1800 addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin, Txe/YoeB; SPTR: uncharacterized protein; TIGRFAM: Addiction module toxin, Txe/YoeB; hypothetical protein 1268888..1269118 Runella slithyformis DSM 19594 10869603 YP_004654648.1 CDS Runsl_1085 NC_015703.1 1269115 1269384 D PFAM: Plasmid encoded toxin Txe; TIGRFAM: toxin-antitoxin system, toxin component, Txe/YoeB family; addiction module toxin, RelE/StbE family; KEGG: sus:Acid_4693 hypothetical protein; SPTR: uncharacterized protein; Txe/YoeB family addiction module toxin 1269115..1269384 Runella slithyformis DSM 19594 10869604 YP_004654649.1 CDS Runsl_1086 NC_015703.1 1269500 1269913 R COGs: COG1073 Hydrolase of the alpha/beta superfamily; InterPro IPR000073; KEGG: fbc:FB2170_11191 hypothetical protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Hydrolase with alpha/beta fold protein; hypothetical protein complement(1269500..1269913) Runella slithyformis DSM 19594 10869605 YP_004654650.1 CDS Runsl_1087 NC_015703.1 1269985 1270839 R PFAM: lysophospholipase; alpha/beta hydrolase complement(1269985..1270839) Runella slithyformis DSM 19594 10869606 YP_004654651.1 CDS Runsl_1088 NC_015703.1 1270845 1271018 R COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: cpi:Cpin_1928 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; PRIAM: Xylulokinase; SPTR: Carbohydrate kinase FGGY; hypothetical protein complement(1270845..1271018) Runella slithyformis DSM 19594 10869607 YP_004654652.1 CDS Runsl_1089 NC_015703.1 1271045 1272520 D PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; xylulokinase 1271045..1272520 Runella slithyformis DSM 19594 10869608 YP_004654653.1 CDS Runsl_1090 NC_015703.1 1272624 1272794 D COGs: COG4731 conserved hypothetical protein; InterPro IPR019223; KEGG: sli:Slin_1853 hypothetical protein; PFAM: Protein of unknown function DUF2147; SPTR: uncharacterized protein; hypothetical protein 1272624..1272794 Runella slithyformis DSM 19594 10869609 YP_004654654.1 CDS Runsl_1091 NC_015703.1 1272930 1273370 D PFAM: Uncharacterized protein conserved in bacteria (DUF2147); COGs: COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain); InterPro IPR006367; KEGG: sli:Slin_0478 siroheme synthase; SPTR: Siroheme synthase; TIGRFAM: Sirohaem synthase, N-terminal; hypothetical protein 1272930..1273370 Runella slithyformis DSM 19594 10869610 YP_004654655.1 CDS Runsl_1092 NC_015703.1 1273397 1273963 D TIGRFAM: siroheme synthase, N-terminal domain; KEGG: sli:Slin_2835 hypothetical protein; SPTR: uncharacterized protein; siroheme synthase 1273397..1273963 Runella slithyformis DSM 19594 10869611 YP_004654656.1 CDS Runsl_1093 NC_015703.1 1273970 1274293 R COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: dfe:Dfer_2622 glycosyl transferase 9; PFAM: Glycosyl transferase, family 9; SPTR: Glycosyl transferase 9; hypothetical protein complement(1273970..1274293) Runella slithyformis DSM 19594 10869612 YP_004654657.1 CDS Runsl_1094 NC_015703.1 1274372 1275358 D PFAM: Glycosyltransferase 9 (heptosyltransferase); COGs: COG1956 GAF domain-containing protein; KEGG: sli:Slin_5928 GAF domain-containing protein; SPTR: GAF domain-containing protein; glycosyl transferase family protein 1274372..1275358 Runella slithyformis DSM 19594 10869613 YP_004654658.1 CDS Runsl_1095 NC_015703.1 1275626 1276111 R manually curated; GAF domain-containing protein complement(1275626..1276111) Runella slithyformis DSM 19594 10869614 YP_004654659.1 CDS Runsl_1097 NC_015703.1 1276759 1276998 D InterPro IPR002035; KEGG: dfe:Dfer_3846 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: von Willebrand factor type A; hypothetical protein 1276759..1276998 Runella slithyformis DSM 19594 10869616 YP_004654660.1 CDS Runsl_1098 NC_015703.1 1277077 1278111 D PFAM: von Willebrand factor type A domain; COGs: COG1404 Subtilisin-like serine protease; InterPro IPR010259:IPR000209; KEGG: sli:Slin_1710 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Proteinase inhibitor I9, subtilisin propeptide; PRIAM: Aqualysin 1; SPTR: Peptidase S8 and S53 subtilisin kexin sedolisin; von Willebrand factor A 1277077..1278111 Runella slithyformis DSM 19594 10869617 YP_004654661.1 CDS Runsl_1099 NC_015703.1 1278086 1279300 R PFAM: Peptidase inhibitor I9; Subtilase; InterPro IPR005632; KEGG: dfe:Dfer_3973 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); aqualysin 1 complement(1278086..1279300) Runella slithyformis DSM 19594 10869618 YP_004654662.1 CDS Runsl_1100 NC_015703.1 1279490 1280098 R PFAM: Outer membrane protein (OmpH-like); KEGG: sli:Slin_5972 hypothetical protein; SPTR: uncharacterized protein; outer membrane chaperone Skp complement(1279490..1280098) Runella slithyformis DSM 19594 10869619 YP_004654663.1 CDS Runsl_1101 NC_015703.1 1280335 1281720 R PFAM: PAP2 superfamily; manually curated; hypothetical protein complement(1280335..1281720) Runella slithyformis DSM 19594 10869620 YP_004654664.1 CDS Runsl_1103 NC_015703.1 1282294 1283688 R PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucosamine mutase; KEGG: dfe:Dfer_3940 hypothetical protein; SPTR: uncharacterized protein; phosphoglucosamine mutase complement(1282294..1283688) Runella slithyformis DSM 19594 10869622 YP_004654665.1 CDS Runsl_1104 NC_015703.1 1283925 1284359 D COGs: COG2936 acyl esterase; InterPro IPR005674:IPR009894:IPR000383:IPR013736; KEGG: sli:Slin_0314 X-Pro dipeptidyl-peptidase domain protein; PFAM: Peptidase S15/CocE/NonD, C-terminal; Peptidase S15; Exported; SPTR: X-Pro dipeptidyl-peptidase domain protein; TIGRFAM: CocE/NonD hydrolase; hypothetical protein 1283925..1284359 Runella slithyformis DSM 19594 10869623 YP_004654666.1 CDS Runsl_1105 NC_015703.1 1284407 1286497 D PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: hydrolase, CocE/NonD family; KEGG: sli:Slin_0177 hypothetical protein; SPTR: Conserved repeat domain protein; hydrolase 1284407..1286497 Runella slithyformis DSM 19594 10869624 YP_004654667.1 CDS Runsl_1106 NC_015703.1 1286680 1287309 D COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154:IPR013149; KEGG: fbc:FB2170_14683 oxidoreductase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SPTR: Alcohol dehydrogenase zinc-binding domain protein; hypothetical protein 1286680..1287309 Runella slithyformis DSM 19594 10869625 YP_004654668.1 CDS Runsl_1107 NC_015703.1 1287343 1288314 D PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; KEGG: sli:Slin_1168 hypothetical protein; SPTR: uncharacterized protein; NADPH:quinone reductase 1287343..1288314 Runella slithyformis DSM 19594 10869626 YP_004654669.1 CDS Runsl_1108 NC_015703.1 1288367 1289797 R InterPro IPR012910:IPR000531; KEGG: sli:Slin_1167 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein complement(1288367..1289797) Runella slithyformis DSM 19594 10869627 YP_004654670.1 CDS Runsl_1109 NC_015703.1 1289818 1292970 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: sli:Slin_1165 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug complement(1289818..1292970) Runella slithyformis DSM 19594 10869628 YP_004654671.1 CDS Runsl_1110 NC_015703.1 1293360 1294889 R InterPro IPR012910:IPR000531; KEGG: sli:Slin_1166 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: outer membrane protein, probably involved in nutrient binding; hypothetical protein complement(1293360..1294889) Runella slithyformis DSM 19594 10869629 YP_004654672.1 CDS Runsl_1111 NC_015703.1 1294916 1298110 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG4330 membrane protein; InterPro IPR009793; KEGG: dfe:Dfer_4887 protein of unknown function DUF1361; PFAM: Protein of unknown function DUF1361; SPTR: uncharacterized protein; TonB-dependent receptor plug complement(1294916..1298110) Runella slithyformis DSM 19594 10869630 YP_004654673.1 CDS Runsl_1112 NC_015703.1 1298649 1299284 D PFAM: Protein of unknown function (DUF1361); COGs: COG0818 Diacylglycerol kinase; InterPro IPR000829; KEGG: sli:Slin_1186 diacylglycerol kinase; PFAM: Diacylglycerol kinase, prokaryotic; SPTR: Diacylglycerol kinase; hypothetical protein 1298649..1299284 Runella slithyformis DSM 19594 10869631 YP_004654674.1 CDS Runsl_1113 NC_015703.1 1299324 1299701 D PFAM: Prokaryotic diacylglycerol kinase; KEGG: sli:Slin_1185 hypothetical protein; SPTR: uncharacterized protein; diacylglycerol kinase 1299324..1299701 Runella slithyformis DSM 19594 10869632 YP_004654675.1 CDS Runsl_1114 NC_015703.1 1299707 1300351 D InterPro IPR001845; KEGG: sli:Slin_1184 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family; hypothetical protein 1299707..1300351 Runella slithyformis DSM 19594 10869633 YP_004654676.1 CDS Runsl_1115 NC_015703.1 1300388 1300681 D PFAM: Bacterial regulatory protein, arsR family; KEGG: sli:Slin_0198 hypothetical protein; SPTR: uncharacterized protein; regulatory protein ArsR 1300388..1300681 Runella slithyformis DSM 19594 10869634 YP_004654677.1 CDS Runsl_1116 NC_015703.1 1300816 1301685 R KEGG: mtt:Ftrac_2315 TonB family protein; SPTR: TonB family protein; hypothetical protein complement(1300816..1301685) Runella slithyformis DSM 19594 10869635 YP_004654678.1 CDS Runsl_1117 NC_015703.1 1301806 1303098 R PFAM: Gram-negative bacterial tonB protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_0159 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein complement(1301806..1303098) Runella slithyformis DSM 19594 10869636 YP_004654679.1 CDS Runsl_1118 NC_015703.1 1303091 1303675 R PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; InterPro IPR002035; KEGG: dfe:Dfer_0158 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: von Willebrand factor type A; ECF subfamily RNA polymerase sigma-24 subunit complement(1303091..1303675) Runella slithyformis DSM 19594 10869637 YP_004654680.1 CDS Runsl_1119 NC_015703.1 1303953 1305821 D PFAM: von Willebrand factor; von Willebrand factor type A domain; Domain of unknown function (DUF3520); KEGG: dfe:Dfer_2485 hypothetical protein; SPTR: uncharacterized protein; von Willebrand factor A 1303953..1305821 Runella slithyformis DSM 19594 10869638 YP_004654681.1 CDS Runsl_1120 NC_015703.1 1306035 1306670 R COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: dfe:Dfer_2590 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; hypothetical protein complement(1306035..1306670) Runella slithyformis DSM 19594 10869639 YP_004654682.1 CDS Runsl_1121 NC_015703.1 1306812 1307522 R PFAM: short chain dehydrogenase; COGs: COG2020 protein-S-isoprenylcysteine methyltransferase; KEGG: dae:Dtox_2171 hypothetical protein; SPTR: uncharacterized protein; 3-oxoacyl-ACP reductase complement(1306812..1307522) Runella slithyformis DSM 19594 10869640 YP_004654683.1 CDS Runsl_1122 NC_015703.1 1307559 1308152 R PFAM: NnrU protein; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sli:Slin_3274 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; hypothetical protein complement(1307559..1308152) Runella slithyformis DSM 19594 10869641 YP_004654684.1 CDS Runsl_1123 NC_015703.1 1308173 1309882 D PFAM: Beta-lactamase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: sli:Slin_4717 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; beta-lactamase 1308173..1309882 Runella slithyformis DSM 19594 10869642 YP_004654685.1 CDS Runsl_1124 NC_015703.1 1310013 1311359 D PFAM: Oxidoreductase, C-terminal alpha/beta domain; Oxidoreductase, NAD-binding Rossmann fold; COGs: COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; InterPro IPR010918; KEGG: sli:Slin_6005 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, C-terminal; PRIAM: Phosphoribosylformylglycinamidine cyclo-ligase; SPTR: Phosphoribosylformylglycinamidine cyclo-ligase; oxidoreductase domain-containing protein 1310013..1311359 Runella slithyformis DSM 19594 10869643 YP_004654686.1 CDS Runsl_1125 NC_015703.1 1311558 1312724 D PFAM: AIR synthase related protein, C-terminal domain; KEGG: cyh:Cyan8802_4363 hypothetical protein; SPTR: uncharacterized protein; phosphoribosylformylglycinamidine cyclo-ligase 1311558..1312724 Runella slithyformis DSM 19594 10869644 YP_004654687.1 CDS Runsl_1126 NC_015703.1 1312745 1312993 D hypothetical protein 1312745..1312993 Runella slithyformis DSM 19594 10869645 YP_004654688.1 CDS Runsl_1127 NC_015703.1 1313218 1313496 R KEGG: ent:Ent638_1339 hypothetical protein; SPTR: Bacterial SH3 domain-containing protein; hypothetical protein complement(1313218..1313496) Runella slithyformis DSM 19594 10869646 YP_004654689.1 CDS Runsl_1128 NC_015703.1 1313552 1314271 R COGs: COG0013 Alanyl-tRNA synthetase; InterPro IPR002318:IPR018164:IPR012947:IPR003156; KEGG: dfe:Dfer_5667 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1; SPTR: Alanyl-tRNA synthetase; TIGRFAM: Alanyl-tRNA synthetase, class IIc; hypothetical protein complement(1313552..1314271) Runella slithyformis DSM 19594 10869647 YP_004654690.1 CDS Runsl_1129 NC_015703.1 1314605 1317259 D PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase; alanyl-tRNA synthetase 1314605..1317259 Runella slithyformis DSM 19594 10869648 YP_004654691.1 CDS Runsl_1130 NC_015703.1 1317428 1317730 R COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: sli:Slin_1830 glucose/sorbosone dehydrogenase; SPTR: Glucose/sorbosone dehydrogenase-like protein; hypothetical protein complement(1317428..1317730) Runella slithyformis DSM 19594 10869649 YP_004654692.1 CDS Runsl_1131 NC_015703.1 1317886 1319292 D PFAM: Glucose / Sorbosone dehydrogenase; KEGG: dfe:Dfer_4012 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1317886..1319292 Runella slithyformis DSM 19594 10869650 YP_004654693.1 CDS Runsl_1132 NC_015703.1 1319302 1320156 R COGs: COG0628 permease; InterPro IPR002549; KEGG: dfe:Dfer_4013 protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; SPTR: uncharacterized protein; hypothetical protein complement(1319302..1320156) Runella slithyformis DSM 19594 10869651 YP_004654694.1 CDS Runsl_1133 NC_015703.1 1320238 1321332 D PFAM: Domain of unknown function DUF20; KEGG: sli:Slin_3273 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1320238..1321332 Runella slithyformis DSM 19594 10869652 YP_004654695.1 CDS Runsl_1134 NC_015703.1 1321442 1322494 D PFAM: Planctomycete cytochrome C; TIGRFAM: conserved hypothetical protein, HNE_0200 family; COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterPro IPR003660:IPR013767:IPR003594:IPR000014; KEGG: sli:Slin_2346 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; PAS fold; SMART: ATP-binding region, ATPase-like; HAMP linker domain; PAS; SPTR: Two-component system sensor histidine kinase; hypothetical protein 1321442..1322494 Runella slithyformis DSM 19594 10869653 YP_004654696.1 CDS Runsl_1135 NC_015703.1 1322502 1323785 R PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; KEGG: fjo:Fjoh_4705 hypothetical protein; SPTR: uncharacterized protein; multi-sensor signal transduction histidine kinase complement(1322502..1323785) Runella slithyformis DSM 19594 10869654 YP_004654697.1 CDS Runsl_1136 NC_015703.1 1323818 1324501 D COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR002078:IPR002197:IPR003593; KEGG: sli:Slin_2347 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family; hypothetical protein 1323818..1324501 Runella slithyformis DSM 19594 10869655 YP_004654698.1 CDS Runsl_1137 NC_015703.1 1324540 1325961 R PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: sli:Slin_2348 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; Fis family transcriptional regulator complement(1324540..1325961) Runella slithyformis DSM 19594 10869656 YP_004654699.1 CDS Runsl_1138 NC_015703.1 1325965 1327140 R PFAM: Predicted permease; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dfe:Dfer_5612 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein complement(1325965..1327140) Runella slithyformis DSM 19594 10869657 YP_004654700.1 CDS Runsl_1139 NC_015703.1 1327147 1328397 R PFAM: Predicted permease; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: sli:Slin_2350 ABC transporter; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; hypothetical protein complement(1327147..1328397) Runella slithyformis DSM 19594 10869658 YP_004654701.1 CDS Runsl_1140 NC_015703.1 1328400 1329065 R PFAM: ABC transporter; TIGRFAM: bacteriocin export ABC transporter, lactococcin 972 group; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_5610 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: exported outer membrane protein; phosphonate-transporting ATPase complement(1328400..1329065) Runella slithyformis DSM 19594 10869659 YP_004654702.1 CDS Runsl_1141 NC_015703.1 1329158 1330708 R PFAM: Outer membrane efflux protein; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_5609 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; outer membrane efflux protein complement(1329158..1330708) Runella slithyformis DSM 19594 10869660 YP_004654703.1 CDS Runsl_1142 NC_015703.1 1330816 1332063 R KEGG: cts:Ctha_0434 hypothetical protein; SPTR: uncharacterized protein; RND family efflux transporter MFP subunit complement(1330816..1332063) Runella slithyformis DSM 19594 10869661 YP_004654704.1 CDS Runsl_1143 NC_015703.1 1332221 1333174 R TIGRFAM: conserved hypothetical protein ( transposase or invertase); COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; InterPro IPR001041:IPR002888; KEGG: sli:Slin_1103 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; Ferredoxin; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: (2Fe-2S)-binding domain protein; hypothetical protein complement(1332221..1333174) Runella slithyformis DSM 19594 10869662 YP_004654705.1 CDS Runsl_1144 NC_015703.1 1333423 1333887 D PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR006311:IPR008274; KEGG: sli:Slin_1104 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; isoquinoline 1-oxidoreductase 1333423..1333887 Runella slithyformis DSM 19594 10869663 YP_004654706.1 CDS Runsl_1145 NC_015703.1 1333939 1336068 D PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR006258:IPR013027:IPR004099; KEGG: lby:Lbys_2718 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; PRIAM: Dihydrolipoyl dehydrogenase; SPTR: Dihydrolipoyl dehydrogenase; TIGRFAM: Dihydrolipoamide dehydrogenase; isoquinoline 1-oxidoreductase 1333939..1336068 Runella slithyformis DSM 19594 10869664 YP_004654707.1 CDS Runsl_1146 NC_015703.1 1336197 1337591 D PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase; KEGG: sli:Slin_5307 hypothetical protein; SPTR: uncharacterized protein; dihydrolipoamide dehydrogenase 1336197..1337591 Runella slithyformis DSM 19594 10869665 YP_004654708.1 CDS Runsl_1147 NC_015703.1 1337777 1338661 D KEGG: sli:Slin_1652 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1337777..1338661 Runella slithyformis DSM 19594 10869666 YP_004654709.1 CDS Runsl_1148 NC_015703.1 1338664 1339170 R KEGG: cao:Celal_1650 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1338664..1339170) Runella slithyformis DSM 19594 10869667 YP_004654710.1 CDS Runsl_1149 NC_015703.1 1339250 1340377 R KEGG: fps:FP0437 exopolyphosphatase; SPTR: Probable exopolyphosphatase; hypothetical protein complement(1339250..1340377) Runella slithyformis DSM 19594 10869668 YP_004654711.1 CDS Runsl_1150 NC_015703.1 1340414 1341565 R PFAM: Ppx/GppA phosphatase; hypothetical protein complement(1340414..1341565) Runella slithyformis DSM 19594 10869669 YP_004654712.1 CDS Runsl_1151 NC_015703.1 1341609 1342037 R KEGG: dfe:Dfer_4771 secreted protein; SPTR: Secreted protein; hypothetical protein complement(1341609..1342037) Runella slithyformis DSM 19594 10869670 YP_004654713.1 CDS Runsl_1152 NC_015703.1 1342402 1343058 D COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: sli:Slin_0504 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: Response regulator receiver protein; secreted protein 1342402..1343058 Runella slithyformis DSM 19594 10869671 YP_004654714.1 CDS Runsl_1153 NC_015703.1 1343128 1343523 R PFAM: LytTr DNA-binding domain; response regulator receiver protein complement(1343128..1343523) Runella slithyformis DSM 19594 10869672 YP_004654715.1 CDS Runsl_1154 NC_015703.1 1343648 1343842 D COGs: COG1970 Large-conductance mechanosensitive channel; InterPro IPR001185; KEGG: sli:Slin_4749 large conductance mechanosensitive channel protein; PFAM: Large-conductance mechanosensitive channel; SPTR: Large conductance mechanosensitive channel protein; TIGRFAM: Large-conductance mechanosensitive channel; hypothetical protein 1343648..1343842 Runella slithyformis DSM 19594 10869673 YP_004654716.1 CDS Runsl_1155 NC_015703.1 1343779 1344117 R PFAM: Large-conductance mechanosensitive channel, MscL; TIGRFAM: large conductance mechanosensitive channel protein; KEGG: dfe:Dfer_1560 hypothetical protein; SPTR: uncharacterized protein; large conductance mechanosensitive channel protein complement(1343779..1344117) Runella slithyformis DSM 19594 10869674 YP_004654717.1 CDS Runsl_1156 NC_015703.1 1344174 1345076 R PFAM: Protein of unknown function (DUF3078); InterPro IPR008910; KEGG: sli:Slin_4747 TM helix repeat-containing protein; PFAM: Conserved TM helix; SPTR: Conserved TM helix repeat-containing protein; hypothetical protein complement(1344174..1345076) Runella slithyformis DSM 19594 10869675 YP_004654718.1 CDS Runsl_1157 NC_015703.1 1345108 1345941 R PFAM: Mechanosensitive ion channel; Conserved TM helix; hypothetical protein complement(1345108..1345941) Runella slithyformis DSM 19594 10869676 YP_004654719.1 CDS Runsl_1158 NC_015703.1 1345954 1346139 R COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: lby:Lbys_2030 RNA polymerase, sigma-24 subunit, ecf subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein complement(1345954..1346139) Runella slithyformis DSM 19594 10869677 YP_004654720.1 CDS Runsl_1159 NC_015703.1 1346162 1346926 R PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG0264 Translation elongation factor Ts; HAMAP: Elongation factor Ts; InterPro IPR001816:IPR000449:IPR014039; KEGG: sli:Slin_4744 translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal; SPTR: Elongation factor Ts; TIGRFAM: Translation elongation factor EFTs/EF1B; ECF subfamily RNA polymerase sigma-24 subunit complement(1346162..1346926) Runella slithyformis DSM 19594 10869678 YP_004654721.1 CDS Runsl_1160 NC_015703.1 1347008 1347844 R PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts; COGs: COG0052 Ribosomal protein S2; InterPro IPR005706:IPR001865; KEGG: sli:Slin_4743 ribosomal protein S2; PFAM: Ribosomal protein S2; SPTR: 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; elongation factor Ts complement(1347008..1347844) Runella slithyformis DSM 19594 10869679 YP_004654722.1 CDS Runsl_1161 NC_015703.1 1348100 1348906 R PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type; COGs: COG0103 Ribosomal protein S9; InterPro IPR000754; KEGG: sli:Slin_4742 ribosomal protein S9; PFAM: Ribosomal protein S9; SPTR: 30S ribosomal protein S9; 30S ribosomal protein S2 complement(1348100..1348906) Runella slithyformis DSM 19594 10869680 YP_004654723.1 CDS Runsl_1162 NC_015703.1 1349080 1349466 R PFAM: Ribosomal protein S9/S16; COGs: COG0102 Ribosomal protein L13; InterPro IPR005823:IPR005822; KEGG: dfe:Dfer_3497 ribosomal protein L13; PFAM: Ribosomal protein L13; SPTR: 50S ribosomal protein L13; TIGRFAM: Ribosomal protein L13, bacterial-type; 30S ribosomal protein S9 complement(1349080..1349466) Runella slithyformis DSM 19594 10869681 YP_004654724.1 CDS Runsl_1163 NC_015703.1 1349522 1349965 R PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type; COGs: COG0029 Aspartate oxidase; InterPro IPR005288:IPR003953; KEGG: dfe:Dfer_4734 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; PRIAM: L-aspartate oxidase; SPTR: L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; 50S ribosomal protein L13 complement(1349522..1349965) Runella slithyformis DSM 19594 10869682 YP_004654725.1 CDS Runsl_1164 NC_015703.1 1350205 1351788 D PFAM: domain; FAD binding domain; TIGRFAM: L-aspartate oxidase; KEGG: sli:Slin_3395 hypothetical protein; SPTR: uncharacterized protein; L-aspartate oxidase 1350205..1351788 Runella slithyformis DSM 19594 10869683 YP_004654726.1 CDS Runsl_1165 NC_015703.1 1351956 1353215 D COGs: COG0684 Demethylmenaquinone methyltransferase; KEGG: dfe:Dfer_2455 demethylmenaquinone methyltransferase-like protein; SPTR: Demethylmenaquinone methyltransferase-like protein; hypothetical protein 1351956..1353215 Runella slithyformis DSM 19594 10869684 YP_004654727.1 CDS Runsl_1166 NC_015703.1 1353265 1354179 R PFAM: Demethylmenaquinone methyltransferase; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341:IPR013342; KEGG: sli:Slin_6070 galactonate dehydratase; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; PRIAM: Galactonate dehydratase; SPTR: Galactonate dehydratase; demethylmenaquinone methyltransferase-like protein complement(1353265..1354179) Runella slithyformis DSM 19594 10869685 YP_004654728.1 CDS Runsl_1167 NC_015703.1 1354472 1355905 D PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; KEGG: dfe:Dfer_5070 hypothetical protein; SPTR: uncharacterized protein; galactonate dehydratase 1354472..1355905 Runella slithyformis DSM 19594 10869686 YP_004654729.1 CDS Runsl_1168 NC_015703.1 1356031 1356447 D InterPro IPR006260; KEGG: dfe:Dfer_3658 TonB family protein; SPTR: TonB family protein; TIGRFAM: TonB, C-terminal; hypothetical protein 1356031..1356447 Runella slithyformis DSM 19594 10869687 YP_004654730.1 CDS Runsl_1169 NC_015703.1 1356459 1358003 R PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; TonB family protein complement(1356459..1358003) Runella slithyformis DSM 19594 10869688 YP_004654731.1 CDS Runsl_1170 NC_015703.1 1358144 1359418 D COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sli:Slin_3517 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; hypothetical protein 1358144..1359418 Runella slithyformis DSM 19594 10869689 YP_004654732.1 CDS Runsl_1171 NC_015703.1 1359457 1360773 D PFAM: Beta-lactamase; COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR014189:IPR013154:IPR013149; KEGG: ote:Oter_0170 PIG3 family NAD(P)H quinone oxidoreductase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SPTR: NAD(P)H quinone oxidoreductase, PIG3 family; TIGRFAM: Quinone oxidoreductase , PIG3; beta-lactamase 1359457..1360773 Runella slithyformis DSM 19594 10869690 YP_004654733.1 CDS Runsl_1172 NC_015703.1 1360776 1361747 R PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; COGs: COG3347 conserved hypothetical protein; InterPro IPR013454:IPR001303:IPR002198; KEGG: fjo:Fjoh_4215 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; Class II aldolase/adducin, N-terminal; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; TIGRFAM: Bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; NAD(P)H quinone oxidoreductase complement(1360776..1361747) Runella slithyformis DSM 19594 10869691 YP_004654734.1 CDS Runsl_1173 NC_015703.1 1361899 1364031 D PFAM: Class II Aldolase and Adducin N-terminal domain; short chain dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; COGs: COG4952 sugar isomerase; InterPro IPR012307; KEGG: fjo:Fjoh_4214 xylose isomerase domain-containing protein; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; rhamnulose-1-phosphate aldolase/alcohol dehydrogenase 1361899..1364031 Runella slithyformis DSM 19594 10869692 YP_004654735.1 CDS Runsl_1174 NC_015703.1 1364141 1365415 D PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484; KEGG: shg:Sph21_0514 carbohydrate kinase, FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; SPTR: Carbohydrate kinase, FGGY; xylose isomerase domain-containing protein 1364141..1365415 Runella slithyformis DSM 19594 10869693 YP_004654736.1 CDS Runsl_1175 NC_015703.1 1365417 1366817 D PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; carbohydrate kinase 1365417..1366817 Runella slithyformis DSM 19594 10869694 YP_004654737.1 CDS Runsl_1176 NC_015703.1 1367219 1368616 R PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain; InterPro IPR011444; KEGG: sli:Slin_5453 hypothetical protein; PFAM: Protein of unknown function DUF1549; SPTR: uncharacterized protein; RNA-metabolising metallo-beta-lactamase complement(1367219..1368616) Runella slithyformis DSM 19594 10869696 YP_004654738.1 CDS Runsl_1177 NC_015703.1 1368941 1371724 R PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Carbohydrate binding module (family 6); Protein of unknown function (DUF1553); COGs: COG2267 Lysophospholipase; InterPro IPR000073; KEGG: afu:AF1753 lysophospholipase; PFAM: Alpha/beta hydrolase fold-1; SPTR: Lysophospholipase; hypothetical protein complement(1368941..1371724) Runella slithyformis DSM 19594 10869697 YP_004654739.1 CDS Runsl_1178 NC_015703.1 1371843 1372670 D PFAM: lysophospholipase; KEGG: dfe:Dfer_3974 hypothetical protein; SPTR: uncharacterized protein; alpha/beta hydrolase 1371843..1372670 Runella slithyformis DSM 19594 10869698 YP_004654740.1 CDS Runsl_1179 NC_015703.1 1372737 1373069 R COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692; KEGG: lby:Lbys_3063 peptidase S45 penicillin amidase; PFAM: Peptidase S45, penicillin amidase; SPTR: Peptidase S45 penicillin amidase; hypothetical protein complement(1372737..1373069) Runella slithyformis DSM 19594 10869699 YP_004654741.1 CDS Runsl_1180 NC_015703.1 1373245 1375695 R PFAM: Penicillin amidase; peptidase S45 penicillin amidase complement(1373245..1375695) Runella slithyformis DSM 19594 10869700 YP_004654742.1 CDS Runsl_1181 NC_015703.1 1375839 1376003 D COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545:IPR001650:IPR014001; KEGG: dfe:Dfer_0542 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein; hypothetical protein 1375839..1376003 Runella slithyformis DSM 19594 10869701 YP_004654743.1 CDS Runsl_1182 NC_015703.1 1375932 1377179 R PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; InterPro IPR002686; KEGG: chu:CHU_0236 transposase; PFAM: Transposase IS200-like; SPTR: Transposase; DEAD/DEAH box helicase complement(1375932..1377179) Runella slithyformis DSM 19594 10869702 YP_004654744.1 CDS Runsl_1183 NC_015703.1 1377264 1377725 R PFAM: Transposase IS200 like; transposase IS200 family protein complement(1377264..1377725) Runella slithyformis DSM 19594 10869703 YP_004654745.1 CDS Runsl_1184 NC_015703.1 1377913 1378416 R InterPro IPR013428:IPR013427:IPR003088; KEGG: dfe:Dfer_0279 membrane-bound dehydrogenase domain protein; PFAM: Cytochrome c, class I; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; haem-binding region; hypothetical protein complement(1377913..1378416) Runella slithyformis DSM 19594 10869704 YP_004654746.1 CDS Runsl_1185 NC_015703.1 1378432 1382262 R PFAM: Cytochrome c; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type; KEGG: dfe:Dfer_4881 hypothetical protein; SPTR: uncharacterized protein; membrane-bound dehydrogenase domain-containing protein complement(1378432..1382262) Runella slithyformis DSM 19594 10869705 YP_004654747.1 CDS Runsl_1186 NC_015703.1 1382601 1383671 R KEGG: sli:Slin_6049 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1382601..1383671) Runella slithyformis DSM 19594 10869706 YP_004654748.1 CDS Runsl_1187 NC_015703.1 1383816 1384547 D hypothetical protein 1383816..1384547 Runella slithyformis DSM 19594 10869707 YP_004654749.1 CDS Runsl_1188 NC_015703.1 1384631 1386682 R COGs: COG1879 ABC-type sugar transport system periplasmic component; InterProIPR003661:IPR003594:IPR001789:IPR000005:IPR 018060; KEGG: sli:Slin_3199 AraC family transcriptional regulator; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; Helix-turn-helix, AraC type; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; Helix-turn-helix, AraC domain; SPTR: Two component transcriptional regulator, AraC family; hypothetical protein complement(1384631..1386682) Runella slithyformis DSM 19594 10869708 YP_004654750.1 CDS Runsl_1189 NC_015703.1 1386963 1389683 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR003663:IPR005828; KEGG: sli:Slin_3184 sugar transporter; PFAM: General substrate transporter; SPTR: Sugar transporter; TIGRFAM: Sugar/inositol transporter; AraC family transcriptional regulator 1386963..1389683 Runella slithyformis DSM 19594 10869709 YP_004654751.1 CDS Runsl_1190 NC_015703.1 1390053 1391378 D PFAM: Sugar (and other) transporter; TIGRFAM: MFS transporter, sugar porter (SP) family; COGs: COG0524 Sugar kinase ribokinase; InterPro IPR011611; KEGG: sli:Slin_3183 PfkB domain protein; PFAM: Carbohydrate/purine kinase; PRIAM: Fructokinase; SPTR: PfkB domain protein; sugar transporter 1390053..1391378 Runella slithyformis DSM 19594 10869710 YP_004654752.1 CDS Runsl_1191 NC_015703.1 1391400 1392293 D PFAM: pfkB family carbohydrate kinase; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1601 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; fructokinase 1391400..1392293 Runella slithyformis DSM 19594 10869711 YP_004654753.1 CDS Runsl_1192 NC_015703.1 1392299 1395466 D PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_1602 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 1392299..1395466 Runella slithyformis DSM 19594 10869712 YP_004654754.1 CDS Runsl_1193 NC_015703.1 1395488 1397194 D PFAM: SusD family; COGs: COG1621 Beta-fructosidase (levanase/invertase); InterPro IPR013148:IPR013189:IPR001362; KEGG: bss:BSUW23_13050 levanase; PFAM: Glycosyl hydrolases family 32, N-terminal; Glycosyl hydrolase 32, C-terminal; SMART: Glycoside hydrolase, family 32; SPTR: Levanase; RagB/SusD domain-containing protein 1395488..1397194 Runella slithyformis DSM 19594 10869713 YP_004654755.1 CDS Runsl_1194 NC_015703.1 1397304 1398809 D PFAM: Glycosyl hydrolases family 32 C terminal; Glycosyl hydrolases family 32 N-terminal domain; KEGG: sli:Slin_2024 hypothetical protein; SPTR: uncharacterized protein; glycosyl hydrolase 32 domain-containing protein 1397304..1398809 Runella slithyformis DSM 19594 10869714 YP_004654756.1 CDS Runsl_1195 NC_015703.1 1398889 1399677 R COGs: COG3836 2 4-dihydroxyhept-2-ene-1 7-dioic acid aldolase; InterPro IPR005000; KEGG: sli:Slin_1071 4-hydroxy-2-oxovalerate aldolase; PFAM: HpcH/HpaI aldolase; PRIAM: 4-hydroxy-2-oxovalerate aldolase; SPTR: 4-hydroxy-2-oxovalerate aldolase; hypothetical protein complement(1398889..1399677) Runella slithyformis DSM 19594 10869715 YP_004654757.1 CDS Runsl_1196 NC_015703.1 1400251 1401024 D PFAM: HpcH/HpaI aldolase/citrate lyase; COGs: COG2610 H+/gluconate symporter and related permease; InterPro IPR003474; KEGG: sli:Slin_1070 gluconate transporter; PFAM: Gluconate transporter; SPTR: Gluconate transporter; 4-hydroxy-2-oxovalerate aldolase 1400251..1401024 Runella slithyformis DSM 19594 10869716 YP_004654758.1 CDS Runsl_1197 NC_015703.1 1401074 1402522 D PFAM: GntP family permease; COGs: COG2721 Altronate dehydratase; InterPro IPR017654:IPR013974:IPR007392; KEGG: rso:RSp0830 D-galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase, C-terminal; SAF domain; PRIAM: Galactarate dehydratase; SPTR: (D)-galactarate dehydrogenase; TIGRFAM: Galactarate dehydratase; gluconate transporter 1401074..1402522 Runella slithyformis DSM 19594 10869717 YP_004654759.1 CDS Runsl_1198 NC_015703.1 1402587 1404140 D PFAM: D-galactarate dehydratase / Altronate hydrolase, C terminus; SAF domain; TIGRFAM: galactarate dehydratase; COGs: COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase; InterPro IPR006398:IPR006115; KEGG: dfe:Dfer_1409 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; PRIAM: 2-hydroxy-3-oxopropionate reductase; SPTR: 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; galactarate dehydratase 1402587..1404140 Runella slithyformis DSM 19594 10869718 YP_004654760.1 CDS Runsl_1199 NC_015703.1 1404283 1405143 D PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; COGs: COG1312 D-mannonate dehydratase; InterPro IPR004628; KEGG: sli:Slin_1069 mannonate dehydratase; PFAM: Mannonate dehydratase; SPTR: Mannonate dehydratase; 2-hydroxy-3-oxopropionate reductase 1404283..1405143 Runella slithyformis DSM 19594 10869719 YP_004654761.1 CDS Runsl_1200 NC_015703.1 1405200 1406315 D PFAM: D-mannonate dehydratase (UxuA); mannonate dehydratase 1405200..1406315 Runella slithyformis DSM 19594 10869720 YP_004654762.1 CDS Runsl_1201 NC_015703.1 1406247 1406513 R COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341:IPR013342; KEGG: sli:Slin_1068 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; PRIAM: Glucarate dehydratase; SPTR: Mandelate racemase/muconate lactonizing protein; hypothetical protein complement(1406247..1406513) Runella slithyformis DSM 19594 10869721 YP_004654763.1 CDS Runsl_1202 NC_015703.1 1406521 1407825 D PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; KEGG: sli:Slin_2253 hypothetical protein; SPTR: uncharacterized protein; glucarate dehydratase 1406521..1407825 Runella slithyformis DSM 19594 10869722 YP_004654764.1 CDS Runsl_1203 NC_015703.1 1407907 1408188 D InterPro IPR001387; KEGG: fjo:Fjoh_2803 bacteriophage CI repressor; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Bacteriophage CI repressor; hypothetical protein 1407907..1408188 Runella slithyformis DSM 19594 10869723 YP_004654765.1 CDS Runsl_1204 NC_015703.1 1408306 1408722 R PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein complement(1408306..1408722) Runella slithyformis DSM 19594 10869724 YP_004654766.1 CDS Runsl_1205 NC_015703.1 1408858 1409247 R hypothetical protein complement(1408858..1409247) Runella slithyformis DSM 19594 10869725 YP_004654767.1 CDS Runsl_1206 NC_015703.1 1409546 1409818 D Prodigal; manually curated; hypothetical protein 1409546..1409818 Runella slithyformis DSM 19594 10869726 YP_004654768.1 CDS Runsl_1208 NC_015703.1 1410122 1410454 R hypothetical protein complement(1410122..1410454) Runella slithyformis DSM 19594 10869728 YP_004654769.1 CDS Runsl_1209 NC_015703.1 1410567 1410971 D hypothetical protein 1410567..1410971 Runella slithyformis DSM 19594 10869729 YP_004654770.1 CDS Runsl_1210 NC_015703.1 1410987 1411211 D hypothetical protein 1410987..1411211 Runella slithyformis DSM 19594 10869730 YP_004654771.1 CDS Runsl_1211 NC_015703.1 1411208 1411327 D hypothetical protein 1411208..1411327 Runella slithyformis DSM 19594 10869731 YP_004654772.1 CDS Runsl_1212 NC_015703.1 1411321 1411590 D hypothetical protein 1411321..1411590 Runella slithyformis DSM 19594 10869732 YP_004654773.1 CDS Runsl_1213 NC_015703.1 1411556 1411753 D hypothetical protein 1411556..1411753 Runella slithyformis DSM 19594 10869733 YP_004654774.1 CDS Runsl_1214 NC_015703.1 1411750 1411974 D hypothetical protein 1411750..1411974 Runella slithyformis DSM 19594 10869734 YP_004654775.1 CDS Runsl_1215 NC_015703.1 1411961 1412239 D KEGG: rbi:RB2501_01435 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1411961..1412239 Runella slithyformis DSM 19594 10869735 YP_004654776.1 CDS Runsl_1216 NC_015703.1 1412266 1412907 D hypothetical protein 1412266..1412907 Runella slithyformis DSM 19594 10869736 YP_004654777.1 CDS Runsl_1217 NC_015703.1 1413016 1413294 D KEGG: reu:Reut_D6518 phage DNA methylase; SPTR: dna-methyltransferase; hypothetical protein 1413016..1413294 Runella slithyformis DSM 19594 10869737 YP_004654778.1 CDS Runsl_1218 NC_015703.1 1413538 1414341 D PFAM: D12 class N6 adenine-specific DNA methyltransferase; phage DNA methylase 1413538..1414341 Runella slithyformis DSM 19594 10869738 YP_004654779.1 CDS Runsl_1219 NC_015703.1 1414560 1415972 D hypothetical protein 1414560..1415972 Runella slithyformis DSM 19594 10869739 YP_004654780.1 CDS Runsl_1220 NC_015703.1 1415976 1416233 D KEGG: psn:Pedsa_0894 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1415976..1416233 Runella slithyformis DSM 19594 10869740 YP_004654781.1 CDS Runsl_1221 NC_015703.1 1416245 1416631 D COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: mea:Mex_2p0039 hypothetical protein; PFAM: DNA methylase, C-5 cytosine-specific; SPTR: Site-specific DNA methylase-like protein; hypothetical protein 1416245..1416631 Runella slithyformis DSM 19594 10869741 YP_004654782.1 CDS Runsl_1222 NC_015703.1 1416628 1417440 D PFAM: C-5 cytosine-specific DNA methylase; C-5 cytosine-specific DNA methylase 1416628..1417440 Runella slithyformis DSM 19594 10869742 YP_004654783.1 CDS Runsl_1223 NC_015703.1 1417530 1417760 D hypothetical protein 1417530..1417760 Runella slithyformis DSM 19594 10869743 YP_004654784.1 CDS Runsl_1224 NC_015703.1 1417765 1418214 D hypothetical protein 1417765..1418214 Runella slithyformis DSM 19594 10869744 YP_004654785.1 CDS Runsl_1225 NC_015703.1 1418233 1418394 D hypothetical protein 1418233..1418394 Runella slithyformis DSM 19594 10869745 YP_004654786.1 CDS Runsl_1226 NC_015703.1 1418405 1418641 D hypothetical protein 1418405..1418641 Runella slithyformis DSM 19594 10869746 YP_004654787.1 CDS Runsl_1227 NC_015703.1 1418654 1418809 D KEGG: psn:Pedsa_0863 hypothetical protein; SPTR: uncharacterized protein; manually curated; hypothetical protein 1418654..1418809 Runella slithyformis DSM 19594 10869747 YP_004654788.1 CDS Runsl_1228 NC_015703.1 1418796 1419698 D hypothetical protein 1418796..1419698 Runella slithyformis DSM 19594 10869748 YP_004654789.1 CDS Runsl_1229 NC_015703.1 1419851 1420486 D hypothetical protein 1419851..1420486 Runella slithyformis DSM 19594 10869749 YP_004654790.1 CDS Runsl_1230 NC_015703.1 1420483 1421004 D hypothetical protein 1420483..1421004 Runella slithyformis DSM 19594 10869750 YP_004654791.1 CDS Runsl_1231 NC_015703.1 1420979 1421611 D hypothetical protein 1420979..1421611 Runella slithyformis DSM 19594 10869751 YP_004654792.1 CDS Runsl_1232 NC_015703.1 1421624 1422250 D Prodigal; manually curated; hypothetical protein 1421624..1422250 Runella slithyformis DSM 19594 10869752 YP_004654793.1 CDS Runsl_1234 NC_015703.1 1422482 1422652 D KEGG: vcn:VOLCADRAFT_101335 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1422482..1422652 Runella slithyformis DSM 19594 10869754 YP_004654794.1 CDS Runsl_1235 NC_015703.1 1422766 1422912 D hypothetical protein 1422766..1422912 Runella slithyformis DSM 19594 10869755 YP_004654795.1 CDS Runsl_1236 NC_015703.1 1422939 1423346 D hypothetical protein 1422939..1423346 Runella slithyformis DSM 19594 10869756 YP_004654796.1 CDS Runsl_1237 NC_015703.1 1423348 1423962 D hypothetical protein 1423348..1423962 Runella slithyformis DSM 19594 10869757 YP_004654797.1 CDS Runsl_1238 NC_015703.1 1423991 1424353 D hypothetical protein 1423991..1424353 Runella slithyformis DSM 19594 10869758 YP_004654798.1 CDS Runsl_1239 NC_015703.1 1424353 1424700 D hypothetical protein 1424353..1424700 Runella slithyformis DSM 19594 10869759 YP_004654799.1 CDS Runsl_1240 NC_015703.1 1424702 1425010 D hypothetical protein 1424702..1425010 Runella slithyformis DSM 19594 10869760 YP_004654800.1 CDS Runsl_1241 NC_015703.1 1425045 1425671 D hypothetical protein 1425045..1425671 Runella slithyformis DSM 19594 10869761 YP_004654801.1 CDS Runsl_1242 NC_015703.1 1425749 1426465 D hypothetical protein 1425749..1426465 Runella slithyformis DSM 19594 10869762 YP_004654802.1 CDS Runsl_1243 NC_015703.1 1426440 1426985 D InterPro IPR013247; PFAM: SH3, type 3; hypothetical protein 1426440..1426985 Runella slithyformis DSM 19594 10869763 YP_004654803.1 CDS Runsl_1244 NC_015703.1 1426982 1427653 D PFAM: Bacterial SH3 domain; SH3 type 3 domain-containing protein 1426982..1427653 Runella slithyformis DSM 19594 10869764 YP_004654804.1 CDS Runsl_1245 NC_015703.1 1427650 1428075 D hypothetical protein 1427650..1428075 Runella slithyformis DSM 19594 10869765 YP_004654805.1 CDS Runsl_1246 NC_015703.1 1428077 1428259 D KEGG: sli:Slin_0588 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1428077..1428259 Runella slithyformis DSM 19594 10869766 YP_004654806.1 CDS Runsl_1247 NC_015703.1 1428316 1428840 D PFAM: Protein of unknown function (DUF3380); hypothetical protein 1428316..1428840 Runella slithyformis DSM 19594 10869767 YP_004654807.1 CDS Runsl_1248 NC_015703.1 1428971 1429078 D hypothetical protein 1428971..1429078 Runella slithyformis DSM 19594 10869768 YP_004654808.1 CDS Runsl_1249 NC_015703.1 1429078 1431291 D hypothetical protein 1429078..1431291 Runella slithyformis DSM 19594 10869769 YP_004654809.1 CDS Runsl_1250 NC_015703.1 1431301 1431549 D SPTR: uncharacterized protein; hypothetical protein 1431301..1431549 Runella slithyformis DSM 19594 10869770 YP_004654810.1 CDS Runsl_1251 NC_015703.1 1431570 1433321 D hypothetical protein 1431570..1433321 Runella slithyformis DSM 19594 10869771 YP_004654811.1 CDS Runsl_1252 NC_015703.1 1433335 1433832 D hypothetical protein 1433335..1433832 Runella slithyformis DSM 19594 10869772 YP_004654812.1 CDS Runsl_1253 NC_015703.1 1433974 1434324 D hypothetical protein 1433974..1434324 Runella slithyformis DSM 19594 10869773 YP_004654813.1 CDS Runsl_1254 NC_015703.1 1434354 1435364 D KEGG: sli:Slin_0677 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1434354..1435364 Runella slithyformis DSM 19594 10869774 YP_004654814.1 CDS Runsl_1255 NC_015703.1 1435364 1436668 D hypothetical protein 1435364..1436668 Runella slithyformis DSM 19594 10869775 YP_004654815.1 CDS Runsl_1256 NC_015703.1 1436665 1437144 D hypothetical protein 1436665..1437144 Runella slithyformis DSM 19594 10869776 YP_004654816.1 CDS Runsl_1257 NC_015703.1 1437296 1437469 D hypothetical protein 1437296..1437469 Runella slithyformis DSM 19594 10869777 YP_004654817.1 CDS Runsl_1258 NC_015703.1 1437466 1437741 D manually curated; hypothetical protein 1437466..1437741 Runella slithyformis DSM 19594 10869778 YP_004654818.1 CDS Runsl_1259 NC_015703.1 1437886 1438095 D hypothetical protein 1437886..1438095 Runella slithyformis DSM 19594 10869779 YP_004654819.1 CDS Runsl_1260 NC_015703.1 1438229 1438756 D COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: rbi:RB2501_10362 tyrosine type site-specific recombinase; PFAM: Integrase, catalytic core, phage; SPTR: Tyrosine type site-specific recombinase; hypothetical protein 1438229..1438756 Runella slithyformis DSM 19594 10869780 YP_004654820.1 CDS Runsl_1261 NC_015703.1 1438772 1439983 R PFAM: Phage integrase; integrase complement(1438772..1439983) Runella slithyformis DSM 19594 10869781 YP_004654821.1 CDS Runsl_1262 NC_015703.1 1440473 1441408 D PFAM: pfkB family carbohydrate kinase; fructokinase 1440473..1441408 Runella slithyformis DSM 19594 10869783 YP_004654822.1 CDS Runsl_1263 NC_015703.1 1441318 1441491 R KEGG: fbc:FB2170_02555 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1441318..1441491) Runella slithyformis DSM 19594 10869784 YP_004654823.1 CDS Runsl_1264 NC_015703.1 1441603 1442178 R KEGG: fbc:FB2170_02550 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1441603..1442178) Runella slithyformis DSM 19594 10869785 YP_004654824.1 CDS Runsl_1265 NC_015703.1 1442215 1443864 R InterPro IPR012910:IPR000531; KEGG: zpr:ZPR_3678 outer hypothetical protein probably involved in nutrient binding; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: outer membrane protein, probably involved in nutrient binding; hypothetical protein complement(1442215..1443864) Runella slithyformis DSM 19594 10869786 YP_004654825.1 CDS Runsl_1266 NC_015703.1 1443930 1447121 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: sli:Slin_4239 patatin; PFAM: Patatin; SPTR: Patatin; TonB-dependent receptor plug complement(1443930..1447121) Runella slithyformis DSM 19594 10869787 YP_004654826.1 CDS Runsl_1267 NC_015703.1 1447685 1448509 R PFAM: Patatin-like phospholipase; COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR005730:IPR000183; KEGG: dfe:Dfer_1153 carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Carboxynorspermidine decarboxylase; TIGRFAM: Carboxynorspermidine decarboxylase; patatin complement(1447685..1448509) Runella slithyformis DSM 19594 10869788 YP_004654827.1 CDS Runsl_1268 NC_015703.1 1448564 1449766 D PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; TIGRFAM: carboxynorspermidine decarboxylase; COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: sli:Slin_5437 BadM/Rrf2 family transcriptional regulator; PFAM: Transcriptional regulator, Rrf2; SPTR: Transcriptional regulator, BadM/Rrf2 family; TIGRFAM: Transcriptional regulator, Rrf2; carboxynorspermidine decarboxylase 1448564..1449766 Runella slithyformis DSM 19594 10869789 YP_004654828.1 CDS Runsl_1269 NC_015703.1 1449893 1450303 D PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein; COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR004602:IPR003439; KEGG: dfe:Dfer_3862 excinuclease ABC, A subunit; PFAM: ABC transporter-like; SPTR: Excinuclease ABC, A subunit; TIGRFAM: Excinuclease ABC, A subunit; BadM/Rrf2 family transcriptional regulator 1449893..1450303 Runella slithyformis DSM 19594 10869790 YP_004654829.1 CDS Runsl_1270 NC_015703.1 1450307 1453168 R PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: pdi:BDI_2050 NADH-dependent dyhydrogenase; PFAM: Oxidoreductase, N-terminal; SPTR: NADH-dependent dyhydrogenase; excinuclease ABC subunit A complement(1450307..1453168) Runella slithyformis DSM 19594 10869791 YP_004654830.1 CDS Runsl_1271 NC_015703.1 1453456 1454775 D PFAM: Oxidoreductase, NAD-binding Rossmann fold; InterPro IPR006311:IPR001258; KEGG: dfe:Dfer_4570 NHL repeat containing protein; PFAM: NHL repeat; SPTR: NHL repeat containing protein; oxidoreductase domain-containing protein 1453456..1454775 Runella slithyformis DSM 19594 10869792 YP_004654831.1 CDS Runsl_1272 NC_015703.1 1454871 1455932 D NHL repeat containing protein 1454871..1455932 Runella slithyformis DSM 19594 10869793 YP_004654832.1 CDS Runsl_1273 NC_015703.1 1456152 1456904 D COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR013751:IPR013747; KEGG: bbe:BBR47_46770 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase III; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase III; hypothetical protein 1456152..1456904 Runella slithyformis DSM 19594 10869794 YP_004654833.1 CDS Runsl_1274 NC_015703.1 1456905 1457885 R PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR012685; KEGG: bbe:BBR47_46730 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein, F390 synthetase-related; 3-ketoacyl-ACP synthase III complement(1456905..1457885) Runella slithyformis DSM 19594 10869795 YP_004654834.1 CDS Runsl_1275 NC_015703.1 1457882 1459180 R TIGRFAM: adenylate-forming enzyme; KEGG: bal:BACI_c31830 metallo-beta-lactamase superfamily protein; SPTR: Zn-dependent hydrolase GumP; adenylate-forming enzyme complement(1457882..1459180) Runella slithyformis DSM 19594 10869796 YP_004654835.1 CDS Runsl_1276 NC_015703.1 1459232 1460083 R PFAM: Metallo-beta-lactamase superfamily; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: pfo:Pfl01_4482 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: Sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating); SPTR: 3-beta hydroxysteroid dehydrogenase/isomerase; metallo-beta-lactamase superfamily protein complement(1459232..1460083) Runella slithyformis DSM 19594 10869797 YP_004654836.1 CDS Runsl_1277 NC_015703.1 1460059 1461057 R PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; Sterol-4-alpha-carboxylate 3-dehydrogenase complement(1460059..1461057) Runella slithyformis DSM 19594 10869798 YP_004654837.1 CDS Runsl_1278 NC_015703.1 1461066 1462994 R KEGG: mar:MAE_61060 hyalin repeat-containing protein; SPTR: uncharacterized protein; hypothetical protein complement(1461066..1462994) Runella slithyformis DSM 19594 10869799 YP_004654838.1 CDS Runsl_1279 NC_015703.1 1463037 1465412 R COGs: COG2819 hydrolase of the alpha/beta superfamily; InterPro IPR000801; KEGG: dfe:Dfer_4810 esterase; PFAM: esterase; SPTR: esterase; hypothetical protein complement(1463037..1465412) Runella slithyformis DSM 19594 10869800 YP_004654839.1 CDS Runsl_1280 NC_015703.1 1465524 1466621 R PFAM: esterase; esterase complement(1465524..1466621) Runella slithyformis DSM 19594 10869801 YP_004654840.1 CDS Runsl_1281 NC_015703.1 1466709 1467101 R InterPro IPR002931; KEGG: mtt:Ftrac_0150 transglutaminase domain-containing protein; PFAM: Transglutaminase-like; SPTR: Transglutaminase domain-containing protein; hypothetical protein complement(1466709..1467101) Runella slithyformis DSM 19594 10869802 YP_004654841.1 CDS Runsl_1282 NC_015703.1 1467266 1469209 D PFAM: Transglutaminase-like superfamily; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR013704:IPR006638; KEGG: sli:Slin_1403 radical SAM protein; PFAM: Radical SAM N-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: UPF0313 protein Slin_1403; transglutaminase domain-containing protein 1467266..1469209 Runella slithyformis DSM 19594 10869803 YP_004654842.1 CDS Runsl_1283 NC_015703.1 1469261 1471141 R PFAM: Radical SAM superfamily; Radical SAM N-terminal; TIGRFAM: uncharacterized radical SAM protein YgiQ; COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545:IPR001650:IPR005580:IPR014001; KEGG: sli:Slin_0250 DEAD/DEAH box helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein; radical SAM protein complement(1469261..1471141) Runella slithyformis DSM 19594 10869804 YP_004654843.1 CDS Runsl_1284 NC_015703.1 1471347 1473059 R PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase; COGs: COG2884 ATPase involved in cell division; InterPro IPR003439:IPR003593; KEGG: sli:Slin_3028 ABC transporter; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; DEAD/DEAH box helicase complement(1471347..1473059) Runella slithyformis DSM 19594 10869805 YP_004654844.1 CDS Runsl_1285 NC_015703.1 1473466 1474149 R PFAM: ABC transporter; COGs: COG0176 Transaldolase; HAMAP: transaldolase; InterPro IPR004731:IPR001585; KEGG: dfe:Dfer_5045 translaldolase; PFAM: Transaldolase; SPTR: Probable transaldolase; TIGRFAM: Transaldolase C; phosphonate-transporting ATPase complement(1473466..1474149) Runella slithyformis DSM 19594 10869806 YP_004654845.1 CDS Runsl_1286 NC_015703.1 1474245 1474901 R PFAM: Transaldolase; TIGRFAM: fructose-6-phosphate aldolase, TalC/MipB family; InterPro IPR012910:IPR000531; KEGG: mtt:Ftrac_0132 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; transaldolase complement(1474245..1474901) Runella slithyformis DSM 19594 10869807 YP_004654846.1 CDS Runsl_1287 NC_015703.1 1475207 1478212 D PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: zpr:ZPR_2448 SusD/RagB family protein; PFAM: RagB/SusD; SPTR: SusD/RagB family protein; TonB-dependent receptor plug 1475207..1478212 Runella slithyformis DSM 19594 10869808 YP_004654847.1 CDS Runsl_1288 NC_015703.1 1478231 1479739 D PFAM: SusD family; RagB/SusD domain-containing protein 1478231..1479739 Runella slithyformis DSM 19594 10869809 YP_004654848.1 CDS Runsl_1289 NC_015703.1 1479828 1480421 D InterPro IPR013519; KEGG: mtt:Ftrac_0135 fg-gap repeat protein; SPTR: FG-GAP repeat protein; hypothetical protein 1479828..1480421 Runella slithyformis DSM 19594 10869810 YP_004654849.1 CDS Runsl_1290 NC_015703.1 1480520 1483843 D PFAM: ASPIC and UnbV; FG-GAP repeat; InterPro IPR013517:IPR011519; KEGG: sli:Slin_5060 ASPIC/UnbV domain protein; PFAM: ASPIC/UnbV; FG-GAP; SPTR: ASPIC/UnbV domain protein; hypothetical protein 1480520..1483843 Runella slithyformis DSM 19594 10869811 YP_004654850.1 CDS Runsl_1291 NC_015703.1 1483953 1487393 R PFAM: ASPIC and UnbV; FG-GAP repeat; KEGG: sli:Slin_2828 hypothetical protein; SPTR: uncharacterized protein; ASPIC/UnbV domain-containing protein complement(1483953..1487393) Runella slithyformis DSM 19594 10869812 YP_004654851.1 CDS Runsl_1292 NC_015703.1 1487512 1488720 D InterPro IPR012910; KEGG: rbi:RB2501_03790 TonB-dependent outer membrane receptor protein; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent outer membrane receptor protein; hypothetical protein 1487512..1488720 Runella slithyformis DSM 19594 10869813 YP_004654852.1 CDS Runsl_1293 NC_015703.1 1488749 1491145 D PFAM: TonB-dependent Receptor Plug Domain; KEGG: pfl:PFL_6136 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 1488749..1491145 Runella slithyformis DSM 19594 10869814 YP_004654853.1 CDS Runsl_1294 NC_015703.1 1491294 1492379 D PFAM: ATP-grasp domain; KEGG: llo:LLO_0927 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1491294..1492379 Runella slithyformis DSM 19594 10869815 YP_004654854.1 CDS Runsl_1295 NC_015703.1 1492372 1493499 D COGs: COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenase large terminal subunit; InterPro IPR017941; KEGG: pfl:PFL_6138 Rieske (2Fe-2S) domain-containing protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Rieske 2Fe-2S domain protein; hypothetical protein 1492372..1493499 Runella slithyformis DSM 19594 10869816 YP_004654855.1 CDS Runsl_1296 NC_015703.1 1493489 1494463 D PFAM: Rieske [2Fe-2S] domain; Rieske (2Fe-2S) domain-containing protein 1493489..1494463 Runella slithyformis DSM 19594 10869817 YP_004654856.1 CDS Runsl_1297 NC_015703.1 1494512 1495510 D COGs: COG0557 Exoribonuclease R; InterProIPR011805:IPR004476:IPR013223:IPR001900:IPR 003029; KEGG: sli:Slin_5873 ribonuclease R; PFAM: Ribonuclease II/R; Ribonuclease B, OB region N-terminal; Ribosomal protein S1, RNA binding domain; PRIAM: Exoribonuclease II; SPTR: Ribonuclease R; TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; hypothetical protein 1494512..1495510 Runella slithyformis DSM 19594 10869818 YP_004654857.1 CDS Runsl_1298 NC_015703.1 1495545 1497905 R PFAM: RNB domain; Ribonuclease B OB domain; S1 RNA binding domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases; InterPro IPR004675:IPR003779; KEGG: zpr:ZPR_4188 carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; SPTR: Carboxymuconolactone decarboxylase; TIGRFAM: Alkylhydroperoxidase AhpD core; ribonuclease R complement(1495545..1497905) Runella slithyformis DSM 19594 10869819 YP_004654858.1 CDS Runsl_1299 NC_015703.1 1498224 1498559 D PFAM: Carboxymuconolactone decarboxylase; TIGRFAM: alkylhydroperoxidase AhpD family core domain; COGs: COG0535 Fe-S oxidoreductase; KEGG: gfo:GFO_3602 radical SAM superfamily protein; SPTR: uncharacterized protein; alkylhydroperoxidase 1498224..1498559 Runella slithyformis DSM 19594 10869820 YP_004654859.1 CDS Runsl_1300 NC_015703.1 1498654 1499718 D PFAM: Radical SAM superfamily; Protein of unknown function (DUF3641); InterPro IPR001387; KEGG: cao:Celal_0834 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix domain protein; radical SAM superfamily protein 1498654..1499718 Runella slithyformis DSM 19594 10869821 YP_004654860.1 CDS Runsl_1301 NC_015703.1 1499940 1500158 D PFAM: Helix-turn-helix; InterPro IPR017508; KEGG: cao:Celal_0835 HipA N-terminal domain protein; SPTR: Possible HipA-like protein; TIGRFAM: HipA, N-terminal; helix-turn-helix domain-containing protein 1499940..1500158 Runella slithyformis DSM 19594 10869822 YP_004654861.1 CDS Runsl_1302 NC_015703.1 1500155 1500484 D TIGRFAM: HipA N-terminal domain; COGs: COG3550 conserved hypothetical protein; InterPro IPR012894:IPR012893; KEGG: zpr:ZPR_4409 HipA-like protein; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; SPTR: HipA-like protein; HipA N-terminal domain-containing protein 1500155..1500484 Runella slithyformis DSM 19594 10869823 YP_004654862.1 CDS Runsl_1303 NC_015703.1 1500481 1501467 D PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain; KEGG: cat:CA2559_04180 hypothetical protein; SPTR: uncharacterized protein; HipA domain-containing protein 1500481..1501467 Runella slithyformis DSM 19594 10869824 YP_004654863.1 CDS Runsl_1304 NC_015703.1 1501791 1502618 R InterPro IPR001734; KEGG: cat:CA2559_04175 hypothetical protein; PFAM: Sodium/solute symporter; SPTR: uncharacterized protein; hypothetical protein complement(1501791..1502618) Runella slithyformis DSM 19594 10869825 YP_004654864.1 CDS Runsl_1305 NC_015703.1 1502615 1503958 R PFAM: Sodium:solute symporter family; KEGG: gfo:GFO_3605 hypothetical protein; SPTR: uncharacterized protein; Na+/solute symporter complement(1502615..1503958) Runella slithyformis DSM 19594 10869826 YP_004654865.1 CDS Runsl_1306 NC_015703.1 1503965 1505407 R COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: cat:CA2559_04165 outer membrane protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: Outer membrane protein; hypothetical protein complement(1503965..1505407) Runella slithyformis DSM 19594 10869827 YP_004654866.1 CDS Runsl_1307 NC_015703.1 1505444 1508683 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: fjo:Fjoh_3509 sterol desaturase-like protein; PFAM: Fatty acid hydroxylase; SPTR: Sterol desaturase-like protein; TonB-dependent receptor plug complement(1505444..1508683) Runella slithyformis DSM 19594 10869828 YP_004654867.1 CDS Runsl_1308 NC_015703.1 1508864 1510147 D PFAM: Fatty acid hydroxylase superfamily; COGs: COG3591 V8-like Glu-specific endopeptidase; KEGG: fre:Franean1_5547 peptidase S1 and S6 chymotrypsin/Hap; SPTR: Peptidase S1 and S6 chymotrypsin/Hap; fatty acid hydroxylase 1508864..1510147 Runella slithyformis DSM 19594 10869829 YP_004654868.1 CDS Runsl_1309 NC_015703.1 1510256 1511029 D COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_1007 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; hypothetical protein 1510256..1511029 Runella slithyformis DSM 19594 10869830 YP_004654869.1 CDS Runsl_1310 NC_015703.1 1511051 1511755 D PFAM: short chain dehydrogenase; COGs: COG2834 Outer membrane lipoprotein-sorting protein; InterPro IPR004564; KEGG: dfe:Dfer_3188 outer membrane lipoprotein carrier protein LolA; PFAM: Outer membrane lipoprotein carrier protein LolA; SPTR: Outer membrane lipoprotein carrier protein LolA; 3-oxoacyl-ACP reductase 1511051..1511755 Runella slithyformis DSM 19594 10869831 YP_004654870.1 CDS Runsl_1311 NC_015703.1 1511797 1512426 R PFAM: Outer membrane lipoprotein carrier protein LolA; COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543:IPR018541; KEGG: sli:Slin_5855 cell divisionFtsK/SpoIIIE; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SPTR: Cell divisionFtsK/SpoIIIE; outer membrane lipoprotein carrier protein LolA complement(1511797..1512426) Runella slithyformis DSM 19594 10869832 YP_004654871.1 CDS Runsl_1312 NC_015703.1 1512603 1515137 R PFAM: Ftsk gamma domain; FtsK/SpoIIIE family; COGs: COG0167 Dihydroorotate dehydrogenase; HAMAP: Dihydroorotate dehydrogenase; InterPro IPR005719:IPR012135; KEGG: dfe:Dfer_3190 dihydroorotate dehydrogenase 2; PFAM: Dihydroorotate dehydrogenase, class 1/ 2; PRIAM: Dihydroorotate oxidase; SPTR: Dihydroorotate dehydrogenase; TIGRFAM: Dihydroorotate dehydrogenase, class 2; DNA translocase FtsK complement(1512603..1515137) Runella slithyformis DSM 19594 10869833 YP_004654872.1 CDS Runsl_1313 NC_015703.1 1515305 1516357 R PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase, subfamily 2; KEGG: dfe:Dfer_3880 hypothetical protein; SPTR: uncharacterized protein; dihydroorotate dehydrogenase complement(1515305..1516357) Runella slithyformis DSM 19594 10869834 YP_004654873.1 CDS Runsl_1314 NC_015703.1 1516435 1518207 R COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: dfe:Dfer_3504 acyltransferase 3; PFAM: Acyltransferase 3; SPTR: Acyltransferase 3; manually curated; hypothetical protein complement(1516435..1518207) Runella slithyformis DSM 19594 10869835 YP_004654874.1 CDS Runsl_1315 NC_015703.1 1518284 1519441 D PFAM: Acyltransferase; InterPro IPR002509; KEGG: dfe:Dfer_3505 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; acyltransferase 1518284..1519441 Runella slithyformis DSM 19594 10869836 YP_004654875.1 CDS Runsl_1316 NC_015703.1 1519427 1520233 R PFAM: Polysaccharide deacetylase; COGs: COG0035 Uracil phosphoribosyltransferase; KEGG: dfe:Dfer_3881 uracil phosphoribosyltransferase; SPTR: Uracil phosphoribosyltransferase; polysaccharide deacetylase complement(1519427..1520233) Runella slithyformis DSM 19594 10869837 YP_004654876.1 CDS Runsl_1317 NC_015703.1 1520299 1521009 D PFAM: Phosphoribosyl transferase domain; TIGRFAM: uracil phosphoribosyltransferase; KEGG: dfe:Dfer_3697 barstar (barnase inhibitor); SPTR: Barstar (Barnase inhibitor); uracil phosphoribosyltransferase 1520299..1521009 Runella slithyformis DSM 19594 10869838 YP_004654877.1 CDS Runsl_1318 NC_015703.1 1521372 1521797 D PFAM: Barstar (barnase inhibitor); COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; HAMAP: Uncharacterised protein family UPF0102; InterPro IPR003509; KEGG: sli:Slin_5877 hypothetical protein; PFAM: Uncharacterised protein family UPF0102; SPTR: UPF0102 protein Slin_5877; barstar (barnase inhibitor) 1521372..1521797 Runella slithyformis DSM 19594 10869839 YP_004654878.1 CDS Runsl_1319 NC_015703.1 1521807 1522160 R PFAM: Uncharacterised protein family UPF0102; TIGRFAM: TIGR00252 family protein; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR013096:IPR000005:IPR018060; KEGG: dfe:Dfer_4301 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; Cupin 2, conserved barrel; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; hypothetical protein complement(1521807..1522160) Runella slithyformis DSM 19594 10869840 YP_004654879.1 CDS Runsl_1320 NC_015703.1 1522209 1523084 R PFAM: Cupin domain; Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; InterPro IPR006935:IPR003593; KEGG: sli:Slin_3380 ATPase AAA; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: ATPase, AAA+ type, core; SPTR: AAA ATPase; AraC family transcriptional regulator complement(1522209..1523084) Runella slithyformis DSM 19594 10869841 YP_004654880.1 CDS Runsl_1321 NC_015703.1 1523146 1525056 R PFAM: Type III restriction enzyme, res subunit; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: dfe:Dfer_4299 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; type III restriction protein res subunit complement(1523146..1525056) Runella slithyformis DSM 19594 10869842 YP_004654881.1 CDS Runsl_1322 NC_015703.1 1525267 1526106 D PFAM: Xylose isomerase-like TIM barrel; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: dfe:Dfer_4289 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; xylose isomerase domain-containing protein 1525267..1526106 Runella slithyformis DSM 19594 10869843 YP_004654882.1 CDS Runsl_1323 NC_015703.1 1526190 1527347 D PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG3828 conserved hypothetical protein; InterPro IPR013428:IPR009381:IPR000923; KEGG: dfe:Dfer_4288 membrane-bound dehydrogenase domain protein; PFAM: Blue (type 1) copper domain; Protein of unknown function DUF1037; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; oxidoreductase domain-containing protein 1526190..1527347 Runella slithyformis DSM 19594 10869844 YP_004654883.1 CDS Runsl_1324 NC_015703.1 1527377 1531150 D PFAM: Trehalose utilisation; Copper binding proteins, plastocyanin/azurin family; CARDB; TIGRFAM: membrane-bound dehydrogenase domain; COGs: COG4299 conserved hypothetical protein; InterPro IPR019259; KEGG: sli:Slin_5410 hypothetical protein; PFAM: Protein of unknown function DUF2261, transmembrane; SPTR: uncharacterized protein; membrane-bound dehydrogenase domain-containing protein 1527377..1531150 Runella slithyformis DSM 19594 10869845 YP_004654884.1 CDS Runsl_1325 NC_015703.1 1531212 1532303 R PFAM: Protein of unknown function (DUF1624); COGs: COG1858 Cytochrome c peroxidase; InterPro IPR004852; KEGG: dfe:Dfer_1545 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; PRIAM: Cytochrome-c peroxidase; SPTR: Cytochrome-c peroxidase; hypothetical protein complement(1531212..1532303) Runella slithyformis DSM 19594 10869846 YP_004654885.1 CDS Runsl_1326 NC_015703.1 1532345 1533529 R PFAM: Di-haem cytochrome c peroxidase; COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: fbc:FB2170_00745 hypothetical protein; SPTR: WD40 domain protein beta Propeller; cytochrome-c peroxidase complement(1532345..1533529) Runella slithyformis DSM 19594 10869847 YP_004654886.1 CDS Runsl_1327 NC_015703.1 1533589 1534506 R PFAM: WD40-like Beta Propeller Repeat; COGs: COG0262 Dihydrofolate reductase; InterPro IPR002734; KEGG: cpi:Cpin_6691 bifunctional deaminase-reductase domain protein; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; SPTR: Bifunctional deaminase-reductase domain protein; hypothetical protein complement(1533589..1534506) Runella slithyformis DSM 19594 10869848 YP_004654887.1 CDS Runsl_1328 NC_015703.1 1534727 1535248 R PFAM: RibD C-terminal domain; KEGG: fjo:Fjoh_1571 hypothetical protein; SPTR: uncharacterized protein; bifunctional deaminase-reductase domain-containing protein complement(1534727..1535248) Runella slithyformis DSM 19594 10869849 YP_004654888.1 CDS Runsl_1329 NC_015703.1 1535264 1535593 R PFAM: Protein of unknown function (DUF419); InterPro IPR015018; KEGG: sli:Slin_4564 hypothetical protein; PFAM: Protein of unknown function DUF1905; SPTR: uncharacterized protein; hypothetical protein complement(1535264..1535593) Runella slithyformis DSM 19594 10869850 YP_004654889.1 CDS Runsl_1330 NC_015703.1 1535657 1536166 R PFAM: Domain of unknown function (DUF1905); InterPro IPR013538; KEGG: lic:LIC10281 hypothetical protein; PFAM: Activator of Hsp90 ATPase homologue 1-like; SPTR: uncharacterized protein; hypothetical protein complement(1535657..1536166) Runella slithyformis DSM 19594 10869851 YP_004654890.1 CDS Runsl_1331 NC_015703.1 1536252 1536680 R PFAM: Activator of Hsp90 ATPase homolog 1-like protein; COGs: COG3795 conserved hypothetical protein; InterPro IPR005545; KEGG: dfe:Dfer_5356 YCII-related protein; PFAM: YCII-related; SPTR: YCII-related protein; Activator of Hsp90 ATPase 1 family protein complement(1536252..1536680) Runella slithyformis DSM 19594 10869852 YP_004654891.1 CDS Runsl_1332 NC_015703.1 1536865 1537278 D PFAM: YCII-related domain; COGs: COG4941 RNA polymerase sigma factor containing a TPR repeat domain; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_2782 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein 1536865..1537278 Runella slithyformis DSM 19594 10869853 YP_004654892.1 CDS Runsl_1333 NC_015703.1 1537288 1538538 D PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1741 Pirin-related protein; InterPro IPR003829:IPR008778; KEGG: sli:Slin_5591 pirin; PFAM: Pirin, N-terminal; Pirin, C-terminal; SPTR: Pirin domain protein; ECF subfamily RNA polymerase sigma-24 subunit 1537288..1538538 Runella slithyformis DSM 19594 10869854 YP_004654893.1 CDS Runsl_1334 NC_015703.1 1538541 1539422 R PFAM: Pirin C-terminal cupin domain; Pirin; COGs: COG0400 esterase; InterPro IPR003140; KEGG: cpi:Cpin_5017 phospholipase/carboxylesterase; PFAM: Phospholipase/carboxylesterase; SPTR: Phospholipase/Carboxylesterase; pirin complement(1538541..1539422) Runella slithyformis DSM 19594 10869855 YP_004654894.1 CDS Runsl_1335 NC_015703.1 1539419 1540045 R PFAM: Phospholipase/Carboxylesterase; COGs: COG0346 Lactoylglutathione lyase and related lyase; InterPro IPR004360; KEGG: sli:Slin_5510 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxylase; phospholipase/carboxylesterase complement(1539419..1540045) Runella slithyformis DSM 19594 10869856 YP_004654895.1 CDS Runsl_1336 NC_015703.1 1540097 1541074 R PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; InterPro IPR000835:IPR000182; KEGG: fjo:Fjoh_4320 MarR family transcriptional regulator; PFAM: GCN5-related N-acetyltransferase; HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; Glyoxalase/bleomycin resistance protein/dioxygenase complement(1540097..1541074) Runella slithyformis DSM 19594 10869857 YP_004654896.1 CDS Runsl_1337 NC_015703.1 1541512 1542465 D PFAM: Acetyltransferase (GNAT) family; InterPro IPR004360; KEGG: sti:Sthe_3215 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; N-acetyltransferase GCN5 1541512..1542465 Runella slithyformis DSM 19594 10869858 YP_004654897.1 CDS Runsl_1338 NC_015703.1 1542506 1543462 R PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: ppn:Palpr_0322 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: transcriptional regulator; Glyoxalase/bleomycin resistance protein/dioxygenase complement(1542506..1543462) Runella slithyformis DSM 19594 10869859 YP_004654898.1 CDS Runsl_1339 NC_015703.1 1543577 1544449 R PFAM: AraC-like ligand binding domain; KEGG: ava:Ava_4034 PilT protein-like protein; SPTR: PilT protein-like protein; AraC family transcriptional regulator complement(1543577..1544449) Runella slithyformis DSM 19594 10869860 YP_004654899.1 CDS Runsl_1340 NC_015703.1 1544504 1545115 R COGs: COG2255 Holliday junction resolvasome helicase subunit; HAMAP: DNA helicase, Holliday junction RuvB type; InterProIPR004605:IPR008824:IPR003959:IPR008823:IPR 003593; KEGG: dfe:Dfer_3690 Holliday junction DNA helicase RuvB; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: Holliday junction ATP-dependent DNA helicase ruvB; TIGRFAM: DNA helicase, Holliday junction RuvB type; hypothetical protein complement(1544504..1545115) Runella slithyformis DSM 19594 10869861 YP_004654900.1 CDS Runsl_1341 NC_015703.1 1545248 1546261 R PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit; KEGG: sli:Slin_4186 hypothetical protein; SPTR: uncharacterized protein; Holliday junction DNA helicase subunit RuvB complement(1545248..1546261) Runella slithyformis DSM 19594 10869862 YP_004654901.1 CDS Runsl_1342 NC_015703.1 1546400 1547086 D hypothetical protein 1546400..1547086 Runella slithyformis DSM 19594 10869863 YP_004654902.1 CDS Runsl_1343 NC_015703.1 1547363 1547533 D KEGG: sli:Slin_6908 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1547363..1547533 Runella slithyformis DSM 19594 10869864 YP_004654903.1 CDS Runsl_1344 NC_015703.1 1547530 1548204 D hypothetical protein 1547530..1548204 Runella slithyformis DSM 19594 10869865 YP_004654904.1 CDS Runsl_1345 NC_015703.1 1548161 1548388 D KEGG: sli:Slin_4185 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1548161..1548388 Runella slithyformis DSM 19594 10869866 YP_004654905.1 CDS Runsl_1346 NC_015703.1 1548487 1548966 R hypothetical protein complement(1548487..1548966) Runella slithyformis DSM 19594 10869867 YP_004654906.1 CDS Runsl_1347 NC_015703.1 1549090 1549668 D PFAM: Ndr family; hypothetical protein 1549090..1549668 Runella slithyformis DSM 19594 10869868 YP_004654907.1 CDS Runsl_1348 NC_015703.1 1549876 1550346 R hypothetical protein complement(1549876..1550346) Runella slithyformis DSM 19594 10869869 YP_004654908.1 CDS Runsl_1349 NC_015703.1 1550525 1550887 R hypothetical protein complement(1550525..1550887) Runella slithyformis DSM 19594 10869870 YP_004654909.1 CDS Runsl_1350 NC_015703.1 1551057 1551314 R hypothetical protein complement(1551057..1551314) Runella slithyformis DSM 19594 10869871 YP_004654910.1 CDS Runsl_1351 NC_015703.1 1551327 1551509 R COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: rmr:Rmar_0728 OmpA/MotB domain-containing protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; hypothetical protein complement(1551327..1551509) Runella slithyformis DSM 19594 10869872 YP_004654911.1 CDS Runsl_1352 NC_015703.1 1551531 1552235 R PFAM: OmpA family; COGs: COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); InterPro IPR008331; KEGG: cyc:PCC7424_1076 ferritin Dps family protein; PFAM: Ferritin/Dps protein; SPTR: Ferritin Dps family protein; OmpA/MotB domain-containing protein complement(1551531..1552235) Runella slithyformis DSM 19594 10869873 YP_004654912.1 CDS Runsl_1353 NC_015703.1 1552246 1552713 R PFAM: Ferritin-like domain; ferritin complement(1552246..1552713) Runella slithyformis DSM 19594 10869874 YP_004654913.1 CDS Runsl_1354 NC_015703.1 1552868 1553047 R KEGG: cpi:Cpin_1932 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1552868..1553047) Runella slithyformis DSM 19594 10869875 YP_004654914.1 CDS Runsl_1355 NC_015703.1 1553198 1553350 R manually curated; hypothetical protein complement(1553198..1553350) Runella slithyformis DSM 19594 10869876 YP_004654915.1 CDS Runsl_1357 NC_015703.1 1553723 1554598 D COGs: COG3852 Signal transduction histidine kinase nitrogen specific; InterProIPR000014:IPR001789:IPR013767:IPR003661:IPR 003594; KEGG: dfe:Dfer_2748 signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; PAS fold; SMART: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS; hypothetical protein 1553723..1554598 Runella slithyformis DSM 19594 10869878 YP_004654916.1 CDS Runsl_1358 NC_015703.1 1554669 1556126 R PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789; KEGG: amr:AM1_1726 response regulator; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator; signal transduction histidine kinase, nitrogen specific, NtrB complement(1554669..1556126) Runella slithyformis DSM 19594 10869879 YP_004654917.1 CDS Runsl_1359 NC_015703.1 1556126 1556596 R PFAM: Response regulator receiver domain; COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR000014:IPR013655:IPR003661:IPR003594:IPR 001610; KEGG: sli:Slin_4322 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-3; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAC motif; SPTR: PAS fold family; TIGRFAM: PAS; response regulator receiver protein complement(1556126..1556596) Runella slithyformis DSM 19594 10869880 YP_004654918.1 CDS Runsl_1360 NC_015703.1 1556664 1558250 R PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR002078:IPR002197:IPR003593; KEGG: dfe:Dfer_2749 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family; PAS/PAC sensor signal transduction histidine kinase complement(1556664..1558250) Runella slithyformis DSM 19594 10869881 YP_004654919.1 CDS Runsl_1361 NC_015703.1 1558250 1559725 R PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR000394:IPR007046:IPR007634; KEGG: dfe:Dfer_2750 RNA polymerase, sigma 54 subunit, RpoN; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54; SPTR: RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma factor 54; Fis family transcriptional regulator complement(1558250..1559725) Runella slithyformis DSM 19594 10869882 YP_004654920.1 CDS Runsl_1362 NC_015703.1 1559866 1561299 R PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54, DNA binding domain; Sigma-54 factor, core binding domain; TIGRFAM: RNA polymerase sigma-54 factor; COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR007891:IPR003661:IPR003594; KEGG: sli:Slin_2719 histidine kinase; PFAM: CHASE3; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase; RNA polymerase sigma 54 subunit RpoN complement(1559866..1561299) Runella slithyformis DSM 19594 10869883 YP_004654921.1 CDS Runsl_1363 NC_015703.1 1561550 1562944 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; CHASE3 domain; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789; KEGG: lic:LIC11201 response regulator; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator Rcp1; integral membrane sensor signal transduction histidine kinase 1561550..1562944 Runella slithyformis DSM 19594 10869884 YP_004654922.1 CDS Runsl_1364 NC_015703.1 1562977 1563423 D PFAM: Response regulator receiver domain; response regulator receiver protein 1562977..1563423 Runella slithyformis DSM 19594 10869885 YP_004654923.1 CDS Runsl_1365 NC_015703.1 1563416 1563919 R KEGG: psn:Pedsa_2779 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1563416..1563919) Runella slithyformis DSM 19594 10869886 YP_004654924.1 CDS Runsl_1366 NC_015703.1 1563909 1564274 R PFAM: Protein of unknown function (DUF1469); KEGG: wvi:Weevi_1691 hypothetical protein; SPTR: Aspartyl-tRNA synthetase; hypothetical protein complement(1563909..1564274) Runella slithyformis DSM 19594 10869887 YP_004654925.1 CDS Runsl_1367 NC_015703.1 1564341 1564652 R COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: cpi:Cpin_2890 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; hypothetical protein complement(1564341..1564652) Runella slithyformis DSM 19594 10869888 YP_004654926.1 CDS Runsl_1368 NC_015703.1 1564900 1565265 D PFAM: Response regulator receiver domain; KEGG: ckp:ckrop_0034 hypothetical protein; SPTR: uncharacterized protein; response regulator receiver protein 1564900..1565265 Runella slithyformis DSM 19594 10869889 YP_004654927.1 CDS Runsl_1369 NC_015703.1 1565615 1565932 R hypothetical protein complement(1565615..1565932) Runella slithyformis DSM 19594 10869890 YP_004654928.1 CDS Runsl_1370 NC_015703.1 1565963 1566223 R InterPro IPR011971:IPR019052; KEGG: dfe:Dfer_3187 hypothetical protein; PFAM: Protein of unknown function DUF2383; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02284; hypothetical protein complement(1565963..1566223) Runella slithyformis DSM 19594 10869891 YP_004654929.1 CDS Runsl_1371 NC_015703.1 1566380 1566913 D PFAM: Domain of unknown function (DUF2383); TIGRFAM: conserved hypothetical protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_3071 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein 1566380..1566913 Runella slithyformis DSM 19594 10869892 YP_004654930.1 CDS Runsl_1372 NC_015703.1 1566972 1567541 D PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931; KEGG: dfe:Dfer_4408 transglutaminase domain protein; PFAM: Transglutaminase-like; SMART: Transglutaminase-like; SPTR: Transglutaminase domain protein; ECF subfamily RNA polymerase sigma-24 subunit 1566972..1567541 Runella slithyformis DSM 19594 10869893 YP_004654931.1 CDS Runsl_1373 NC_015703.1 1567643 1568437 R PFAM: Transglutaminase-like superfamily; transglutaminase domain-containing protein complement(1567643..1568437) Runella slithyformis DSM 19594 10869894 YP_004654932.1 CDS Runsl_1374 NC_015703.1 1568517 1568909 R KEGG: lby:Lbys_2890 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1568517..1568909) Runella slithyformis DSM 19594 10869895 YP_004654933.1 CDS Runsl_1375 NC_015703.1 1569017 1569475 R COGs: COG0296 1 4-alpha-glucan branching enzyme; InterPro IPR004193:IPR006047:IPR006048:IPR006589; KEGG: dfe:Dfer_0213 glycoside hydrolase 13 domain protein; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic region; Alpha-amylase, C-terminal all beta; PRIAM: 1,4-alpha-glucan branching enzyme; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; SPTR: Maltooligosyl trehalose hydrolase; hypothetical protein complement(1569017..1569475) Runella slithyformis DSM 19594 10869896 YP_004654934.1 CDS Runsl_1376 NC_015703.1 1569507 1571321 R PFAM: Alpha amylase, C-terminal all-beta domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain; TIGRFAM: alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase; malto-oligosyltrehalose trehalohydrolase; COGs: COG0628 permease; InterPro IPR002549; KEGG: dfe:Dfer_4013 protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; SPTR: uncharacterized protein; 1,4-alpha-glucan-branching protein complement(1569507..1571321) Runella slithyformis DSM 19594 10869897 YP_004654935.1 CDS Runsl_1377 NC_015703.1 1571478 1572671 R PFAM: Domain of unknown function DUF20; KEGG: ava:Ava_4160 VCBS; SPTR: VCBS; hypothetical protein complement(1571478..1572671) Runella slithyformis DSM 19594 10869898 YP_004654936.1 CDS Runsl_1378 NC_015703.1 1572821 1573084 D KEGG: dfe:Dfer_2635 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1572821..1573084 Runella slithyformis DSM 19594 10869899 YP_004654937.1 CDS Runsl_1379 NC_015703.1 1573246 1573905 R hypothetical protein complement(1573246..1573905) Runella slithyformis DSM 19594 10869900 YP_004654938.1 CDS Runsl_1380 NC_015703.1 1573966 1574136 D COGs: COG3828 conserved hypothetical protein; KEGG: sli:Slin_3440 PKD domain containing protein; SPTR: PKD domain containing protein; hypothetical protein 1573966..1574136 Runella slithyformis DSM 19594 10869901 YP_004654939.1 CDS Runsl_1381 NC_015703.1 1574065 1574826 R PFAM: Trehalose utilisation; InterPro IPR006694; KEGG: sli:Slin_5702 fatty acid hydroxylase; PFAM: Fatty acid hydroxylase; SPTR: Fatty acid hydroxylase; PKD domain-containing protein complement(1574065..1574826) Runella slithyformis DSM 19594 10869902 YP_004654940.1 CDS Runsl_1382 NC_015703.1 1574926 1575498 R PFAM: Fatty acid hydroxylase superfamily; COGs: COG1164 Oligoendopeptidase F; InterPro IPR011976:IPR001567; KEGG: sli:Slin_5185 oligoendopeptidase, M3 family; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; SPTR: Oligoendopeptidase, M3 family; TIGRFAM: Peptidase M3B, oligoendopeptidase-related clade 2; fatty acid hydroxylase complement(1574926..1575498) Runella slithyformis DSM 19594 10869903 YP_004654941.1 CDS Runsl_1383 NC_015703.1 1575514 1577238 D PFAM: Peptidase M3; TIGRFAM: oligoendopeptidase, M3 family; InterPro IPR019298; KEGG: sli:Slin_0320 hypothetical protein; PFAM: Nucleotide-binding protein, PIN domain; SPTR: uncharacterized protein; oligoendopeptidase 1575514..1577238 Runella slithyformis DSM 19594 10869904 YP_004654942.1 CDS Runsl_1384 NC_015703.1 1577278 1577700 R PFAM: Predicted nucleotide-binding protein, containing PIN domain; Nucleotide-binding protein, PIN domain-containing protein complement(1577278..1577700) Runella slithyformis DSM 19594 10869905 YP_004654943.1 CDS Runsl_1385 NC_015703.1 1577697 1577927 R COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: sli:Slin_6038 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28; hypothetical protein complement(1577697..1577927) Runella slithyformis DSM 19594 10869906 YP_004654944.1 CDS Runsl_1386 NC_015703.1 1577999 1579435 D PFAM: PA domain; Peptidase M28; InterPro IPR006311:IPR010869; KEGG: dfe:Dfer_3701 protein of unknown function DUF1501; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein; peptidase M28 1577999..1579435 Runella slithyformis DSM 19594 10869907 YP_004654945.1 CDS Runsl_1387 NC_015703.1 1579577 1581070 R PFAM: Protein of unknown function (DUF1501); InterPro IPR005804; KEGG: mtt:Ftrac_0880 alkane 1-monooxygenase; PFAM: Fatty acid desaturase, type 1; PRIAM: Alkane 1-monooxygenase; SPTR: Alkane 1-monooxygenase; hypothetical protein complement(1579577..1581070) Runella slithyformis DSM 19594 10869908 YP_004654946.1 CDS Runsl_1388 NC_015703.1 1581128 1582273 R PFAM: Fatty acid desaturase; KEGG: sli:Slin_0424 hypothetical protein; SPTR: uncharacterized protein; alkane 1-monooxygenase complement(1581128..1582273) Runella slithyformis DSM 19594 10869909 YP_004654947.1 CDS Runsl_1389 NC_015703.1 1582465 1583214 D KEGG: sli:Slin_0423 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1582465..1583214 Runella slithyformis DSM 19594 10869910 YP_004654948.1 CDS Runsl_1390 NC_015703.1 1583236 1583649 D PFAM: Protein of unknown function (DUF2846); COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_0422 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; hypothetical protein 1583236..1583649 Runella slithyformis DSM 19594 10869911 YP_004654949.1 CDS Runsl_1391 NC_015703.1 1583646 1584662 D PFAM: Histidine kinase; signal transduction histidine kinase 1583646..1584662 Runella slithyformis DSM 19594 10869912 YP_004654950.1 CDS Runsl_1392 NC_015703.1 1584718 1584915 D KEGG: sli:Slin_5138 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1584718..1584915 Runella slithyformis DSM 19594 10869913 YP_004654951.1 CDS Runsl_1393 NC_015703.1 1584881 1585396 D COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_0421 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; hypothetical protein 1584881..1585396 Runella slithyformis DSM 19594 10869914 YP_004654952.1 CDS Runsl_1394 NC_015703.1 1585400 1586077 D PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: dfe:Dfer_5692 protein of unknown function DUF433; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein; LytTR family two component transcriptional regulator 1585400..1586077 Runella slithyformis DSM 19594 10869915 YP_004654953.1 CDS Runsl_1395 NC_015703.1 1586105 1586347 R PFAM: Protein of unknown function (DUF433); COGs: COG0415 Deoxyribodipyrimidine photolyase; InterPro IPR006050:IPR005101; KEGG: sli:Slin_0029 deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal; PRIAM: Deoxyribodipyrimidine photo-lyase; SPTR: Deoxyribodipyrimidine photo-lyase; hypothetical protein complement(1586105..1586347) Runella slithyformis DSM 19594 10869916 YP_004654954.1 CDS Runsl_1396 NC_015703.1 1586399 1587709 R PFAM: FAD binding domain of DNA photolyase; DNA photolyase; COGs: COG3448 CBS-domain-containing membrane protein; InterPro IPR000644; KEGG: fjo:Fjoh_1068 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; SPTR: CBS domain containing protein; deoxyribodipyrimidine photo-lyase complement(1586399..1587709) Runella slithyformis DSM 19594 10869917 YP_004654955.1 CDS Runsl_1397 NC_015703.1 1587769 1588185 R PFAM: CBS domain; COGs: COG1003 Glycine cleavage system protein P (pyridoxal-binding) C-terminal domain; HAMAP: Glycine cleavage system P-protein; InterPro IPR003437:IPR020580; KEGG: dfe:Dfer_4078 glycine dehydrogenase; PFAM: Glycine cleavage system P-protein, N-terminal; SPTR: Glycine dehydrogenase [decarboxylating]; TIGRFAM: Glycine cleavage system P-protein; hypothetical protein complement(1587769..1588185) Runella slithyformis DSM 19594 10869918 YP_004654956.1 CDS Runsl_1398 NC_015703.1 1588363 1591275 R PFAM: Glycine cleavage system P-protein; TIGRFAM: glycine dehydrogenase (decarboxylating); COGs: COG3664 Beta-xylosidase; InterPro IPR000514; KEGG: dfe:Dfer_5268 glycoside hydrolase 39; PFAM: Glycoside hydrolase, family 39; PRIAM: Xylan 1,4-beta-xylosidase; SPTR: Glycoside hydrolase 39; glycine dehydrogenase complement(1588363..1591275) Runella slithyformis DSM 19594 10869919 YP_004654957.1 CDS Runsl_1399 NC_015703.1 1591700 1593379 D PFAM: Glycosyl hydrolases family 39; COGs: COG2368 Aromatic ring hydroxylase; InterPro IPR004925; KEGG: nmr:Nmar_0207 vinylacetyl-CoA delta-isomerase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase; PRIAM: Vinylacetyl-CoA Delta-isomerase; SPTR: 4-hydroxyphenylacetate 3-hydroxylase; xylan 1,4-beta-xylosidase 1591700..1593379 Runella slithyformis DSM 19594 10869920 YP_004654958.1 CDS Runsl_1400 NC_015703.1 1593476 1594993 R PFAM: 4-hydroxyphenylacetate 3-hydroxylase N terminal; 4-hydroxyphenylacetate 3-hydroxylase C terminal; COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: dal:Dalk_1293 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR: Enoyl-CoA hydratase/isomerase; Vinylacetyl-CoA Delta-isomerase complement(1593476..1594993) Runella slithyformis DSM 19594 10869921 YP_004654959.1 CDS Runsl_1401 NC_015703.1 1595073 1595828 R PFAM: Enoyl-CoA hydratase/isomerase; COGs: COG1257 Hydroxymethylglutaryl-CoA reductase; InterPro IPR002202; KEGG: gpb:HDN1F_32470 similar to hydroxymethylglutaryl-CoA reductase (NADPH); PFAM: Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic; PRIAM: Hydroxymethylglutaryl-CoA reductase (NADPH); SPTR: Similar to hydroxymethylglutaryl-CoA reductase (NADPH); enoyl-CoA hydratase complement(1595073..1595828) Runella slithyformis DSM 19594 10869922 YP_004654960.1 CDS Runsl_1402 NC_015703.1 1595877 1597163 R PFAM: Hydroxymethylglutaryl-coenzyme A reductase; TIGRFAM: 3-hydroxy-3-methylglutaryl Coenzyme A reductase, hydroxymethylglutaryl-CoA reductase (NADP); COGs: COG3384 conserved hypothetical protein; InterPro IPR004183; KEGG: cpi:Cpin_4445 extradiol ring-cleavage dioxygenase class III protein subunit B; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; SPTR: Extradiol ring-cleavage dioxygenase class III protein subunit B; hydroxymethylglutaryl-CoA reductase (NADPH) complement(1595877..1597163) Runella slithyformis DSM 19594 10869923 YP_004654961.1 CDS Runsl_1403 NC_015703.1 1597182 1598144 R PFAM: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro IPR010720; KEGG: dfe:Dfer_1570 hypothetical protein; SMART: Alpha-L-arabinofuranosidase, C-terminal; SPTR: uncharacterized protein; extradiol ring-cleavage dioxygenase class III protein subunit B complement(1597182..1598144) Runella slithyformis DSM 19594 10869924 YP_004654962.1 CDS Runsl_1404 NC_015703.1 1598253 1600133 D COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: sli:Slin_0234 aldo/keto reductase; PFAM: Aldo/keto reductase; SPTR: Aldo/keto reductase; alpha-L-arabinofuranosidase 1598253..1600133 Runella slithyformis DSM 19594 10869925 YP_004654963.1 CDS Runsl_1405 NC_015703.1 1600196 1601182 D PFAM: Aldo/keto reductase; COGs: COG3254 conserved hypothetical protein; HAMAP: L-rhamnose 1-epimerase; InterPro IPR013448:IPR008000; KEGG: sli:Slin_1807 L-rhamnose 1-epimerase; PFAM: Rhamnose mutarotase; SPTR: L-rhamnose 1-epimerase; TIGRFAM: L-rhamnose 1-epimerase; aldo/keto reductase 1600196..1601182 Runella slithyformis DSM 19594 10869926 YP_004654964.1 CDS Runsl_1406 NC_015703.1 1601212 1601598 D PFAM: Domain of unknown function (DUF718); TIGRFAM: L-rhamnose 1-epimerase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683:IPR004104; KEGG: fbc:FB2170_00605 hypothetical protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: uncharacterized protein; L-rhamnose mutarotase 1601212..1601598 Runella slithyformis DSM 19594 10869927 YP_004654965.1 CDS Runsl_1407 NC_015703.1 1601648 1602997 D PFAM: Oxidoreductase, C-terminal alpha/beta domain; Oxidoreductase, NAD-binding Rossmann fold; InterPro IPR006869; KEGG: cao:Celal_0940 hypothetical protein; PFAM: Protein of unknown function DUF547; SPTR: uncharacterized protein; oxidoreductase domain-containing protein 1601648..1602997 Runella slithyformis DSM 19594 10869928 YP_004654966.1 CDS Runsl_1408 NC_015703.1 1603046 1603804 R PFAM: Protein of unknown function, DUF547; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_3075 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; hypothetical protein complement(1603046..1603804) Runella slithyformis DSM 19594 10869929 YP_004654967.1 CDS Runsl_1409 NC_015703.1 1603986 1604774 D PFAM: short chain dehydrogenase; COGs: COG2030 Acyl dehydratase; InterPro IPR002539; KEGG: sli:Slin_3533 MaoC domain protein dehydratase; PFAM: MaoC-like dehydratase; SPTR: MaoC domain protein dehydratase; 3-oxoacyl-ACP reductase 1603986..1604774 Runella slithyformis DSM 19594 10869930 YP_004654968.1 CDS Runsl_1410 NC_015703.1 1604915 1605322 D PFAM: MaoC like domain; COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; HAMAP: Maf-like protein; InterPro IPR003697; KEGG: dfe:Dfer_2424 maf protein; PFAM: Maf-like protein; SPTR: Maf-like protein Dfer_2424; TIGRFAM: Maf-like protein; acyl dehydratase MaoC 1604915..1605322 Runella slithyformis DSM 19594 10869931 YP_004654969.1 CDS Runsl_1411 NC_015703.1 1605332 1605910 D PFAM: Maf-like protein; TIGRFAM: MAF protein; KEGG: sli:Slin_0715 hypothetical protein; SPTR: uncharacterized protein; septum formation protein Maf 1605332..1605910 Runella slithyformis DSM 19594 10869932 YP_004654970.1 CDS Runsl_1412 NC_015703.1 1606034 1606813 D KEGG: mtt:Ftrac_3362 hypothetical protein; SPTR: Membrane protein; hypothetical protein 1606034..1606813 Runella slithyformis DSM 19594 10869933 YP_004654971.1 CDS Runsl_1413 NC_015703.1 1606810 1608174 R PFAM: Protein of unknown function (DUF2029); HAMAP: 50S ribosomal protein L34; InterPro IPR000271; KEGG: dfe:Dfer_3852 ribosomal protein L34; PFAM: Ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: Ribosomal protein L34; hypothetical protein complement(1606810..1608174) Runella slithyformis DSM 19594 10869934 YP_004654972.1 CDS Runsl_1414 NC_015703.1 1608348 1608506 D PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; HAMAP: Ribonuclease P; InterPro IPR000100; KEGG: dfe:Dfer_3851 ribonuclease P protein component; SPTR: Ribonuclease P protein component; TIGRFAM: Ribonuclease P; 50S ribosomal protein L34 1608348..1608506 Runella slithyformis DSM 19594 10869935 YP_004654973.1 CDS Runsl_1415 NC_015703.1 1608590 1608997 D PFAM: Ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: sli:Slin_5611 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family; ribonuclease P protein component 1608590..1608997 Runella slithyformis DSM 19594 10869936 YP_004654974.1 CDS Runsl_1416 NC_015703.1 1609162 1609863 D PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; HAMAP: NAD(P)H-quinone oxidoreductase subunit H; InterPro IPR001135; KEGG: dfe:Dfer_3733 NADH dehydrogenase (quinone); PFAM: NADH-quinone oxidoreductase, subunit D; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH dehydrogenase (Quinone); winged helix family two component transcriptional regulator 1609162..1609863 Runella slithyformis DSM 19594 10869937 YP_004654975.1 CDS Runsl_1417 NC_015703.1 1609943 1611163 R PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; NAD(P)H-quinone oxidoreductase subunit H complement(1609943..1611163) Runella slithyformis DSM 19594 10869938 YP_004654976.1 CDS Runsl_1418 NC_015703.1 1611353 1611511 D COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047:IPR013247; KEGG: sli:Slin_6234 peptidase M23; PFAM: Peptidase M23; SH3, type 3; SPTR: Peptidase M23; hypothetical protein 1611353..1611511 Runella slithyformis DSM 19594 10869939 YP_004654977.1 CDS Runsl_1419 NC_015703.1 1611508 1612863 D PFAM: Peptidase M23; Bacterial SH3 domain; KEGG: dfe:Dfer_3230 hypothetical protein; SPTR: uncharacterized protein; peptidase M23 1611508..1612863 Runella slithyformis DSM 19594 10869940 YP_004654978.1 CDS Runsl_1420 NC_015703.1 1613014 1613580 D COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3424 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; manually curated; hypothetical protein 1613014..1613580 Runella slithyformis DSM 19594 10869941 YP_004654979.1 CDS Runsl_1421 NC_015703.1 1613653 1616094 R PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; COGs: COG0671 Membrane-associated phospholipid phosphatase; InterPro IPR000326; KEGG: ppn:Palpr_2396 phosphoesterase pa-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: Phosphoesterase PA-phosphatase related protein; TonB-dependent receptor complement(1613653..1616094) Runella slithyformis DSM 19594 10869942 YP_004654980.1 CDS Runsl_1422 NC_015703.1 1616269 1616877 R PFAM: PAP2 superfamily; InterPro IPR002781; KEGG: chu:CHU_0807 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: uncharacterized protein; phosphoesterase PA-phosphatase-like protein complement(1616269..1616877) Runella slithyformis DSM 19594 10869943 YP_004654981.1 CDS Runsl_1423 NC_015703.1 1616903 1617628 R PFAM: Sulfite exporter TauE/SafE; COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: sli:Slin_6105 hypothetical protein; PFAM: Protein of unknown function DUF58; SPTR: uncharacterized protein; hypothetical protein complement(1616903..1617628) Runella slithyformis DSM 19594 10869944 YP_004654982.1 CDS Runsl_1424 NC_015703.1 1617687 1618556 R PFAM: Protein of unknown function DUF58; KEGG: dfe:Dfer_3843 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1617687..1618556) Runella slithyformis DSM 19594 10869945 YP_004654983.1 CDS Runsl_1425 NC_015703.1 1618601 1618960 D KEGG: sli:Slin_6086 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1618601..1618960 Runella slithyformis DSM 19594 10869946 YP_004654984.1 CDS Runsl_1426 NC_015703.1 1618962 1619510 D COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: dfe:Dfer_3384 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR; hypothetical protein 1618962..1619510 Runella slithyformis DSM 19594 10869947 YP_004654985.1 CDS Runsl_1427 NC_015703.1 1619564 1619956 R PFAM: Biopolymer transport protein ExbD/TolR; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: dfe:Dfer_3385 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB proton channel; biopolymer transport protein ExbD/TolR complement(1619564..1619956) Runella slithyformis DSM 19594 10869948 YP_004654986.1 CDS Runsl_1428 NC_015703.1 1619983 1620672 R PFAM: MotA/TolQ/ExbB proton channel family; COGs: COG4111 conserved hypothetical protein; InterPro IPR000086; KEGG: cpi:Cpin_6951 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: uncharacterized protein; MotA/TolQ/ExbB proton channel complement(1619983..1620672) Runella slithyformis DSM 19594 10869949 YP_004654987.1 CDS Runsl_1429 NC_015703.1 1620900 1621658 D PFAM: NUDIX domain; KEGG: sli:Slin_2853 hypothetical protein; SPTR: uncharacterized protein; NUDIX hydrolase 1620900..1621658 Runella slithyformis DSM 19594 10869950 YP_004654988.1 CDS Runsl_1430 NC_015703.1 1621662 1622153 R COGs: COG0405 Gamma-glutamyltransferase; InterPro IPR000101; KEGG: dfe:Dfer_3938 gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase; PRIAM: Gamma-glutamyltransferase; SPTR: Gamma-glutamyltransferase; TIGRFAM: Gamma-glutamyltranspeptidase; hypothetical protein complement(1621662..1622153) Runella slithyformis DSM 19594 10869951 YP_004654989.1 CDS Runsl_1431 NC_015703.1 1622258 1624015 D PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dfe:Dfer_3991 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; gamma-glutamyltransferase 1622258..1624015 Runella slithyformis DSM 19594 10869952 YP_004654990.1 CDS Runsl_1432 NC_015703.1 1624025 1624804 D PFAM: alpha/beta hydrolase fold; InterPro IPR015414; KEGG: dfe:Dfer_3984 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein; SPTR: SNARE associated Golgi protein; alpha/beta hydrolase 1624025..1624804 Runella slithyformis DSM 19594 10869953 YP_004654991.1 CDS Runsl_1433 NC_015703.1 1624808 1625473 R PFAM: SNARE associated Golgi protein; COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR001001; KEGG: dfe:Dfer_3720 DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; PRIAM: DNA-directed DNA polymerase; SMART: DNA polymerase III, beta chain; SPTR: DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta chain; hypothetical protein complement(1624808..1625473) Runella slithyformis DSM 19594 10869954 YP_004654992.1 CDS Runsl_1434 NC_015703.1 1625544 1626671 R PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit; COGs: COG0082 Chorismate synthase; InterPro IPR000453; KEGG: dfe:Dfer_4064 chorismate synthase; PFAM: Chorismate synthase; PRIAM: Chorismate synthase; SPTR: Chorismate synthase; TIGRFAM: Chorismate synthase; DNA polymerase III subunit beta complement(1625544..1626671) Runella slithyformis DSM 19594 10869955 YP_004654993.1 CDS Runsl_1435 NC_015703.1 1626728 1627810 R PFAM: Chorismate synthase; TIGRFAM: chorismate synthase; KEGG: dfe:Dfer_4063 hypothetical protein; SPTR: uncharacterized protein; chorismate synthase complement(1626728..1627810) Runella slithyformis DSM 19594 10869956 YP_004654994.1 CDS Runsl_1436 NC_015703.1 1627810 1629225 R KEGG: dfe:Dfer_4062 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1627810..1629225) Runella slithyformis DSM 19594 10869957 YP_004654995.1 CDS Runsl_1437 NC_015703.1 1629339 1629545 D InterPro IPR013105:IPR001440:IPR019734; KEGG: dfe:Dfer_4061 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; SPTR: Tetratricopeptide TPR_2 repeat protein; hypothetical protein 1629339..1629545 Runella slithyformis DSM 19594 10869958 YP_004654996.1 CDS Runsl_1438 NC_015703.1 1629617 1631386 R COGs: COG0226 ABC-type phosphate transport system periplasmic component; KEGG: sli:Slin_5092 ABC-type phosphate transporter periplasmic component-like protein; SPTR: ABC-type phosphate transport system periplasmic component-like protein; hypothetical protein complement(1629617..1631386) Runella slithyformis DSM 19594 10869959 YP_004654997.1 CDS Runsl_1439 NC_015703.1 1631483 1632454 R KEGG: sli:Slin_5091 hypothetical protein; SPTR: uncharacterized protein; ABC-type phosphate transporter periplasmic component-like protein complement(1631483..1632454) Runella slithyformis DSM 19594 10869960 YP_004654998.1 CDS Runsl_1440 NC_015703.1 1632399 1632617 R InterPro IPR006260:IPR003538; KEGG: sli:Slin_5090 TonB family protein; PFAM: Gram-negative bacterial tonB protein; SPTR: TonB family protein; TIGRFAM: TonB, C-terminal; hypothetical protein complement(1632399..1632617) Runella slithyformis DSM 19594 10869961 YP_004654999.1 CDS Runsl_1441 NC_015703.1 1632623 1633450 R PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; InterPro IPR003400; KEGG: dfe:Dfer_4057 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR; TonB family protein complement(1632623..1633450) Runella slithyformis DSM 19594 10869962 YP_004655000.1 CDS Runsl_1442 NC_015703.1 1633484 1634053 R PFAM: Biopolymer transport protein ExbD/TolR; InterPro IPR003400; KEGG: sli:Slin_5088 biopolymertransporter ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(1633484..1634053) Runella slithyformis DSM 19594 10869963 YP_004655001.1 CDS Runsl_1443 NC_015703.1 1634084 1634713 R PFAM: Biopolymer transport protein ExbD/TolR; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: sli:Slin_5087 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB proton channel; biopolymer transport protein ExbD/TolR complement(1634084..1634713) Runella slithyformis DSM 19594 10869964 YP_004655002.1 CDS Runsl_1444 NC_015703.1 1634818 1635651 R PFAM: MotA/TolQ/ExbB proton channel family; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: mxa:MXAN_7310 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Oxidoreductase, short chain dehydrogenase/reductase; MotA/TolQ/ExbB proton channel complement(1634818..1635651) Runella slithyformis DSM 19594 10869965 YP_004655003.1 CDS Runsl_1445 NC_015703.1 1636114 1636941 R PFAM: short chain dehydrogenase; KEGG: sli:Slin_4946 hypothetical protein; SPTR: uncharacterized protein; short-chain dehydrogenase/reductase SDR complement(1636114..1636941) Runella slithyformis DSM 19594 10869966 YP_004655004.1 CDS Runsl_1446 NC_015703.1 1637093 1639435 D TIGRFAM: conserved repeat domain; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_4945 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein; hypothetical protein 1637093..1639435 Runella slithyformis DSM 19594 10869967 YP_004655005.1 CDS Runsl_1447 NC_015703.1 1639502 1641958 D PFAM: WD40-like Beta Propeller Repeat; OmpA family; InterPro IPR004993; KEGG: sli:Slin_5924 GH3 auxin-responsive promoter; PFAM: GH3 auxin-responsive promoter; SPTR: GH3 auxin-responsive promoter; OmpA/MotB domain-containing protein 1639502..1641958 Runella slithyformis DSM 19594 10869968 YP_004655006.1 CDS Runsl_1448 NC_015703.1 1642104 1643594 D PFAM: GH3 auxin-responsive promoter; InterPro IPR008258; KEGG: dfe:Dfer_3070 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase-like, catalytic; SPTR: Lytic transglycosylase catalytic; GH3 auxin-responsive promoter 1642104..1643594 Runella slithyformis DSM 19594 10869969 YP_004655007.1 CDS Runsl_1449 NC_015703.1 1643937 1644965 D PFAM: Transglycosylase SLT domain; COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: sli:Slin_1870 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YceI family protein; lytic transglycosylase 1643937..1644965 Runella slithyformis DSM 19594 10869970 YP_004655008.1 CDS Runsl_1450 NC_015703.1 1645040 1645579 R PFAM: YceI-like domain; hypothetical protein complement(1645040..1645579) Runella slithyformis DSM 19594 10869971 YP_004655009.1 CDS Runsl_1451 NC_015703.1 1645597 1645827 D COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_3842 dolichyl-phosphate beta-D-mannosyltransferase; PFAM: Glycosyl transferase, family 2; PRIAM: Dolichyl-phosphate beta-D-mannosyltransferase; SPTR: Dolichyl-phosphate beta-D-mannosyltransferase; hypothetical protein 1645597..1645827 Runella slithyformis DSM 19594 10869972 YP_004655010.1 CDS Runsl_1452 NC_015703.1 1645741 1646529 R PFAM: Glycosyl transferase 2; COGs: COG0407 Uroporphyrinogen-III decarboxylase; HAMAP: Uroporphyrinogen decarboxylase HemE; InterPro IPR006361:IPR000257; KEGG: dfe:Dfer_3425 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); PRIAM: Uroporphyrinogen decarboxylase; SPTR: Uroporphyrinogen decarboxylase; TIGRFAM: Uroporphyrinogen decarboxylase HemE; dolichyl-phosphate beta-D-mannosyltransferase complement(1645741..1646529) Runella slithyformis DSM 19594 10869973 YP_004655011.1 CDS Runsl_1453 NC_015703.1 1646951 1647973 R PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: uroporphyrinogen decarboxylase; COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR001367; KEGG: sli:Slin_2957 iron (metal) dependent repressor, DtxR family; PFAM: Iron dependent repressor; SMART: Iron dependent repressor; SPTR: Iron (Metal) dependent repressor, DtxR family; uroporphyrinogen decarboxylase complement(1646951..1647973) Runella slithyformis DSM 19594 10869974 YP_004655012.1 CDS Runsl_1454 NC_015703.1 1648068 1648721 R PFAM: FeoA domain; Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain; KEGG: sli:Slin_5143 hypothetical protein; SPTR: uncharacterized protein; DtxR family iron (metal) dependent repressor complement(1648068..1648721) Runella slithyformis DSM 19594 10869975 YP_004655013.1 CDS Runsl_1455 NC_015703.1 1648912 1649373 R KEGG: sli:Slin_5142 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1648912..1649373) Runella slithyformis DSM 19594 10869976 YP_004655014.1 CDS Runsl_1456 NC_015703.1 1649387 1649659 R COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_5141 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein complement(1649387..1649659) Runella slithyformis DSM 19594 10869977 YP_004655015.1 CDS Runsl_1457 NC_015703.1 1649742 1650275 R PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1914 Mn2+ and Fe2+ transporter of the NRAMP family; HAMAP: Manganese transport protein mntH; InterPro IPR001046; KEGG: dfe:Dfer_4677 Mn2+/Fe2+ transporter, NRAMP family; PFAM: Natural resistance-associated macrophage protein; SPTR: Mn2+/Fe2+ transporter, NRAMP family; TIGRFAM: Natural resistance-associated macrophage protein; ECF subfamily RNA polymerase sigma-24 subunit complement(1649742..1650275) Runella slithyformis DSM 19594 10869978 YP_004655016.1 CDS Runsl_1458 NC_015703.1 1650461 1651786 D PFAM: Natural resistance-associated macrophage protein; TIGRFAM: NRAMP (natural resistance-associated macrophage protein) metal ion transporters; KEGG: dfe:Dfer_5355 hypothetical protein; SPTR: uncharacterized protein; Manganese transport protein mntH 1650461..1651786 Runella slithyformis DSM 19594 10869979 YP_004655017.1 CDS Runsl_1459 NC_015703.1 1651859 1653010 R PFAM: Domain of Unknown Function (DUF748); KEGG: sli:Slin_5618 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1651859..1653010) Runella slithyformis DSM 19594 10869980 YP_004655018.1 CDS Runsl_1460 NC_015703.1 1653085 1658067 R KEGG: aas:Aasi_0589 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1653085..1658067) Runella slithyformis DSM 19594 10869981 YP_004655019.1 CDS Runsl_1461 NC_015703.1 1658222 1659505 D PFAM: Protein of unknown function (DUF2851); COGs: COG2234 aminopeptidase; InterPro IPR003137:IPR007484; KEGG: dfe:Dfer_4110 peptidase M28; PFAM: Peptidase M28; Protease-associated PA; SPTR: Peptidase M28; hypothetical protein 1658222..1659505 Runella slithyformis DSM 19594 10869982 YP_004655020.1 CDS Runsl_1462 NC_015703.1 1659592 1661061 D PFAM: PA domain; Peptidase M28; KEGG: apj:APJL_1764 hypothetical protein; SPTR: uncharacterized protein; peptidase M28 1659592..1661061 Runella slithyformis DSM 19594 10869983 YP_004655021.1 CDS Runsl_1463 NC_015703.1 1661305 1662615 D SPTR: uncharacterized protein; hypothetical protein 1661305..1662615 Runella slithyformis DSM 19594 10869984 YP_004655022.1 CDS Runsl_1464 NC_015703.1 1662621 1663169 D COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated; hypothetical protein 1662621..1663169 Runella slithyformis DSM 19594 10869985 YP_004655023.1 CDS Runsl_1465 NC_015703.1 1663218 1664229 D PFAM: Rhodopirellula transposase; 'Paired box' domain; COGs: COG2373 Large extracellular alpha-helical protein; InterPro IPR002890:IPR011625; KEGG: dfe:Dfer_3542 alpha-2-macroglobulin domain protein; PFAM: Alpha-2-macroglobulin, N-terminal; Alpha-2-macroglobulin, N-terminal 2; SPTR: Alpha-2-macroglobulin domain protein; transposase join(1663218..1663682,1663684..1664229) Runella slithyformis DSM 19594 10869986 YP_004655024.1 CDS Runsl_1466 NC_015703.1 1664274 1669838 R PFAM: Alpha-macro-globulin thiol-ester bond-forming region; MG2 domain; Alpha-2-macroglobulin family; Alpha-2-macroglobulin MG1 domain; Alpha-2-macroglobulin family N-terminal region; manually curated; alpha-2-macroglobulin complement(1664274..1669838) Runella slithyformis DSM 19594 10869987 YP_004655025.1 CDS Runsl_1468 NC_015703.1 1670364 1671989 R PFAM: ABC transporter; ABC transporter complement(1670364..1671989) Runella slithyformis DSM 19594 10869989 YP_004655026.1 CDS Runsl_1469 NC_015703.1 1672298 1672582 D InterPro IPR004843; KEGG: fjo:Fjoh_0747 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; hypothetical protein 1672298..1672582 Runella slithyformis DSM 19594 10869990 YP_004655027.1 CDS Runsl_1470 NC_015703.1 1672763 1673491 D PFAM: Calcineurin-like phosphoesterase; COGs: COG1381 Recombinational DNA repair protein (RecF pathway); HAMAP: DNA repair protein recO; InterPro IPR003717; KEGG: dfe:Dfer_4044 DNA repair protein RecO; PFAM: Recombination protein O, RecO; SPTR: DNA repair protein recO; TIGRFAM: Recombination protein O, RecO; metallophosphoesterase 1672763..1673491 Runella slithyformis DSM 19594 10869991 YP_004655028.1 CDS Runsl_1471 NC_015703.1 1673557 1674252 R PFAM: Recombination protein O C terminal; Recombination protein O N terminal; TIGRFAM: DNA repair protein RecO; COGs: COG0548 Acetylglutamate kinase; InterPro IPR004662:IPR001048; KEGG: dfe:Dfer_4174 acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase; PRIAM: Acetylglutamate kinase; SPTR: Acetylglutamate kinase; TIGRFAM: Acetylglutamate kinase; DNA repair protein recO complement(1673557..1674252) Runella slithyformis DSM 19594 10869992 YP_004655029.1 CDS Runsl_1472 NC_015703.1 1674298 1675107 D PFAM: Amino acid kinase; TIGRFAM: acetylglutamate kinase; COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006175; KEGG: lby:Lbys_3494 endoribonuclease L-psp; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP; acetylglutamate kinase 1674298..1675107 Runella slithyformis DSM 19594 10869993 YP_004655030.1 CDS Runsl_1473 NC_015703.1 1675165 1675626 D PFAM: Endoribonuclease L-PSP; KEGG: sli:Slin_6621 hypothetical protein; SPTR: uncharacterized protein; endoribonuclease L-PSP 1675165..1675626 Runella slithyformis DSM 19594 10869994 YP_004655031.1 CDS Runsl_1474 NC_015703.1 1675739 1683340 R COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); InterPro IPR002695:IPR011607:IPR013982; KEGG: dfe:Dfer_3074 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, formylation region; MGS-like; PRIAM: Phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme, formylation region; SPTR: IMP cyclohydrolase; TIGRFAM: AICARFT/IMPCHase bienzyme; hypothetical protein complement(1675739..1683340) Runella slithyformis DSM 19594 10869995 YP_004655032.1 CDS Runsl_1475 NC_015703.1 1683568 1685136 R PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; InterPro IPR011701; KEGG: gfo:GFO_2207 hypothetical protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily transporter; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(1683568..1685136) Runella slithyformis DSM 19594 10869996 YP_004655033.1 CDS Runsl_1476 NC_015703.1 1685297 1686451 R PFAM: Major Facilitator Superfamily; KEGG: psn:Pedsa_2060 hypothetical protein; SPTR: uncharacterized protein; major facilitator superfamily protein complement(1685297..1686451) Runella slithyformis DSM 19594 10869997 YP_004655034.1 CDS Runsl_1477 NC_015703.1 1686574 1687395 D PFAM: Prolyl oligopeptidase; KEGG: fjo:Fjoh_2886 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1686574..1687395 Runella slithyformis DSM 19594 10869998 YP_004655035.1 CDS Runsl_1478 NC_015703.1 1687412 1688251 D KEGG: fjo:Fjoh_2065 hypothetical protein; SPTR: Transposase; hypothetical protein 1687412..1688251 Runella slithyformis DSM 19594 10869999 YP_004655036.1 CDS Runsl_1479 NC_015703.1 1688556 1689098 D PFAM: Transposase IS200 like; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR005931:IPR015590; KEGG: dfe:Dfer_3807 delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase; PRIAM: 1-pyrroline-5-carboxylate dehydrogenase; SPTR: 1-pyrroline-5-carboxylate dehydrogenase; TIGRFAM: Delta-1-pyrroline-5-carboxylate dehydrogenase 1; hypothetical protein 1688556..1689098 Runella slithyformis DSM 19594 10870000 YP_004655037.1 CDS Runsl_1480 NC_015703.1 1689314 1690945 R PFAM: Aldehyde dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase, group 1; COGs: COG1505 Serine protease of the peptidase S9A; InterPro IPR004106:IPR001375; KEGG: dfe:Dfer_4608 prolyl oligopeptidase; PFAM: Peptidase S9A, oligopeptidase, N-terminal beta-propeller; Peptidase S9, prolyl oligopeptidase, catalytic domain; PRIAM: Prolyl oligopeptidase; SPTR: Prolyl oligopeptidase; delta-1-pyrroline-5-carboxylate dehydrogenase complement(1689314..1690945) Runella slithyformis DSM 19594 10870001 YP_004655038.1 CDS Runsl_1481 NC_015703.1 1691019 1693121 R PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase; KEGG: dfe:Dfer_3562 hypothetical protein; SPTR: uncharacterized protein; prolyl oligopeptidase complement(1691019..1693121) Runella slithyformis DSM 19594 10870002 YP_004655039.1 CDS Runsl_1482 NC_015703.1 1693355 1693810 R KEGG: reh:H16_A1246 hypothetical protein; SPTR: uncharacterized protein h16_A1246; hypothetical protein complement(1693355..1693810) Runella slithyformis DSM 19594 10870003 YP_004655040.1 CDS Runsl_1483 NC_015703.1 1694027 1694482 R COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076; KEGG: sli:Slin_0454 glucose-methanol-choline oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; hypothetical protein complement(1694027..1694482) Runella slithyformis DSM 19594 10870004 YP_004655041.1 CDS Runsl_1484 NC_015703.1 1694517 1696229 R PFAM: GMC oxidoreductase; COGs: COG4783 Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: sli:Slin_0980 peptidase M48 Ste24p; PFAM: Peptidase M48, Ste24p; SPTR: Peptidase M48 Ste24p; FAD dependent oxidoreductase complement(1694517..1696229) Runella slithyformis DSM 19594 10870005 YP_004655042.1 CDS Runsl_1485 NC_015703.1 1696425 1697285 D PFAM: Peptidase M48; COGs: COG0824 thioesterase; KEGG: geo:Geob_1205 thioesterase superfamily protein; SPTR: Thioesterase superfamily; peptidase M48 Ste24p 1696425..1697285 Runella slithyformis DSM 19594 10870006 YP_004655043.1 CDS Runsl_1486 NC_015703.1 1697362 1697793 R PFAM: Acyl-ACP thioesterase; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family; COGs: COG1714 membrane protein/domain; InterPro IPR010432; KEGG: sli:Slin_4958 RDD domain containing protein; PFAM: RDD; SPTR: RDD domain containing protein; thioesterase complement(1697362..1697793) Runella slithyformis DSM 19594 10870007 YP_004655044.1 CDS Runsl_1487 NC_015703.1 1697805 1698515 R PFAM: RDD family; COGs: COG1300 membrane protein; InterPro IPR002798; KEGG: sli:Slin_4959 hypothetical protein; PFAM: Protein of unknown function DUF95, transmembrane; SPTR: uncharacterized protein; RDD domain-containing protein complement(1697805..1698515) Runella slithyformis DSM 19594 10870008 YP_004655045.1 CDS Runsl_1488 NC_015703.1 1698626 1699573 D PFAM: Integral membrane protein DUF95; KEGG: sli:Slin_4960 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1698626..1699573 Runella slithyformis DSM 19594 10870009 YP_004655046.1 CDS Runsl_1489 NC_015703.1 1699609 1700496 D COGs: COG3275 regulator of cell autolysis; InterPro IPR001646:IPR010559:IPR003594; KEGG: sli:Slin_3593 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; Pentapeptide repeat; ATP-binding region, ATPase-like; SPTR: Signal transduction histidine kinase, LytS; hypothetical protein 1699609..1700496 Runella slithyformis DSM 19594 10870010 YP_004655049.1 CDS Runsl_1492 NC_015703.1 1703009 1704295 R PFAM: Serine hydroxymethyltransferase; COGs: COG0164 Ribonuclease HII; InterPro IPR001352; KEGG: sli:Slin_6108 ribonuclease H; PFAM: Ribonuclease HII/HIII; PRIAM: Ribonuclease H; SPTR: Ribonuclease HII; glycine hydroxymethyltransferase complement(1703009..1704295) Runella slithyformis DSM 19594 10870013 YP_004655050.1 CDS Runsl_1493 NC_015703.1 1704401 1704976 R PFAM: Ribonuclease HII; COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715; KEGG: phe:Phep_3890 polysaccharide export system outer membrane protein; PFAM: Polysaccharide export protein; SPTR: Polysaccharide export system outer membrane protein; ribonuclease H complement(1704401..1704976) Runella slithyformis DSM 19594 10870014 YP_004655051.1 CDS Runsl_1494 NC_015703.1 1705139 1705927 D PFAM: Polysaccharide biosynthesis/export protein; COGs: COG4464 Capsular polysaccharide biosynthesis protein; KEGG: psn:Pedsa_3849 PHP domain protein; SPTR: PHP domain protein; polysaccharide export protein 1705139..1705927 Runella slithyformis DSM 19594 10870015 YP_004655052.1 CDS Runsl_1495 NC_015703.1 1705933 1706679 D COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR005702:IPR003856; KEGG: phe:Phep_3891 capsular exopolysaccharide family; PFAM: Lipopolysaccharide biosynthesis; PRIAM: Non-specific protein-tyrosine kinase; SPTR: Capsular exopolysaccharide family; TIGRFAM: Exopolysaccharide synthesis protein; PHP domain-containing protein 1705933..1706679 Runella slithyformis DSM 19594 10870016 YP_004655053.1 CDS Runsl_1496 NC_015703.1 1706700 1709150 D PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family; capsular exopolysaccharide family protein 1706700..1709150 Runella slithyformis DSM 19594 10870017 YP_004655054.1 CDS Runsl_1497 NC_015703.1 1709306 1709473 R InterPro IPR013105:IPR001440:IPR019734; KEGG: sli:Slin_5634 hypothetical protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(1709306..1709473) Runella slithyformis DSM 19594 10870018 YP_004655055.1 CDS Runsl_1498 NC_015703.1 1709611 1710306 D PFAM: Tetratricopeptide repeat; COGs: COG0524 Sugar kinase ribokinase; InterPro IPR011611; KEGG: dfe:Dfer_3908 PfkB domain protein; PFAM: Carbohydrate/purine kinase; SPTR: PfkB domain protein; hypothetical protein 1709611..1710306 Runella slithyformis DSM 19594 10870019 YP_004655056.1 CDS Runsl_1499 NC_015703.1 1710408 1711322 D PFAM: pfkB family carbohydrate kinase; KEGG: amr:AM1_0502 hypothetical protein; SPTR: Membrane protein; PfkB domain-containing protein 1710408..1711322 Runella slithyformis DSM 19594 10870020 YP_004655057.1 CDS Runsl_1500 NC_015703.1 1711409 1712254 D PFAM: CAAX amino terminal protease; COGs: COG0113 Delta-aminolevulinic acid dehydratase; InterPro IPR001731; KEGG: dfe:Dfer_3652 delta-aminolevulinic acid dehydratase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase; PRIAM: Porphobilinogen synthase; SPTR: Delta-aminolevulinic acid dehydratase; hypothetical protein 1711409..1712254 Runella slithyformis DSM 19594 10870021 YP_004655058.1 CDS Runsl_1501 NC_015703.1 1712285 1713265 D PFAM: Delta-aminolevulinic acid dehydratase; InterPro IPR000782; KEGG: sli:Slin_4432 beta-Ig-H3/fasciclin; PFAM: FAS1 domain; SMART: FAS1 domain; SPTR: Beta-Ig-H3/fasciclin; porphobilinogen synthase 1712285..1713265 Runella slithyformis DSM 19594 10870022 YP_004655059.1 CDS Runsl_1502 NC_015703.1 1713431 1714327 D PFAM: Fasciclin domain; KEGG: sli:Slin_0698 hypothetical protein; SPTR: uncharacterized protein; beta-Ig-H3/fasciclin 1713431..1714327 Runella slithyformis DSM 19594 10870023 YP_004655060.1 CDS Runsl_1503 NC_015703.1 1714389 1714889 D COGs: COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC; InterPro IPR011815:IPR001264:IPR001460:IPR009647; KEGG: dfe:Dfer_3903 penicillin-binding protein 1C; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; Penicillin-binding, C-terminal; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Penicillin-binding protein 1C; TIGRFAM: Penicillin-binding protein 1C; hypothetical protein 1714389..1714889 Runella slithyformis DSM 19594 10870024 YP_004655061.1 CDS Runsl_1504 NC_015703.1 1714895 1717216 R PFAM: Penicillin-Binding Protein C-terminus Family; Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein 1C; KEGG: dfe:Dfer_3254 hypothetical protein; SPTR: uncharacterized protein; penicillin-binding protein 1C complement(1714895..1717216) Runella slithyformis DSM 19594 10870025 YP_004655062.1 CDS Runsl_1505 NC_015703.1 1717260 1717562 R COGs: COG2865 transcriptional regulator protein; InterPro IPR007421; KEGG: sli:Slin_5703 transcriptional regulator; PFAM: ATPase associated with various cellular activities, AAA-4; SPTR: transcriptional regulator; hypothetical protein complement(1717260..1717562) Runella slithyformis DSM 19594 10870026 YP_004655063.1 CDS Runsl_1506 NC_015703.1 1717607 1718434 D PFAM: Divergent AAA domain; transcriptional regulator 1717607..1718434 Runella slithyformis DSM 19594 10870027 YP_004655064.1 CDS Runsl_1507 NC_015703.1 1718484 1718639 R COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: cpi:Cpin_3674 amino acid permease-associated region; PFAM: Amino acid permease-associated region; SPTR: Amino acid permease-associated region; hypothetical protein complement(1718484..1718639) Runella slithyformis DSM 19594 10870028 YP_004655065.1 CDS Runsl_1508 NC_015703.1 1718641 1720293 R PFAM: Amino acid permease; COGs: COG3222 conserved hypothetical protein; InterPro IPR018641; KEGG: gfo:GFO_3609 hypothetical protein; PFAM: Protein of unknown function DUF2064; SPTR: uncharacterized protein; amino acid permease complement(1718641..1720293) Runella slithyformis DSM 19594 10870029 YP_004655066.1 CDS Runsl_1509 NC_015703.1 1720377 1721015 R PFAM: Uncharacterized protein conserved in bacteria (DUF2064); KEGG: mtt:Ftrac_0149 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1720377..1721015) Runella slithyformis DSM 19594 10870030 YP_004655067.1 CDS Runsl_1510 NC_015703.1 1721094 1723046 D InterPro IPR007730; KEGG: sli:Slin_5154 sporulation domain protein; PFAM: Sporulation/cell division region, bacteria; SPTR: Sporulation domain protein; hypothetical protein 1721094..1723046 Runella slithyformis DSM 19594 10870031 YP_004655068.1 CDS Runsl_1511 NC_015703.1 1723144 1723680 D PFAM: Sporulation related domain; COGs: COG1089 GDP-D-mannose dehydratase; InterPro IPR006368:IPR001509; KEGG: dfe:Dfer_3954 GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: GDP-mannose 4,6-dehydratase; SPTR: GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; sporulation domain-containing protein 1723144..1723680 Runella slithyformis DSM 19594 10870032 YP_004655069.1 CDS Runsl_1512 NC_015703.1 1723715 1724830 D PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; COGs: COG0566 rRNA methylase; InterPro IPR004441:IPR013123:IPR001537; KEGG: dfe:Dfer_2661 RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SPTR: RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase TrmH, group 3; GDP-mannose 4,6-dehydratase 1723715..1724830 Runella slithyformis DSM 19594 10870033 YP_004655070.1 CDS Runsl_1513 NC_015703.1 1724907 1725701 R PFAM: SpoU rRNA Methylase; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, , group 3; InterPro IPR013216; KEGG: ttr:Tter_2164 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; TrmH family RNA methyltransferase complement(1724907..1725701) Runella slithyformis DSM 19594 10870034 YP_004655071.1 CDS Runsl_1514 NC_015703.1 1725703 1726743 R PFAM: O-methyltransferase; COGs: COG0211 Ribosomal protein L27; HAMAP: Ribosomal protein L27; InterPro IPR001684; KEGG: lby:Lbys_0882 lsu ribosomal protein l27p; PFAM: Ribosomal protein L27; SPTR: 50S ribosomal protein L27; TIGRFAM: Ribosomal protein L27; type 11 methyltransferase complement(1725703..1726743) Runella slithyformis DSM 19594 10870035 YP_004655072.1 CDS Runsl_1515 NC_015703.1 1726845 1727114 R PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; COGs: COG0261 Ribosomal protein L21; HAMAP: Ribosomal protein L21; InterPro IPR001787; KEGG: dfe:Dfer_4884 ribosomal protein L21; PFAM: Ribosomal protein L21; SPTR: 50S ribosomal protein L21; TIGRFAM: Ribosomal protein L21; 50S ribosomal protein L27 complement(1726845..1727114) Runella slithyformis DSM 19594 10870036 YP_004655073.1 CDS Runsl_1516 NC_015703.1 1727158 1727469 R PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21; COGs: COG0266 Formamidopyrimidine-DNA glycosylase; InterPro IPR012319:IPR015886; KEGG: sli:Slin_5592 DNA-formamidopyrimidine glycosylase; PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; PRIAM: DNA-formamidopyrimidine glycosylase; SPTR: Formamidopyrimidine-DNA glycosylase; 50S ribosomal protein L21 complement(1727158..1727469) Runella slithyformis DSM 19594 10870037 YP_004655074.1 CDS Runsl_1517 NC_015703.1 1727586 1728401 R PFAM: Formamidopyrimidine-DNA glycosylase H2TH domain; Formamidopyrimidine-DNA glycosylase N-terminal domain; TIGRFAM: formamidopyrimidine-DNA glycosylase (fpg); COGs: COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; HAMAP: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; InterPro IPR003837; KEGG: sli:Slin_5449 glutamyl-tRNA(Gln) amidotransferase subunit C; PFAM: Glu-tRNAGln amidotransferase, C subunit; SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; DNA-formamidopyrimidine glycosylase complement(1727586..1728401) Runella slithyformis DSM 19594 10870038 YP_004655075.1 CDS Runsl_1518 NC_015703.1 1728499 1728786 R PFAM: Glu-tRNAGln amidotransferase C subunit; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit; KEGG: sli:Slin_5879 hypothetical protein; SPTR: uncharacterized protein; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(1728499..1728786) Runella slithyformis DSM 19594 10870039 YP_004655076.1 CDS Runsl_1519 NC_015703.1 1729017 1730483 D KEGG: dfe:Dfer_4548 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1729017..1730483 Runella slithyformis DSM 19594 10870040 YP_004655077.1 CDS Runsl_1520 NC_015703.1 1730521 1732362 D COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_5177 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; hypothetical protein 1730521..1732362 Runella slithyformis DSM 19594 10870041 YP_004655078.1 CDS Runsl_1521 NC_015703.1 1732371 1733114 R PFAM: Glycosyl transferase 2; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_3837 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; family 2 glycosyl transferase complement(1732371..1733114) Runella slithyformis DSM 19594 10870042 YP_004655079.1 CDS Runsl_1522 NC_015703.1 1733198 1734013 R PFAM: Glycosyl transferase 2; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_5180 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; family 2 glycosyl transferase complement(1733198..1734013) Runella slithyformis DSM 19594 10870043 YP_004655080.1 CDS Runsl_1523 NC_015703.1 1734010 1734981 R PFAM: Glycosyl transferase 2; InterPro IPR008775; KEGG: dfe:Dfer_3838 phytanoyl-CoA dioxygenase; PFAM: Phytanoyl-CoA dioxygenase; SPTR: Phytanoyl-CoA dioxygenase; family 2 glycosyl transferase complement(1734010..1734981) Runella slithyformis DSM 19594 10870044 YP_004655081.1 CDS Runsl_1524 NC_015703.1 1734978 1735880 R PFAM: Phytanoyl-CoA dioxygenase (PhyH); KEGG: dfe:Dfer_3839 hypothetical protein; SPTR: uncharacterized protein; phytanoyl-CoA dioxygenase complement(1734978..1735880) Runella slithyformis DSM 19594 10870045 YP_004655082.1 CDS Runsl_1525 NC_015703.1 1735924 1736859 R COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dfe:Dfer_3840 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; hypothetical protein complement(1735924..1736859) Runella slithyformis DSM 19594 10870046 YP_004655083.1 CDS Runsl_1526 NC_015703.1 1736947 1737828 R PFAM: ubiE/COQ5 methyltransferase; KEGG: dfe:Dfer_3528 hypothetical protein; SPTR: uncharacterized protein; type 11 methyltransferase complement(1736947..1737828) Runella slithyformis DSM 19594 10870047 YP_004655084.1 CDS Runsl_1527 NC_015703.1 1737909 1739513 R InterPro IPR001173; KEGG: dfe:Dfer_3529 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; hypothetical protein complement(1737909..1739513) Runella slithyformis DSM 19594 10870048 YP_004655085.1 CDS Runsl_1528 NC_015703.1 1739551 1740492 R PFAM: Glycosyl transferase 2; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_3530 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; family 2 glycosyl transferase complement(1739551..1740492) Runella slithyformis DSM 19594 10870049 YP_004655086.1 CDS Runsl_1529 NC_015703.1 1740603 1741676 R PFAM: NAD dependent epimerase/dehydratase; COGs: COG5002 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: sli:Slin_5610 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase; NAD-dependent epimerase/dehydratase complement(1740603..1741676) Runella slithyformis DSM 19594 10870050 YP_004655087.1 CDS Runsl_1530 NC_015703.1 1741837 1742871 R PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; HAMAP: Ribosomal protein L33; InterPro IPR001705; KEGG: dfe:Dfer_3609 ribosomal protein L33; PFAM: Ribosomal protein L33; SPTR: 50S ribosomal protein L33; TIGRFAM: Ribosomal protein L33; integral membrane sensor signal transduction histidine kinase complement(1741837..1742871) Runella slithyformis DSM 19594 10870051 YP_004655088.1 CDS Runsl_1531 NC_015703.1 1742996 1743178 D PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; KEGG: dfe:Dfer_3608 hypothetical protein; SPTR: uncharacterized protein; 50S ribosomal protein L33 1742996..1743178 Runella slithyformis DSM 19594 10870052 YP_004655089.1 CDS Runsl_1532 NC_015703.1 1743263 1743415 D COGs: COG0552 Signal recognition particle GTPase; InterPro IPR004390:IPR013822:IPR000897:IPR003593; KEGG: dfe:Dfer_3607 signal recognition particle-docking protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; SMART: ATPase, AAA+ type, core; SPTR: Signal recognition particle-docking protein FtsY; TIGRFAM: Cell division transporter substrate-binding protein FtsY; hypothetical protein 1743263..1743415 Runella slithyformis DSM 19594 10870053 YP_004655090.1 CDS Runsl_1533 NC_015703.1 1743530 1744558 D PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY; signal recognition particle-docking protein FtsY 1743530..1744558 Runella slithyformis DSM 19594 10870054 YP_004655091.1 CDS Runsl_1534 NC_015703.1 1744624 1745799 R InterPro IPR010869:IPR006311; KEGG: sli:Slin_5933 hypothetical protein; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein; hypothetical protein complement(1744624..1745799) Runella slithyformis DSM 19594 10870055 YP_004655092.1 CDS Runsl_1535 NC_015703.1 1745936 1747420 R PFAM: Protein of unknown function (DUF1501); COGs: COG2852 conserved hypothetical protein; InterPro IPR007569; KEGG: tra:Trad_2714 hypothetical protein; PFAM: Protein of unknown function DUF559; SPTR: uncharacterized protein; hypothetical protein complement(1745936..1747420) Runella slithyformis DSM 19594 10870056 YP_004655093.1 CDS Runsl_1536 NC_015703.1 1747441 1747854 R PFAM: Protein of unknown function (DUF559); InterPro IPR011429:IPR011444; KEGG: dfe:Dfer_1334 protein of unknown function DUF1549; PFAM: Protein of unknown function DUF1549; Cytochrome C, Planctomycete; SPTR: uncharacterized protein; hypothetical protein complement(1747441..1747854) Runella slithyformis DSM 19594 10870057 YP_004655094.1 CDS Runsl_1537 NC_015703.1 1747955 1751245 R PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553); KEGG: sli:Slin_1721 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1747955..1751245) Runella slithyformis DSM 19594 10870058 YP_004655095.1 CDS Runsl_1538 NC_015703.1 1751492 1752718 R KEGG: sli:Slin_1722 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1751492..1752718) Runella slithyformis DSM 19594 10870059 YP_004655096.1 CDS Runsl_1539 NC_015703.1 1752705 1754096 R PFAM: Protein of unknown function (DUF3500); COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: cpi:Cpin_2661 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; hypothetical protein complement(1752705..1754096) Runella slithyformis DSM 19594 10870060 YP_004655097.1 CDS Runsl_1540 NC_015703.1 1754216 1754974 R PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: bfs:BF3660 hypothetical protein; PFAM: Signal transduction histidine kinase, internal region; SPTR: membrane protein; LytTR family two component transcriptional regulator complement(1754216..1754974) Runella slithyformis DSM 19594 10870061 YP_004655098.1 CDS Runsl_1541 NC_015703.1 1755013 1755972 R PFAM: Histidine kinase; signal transduction histidine kinase complement(1755013..1755972) Runella slithyformis DSM 19594 10870062 YP_004655099.1 CDS Runsl_1542 NC_015703.1 1756091 1756453 R COGs: COG2828 conserved hypothetical protein; InterPro IPR007400; KEGG: sli:Slin_4025 hypothetical protein; PFAM: PrpF protein; SPTR: uncharacterized protein; manually curated; hypothetical protein complement(1756091..1756453) Runella slithyformis DSM 19594 10870063 YP_004655100.1 CDS Runsl_1543 NC_015703.1 1756573 1757685 R PFAM: PrpF protein; COGs: COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase; InterPro IPR006115:IPR015814; KEGG: sli:Slin_4024 6-phosphogluconate dehydrogenase NAD-binding protein; PFAM: Phosphogluconate dehydrogenase, NAD-binding, , C-terminal; 6-phosphogluconate dehydrogenase, NAD-binding; SPTR: 6-phosphogluconate dehydrogenase NAD-binding protein; PrpF protein complement(1756573..1757685) Runella slithyformis DSM 19594 10870064 YP_004655101.1 CDS Runsl_1544 NC_015703.1 1757686 1758465 R PFAM: Domain of unknown function (DUF1932); NAD binding domain of 6-phosphogluconate dehydrogenase; COGs: COG0684 Demethylmenaquinone methyltransferase; InterPro IPR005493; KEGG: sli:Slin_4023 dimethylmenaquinone methyltransferase; PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; SPTR: Dimethylmenaquinone methyltransferase; phosphogluconate dehydrogenase, NAD-binding protein complement(1757686..1758465) Runella slithyformis DSM 19594 10870065 YP_004655102.1 CDS Runsl_1545 NC_015703.1 1758478 1759098 R PFAM: Demethylmenaquinone methyltransferase; COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: sli:Slin_4022 LmbE family protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR: LmbE family protein; dimethylmenaquinone methyltransferase complement(1758478..1759098) Runella slithyformis DSM 19594 10870066 YP_004655103.1 CDS Runsl_1546 NC_015703.1 1759103 1759816 R PFAM: GlcNAc-PI de-N-acetylase; InterPro IPR012657; KEGG: fjo:Fjoh_0085 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02436; LmbE family protein complement(1759103..1759816) Runella slithyformis DSM 19594 10870067 YP_004655104.1 CDS Runsl_1547 NC_015703.1 1759830 1760285 R PFAM: S23 ribosomal protein; TIGRFAM: TIGR02436 family protein; InterPro IPR004360; KEGG: sli:Slin_4021 catechol 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; PRIAM: Biphenyl-2,3-diol 1,2-dioxygenase; SPTR: Catechol 2,3-dioxygenase; hypothetical protein complement(1759830..1760285) Runella slithyformis DSM 19594 10870068 YP_004655105.1 CDS Runsl_1548 NC_015703.1 1760351 1761307 R PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: catechol 2,3 dioxygenase; KEGG: nla:NLA_20040 hypothetical protein; SPTR: Alpha/beta superfamily hydrolase; biphenyl 2,3-dioxygenase complement(1760351..1761307) Runella slithyformis DSM 19594 10870069 YP_004655106.1 CDS Runsl_1549 NC_015703.1 1761400 1762848 R PFAM: alpha/beta hydrolase fold; KEGG: sli:Slin_3122 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1761400..1762848) Runella slithyformis DSM 19594 10870070 YP_004655107.1 CDS Runsl_1550 NC_015703.1 1762944 1764113 R COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: sli:Slin_4019 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; hypothetical protein complement(1762944..1764113) Runella slithyformis DSM 19594 10870071 YP_004655108.1 CDS Runsl_1551 NC_015703.1 1764229 1765107 D PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism; InterPro IPR013987:IPR013988:IPR004624; KEGG: lby:Lbys_2347 alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein, C-terminal; PhnA protein, N-terminal; SPTR: Alkylphosphonate utilization operon protein PhnA; TIGRFAM: PhnA protein; AraC family transcriptional regulator 1764229..1765107 Runella slithyformis DSM 19594 10870072 YP_004655109.1 CDS Runsl_1552 NC_015703.1 1765174 1765527 D PFAM: PhnA protein; PhnA Zinc-Ribbon; TIGRFAM: alkylphosphonate utilization operon protein PhnA; COGs: COG4099 peptidase; InterPro IPR003140; KEGG: rbi:RB2501_02810 glucan-binding protein D; BglB-like protein; PFAM: Phospholipase/carboxylesterase; SPTR: glucan-binding protein D; BglB-like protein; alkylphosphonate utilization protein PhnA 1765174..1765527 Runella slithyformis DSM 19594 10870073 YP_004655110.1 CDS Runsl_1553 NC_015703.1 1765712 1767034 D PFAM: Phospholipase/Carboxylesterase; COGs: COG0288 Carbonic anhydrase; InterPro IPR001765; KEGG: cao:Celal_1252 carbonate dehydratase; PFAM: Carbonic anhydrase; PRIAM: Carbonate dehydratase; SPTR: Carbonic anhydrase; phospholipase/carboxylesterase 1765712..1767034 Runella slithyformis DSM 19594 10870074 YP_004655111.1 CDS Runsl_1554 NC_015703.1 1767153 1767782 R PFAM: Carbonic anhydrase; KEGG: dfe:Dfer_3073 hypothetical protein; SPTR: uncharacterized protein; carbonate dehydratase complement(1767153..1767782) Runella slithyformis DSM 19594 10870075 YP_004655112.1 CDS Runsl_1555 NC_015703.1 1767811 1768608 R COGs: COG0349 Ribonuclease D; InterPro IPR002562; KEGG: sfu:Sfum_0414 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease; SPTR: 3'-5' exonuclease; manually curated; hypothetical protein complement(1767811..1768608) Runella slithyformis DSM 19594 10870076 YP_004655113.1 CDS Runsl_1556 NC_015703.1 1768781 1769932 R PFAM: 3'-5' exonuclease; TIGRFAM: ribonuclease D; COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR004176:IPR003959:IPR013093:IPR019489:IPR 003593:IPR017730; KEGG: dfe:Dfer_2969 ATP-dependent chaperone ClpB; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent chaperone ClpB; TIGRFAM: Chaperonin ClpB; 3'-5' exonuclease complement(1768781..1769932) Runella slithyformis DSM 19594 10870077 YP_004655114.1 CDS Runsl_1557 NC_015703.1 1770091 1772718 D PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB; InterPro IPR008538; KEGG: sli:Slin_4968 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; ATP-dependent chaperone ClpB 1770091..1772718 Runella slithyformis DSM 19594 10870078 YP_004655115.1 CDS Runsl_1558 NC_015703.1 1772787 1773434 R PFAM: Protein of unknown function (DUF820); KEGG: tva:TVAG_073360 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1772787..1773434) Runella slithyformis DSM 19594 10870079 YP_004655116.1 CDS Runsl_1559 NC_015703.1 1773537 1774061 R PFAM: PBCV-specific basic adaptor domain; KEGG: sli:Slin_6276 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1773537..1774061) Runella slithyformis DSM 19594 10870080 YP_004655117.1 CDS Runsl_1560 NC_015703.1 1774211 1775392 D PFAM: FG-GAP repeat; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sli:Slin_2585 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; hypothetical protein 1774211..1775392 Runella slithyformis DSM 19594 10870081 YP_004655118.1 CDS Runsl_1561 NC_015703.1 1775428 1776567 R PFAM: Glycosyl transferases group 1; KEGG: dfe:Dfer_0255 hypothetical protein; SPTR: uncharacterized protein; group 1 glycosyl transferase complement(1775428..1776567) Runella slithyformis DSM 19594 10870082 YP_004655119.1 CDS Runsl_1562 NC_015703.1 1776545 1777549 R KEGG: dfe:Dfer_2782 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1776545..1777549) Runella slithyformis DSM 19594 10870083 YP_004655120.1 CDS Runsl_1563 NC_015703.1 1777546 1778853 R COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_3959 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; hypothetical protein complement(1777546..1778853) Runella slithyformis DSM 19594 10870084 YP_004655121.1 CDS Runsl_1564 NC_015703.1 1778865 1779581 R PFAM: Glycosyl transferase 2; InterPro IPR001296; KEGG: lby:Lbys_1846 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; family 2 glycosyl transferase complement(1778865..1779581) Runella slithyformis DSM 19594 10870085 YP_004655122.1 CDS Runsl_1565 NC_015703.1 1779963 1781168 R PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sli:Slin_2582 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; group 1 glycosyl transferase complement(1779963..1781168) Runella slithyformis DSM 19594 10870086 YP_004655123.1 CDS Runsl_1566 NC_015703.1 1781165 1782280 R PFAM: Glycosyl transferases group 1; KEGG: lby:Lbys_3142 glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1; group 1 glycosyl transferase complement(1781165..1782280) Runella slithyformis DSM 19594 10870087 YP_004655124.1 CDS Runsl_1567 NC_015703.1 1782362 1783306 R KEGG: dfe:Dfer_2778 glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1; glycosyl transferase family protein complement(1782362..1783306) Runella slithyformis DSM 19594 10870088 YP_004655125.1 CDS Runsl_1568 NC_015703.1 1783288 1784259 R KEGG: dfe:Dfer_4231 hypothetical protein; SPTR: uncharacterized protein; glycosyl transferase family protein complement(1783288..1784259) Runella slithyformis DSM 19594 10870089 YP_004655126.1 CDS Runsl_1569 NC_015703.1 1784256 1786343 R COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dfe:Dfer_2777 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; hypothetical protein complement(1784256..1786343) Runella slithyformis DSM 19594 10870090 YP_004655127.1 CDS Runsl_1570 NC_015703.1 1786307 1787518 R PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dfe:Dfer_3551 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; group 1 glycosyl transferase complement(1786307..1787518) Runella slithyformis DSM 19594 10870091 YP_004655128.1 CDS Runsl_1571 NC_015703.1 1787518 1788621 R PFAM: Glycosyl transferases group 1; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: dfe:Dfer_3552 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; group 1 glycosyl transferase complement(1787518..1788621) Runella slithyformis DSM 19594 10870092 YP_004655129.1 CDS Runsl_1572 NC_015703.1 1788625 1789617 R PFAM: Glycosyl transferase 2; COGs: COG1043 Acyl-(acyl carrier protein); InterPro IPR001451; KEGG: dfe:Dfer_2776 acyl-(acyl carrier protein)-like protein; SPTR: Acyl-(Acyl carrier protein)-like protein; family 2 glycosyl transferase complement(1788625..1789617) Runella slithyformis DSM 19594 10870093 YP_004655130.1 CDS Runsl_1573 NC_015703.1 1789706 1790359 R PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; InterPro IPR014985; KEGG: sli:Slin_2574 WbqC-like family protein; PFAM: WbqC-like protein family; SPTR: WbqC-like family protein; acyl carrier protein complement(1789706..1790359) Runella slithyformis DSM 19594 10870094 YP_004655131.1 CDS Runsl_1574 NC_015703.1 1790448 1791146 R PFAM: WbqC-like protein family; KEGG: sli:Slin_2573 hypothetical protein; SPTR: uncharacterized protein; WbqC-like family protein complement(1790448..1791146) Runella slithyformis DSM 19594 10870095 YP_004655132.1 CDS Runsl_1575 NC_015703.1 1791238 1793319 R COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: dfe:Dfer_2773 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase; hypothetical protein complement(1791238..1793319) Runella slithyformis DSM 19594 10870096 YP_004655133.1 CDS Runsl_1576 NC_015703.1 1793322 1794395 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_2772 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Teichoic-acid-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; DegT/DnrJ/EryC1/StrS aminotransferase complement(1793322..1794395) Runella slithyformis DSM 19594 10870097 YP_004655134.1 CDS Runsl_1577 NC_015703.1 1794417 1795667 R PFAM: ABC transporter; COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525; KEGG: sli:Slin_2570 ABC transporter; PFAM: ABC-2 type transporter; SPTR: ABC-2 type transporter; teichoic-acid-transporting AtPase complement(1794417..1795667) Runella slithyformis DSM 19594 10870098 YP_004655135.1 CDS Runsl_1578 NC_015703.1 1795703 1796545 R PFAM: ABC-2 type transporter; KEGG: dfe:Dfer_2770 hypothetical protein; SPTR: uncharacterized protein; ABC transporter complement(1795703..1796545) Runella slithyformis DSM 19594 10870099 YP_004655136.1 CDS Runsl_1579 NC_015703.1 1796594 1797670 R COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715:IPR019554; KEGG: sli:Slin_2568 ligand-binding protein; PFAM: Polysaccharide export protein; Soluble ligand binding domain; SPTR: Soluble ligand binding domain protein; hypothetical protein complement(1796594..1797670) Runella slithyformis DSM 19594 10870100 YP_004655137.1 CDS Runsl_1580 NC_015703.1 1797716 1800217 R PFAM: Polysaccharide biosynthesis/export protein; SLBB domain; COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterPro IPR003594:IPR013506:IPR001241; KEGG: sli:Slin_2567 DNA topoisomerase type II subunit alpha B region 2 domain protein; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like; SPTR: DNA topoisomerase type IIA subunit B region 2 domain protein; polysaccharide export protein complement(1797716..1800217) Runella slithyformis DSM 19594 10870101 YP_004655138.1 CDS Runsl_1581 NC_015703.1 1800655 1802553 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; SPTR: Transposase IS4 family protein; DNA topoisomerase type IIA subunit B domain-containing protein 1800655..1802553 Runella slithyformis DSM 19594 10870102 YP_004655139.1 CDS Runsl_1582 NC_015703.1 1802576 1803922 R COGs: COG3225 ABC-type uncharacterized transport system involved in gliding motility auxiliary component; InterPro IPR019196:IPR019863; KEGG: dfe:Dfer_3719 gliding motility protein, ABC-related protein; PFAM: ABC-type uncharacterised transport system; SPTR: Gliding motility protein, ABC-related protein; TIGRFAM: Gliding-associated ABC transporter substrate-binding GldG; hypothetical protein complement(1802576..1803922) Runella slithyformis DSM 19594 10870103 YP_004655140.1 CDS Runsl_1583 NC_015703.1 1804015 1805646 R PFAM: ABC-type uncharacterized transport system; TIGRFAM: gliding-associated ABC transporter substrate-binding component GldG; COGs: COG3169 conserved hypothetical protein; InterPro IPR007437; KEGG: nde:NIDE0571 hypothetical protein; PFAM: Protein of unknown function DUF486; SPTR: uncharacterized protein; gliding-associated ABC transporter substrate-binding protein GldG complement(1804015..1805646) Runella slithyformis DSM 19594 10870104 YP_004655141.1 CDS Runsl_1584 NC_015703.1 1805706 1806035 R PFAM: Protein of unknown function, DUF486; COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; InterPro IPR006148:IPR003737:IPR018322; KEGG: dfe:Dfer_3813 glucosamine-6-phosphate deaminase-like protein; PFAM: Glucosamine/galactosamine-6-phosphate isomerase; N-acetylglucosaminyl phosphatidylinositol deacetylase; PRIAM: Glucosamine-6-phosphate deaminase; SPTR: Glucosamine-6-phosphate isomerase; TIGRFAM: Glucosamine-6-phosphate isomerase, subgroup; hypothetical protein complement(1805706..1806035) Runella slithyformis DSM 19594 10870105 YP_004655142.1 CDS Runsl_1585 NC_015703.1 1806139 1808067 R PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; GlcNAc-PI de-N-acetylase; TIGRFAM: glucosamine-6-phosphate isomerase; COGs: COG3142 Uncharacterized protein involved in copper resistance; HAMAP: Copper homeostasis protein cutC; InterPro IPR005627; KEGG: sli:Slin_5700 CutC family protein; PFAM: CutC; SPTR: Copper homeostasis protein CutC; glucosamine-6-phosphate isomerase complement(1806139..1808067) Runella slithyformis DSM 19594 10870106 YP_004655143.1 CDS Runsl_1586 NC_015703.1 1808176 1808913 R PFAM: CutC family; COGs: COG5267 conserved hypothetical protein; InterPro IPR014917; KEGG: sli:Slin_1188 hypothetical protein; PFAM: Protein of unknown function DUF1800; SPTR: uncharacterized protein; Copper homeostasis protein cutC complement(1808176..1808913) Runella slithyformis DSM 19594 10870107 YP_004655144.1 CDS Runsl_1587 NC_015703.1 1809137 1810519 D PFAM: Protein of unknown function (DUF1800); COGs: COG4102 conserved hypothetical protein; InterPro IPR010869; KEGG: sli:Slin_1189 hypothetical protein; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein; hypothetical protein 1809137..1810519 Runella slithyformis DSM 19594 10870108 YP_004655145.1 CDS Runsl_1588 NC_015703.1 1810544 1812091 D PFAM: Protein of unknown function (DUF1501); KEGG: dfe:Dfer_3784 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1810544..1812091 Runella slithyformis DSM 19594 10870109 YP_004655146.1 CDS Runsl_1589 NC_015703.1 1812140 1813252 D COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_4568 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; hypothetical protein 1812140..1813252 Runella slithyformis DSM 19594 10870110 YP_004655147.1 CDS Runsl_1590 NC_015703.1 1813305 1815608 D PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TonB-dependent receptor 1813305..1815608 Runella slithyformis DSM 19594 10870111 YP_004655148.1 CDS Runsl_1591 NC_015703.1 1815622 1815714 D COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); HAMAP: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; InterPro IPR003699; KEGG: sli:Slin_1175 S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: Queuosine biosynthesis protein; hypothetical protein 1815622..1815714 Runella slithyformis DSM 19594 10870112 YP_004655149.1 CDS Runsl_1592 NC_015703.1 1815788 1816831 D PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; HAMAP: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro IPR001228; KEGG: sli:Slin_1174 4-diphosphocytidyl-2C-methyl-D-erythritolsynthase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; S-adenosylmethionine:tRNAribosyltransferase- isomerase 1815788..1816831 Runella slithyformis DSM 19594 10870113 YP_004655150.1 CDS Runsl_1593 NC_015703.1 1816919 1817599 D PFAM: Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; COGs: COG1703 periplasmic protein kinase ArgK and related GTPase of G3E family; InterPro IPR005129; KEGG: sli:Slin_1173 LAO/AO transporter ATPase; PFAM: ArgK protein; SPTR: LAO/AO transport system ATPase; TIGRFAM: ArgK protein; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1816919..1817599 Runella slithyformis DSM 19594 10870114 YP_004655151.1 CDS Runsl_1594 NC_015703.1 1817681 1818664 D PFAM: ArgK protein; TIGRFAM: LAO/AO transport system ATPase; LAO/AO transport system ATPase 1817681..1818664 Runella slithyformis DSM 19594 10870115 YP_004655152.1 CDS Runsl_1595 NC_015703.1 1818667 1819575 R KEGG: sli:Slin_5064 hypothetical protein; SPTR: Conserved repeat domain protein; hypothetical protein complement(1818667..1819575) Runella slithyformis DSM 19594 10870116 YP_004655153.1 CDS Runsl_1596 NC_015703.1 1819736 1823164 R PFAM: Pregnancy-associated plasma protein-A; hypothetical protein complement(1819736..1823164) Runella slithyformis DSM 19594 10870117 YP_004655154.1 CDS Runsl_1597 NC_015703.1 1823222 1823341 R COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); HAMAP: Monofunctional biosynthetic peptidoglycan transglycosylase; InterPro IPR001264:IPR011812; KEGG: dfe:Dfer_2412 monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: Glycosyl transferase, family 51; SPTR: Monofunctional biosynthetic peptidoglycan transglycosylase; TIGRFAM: Monofunctional biosynthetic peptidoglycan transglycosylase; manually curated; hypothetical protein complement(1823222..1823341) Runella slithyformis DSM 19594 10870118 YP_004655155.1 CDS Runsl_1598 NC_015703.1 1823418 1824173 R PFAM: Transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR007197:IPR010723:IPR006638:IPR004559; KEGG: sli:Slin_2843 oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM; HemN, C-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: Oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; monofunctional biosynthetic peptidoglycan transglycosylase complement(1823418..1824173) Runella slithyformis DSM 19594 10870119 YP_004655156.1 CDS Runsl_1599 NC_015703.1 1824268 1825422 R PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: sli:Slin_0393 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; oxygen-independent coproporphyrinogen III oxidase complement(1824268..1825422) Runella slithyformis DSM 19594 10870120 YP_004655157.1 CDS Runsl_1600 NC_015703.1 1825450 1826160 R PFAM: OmpA family; KEGG: cly:Celly_1381 hypothetical protein; SPTR: uncharacterized protein; OmpA/MotB domain-containing protein complement(1825450..1826160) Runella slithyformis DSM 19594 10870121 YP_004655158.1 CDS Runsl_1601 NC_015703.1 1826247 1826927 R KEGG: cly:Celly_1381 hypothetical protein; SPTR: Membrane protein; hypothetical protein complement(1826247..1826927) Runella slithyformis DSM 19594 10870122 YP_004655159.1 CDS Runsl_1602 NC_015703.1 1826929 1827591 R COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: cly:Celly_1377 PadR-like family transcriptional regulator; PFAM: Transcriptional regulator PadR N-terminal-like; SPTR: uncharacterized protein; hypothetical protein complement(1826929..1827591) Runella slithyformis DSM 19594 10870123 YP_004655160.1 CDS Runsl_1603 NC_015703.1 1827591 1827929 R PFAM: Transcriptional regulator PadR-like family; KEGG: sli:Slin_6392 hypothetical protein; SPTR: uncharacterized protein; PadR-like family transcriptional regulator complement(1827591..1827929) Runella slithyformis DSM 19594 10870124 YP_004655161.1 CDS Runsl_1604 NC_015703.1 1827987 1828169 R COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: dfe:Dfer_3657 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: Band 7 protein; hypothetical protein complement(1827987..1828169) Runella slithyformis DSM 19594 10870125 YP_004655162.1 CDS Runsl_1605 NC_015703.1 1828265 1829119 R PFAM: SPFH domain / Band 7 family; COGs: COG1190 Lysyl-tRNA synthetase (class II); HAMAP: Lysyl-tRNA synthetase; InterPro IPR004365:IPR004364:IPR002313; KEGG: dfe:Dfer_4009 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: Lysine--tRNA ligase; SPTR: Lysyl-tRNA synthetase; TIGRFAM: Lysyl-tRNA synthetase, class II; hypothetical protein complement(1828265..1829119) Runella slithyformis DSM 19594 10870126 YP_004655163.1 CDS Runsl_1606 NC_015703.1 1829330 1831084 D PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial; COGs: COG1018 Flavodoxin reductase (ferredoxin-NADPH reductase) family 1; InterPro IPR008333:IPR001433:IPR001041; KEGG: cpi:Cpin_0377 ferredoxin; PFAM: Ferredoxin; Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region; PRIAM: Nitric oxide dioxygenase; SPTR: Ferredoxin; lysyl-tRNA synthetase 1829330..1831084 Runella slithyformis DSM 19594 10870127 YP_004655164.1 CDS Runsl_1607 NC_015703.1 1831132 1832169 D PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR000192; KEGG: sli:Slin_1497 cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Cysteine desulfurase; SPTR: Cysteine desulfurase; nitric oxide dioxygenase 1831132..1832169 Runella slithyformis DSM 19594 10870128 YP_004655165.1 CDS Runsl_1608 NC_015703.1 1832166 1833326 R PFAM: Aminotransferase class-V; COGs: COG0429 hydrolase of the alpha/beta-hydrolase fold; InterPro IPR000073; KEGG: sli:Slin_5174 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; cysteine desulfurase complement(1832166..1833326) Runella slithyformis DSM 19594 10870129 YP_004655166.1 CDS Runsl_1609 NC_015703.1 1833525 1834484 D PFAM: alpha/beta hydrolase fold; KEGG: scl:sce2233 hypothetical protein; SPTR: uncharacterized protein; alpha/beta hydrolase 1833525..1834484 Runella slithyformis DSM 19594 10870130 YP_004655167.1 CDS Runsl_1610 NC_015703.1 1834523 1834780 R COGs: COG0431 flavoprotein; InterPro IPR005025; KEGG: mtt:Ftrac_3110 nadph-dependent fmn reductase; PFAM: NADPH-dependent FMN reductase; SPTR: NADPH-dependent FMN reductase; hypothetical protein complement(1834523..1834780) Runella slithyformis DSM 19594 10870131 YP_004655168.1 CDS Runsl_1611 NC_015703.1 1834823 1835347 R PFAM: NADPH-dependent FMN reductase; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: dfe:Dfer_3666 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; NADPH-dependent FMN reductase complement(1834823..1835347) Runella slithyformis DSM 19594 10870132 YP_004655169.1 CDS Runsl_1612 NC_015703.1 1835655 1836185 D PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; InterPro IPR018764; KEGG: dfe:Dfer_3665 hypothetical protein; PFAM: Anti-sigma K factor RskA; SPTR: uncharacterized protein; ECF subfamily RNA polymerase sigma-24 subunit 1835655..1836185 Runella slithyformis DSM 19594 10870133 YP_004655170.1 CDS Runsl_1613 NC_015703.1 1836204 1837775 D PFAM: Anti-sigma-K factor rskA; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR008030; KEGG: lby:Lbys_0127 NmrA family protein; SPTR: NmrA family protein; anti-sigma-K factor RskA 1836204..1837775 Runella slithyformis DSM 19594 10870134 YP_004655171.1 CDS Runsl_1614 NC_015703.1 1837803 1838660 R PFAM: NmrA-like family; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: psn:Pedsa_1651 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; manually curated; NmrA family protein complement(1837803..1838660) Runella slithyformis DSM 19594 10870135 YP_004655172.1 CDS Runsl_1615 NC_015703.1 1838749 1839324 R PFAM: Cyclic nucleotide-binding domain; COGs: COG0348 Polyferredoxin; InterPro IPR001450; KEGG: mtt:Ftrac_3598 hypothetical protein; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: 4Fe-4S binding domain protein; Crp/Fnr family transcriptional regulator complement(1838749..1839324) Runella slithyformis DSM 19594 10870136 YP_004655173.1 CDS Runsl_1616 NC_015703.1 1839329 1840867 R COGs: COG0355 F0F1-type ATP synthase epsilon subunit (mitochondrial delta subunit); InterPro IPR020546; KEGG: dfe:Dfer_3764 H+transporting two-sector ATPase delta/epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; SPTR: H+transporting two-sector ATPase delta/epsilon subunit; 4Fe-4S ferredoxin complement(1839329..1840867) Runella slithyformis DSM 19594 10870137 YP_004655174.1 CDS Runsl_1617 NC_015703.1 1840983 1841222 R PFAM: ATP synthase, Delta/Epsilon chain, beta-sandwich domain; TIGRFAM: ATP synthase, F1 epsilon subunit (delta in mitochondria); COGs: COG0055 F0F1-type ATP synthase beta subunit; HAMAP: ATPase, F1 complex, beta subunit; InterProIPR005722:IPR004100:IPR000194:IPR000793:IPR 003593; KEGG: dfe:Dfer_3763 F0F1 ATP synthase subunit beta; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP synthase subunit beta; TIGRFAM: ATPase, F1 complex, beta subunit; ATPase F1 subunit delta/epsilon subunit complement(1840983..1841222) Runella slithyformis DSM 19594 10870138 YP_004655175.1 CDS Runsl_1618 NC_015703.1 1841239 1842759 R PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATP synthase, F1 beta subunit; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: sli:Slin_3618 histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: Histidine kinase; ATP synthase subunit beta complement(1841239..1842759) Runella slithyformis DSM 19594 10870139 YP_004655176.1 CDS Runsl_1619 NC_015703.1 1843226 1844413 R PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG0373 Glutamyl-tRNA reductase; HAMAP: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; InterPro IPR000343:IPR015895:IPR006151:IPR015896; KEGG: sli:Slin_3619 glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal; SPTR: Glutamyl-tRNA reductase; TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; integral membrane sensor signal transduction histidine kinase complement(1843226..1844413) Runella slithyformis DSM 19594 10870140 YP_004655177.1 CDS Runsl_1620 NC_015703.1 1844829 1846100 D PFAM: Glutamyl-tRNAGlu reductase, N-terminal domain; Shikimate / quinate 5-dehydrogenase; Glutamyl-tRNAGlu reductase, dimerisation domain; TIGRFAM: glutamyl-tRNA reductase; COGs: COG3191 L-aminopeptidase/D-esterase; InterPro IPR005321; KEGG: dfe:Dfer_3571 peptidase S58 DmpA; PFAM: Peptidase S58, DmpA; SPTR: Peptidase S58 DmpA; glutamyl-tRNA reductase 1844829..1846100 Runella slithyformis DSM 19594 10870141 YP_004655178.1 CDS Runsl_1621 NC_015703.1 1846109 1847239 R PFAM: Peptidase S58; KEGG: sli:Slin_4445 hypothetical protein; SPTR: uncharacterized protein; peptidase S58 DmpA complement(1846109..1847239) Runella slithyformis DSM 19594 10870142 YP_004655179.1 CDS Runsl_1622 NC_015703.1 1847480 1849060 D InterPro IPR000923; KEGG: sli:Slin_6137 blue (type 1) copper domain protein; PFAM: Blue (type 1) copper domain; SPTR: Blue (Type 1) copper domain protein; hypothetical protein 1847480..1849060 Runella slithyformis DSM 19594 10870143 YP_004655180.1 CDS Runsl_1623 NC_015703.1 1849135 1851150 R PFAM: Copper binding proteins, plastocyanin/azurin family; COGs: COG0039 Malate/lactate dehydrogenase; HAMAP: Malate dehydrogenase, NAD-dependent; InterPro IPR011275:IPR001236; KEGG: dfe:Dfer_4459 malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; PRIAM: L-lactate dehydrogenase; SPTR: Malate dehydrogenase; TIGRFAM: Malate dehydrogenase, NAD-dependent; blue (type 1) copper domain-containing protein complement(1849135..1851150) Runella slithyformis DSM 19594 10870144 YP_004655181.1 CDS Runsl_1624 NC_015703.1 1851259 1852188 R PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase, NAD-dependent; KEGG: sli:Slin_6050 hypothetical protein; SPTR: uncharacterized protein; malate dehydrogenase complement(1851259..1852188) Runella slithyformis DSM 19594 10870145 YP_004655182.1 CDS Runsl_1625 NC_015703.1 1852604 1853233 D COGs: COG0754 Glutathionylspermidine synthase; InterPro IPR005494; KEGG: sli:Slin_5050 glutathionylspermidine synthase; PFAM: Glutathionylspermidine synthase; SPTR: Glutathionylspermidine synthase; hypothetical protein 1852604..1853233 Runella slithyformis DSM 19594 10870146 YP_004655183.1 CDS Runsl_1626 NC_015703.1 1853335 1854507 D PFAM: Glutathionylspermidine synthase; glutathionylspermidine synthase 1853335..1854507 Runella slithyformis DSM 19594 10870147 YP_004655184.1 CDS Runsl_1627 NC_015703.1 1854529 1854792 R hypothetical protein complement(1854529..1854792) Runella slithyformis DSM 19594 10870148 YP_004655185.1 CDS Runsl_1628 NC_015703.1 1854795 1854971 R COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: sli:Slin_1838 ABC transporter; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; hypothetical protein complement(1854795..1854971) Runella slithyformis DSM 19594 10870149 YP_004655186.1 CDS Runsl_1629 NC_015703.1 1855053 1855739 R PFAM: ABC transporter; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: sli:Slin_1839 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; phosphonate-transporting ATPase complement(1855053..1855739) Runella slithyformis DSM 19594 10870150 YP_004655187.1 CDS Runsl_1630 NC_015703.1 1855821 1857077 R PFAM: Predicted permease; hypothetical protein complement(1855821..1857077) Runella slithyformis DSM 19594 10870151 YP_004655188.1 CDS Runsl_1631 NC_015703.1 1857127 1857540 R COGs: COG0845 Membrane-fusion protein; KEGG: sli:Slin_1840 efflux transporter RND family, MFP subunit; SPTR: Efflux transporter, RND family, MFP subunit; hypothetical protein complement(1857127..1857540) Runella slithyformis DSM 19594 10870152 YP_004655189.1 CDS Runsl_1632 NC_015703.1 1857687 1858793 R COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_1841 hypothetical protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane protein-like protein; RND family efflux transporter MFP subunit complement(1857687..1858793) Runella slithyformis DSM 19594 10870153 YP_004655190.1 CDS Runsl_1633 NC_015703.1 1858826 1860157 R PFAM: Outer membrane efflux protein; KEGG: sli:Slin_5940 hypothetical protein; SPTR: uncharacterized protein; outer membrane efflux protein complement(1858826..1860157) Runella slithyformis DSM 19594 10870154 YP_004655191.1 CDS Runsl_1634 NC_015703.1 1860328 1861239 D KEGG: sli:Slin_6770 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1860328..1861239 Runella slithyformis DSM 19594 10870155 YP_004655192.1 CDS Runsl_1635 NC_015703.1 1861297 1861656 D COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: ppn:Palpr_0551 heavy metal efflux pump, czca family; PFAM: Outer membrane efflux protein; SPTR: Cation efflux system protein CzcA; manually curated; hypothetical protein 1861297..1861656 Runella slithyformis DSM 19594 10870156 YP_004655193.1 CDS Runsl_1636 NC_015703.1 1861755 1862957 D PFAM: Outer membrane efflux protein; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: mag:amb1249 membrane-fusion protein; PFAM: Secretion protein HlyD; SPTR: uncharacterized protein; TIGRFAM: Secretion protein HlyD; outer membrane efflux protein 1861755..1862957 Runella slithyformis DSM 19594 10870157 YP_004655194.1 CDS Runsl_1637 NC_015703.1 1862954 1864768 D PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG3696 silver efflux pump; InterPro IPR001036:IPR004763; KEGG: scl:sce8113 cation efflux system protein; PFAM: Acriflavin resistance protein; SPTR: Cation efflux system protein; TIGRFAM: Heavy metal efflux pump CzcA; RND family efflux transporter MFP subunit 1862954..1864768 Runella slithyformis DSM 19594 10870158 YP_004655195.1 CDS Runsl_1638 NC_015703.1 1864934 1868089 D PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: psn:Pedsa_0531 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; CzcA family heavy metal efflux pump 1864934..1868089 Runella slithyformis DSM 19594 10870159 YP_004655196.1 CDS Runsl_1639 NC_015703.1 1868100 1870517 D PFAM: TonB-dependent Receptor Plug Domain; KEGG: sli:Slin_6747 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 1868100..1870517 Runella slithyformis DSM 19594 10870160 YP_004655197.1 CDS Runsl_1640 NC_015703.1 1870539 1871162 D COGs: COG2217 Cation transport ATPase; InterProIPR008250:IPR005834:IPR006404:IPR006416:IPR 001757; KEGG: dfe:Dfer_1187 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; PRIAM: Zinc-exporting ATPase; SPTR: Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; hypothetical protein 1870539..1871162 Runella slithyformis DSM 19594 10870161 YP_004655198.1 CDS Runsl_1641 NC_015703.1 1871175 1873142 D PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; KEGG: mtt:Ftrac_2349 hypothetical protein; SPTR: uncharacterized protein; heavy metal translocating P-type ATPase 1871175..1873142 Runella slithyformis DSM 19594 10870162 YP_004655199.1 CDS Runsl_1642 NC_015703.1 1873147 1873566 D PFAM: Domain of unknown function (DU1801); COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_5203 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein; hypothetical protein 1873147..1873566 Runella slithyformis DSM 19594 10870163 YP_004655200.1 CDS Runsl_1643 NC_015703.1 1873619 1875646 R PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG0306 Phosphate/sulphate permease; InterPro IPR001204; KEGG: sli:Slin_4985 phosphate transporter; PFAM: Phosphate transporter; SPTR: Phosphate transporter; OmpA/MotB domain-containing protein complement(1873619..1875646) Runella slithyformis DSM 19594 10870164 YP_004655201.1 CDS Runsl_1644 NC_015703.1 1875804 1877222 R PFAM: Phosphate transporter family; KEGG: dfe:Dfer_4010 hypothetical protein; SPTR: uncharacterized protein; phosphate transporter complement(1875804..1877222) Runella slithyformis DSM 19594 10870165 YP_004655202.1 CDS Runsl_1645 NC_015703.1 1877395 1879854 R COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: sli:Slin_4552 aldo/keto reductase; PFAM: Aldo/keto reductase; SPTR: Aldo/keto reductase; hypothetical protein complement(1877395..1879854) Runella slithyformis DSM 19594 10870166 YP_004655203.1 CDS Runsl_1646 NC_015703.1 1879919 1880890 D PFAM: Aldo/keto reductase; COGs: COG4325 membrane protein; InterPro IPR018723; KEGG: alv:Alvin_1166 hypothetical protein; PFAM: Protein of unknown function DUF2254, membrane; SPTR: uncharacterized protein; aldo/keto reductase 1879919..1880890 Runella slithyformis DSM 19594 10870167 YP_004655204.1 CDS Runsl_1647 NC_015703.1 1880941 1882368 R PFAM: Predicted membrane protein (DUF2254); InterPro IPR000620; KEGG: sli:Slin_5227 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: uncharacterized protein; hypothetical protein complement(1880941..1882368) Runella slithyformis DSM 19594 10870168 YP_004655205.1 CDS Runsl_1648 NC_015703.1 1882414 1883313 R PFAM: EamA-like transporter family; COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR002155; KEGG: mtt:Ftrac_1202 acetyl-CoA acetyltransferase; PRIAM: Acetyl-CoA C-acetyltransferase; SPTR: Acetyl-CoA acetyltransferase; TIGRFAM: Thiolase; hypothetical protein complement(1882414..1883313) Runella slithyformis DSM 19594 10870169 YP_004655208.1 CDS Runsl_1651 NC_015703.1 1885366 1885788 R PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein complement(1885366..1885788) Runella slithyformis DSM 19594 10870172 YP_004655209.1 CDS Runsl_1652 NC_015703.1 1885882 1886295 R KEGG: cpw:CPC735_028320 ankyrin repeat containing protein; SPTR: Ankyrin repeat protein; hypothetical protein complement(1885882..1886295) Runella slithyformis DSM 19594 10870173 YP_004655210.1 CDS Runsl_1653 NC_015703.1 1886527 1887516 D COGs: COG0284 Orotidine-5'-phosphate decarboxylase; InterPro IPR001754:IPR011995; KEGG: dfe:Dfer_2966 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase, core; PRIAM: Orotidine-5'-phosphate decarboxylase; SPTR: Orotidine 5'-phosphate decarboxylase; TIGRFAM: Orotidine 5'-phosphate decarboxylase, subfamily 2, core; hypothetical protein 1886527..1887516 Runella slithyformis DSM 19594 10870174 YP_004655211.1 CDS Runsl_1654 NC_015703.1 1887544 1888443 R PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 2; COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: dfe:Dfer_5140 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase; orotidine 5'-phosphate decarboxylase complement(1887544..1888443) Runella slithyformis DSM 19594 10870175 YP_004655212.1 CDS Runsl_1655 NC_015703.1 1888446 1889081 R PFAM: Phosphoglycerate mutase; COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: dfe:Dfer_5139 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; phosphoglycerate mutase complement(1888446..1889081) Runella slithyformis DSM 19594 10870176 YP_004655213.1 CDS Runsl_1656 NC_015703.1 1889104 1889637 D PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1; KEGG: sli:Slin_5813 isoamylase N-terminal domain-containing protein; SPTR: Isoamylase N-terminal domain-containing protein; phenylacetic acid degradation-like protein 1889104..1889637 Runella slithyformis DSM 19594 10870177 YP_004655214.1 CDS Runsl_1657 NC_015703.1 1889695 1890006 R PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); COGs: COG2346 Truncated hemoglobins; InterPro IPR001486; KEGG: mtt:Ftrac_1649 globin; PFAM: Globin, truncated bacterial-like; SPTR: Globin; isoamylase N-terminal domain-containing protein complement(1889695..1890006) Runella slithyformis DSM 19594 10870178 YP_004655215.1 CDS Runsl_1658 NC_015703.1 1890173 1890571 R PFAM: Bacterial-like globin; KEGG: fjo:Fjoh_0927 hypothetical protein; SPTR: uncharacterized protein; globin complement(1890173..1890571) Runella slithyformis DSM 19594 10870179 YP_004655216.1 CDS Runsl_1659 NC_015703.1 1890651 1891115 R PFAM: Protein of unknown function, DUF255; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: lby:Lbys_1558 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; hypothetical protein complement(1890651..1891115) Runella slithyformis DSM 19594 10870180 YP_004655217.1 CDS Runsl_1660 NC_015703.1 1891112 1893406 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; KEGG: sli:Slin_4560 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug complement(1891112..1893406) Runella slithyformis DSM 19594 10870181 YP_004655218.1 CDS Runsl_1661 NC_015703.1 1893495 1893878 R KEGG: mxa:MXAN_1582 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1893495..1893878) Runella slithyformis DSM 19594 10870182 YP_004655219.1 CDS Runsl_1662 NC_015703.1 1893996 1894409 D COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR005481:IPR005479:IPR005482; KEGG: sli:Slin_3536 carbamoyl-phosphate synthase L chain ATP-binding protein; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; PRIAM: Pyruvate carboxylase; SPTR: Carbamoyl-phosphate synthase L chain ATP-binding protein; hypothetical protein 1893996..1894409 Runella slithyformis DSM 19594 10870183 YP_004655220.1 CDS Runsl_1663 NC_015703.1 1894475 1895974 R PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit; Prodigal; manually curated; pyruvate carboxylase complement(1894475..1895974) Runella slithyformis DSM 19594 10870184 YP_004655221.1 CDS Runsl_1665 NC_015703.1 1896654 1897295 D PFAM: AhpC/TSA family; InterPro IPR001173; KEGG: sli:Slin_5753 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; alkyl hydroperoxide reductase 1896654..1897295 Runella slithyformis DSM 19594 10870186 YP_004655222.1 CDS Runsl_1666 NC_015703.1 1897359 1898102 R PFAM: Glycosyl transferase 2; COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR006963:IPR006656:IPR006657; KEGG: dmr:Deima_1224 nitrate reductase; PFAM: Molydopterin dinucleotide-binding region; Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; PRIAM: Nitrate reductase; SPTR: Oxidoreductase, molybdopterin-binding; family 2 glycosyl transferase complement(1897359..1898102) Runella slithyformis DSM 19594 10870187 YP_004655223.1 CDS Runsl_1667 NC_015703.1 1898159 1900276 R PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; COGs: COG0254 Ribosomal protein L31; HAMAP: 50S ribosomal protein L31 type B; InterPro IPR002150; KEGG: lby:Lbys_1177 lsu ribosomal protein l31p; PFAM: Ribosomal protein L31; SPTR: 50S ribosomal protein L31 type B; TIGRFAM: Ribosomal protein L31; nitrate reductase complement(1898159..1900276) Runella slithyformis DSM 19594 10870188 YP_004655224.1 CDS Runsl_1668 NC_015703.1 1900506 1900748 D PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31; InterPro IPR001123; KEGG: scl:sce2066 LysE type translocator; PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: LysE type translocator; 50S ribosomal protein L31 1900506..1900748 Runella slithyformis DSM 19594 10870189 YP_004655225.1 CDS Runsl_1669 NC_015703.1 1900823 1901452 R PFAM: LysE type translocator; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_4562 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; lysine exporter protein LysE/YggA complement(1900823..1901452) Runella slithyformis DSM 19594 10870190 YP_004655226.1 CDS Runsl_1670 NC_015703.1 1901482 1902249 R PFAM: short chain dehydrogenase; COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: sli:Slin_0093 sodium symporter; PFAM: Bile acid:sodium symporter; SPTR: Bile acid:sodium symporter; 3-oxoacyl-ACP reductase complement(1901482..1902249) Runella slithyformis DSM 19594 10870191 YP_004655227.1 CDS Runsl_1671 NC_015703.1 1902267 1903202 R PFAM: Sodium Bile acid symporter family; TIGRFAM: bile acid transporter; COGs: COG0505 Carbamoylphosphate synthase small subunit; InterPro IPR002474:IPR000991:IPR006274; KEGG: dfe:Dfer_4372 carbamoyl phosphate synthase small subunit; PFAM: Glutamine amidotransferase class-I, C-terminal; Carbamoyl phosphate synthase, small subunit, N-terminal; PRIAM: Carbamoyl-phosphate synthase (glutamine-hydrolyzing); SPTR: Carbamoyl-phosphate synthase, small subunit; TIGRFAM: Carbamoyl phosphate synthase, small subunit; bile acid:sodium symporter complement(1902267..1903202) Runella slithyformis DSM 19594 10870192 YP_004655228.1 CDS Runsl_1672 NC_015703.1 1903478 1904656 R PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit; COGs: COG0203 Ribosomal protein L17; HAMAP: 50S ribosomal protein L17; InterPro IPR000456; KEGG: dfe:Dfer_4371 ribosomal protein L17; PFAM: Ribosomal protein L17; SPTR: 50S ribosomal protein L17; TIGRFAM: Ribosomal protein L17; carbamoyl-phosphate synthase small subunit complement(1903478..1904656) Runella slithyformis DSM 19594 10870193 YP_004655229.1 CDS Runsl_1673 NC_015703.1 1904761 1905528 R PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17; COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit; HAMAP: DNA-directed RNA polymerase, alpha subunit; InterProIPR011773:IPR011261:IPR011262:IPR011260:IPR 011263; KEGG: sli:Slin_5760 DNA-directed RNA polymerase, subunit alpha; PFAM: DNA-directed RNA polymerase, insert; DNA-directed RNA polymerase, dimerisation; RNA polymerase, alpha subunit, C-terminal; SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; SPTR: DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; 50S ribosomal protein L17 complement(1904761..1905528) Runella slithyformis DSM 19594 10870194 YP_004655230.1 CDS Runsl_1674 NC_015703.1 1905669 1906658 R PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type; COGs: COG0522 Ribosomal protein S4 and related protein; InterPro IPR001912:IPR002942:IPR005709; KEGG: sli:Slin_5761 ribosomal protein S4; PFAM: Ribosomal protein S4; RNA-binding S4; SMART: RNA-binding S4; SPTR: 30S ribosomal protein S4; TIGRFAM: Ribosomal protein S4, bacterial-type; DNA-directed RNA polymerase subunit alpha complement(1905669..1906658) Runella slithyformis DSM 19594 10870195 YP_004655231.1 CDS Runsl_1675 NC_015703.1 1906788 1907399 R PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type; COGs: COG0100 Ribosomal protein S11; InterPro IPR001971:IPR019981; KEGG: dfe:Dfer_4368 30S ribosomal protein S11; PFAM: Ribosomal protein S11; SPTR: 30S ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type; 30S ribosomal protein S4 complement(1906788..1907399) Runella slithyformis DSM 19594 10870196 YP_004655232.1 CDS Runsl_1676 NC_015703.1 1907503 1907898 R PFAM: Ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; COGs: COG0099 Ribosomal protein S13; InterPro IPR001892:IPR019980; KEGG: dfe:Dfer_4367 30S ribosomal protein S13; PFAM: Ribosomal protein S13; SPTR: 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; 30S ribosomal protein S11 complement(1907503..1907898) Runella slithyformis DSM 19594 10870197 YP_004655233.1 CDS Runsl_1677 NC_015703.1 1908004 1908381 R PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13; HAMAP: Ribosomal protein L36; InterPro IPR000473; KEGG: psn:Pedsa_2125 LSU ribosomal protein L36P; PFAM: Ribosomal protein L36; SPTR: 50S ribosomal protein L36; TIGRFAM: Ribosomal protein L36; manually curated; 30S ribosomal protein S13 complement(1908004..1908381) Runella slithyformis DSM 19594 10870198 YP_004655234.1 CDS Runsl_1678 NC_015703.1 1908391 1908507 R PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type; COGs: COG0361 Translation initiation factor 1 (IF-1); HAMAP: Translation initiation factor IF-1; InterPro IPR004368:IPR006196; KEGG: sli:Slin_5765 translation initiation factor IF-1; PFAM: S1, IF1 type; SPTR: Translation initiation factor IF-1; TIGRFAM: Translation initiation factor IF-1; 50S ribosomal protein L36 complement(1908391..1908507) Runella slithyformis DSM 19594 10870199 YP_004655235.1 CDS Runsl_1679 NC_015703.1 1908618 1908836 R PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1; COGs: COG0024 Methionine aminopeptidase; InterPro IPR000994:IPR002467; KEGG: sli:Slin_5766 methionine aminopeptidase, type I; PFAM: Peptidase M24, structural domain; PRIAM: Methionyl aminopeptidase; SPTR: Methionine aminopeptidase; TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; translation initiation factor IF-1 complement(1908618..1908836) Runella slithyformis DSM 19594 10870200 YP_004655236.1 CDS Runsl_1680 NC_015703.1 1908859 1909662 R PFAM: Metallopeptidase M24; TIGRFAM: methionine aminopeptidase, type I; COGs: COG0201 Preprotein translocase subunit SecY; InterPro IPR002208; KEGG: dfe:Dfer_4363 preprotein translocase subunit SecY; PFAM: SecY protein; SPTR: Preprotein translocase, SecY subunit; TIGRFAM: SecY protein; methionine aminopeptidase complement(1908859..1909662) Runella slithyformis DSM 19594 10870201 YP_004655237.1 CDS Runsl_1681 NC_015703.1 1909662 1910975 R PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit; COGs: COG0200 Ribosomal protein L15; InterPro IPR001196:IPR005749; KEGG: sli:Slin_5768 ribosomal protein L15; PFAM: Ribosomal protein L15; SPTR: 50S ribosomal protein L15; TIGRFAM: Ribosomal protein L15, bacterial-type; preprotein translocase subunit SecY complement(1909662..1910975) Runella slithyformis DSM 19594 10870202 YP_004655238.1 CDS Runsl_1682 NC_015703.1 1911036 1911482 R PFAM: Ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle; COGs: COG1841 Ribosomal protein L30/L7E; InterPro IPR000517:IPR005996; KEGG: dfe:Dfer_4361 ribosomal protein L30; PFAM: Ribosomal protein L30p/L7e, conserved region; SPTR: 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; 50S ribosomal protein L15 complement(1911036..1911482) Runella slithyformis DSM 19594 10870203 YP_004655239.1 CDS Runsl_1683 NC_015703.1 1911496 1911675 R PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle; COGs: COG0098 Ribosomal protein S5; InterPro IPR013810:IPR005324:IPR005712; KEGG: sli:Slin_5770 ribosomal protein S5; PFAM: Ribosomal protein S5, N-terminal; Ribosomal protein S5, C-terminal; SPTR: 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; 50S ribosomal protein L30 complement(1911496..1911675) Runella slithyformis DSM 19594 10870204 YP_004655240.1 CDS Runsl_1684 NC_015703.1 1911688 1912203 R PFAM: Ribosomal protein S5, C-terminal domain; Ribosomal protein S5, N-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type; COGs: COG0256 Ribosomal protein L18; InterPro IPR005484:IPR004389; KEGG: dfe:Dfer_4359 ribosomal protein L18; PFAM: Ribosomal protein L18/L5; SPTR: 50S ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; 30S ribosomal protein S5 complement(1911688..1912203) Runella slithyformis DSM 19594 10870205 YP_004655241.1 CDS Runsl_1685 NC_015703.1 1912210 1912566 R PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type; COGs: COG0097 Ribosomal protein L6P/L9E; InterPro IPR020040:IPR019906; KEGG: sli:Slin_5772 ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain; SPTR: 50S ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type; 50S ribosomal protein L18 complement(1912210..1912566) Runella slithyformis DSM 19594 10870206 YP_004655242.1 CDS Runsl_1686 NC_015703.1 1912594 1913151 R PFAM: Ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type; COGs: COG0096 Ribosomal protein S8; InterPro IPR000630; KEGG: sli:Slin_5773 ribosomal protein S8; PFAM: Ribosomal protein S8; SPTR: 30S ribosomal protein S8; 50S ribosomal protein L6 complement(1912594..1913151) Runella slithyformis DSM 19594 10870207 YP_004655243.1 CDS Runsl_1687 NC_015703.1 1913171 1913569 R PFAM: Ribosomal protein S8; COGs: COG0199 Ribosomal protein S14; HAMAP: 30S ribosomal protein S14; InterPro IPR001209; KEGG: sli:Slin_5774 ribosomal protein S14; PFAM: Ribosomal protein S14; SPTR: 30S ribosomal protein S14; 30S ribosomal protein S8 complement(1913171..1913569) Runella slithyformis DSM 19594 10870208 YP_004655244.1 CDS Runsl_1688 NC_015703.1 1913647 1913916 R PFAM: Ribosomal protein S14p/S29e; COGs: COG0094 Ribosomal protein L5; InterPro IPR002132; KEGG: sli:Slin_5775 ribosomal protein L5; PFAM: Ribosomal protein L5; SPTR: 50S ribosomal protein L5; 30S ribosomal protein S14 complement(1913647..1913916) Runella slithyformis DSM 19594 10870209 YP_004655245.1 CDS Runsl_1689 NC_015703.1 1913944 1914498 R PFAM: ribosomal L5P family C-terminus; Ribosomal protein L5; COGs: COG0198 Ribosomal protein L24; InterPro IPR005824:IPR003256; KEGG: lby:Lbys_1819 lsu ribosomal protein l24p; PFAM: KOW; SMART: KOW; SPTR: 50S ribosomal protein L24; TIGRFAM: Ribosomal protein L24; 50S ribosomal protein L5 complement(1913944..1914498) Runella slithyformis DSM 19594 10870210 YP_004655246.1 CDS Runsl_1690 NC_015703.1 1914583 1914936 R PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle; COGs: COG0093 Ribosomal protein L14; InterPro IPR000218:IPR005745; KEGG: shg:Sph21_1725 ribosomal protein L14; PFAM: Ribosomal protein L14b/L23e; SPTR: 50S ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type; 50S ribosomal protein L24 complement(1914583..1914936) Runella slithyformis DSM 19594 10870211 YP_004655247.1 CDS Runsl_1691 NC_015703.1 1914942 1915310 R PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle; COGs: COG0186 Ribosomal protein S17; InterPro IPR000266:IPR019984; KEGG: sli:Slin_5778 30S ribosomal protein S17; PFAM: Ribosomal protein S17; SPTR: 30S ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; 50S ribosomal protein L14 complement(1914942..1915310) Runella slithyformis DSM 19594 10870212 YP_004655248.1 CDS Runsl_1692 NC_015703.1 1915313 1915597 R PFAM: Ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; InterPro IPR001854; KEGG: chu:CHU_3154 50S ribosomal protein L29; PFAM: Ribosomal protein L29; SPTR: 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29; 30S ribosomal protein S17 complement(1915313..1915597) Runella slithyformis DSM 19594 10870213 YP_004655249.1 CDS Runsl_1693 NC_015703.1 1915637 1915837 R PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; COGs: COG0197 Ribosomal protein L16/L10E; HAMAP: Ribosomal protein L16; InterPro IPR000114:IPR016180; KEGG: dfe:Dfer_4350 50S ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; SPTR: 50S ribosomal protein L16; TIGRFAM: Ribosomal protein L16; 50S ribosomal protein L29 complement(1915637..1915837) Runella slithyformis DSM 19594 10870214 YP_004655250.1 CDS Runsl_1694 NC_015703.1 1915849 1916283 R PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle; COGs: COG0092 Ribosomal protein S3; InterProIPR008282:IPR004044:IPR001351:IPR004087:IPR 005704; KEGG: dfe:Dfer_4349 30S ribosomal protein S3; PFAM: Ribosomal protein S3, C-terminal; Ribosomal protein S3, N-terminal; K Homology, type 2; SMART: K Homology; SPTR: 30S ribosomal protein S3; TIGRFAM: Ribosomal protein S3, bacterial; 50S ribosomal protein L16 complement(1915849..1916283) Runella slithyformis DSM 19594 10870215 YP_004655251.1 CDS Runsl_1695 NC_015703.1 1916331 1917185 R PFAM: KH domain; Ribosomal protein S3, C-terminal domain; Ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type; COGs: COG0091 Ribosomal protein L22; InterPro IPR001063:IPR005727; KEGG: dfe:Dfer_4348 ribosomal protein L22; PFAM: Ribosomal protein L22/L17; SPTR: 50S ribosomal protein L22; TIGRFAM: Ribosomal protein L22, bacterial-type; 30S ribosomal protein S3 complement(1916331..1917185) Runella slithyformis DSM 19594 10870216 YP_004655252.1 CDS Runsl_1696 NC_015703.1 1917199 1917564 R PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type; COGs: COG0185 Ribosomal protein S19; InterPro IPR002222:IPR005732; KEGG: mtt:Ftrac_3036 SSU ribosomal protein s19p; PFAM: Ribosomal protein S19/S15; SPTR: 30S ribosomal protein S19; TIGRFAM: Ribosomal protein S19, bacterial-type; 50S ribosomal protein L22 complement(1917199..1917564) Runella slithyformis DSM 19594 10870217 YP_004655253.1 CDS Runsl_1697 NC_015703.1 1917642 1917920 R PFAM: Ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle; COGs: COG0090 Ribosomal protein L2; InterPro IPR002171:IPR005880; KEGG: dfe:Dfer_4346 ribosomal protein L2; PFAM: Ribosomal protein L2; SPTR: 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; 30S ribosomal protein S19 complement(1917642..1917920) Runella slithyformis DSM 19594 10870218 YP_004655254.1 CDS Runsl_1698 NC_015703.1 1917931 1918755 R PFAM: Ribosomal Proteins L2, RNA binding domain; Ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar; COGs: COG0089 Ribosomal protein L23; InterPro IPR013025; KEGG: lby:Lbys_1828 lsu ribosomal protein l23p; PFAM: Ribosomal protein L25/L23; SPTR: 50S ribosomal protein L23; 50S ribosomal protein L2 complement(1917931..1918755) Runella slithyformis DSM 19594 10870219 YP_004655255.1 CDS Runsl_1699 NC_015703.1 1918792 1919082 R PFAM: Ribosomal protein L23; COGs: COG0088 Ribosomal protein L4; InterPro IPR002136; KEGG: dfe:Dfer_4344 50S ribosomal protein L4; PFAM: Ribosomal protein L4/L1e; SPTR: 50S ribosomal protein L4; 50S ribosomal protein L25 complement(1918792..1919082) Runella slithyformis DSM 19594 10870220 YP_004655256.1 CDS Runsl_1700 NC_015703.1 1919087 1919716 R PFAM: Ribosomal protein L4/L1 family; TIGRFAM: 50S ribosomal protein L4, bacterial/organelle; COGs: COG0087 Ribosomal protein L3; InterPro IPR000597:IPR019927; KEGG: dfe:Dfer_4343 50S ribosomal protein L3; PFAM: Ribosomal protein L3; SPTR: 50S ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; 50S ribosomal protein L4 complement(1919087..1919716) Runella slithyformis DSM 19594 10870221 YP_004655257.1 CDS Runsl_1701 NC_015703.1 1919755 1920375 R PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial; 50S ribosomal protein L3 complement(1919755..1920375) Runella slithyformis DSM 19594 10870222 YP_004655258.1 CDS Runsl_1702 NC_015703.1 1920554 1920673 D KEGG: dfe:Dfer_4259 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1920554..1920673 Runella slithyformis DSM 19594 10870223 YP_004655259.1 CDS Runsl_1703 NC_015703.1 1920818 1921675 D COGs: COG0788 Formyltetrahydrofolate hydrolase; InterPro IPR002912:IPR002376:IPR004810; KEGG: dfe:Dfer_3669 formyltetrahydrofolate deformylase; PFAM: Formyl transferase, N-terminal; Amino acid-binding ACT; PRIAM: Formyltetrahydrofolate deformylase; SPTR: Formyltetrahydrofolate deformylase; TIGRFAM: Formyltetrahydrofolate deformylase; hypothetical protein 1920818..1921675 Runella slithyformis DSM 19594 10870224 YP_004655260.1 CDS Runsl_1704 NC_015703.1 1921755 1922582 D PFAM: Formyl transferase; TIGRFAM: formyltetrahydrofolate deformylase; COGs: COG4146 symporter; InterPro IPR001734:IPR019900; KEGG: dfe:Dfer_3072 SSS sodium solute transporter superfamily; PFAM: Sodium/solute symporter; SPTR: SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup; formyltetrahydrofolate deformylase 1921755..1922582 Runella slithyformis DSM 19594 10870225 YP_004655261.1 CDS Runsl_1705 NC_015703.1 1922679 1924292 D PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; COGs: COG5267 conserved hypothetical protein; InterPro IPR014917; KEGG: sli:Slin_5993 hypothetical protein; PFAM: Protein of unknown function DUF1800; SPTR: uncharacterized protein; sodium solute transporter superfamily protein 1922679..1924292 Runella slithyformis DSM 19594 10870226 YP_004655262.1 CDS Runsl_1706 NC_015703.1 1924419 1925852 D PFAM: Protein of unknown function (DUF1800); COGs: COG4102 conserved hypothetical protein; InterPro IPR010869; KEGG: sli:Slin_5994 hypothetical protein; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein; hypothetical protein 1924419..1925852 Runella slithyformis DSM 19594 10870227 YP_004655263.1 CDS Runsl_1707 NC_015703.1 1925878 1927080 D PFAM: Protein of unknown function (DUF1501); COGs: COG1778 Low specificity phosphatase (HAD superfamily); KEGG: sli:Slin_2801 low specificity phosphatase (HAD superfamily)-like protein; SPTR: Low specificity phosphatase (HAD superfamily)-like protein; hypothetical protein 1925878..1927080 Runella slithyformis DSM 19594 10870228 YP_004655264.1 CDS Runsl_1708 NC_015703.1 1927193 1927915 D COGs: COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase; HAMAP: NAD(P)H-quinone oxidoreductase subunit K; InterPro IPR006137:IPR006138; KEGG: dfe:Dfer_2472 NADH-quinone oxidoreductase, B subunit; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit B 1; TIGRFAM: NADH:ubiquinone oxidoreductase, 20kDa subunit; low specificity phosphatase (HAD superfamily)-like protein 1927193..1927915 Runella slithyformis DSM 19594 10870229 YP_004655265.1 CDS Runsl_1709 NC_015703.1 1927920 1928474 D PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; COGs: COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit J; InterPro IPR001268:IPR010218; KEGG: sli:Slin_6042 NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit; SPTR: NADH-quinone oxidoreductase subunit C 2; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; NAD(P)H-quinone oxidoreductase subunit K 1927920..1928474 Runella slithyformis DSM 19594 10870230 YP_004655266.1 CDS Runsl_1710 NC_015703.1 1928464 1928961 D PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; KEGG: dfe:Dfer_3979 hypothetical protein; SPTR: uncharacterized protein; NAD(P)H-quinone oxidoreductase subunit J 1928464..1928961 Runella slithyformis DSM 19594 10870231 YP_004655267.1 CDS Runsl_1711 NC_015703.1 1929102 1929323 D PFAM: Protein of unknown function (DUF2795); hypothetical protein 1929102..1929323 Runella slithyformis DSM 19594 10870232 YP_004655268.1 CDS Runsl_1712 NC_015703.1 1934889 1935245 R COGs: COG0599 gamma-carboxymuconolactone decarboxylase subunit; InterPro IPR003779; KEGG: mtt:Ftrac_2384 alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; SPTR: Carboxymuconolactone decarboxylase; hypothetical protein complement(1934889..1935245) Runella slithyformis DSM 19594 10870238 YP_004655269.1 CDS Runsl_1713 NC_015703.1 1935293 1935637 R PFAM: Carboxymuconolactone decarboxylase; TIGRFAM: alkylhydroperoxidase AhpD family core domain; KEGG: sli:Slin_1861 hypothetical protein; SPTR: uncharacterized protein; carboxymuconolactone decarboxylase complement(1935293..1935637) Runella slithyformis DSM 19594 10870239 YP_004655270.1 CDS Runsl_1714 NC_015703.1 1935662 1938349 R PFAM: Mannosyl oligosaccharide glucosidase; COGs: COG0775 Nucleoside phosphorylase; InterPro IPR000845:IPR010049; KEGG: sli:Slin_0223 adenosylhomocysteine nucleosidase; PFAM: Nucleoside phosphorylase; PRIAM: Adenosylhomocysteine nucleosidase; SPTR: Adenosylhomocysteine nucleosidase; TIGRFAM: MTA/SAH nucleosidase; hypothetical protein complement(1935662..1938349) Runella slithyformis DSM 19594 10870240 YP_004655271.1 CDS Runsl_1715 NC_015703.1 1938453 1939289 D PFAM: Phosphorylase superfamily; TIGRFAM: futalosine nucleosidase; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; KEGG: psl:Psta_1770 hypothetical protein; SPTR: uncharacterized protein; MTA/SAH nucleosidase 1938453..1939289 Runella slithyformis DSM 19594 10870241 YP_004655272.1 CDS Runsl_1716 NC_015703.1 1939341 1940900 D PFAM: Neutral/alkaline non-lysosomal ceramidase; COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022; KEGG: dfe:Dfer_3637 propionyl-CoA carboxylase; PFAM: Carboxyl transferase; PRIAM: Methylcrotonoyl-CoA carboxylase; SPTR: Propionyl-CoA carboxylase; hypothetical protein 1939341..1940900 Runella slithyformis DSM 19594 10870242 YP_004655273.1 CDS Runsl_1717 NC_015703.1 1940962 1942590 D PFAM: Carboxyl transferase domain; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sat:SYN_02665 glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase; methylcrotonoyl-CoA carboxylase 1940962..1942590 Runella slithyformis DSM 19594 10870243 YP_004655274.1 CDS Runsl_1718 NC_015703.1 1942619 1943398 D PFAM: Glycosyl transferase 2; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: nde:NIDE2697 capsular polysaccharide biosynthesis glycosyltransferase CapM; PFAM: Glycosyl transferase, group 1; SPTR: Capsular polysaccharide biosynthesis glycosyltransferase CapM; family 2 glycosyl transferase 1942619..1943398 Runella slithyformis DSM 19594 10870244 YP_004655275.1 CDS Runsl_1719 NC_015703.1 1943467 1944654 D PFAM: Glycosyl transferases group 1; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: ran:Riean_0747 sugar transferase; PFAM: Bacterial sugar transferase; SPTR: General glycosylation pathway protein; group 1 glycosyl transferase 1943467..1944654 Runella slithyformis DSM 19594 10870245 YP_004655276.1 CDS Runsl_1720 NC_015703.1 1944641 1945252 D PFAM: Bacterial sugar transferase; COGs: COG0663 Carbonic anhydrase/acetyltransferase isoleucine patch superfamily; InterPro IPR001451:IPR020019; KEGG: dfe:Dfer_3630 hexapeptide repeat-containing protein acetyltransferase; SPTR: Hexapeptide repeat-containing protein acetyltransferase; TIGRFAM: Sialic acid O-acyltransferase, NeuD; sugar transferase 1944641..1945252 Runella slithyformis DSM 19594 10870246 YP_004655277.1 CDS Runsl_1721 NC_015703.1 1945254 1945856 D TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; KEGG: dfe:Dfer_4242 hypothetical protein; SPTR: uncharacterized protein; sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family 1945254..1945856 Runella slithyformis DSM 19594 10870247 YP_004655278.1 CDS Runsl_1722 NC_015703.1 1945843 1946175 R PFAM: Protein of unknown function (DUF1469); COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; HAMAP: UbiE/COQ5 methyltransferase; InterPro IPR004033; KEGG: dfe:Dfer_4023 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; SPTR: Menaquinone biosynthesis methyltransferase ubiE; TIGRFAM: UbiE/COQ5 methyltransferase; hypothetical protein complement(1945843..1946175) Runella slithyformis DSM 19594 10870248 YP_004655279.1 CDS Runsl_1723 NC_015703.1 1946378 1947100 D PFAM: ubiE/COQ5 methyltransferase; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; KEGG: dfe:Dfer_4024 PorT-related protein; SPTR: PorT-related protein; ubiquinone/menaquinone biosynthesis methyltransferase ubiE 1946378..1947100 Runella slithyformis DSM 19594 10870249 YP_004655280.1 CDS Runsl_1724 NC_015703.1 1947049 1947783 D COGs: COG3491 Isopenicillin N synthase and related dioxygenase; InterPro IPR005123; KEGG: dfe:Dfer_2706 2OG-Fe(II) oxygenase; PFAM: Oxoglutarate/iron-dependent oxygenase; SPTR: 2OG-Fe(II) oxygenase; PorT-like protein 1947049..1947783 Runella slithyformis DSM 19594 10870250 YP_004655281.1 CDS Runsl_1725 NC_015703.1 1947936 1948895 D PFAM: 2OG-Fe(II) oxygenase superfamily; COGs: COG2059 Chromate transport protein ChrA; InterPro IPR003370:IPR014047; KEGG: sli:Slin_1603 chromate transporter chromate ion transporter (CHR) family; PFAM: Chromate transporter region; SPTR: Chromate transporter, chromate ion transporter (CHR) family; TIGRFAM: Chromate transporter; 2OG-Fe(II) oxygenase 1947936..1948895 Runella slithyformis DSM 19594 10870251 YP_004655282.1 CDS Runsl_1726 NC_015703.1 1948986 1950191 D PFAM: Chromate transporter; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; InterPro IPR019500; KEGG: psn:Pedsa_0497 peptidase S46; PFAM: Peptidase S46; SPTR: Peptidase S46; chromate ion transporter family chromate transporter 1948986..1950191 Runella slithyformis DSM 19594 10870252 YP_004655283.1 CDS Runsl_1727 NC_015703.1 1950233 1952383 D PFAM: Peptidase S46; COGs: COG1160 GTPase; HAMAP: GTP-binding, EngA; InterPro IPR016484:IPR002917:IPR005225; KEGG: sli:Slin_5226 ribosome-associated GTPase EngA; PFAM: GTP-binding protein, HSR1-related; SPTR: GTP-binding protein engA; TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; peptidase S46 1950233..1952383 Runella slithyformis DSM 19594 10870253 YP_004655284.1 CDS Runsl_1728 NC_015703.1 1952446 1953753 R PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain; InterPro IPR008815; KEGG: psn:Pedsa_3189 S23 ribosomal protein; PFAM: 23S rRNA-associated protein; SPTR: S23 ribosomal protein; GTP-binding protein engA complement(1952446..1953753) Runella slithyformis DSM 19594 10870254 YP_004655285.1 CDS Runsl_1729 NC_015703.1 1953800 1954162 R PFAM: S23 ribosomal protein; COGs: COG1159 GTPase; HAMAP: GTP-binding protein Era; InterPro IPR005662:IPR002917:IPR004044:IPR005225; KEGG: dfe:Dfer_3856 GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2; SPTR: GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; S23 ribosomal protein complement(1953800..1954162) Runella slithyformis DSM 19594 10870255 YP_004655286.1 CDS Runsl_1730 NC_015703.1 1954198 1955181 R PFAM: KH domain; GTPase of unknown function; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain; GTP-binding protein Era complement(1954198..1955181) Runella slithyformis DSM 19594 10870256 YP_004655287.1 CDS Runsl_1731 NC_015703.1 1955453 1955815 D COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: cao:Celal_2798 transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase; hypothetical protein 1955453..1955815 Runella slithyformis DSM 19594 10870258 YP_004655288.1 CDS Runsl_1732 NC_015703.1 1955796 1956779 D PFAM: Transposase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: sli:Slin_1698 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1955796..1956779 Runella slithyformis DSM 19594 10870259 YP_004655289.1 CDS Runsl_1733 NC_015703.1 1957428 1958525 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839; KEGG: dfe:Dfer_3258 glycine C-acetyltransferase; PFAM: Aminotransferase, class I/II; PRIAM: Glycine C-acetyltransferase; SPTR: Glycine C-acetyltransferase; oxidoreductase domain-containing protein complement(1957428..1958525) Runella slithyformis DSM 19594 10870260 YP_004655290.1 CDS Runsl_1734 NC_015703.1 1958639 1959907 R PFAM: Aminotransferase class I and II; KEGG: dfe:Dfer_3229 hypothetical protein; SPTR: uncharacterized protein; glycine C-acetyltransferase complement(1958639..1959907) Runella slithyformis DSM 19594 10870261 YP_004655291.1 CDS Runsl_1735 NC_015703.1 1960136 1960474 D KEGG: bca:BCE_5389 O-antigen polymerase (wzy); SPTR: O-antigen polymerase (Wzy); hypothetical protein 1960136..1960474 Runella slithyformis DSM 19594 10870262 YP_004655292.1 CDS Runsl_1736 NC_015703.1 1960485 1961771 R PFAM: O-Antigen ligase; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: tmt:Tmath_0930 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; hypothetical protein complement(1960485..1961771) Runella slithyformis DSM 19594 10870263 YP_004655293.1 CDS Runsl_1737 NC_015703.1 1961830 1962966 R PFAM: Glycosyl transferases group 1; InterPro IPR013216; KEGG: chu:CHU_1562 SAM-dependent methyltransferase; PFAM: Methyltransferase type 11; SPTR: SAM-dependent methyltransferase; group 1 glycosyl transferase complement(1961830..1962966) Runella slithyformis DSM 19594 10870264 YP_004655294.1 CDS Runsl_1738 NC_015703.1 1962963 1963730 R PFAM: Methyltransferase domain; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: naz:Aazo_4909 group 1 glycosyl transferase; PFAM: Glycosyl transferase, group 1; SPTR: Group 1 glycosyl transferase; type 11 methyltransferase complement(1962963..1963730) Runella slithyformis DSM 19594 10870265 YP_004655295.1 CDS Runsl_1739 NC_015703.1 1963884 1964930 R PFAM: Glycosyl transferases group 1; COGs: COG3458 Acetyl esterase (deacetylase); InterPro IPR008391; KEGG: dfe:Dfer_1236 acetyl xylan esterase; PFAM: Acetyl xylan esterase; PRIAM: Cephalosporin-C deacetylase; SPTR: Acetyl xylan esterase; group 1 glycosyl transferase complement(1963884..1964930) Runella slithyformis DSM 19594 10870266 YP_004655296.1 CDS Runsl_1740 NC_015703.1 1965013 1966374 D PFAM: Acetyl xylan esterase (AXE1); COGs: COG1983 stress-responsive transcriptional regulator protein; InterPro IPR007168; KEGG: dfe:Dfer_3554 phage shock protein C, PspC; PFAM: PspC; SPTR: Phage shock protein C, PspC; cephalosporin-C deacetylase 1965013..1966374 Runella slithyformis DSM 19594 10870267 YP_004655297.1 CDS Runsl_1741 NC_015703.1 1966423 1966656 R PFAM: PspC domain; COGs: COG1735 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR001559; KEGG: dfe:Dfer_5616 aryldialkylphosphatase; PFAM: Aryldialkylphosphatase; SPTR: Aryldialkylphosphatase; phage shock protein PspC complement(1966423..1966656) Runella slithyformis DSM 19594 10870268 YP_004655298.1 CDS Runsl_1742 NC_015703.1 1966815 1967810 R PFAM: Phosphotriesterase; InterPro IPR005202; KEGG: sur:STAUR_0635 GRAs-like transcription factor; PFAM: GRAS transcription factor; SPTR: GAI protein; aryldialkylphosphatase complement(1966815..1967810) Runella slithyformis DSM 19594 10870269 YP_004655299.1 CDS Runsl_1743 NC_015703.1 1967826 1968743 R PFAM: GRAS family transcription factor; COGs: COG4634 conserved hypothetical protein; KEGG: tra:Trad_0710 hypothetical protein; SPTR: uncharacterized protein; manually curated; GRAS transcription factor complement(1967826..1968743) Runella slithyformis DSM 19594 10870270 YP_004655300.1 CDS Runsl_1744 NC_015703.1 1968728 1969003 R COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: fjo:Fjoh_4961 hypothetical protein; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein; hypothetical protein complement(1968728..1969003) Runella slithyformis DSM 19594 10870271 YP_004655301.1 CDS Runsl_1745 NC_015703.1 1969003 1969317 R PFAM: Protein of unknown function (DUF433); COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176:IPR006108:IPR001753; KEGG: dfe:Dfer_3526 3-hydroxyacyl-CoA dehydrogenase NAD-binding; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; SPTR: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; hypothetical protein complement(1969003..1969317) Runella slithyformis DSM 19594 10870272 YP_004655302.1 CDS Runsl_1746 NC_015703.1 1969367 1971769 R PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; 3-hydroxyacyl-CoA dehydrogenase complement(1969367..1971769) Runella slithyformis DSM 19594 10870273 YP_004655303.1 CDS Runsl_1747 NC_015703.1 1971888 1972043 R COGs: COG0216 Protein chain release factor A; HAMAP: Peptide chain release factor 1; InterPro IPR004373:IPR005139:IPR000352; KEGG: sli:Slin_4995 peptide chain release factor 1; PFAM: Class I peptide chain release factor; Peptide chain release factor; SPTR: Peptide chain release factor 1; TIGRFAM: Peptide chain release factor 1; hypothetical protein complement(1971888..1972043) Runella slithyformis DSM 19594 10870274 YP_004655304.1 CDS Runsl_1748 NC_015703.1 1972053 1973129 D PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1; COGs: COG3592 conserved hypothetical protein; InterPro IPR010693:IPR018967:IPR006622; KEGG: sli:Slin_1437 hypothetical protein; PFAM: Ferredoxin soy-like; Iron sulphur domain-containing, CDGSH-type; SPTR: uncharacterized protein; peptide chain release factor 1 1972053..1973129 Runella slithyformis DSM 19594 10870275 YP_004655305.1 CDS Runsl_1749 NC_015703.1 1973205 1973633 D PFAM: Iron-binding zinc finger CDGSH type; Protein of unknown function (DUF1271); COGs: COG4299 conserved hypothetical protein; InterPro IPR019259; KEGG: sli:Slin_6602 heparan-alpha-glucosaminide N-acetyltransferase; PFAM: Protein of unknown function DUF2261, transmembrane; SPTR: Heparan-alpha-glucosaminide N-acetyltransferase; hypothetical protein 1973205..1973633 Runella slithyformis DSM 19594 10870276 YP_004655306.1 CDS Runsl_1750 NC_015703.1 1973731 1974855 D InterPro IPR014883; KEGG: sli:Slin_3132 VRR-NUC domain protein; PFAM: VRR-NUC; SPTR: VRR-NUC domain protein; hypothetical protein 1973731..1974855 Runella slithyformis DSM 19594 10870277 YP_004655307.1 CDS Runsl_1751 NC_015703.1 1974920 1976785 R PFAM: VRR-NUC domain; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_5600 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein; VRR-NUC domain-containing protein complement(1974920..1976785) Runella slithyformis DSM 19594 10870278 YP_004655308.1 CDS Runsl_1752 NC_015703.1 1976973 1978538 D PFAM: WD40-like Beta Propeller Repeat; OmpA family; KEGG: dfe:Dfer_2958 hypothetical protein; SPTR: uncharacterized protein; OmpA/MotB domain-containing protein 1976973..1978538 Runella slithyformis DSM 19594 10870279 YP_004655309.1 CDS Runsl_1753 NC_015703.1 1978585 1978989 R COGs: COG0572 Uridine kinase; KEGG: lby:Lbys_3327 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1978585..1978989) Runella slithyformis DSM 19594 10870280 YP_004655310.1 CDS Runsl_1754 NC_015703.1 1979073 1979588 R PFAM: Phosphoribulokinase / Uridine kinase; COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: sli:Slin_1076 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase domain protein; hypothetical protein complement(1979073..1979588) Runella slithyformis DSM 19594 10870281 YP_004655311.1 CDS Runsl_1755 NC_015703.1 1979725 1981518 R PFAM: Acyl-CoA dehydrogenase N terminal; Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR000674:IPR008274:IPR006311; KEGG: dfe:Dfer_0019 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; butyryl-CoA dehydrogenase complement(1979725..1981518) Runella slithyformis DSM 19594 10870282 YP_004655312.1 CDS Runsl_1756 NC_015703.1 1981706 1983859 R PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; InterPro IPR001041:IPR002888; KEGG: sli:Slin_5426 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; Ferredoxin; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: (2Fe-2S)-binding domain protein; isoquinoline 1-oxidoreductase complement(1981706..1983859) Runella slithyformis DSM 19594 10870283 YP_004655313.1 CDS Runsl_1757 NC_015703.1 1983913 1984401 R PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain; COGs: COG2360 Leu/Phe-tRNA-protein transferase; HAMAP: Leucyl/phenylalanyl-tRNA-protein transferase; InterPro IPR004616; KEGG: sli:Slin_0427 leucyl/phenylalanyl-tRNA/protein transferase; PFAM: Leucyl/phenylalanyl-tRNA-protein transferase; PRIAM: Leucyltransferase; SPTR: Leucyl/phenylalanyl-tRNA--protein transferase; TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase; isoquinoline 1-oxidoreductase complement(1983913..1984401) Runella slithyformis DSM 19594 10870284 YP_004655314.1 CDS Runsl_1758 NC_015703.1 1984612 1985181 R PFAM: Leucyl/phenylalanyl-tRNA protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA--protein transferase; COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: sli:Slin_5748 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family; leucyl/phenylalanyl-tRNA--protein transferase complement(1984612..1985181) Runella slithyformis DSM 19594 10870285 YP_004655315.1 CDS Runsl_1759 NC_015703.1 1985236 1985931 D PFAM: GDSL-like Lipase/Acylhydrolase; COGs: COG0017 Aspartyl/asparaginyl-tRNA synthetase; HAMAP: Asparaginyl-tRNA synthetase; InterPro IPR004365:IPR004364:IPR004522; KEGG: dfe:Dfer_4215 asparaginyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: Asparagine--tRNA ligase; SPTR: Asparaginyl-tRNA synthetase; TIGRFAM: Asparaginyl-tRNA synthetase, class IIb; G-D-S-L family lipolytic protein 1985236..1985931 Runella slithyformis DSM 19594 10870286 YP_004655316.1 CDS Runsl_1760 NC_015703.1 1986376 1987827 D PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: asparaginyl-tRNA synthetase; KEGG: lby:Lbys_2582 hypothetical protein; SPTR: uncharacterized protein; asparaginyl-tRNA synthetase 1986376..1987827 Runella slithyformis DSM 19594 10870287 YP_004655317.1 CDS Runsl_1761 NC_015703.1 1987955 1988275 D PFAM: Protein of unknown function (DUF3467); COGs: COG3781 membrane protein; InterPro IPR007913; KEGG: cpi:Cpin_2003 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1987955..1988275 Runella slithyformis DSM 19594 10870288 YP_004655318.1 CDS Runsl_1762 NC_015703.1 1988308 1989171 D PFAM: Bestrophin; COGs: COG0540 Aspartate carbamoyltransferase catalytic chain; HAMAP: Aspartate carbamoyltransferase; InterPro IPR006132:IPR006131:IPR002082; KEGG: dfe:Dfer_2657 aspartate carbamoyltransferase catalytic subunit; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; PRIAM: Aspartate carbamoyltransferase; SPTR: Aspartate carbamoyltransferase; TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; hypothetical protein 1988308..1989171 Runella slithyformis DSM 19594 10870289 YP_004655319.1 CDS Runsl_1763 NC_015703.1 1989259 1990179 D PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase; InterPro IPR006710:IPR000421; KEGG: cpi:Cpin_1751 coagulation factor 5/8 type domain protein; PFAM: Coagulation factor 5/8 type, C-terminal; Glycoside hydrolase, family 43; SPTR: Coagulation factor 5/8 type domain protein; aspartate carbamoyltransferase 1989259..1990179 Runella slithyformis DSM 19594 10870290 YP_004655320.1 CDS Runsl_1764 NC_015703.1 1990209 1991957 D PFAM: F5/8 type C domain; Glycosyl hydrolases family 43; COGs: COG2352 Phosphoenolpyruvate carboxylase; InterPro IPR001449; KEGG: dfe:Dfer_3929 phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase; PRIAM: Phosphoenolpyruvate carboxylase; SPTR: Phosphoenolpyruvate carboxylase; coagulation factor 5/8 type domain-containing protein 1990209..1991957 Runella slithyformis DSM 19594 10870291 YP_004655321.1 CDS Runsl_1765 NC_015703.1 1992018 1994591 R PFAM: Phosphoenolpyruvate carboxylase; KEGG: sli:Slin_5160 hypothetical protein; SPTR: uncharacterized protein; phosphoenolpyruvate carboxylase complement(1992018..1994591) Runella slithyformis DSM 19594 10870292 YP_004655322.1 CDS Runsl_1766 NC_015703.1 1994813 1996927 D hypothetical protein 1994813..1996927 Runella slithyformis DSM 19594 10870293 YP_004655323.1 CDS Runsl_1767 NC_015703.1 1996949 1997143 D COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; HAMAP: Phospho-N-acetylmuramoyl-pentapeptide transferase; InterPro IPR003524:IPR018480:IPR018481; KEGG: dfe:Dfer_3519 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; SPTR:Phospho-N-acetylmuramoyl-pentapeptide-transfer ase; TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; hypothetical protein 1996949..1997143 Runella slithyformis DSM 19594 10870294 YP_004655324.1 CDS Runsl_1768 NC_015703.1 1997363 1998646 D PFAM: Glycosyl transferase 4; Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; InterPro IPR013078; KEGG: sli:Slin_4770 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase; phospho-N-acetylmuramoyl-pentapeptide- transferase 1997363..1998646 Runella slithyformis DSM 19594 10870295 YP_004655325.1 CDS Runsl_1769 NC_015703.1 1998679 1999218 R PFAM: Phosphoglycerate mutase; KEGG: dfe:Dfer_3805 tetratricopeptide domain protein; SPTR: Tetratricopeptide domain protein; phosphoglycerate mutase complement(1998679..1999218) Runella slithyformis DSM 19594 10870296 YP_004655326.1 CDS Runsl_1770 NC_015703.1 1999236 2001227 R KEGG: dfe:Dfer_3804 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(1999236..2001227) Runella slithyformis DSM 19594 10870297 YP_004655327.1 CDS Runsl_1771 NC_015703.1 2001632 2003305 R COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; HAMAP: Glucose-inhibited division protein A; InterPro IPR004416:IPR002218; KEGG: dfe:Dfer_3802 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: Glucose-inhibited division protein A-related; SPTR: tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; TIGRFAM: Glucose-inhibited division protein A; hypothetical protein complement(2001632..2003305) Runella slithyformis DSM 19594 10870298 YP_004655328.1 CDS Runsl_1772 NC_015703.1 2003780 2005642 R PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A; COGs: COG0319 metal-dependent hydrolase; HAMAP: Uncharacterised protein family UPF0054; InterPro IPR002036; KEGG: dfe:Dfer_3801 protein of unknown function UPF0054; PFAM: Uncharacterised protein family UPF0054; SPTR: Probable rRNA maturation factor; TIGRFAM: Uncharacterised protein family UPF0054; tRNA uridine 5-carboxymethylaminomethyl modification protein MnmG complement(2003780..2005642) Runella slithyformis DSM 19594 10870299 YP_004655329.1 CDS Runsl_1773 NC_015703.1 2005751 2006164 R PFAM: Uncharacterized protein family UPF0054; TIGRFAM: metalloprotein, YbeY/UPF0054 family; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: sli:Slin_4391 radical SAM protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein; metalloprotease ybeY complement(2005751..2006164) Runella slithyformis DSM 19594 10870300 YP_004655330.1 CDS Runsl_1774 NC_015703.1 2006267 2007277 R PFAM: Radical SAM superfamily; COGs: COG0777 Acetyl-CoA carboxylase beta subunit; HAMAP: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; InterPro IPR000022:IPR000438; KEGG: sli:Slin_4392 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: Carboxyl transferase; PRIAM: Acetyl-CoA carboxylase; SPTR: Acetyl-CoA carboxylase, carboxyl transferase, beta subunit; TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; radical SAM protein complement(2006267..2007277) Runella slithyformis DSM 19594 10870301 YP_004655331.1 CDS Runsl_1775 NC_015703.1 2007318 2008160 R PFAM: Carboxyl transferase domain; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; COGs: COG4912 DNA alkylation repair protein; InterPro IPR014825; KEGG: pdi:BDI_2958 hypothetical protein; PFAM: DNA alkylation repair enzyme; SPTR: uncharacterized protein; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta complement(2007318..2008160) Runella slithyformis DSM 19594 10870302 YP_004655332.1 CDS Runsl_1776 NC_015703.1 2008301 2009002 R PFAM: DNA alkylation repair enzyme; COGs: COG0206 Cell division GTPase; InterPro IPR003008:IPR018316:IPR000158; KEGG: sli:Slin_4756 cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; SPTR: Cell division protein ftsZ; TIGRFAM: Cell division protein FtsZ, N-terminal; DNA alkylation repair protein complement(2008301..2009002) Runella slithyformis DSM 19594 10870303 YP_004655333.1 CDS Runsl_1777 NC_015703.1 2009009 2010511 R PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ; COGs: COG0849 Actin-like ATPase involved in cell division; InterPro IPR003494:IPR020823; KEGG: sli:Slin_4755 cell division protein FtsA; PFAM: Cell division protein FtsA domain; SPTR: Cell division protein FtsA; TIGRFAM: Cell division protein family FtsA; cell division protein FtsZ complement(2009009..2010511) Runella slithyformis DSM 19594 10870304 YP_004655334.1 CDS Runsl_1778 NC_015703.1 2010620 2011915 R PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA; KEGG: sli:Slin_4754 hypothetical protein; SPTR: uncharacterized protein; cell division protein FtsA complement(2010620..2011915) Runella slithyformis DSM 19594 10870305 YP_004655335.1 CDS Runsl_1779 NC_015703.1 2011930 2012697 R COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; InterPro IPR005758:IPR000713:IPR013221:IPR004101; KEGG: sli:Slin_4753 UDP-N-acetylmuramate/alanine ligase; PFAM: Mur ligase, C-terminal; Mur ligase, central; Mur ligase, N-terminal; PRIAM: UDP-N-acetylmuramate--L-alanine ligase; SPTR: UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate-alanine ligase; hypothetical protein complement(2011930..2012697) Runella slithyformis DSM 19594 10870306 YP_004655336.1 CDS Runsl_1780 NC_015703.1 2012755 2014143 R PFAM: Mur ligase, glutamate ligase domain; Mur ligase, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate--alanine ligase; COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; HAMAP:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; InterPro IPR004276:IPR007235:IPR006009; KEGG: dfe:Dfer_3488 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyl transferase, family 28, C-terminal; Glycosyl transferase, family 28; SPTR:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: N-acetylglucosaminyltransferase, MurG; UDP-N-acetylmuramate--L-alanine ligase complement(2012755..2014143) Runella slithyformis DSM 19594 10870307 YP_004655337.1 CDS Runsl_1781 NC_015703.1 2014192 2015286 R PFAM: Glycosyltransferase 28 C-terminal domain; Glycosyltransferase 28 N-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: sli:Slin_4751 cell cycle protein; PFAM: Cell cycle protein; SPTR: Cell cycle protein; UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase complement(2014192..2015286) Runella slithyformis DSM 19594 10870308 YP_004655338.1 CDS Runsl_1782 NC_015703.1 2015354 2016529 R PFAM: Cell cycle protein; COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; InterPro IPR005762:IPR013221:IPR004101; KEGG: sli:Slin_4750 UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase, central; Mur ligase, C-terminal; PRIAM: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; SPTR: UDP-N-acetylmuramoylalanine--D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; cell cycle protein complement(2015354..2016529) Runella slithyformis DSM 19594 10870309 YP_004655339.1 CDS Runsl_1783 NC_015703.1 2016534 2017898 R PFAM: Mur ligase, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; KEGG: dfe:Dfer_3699 hypothetical protein; SPTR: uncharacterized protein; UDP-N-acetylmuramoylalanine--D-glutamate ligase complement(2016534..2017898) Runella slithyformis DSM 19594 10870310 YP_004655340.1 CDS Runsl_1784 NC_015703.1 2018272 2019780 R PFAM: Planctomycete cytochrome C; KEGG: sli:Slin_4556 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2018272..2019780) Runella slithyformis DSM 19594 10870311 YP_004655341.1 CDS Runsl_1785 NC_015703.1 2019777 2021765 R PFAM: Alpha-L-fucosidase; COGs: COG0509 Glycine cleavage system H protein (lipoate-binding); HAMAP: Glycine cleavage H-protein; InterPro IPR002930:IPR017453; KEGG: mtt:Ftrac_3338 glycine cleavage system H protein; PFAM: Glycine cleavage H-protein; SPTR: Glycine cleavage system H protein; TIGRFAM: Glycine cleavage H-protein, subgroup; hypothetical protein complement(2019777..2021765) Runella slithyformis DSM 19594 10870312 YP_004655342.1 CDS Runsl_1786 NC_015703.1 2021958 2022335 D PFAM: Glycine cleavage H-protein; TIGRFAM: glycine cleavage system H protein; COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR006680:IPR004722; KEGG: dfe:Dfer_4467 dihydroorotase, multifunctional complex type; PFAM: Amidohydrolase 1; SPTR: Dihydroorotase, multifunctional complex type; TIGRFAM: Dihydroorotase multifunctional complex type; glycine cleavage system H protein 2021958..2022335 Runella slithyformis DSM 19594 10870313 YP_004655343.1 CDS Runsl_1787 NC_015703.1 2022407 2023678 D TIGRFAM: dihydroorotase, multifunctional complex type; KEGG: dfe:Dfer_4468 hypothetical protein; SPTR: uncharacterized protein; dihydroorotase, multifunctional complex type 2022407..2023678 Runella slithyformis DSM 19594 10870314 YP_004655344.1 CDS Runsl_1788 NC_015703.1 2023694 2024233 D InterPro IPR001623; KEGG: sli:Slin_4457 hypothetical protein; PFAM: Heat shock protein DnaJ, N-terminal; SPTR: uncharacterized protein; hypothetical protein 2023694..2024233 Runella slithyformis DSM 19594 10870315 YP_004655345.1 CDS Runsl_1789 NC_015703.1 2024238 2025338 D PFAM: DnaJ domain; molecular chaperone DnaJ 2024238..2025338 Runella slithyformis DSM 19594 10870316 YP_004655346.1 CDS Runsl_1790 NC_015703.1 2025976 2026383 D hypothetical protein 2025976..2026383 Runella slithyformis DSM 19594 10870317 YP_004655347.1 CDS Runsl_1791 NC_015703.1 2026393 2026515 R COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_0982 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; hypothetical protein complement(2026393..2026515) Runella slithyformis DSM 19594 10870318 YP_004655348.1 CDS Runsl_1792 NC_015703.1 2026553 2027635 D PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036:IPR004764; KEGG: dfe:Dfer_0981 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: Acriflavin resistance protein; SPTR: Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; RND family efflux transporter MFP subunit 2026553..2027635 Runella slithyformis DSM 19594 10870319 YP_004655349.1 CDS Runsl_1793 NC_015703.1 2027713 2030868 D PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; COGs: COG1538 Outer membrane protein; InterPro IPR003423:IPR010131; KEGG: dfe:Dfer_0980 RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; SPTR: RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 2027713..2030868 Runella slithyformis DSM 19594 10870320 YP_004655350.1 CDS Runsl_1794 NC_015703.1 2030873 2032297 D PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; KEGG: sli:Slin_1064 hypothetical protein; SPTR: uncharacterized protein; NodT family RND efflux system outer membrane lipoprotein 2030873..2032297 Runella slithyformis DSM 19594 10870321 YP_004655351.1 CDS Runsl_1795 NC_015703.1 2032383 2032832 D manually curated; hypothetical protein 2032383..2032832 Runella slithyformis DSM 19594 10870322 YP_004655352.1 CDS Runsl_1796 NC_015703.1 2032953 2034030 D PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2; KEGG: sli:Slin_4506 hypothetical protein; SPTR: uncharacterized protein; peptide chain release factor 2 join(2032953..2033012,2033014..2034030) Runella slithyformis DSM 19594 10870323 YP_004655353.1 CDS Runsl_1797 NC_015703.1 2034134 2035459 R PFAM: SusD family; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: sli:Slin_4505 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein complement(2034134..2035459) Runella slithyformis DSM 19594 10870324 YP_004655354.1 CDS Runsl_1798 NC_015703.1 2035481 2038666 R PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR014036; KEGG: psn:Pedsa_1847 transcriptional regulator, DeoR family; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal; SPTR: Transcriptional regulator, DeoR family; TonB-dependent receptor plug complement(2035481..2038666) Runella slithyformis DSM 19594 10870325 YP_004655355.1 CDS Runsl_1799 NC_015703.1 2038882 2039646 D PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain; KEGG: dfe:Dfer_3742 hypothetical protein; SPTR: uncharacterized protein; DeoR family transcriptional regulator 2038882..2039646 Runella slithyformis DSM 19594 10870326 YP_004655356.1 CDS Runsl_1800 NC_015703.1 2039671 2040909 R COGs: COG0634 Hypoxanthine-guanine phosphoribosyltransferase; InterPro IPR000836:IPR005904; KEGG: dfe:Dfer_3743 hypoxanthine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; PRIAM: Hypoxanthine phosphoribosyltransferase; SPTR: Hypoxanthine phosphoribosyltransferase; TIGRFAM: Hypoxanthine phosphoribosyl transferase; hypothetical protein complement(2039671..2040909) Runella slithyformis DSM 19594 10870327 YP_004655357.1 CDS Runsl_1801 NC_015703.1 2041006 2041536 D PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase; KEGG: dfe:Dfer_4235 hypothetical protein; SPTR: uncharacterized protein; hypoxanthine phosphoribosyltransferase 2041006..2041536 Runella slithyformis DSM 19594 10870328 YP_004655358.1 CDS Runsl_1802 NC_015703.1 2041583 2042191 D COGs: COG0308 Aminopeptidase N; KEGG: sli:Slin_5083 aminopeptidase; SPTR: aminopeptidase; hypothetical protein 2041583..2042191 Runella slithyformis DSM 19594 10870329 YP_004655359.1 CDS Runsl_1803 NC_015703.1 2042284 2044656 D InterPro IPR000866; KEGG: sli:Slin_4277 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; aminopeptidase 2042284..2044656 Runella slithyformis DSM 19594 10870330 YP_004655360.1 CDS Runsl_1804 NC_015703.1 2044787 2046166 D PFAM: AhpC/TSA family; KEGG: dfe:Dfer_2635 hypothetical protein; SPTR: uncharacterized protein; alkyl hydroperoxide reductase 2044787..2046166 Runella slithyformis DSM 19594 10870331 YP_004655361.1 CDS Runsl_1805 NC_015703.1 2046148 2046831 R KEGG: sli:Slin_0108 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2046148..2046831) Runella slithyformis DSM 19594 10870332 YP_004655362.1 CDS Runsl_1806 NC_015703.1 2046983 2049013 D COGs: COG4826 Serine protease inhibitor; InterPro IPR000215; KEGG: sli:Slin_5492 proteinase inhibitor I4 serpin; PFAM: Protease inhibitor I4, serpin; SMART: Protease inhibitor I4, serpin; SPTR: Proteinase inhibitor I4 serpin; hypothetical protein 2046983..2049013 Runella slithyformis DSM 19594 10870333 YP_004655363.1 CDS Runsl_1807 NC_015703.1 2049104 2050357 R PFAM: Serpin (serine protease inhibitor); COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: dfe:Dfer_3459 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; proteinase inhibitor I4 serpin complement(2049104..2050357) Runella slithyformis DSM 19594 10870334 YP_004655364.1 CDS Runsl_1808 NC_015703.1 2050492 2051085 D PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: dfe:Dfer_3458 hypothetical protein; SPTR: uncharacterized protein; ECF subfamily RNA polymerase sigma-24 subunit 2050492..2051085 Runella slithyformis DSM 19594 10870335 YP_004655365.1 CDS Runsl_1809 NC_015703.1 2051088 2051951 D KEGG: dfe:Dfer_3457 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2051088..2051951 Runella slithyformis DSM 19594 10870336 YP_004655366.1 CDS Runsl_1810 NC_015703.1 2051959 2053035 D hypothetical protein 2051959..2053035 Runella slithyformis DSM 19594 10870337 YP_004655367.1 CDS Runsl_1811 NC_015703.1 2053759 2054946 D PFAM: Elongation factor Tu C-terminal domain; Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU; COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011622:IPR011712:IPR003594; KEGG: sli:Slin_6490 ATP-binding region ATPase domain protein; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; Diverse 7TM receptor, extracellular region 2; SPTR: ATP-binding region ATPase domain protein; translation elongation factor Tu 2053759..2054946 Runella slithyformis DSM 19594 10870341 YP_004655368.1 CDS Runsl_1812 NC_015703.1 2055046 2056926 D PFAM: Histidine kinase; 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; 7TMR-DISM extracellular 2; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: sli:Slin_4881 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; signal transduction histidine kinase 2055046..2056926 Runella slithyformis DSM 19594 10870342 YP_004655369.1 CDS Runsl_1813 NC_015703.1 2056965 2058173 D PFAM: Major Facilitator Superfamily; TIGRFAM: Multidrug resistance protein; major facilitator superfamily protein 2056965..2058173 Runella slithyformis DSM 19594 10870343 YP_004655370.1 CDS Runsl_1814 NC_015703.1 2058335 2058526 D PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial; COGs: COG0250 Transcription antiterminator; InterPro IPR006645:IPR005824:IPR001062; KEGG: dfe:Dfer_3454 NusG antitermination factor; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; SMART: Transcription antitermination protein, NusG, N-terminal; KOW; SPTR: Transcription antitermination protein nusG; TIGRFAM: Transcription antitermination protein, NusG; preprotein translocase subunit SecE 2058335..2058526 Runella slithyformis DSM 19594 10870345 YP_004655371.1 CDS Runsl_1815 NC_015703.1 2058563 2059117 D PFAM: Transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG; COGs: COG0080 Ribosomal protein L11; InterPro IPR020784:IPR020783:IPR000911:IPR006519; KEGG: dfe:Dfer_3453 50S ribosomal protein L11; PFAM: Ribosomal protein L11, C-terminal; Ribosomal protein L11, N-terminal; SMART: Ribosomal protein L11; SPTR: 50S ribosomal protein L11; TIGRFAM: Ribosomal protein L11, bacterial-type; NusG antitermination factor 2058563..2059117 Runella slithyformis DSM 19594 10870346 YP_004655372.1 CDS Runsl_1816 NC_015703.1 2059218 2059661 D PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11; COGs: COG0081 Ribosomal protein L1; InterPro IPR002143:IPR005878; KEGG: dfe:Dfer_3452 50S ribosomal protein L1; PFAM: Ribosomal protein L1; SPTR: 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; 50S ribosomal protein L11 2059218..2059661 Runella slithyformis DSM 19594 10870347 YP_004655373.1 CDS Runsl_1817 NC_015703.1 2059693 2060391 D PFAM: Ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast; COGs: COG0244 Ribosomal protein L10; HAMAP: 50S ribosomal protein L10; InterPro IPR001790; KEGG: sli:Slin_4479 ribosomal protein L10; PFAM: Ribosomal protein L10; SPTR: 50S ribosomal protein L10; manually curated; 50S ribosomal protein L1 2059693..2060391 Runella slithyformis DSM 19594 10870348 YP_004655374.1 CDS Runsl_1818 NC_015703.1 2060394 2060927 D PFAM: Ribosomal protein L10; COGs: COG0222 Ribosomal protein L7/L12; HAMAP: Ribosomal protein L7/L12; InterPro IPR000206:IPR013823; KEGG: sli:Slin_4478 ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal; SPTR: 50S ribosomal protein L7/L12; TIGRFAM: Ribosomal protein L7/L12; 50S ribosomal protein L10 2060394..2060927 Runella slithyformis DSM 19594 10870349 YP_004655375.1 CDS Runsl_1819 NC_015703.1 2061042 2061422 D PFAM: Ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12; COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; HAMAP: DNA-directed RNA polymerase subunit beta; InterProIPR007644:IPR007642:IPR007645:IPR019462:IPR 007120:IPR007641:IPR010243; KEGG: dfe:Dfer_3449 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 2; RNA polymerase, beta subunit, protrusion; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 7; SPTR: DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; 50S ribosomal protein L7/L12 2061042..2061422 Runella slithyformis DSM 19594 10870350 YP_004655376.1 CDS Runsl_1820 NC_015703.1 2061713 2065672 D PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit; COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; HAMAP: DNA-directed RNA polymerase subunit beta'; InterProIPR007080:IPR000722:IPR007066:IPR007083:IPR 007081:IPR006592:IPR012754; KEGG: dfe:Dfer_3448 DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5; SMART: RNA polymerase, N-terminal; SPTR: DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; DNA-directed RNA polymerase subunit beta 2061713..2065672 Runella slithyformis DSM 19594 10870351 YP_004655377.1 CDS Runsl_1821 NC_015703.1 2065709 2070079 D PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 3; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form; COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015883; KEGG: sli:Slin_2031 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Beta-N-acetylhexosaminidase; DNA-directed RNA polymerase subunit beta' 2065709..2070079 Runella slithyformis DSM 19594 10870352 YP_004655378.1 CDS Runsl_1822 NC_015703.1 2070218 2072527 D PFAM: F5/8 type C domain; Glycosyl hydrolase 20, catalytic domain; Glycosyl hydrolase 20, domain 2; KEGG: fbc:FB2170_13081 cAMP-binding protein; SPTR: cAMP-binding protein-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; manually curated; beta-N-acetylhexosaminidase 2070218..2072527 Runella slithyformis DSM 19594 10870353 YP_004655379.1 CDS Runsl_1823 NC_015703.1 2072625 2073137 D cAMP-binding protein 2072625..2073137 Runella slithyformis DSM 19594 10870354 YP_004655380.1 CDS Runsl_1824 NC_015703.1 2073315 2073959 D InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3569 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; manually curated; hypothetical protein 2073315..2073959 Runella slithyformis DSM 19594 10870355 YP_004655381.1 CDS Runsl_1825 NC_015703.1 2074309 2076669 D PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; KEGG: dfe:Dfer_3570 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 2074309..2076669 Runella slithyformis DSM 19594 10870356 YP_004655382.1 CDS Runsl_1826 NC_015703.1 2076695 2077615 D COGs: COG1119 ABC-type molybdenum transport system ATPase component/photorepair protein PhrA; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_2971 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; hypothetical protein 2076695..2077615 Runella slithyformis DSM 19594 10870357 YP_004655383.1 CDS Runsl_1827 NC_015703.1 2077703 2079244 R PFAM: ABC transporter; COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: sli:Slin_1392 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; PRIAM: (R)-benzylsuccinyl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase domain protein; ABC transporter complement(2077703..2079244) Runella slithyformis DSM 19594 10870358 YP_004655384.1 CDS Runsl_1828 NC_015703.1 2079391 2080608 D PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; COGs: COG2968 conserved hypothetical protein; InterPro IPR007497; KEGG: dfe:Dfer_3934 protein of unknown function DUF541; PFAM: Protein of unknown function DUF541; SPTR: uncharacterized protein; (R)-benzylsuccinyl-CoA dehydrogenase 2079391..2080608 Runella slithyformis DSM 19594 10870359 YP_004655385.1 CDS Runsl_1829 NC_015703.1 2080678 2081397 R PFAM: Protein of unknown function (DUF541); COGs: COG1649 conserved hypothetical protein; InterPro IPR003790:IPR003961; KEGG: psn:Pedsa_3319 protein of unknown function DUF187; PFAM: Protein of unknown function DUF187; Fibronectin, type III; SMART: Fibronectin, type III; SPTR: uncharacterized protein; hypothetical protein complement(2080678..2081397) Runella slithyformis DSM 19594 10870360 YP_004655386.1 CDS Runsl_1830 NC_015703.1 2081474 2083411 R PFAM: Uncharacterised BCR, COG1649; Fibronectin type III domain; SPTR: Predicted protein; hypothetical protein complement(2081474..2083411) Runella slithyformis DSM 19594 10870361 YP_004655387.1 CDS Runsl_1831 NC_015703.1 2083841 2085700 R PFAM: Response regulator receiver domain; hypothetical protein complement(2083841..2085700) Runella slithyformis DSM 19594 10870362 YP_004655388.1 CDS Runsl_1832 NC_015703.1 2085684 2086229 R InterPro IPR000477; KEGG: cyt:cce_1086 RNA-directed DNA polymerase; PFAM: RNA-directed DNA polymerase (reverse transcriptase); PRIAM: RNA-directed DNA polymerase; SPTR: Probable RNA-directed DNA polymerase; hypothetical protein complement(2085684..2086229) Runella slithyformis DSM 19594 10870363 YP_004655389.1 CDS Runsl_1833 NC_015703.1 2086233 2088230 R PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); RNA-directed DNA polymerase complement(2086233..2088230) Runella slithyformis DSM 19594 10870364 YP_004655390.1 CDS Runsl_1834 NC_015703.1 2088493 2088723 R COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; KEGG: rbi:RB2501_07070 helicase; SPTR: Helicase; hypothetical protein complement(2088493..2088723) Runella slithyformis DSM 19594 10870365 YP_004655391.1 CDS Runsl_1835 NC_015703.1 2088760 2090109 R PFAM: PIF1 helicase; COGs: COG2378 transcriptional regulator protein; InterPro IPR013196; KEGG: cly:Celly_1289 transcriptional regulator-like protein; SPTR: uncharacterized protein; helicase complement(2088760..2090109) Runella slithyformis DSM 19594 10870366 YP_004655392.1 CDS Runsl_1836 NC_015703.1 2090217 2091197 D PFAM: HTH domain; KEGG: bth:BT_1796 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2090217..2091197 Runella slithyformis DSM 19594 10870367 YP_004655393.1 CDS Runsl_1837 NC_015703.1 2091249 2093840 R COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: dfe:Dfer_4619 protein of unknown function DUF433; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein; hypothetical protein complement(2091249..2093840) Runella slithyformis DSM 19594 10870368 YP_004655394.1 CDS Runsl_1838 NC_015703.1 2094128 2094373 R PFAM: Protein of unknown function (DUF433); COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: dfe:Dfer_3947 aminopeptidase precursor; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; SPTR: Aminopeptidase; hypothetical protein complement(2094128..2094373) Runella slithyformis DSM 19594 10870369 YP_004655395.1 CDS Runsl_1839 NC_015703.1 2094483 2096462 R PFAM: Peptidase M1; COGs: COG0523 GTPase (G3E family); InterPro IPR003495:IPR011629; KEGG: rba:RB13094 cobalamin synthesis protein CobW; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SPTR: uncharacterized protein; peptidase M1 membrane alanine aminopeptidase complement(2094483..2096462) Runella slithyformis DSM 19594 10870370 YP_004655396.1 CDS Runsl_1840 NC_015703.1 2096749 2097771 D PFAM: Cobalamin synthesis protein cobW C-terminal domain; CobW/HypB/UreG, nucleotide-binding domain; SPTR: Membrane protein; cobalamin synthesis protein P47K 2096749..2097771 Runella slithyformis DSM 19594 10870371 YP_004655397.1 CDS Runsl_1841 NC_015703.1 2097776 2099089 D InterPro IPR013517; KEGG: sli:Slin_4333 FG-GAP repeat protein; PFAM: FG-GAP; SPTR: FG-GAP repeat protein; hypothetical protein 2097776..2099089 Runella slithyformis DSM 19594 10870372 YP_004655398.1 CDS Runsl_1842 NC_015703.1 2099009 2101363 R PFAM: FG-GAP repeat; COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: ppr:PBPRB1472 hypothetical protein; PFAM: Patatin; SPTR: uncharacterized protein PG1879; hypothetical protein complement(2099009..2101363) Runella slithyformis DSM 19594 10870373 YP_004655399.1 CDS Runsl_1843 NC_015703.1 2101408 2102493 D PFAM: Patatin-like phospholipase; COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834:IPR011951:IPR006439; KEGG: dfe:Dfer_3624 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB; HAD-superfamily hydrolase, subfamily IA, variant 1; patatin 2101408..2102493 Runella slithyformis DSM 19594 10870374 YP_004655400.1 CDS Runsl_1844 NC_015703.1 2102482 2103180 R PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; HAD superfamily (subfamily IA) hydrolase, TIGR02254; COGs: COG3217 Uncharacterized Fe-S protein; InterPro IPR005303:IPR005302; KEGG: dfe:Dfer_3013 MOSC domain containing protein; PFAM: Molybdenum cofactor sulfurase, C-terminal; MOSC, N-terminal beta barrel; SPTR: MOSC domain containing protein; HAD superfamily hydrolase complement(2102482..2103180) Runella slithyformis DSM 19594 10870375 YP_004655401.1 CDS Runsl_1845 NC_015703.1 2103216 2104055 D PFAM: MOSC N-terminal beta barrel domain; MOSC domain; COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR002937:IPR014105; KEGG: mtt:Ftrac_1976 phytoene desaturase; PFAM: Amine oxidase; SPTR: phytoene dehydrogenase; TIGRFAM: Zeta-phytoene desaturase; MOSC domain-containing protein 2103216..2104055 Runella slithyformis DSM 19594 10870376 YP_004655402.1 CDS Runsl_1846 NC_015703.1 2104058 2105560 D PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase; InterPro IPR019861; KEGG: phe:Phep_1531 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; phytoene desaturase 2104058..2105560 Runella slithyformis DSM 19594 10870377 YP_004655403.1 CDS Runsl_1847 NC_015703.1 2105747 2106739 D PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein; COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154:IPR013149; KEGG: dfe:Dfer_3686 alcohol dehydrogenase zinc-binding domain protein; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SPTR: Alcohol dehydrogenase zinc-binding domain protein; hypothetical protein 2105747..2106739 Runella slithyformis DSM 19594 10870378 YP_004655404.1 CDS Runsl_1848 NC_015703.1 2106839 2107852 D PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; COGs: COG0820 Fe-S-cluster redox enzyme; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; InterPro IPR004383:IPR007197; KEGG: dfe:Dfer_4731 radical SAM enzyme, Cfr family; PFAM: Radical SAM; SPTR: Ribosomal RNA large subunit methyltransferase N; TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; NADPH:quinone reductase 2106839..2107852 Runella slithyformis DSM 19594 10870379 YP_004655405.1 CDS Runsl_1849 NC_015703.1 2107929 2108990 D PFAM: Radical SAM superfamily; TIGRFAM: 23S rRNA m2A2503 methyltransferase; ribosomal RNA large subunit methyltransferase N 2107929..2108990 Runella slithyformis DSM 19594 10870380 YP_004655406.1 CDS Runsl_1850 NC_015703.1 2109105 2109752 R InterPro IPR000462; KEGG: mtt:Ftrac_0505 cdp-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-alcohol phosphatidyltransferase; hypothetical protein complement(2109105..2109752) Runella slithyformis DSM 19594 10870381 YP_004655407.1 CDS Runsl_1851 NC_015703.1 2110001 2110768 D PFAM: CDP-alcohol phosphatidyltransferase; SPTR: integron gene cassette protein; CDP-alcohol phosphatidyltransferase 2110001..2110768 Runella slithyformis DSM 19594 10870382 YP_004655408.1 CDS Runsl_1852 NC_015703.1 2110770 2111117 R COGs: COG0338 Site-specific DNA methylase; InterPro IPR012327; KEGG: chl:Chy400_0781 D12 class N6 adenine-specific DNA methyltransferase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; SPTR: D12 class N6 adenine-specific DNA methyltransferase; hypothetical protein complement(2110770..2111117) Runella slithyformis DSM 19594 10870383 YP_004655409.1 CDS Runsl_1853 NC_015703.1 2111770 2112738 D PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: eel:EUBELI_01764 hypothetical protein; SPTR: uncharacterized protein; D12 class N6 adenine-specific DNA methyltransferase 2111770..2112738 Runella slithyformis DSM 19594 10870384 YP_004655410.1 CDS Runsl_1854 NC_015703.1 2112775 2114823 D PFAM: Domain of unknown function DUF87; KEGG: eel:EUBELI_01763 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2112775..2114823 Runella slithyformis DSM 19594 10870385 YP_004655411.1 CDS Runsl_1855 NC_015703.1 2114823 2116202 D KEGG: dfe:Dfer_1363 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2114823..2116202 Runella slithyformis DSM 19594 10870386 YP_004655412.1 CDS Runsl_1856 NC_015703.1 2116278 2117099 D KEGG: dfe:Dfer_1364 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2116278..2117099 Runella slithyformis DSM 19594 10870387 YP_004655413.1 CDS Runsl_1857 NC_015703.1 2117096 2117932 D PFAM: Protein of unknown function (DUF3037); COGs: COG3537 alpha-1 2-mannosidase; InterPro IPR012939:IPR005887; KEGG: dfe:Dfer_4808 alpha-1,2-mannosidase; PFAM: Glycosyl hydrolase 92; SPTR: Alpha-1,2-mannosidase; TIGRFAM: Alpha-1,2-mannosidase; hypothetical protein 2117096..2117932 Runella slithyformis DSM 19594 10870388 YP_004655414.1 CDS Runsl_1858 NC_015703.1 2118040 2120322 R PFAM: Glycosyl hydrolase 92; TIGRFAM: alpha-1,2-mannosidase, KEGG: sli:Slin_1398 hypothetical protein; SPTR: uncharacterized protein; alpha-1,2-mannosidase complement(2118040..2120322) Runella slithyformis DSM 19594 10870389 YP_004655415.1 CDS Runsl_1859 NC_015703.1 2120363 2122738 R COGs: COG1430 conserved hypothetical protein; InterPro IPR003795; KEGG: dfe:Dfer_3905 protein of unknown function DUF192; PFAM: Protein of unknown function DUF192; SPTR: uncharacterized protein; hypothetical protein complement(2120363..2122738) Runella slithyformis DSM 19594 10870390 YP_004655416.1 CDS Runsl_1860 NC_015703.1 2122876 2123415 R PFAM: Uncharacterized ACR, COG1430; COGs: COG0215 Cysteinyl-tRNA synthetase; InterPro IPR015803:IPR015273:IPR002308; KEGG: lby:Lbys_2875 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia, N-terminal; Cysteinyl-tRNA synthetase, class Ia, DALR; PRIAM: Cysteine--tRNA ligase; SPTR: Cysteinyl-tRNA synthetase; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; hypothetical protein complement(2122876..2123415) Runella slithyformis DSM 19594 10870391 YP_004655417.1 CDS Runsl_1861 NC_015703.1 2123469 2125004 R PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase; COGs: COG0572 Uridine kinase; InterPro IPR006083; KEGG: sli:Slin_5127 phosphoribulokinase/uridine kinase; PFAM: Phosphoribulokinase/uridine kinase; PRIAM: Uridine kinase; SPTR: Uridine kinase; cysteinyl-tRNA synthetase complement(2123469..2125004) Runella slithyformis DSM 19594 10870392 YP_004655418.1 CDS Runsl_1862 NC_015703.1 2125211 2125831 D PFAM: Phosphoribulokinase / Uridine kinase; TIGRFAM: uridine kinase; KEGG: sli:Slin_6388 hypothetical protein; SPTR: uncharacterized protein; uridine kinase 2125211..2125831 Runella slithyformis DSM 19594 10870393 YP_004655419.1 CDS Runsl_1863 NC_015703.1 2125850 2126071 R PFAM: PspC domain; COGs: COG1278 Cold shock protein; InterPro IPR011129:IPR002059; KEGG: dfe:Dfer_4008 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding domain protein; hypothetical protein complement(2125850..2126071) Runella slithyformis DSM 19594 10870394 YP_004655420.1 CDS Runsl_1864 NC_015703.1 2126370 2126564 D PFAM: 'Cold-shock' DNA-binding domain; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: sli:Slin_5816 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein; cold-shock DNA-binding domain-containing protein 2126370..2126564 Runella slithyformis DSM 19594 10870395 YP_004655421.1 CDS Runsl_1865 NC_015703.1 2126692 2127882 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; KEGG: dfe:Dfer_4047 hypothetical protein; SPTR: uncharacterized protein; oxidoreductase domain-containing protein complement(2126692..2127882) Runella slithyformis DSM 19594 10870396 YP_004655422.1 CDS Runsl_1866 NC_015703.1 2127991 2128536 D KEGG: dfe:Dfer_4046 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2127991..2128536 Runella slithyformis DSM 19594 10870397 YP_004655423.1 CDS Runsl_1867 NC_015703.1 2128555 2129031 D COGs: COG0714 MoxR-like ATPase; InterPro IPR003593:IPR011703; KEGG: sli:Slin_4963 ATPase AAA; PFAM: ATPase associated with various cellular activities, AAA-3; SMART: ATPase, AAA+ type, core; SPTR: ATPase associated with various cellular activities AAA_3; hypothetical protein 2128555..2129031 Runella slithyformis DSM 19594 10870398 YP_004655424.1 CDS Runsl_1868 NC_015703.1 2129108 2130079 R PFAM: ATPase associated with various cellular activities (AAA); KEGG: sli:Slin_4962 hypothetical protein; SPTR: uncharacterized protein; manually curated; ATPase complement(2129108..2130079) Runella slithyformis DSM 19594 10870399 YP_004655425.1 CDS Runsl_1869 NC_015703.1 2130123 2131313 R KEGG: sli:Slin_4961 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2130123..2131313) Runella slithyformis DSM 19594 10870400 YP_004655426.1 CDS Runsl_1870 NC_015703.1 2131343 2132071 R InterPro IPR003088; KEGG: sli:Slin_3134 cytochrome c, class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c, class I; hypothetical protein complement(2131343..2132071) Runella slithyformis DSM 19594 10870401 YP_004655427.1 CDS Runsl_1871 NC_015703.1 2132210 2132551 R COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: sli:Slin_1058 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; cytochrome c class I complement(2132210..2132551) Runella slithyformis DSM 19594 10870402 YP_004655428.1 CDS Runsl_1872 NC_015703.1 2132654 2133961 R PFAM: Major Facilitator Superfamily; COGs: COG2137 conserved hypothetical protein; HAMAP: Regulatory protein recX; InterPro IPR003783; KEGG: sli:Slin_5048 regulatory protein RecX; PFAM: Regulatory protein RecX; SPTR: Regulatory protein recX; major facilitator superfamily protein complement(2132654..2133961) Runella slithyformis DSM 19594 10870403 YP_004655429.1 CDS Runsl_1873 NC_015703.1 2134079 2134546 D PFAM: RecX family; KEGG: mba:Mbar_A2047 hypothetical protein; SPTR: uncharacterized protein; Regulatory protein recX 2134079..2134546 Runella slithyformis DSM 19594 10870404 YP_004655430.1 CDS Runsl_1874 NC_015703.1 2134558 2135478 D COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: sli:Slin_4513 hypothetical protein; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein; hypothetical protein 2134558..2135478 Runella slithyformis DSM 19594 10870405 YP_004655431.1 CDS Runsl_1875 NC_015703.1 2135560 2135802 D PFAM: Protein of unknown function (DUF433); COGs: COG4634 conserved hypothetical protein; KEGG: sli:Slin_4512 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2135560..2135802 Runella slithyformis DSM 19594 10870406 YP_004655432.1 CDS Runsl_1876 NC_015703.1 2135809 2136171 D PFAM: Protein of unknown function DUF82; COGs: COG0165 Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; InterPro IPR009049:IPR000362; KEGG: sli:Slin_0375 argininosuccinate lyase; PFAM: Fumarate lyase; PRIAM: Argininosuccinate lyase; SPTR: Argininosuccinate lyase; TIGRFAM: Argininosuccinate lyase; hypothetical protein 2135809..2136171 Runella slithyformis DSM 19594 10870407 YP_004655433.1 CDS Runsl_1877 NC_015703.1 2136176 2137510 R PFAM: Lyase; TIGRFAM: argininosuccinate lyase; KEGG: fjo:Fjoh_0943 hypothetical protein; SPTR: uncharacterized protein; argininosuccinate lyase complement(2136176..2137510) Runella slithyformis DSM 19594 10870408 YP_004655434.1 CDS Runsl_1878 NC_015703.1 2137544 2137945 R KEGG: dfe:Dfer_4021 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2137544..2137945) Runella slithyformis DSM 19594 10870409 YP_004655435.1 CDS Runsl_1879 NC_015703.1 2138003 2138587 R hypothetical protein complement(2138003..2138587) Runella slithyformis DSM 19594 10870410 YP_004655436.1 CDS Runsl_1880 NC_015703.1 2138888 2139169 D hypothetical protein 2138888..2139169 Runella slithyformis DSM 19594 10870411 YP_004655437.1 CDS Runsl_1881 NC_015703.1 2139220 2139657 D COGs: COG0308 Aminopeptidase N; KEGG: sli:Slin_5083 aminopeptidase; SPTR: aminopeptidase; hypothetical protein 2139220..2139657 Runella slithyformis DSM 19594 10870412 YP_004655438.1 CDS Runsl_1882 NC_015703.1 2139800 2142190 R PFAM: Peptidase M1; COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; InterPro IPR004680; KEGG: gpb:HDN1F_23920 hypothetical protein; PFAM: Divalent ion symporter; SPTR: uncharacterized protein; aminopeptidase complement(2139800..2142190) Runella slithyformis DSM 19594 10870413 YP_004655439.1 CDS Runsl_1883 NC_015703.1 2142316 2143632 D PFAM: Citrate transporter; KEGG: dfe:Dfer_4871 hypothetical protein; SPTR: uncharacterized protein; citrate transporter 2142316..2143632 Runella slithyformis DSM 19594 10870414 YP_004655440.1 CDS Runsl_1884 NC_015703.1 2143740 2144780 D COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005835:IPR005907; KEGG: sli:Slin_5841 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Glucose-1-phosphate thymidylyltransferase; SPTR: Glucose-1-phosphate thymidylyltransferase; TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; hypothetical protein 2143740..2144780 Runella slithyformis DSM 19594 10870415 YP_004655441.1 CDS Runsl_1885 NC_015703.1 2145113 2145973 D PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form; COGs: COG0307 Riboflavin synthase alpha chain; InterPro IPR001783; KEGG: dfe:Dfer_2926 riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; PRIAM: Riboflavin synthase; SPTR: Riboflavin synthase, alpha subunit; TIGRFAM: Lumazine-binding protein; glucose-1-phosphate thymidylyltransferase 2145113..2145973 Runella slithyformis DSM 19594 10870416 YP_004655442.1 CDS Runsl_1886 NC_015703.1 2146051 2146641 D PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit; KEGG: fjo:Fjoh_1375 hypothetical protein; SPTR: uncharacterized protein; riboflavin synthase subunit alpha 2146051..2146641 Runella slithyformis DSM 19594 10870417 YP_004655443.1 CDS Runsl_1887 NC_015703.1 2146674 2147060 D COGs: COG0366 Glycosidase; InterPro IPR006589:IPR006047; KEGG: sli:Slin_0347 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; SPTR: Alpha amylase catalytic region; hypothetical protein 2146674..2147060 Runella slithyformis DSM 19594 10870418 YP_004655444.1 CDS Runsl_1888 NC_015703.1 2147152 2148618 D PFAM: Alpha amylase, catalytic domain; COGs: COG0621 2-methylthioadenine synthetase; HAMAP: Ribosomal protein S12 methylthiotransferase RimO; InterProIPR005840:IPR006638:IPR013848:IPR007197:IPR 005839; KEGG: dfe:Dfer_3605 MiaB-like tRNA modifying enzyme YliG; PFAM: Methylthiotransferase, N-terminal; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: MiaB-like tRNA modifying enzyme YliG; TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO; Methylthiotransferase; alpha amylase 2147152..2148618 Runella slithyformis DSM 19594 10870419 YP_004655445.1 CDS Runsl_1889 NC_015703.1 2148987 2150294 D PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: ribosomal protein S12 methylthiotransferase RimO; radical SAM methylthiotransferase, MiaB/RimO family; KEGG: dfe:Dfer_4485 oxidoreductase; SPTR: oxidoreductase; 30S ribosomal protein S12 methylthiotransferase 2148987..2150294 Runella slithyformis DSM 19594 10870420 YP_004655446.1 CDS Runsl_1890 NC_015703.1 2150348 2151712 R COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; InterPro IPR006148; KEGG: dfe:Dfer_4486 glucosamine/galactosamine-6-phosphate isomerase; PFAM: Glucosamine/galactosamine-6-phosphate isomerase; PRIAM: Glucosamine-6-phosphate deaminase; SPTR: Glucosamine/galactosamine-6-phosphate isomerase; oxidoreductase complement(2150348..2151712) Runella slithyformis DSM 19594 10870421 YP_004655447.1 CDS Runsl_1891 NC_015703.1 2151765 2152559 R PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; COGs: COG1820 N-acetylglucosamine-6-phosphate deacetylase; InterPro IPR006680:IPR003764; KEGG: dfe:Dfer_4487 N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase 1; PRIAM: N-acetylglucosamine-6-phosphate deacetylase; SPTR: N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; glucosamine-6-phosphate deaminase complement(2151765..2152559) Runella slithyformis DSM 19594 10870422 YP_004655448.1 CDS Runsl_1892 NC_015703.1 2152669 2153844 R PFAM: Amidohydrolase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; COGs: COG0738 Fucose permease; InterPro IPR011701:IPR005964; KEGG: dfe:Dfer_4488 glucose/galactose transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Glucose/galactose transporter; TIGRFAM: Bacterial glucose/galactose transporter; N-acetylglucosamine-6-phosphate deacetylase complement(2152669..2153844) Runella slithyformis DSM 19594 10870423 YP_004655449.1 CDS Runsl_1893 NC_015703.1 2154054 2155376 R PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: dfe:Dfer_4489 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; glucose/galactose transporter complement(2154054..2155376) Runella slithyformis DSM 19594 10870424 YP_004655450.1 CDS Runsl_1894 NC_015703.1 2155528 2156895 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; KEGG: sli:Slin_0601 hypothetical protein; SPTR: uncharacterized protein; oxidoreductase domain-containing protein complement(2155528..2156895) Runella slithyformis DSM 19594 10870425 YP_004655451.1 CDS Runsl_1895 NC_015703.1 2157220 2158512 R KEGG: sli:Slin_0601 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2157220..2158512) Runella slithyformis DSM 19594 10870426 YP_004655452.1 CDS Runsl_1896 NC_015703.1 2158565 2158888 R KEGG: sli:Slin_0602 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2158565..2158888) Runella slithyformis DSM 19594 10870427 YP_004655453.1 CDS Runsl_1897 NC_015703.1 2159251 2160597 R PFAM: Neutral/alkaline non-lysosomal ceramidase; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653:IPR006311; KEGG: sli:Slin_0603 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase; hypothetical protein complement(2159251..2160597) Runella slithyformis DSM 19594 10870428 YP_004655454.1 CDS Runsl_1898 NC_015703.1 2160594 2161985 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: sli:Slin_0604 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; glutamine--scyllo-inositol transaminase complement(2160594..2161985) Runella slithyformis DSM 19594 10870429 YP_004655455.1 CDS Runsl_1899 NC_015703.1 2162082 2163095 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_0608 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; oxidoreductase domain-containing protein complement(2162082..2163095) Runella slithyformis DSM 19594 10870430 YP_004655456.1 CDS Runsl_1900 NC_015703.1 2163174 2163992 D PFAM: short chain dehydrogenase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: sli:Slin_0605 alpha-N-acetylgalactosaminidase; PFAM: Oxidoreductase, N-terminal; PRIAM: Alpha-N-acetylgalactosaminidase; SPTR: Alpha-N-acetylgalactosaminidase; 3-oxoacyl-ACP reductase 2163174..2163992 Runella slithyformis DSM 19594 10870431 YP_004655457.1 CDS Runsl_1901 NC_015703.1 2164005 2165426 D PFAM: Oxidoreductase, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG4760 membrane protein; InterPro IPR010539; KEGG: gym:GYMC10_6220 protein of unknown function DUF1112; PFAM: Protein of unknown function DUF1112; SPTR: uncharacterized protein; alpha-N-acetylgalactosaminidase 2164005..2165426 Runella slithyformis DSM 19594 10870432 YP_004655458.1 CDS Runsl_1902 NC_015703.1 2165552 2166286 D InterPro IPR012910:IPR000531; KEGG: sli:Slin_6039 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein 2165552..2166286 Runella slithyformis DSM 19594 10870433 YP_004655459.1 CDS Runsl_1903 NC_015703.1 2166769 2169870 D PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: sli:Slin_6040 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 2166769..2169870 Runella slithyformis DSM 19594 10870434 YP_004655460.1 CDS Runsl_1904 NC_015703.1 2169982 2171442 D COGs: COG2355 Zn-dependent dipeptidase microsomal dipeptidase homolog; InterPro IPR008257; KEGG: sli:Slin_6456 membrane dipeptidase; PFAM: Peptidase M19, renal dipeptidase; PRIAM: Membrane dipeptidase; SPTR: Membrane dipeptidase; hypothetical protein 2169982..2171442 Runella slithyformis DSM 19594 10870435 YP_004655461.1 CDS Runsl_1905 NC_015703.1 2171563 2172822 D PFAM: Membrane dipeptidase (Peptidase M19); KEGG: dfe:Dfer_4404 hypothetical protein; SPTR: uncharacterized protein; membrane dipeptidase 2171563..2172822 Runella slithyformis DSM 19594 10870436 YP_004655462.1 CDS Runsl_1906 NC_015703.1 2173021 2175435 R KEGG: dfe:Dfer_4403 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2173021..2175435) Runella slithyformis DSM 19594 10870437 YP_004655463.1 CDS Runsl_1907 NC_015703.1 2175447 2176565 R InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_4401 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; hypothetical protein complement(2175447..2176565) Runella slithyformis DSM 19594 10870438 YP_004655464.1 CDS Runsl_1908 NC_015703.1 2176594 2179353 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; KEGG: dfe:Dfer_4400 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor complement(2176594..2179353) Runella slithyformis DSM 19594 10870439 YP_004655465.1 CDS Runsl_1909 NC_015703.1 2179350 2180078 R COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR011659:IPR006680; KEGG: gfo:GFO_0308 WD-40-like repeat-containing amidohydrolase; PFAM: Amidohydrolase 1; WD40-like Beta Propeller; SPTR: WD40-like repeat/amidohydrolase domain protein; hypothetical protein complement(2179350..2180078) Runella slithyformis DSM 19594 10870440 YP_004655466.1 CDS Runsl_1910 NC_015703.1 2180216 2183488 R PFAM: WD40-like Beta Propeller Repeat; Amidohydrolase; COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: mtt:Ftrac_0734 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; amidohydrolase complement(2180216..2183488) Runella slithyformis DSM 19594 10870441 YP_004655467.1 CDS Runsl_1911 NC_015703.1 2183622 2184722 R PFAM: Bacterial regulatory proteins, lacI family; family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_0106 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; LacI family transcriptional regulator complement(2183622..2184722) Runella slithyformis DSM 19594 10870442 YP_004655468.1 CDS Runsl_1912 NC_015703.1 2184902 2187916 D PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: shg:Sph21_2836 RagB/SusD domain-containing protein; PFAM: RagB/SusD; SPTR: outer membrane protein; TonB-dependent receptor plug 2184902..2187916 Runella slithyformis DSM 19594 10870443 YP_004655469.1 CDS Runsl_1913 NC_015703.1 2187941 2189413 D PFAM: SusD family; KEGG: gau:GAU_0690 hypothetical protein; SPTR: uncharacterized protein; RagB/SusD domain-containing protein 2187941..2189413 Runella slithyformis DSM 19594 10870444 YP_004655470.1 CDS Runsl_1914 NC_015703.1 2189488 2191644 D InterPro IPR011459; KEGG: cyn:Cyan7425_0816 hypothetical protein; PFAM: Protein of unknown function DUF1565; SPTR: uncharacterized protein; hypothetical protein 2189488..2191644 Runella slithyformis DSM 19594 10870445 YP_004655471.1 CDS Runsl_1915 NC_015703.1 2191659 2194265 D PFAM: Protein of unknown function (DUF1565); Calx-beta domain; KEGG: mts:MTES_1113 ERCC4-like helicase; SPTR: Predicted protein; hypothetical protein 2191659..2194265 Runella slithyformis DSM 19594 10870446 YP_004655472.1 CDS Runsl_1916 NC_015703.1 2194302 2196419 D COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: phe:Phep_2599 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; hypothetical protein 2194302..2196419 Runella slithyformis DSM 19594 10870447 YP_004655473.1 CDS Runsl_1917 NC_015703.1 2196432 2197187 D PFAM: short chain dehydrogenase; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: phe:Phep_2598 major facilitator superfamily protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; 3-oxoacyl-ACP reductase 2196432..2197187 Runella slithyformis DSM 19594 10870448 YP_004655474.1 CDS Runsl_1918 NC_015703.1 2197191 2198435 D PFAM: Major Facilitator Superfamily; Prodigal; This gene is disrupted by insertion of repetitive element; manually curated; major facilitator superfamily protein 2197191..2198435 Runella slithyformis DSM 19594 10870449 YP_004655475.1 CDS Runsl_1920 NC_015703.1 2200500 2201511 D PFAM: Rhodopirellula transposase; 'Paired box' domain; Prodigal; manually curated; transposase join(2200500..2200964,2200966..2201511) Runella slithyformis DSM 19594 10870451 YP_004655476.1 CDS Runsl_1922 NC_015703.1 2202910 2203635 D PFAM: Metallo-beta-lactamase superfamily; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341:IPR013342; KEGG: phe:Phep_2597 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal; PRIAM: Galactonate dehydratase; SPTR: Mandelate racemase/muconate lactonizing protein; beta-lactamase domain-containing protein 2202910..2203635 Runella slithyformis DSM 19594 10870453 YP_004655477.1 CDS Runsl_1923 NC_015703.1 2203632 2204801 D PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: chu:CHU_0673 lipoprotein transmembrane protein; PFAM: Bile acid:sodium symporter; SPTR: Possible lipoprotein transmembrane protein; galactonate dehydratase 2203632..2204801 Runella slithyformis DSM 19594 10870454 YP_004655478.1 CDS Runsl_1924 NC_015703.1 2205020 2205997 R COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873; KEGG: hch:HCH_04499 long-chain acyl-CoA synthetase-like protein; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: AMP-dependent synthetase and ligase; bile acid:sodium symporter complement(2205020..2205997) Runella slithyformis DSM 19594 10870455 YP_004655479.1 CDS Runsl_1925 NC_015703.1 2206412 2208091 D PFAM: AMP-binding enzyme; Prodigal; manually curated; long-chain-fatty-acid--CoA ligase 2206412..2208091 Runella slithyformis DSM 19594 10870456 YP_004655480.1 CDS Runsl_1927 NC_015703.1 2208657 2210036 D PFAM: Glutamine synthetase, catalytic domain; glutamate--ammonia ligase 2208657..2210036 Runella slithyformis DSM 19594 10870458 YP_004655481.1 CDS Runsl_1928 NC_015703.1 2210154 2210261 R COGs: COG0605 Superoxide dismutase; InterPro IPR019831:IPR019832; KEGG: cpi:Cpin_1061 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; SPTR: Superoxide dismutase; hypothetical protein complement(2210154..2210261) Runella slithyformis DSM 19594 10870459 YP_004655482.1 CDS Runsl_1929 NC_015703.1 2210282 2210956 D PFAM: Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, C-terminal domain; COGs: COG0597 Lipoprotein signal peptidase; HAMAP: Peptidase A8, signal peptidase II; InterPro IPR001872; KEGG: dfe:Dfer_4392 lipoprotein signal peptidase; PRIAM: Signal peptidase II; SPTR: Lipoprotein signal peptidase 2; TIGRFAM: Peptidase A8, signal peptidase II; manganese/iron superoxide dismutase 2210282..2210956 Runella slithyformis DSM 19594 10870460 YP_004655483.1 CDS Runsl_1930 NC_015703.1 2211057 2211890 R PFAM: Signal peptidase (SPase) II; InterPro IPR002872; KEGG: dfe:Dfer_4393 proline dehydrogenase; PFAM: Proline dehydrogenase; SPTR: Proline dehydrogenase; lipoprotein signal peptidase complement(2211057..2211890) Runella slithyformis DSM 19594 10870461 YP_004655484.1 CDS Runsl_1931 NC_015703.1 2211901 2213109 R PFAM: Proline dehydrogenase; COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006218:IPR020822; KEGG: dfe:Dfer_4394 DAHP synthetase I/KdsA; PFAM: DAHP synthetase I/KDSA; Chorismate mutase, type II; PRIAM: 3-deoxy-7-phosphoheptulonate synthase; SPTR: DAHP synthetase I/KDSA; proline dehydrogenase complement(2211901..2213109) Runella slithyformis DSM 19594 10870462 YP_004655485.1 CDS Runsl_1932 NC_015703.1 2213235 2214332 D PFAM: Chorismate mutase type II; DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001867; KEGG: sli:Slin_2355 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, C-terminal; SPTR: two component transcriptional regulator, winged helix family; 3-deoxy-7-phosphoheptulonate synthase 2213235..2214332 Runella slithyformis DSM 19594 10870463 YP_004655486.1 CDS Runsl_1933 NC_015703.1 2214526 2215446 R PFAM: Transcriptional regulatory protein, C terminal; InterPro IPR007372; KEGG: cat:CA2559_06410 YCE I like family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YCE I like family protein; manually curated; winged helix family transcriptional regulator complement(2214526..2215446) Runella slithyformis DSM 19594 10870464 YP_004655487.1 CDS Runsl_1934 NC_015703.1 2215516 2216154 R PFAM: YceI-like domain; Prodigal; hypothetical protein complement(2215516..2216154) Runella slithyformis DSM 19594 10870465 YP_004655488.1 CDS Runsl_1936 NC_015703.1 2217030 2217497 R InterPro IPR003838; KEGG: sli:Slin_0943 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein complement(2217030..2217497) Runella slithyformis DSM 19594 10870467 YP_004655489.1 CDS Runsl_1937 NC_015703.1 2217606 2220017 R PFAM: Predicted permease; InterPro IPR002350:IPR011497; KEGG: scl:sce6861 hypothetical protein; PFAM: Protease inhibitor, Kazal-type; SMART: Proteinase inhibitor I1, Kazal; SPTR: uncharacterized protein; hypothetical protein complement(2217606..2220017) Runella slithyformis DSM 19594 10870468 YP_004655490.1 CDS Runsl_1938 NC_015703.1 2220132 2220350 R PFAM: Kazal-type serine protease inhibitor domain; KEGG: dfe:Dfer_4869 hypothetical protein; SPTR: uncharacterized protein; protease inhibitor Kazal-type complement(2220132..2220350) Runella slithyformis DSM 19594 10870469 YP_004655491.1 CDS Runsl_1939 NC_015703.1 2220387 2220752 R COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: sli:Slin_3314 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein complement(2220387..2220752) Runella slithyformis DSM 19594 10870470 YP_004655492.1 CDS Runsl_1940 NC_015703.1 2220950 2223364 R PFAM: Predicted permease; KEGG: sli:Slin_4640 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2220950..2223364) Runella slithyformis DSM 19594 10870471 YP_004655493.1 CDS Runsl_1941 NC_015703.1 2223648 2223944 R KEGG: sli:Slin_4640 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2223648..2223944) Runella slithyformis DSM 19594 10870472 YP_004655494.1 CDS Runsl_1942 NC_015703.1 2223949 2224251 R InterPro IPR003838; KEGG: sli:Slin_4639 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein complement(2223949..2224251) Runella slithyformis DSM 19594 10870473 YP_004655495.1 CDS Runsl_1943 NC_015703.1 2224452 2227022 R PFAM: Predicted permease; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011658:IPR006665; KEGG: sli:Slin_4643 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; PA14; SMART: PA14; SPTR: OmpA/MotB domain protein; hypothetical protein complement(2224452..2227022) Runella slithyformis DSM 19594 10870474 YP_004655496.1 CDS Runsl_1944 NC_015703.1 2226973 2228004 R PFAM: OmpA family; PA14 domain; manually curated; OmpA/MotB domain-containing protein complement(2226973..2228004) Runella slithyformis DSM 19594 10870475 YP_004655497.1 CDS Runsl_1946 NC_015703.1 2228493 2230928 R PFAM: Predicted permease; TIGRFAM: Acidobacterial duplicated orphan permease; InterPro IPR003838; KEGG: sli:Slin_4627 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein complement(2228493..2230928) Runella slithyformis DSM 19594 10870477 YP_004655498.1 CDS Runsl_1947 NC_015703.1 2231094 2233484 R PFAM: Predicted permease; InterPro IPR003838; KEGG: sli:Slin_4615 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein complement(2231094..2233484) Runella slithyformis DSM 19594 10870478 YP_004655499.1 CDS Runsl_1948 NC_015703.1 2233583 2236009 R PFAM: Predicted permease; TIGRFAM: Acidobacterial duplicated orphan permease; InterPro IPR003838; KEGG: sli:Slin_4630 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein complement(2233583..2236009) Runella slithyformis DSM 19594 10870479 YP_004655500.1 CDS Runsl_1949 NC_015703.1 2236090 2238516 R PFAM: Predicted permease; InterPro IPR003838; KEGG: dfe:Dfer_4857 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein complement(2236090..2238516) Runella slithyformis DSM 19594 10870480 YP_004655501.1 CDS Runsl_1950 NC_015703.1 2239059 2241506 R PFAM: Predicted permease; TIGRFAM: Acidobacterial duplicated orphan permease; InterPro IPR003838; KEGG: zpr:ZPR_4640 ABC transporter permease; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: ABC transporter permease; hypothetical protein complement(2239059..2241506) Runella slithyformis DSM 19594 10870481 YP_004655502.1 CDS Runsl_1951 NC_015703.1 2241646 2244114 R PFAM: Predicted permease; InterPro IPR003838; KEGG: sli:Slin_4595 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein complement(2241646..2244114) Runella slithyformis DSM 19594 10870482 YP_004655503.1 CDS Runsl_1952 NC_015703.1 2244293 2246701 R PFAM: Predicted permease; hypothetical protein complement(2244293..2246701) Runella slithyformis DSM 19594 10870483 YP_004655504.1 CDS Runsl_1953 NC_015703.1 2247109 2247927 D COGs: COG0339 Zn-dependent oligopeptidase; InterPro IPR001567; KEGG: sli:Slin_0934 peptidyl-dipeptidase DCP; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; PRIAM: Peptidyl-dipeptidase Dcp; SPTR: Peptidyl-dipeptidase Dcp; hypothetical protein 2247109..2247927 Runella slithyformis DSM 19594 10870484 YP_004655505.1 CDS Runsl_1954 NC_015703.1 2248076 2250193 D PFAM: Peptidase M3; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1282 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; peptidyl-dipeptidase Dcp 2248076..2250193 Runella slithyformis DSM 19594 10870485 YP_004655506.1 CDS Runsl_1955 NC_015703.1 2250478 2253045 D KEGG: dfe:Dfer_1283 conserved hypothetical signal peptide protein; SPTR: Conserved hypothetical signal peptide protein; TonB-dependent receptor 2250478..2253045 Runella slithyformis DSM 19594 10870486 YP_004655507.1 CDS Runsl_1956 NC_015703.1 2253241 2253954 D KEGG: dfe:Dfer_4852 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2253241..2253954 Runella slithyformis DSM 19594 10870487 YP_004655508.1 CDS Runsl_1957 NC_015703.1 2254104 2254490 R KEGG: sli:Slin_6580 hypothetical protein; SPTR: Membrane protein; hypothetical protein complement(2254104..2254490) Runella slithyformis DSM 19594 10870488 YP_004655509.1 CDS Runsl_1958 NC_015703.1 2254883 2256127 D hypothetical protein 2254883..2256127 Runella slithyformis DSM 19594 10870489 YP_004655510.1 CDS Runsl_1959 NC_015703.1 2256355 2256771 D InterPro IPR013216; KEGG: kfl:Kfla_1937 type 11 methyltransferase; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; hypothetical protein 2256355..2256771 Runella slithyformis DSM 19594 10870490 YP_004655511.1 CDS Runsl_1960 NC_015703.1 2256943 2257557 R PFAM: Methyltransferase domain; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: sli:Slin_0931 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; type 11 methyltransferase complement(2256943..2257557) Runella slithyformis DSM 19594 10870491 YP_004655512.1 CDS Runsl_1961 NC_015703.1 2257669 2260287 R PFAM: Predicted permease; InterPro IPR005149; KEGG: sli:Slin_0945 PadR family transcriptional regulator; PFAM: Transcriptional regulator PadR N-terminal-like; SPTR: Transcriptional regulator, PadR-like family; hypothetical protein complement(2257669..2260287) Runella slithyformis DSM 19594 10870492 YP_004655513.1 CDS Runsl_1962 NC_015703.1 2260344 2260676 R PFAM: Transcriptional regulator PadR-like family; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: shg:Sph21_3946 xylose isomerase domain-containing protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; PadR family transcriptional regulator complement(2260344..2260676) Runella slithyformis DSM 19594 10870493 YP_004655514.1 CDS Runsl_1963 NC_015703.1 2260945 2261793 D PFAM: Xylose isomerase-like TIM barrel; manually curated; xylose isomerase domain-containing protein 2260945..2261793 Runella slithyformis DSM 19594 10870494 YP_004655515.1 CDS Runsl_1965 NC_015703.1 2262193 2262975 R InterPro IPR003838; KEGG: sli:Slin_0948 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein complement(2262193..2262975) Runella slithyformis DSM 19594 10870496 YP_004655516.1 CDS Runsl_1966 NC_015703.1 2263118 2265523 R PFAM: Predicted permease; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: dfe:Dfer_2089 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein complement(2263118..2265523) Runella slithyformis DSM 19594 10870497 YP_004655517.1 CDS Runsl_1967 NC_015703.1 2265656 2268040 R PFAM: Predicted permease; InterPro IPR003838; KEGG: sli:Slin_0927 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein complement(2265656..2268040) Runella slithyformis DSM 19594 10870498 YP_004655518.1 CDS Runsl_1968 NC_015703.1 2268139 2270541 R PFAM: Predicted permease; COGs: COG3727 DNA G:T-mismatch repair endonuclease; InterPro IPR004603; KEGG: cpi:Cpin_2561 DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; SPTR: DNA mismatch endonuclease Vsr; TIGRFAM: DNA mismatch endonuclease vsr; hypothetical protein complement(2268139..2270541) Runella slithyformis DSM 19594 10870499 YP_004655519.1 CDS Runsl_1969 NC_015703.1 2270958 2271392 D PFAM: DNA mismatch endonuclease Vsr; TIGRFAM: DNA mismatch endonuclease Vsr; InterPro IPR003838; KEGG: dfe:Dfer_4843 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; DNA mismatch endonuclease Vsr 2270958..2271392 Runella slithyformis DSM 19594 10870500 YP_004655520.1 CDS Runsl_1970 NC_015703.1 2271407 2273764 R PFAM: Predicted permease; hypothetical protein complement(2271407..2273764) Runella slithyformis DSM 19594 10870501 YP_004655521.1 CDS Runsl_1971 NC_015703.1 2273771 2273932 D COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: sli:Slin_4589 ABC transporter; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; hypothetical protein 2273771..2273932 Runella slithyformis DSM 19594 10870502 YP_004655522.1 CDS Runsl_1972 NC_015703.1 2273852 2274529 R PFAM: ABC transporter; InterPro IPR008815; KEGG: paa:Paes_1770 hypothetical protein; PFAM: 23S rRNA-associated protein; SPTR: S23 ribosomal protein; phosphonate-transporting ATPase complement(2273852..2274529) Runella slithyformis DSM 19594 10870503 YP_004655523.1 CDS Runsl_1973 NC_015703.1 2274659 2274979 D PFAM: S23 ribosomal protein; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_4837 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; S23 ribosomal protein 2274659..2274979 Runella slithyformis DSM 19594 10870504 YP_004655524.1 CDS Runsl_1974 NC_015703.1 2275042 2276349 R PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; RND family efflux transporter MFP subunit complement(2275042..2276349) Runella slithyformis DSM 19594 10870505 YP_004655525.1 CDS Runsl_1975 NC_015703.1 2276607 2276735 D COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR003593:IPR002078:IPR002197; KEGG: dfe:Dfer_4836 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family; hypothetical protein 2276607..2276735 Runella slithyformis DSM 19594 10870506 YP_004655526.1 CDS Runsl_1976 NC_015703.1 2276714 2278084 D PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterPro IPR003594; KEGG: dfe:Dfer_4824 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: PAS/PAC sensor signal transduction histidine kinase; Fis family transcriptional regulator 2276714..2278084 Runella slithyformis DSM 19594 10870507 YP_004655527.1 CDS Runsl_1977 NC_015703.1 2278081 2279409 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG3502 conserved hypothetical protein; InterPro IPR009297; KEGG: sli:Slin_5199 hypothetical protein; PFAM: Protein of unknown function DUF952; SPTR: uncharacterized protein; integral membrane sensor signal transduction histidine kinase 2278081..2279409 Runella slithyformis DSM 19594 10870508 YP_004655528.1 CDS Runsl_1978 NC_015703.1 2279427 2279741 R PFAM: Protein of unknown function (DUF952); COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance; InterPro IPR005496; KEGG: sli:Slin_5754 integral membrane protein TerC; PFAM: Integral membrane protein TerC; SPTR: Integral membrane protein TerC; TIGRFAM: integral membrane protein, TerC family; hypothetical protein complement(2279427..2279741) Runella slithyformis DSM 19594 10870509 YP_004655529.1 CDS Runsl_1979 NC_015703.1 2279738 2280814 R PFAM: Integral membrane protein TerC family; TIGRFAM: integral membrane protein, TerC family; KEGG: ppn:Palpr_0914 hypothetical protein; SPTR: uncharacterized protein; TerC family integral membrane protein complement(2279738..2280814) Runella slithyformis DSM 19594 10870510 YP_004655530.1 CDS Runsl_1980 NC_015703.1 2280911 2281438 R COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dfe:Dfer_3250 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; hypothetical protein complement(2280911..2281438) Runella slithyformis DSM 19594 10870511 YP_004655531.1 CDS Runsl_1981 NC_015703.1 2281479 2282195 R PFAM: Ndr family; COGs: COG1219 ATP-dependent protease Clp ATPase subunit; HAMAP: Clp protease, ATP-binding subunit ClpX; InterProIPR004487:IPR003593:IPR010603:IPR013093:IPR 019489; KEGG: dfe:Dfer_4573 sigma 54 interacting domain protein; PFAM: ATPase associated with various cellular activities, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: Sigma 54 interacting domain protein; TIGRFAM: Clp protease, ATP-binding subunit ClpX; alpha/beta hydrolase complement(2281479..2282195) Runella slithyformis DSM 19594 10870512 YP_004655532.1 CDS Runsl_1982 NC_015703.1 2282284 2283522 R PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX); KEGG: dps:DP2713 hypothetical protein; SPTR: uncharacterized protein; sigma 54 interacting domain-containing protein complement(2282284..2283522) Runella slithyformis DSM 19594 10870513 YP_004655533.1 CDS Runsl_1983 NC_015703.1 2283835 2284530 D COGs: COG1566 Multidrug resistance efflux pump; KEGG: sli:Slin_0782 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2283835..2284530 Runella slithyformis DSM 19594 10870514 YP_004655534.1 CDS Runsl_1984 NC_015703.1 2284543 2285829 R COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR003593:IPR005074:IPR001140:IPR003439; KEGG: phe:Phep_0558 ABC transporter-like protein; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; hypothetical protein complement(2284543..2285829) Runella slithyformis DSM 19594 10870515 YP_004655535.1 CDS Runsl_1985 NC_015703.1 2285832 2288132 R PFAM: ABC transporter transmembrane region; ABC transporter; Peptidase C39 family; KEGG: pmo:Pmob_0677 hypothetical protein; SPTR: uncharacterized protein; xenobiotic-transporting ATPase complement(2285832..2288132) Runella slithyformis DSM 19594 10870516 YP_004655536.1 CDS Runsl_1986 NC_015703.1 2288129 2288740 R TIGRFAM: radical SAM additional 4Fe4S-binding domain; SPTR: uncharacterized protein; hypothetical protein complement(2288129..2288740) Runella slithyformis DSM 19594 10870517 YP_004655537.1 CDS Runsl_1987 NC_015703.1 2289076 2289462 R Prodigal; manually curated; hypothetical protein complement(2289076..2289462) Runella slithyformis DSM 19594 10870518 YP_004655538.1 CDS Runsl_1989 NC_015703.1 2290591 2290860 R hypothetical protein complement(2290591..2290860) Runella slithyformis DSM 19594 10870520 YP_004655539.1 CDS Runsl_1990 NC_015703.1 2290998 2291471 R hypothetical protein complement(2290998..2291471) Runella slithyformis DSM 19594 10870521 YP_004655540.1 CDS Runsl_1991 NC_015703.1 2291555 2291755 R hypothetical protein complement(2291555..2291755) Runella slithyformis DSM 19594 10870522 YP_004655541.1 CDS Runsl_1992 NC_015703.1 2291787 2291879 D InterPro IPR001387; KEGG: sli:Slin_1627 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; hypothetical protein 2291787..2291879 Runella slithyformis DSM 19594 10870523 YP_004655542.1 CDS Runsl_1993 NC_015703.1 2292137 2292604 D PFAM: Helix-turn-helix; COGs: COG0605 Superoxide dismutase; InterPro IPR019831:IPR019832; KEGG: dfe:Dfer_4203 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; PRIAM: Superoxide dismutase; SPTR: Superoxide dismutase; helix-turn-helix domain-containing protein 2292137..2292604 Runella slithyformis DSM 19594 10870524 YP_004655543.1 CDS Runsl_1994 NC_015703.1 2292801 2293403 R PFAM: Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, C-terminal domain; COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125; KEGG: sli:Slin_5394 CMP/dCMP deaminase zinc-binding protein; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: CMP/dCMP deaminase zinc-binding protein; Superoxide dismutase complement(2292801..2293403) Runella slithyformis DSM 19594 10870525 YP_004655544.1 CDS Runsl_1995 NC_015703.1 2293460 2293924 R PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro IPR006163; KEGG: sli:Slin_4413 phosphopantetheine-binding protein; PFAM: Phosphopantetheine-binding; SPTR: Phosphopantetheine-binding protein; CMP/dCMP deaminase zinc-binding protein complement(2293460..2293924) Runella slithyformis DSM 19594 10870526 YP_004655545.1 CDS Runsl_1996 NC_015703.1 2294223 2294462 R PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein; phosphopantetheine-binding protein complement(2294223..2294462) Runella slithyformis DSM 19594 10870527 YP_004655546.1 CDS Runsl_1997 NC_015703.1 2294467 2294595 D COGs: COG0296 1 4-alpha-glucan branching enzyme; HAMAP: 1,4-alpha-glucan branching enzyme, core region; InterProIPR006407:IPR006589:IPR004193:IPR006047:IPR 006048; KEGG: dfe:Dfer_1955 1,4-alpha-glucan branching enzyme; PFAM: Alpha-amylase, C-terminal all beta; Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic region; PRIAM: 1,4-alpha-glucan branching enzyme; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; SPTR: 1,4-alpha-glucan-branching enzyme 2; TIGRFAM: 1,4-alpha-glucan branching enzyme, core region; hypothetical protein 2294467..2294595 Runella slithyformis DSM 19594 10870528 YP_004655547.1 CDS Runsl_1998 NC_015703.1 2294650 2296677 R PFAM: Alpha amylase, C-terminal all-beta domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain; TIGRFAM: alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase; COGs: COG3201 Nicotinamide mononucleotide transporter; InterPro IPR006419; KEGG: sli:Slin_5815 nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; SPTR: Nicotinamide mononucleotide transporter PnuC; TIGRFAM: Nicotinamide mononucleotide transporter PnuC; 1,4-alpha-glucan-branching protein complement(2294650..2296677) Runella slithyformis DSM 19594 10870529 YP_004655548.1 CDS Runsl_1999 NC_015703.1 2296802 2297476 D PFAM: Nicotinamide mononucleotide transporter; TIGRFAM: nicotinamide mononucleotide transporter PnuC; manually curated; nicotinamide mononucleotide transporter PnuC 2296802..2297476 Runella slithyformis DSM 19594 10870530 YP_004655549.1 CDS Runsl_2001 NC_015703.1 2297695 2298846 R PFAM: Peptidase M28; peptidase M28 complement(2297695..2298846) Runella slithyformis DSM 19594 10870532 YP_004655550.1 CDS Runsl_2002 NC_015703.1 2298861 2299607 R KEGG: dfe:Dfer_3253 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2298861..2299607) Runella slithyformis DSM 19594 10870533 YP_004655551.1 CDS Runsl_2003 NC_015703.1 2299751 2300164 R COGs: COG0611 Thiamine monophosphate kinase; InterPro IPR000728:IPR006283; KEGG: dfe:Dfer_3561 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; PRIAM: Thiamine-phosphate kinase; SPTR: Thiamine-monophosphate kinase; TIGRFAM: Thiamine-monophosphate kinase; hypothetical protein complement(2299751..2300164) Runella slithyformis DSM 19594 10870534 YP_004655552.1 CDS Runsl_2004 NC_015703.1 2300211 2301251 R PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: thiamine-monophosphate kinase; COGs: COG0225 Peptide methionine sulfoxide reductase; HAMAP: Peptide methionine sulphoxide reductase MsrA; InterPro IPR002569; KEGG: dfe:Dfer_3755 peptide methionine sulfoxide reductase; PFAM: Peptide methionine sulphoxide reductase MsrA; PRIAM: Peptide-methionine (S)-S-oxide reductase; SPTR: Peptide methionine sulfoxide reductase MsrA; TIGRFAM: Peptide methionine sulphoxide reductase MsrA; thiamine-monophosphate kinase complement(2300211..2301251) Runella slithyformis DSM 19594 10870535 YP_004655553.1 CDS Runsl_2005 NC_015703.1 2301445 2302098 D PFAM: Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase; peptide methionine sulfoxide reductase 2301445..2302098 Runella slithyformis DSM 19594 10870536 YP_004655554.1 CDS Runsl_2006 NC_015703.1 2302307 2302576 D KEGG: sro:Sros_3830 spheroidene monooxygenase; SPTR: Spheroidene monooxygenase; hypothetical protein 2302307..2302576 Runella slithyformis DSM 19594 10870537 YP_004655555.1 CDS Runsl_2007 NC_015703.1 2302594 2303334 R PFAM: Domain of unknown function (DUF3291); COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_4898 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; hypothetical protein complement(2302594..2303334) Runella slithyformis DSM 19594 10870538 YP_004655556.1 CDS Runsl_2008 NC_015703.1 2303569 2304234 D PFAM: ABC transporter; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_4897 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; phosphonate-transporting ATPase 2303569..2304234 Runella slithyformis DSM 19594 10870539 YP_004655557.1 CDS Runsl_2009 NC_015703.1 2304264 2305589 D PFAM: Outer membrane efflux protein; COGs: COG0682 Prolipoprotein diacylglyceryltransferase; HAMAP: Prolipoprotein diacylglyceryl transferase; InterPro IPR001640; KEGG: sli:Slin_1084 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; SPTR: Prolipoprotein diacylglyceryl transferase; TIGRFAM: Prolipoprotein diacylglyceryl transferase; outer membrane efflux protein 2304264..2305589 Runella slithyformis DSM 19594 10870540 YP_004655558.1 CDS Runsl_2010 NC_015703.1 2305761 2306624 D PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; KEGG: dfe:Dfer_4315 hypothetical protein; SPTR: uncharacterized protein; prolipoprotein diacylglyceryl transferase 2305761..2306624 Runella slithyformis DSM 19594 10870541 YP_004655559.1 CDS Runsl_2011 NC_015703.1 2306739 2307341 D COGs: COG3844 Kynureninase; InterPro IPR000192:IPR010111; KEGG: sli:Slin_1518 kynureninase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Kynureninase; SPTR: Kynureninase; TIGRFAM: Kynureninase; hypothetical protein 2306739..2307341 Runella slithyformis DSM 19594 10870542 YP_004655560.1 CDS Runsl_2012 NC_015703.1 2307511 2308809 R PFAM: Aminotransferase class-V; TIGRFAM: kynureninase; InterPro IPR013766; KEGG: dfe:Dfer_3953 thioredoxin domain; PFAM: Thioredoxin domain; SPTR: Thioredoxin domain; kynureninase complement(2307511..2308809) Runella slithyformis DSM 19594 10870543 YP_004655561.1 CDS Runsl_2013 NC_015703.1 2308894 2309340 R PFAM: Thioredoxin; KEGG: dfe:Dfer_1099 hypothetical protein; SPTR: uncharacterized protein; thioredoxin complement(2308894..2309340) Runella slithyformis DSM 19594 10870544 YP_004655562.1 CDS Runsl_2014 NC_015703.1 2309423 2311159 R PFAM: PA14 domain; Domain of Unknown Function (DUF1080); KEGG: sli:Slin_4115 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2309423..2311159) Runella slithyformis DSM 19594 10870545 YP_004655563.1 CDS Runsl_2015 NC_015703.1 2311218 2315645 R COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764:IPR001466; KEGG: sli:Slin_5392 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 3, N-terminal; Beta-lactamase-related; PRIAM: Beta-N-acetylhexosaminidase., Beta-lactamase; SPTR: Beta-N-acetylhexosaminidase; hypothetical protein complement(2311218..2315645) Runella slithyformis DSM 19594 10870546 YP_004655564.1 CDS Runsl_2016 NC_015703.1 2315728 2318694 R PFAM: Glycosyl hydrolase 3 N terminal domain; Beta-lactamase; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_4228 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; beta-N-acetylhexosaminidase., beta-lactamase complement(2315728..2318694) Runella slithyformis DSM 19594 10870547 YP_004655565.1 CDS Runsl_2017 NC_015703.1 2318986 2321781 D PFAM: TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent receptor; KEGG: sli:Slin_5438 cell surface receptor IPT/TIG domain protein; SPTR: uncharacterized protein; TonB-dependent receptor 2318986..2321781 Runella slithyformis DSM 19594 10870548 YP_004655566.1 CDS Runsl_2018 NC_015703.1 2321883 2323634 D cell surface receptor IPT/TIG domain-containing protein 2321883..2323634 Runella slithyformis DSM 19594 10870549 YP_004655567.1 CDS Runsl_2019 NC_015703.1 2323677 2324255 D KEGG: dfe:Dfer_3320 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2323677..2324255 Runella slithyformis DSM 19594 10870550 YP_004655568.1 CDS Runsl_2020 NC_015703.1 2324383 2325462 D PFAM: Protein of unknown function (DUF3500); InterPro IPR006626; KEGG: sli:Slin_3272 hypothetical protein; SPTR: Parallel beta-helix repeat protein; TIGRFAM: parallel beta-helix repeat-containing protein; hypothetical protein 2324383..2325462 Runella slithyformis DSM 19594 10870551 YP_004655569.1 CDS Runsl_2021 NC_015703.1 2325464 2326669 R TIGRFAM: parallel beta-helix repeat-containing protein; COGs: COG0054 Riboflavin synthase beta-chain; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; InterPro IPR002180; KEGG: dfe:Dfer_3816 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; SPTR: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; parallel beta-helix repeat-containing protein complement(2325464..2326669) Runella slithyformis DSM 19594 10870552 YP_004655570.1 CDS Runsl_2022 NC_015703.1 2326791 2327270 D PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; COGs: COG0118 Glutamine amidotransferase; InterPro IPR000991:IPR010139; KEGG: sli:Slin_5533 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: Glutamine amidotransferase class-I, C-terminal; SPTR: Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; 6,7-dimethyl-8-ribityllumazine synthase 2326791..2327270 Runella slithyformis DSM 19594 10870553 YP_004655571.1 CDS Runsl_2023 NC_015703.1 2327267 2327854 D PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; KEGG: shg:Sph21_3595 protein of unknown function DUF2490; SPTR: uncharacterized protein; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 2327267..2327854 Runella slithyformis DSM 19594 10870554 YP_004655572.1 CDS Runsl_2024 NC_015703.1 2327885 2328619 D PFAM: Protein of unknown function (DUF2490); COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: rbi:RB2501_07250 rhodanese-like domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Thiosulfate sulfurtransferase GlpE; hypothetical protein 2327885..2328619 Runella slithyformis DSM 19594 10870555 YP_004655573.1 CDS Runsl_2025 NC_015703.1 2328619 2329116 D PFAM: Rhodanese-like domain; InterPro IPR008854; KEGG: wvi:Weevi_1737 thiopurine S-methyltransferase; PFAM: Thiopurine S-methyltransferase; SPTR: Thiopurine S-methyltransferase; rhodanese-like protein 2328619..2329116 Runella slithyformis DSM 19594 10870556 YP_004655574.1 CDS Runsl_2026 NC_015703.1 2329253 2329840 D PFAM: Thiopurine S-methyltransferase (TPMT); thiopurine S-methyltransferase 2329253..2329840 Runella slithyformis DSM 19594 10870557 YP_004655575.1 CDS Runsl_2027 NC_015703.1 2329974 2330234 R COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR006680:IPR013108; KEGG: dfe:Dfer_3692 dihydroorotase; PFAM: Amidohydrolase 1; Amidohydrolase 3; PRIAM: Allantoinase; SPTR: Allantoinase; hypothetical protein complement(2329974..2330234) Runella slithyformis DSM 19594 10870558 YP_004655576.1 CDS Runsl_2028 NC_015703.1 2330589 2331956 R PFAM: Amidohydrolase; TIGRFAM: dihydroorotase, multifunctional complex type; allantoinase complement(2330589..2331956) Runella slithyformis DSM 19594 10870559 YP_004655577.1 CDS Runsl_2029 NC_015703.1 2332073 2332306 D COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154:IPR013149; KEGG: sli:Slin_5937 alcohol dehydrogenase zinc-binding domain protein; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; PRIAM: Trans-2-enoyl-CoA reductase (NADPH); SPTR: Alcohol dehydrogenase zinc-binding domain protein; hypothetical protein 2332073..2332306 Runella slithyformis DSM 19594 10870560 YP_004655578.1 CDS Runsl_2030 NC_015703.1 2332643 2333614 R PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: sli:Slin_5448 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; trans-2-enoyl-CoA reductase (NADPH) complement(2332643..2333614) Runella slithyformis DSM 19594 10870561 YP_004655579.1 CDS Runsl_2031 NC_015703.1 2333712 2334461 D PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; KEGG: sli:Slin_6031 hypothetical protein; SPTR: uncharacterized protein; phospholipid/glycerol acyltransferase 2333712..2334461 Runella slithyformis DSM 19594 10870562 YP_004655580.1 CDS Runsl_2032 NC_015703.1 2334494 2334733 R COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_6032 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein complement(2334494..2334733) Runella slithyformis DSM 19594 10870563 YP_004655581.1 CDS Runsl_2033 NC_015703.1 2334708 2335307 R PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; HAMAP:1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; InterPro IPR006062:IPR006063; KEGG: dfe:Dfer_4238 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: Histidine biosynthesis; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR:1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; ECF subfamily RNA polymerase sigma-24 subunit complement(2334708..2335307) Runella slithyformis DSM 19594 10870564 YP_004655582.1 CDS Runsl_2034 NC_015703.1 2335608 2336333 R PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro IPR019734:IPR001440; KEGG: mac:MA3293 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: uncharacterized protein; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase complement(2335608..2336333) Runella slithyformis DSM 19594 10870565 YP_004655583.1 CDS Runsl_2035 NC_015703.1 2336367 2339495 R PFAM: Tetratricopeptide repeat; hypothetical protein complement(2336367..2339495) Runella slithyformis DSM 19594 10870566 YP_004655584.1 CDS Runsl_2036 NC_015703.1 2339692 2340129 D hypothetical protein 2339692..2340129 Runella slithyformis DSM 19594 10870567 YP_004655585.1 CDS Runsl_2037 NC_015703.1 2340190 2341290 D InterPro IPR016047; PFAM: Peptidase M23; SPTR: enzyme with aminotransferase class-III domain protein; hypothetical protein 2340190..2341290 Runella slithyformis DSM 19594 10870568 YP_004655586.1 CDS Runsl_2038 NC_015703.1 2341586 2342299 D PFAM: Peptidase M23; peptidase M23 2341586..2342299 Runella slithyformis DSM 19594 10870569 YP_004655587.1 CDS Runsl_2039 NC_015703.1 2342358 2343008 D COGs: COG2173 D-alanyl-D-alanine dipeptidase; InterPro IPR000755; KEGG: dsh:Dshi_3149 D-alanyl-D-alanine dipeptidase; PFAM: Peptidase M15D, vanX D-ala-D-ala dipeptidase; SPTR: D-alanyl-d-alanine dipeptidase; hypothetical protein 2342358..2343008 Runella slithyformis DSM 19594 10870570 YP_004655588.1 CDS Runsl_2040 NC_015703.1 2343027 2343875 D PFAM: D-ala-D-ala dipeptidase; COGs: COG1193 Mismatch repair ATPase (MutS family); HAMAP: MutS2 protein; InterPro IPR007696:IPR000432:IPR002625:IPR005747; KEGG: dfe:Dfer_5060 MutS2 family protein; PFAM: Smr protein/MutS2 C-terminal; DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; Smr protein/MutS2 C-terminal; SPTR: MutS2 family protein; TIGRFAM: DNA mismatch repair protein MutS, type 2; peptidase M15D vanX D-ala-D-ala dipeptidase 2343027..2343875 Runella slithyformis DSM 19594 10870571 YP_004655589.1 CDS Runsl_2041 NC_015703.1 2344051 2346462 D PFAM: MutS domain V; Smr domain; TIGRFAM: MutS2 family protein; COGs: COG5505 integral membrane protein; InterPro IPR008537; KEGG: sli:Slin_1701 hypothetical protein; PFAM: Protein of unknown function DUF819; SPTR: uncharacterized protein; MutS2 protein 2344051..2346462 Runella slithyformis DSM 19594 10870572 YP_004655590.1 CDS Runsl_2042 NC_015703.1 2346508 2347686 D PFAM: Protein of unknown function (DUF819); COGs: COG0796 Glutamate racemase; HAMAP: Glutamate racemase; InterPro IPR004391:IPR015942; KEGG: sli:Slin_2377 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; PRIAM: Glutamate racemase; SPTR: Glutamate racemase; TIGRFAM: Glutamate racemase; hypothetical protein 2346508..2347686 Runella slithyformis DSM 19594 10870573 YP_004655591.1 CDS Runsl_2043 NC_015703.1 2347706 2348530 D PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: glutamate racemase; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: sli:Slin_5020 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; glutamate racemase 2347706..2348530 Runella slithyformis DSM 19594 10870574 YP_004655592.1 CDS Runsl_2044 NC_015703.1 2348536 2349837 R PFAM: Predicted permease; COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: mtt:Ftrac_3238 UspA domain-containing protein; PFAM: UspA; SPTR: Universal stress protein family; hypothetical protein complement(2348536..2349837) Runella slithyformis DSM 19594 10870575 YP_004655593.1 CDS Runsl_2045 NC_015703.1 2349974 2350816 D PFAM: Universal stress protein family; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: sli:Slin_3020 histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SPTR: Histidine kinase; UspA domain-containing protein 2349974..2350816 Runella slithyformis DSM 19594 10870576 YP_004655594.1 CDS Runsl_2046 NC_015703.1 2350824 2354573 R PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0316 conserved hypothetical protein; InterPro IPR000361; KEGG: dfe:Dfer_5062 HesB/YadR/YfhF-family protein; PFAM: FeS cluster biogenesis; SPTR: HesB/YadR/YfhF-family protein; integral membrane sensor signal transduction histidine kinase complement(2350824..2354573) Runella slithyformis DSM 19594 10870577 YP_004655595.1 CDS Runsl_2047 NC_015703.1 2354693 2354983 R PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein; KEGG: sli:Slin_3022 hypothetical protein; SPTR: uncharacterized protein; HesB/YadR/YfhF family protein complement(2354693..2354983) Runella slithyformis DSM 19594 10870578 YP_004655596.1 CDS Runsl_2048 NC_015703.1 2355081 2355608 D KEGG: sli:Slin_6007 endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; hypothetical protein 2355081..2355608 Runella slithyformis DSM 19594 10870579 YP_004655597.1 CDS Runsl_2049 NC_015703.1 2355627 2356817 R COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR006805:IPR015890; KEGG: dfe:Dfer_3790 anthranilate synthase; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal; PRIAM: Anthranilate synthase; SPTR: Anthranilate synthase; hypothetical protein complement(2355627..2356817) Runella slithyformis DSM 19594 10870580 YP_004655598.1 CDS Runsl_2050 NC_015703.1 2356947 2358392 R PFAM: chorismate binding enzyme; Anthranilate synthase component I, N terminal region; KEGG: sli:Slin_3627 hypothetical protein; SPTR: uncharacterized protein; anthranilate synthase complement(2356947..2358392) Runella slithyformis DSM 19594 10870581 YP_004655599.1 CDS Runsl_2051 NC_015703.1 2358641 2359255 R COGs: COG1678 transcriptional regulator protein; HAMAP: Protein of unknown function DUF179; InterPro IPR003774; KEGG: dfe:Dfer_4074 protein of unknown function DUF179; PFAM: Protein of unknown function DUF179; SPTR: UPF0301 protein M23134_01239; hypothetical protein complement(2358641..2359255) Runella slithyformis DSM 19594 10870582 YP_004655600.1 CDS Runsl_2052 NC_015703.1 2359359 2359913 R PFAM: Uncharacterized ACR, COG1678; COGs: COG2102 ATPase of PP-loop superfamily; InterPro IPR002761; KEGG: fjo:Fjoh_2929 ATP binding protein; PFAM: Protein of unknown function DUF71, ATP-binding region; SPTR: ANH superfamily adenosine nucleotide alpha hydrolase; TIGRFAM: Protein of unknown function DUF71, ATP-binding region; hypothetical protein complement(2359359..2359913) Runella slithyformis DSM 19594 10870583 YP_004655601.1 CDS Runsl_2053 NC_015703.1 2360102 2360788 R PFAM: ATP-binding region; TIGRFAM: MJ0570-related uncharacterized domain; KEGG: shg:Sph21_3372 hypothetical protein; SPTR: uncharacterized protein; ATP-binding protein complement(2360102..2360788) Runella slithyformis DSM 19594 10870584 YP_004655602.1 CDS Runsl_2054 NC_015703.1 2360803 2361393 R KEGG: dfe:Dfer_3393 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2360803..2361393) Runella slithyformis DSM 19594 10870585 YP_004655603.1 CDS Runsl_2055 NC_015703.1 2361802 2362476 R hypothetical protein complement(2361802..2362476) Runella slithyformis DSM 19594 10870586 YP_004655604.1 CDS Runsl_2056 NC_015703.1 2362483 2362788 R hypothetical protein complement(2362483..2362788) Runella slithyformis DSM 19594 10870587 YP_004655605.1 CDS Runsl_2057 NC_015703.1 2363544 2364140 R Prodigal; manually curated; hypothetical protein complement(2363544..2364140) Runella slithyformis DSM 19594 10870588 YP_004655606.1 CDS Runsl_2059 NC_015703.1 2365011 2365910 D PFAM: EamA-like transporter family; KEGG: sli:Slin_6041 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2365011..2365910 Runella slithyformis DSM 19594 10870590 YP_004655607.1 CDS Runsl_2060 NC_015703.1 2366010 2367743 R InterPro IPR001451; KEGG: sli:Slin_6090 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2366010..2367743) Runella slithyformis DSM 19594 10870591 YP_004655608.1 CDS Runsl_2061 NC_015703.1 2367807 2368991 R TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; COGs: COG0246 Mannitol-1-phosphate/altronate dehydrogenase; InterPro IPR013131:IPR013118; KEGG: sli:Slin_1056 mannitol dehydrogenase domain protein; PFAM: Mannitol dehydrogenase, C-terminal; Mannitol dehydrogenase, N-terminal; PRIAM: Tagaturonate reductase; SPTR: Mannitol dehydrogenase domain protein; hypothetical protein complement(2367807..2368991) Runella slithyformis DSM 19594 10870592 YP_004655609.1 CDS Runsl_2062 NC_015703.1 2369183 2370673 D PFAM: Mannitol dehydrogenase C-terminal domain; Mannitol dehydrogenase Rossmann domain; COGs: COG3358 conserved hypothetical protein; InterPro IPR012467; KEGG: sli:Slin_0288 hypothetical protein; PFAM: Protein of unknown function DUF1684; SPTR: uncharacterized protein; Tagaturonate reductase 2369183..2370673 Runella slithyformis DSM 19594 10870593 YP_004655610.1 CDS Runsl_2063 NC_015703.1 2370761 2371408 D PFAM: Protein of unknown function (DUF1684); KEGG: cyj:Cyan7822_0461 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2370761..2371408 Runella slithyformis DSM 19594 10870594 YP_004655611.1 CDS Runsl_2064 NC_015703.1 2371572 2372021 D COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; InterProIPR004532:IPR002547:IPR005146:IPR005147:IPR 005121; KEGG: sli:Slin_0287 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/B4 tRNA-binding domain; tRNA-binding region; tRNA synthetase, B5; Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding; SPTR: Phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; hypothetical protein 2371572..2372021 Runella slithyformis DSM 19594 10870595 YP_004655612.1 CDS Runsl_2065 NC_015703.1 2372162 2374582 D PFAM: tRNA synthetase B5 domain; Ferredoxin-fold anticodon binding domain; B3/4 domain; tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; phenylalanyl-tRNA synthetase subunit beta 2372162..2374582 Runella slithyformis DSM 19594 10870596 YP_004655613.1 CDS Runsl_2066 NC_015703.1 2374665 2375063 D KEGG: sli:Slin_0285 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2374665..2375063 Runella slithyformis DSM 19594 10870597 YP_004655614.1 CDS Runsl_2067 NC_015703.1 2375074 2375373 D COGs: COG1418 HD superfamily hydrolase; HAMAP: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; InterProIPR004087:IPR003607:IPR018111:IPR006674:IPR 017705:IPR006675; KEGG: dfe:Dfer_0007 phosphodiesterase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; K Homology, type 1, subgroup; SMART: Metal-dependent phosphohydrolase, HD region; K Homology; SPTR: RNA binding metal dependent phosphohydrolase; TIGRFAM: 2,3-cyclic-nucleotide 2-phosphodiesterase; HDIG; hypothetical protein 2375074..2375373 Runella slithyformis DSM 19594 10870598 YP_004655615.1 CDS Runsl_2068 NC_015703.1 2375473 2377038 D PFAM: KH domain; HD domain; Domain of unknown function (DUF3552); TIGRFAM: conserved hypothetical protein YmdA/YtgF; uncharacterized domain HDIG; COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: sli:Slin_5821 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein; 2,3 cyclic-nucleotide 2-phosphodiesterase 2375473..2377038 Runella slithyformis DSM 19594 10870599 YP_004655616.1 CDS Runsl_2069 NC_015703.1 2377276 2377836 R PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1; COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151:IPR004447; KEGG: sli:Slin_4394 carboxyl-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: Carboxyl-terminal protease; TIGRFAM: Peptidase S41A, C-terminal protease; thioesterase complement(2377276..2377836) Runella slithyformis DSM 19594 10870600 YP_004655617.1 CDS Runsl_2070 NC_015703.1 2377914 2379593 R PFAM: Peptidase S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterProIPR002421:IPR008918:IPR002562:IPR001098:IPR 020046:IPR020047:IPR018320; KEGG: dfe:Dfer_1096 DNA polymerase I; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease; DNA-directed DNA polymerase, family A, palm domain; SPTR: DNA polymerase I; TIGRFAM: DNA polymerase 1; carboxyl-terminal protease complement(2377914..2379593) Runella slithyformis DSM 19594 10870601 YP_004655618.1 CDS Runsl_2071 NC_015703.1 2379741 2382596 D PFAM: 5'-3' exonuclease, C-terminal SAM fold; 3'-5' exonuclease; 5'-3' exonuclease, N-terminal resolvase-like domain; DNA polymerase A; TIGRFAM: DNA polymerase I; KEGG: sli:Slin_4819 hypothetical protein; SPTR: uncharacterized protein; DNA polymerase I 2379741..2382596 Runella slithyformis DSM 19594 10870602 YP_004655619.1 CDS Runsl_2072 NC_015703.1 2382744 2383166 R KEGG: sli:Slin_5168 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2382744..2383166) Runella slithyformis DSM 19594 10870603 YP_004655620.1 CDS Runsl_2073 NC_015703.1 2383532 2383900 D hypothetical protein 2383532..2383900 Runella slithyformis DSM 19594 10870604 YP_004655621.1 CDS Runsl_2074 NC_015703.1 2383772 2384029 R COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR003335:IPR005791:IPR005665; KEGG: sli:Slin_5169 protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: Protein-export membrane protein SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein; SecF protein; hypothetical protein complement(2383772..2384029) Runella slithyformis DSM 19594 10870605 YP_004655622.1 CDS Runsl_2075 NC_015703.1 2384062 2387151 D PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: ran:Riean_1745 amino acid/polyamine/organocation transporter, apc superfamily; PFAM: Amino acid permease-associated region; SPTR: Amino acid/polyamine/organocation transporter, APC superfamily; protein-export membrane protein SecD 2384062..2387151 Runella slithyformis DSM 19594 10870606 YP_004655623.1 CDS Runsl_2076 NC_015703.1 2387355 2388842 D PFAM: Amino acid permease; KEGG: sli:Slin_4983 hypothetical protein; SPTR: uncharacterized protein; amino acid permease 2387355..2388842 Runella slithyformis DSM 19594 10870607 YP_004655624.1 CDS Runsl_2077 NC_015703.1 2388900 2389598 R InterPro IPR011662; KEGG: dfe:Dfer_2831 hypothetical protein; PFAM: Secretin/TonB, short N-terminal; SPTR: uncharacterized protein; hypothetical protein complement(2388900..2389598) Runella slithyformis DSM 19594 10870608 YP_004655625.1 CDS Runsl_2078 NC_015703.1 2389737 2391695 R PFAM: Secretin and TonB N terminus short domain; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: dfe:Dfer_2830 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; secretin/TonB short domain-containing protein complement(2389737..2391695) Runella slithyformis DSM 19594 10870609 YP_004655626.1 CDS Runsl_2079 NC_015703.1 2391709 2392761 R PFAM: FecR protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284:IPR014327; KEGG: dfe:Dfer_2829 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; anti-FecI sigma factor FecR complement(2391709..2392761) Runella slithyformis DSM 19594 10870610 YP_004655627.1 CDS Runsl_2080 NC_015703.1 2392776 2393354 R PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; ECF subfamily RNA polymerase sigma-24 subunit complement(2392776..2393354) Runella slithyformis DSM 19594 10870611 YP_004655628.1 CDS Runsl_2081 NC_015703.1 2393514 2393684 R COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: bwe:BcerKBAB4_1778 fatty acid desaturase; PFAM: Fatty acid desaturase, type 1; SPTR: fatty acid desaturase; hypothetical protein complement(2393514..2393684) Runella slithyformis DSM 19594 10870612 YP_004655629.1 CDS Runsl_2082 NC_015703.1 2393735 2394736 R PFAM: Fatty acid desaturase; InterPro IPR007921; KEGG: shw:Sputw3181_0259 CHAP domain-containing protein; PFAM: Cysteine, histidine-dependent amidohydrolase/peptidase; SPTR: CHAP domain-containing protein; fatty acid desaturase complement(2393735..2394736) Runella slithyformis DSM 19594 10870613 YP_004655630.1 CDS Runsl_2083 NC_015703.1 2394837 2395928 R PFAM: CHAP domain; InterPro IPR019734:IPR001440; KEGG: ter:Tery_3996 tetratricopeptide TPR_2; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide TPR_2; CHAP domain-containing protein complement(2394837..2395928) Runella slithyformis DSM 19594 10870614 YP_004655631.1 CDS Runsl_2084 NC_015703.1 2395991 2397922 D PFAM: Tetratricopeptide repeat; InterPro IPR019734:IPR001440; KEGG: bpo:BP951000_1446 TPR domain-containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: TPR domain-containing protein; hypothetical protein 2395991..2397922 Runella slithyformis DSM 19594 10870615 YP_004655632.1 CDS Runsl_2085 NC_015703.1 2397934 2398173 D PFAM: Tetratricopeptide repeat; InterPro IPR019734:IPR001440; KEGG: npu:Npun_R4324 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Similar to tr|Q8YMK7|Q8YMK7; hypothetical protein 2397934..2398173 Runella slithyformis DSM 19594 10870616 YP_004655633.1 CDS Runsl_2086 NC_015703.1 2398170 2398613 D PFAM: Tetratricopeptide repeat; hypothetical protein 2398170..2398613 Runella slithyformis DSM 19594 10870617 YP_004655634.1 CDS Runsl_2087 NC_015703.1 2398847 2398978 R KEGG: sli:Slin_1809 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2398847..2398978) Runella slithyformis DSM 19594 10870618 YP_004655635.1 CDS Runsl_2088 NC_015703.1 2399095 2399814 D PFAM: Protein of unknown function (DUF2807); COGs: COG0060 Isoleucyl-tRNA synthetase; HAMAP: Isoleucyl-tRNA synthetase; InterPro IPR002300:IPR013155:IPR002301; KEGG: dfe:Dfer_4664 isoleucyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ia; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; PRIAM: Isoleucine--tRNA ligase; SPTR: Isoleucyl-tRNA synthetase; TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; hypothetical protein 2399095..2399814 Runella slithyformis DSM 19594 10870619 YP_004655636.1 CDS Runsl_2089 NC_015703.1 2399943 2403398 D PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: isoleucyl-tRNA synthetase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_3427 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; isoleucyl-tRNA synthetase 2399943..2403398 Runella slithyformis DSM 19594 10870620 YP_004655637.1 CDS Runsl_2090 NC_015703.1 2403468 2404253 R PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3920 Signal transduction histidine kinase; InterPro IPR019734:IPR003594:IPR001440:IPR011495; KEGG: sli:Slin_3428 signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor region; Tetratricopeptide TPR-1; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; Tetratricopeptide repeat; SPTR: Signal transduction histidine kinase; LytTR family two component transcriptional regulator complement(2403468..2404253) Runella slithyformis DSM 19594 10870621 YP_004655638.1 CDS Runsl_2091 NC_015703.1 2404328 2406358 R PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro IPR004843; KEGG: sli:Slin_0042 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; signal transduction histidine kinase complement(2404328..2406358) Runella slithyformis DSM 19594 10870622 YP_004655639.1 CDS Runsl_2092 NC_015703.1 2406964 2409828 D PFAM: Calcineurin-like phosphoesterase; InterPro IPR000086; KEGG: dfe:Dfer_3691 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; metallophosphoesterase 2406964..2409828 Runella slithyformis DSM 19594 10870623 YP_004655640.1 CDS Runsl_2093 NC_015703.1 2409818 2410327 R PFAM: NUDIX domain; TIGRFAM: mutator mutT protein; KEGG: sli:Slin_5436 cytoplasmic protein; SPTR: cytoplasmic protein; NUDIX hydrolase complement(2409818..2410327) Runella slithyformis DSM 19594 10870624 YP_004655641.1 CDS Runsl_2094 NC_015703.1 2410452 2411960 D KEGG: sli:Slin_3498 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2410452..2411960 Runella slithyformis DSM 19594 10870625 YP_004655642.1 CDS Runsl_2095 NC_015703.1 2412065 2414551 R COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: sli:Slin_3471 gliding motility-associated ABC transporter ATP-binding subunit GldA; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Gliding motility-associated ABC transporter ATP-binding subunit GldA; hypothetical protein complement(2412065..2414551) Runella slithyformis DSM 19594 10870626 YP_004655643.1 CDS Runsl_2096 NC_015703.1 2414703 2415413 D PFAM: ABC transporter; TIGRFAM: gliding motility-associated ABC transporter ATP-binding subunit GldA; KEGG: dfe:Dfer_4156 hypothetical protein; SPTR: uncharacterized protein; sulfate-transporting ATPase 2414703..2415413 Runella slithyformis DSM 19594 10870627 YP_004655644.1 CDS Runsl_2097 NC_015703.1 2415495 2416151 D PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX); COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase; HAMAP: GTP cyclohydrolase-2; InterPro IPR000422:IPR000926; KEGG: sli:Slin_6384 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: DHBP synthase RibB; GTP cyclohydrolase II; SPTR: Riboflavin biosynthesis protein ribBA; TIGRFAM: DHBP synthase RibB; GTP cyclohydrolase II; hypothetical protein 2415495..2416151 Runella slithyformis DSM 19594 10870628 YP_004655645.1 CDS Runsl_2098 NC_015703.1 2416230 2417480 R PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; KEGG: sli:Slin_6385 hypothetical protein; SPTR: uncharacterized protein; GTP cyclohydrolase-2 complement(2416230..2417480) Runella slithyformis DSM 19594 10870629 YP_004655646.1 CDS Runsl_2099 NC_015703.1 2417630 2419582 D COGs: COG5337 Spore coat assembly protein; InterPro IPR014867; KEGG: gau:GAU_1784 hypothetical protein; PFAM: Spore coat protein CotH; SPTR: uncharacterized protein; hypothetical protein 2417630..2419582 Runella slithyformis DSM 19594 10870630 YP_004655647.1 CDS Runsl_2100 NC_015703.1 2419892 2421322 D PFAM: CotH protein; InterPro IPR018966; KEGG: hau:Haur_1490 hypothetical protein; PFAM: VTC domain; SPTR: uncharacterized protein; spore coat protein CotH 2419892..2421322 Runella slithyformis DSM 19594 10870631 YP_004655648.1 CDS Runsl_2101 NC_015703.1 2421323 2422129 D PFAM: VTC domain; KEGG: dal:Dalk_4019 hypothetical protein; SPTR: uncharacterized protein; VTC domain-containing protein 2421323..2422129 Runella slithyformis DSM 19594 10870632 YP_004655649.1 CDS Runsl_2102 NC_015703.1 2422158 2422820 D InterPro IPR019619; KEGG: bth:BT_3499 hypothetical protein; PFAM: Protein of unknown function DUF2490; SPTR: uncharacterized protein; hypothetical protein 2422158..2422820 Runella slithyformis DSM 19594 10870633 YP_004655650.1 CDS Runsl_2103 NC_015703.1 2422780 2423517 D PFAM: Protein of unknown function (DUF2490); COGs: COG1521 transcriptional regulator protein; HAMAP: Type III pantothenate kinase; InterPro IPR004619; KEGG: dfe:Dfer_4140 transcriptional acitvator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor; SPTR: Type III pantothenate kinase 1; TIGRFAM: Bordetella pertussis Bvg accessory factor; hypothetical protein 2422780..2423517 Runella slithyformis DSM 19594 10870634 YP_004655651.1 CDS Runsl_2104 NC_015703.1 2423555 2424331 R PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006102:IPR006103:IPR004199; KEGG: dfe:Dfer_4139 beta-galactosidase; PFAM: Glycoside hydrolase 2, TIM barrel; Glycoside hydrolase 2, carbohydrate-binding; Glycoside hydrolase 2, immunoglobulin-like beta-sandwich; Glycoside hydrolase, family 42, domain 5; PRIAM: Beta-galactosidase; SPTR: Beta-galactosidase; Baf family transcriptional acitvator complement(2423555..2424331) Runella slithyformis DSM 19594 10870635 YP_004655652.1 CDS Runsl_2105 NC_015703.1 2424566 2427967 D PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; Beta galactosidase small chain; COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: sli:Slin_5397 peptidase M16 domain protein; PFAM: Peptidase M16, N-terminal; Peptidase M16, C-terminal; SPTR: Peptidase M16 domain protein; beta-galactosidase 2424566..2427967 Runella slithyformis DSM 19594 10870636 YP_004655653.1 CDS Runsl_2106 NC_015703.1 2428030 2430834 R PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16); COGs: COG1739 conserved hypothetical protein; InterPro IPR001498; KEGG: psn:Pedsa_0904 uncharacterized protein family UPF0029, Impact, N-terminal protein; PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; SPTR: uncharacterized protein; peptidase M16 domain-containing protein complement(2428030..2430834) Runella slithyformis DSM 19594 10870637 YP_004655654.1 CDS Runsl_2107 NC_015703.1 2431008 2431622 D PFAM: Uncharacterized protein family UPF0029; TIGRFAM: uncharacterized protein, YigZ family; Prodigal; manually curated; hypothetical protein 2431008..2431622 Runella slithyformis DSM 19594 10870638 YP_004655655.1 CDS Runsl_2109 NC_015703.1 2432320 2432958 R SPTR: uncharacterized protein; hypothetical protein complement(2432320..2432958) Runella slithyformis DSM 19594 10870640 YP_004655656.1 CDS Runsl_2110 NC_015703.1 2433020 2433949 R InterPro IPR012910; KEGG: mtt:Ftrac_1561 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; hypothetical protein complement(2433020..2433949) Runella slithyformis DSM 19594 10870641 YP_004655657.1 CDS Runsl_2111 NC_015703.1 2433933 2436269 R PFAM: TonB-dependent Receptor Plug Domain; TonB-dependent receptor plug complement(2433933..2436269) Runella slithyformis DSM 19594 10870642 YP_004655658.1 CDS Runsl_2112 NC_015703.1 2436272 2437081 R hypothetical protein complement(2436272..2437081) Runella slithyformis DSM 19594 10870643 YP_004655659.1 CDS Runsl_2113 NC_015703.1 2437118 2437378 R KEGG: psn:Pedsa_1651 transcriptional regulator, Crp/Fnr family; SPTR: transcriptional regulator, Crp/Fnr family; hypothetical protein complement(2437118..2437378) Runella slithyformis DSM 19594 10870644 YP_004655660.1 CDS Runsl_2114 NC_015703.1 2437546 2438193 R COGs: COG0177 EndoIII-related endonuclease; InterPro IPR003265:IPR003651:IPR005759; KEGG: sli:Slin_6030 endonuclease III; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD domain; SPTR: Endonuclease III; TIGRFAM: Endonuclease III/Nth; Crp/Fnr family transcriptional regulator complement(2437546..2438193) Runella slithyformis DSM 19594 10870645 YP_004655661.1 CDS Runsl_2115 NC_015703.1 2438710 2439390 D PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: endonuclease III; COGs: COG1932 Phosphoserine aminotransferase; InterPro IPR000192; KEGG: sli:Slin_1073 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Phosphoserine transaminase; SPTR: Aminotransferase class V; endonuclease III 2438710..2439390 Runella slithyformis DSM 19594 10870646 YP_004655662.1 CDS Runsl_2116 NC_015703.1 2439468 2440553 D PFAM: Aminotransferase class-V; TIGRFAM: phosphoserine aminotransferase, COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: sli:Slin_1596 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; phosphoserine transaminase 2439468..2440553 Runella slithyformis DSM 19594 10870647 YP_004655663.1 CDS Runsl_2117 NC_015703.1 2440711 2441328 D PFAM: Protein of unknown function (DUF820); COGs: COG3542 conserved hypothetical protein; InterPro IPR009327; KEGG: sli:Slin_5607 hypothetical protein; PFAM: Protein of unknown function DUF985; SPTR: uncharacterized protein; hypothetical protein 2440711..2441328 Runella slithyformis DSM 19594 10870648 YP_004655664.1 CDS Runsl_2118 NC_015703.1 2441342 2441845 R PFAM: Cupin superfamily (DUF985); COGs: COG0024 Methionine aminopeptidase; InterPro IPR000994:IPR002467; KEGG: cpi:Cpin_0635 methionine aminopeptidase, type I; PFAM: Peptidase M24, structural domain; PRIAM: Methionyl aminopeptidase; SPTR: Methionine aminopeptidase; TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; hypothetical protein complement(2441342..2441845) Runella slithyformis DSM 19594 10870649 YP_004655665.1 CDS Runsl_2119 NC_015703.1 2441848 2442612 R PFAM: Metallopeptidase M24; TIGRFAM: methionine aminopeptidase, type I; COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544; KEGG: dfe:Dfer_3559 aminotransferase class IV; PFAM: Aminotransferase, class IV; PRIAM: D-amino-acid transaminase; SPTR: Aminotransferase class IV; methionine aminopeptidase complement(2441848..2442612) Runella slithyformis DSM 19594 10870650 YP_004655666.1 CDS Runsl_2120 NC_015703.1 2442759 2443592 R PFAM: Aminotransferase class IV; KEGG: lby:Lbys_2831 TonB-dependent receptor; SPTR: TonB-dependent receptor; D-amino-acid transaminase complement(2442759..2443592) Runella slithyformis DSM 19594 10870651 YP_004655667.1 CDS Runsl_2121 NC_015703.1 2443754 2446642 D InterPro IPR019115; KEGG: sli:Slin_3442 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: uncharacterized protein; TonB-dependent receptor 2443754..2446642 Runella slithyformis DSM 19594 10870652 YP_004655668.1 CDS Runsl_2122 NC_015703.1 2446704 2447435 D PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; COGs: COG5002 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: lby:Lbys_2833 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Integral membrane sensor signal transduction histidine kinase; hypothetical protein 2446704..2447435 Runella slithyformis DSM 19594 10870653 YP_004655669.1 CDS Runsl_2123 NC_015703.1 2447486 2449321 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: lby:Lbys_2834 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family; integral membrane sensor signal transduction histidine kinase 2447486..2449321 Runella slithyformis DSM 19594 10870654 YP_004655670.1 CDS Runsl_2124 NC_015703.1 2449353 2450042 D PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; InterPro IPR008631; KEGG: dfe:Dfer_3735 glycogen (starch) synthase; PFAM: Glycogen synthase; PRIAM: Glycogen(starch) synthase; SPTR: Glycogen (Starch) synthase; winged helix family two component transcriptional regulator 2449353..2450042 Runella slithyformis DSM 19594 10870655 YP_004655671.1 CDS Runsl_2125 NC_015703.1 2450516 2452333 D PFAM: Glycogen synthase; COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: chu:CHU_2256 Zn-dependent hydrolase; SPTR: Possible Zn-dependent hydrolase; glycogen(starch) synthase 2450516..2452333 Runella slithyformis DSM 19594 10870656 YP_004655672.1 CDS Runsl_2126 NC_015703.1 2452379 2453524 R COGs: COG4299 conserved hypothetical protein; InterPro IPR019259; KEGG: dfe:Dfer_2495 hypothetical protein; PFAM: Protein of unknown function DUF2261, transmembrane; SPTR: uncharacterized protein; Zn-dependent hydrolase complement(2452379..2453524) Runella slithyformis DSM 19594 10870657 YP_004655673.1 CDS Runsl_2127 NC_015703.1 2453608 2454789 D COGs: COG0730 permease; InterPro IPR002781; KEGG: fjo:Fjoh_1500 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: uncharacterized protein; hypothetical protein 2453608..2454789 Runella slithyformis DSM 19594 10870658 YP_004655674.1 CDS Runsl_2128 NC_015703.1 2454995 2455900 D PFAM: Sulfite exporter TauE/SafE; COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277; KEGG: dfe:Dfer_2612 cystathionine gamma-synthase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; SPTR: Cystathionine gamma-synthase; hypothetical protein 2454995..2455900 Runella slithyformis DSM 19594 10870659 YP_004655675.1 CDS Runsl_2129 NC_015703.1 2456008 2457198 D PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: O-succinylhomoserine sulfhydrylase; COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; InterPro IPR002500:IPR004511:IPR011798; KEGG: dfe:Dfer_2615 adenylylsulfate reductase, thioredoxin dependent; PFAM: Phosphoadenosine phosphosulphate reductase; PRIAM: Phosphoadenylyl-sulfate reductase (thioredoxin); SPTR: Adenylylsulfate reductase, thioredoxin dependent; TIGRFAM: Adenylylsulphate reductase, thioredoxin dependent; Phosphoadenosine phosphosulphate reductase CysH-type; Cys/Met metabolism pyridoxal-phosphate-dependent protein 2456008..2457198 Runella slithyformis DSM 19594 10870660 YP_004655676.1 CDS Runsl_2130 NC_015703.1 2457221 2457934 D PFAM: Phosphoadenosine phosphosulfate reductase; TIGRFAM: thioredoxin-dependent adenylylsulfate APS reductase; phosophoadenylyl-sulfate reductase (thioredoxin); InterPro IPR008815; KEGG: mtt:Ftrac_1685 s23 ribosomal protein; PFAM: 23S rRNA-associated protein; SPTR: Intervening sequence; adenylylsulfate reductase 2457221..2457934 Runella slithyformis DSM 19594 10870661 YP_004655677.1 CDS Runsl_2131 NC_015703.1 2458020 2458385 D PFAM: S23 ribosomal protein; COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; InterPro IPR002500:IPR011784; KEGG: dfe:Dfer_2616 sulfate adenylyltransferase subunit 2; PFAM: Phosphoadenosine phosphosulphate reductase; PRIAM: Sulfate adenylyltransferase; SPTR: Sulfate adenylyltransferase, small subunit; TIGRFAM: Sulphate adenylyltransferase, small subunit; S23 ribosomal protein 2458020..2458385 Runella slithyformis DSM 19594 10870662 YP_004655678.1 CDS Runsl_2132 NC_015703.1 2458389 2459321 D PFAM: Phosphoadenosine phosphosulfate reductase; TIGRFAM: sulfate adenylyltransferase, small subunit; COGs: COG2895 GTPase - Sulfate adenylate transferase subunit 1; InterPro IPR000795:IPR004161:IPR005225:IPR011779; KEGG: dfe:Dfer_2617 sulfate adenylyltransferase, large subunit; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; PRIAM: Sulfate adenylyltransferase; SPTR: Sulfate adenylyltransferase, large subunit; TIGRFAM: Sulphate adenylyltransferase, large subunit; Small GTP-binding protein; sulfate adenylyltransferase, small subunit 2458389..2459321 Runella slithyformis DSM 19594 10870663 YP_004655679.1 CDS Runsl_2133 NC_015703.1 2459405 2460652 D PFAM: Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: sulfate adenylyltransferase, large subunit; small GTP-binding protein domain; COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: sli:Slin_0456 glycosyl hydrolase 88; PFAM: Glycosyl hydrolase, family 88; SPTR: Glycosyl hydrolase 88; sulfate adenylyltransferase, large subunit 2459405..2460652 Runella slithyformis DSM 19594 10870664 YP_004655680.1 CDS Runsl_2134 NC_015703.1 2461003 2462376 D PFAM: Glycosyl Hydrolase 88; Prodigal; manually curated; glycoside hydrolase 2461003..2462376 Runella slithyformis DSM 19594 10870665 YP_004655681.1 CDS Runsl_2136 NC_015703.1 2462559 2463713 R COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: sli:Slin_1806 glycosyl hydrolase 88; PFAM: Glycosyl hydrolase, family 88; SPTR: Glycosyl hydrolase 88; ATPase AAA complement(2462559..2463713) Runella slithyformis DSM 19594 10870667 YP_004655682.1 CDS Runsl_2137 NC_015703.1 2463796 2464917 D PFAM: Glycosyl Hydrolase 88; COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR000524; KEGG: sli:Slin_3237 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; SPTR: Transcriptional regulator, GntR family; glycoside hydrolase 2463796..2464917 Runella slithyformis DSM 19594 10870668 YP_004655683.1 CDS Runsl_2138 NC_015703.1 2465018 2466304 R PFAM: Bacterial regulatory proteins, gntR family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_4386 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; GntR family transcriptional regulator complement(2465018..2466304) Runella slithyformis DSM 19594 10870669 YP_004655684.1 CDS Runsl_2139 NC_015703.1 2466426 2467205 R PFAM: Response regulator receiver domain; LytTr DNA-binding domain; KEGG: dfe:Dfer_4105 hypothetical protein; SPTR: uncharacterized protein; LytTR family two component transcriptional regulator complement(2466426..2467205) Runella slithyformis DSM 19594 10870670 YP_004655685.1 CDS Runsl_2140 NC_015703.1 2467217 2467936 D COGs: COG4232 Thiol:disulfide interchange protein; InterPro IPR003834; KEGG: dfe:Dfer_4173 cytochrome c biogenesis protein transmembrane region; PFAM: Cytochrome c assembly protein, transmembrane region; PRIAM: Protein-disulfide reductase; SPTR: Cytochrome c biogenesis protein transmembrane region; hypothetical protein 2467217..2467936 Runella slithyformis DSM 19594 10870671 YP_004655686.1 CDS Runsl_2141 NC_015703.1 2467972 2470029 D PFAM: Cytochrome C biogenesis protein transmembrane region; Protein of unknown function, DUF255; COGs: COG0795 permease; InterPro IPR005495; KEGG: sli:Slin_2956 permease YjgP/YjgQ family protein; PFAM: Permease YjgP/YjgQ, predicted; SPTR: Permease YjgP/YjgQ family protein; protein-disulfide reductase 2467972..2470029 Runella slithyformis DSM 19594 10870672 YP_004655687.1 CDS Runsl_2142 NC_015703.1 2470229 2471305 D PFAM: Predicted permease YjgP/YjgQ family; YjgP/YjgQ family permease 2470229..2471305 Runella slithyformis DSM 19594 10870673 YP_004655688.1 CDS Runsl_2143 NC_015703.1 2471413 2471634 D KEGG: sli:Slin_5131 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2471413..2471634 Runella slithyformis DSM 19594 10870674 YP_004655689.1 CDS Runsl_2144 NC_015703.1 2471624 2471959 D PFAM: Protein of unknown function (DUF1044); COGs: COG0308 Aminopeptidase N; KEGG: sli:Slin_5082 Zn-dependent aminopeptidase; SPTR: Zn-dependent aminopeptidase; hypothetical protein 2471624..2471959 Runella slithyformis DSM 19594 10870675 YP_004655690.1 CDS Runsl_2145 NC_015703.1 2471956 2474328 D PFAM: Peptidase M1; COGs: COG3173 aminoglycoside phosphotransferase; InterPro IPR002575; KEGG: sli:Slin_1393 aminoglycoside phosphotransferase; PFAM: Aminoglycoside phosphotransferase; SPTR: Aminoglycoside phosphotransferase; Zn-dependent aminopeptidase 2471956..2474328 Runella slithyformis DSM 19594 10870676 YP_004655691.1 CDS Runsl_2146 NC_015703.1 2474434 2475507 D PFAM: Phosphotransferase enzyme family; KEGG: dfe:Dfer_1194 hypothetical protein; SPTR: uncharacterized protein; aminoglycoside phosphotransferase 2474434..2475507 Runella slithyformis DSM 19594 10870677 YP_004655692.1 CDS Runsl_2147 NC_015703.1 2475565 2475903 R COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_3233 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; hypothetical protein complement(2475565..2475903) Runella slithyformis DSM 19594 10870678 YP_004655693.1 CDS Runsl_2148 NC_015703.1 2475981 2477312 R PFAM: Outer membrane efflux protein; COGs: COG1574 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR013108; KEGG: sli:Slin_3234 amidohydrolase; PFAM: Amidohydrolase 3; SPTR: Amidohydrolase 3; outer membrane efflux protein complement(2475981..2477312) Runella slithyformis DSM 19594 10870679 YP_004655694.1 CDS Runsl_2149 NC_015703.1 2477466 2479097 D PFAM: Amidohydrolase; KEGG: cpi:Cpin_0983 hypothetical protein; SPTR: uncharacterized protein; amidohydrolase 2477466..2479097 Runella slithyformis DSM 19594 10870680 YP_004655695.1 CDS Runsl_2150 NC_015703.1 2479278 2479652 D hypothetical protein 2479278..2479652 Runella slithyformis DSM 19594 10870681 YP_004655696.1 CDS Runsl_2151 NC_015703.1 2479594 2480019 D KEGG: dfe:Dfer_2869 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2479594..2480019 Runella slithyformis DSM 19594 10870682 YP_004655697.1 CDS Runsl_2152 NC_015703.1 2480399 2481598 D KEGG: lby:Lbys_0531 peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: Peptidase S8 and S53 subtilisin kexin sedolisin; hypothetical protein 2480399..2481598 Runella slithyformis DSM 19594 10870683 YP_004655698.1 CDS Runsl_2153 NC_015703.1 2481543 2481893 D InterPro IPR005821; KEGG: sli:Slin_0024 ion transporter; PFAM: Ion transport; SPTR: Ion transport protein; peptidase S8 and S53 subtilisin kexin sedolisin 2481543..2481893 Runella slithyformis DSM 19594 10870684 YP_004655699.1 CDS Runsl_2154 NC_015703.1 2482021 2482866 D PFAM: Ion transport protein; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dfe:Dfer_2953 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; ion transport protein 2482021..2482866 Runella slithyformis DSM 19594 10870685 YP_004655700.1 CDS Runsl_2155 NC_015703.1 2482866 2483999 D PFAM: Glycosyl transferases group 1; COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR001678; KEGG: sli:Slin_5890 Fmu (Sun) domain protein; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; SPTR: Fmu (Sun) domain protein; group 1 glycosyl transferase 2482866..2483999 Runella slithyformis DSM 19594 10870686 YP_004655701.1 CDS Runsl_2156 NC_015703.1 2484086 2485444 D PFAM: NOL1/NOP2/sun family; KEGG: atm:ANT_29240 glycosyltransferase; SPTR: glycosyltransferase; Fmu (Sun) domain-containing protein 2484086..2485444 Runella slithyformis DSM 19594 10870687 YP_004655702.1 CDS Runsl_2157 NC_015703.1 2485569 2486609 D hypothetical protein 2485569..2486609 Runella slithyformis DSM 19594 10870688 YP_004655703.1 CDS Runsl_2158 NC_015703.1 2486520 2486732 R InterPro IPR012910:IPR000531; KEGG: cpi:Cpin_3725 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; hypothetical protein complement(2486520..2486732) Runella slithyformis DSM 19594 10870689 YP_004655704.1 CDS Runsl_2159 NC_015703.1 2486732 2489686 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; KEGG: chu:CHU_1318 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor complement(2486732..2489686) Runella slithyformis DSM 19594 10870690 YP_004655705.1 CDS Runsl_2160 NC_015703.1 2489797 2490906 D PFAM: Protein of unknown function (DUF3089); hypothetical protein 2489797..2490906 Runella slithyformis DSM 19594 10870691 YP_004655706.1 CDS Runsl_2161 NC_015703.1 2490879 2490986 R COGs: COG0836 Mannose-1-phosphate guanylyltransferase; InterPro IPR005835; KEGG: sli:Slin_5196 mannose-1-phosphate guanylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Mannose-1-phosphate guanylyltransferase; SPTR: Mannose-1-phosphate guanylyltransferase; manually curated; hypothetical protein complement(2490879..2490986) Runella slithyformis DSM 19594 10870692 YP_004655707.1 CDS Runsl_2162 NC_015703.1 2490992 2492059 D PFAM: Nucleotidyl transferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006175; KEGG: nde:NIDE0050 endoribonuclease L-PSP, YjgF-like; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP; mannose-1-phosphate guanylyltransferase 2490992..2492059 Runella slithyformis DSM 19594 10870693 YP_004655708.1 CDS Runsl_2163 NC_015703.1 2492116 2492505 R PFAM: Endoribonuclease L-PSP; COGs: COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; HAMAP: Molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: sli:Slin_2808 hypothetical protein; SPTR: Molybdenum cofactor biosynthesis protein C; endoribonuclease L-PSP complement(2492116..2492505) Runella slithyformis DSM 19594 10870694 YP_004655709.1 CDS Runsl_2164 NC_015703.1 2492623 2493180 R COGs: COG0429 hydrolase of the alpha/beta-hydrolase fold; InterPro IPR000073; KEGG: dfe:Dfer_4689 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; molybdopterin-guanine dinucleotide biosynthesis protein A complement(2492623..2493180) Runella slithyformis DSM 19594 10870695 YP_004655710.1 CDS Runsl_2165 NC_015703.1 2493177 2494172 R PFAM: alpha/beta hydrolase fold; COGs: COG0274 Deoxyribose-phosphate aldolase; InterPro IPR002915; KEGG: sli:Slin_4419 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; SPTR: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; alpha/beta hydrolase complement(2493177..2494172) Runella slithyformis DSM 19594 10870696 YP_004655711.1 CDS Runsl_2166 NC_015703.1 2494213 2494842 R PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase; InterPro IPR000209; KEGG: sli:Slin_5990 hypothetical protein; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: uncharacterized protein; deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase complement(2494213..2494842) Runella slithyformis DSM 19594 10870697 YP_004655712.1 CDS Runsl_2167 NC_015703.1 2494855 2497659 R PFAM: Subtilase; InterPro IPR000209; KEGG: sli:Slin_5991 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Peptidase S8 and S53 subtilisin kexin sedolisin; peptidase S8 and S53 subtilisin kexin sedolisin complement(2494855..2497659) Runella slithyformis DSM 19594 10870698 YP_004655713.1 CDS Runsl_2168 NC_015703.1 2497683 2501696 R PFAM: Subtilase; InterPro IPR004691:IPR018402; KEGG: sli:Slin_1551 malonate transporter MadM subunit; PFAM: Malonate/sodium symporter MadM subunit, N-terminal; SPTR: Malonate transporter, MadM subunit; TIGRFAM: Malonate/sodium symporter MadM subunit; peptidase S8 and S53 subtilisin kexin sedolisin complement(2497683..2501696) Runella slithyformis DSM 19594 10870699 YP_004655714.1 CDS Runsl_2169 NC_015703.1 2501816 2502580 R PFAM: Malonate/sodium symporter MadM subunit; TIGRFAM: malonate transporter, MadM subunit; InterPro IPR004690; KEGG: sli:Slin_1552 malonate transporter MadL subunit; PFAM: Malonate transporter MadL subunit; SPTR: Malonate transporter, MadL subunit; TIGRFAM: Malonate transporter MadL subunit; malonate transporter subunit MadM complement(2501816..2502580) Runella slithyformis DSM 19594 10870700 YP_004655715.1 CDS Runsl_2170 NC_015703.1 2502583 2502951 R PFAM: Malonate transporter MadL subunit; TIGRFAM: malonate transporter, MadL subunit; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: sli:Slin_1553 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: AMP-dependent synthetase and ligase; malonate transporter subunit MadL complement(2502583..2502951) Runella slithyformis DSM 19594 10870701 YP_004655716.1 CDS Runsl_2171 NC_015703.1 2502998 2504482 R PFAM: AMP-binding enzyme; COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593:IPR011579; KEGG: mtt:Ftrac_2734 hypothetical protein; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; long-chain-fatty-acid--CoA ligase complement(2502998..2504482) Runella slithyformis DSM 19594 10870702 YP_004655717.1 CDS Runsl_2172 NC_015703.1 2504784 2506139 D PFAM: Nuclease-related domain; COGs: COG1284 conserved hypothetical protein; InterPro IPR003740:IPR019264; KEGG: sli:Slin_1588 hypothetical protein; PFAM: Protein of unknown function DUF2179; Protein of unknown function DUF161; SPTR: uncharacterized protein; ATPase AAA 2504784..2506139 Runella slithyformis DSM 19594 10870703 YP_004655718.1 CDS Runsl_2173 NC_015703.1 2506494 2507363 R PFAM: Uncharacterized BCR, YitT family COG1284; Uncharacterized protein conserved in bacteria (DUF2179); manually curated; hypothetical protein complement(2506494..2507363) Runella slithyformis DSM 19594 10870704 YP_004655719.1 CDS Runsl_2175 NC_015703.1 2507714 2508226 D PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: sli:Slin_3447 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; AraC family transcriptional regulator 2507714..2508226 Runella slithyformis DSM 19594 10870706 YP_004655720.1 CDS Runsl_2176 NC_015703.1 2508304 2508897 D PFAM: Acyltransferase; COGs: COG0381 UDP-N-acetylglucosamine 2-epimerase; InterPro IPR003331; KEGG: acd:AOLE_19095 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; PRIAM: UDP-N-acetylglucosamine 2-epimerase; SPTR: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; phospholipid/glycerol acyltransferase 2508304..2508897 Runella slithyformis DSM 19594 10870707 YP_004655721.1 CDS Runsl_2177 NC_015703.1 2508961 2510079 R PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; COGs: COG1393 Arsenate reductase and related protein glutaredoxin family; InterPro IPR006504:IPR006660; KEGG: bpl:BURPS1106A_2506 ArsC family protein; PFAM: Arsenate reductase-like; SPTR: ArsC family protein; TIGRFAM: Conserved hypothetical protein, ArsC related; UDP-N-acetylglucosamine 2-epimerase complement(2508961..2510079) Runella slithyformis DSM 19594 10870708 YP_004655722.1 CDS Runsl_2178 NC_015703.1 2510169 2510513 R PFAM: ArsC family; TIGRFAM: transcriptional regulator, Spx/MgsR family; KEGG: sli:Slin_1736 hypothetical protein; SPTR: uncharacterized protein; ArsC family protein complement(2510169..2510513) Runella slithyformis DSM 19594 10870709 YP_004655723.1 CDS Runsl_2179 NC_015703.1 2510587 2511021 D COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_3963 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; hypothetical protein 2510587..2511021 Runella slithyformis DSM 19594 10870710 YP_004655724.1 CDS Runsl_2180 NC_015703.1 2511051 2511797 R PFAM: ABC transporter; COGs: COG0805 Sec-independent protein secretion pathway component TatC; InterPro IPR019822:IPR002033; KEGG: dfe:Dfer_3888 sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; SPTR: Sec-independent protein translocase, TatC subunit; TIGRFAM: Twin arginine-targeting protein translocase, TatC; phosphonate-transporting ATPase complement(2511051..2511797) Runella slithyformis DSM 19594 10870711 YP_004655725.1 CDS Runsl_2181 NC_015703.1 2511804 2512706 R PFAM: Sec-independent protein translocase (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC; KEGG: dfe:Dfer_4243 hypothetical protein; SPTR: uncharacterized protein; Sec-independent protein translocase subunit TatC complement(2511804..2512706) Runella slithyformis DSM 19594 10870712 YP_004655726.1 CDS Runsl_2182 NC_015703.1 2513006 2513434 D COGs: COG1646 phosphate-binding protein with TIM-barrel fold; HAMAP: Geranylgeranylglyceryl phosphate synthase; InterPro IPR010946:IPR008205; KEGG: dfe:Dfer_4244 geranylgeranylglyceryl phosphate synthase-like protein; PFAM: Geranylgeranylglyceryl phosphate synthase-like; SPTR: Geranylgeranylglyceryl phosphate synthase; TIGRFAM: Geranylgeranylglyceryl phosphate synthase; Geranylgeranylglyceryl phosphate synthase-like; hypothetical protein 2513006..2513434 Runella slithyformis DSM 19594 10870713 YP_004655727.1 CDS Runsl_2183 NC_015703.1 2513400 2514161 D PFAM: PcrB family; TIGRFAM: geranylgeranylglyceryl phosphate synthase; phosphoglycerol geranylgeranyltransferase; KEGG: sli:Slin_0252 hypothetical protein; SPTR: uncharacterized protein; geranylgeranylglyceryl phosphate synthase 2513400..2514161 Runella slithyformis DSM 19594 10870714 YP_004655728.1 CDS Runsl_2184 NC_015703.1 2514172 2515719 R COGs: COG0018 Arginyl-tRNA synthetase; HAMAP: Arginyl-tRNA synthetase, class Ic; InterPro IPR001278:IPR005148:IPR015945:IPR008909; KEGG: dfe:Dfer_2678 arginyl-tRNA synthetase; PFAM: DALR anticodon binding; Arginyl-tRNA synthetase, class Ic, core; Arginyl tRNA synthetase, class Ic, N-terminal; PRIAM: Arginine--tRNA ligase; SPTR: Arginyl-tRNA synthetase; TIGRFAM: Arginyl-tRNA synthetase, class Ic; hypothetical protein complement(2514172..2515719) Runella slithyformis DSM 19594 10870715 YP_004655729.1 CDS Runsl_2185 NC_015703.1 2515990 2517768 D PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase; InterPro IPR000182; KEGG: npu:Npun_R0931 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; arginyl-tRNA synthetase 2515990..2517768 Runella slithyformis DSM 19594 10870716 YP_004655730.1 CDS Runsl_2186 NC_015703.1 2517817 2518278 R PFAM: Acetyltransferase (GNAT) family; COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR004527:IPR020058; KEGG: dfe:Dfer_4262 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; PRIAM: Glutamate--tRNA ligase; SPTR: Glutamyl-tRNA synthetase; TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; N-acetyltransferase GCN5 complement(2517817..2518278) Runella slithyformis DSM 19594 10870717 YP_004655731.1 CDS Runsl_2187 NC_015703.1 2518473 2519990 D PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: dfe:Dfer_3647 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; glutamyl-tRNA synthetase 2518473..2519990 Runella slithyformis DSM 19594 10870718 YP_004655732.1 CDS Runsl_2188 NC_015703.1 2520026 2520676 D PFAM: Protein of unknown function (DUF820); COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR010140:IPR004013; KEGG: tro:trd_A0397 histidinol-phosphatase; PFAM: PHP, C-terminal; SPTR: histidinol-phosphatase; TIGRFAM: Histidinol phosphate phosphatase, HisJ; hypothetical protein 2520026..2520676 Runella slithyformis DSM 19594 10870719 YP_004655733.1 CDS Runsl_2189 NC_015703.1 2520673 2521557 D PFAM: PHP domain; TIGRFAM: histidinol phosphate phosphatase HisJ family; KEGG: phe:Phep_3158 hypothetical protein; HisJ family histidinol phosphate phosphatase 2520673..2521557 Runella slithyformis DSM 19594 10870720 YP_004655734.1 CDS Runsl_2190 NC_015703.1 2521606 2522070 R COGs: COG1476 transcriptional regulator protein; InterPro IPR001387; KEGG: sli:Slin_0313 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: uncharacterized protein; hypothetical protein complement(2521606..2522070) Runella slithyformis DSM 19594 10870721 YP_004655735.1 CDS Runsl_2191 NC_015703.1 2522193 2522393 R PFAM: Helix-turn-helix; KEGG: sli:Slin_0312 hypothetical protein; SPTR: uncharacterized protein; XRE family transcriptional regulator complement(2522193..2522393) Runella slithyformis DSM 19594 10870722 YP_004655736.1 CDS Runsl_2192 NC_015703.1 2522390 2522887 R COGs: COG1528 Ferritin-like protein; InterPro IPR008331; KEGG: dfe:Dfer_2507 ferritin Dps family protein; PFAM: Ferritin/Dps protein; SPTR: Ferritin Dps family protein; hypothetical protein complement(2522390..2522887) Runella slithyformis DSM 19594 10870723 YP_004655737.1 CDS Runsl_2193 NC_015703.1 2523058 2523603 R PFAM: Ferritin-like domain; InterPro IPR006104; KEGG: dfe:Dfer_3461 hypothetical protein; PFAM: Glycoside hydrolase 2, carbohydrate-binding; SPTR: uncharacterized protein; ferritin complement(2523058..2523603) Runella slithyformis DSM 19594 10870724 YP_004655738.1 CDS Runsl_2194 NC_015703.1 2523804 2526428 D PFAM: Glycosyl hydrolases family 2, sugar binding domain; KEGG: sli:Slin_4047 hypothetical protein; SPTR: uncharacterized protein; glycoside hydrolase 2523804..2526428 Runella slithyformis DSM 19594 10870725 YP_004655739.1 CDS Runsl_2195 NC_015703.1 2526614 2527771 D COGs: COG1859 RNA:NAD 2'-phosphotransferase; HAMAP: RNA 2'-phosphotransferase; InterPro IPR002745; KEGG: ava:Ava_4639 RNA 2'-phosphotransferase-like protein; PFAM: Phosphotransferase KptA/Tpt1; SPTR: Probable RNA 2'-phosphotransferase; hypothetical protein 2526614..2527771 Runella slithyformis DSM 19594 10870726 YP_004655740.1 CDS Runsl_2196 NC_015703.1 2527756 2528307 D PFAM: RNA 2'-phosphotransferase, Tpt1 / KptA family; COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR013216:IPR001310; KEGG: sli:Slin_4049 histidine triad (HIT) protein; PFAM: Histidine triad (HIT) protein; Methyltransferase type 11; SPTR: Histidine triad (HIT) protein; RNA 2'-phosphotransferase 2527756..2528307 Runella slithyformis DSM 19594 10870727 YP_004655741.1 CDS Runsl_2197 NC_015703.1 2528291 2529136 D PFAM: HIT domain; KEGG: bfr:BF2709 hypothetical protein; SPTR: uncharacterized protein; histidine triad (HIT) protein 2528291..2529136 Runella slithyformis DSM 19594 10870728 YP_004655742.1 CDS Runsl_2198 NC_015703.1 2529288 2530004 D PFAM: RNA ligase; COGs: COG4639 kinase; KEGG: cpi:Cpin_6277 hypothetical protein; SPTR: tRNA nucleotidyltransferase/poly(A) polymerase; hypothetical protein 2529288..2530004 Runella slithyformis DSM 19594 10870729 YP_004655743.1 CDS Runsl_2199 NC_015703.1 2529985 2531091 D PFAM: HD domain; COGs: COG0514 Superfamily II DNA helicase; InterProIPR006293:IPR018329:IPR014001:IPR001650:IPR 002121:IPR011545:IPR018982; KEGG: dfe:Dfer_3877 ATP-dependent DNA helicase RecQ; PFAM: RQC domain; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type, N-terminal; hypothetical protein 2529985..2531091 Runella slithyformis DSM 19594 10870730 YP_004655744.1 CDS Runsl_2200 NC_015703.1 2531337 2533484 D PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; COGs: COG1770 Protease II; InterPro IPR004106:IPR001375; KEGG: sli:Slin_4734 oligopeptidase B; PFAM: Peptidase S9A, oligopeptidase, N-terminal beta-propeller; Peptidase S9, prolyl oligopeptidase, catalytic domain; PRIAM: Oligopeptidase B; SPTR: Oligopeptidase B; ATP-dependent DNA helicase RecQ 2531337..2533484 Runella slithyformis DSM 19594 10870731 YP_004655745.1 CDS Runsl_2201 NC_015703.1 2534023 2536098 R PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: psn:Pedsa_2729 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; oligopeptidase B complement(2534023..2536098) Runella slithyformis DSM 19594 10870732 YP_004655746.1 CDS Runsl_2202 NC_015703.1 2536181 2536762 D PFAM: Protein of unknown function (DUF820); COGs: COG0663 Carbonic anhydrase/acetyltransferase isoleucine patch superfamily; InterPro IPR001451; KEGG: lby:Lbys_3230 carbonic anhydrase/acetyltransferase isoleucine patch superfamily-like protein; SPTR: Carbonic anhydrase/acetyltransferase isoleucine patch superfamily-like protein; hypothetical protein 2536181..2536762 Runella slithyformis DSM 19594 10870733 YP_004655747.1 CDS Runsl_2203 NC_015703.1 2536755 2537279 R COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_1837 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; isoleucine patch superfamily carbonic anhydrase/acetyltransferase complement(2536755..2537279) Runella slithyformis DSM 19594 10870734 YP_004655748.1 CDS Runsl_2204 NC_015703.1 2537440 2538489 D PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_1836 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; signal transduction histidine kinase 2537440..2538489 Runella slithyformis DSM 19594 10870735 YP_004655749.1 CDS Runsl_2205 NC_015703.1 2538504 2539274 D PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_3785 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: GDP-L-fucose synthase; SPTR: NAD-dependent epimerase/dehydratase; LytTR family two component transcriptional regulator 2538504..2539274 Runella slithyformis DSM 19594 10870736 YP_004655750.1 CDS Runsl_2206 NC_015703.1 2539336 2540277 D PFAM: NAD dependent epimerase/dehydratase; COGs: COG0761 Penicillin tolerance protein; InterPro IPR003451; KEGG: dfe:Dfer_3543 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein; PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SPTR: Hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: LytB protein; GDP-L-fucose synthase 2539336..2540277 Runella slithyformis DSM 19594 10870737 YP_004655751.1 CDS Runsl_2207 NC_015703.1 2540407 2541633 R PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming); InterPro IPR004843; KEGG: dfe:Dfer_3294 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; hydroxymethylbutenyl pyrophosphate reductase complement(2540407..2541633) Runella slithyformis DSM 19594 10870738 YP_004655752.1 CDS Runsl_2208 NC_015703.1 2541750 2542541 R PFAM: Calcineurin-like phosphoesterase; COGs: COG0169 Shikimate 5-dehydrogenase; InterPro IPR013708:IPR006151; KEGG: dfe:Dfer_4321 shikimate dehydrogenase substrate binding domain protein; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; SPTR: Shikimate dehydrogenase substrate binding domain protein; metallophosphoesterase complement(2541750..2542541) Runella slithyformis DSM 19594 10870739 YP_004655753.1 CDS Runsl_2209 NC_015703.1 2542620 2543378 R PFAM: Shikimate dehydrogenase substrate binding domain; TIGRFAM: shikimate 5-dehydrogenase; InterPro IPR005181:IPR000601; KEGG: dfe:Dfer_4090 protein of unknown function DUF303 acetylesterase PFAM: Protein of unknown function DUF303, acetylesterase ; PKD; SPTR: uncharacterized protein; shikimate dehydrogenase complement(2542620..2543378) Runella slithyformis DSM 19594 10870740 YP_004655754.1 CDS Runsl_2210 NC_015703.1 2543378 2547205 R PFAM: Domain of unknown function (DUF303); COGs: COG0536 GTPase; HAMAP: GTPase obg; InterPro IPR014100:IPR005225:IPR006169:IPR002917; KEGG: sli:Slin_5095 GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related; SPTR: GTPase obg; TIGRFAM: GTP-binding protein Obg/CgtA; Small GTP-binding protein; hypothetical protein complement(2543378..2547205) Runella slithyformis DSM 19594 10870741 YP_004655755.1 CDS Runsl_2211 NC_015703.1 2547331 2548323 R PFAM: GTPase of unknown function; GTP1/OBG; TIGRFAM: Obg family GTPase CgtA; small GTP-binding protein domain; COGs: COG0563 Adenylate kinase and related kinase; HAMAP: Adenylate kinase; InterPro IPR006259:IPR000850; KEGG: lby:Lbys_3218 adenylate kinase; PFAM: Adenylate kinase; SPTR: Adenylate kinase; TIGRFAM: Adenylate kinase, subfamily; GTPase ObgE complement(2547331..2548323) Runella slithyformis DSM 19594 10870742 YP_004655756.1 CDS Runsl_2212 NC_015703.1 2548536 2549105 R PFAM: Adenylate kinase; TIGRFAM: adenylate kinases; KEGG: dfe:Dfer_4093 hypothetical protein; SPTR: uncharacterized protein; adenylate kinase complement(2548536..2549105) Runella slithyformis DSM 19594 10870743 YP_004655757.1 CDS Runsl_2213 NC_015703.1 2549326 2550195 R COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: dfe:Dfer_4094 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase; hypothetical protein complement(2549326..2550195) Runella slithyformis DSM 19594 10870744 YP_004655758.1 CDS Runsl_2214 NC_015703.1 2550357 2552147 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: sli:Slin_5387 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family; integral membrane sensor signal transduction histidine kinase 2550357..2552147 Runella slithyformis DSM 19594 10870745 YP_004655759.1 CDS Runsl_2215 NC_015703.1 2552166 2552876 D PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; InterPro IPR006342; KEGG: bmj:BMULJ_04341 SAM-dependent methyltransferase; SPTR: Methyltransferase FkbM; TIGRFAM: Methyltransferase FkbM; winged helix family two component transcriptional regulator 2552166..2552876 Runella slithyformis DSM 19594 10870746 YP_004655760.1 CDS Runsl_2216 NC_015703.1 2552878 2553705 R PFAM: Met-10+ like-protein; TIGRFAM: methyltransferase, FkbM family; KEGG: sli:Slin_6059 hypothetical protein; SPTR: uncharacterized protein; FkbM family methyltransferase complement(2552878..2553705) Runella slithyformis DSM 19594 10870747 YP_004655761.1 CDS Runsl_2217 NC_015703.1 2553763 2555220 R InterPro IPR004155:IPR000357:IPR010496; KEGG: dfe:Dfer_2976 protein of unknown function DUF1080; PFAM: Protein of unknown function DUF1080; HEAT; PBS lyase HEAT-like repeat; SPTR: uncharacterized protein; hypothetical protein complement(2553763..2555220) Runella slithyformis DSM 19594 10870748 YP_004655762.1 CDS Runsl_2218 NC_015703.1 2555326 2558745 R PFAM: Domain of Unknown Function (DUF1080); HEAT repeat; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: dfe:Dfer_2975 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; hypothetical protein complement(2555326..2558745) Runella slithyformis DSM 19594 10870749 YP_004655763.1 CDS Runsl_2219 NC_015703.1 2558789 2560063 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013342; KEGG: dfe:Dfer_3890 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; SPTR: Mandelate racemase/muconate lactonizing protein; oxidoreductase domain-containing protein complement(2558789..2560063) Runella slithyformis DSM 19594 10870750 YP_004655764.1 CDS Runsl_2220 NC_015703.1 2560265 2561275 R PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; KEGG: dfe:Dfer_3621 hypothetical protein; SPTR: uncharacterized protein; mandelate racemase complement(2560265..2561275) Runella slithyformis DSM 19594 10870751 YP_004655765.1 CDS Runsl_2221 NC_015703.1 2561343 2562035 R KEGG: dfe:Dfer_3620 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2561343..2562035) Runella slithyformis DSM 19594 10870752 YP_004655766.1 CDS Runsl_2222 NC_015703.1 2562062 2563039 R COGs: COG0061 sugar kinase; HAMAP: inorganic polyphosphate/ATP-NAD kinase; InterPro IPR002504; KEGG: sli:Slin_0658 ATP-NAD/AcoX kinase; PFAM: ATP-NAD/AcoX kinase; SPTR: Probable inorganic polyphosphate/ATP-NAD kinase; hypothetical protein complement(2562062..2563039) Runella slithyformis DSM 19594 10870753 YP_004655767.1 CDS Runsl_2223 NC_015703.1 2563125 2564000 R PFAM: ATP-NAD kinase; InterPro IPR000644; KEGG: dfe:Dfer_3892 CBS domain containing protein; PFAM: Cystathionine beta-synthase, core; SPTR: CBS domain containing protein; inorganic polyphosphate/ATP-NAD kinase complement(2563125..2564000) Runella slithyformis DSM 19594 10870754 YP_004655768.1 CDS Runsl_2224 NC_015703.1 2564062 2564730 R PFAM: CBS domain; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: dfe:Dfer_3868 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; hypothetical protein complement(2564062..2564730) Runella slithyformis DSM 19594 10870755 YP_004655769.1 CDS Runsl_2225 NC_015703.1 2564901 2566133 R PFAM: OmpA family; COGs: COG4974 Site-specific recombinase XerD; HAMAP: Tyrosine recombinase xerC; InterPro IPR004107:IPR002104; KEGG: sli:Slin_0098 integrase; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Tyrosine recombinase xerC 1; OmpA/MotB domain-containing protein complement(2564901..2566133) Runella slithyformis DSM 19594 10870756 YP_004655770.1 CDS Runsl_2226 NC_015703.1 2566306 2567181 R PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase; InterPro IPR010496; KEGG: sli:Slin_4651 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; tyrosine recombinase XerC complement(2566306..2567181) Runella slithyformis DSM 19594 10870757 YP_004655771.1 CDS Runsl_2227 NC_015703.1 2567300 2568049 R PFAM: Domain of Unknown Function (DUF1080); COGs: COG2152 glycosylase; InterPro IPR007184; KEGG: sli:Slin_3919 glycosidase PH1107-related protein; PFAM: Glycosidase, PH1107-related; SPTR: Glycosidase PH1107-related protein; hypothetical protein complement(2567300..2568049) Runella slithyformis DSM 19594 10870758 YP_004655772.1 CDS Runsl_2228 NC_015703.1 2568046 2569161 R PFAM: Domain of unknown function (DUF377); COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: sli:Slin_5156 ROK family protein; PFAM: ROK; PRIAM: Glucokinase; SPTR: ROK family protein; glycosidase-like protein complement(2568046..2569161) Runella slithyformis DSM 19594 10870759 YP_004655773.1 CDS Runsl_2229 NC_015703.1 2569321 2570229 R PFAM: ROK family; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: dfe:Dfer_3961 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; glucokinase complement(2569321..2570229) Runella slithyformis DSM 19594 10870760 YP_004655774.1 CDS Runsl_2230 NC_015703.1 2570315 2571025 R PFAM: short chain dehydrogenase; COGs: COG0344 membrane protein; HAMAP: Protein of unknown function DUF205; InterPro IPR020788:IPR003811; KEGG: dfe:Dfer_3740 acyl-phosphate glycerol-3-phosphate acyltransferase; PFAM: Protein of unknown function DUF205; SPTR: Glycerol-3-phosphate acyltransferase; TIGRFAM: Membrane protein YgiH; short-chain dehydrogenase/reductase SDR complement(2570315..2571025) Runella slithyformis DSM 19594 10870761 YP_004655775.1 CDS Runsl_2231 NC_015703.1 2571157 2571798 D PFAM: Domain of unknown function (DUF205); TIGRFAM: acyl-phosphate glycerol 3-phosphate acyltransferase; InterPro IPR002610; KEGG: dfe:Dfer_3557 rhomboid family protein; PFAM: Peptidase S54, rhomboid; SPTR: Rhomboid family protein; glycerol-3-phosphate acyltransferase 2571157..2571798 Runella slithyformis DSM 19594 10870762 YP_004655776.1 CDS Runsl_2232 NC_015703.1 2571924 2572550 D PFAM: Rhomboid family; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: dfe:Dfer_3397 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28; rhomboid family protein 2571924..2572550 Runella slithyformis DSM 19594 10870763 YP_004655777.1 CDS Runsl_2233 NC_015703.1 2572554 2574197 D PFAM: PA domain; Peptidase M28; COGs: COG2030 Acyl dehydratase; InterPro IPR002539; KEGG: sli:Slin_5640 enoyl-CoA hydratase; PFAM: MaoC-like dehydratase; PRIAM: Enoyl-CoA hydratase; SPTR: Enoyl-CoA hydratase; peptidase M28 2572554..2574197 Runella slithyformis DSM 19594 10870764 YP_004655778.1 CDS Runsl_2234 NC_015703.1 2574210 2574662 D PFAM: MaoC like domain; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_0401 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; enoyl-CoA hydratase 2574210..2574662 Runella slithyformis DSM 19594 10870765 YP_004655779.1 CDS Runsl_2235 NC_015703.1 2574778 2575512 D PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: sli:Slin_5641 butyryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Butyryl-CoA dehydrogenase; 3-oxoacyl-ACP reductase 2574778..2575512 Runella slithyformis DSM 19594 10870766 YP_004655780.1 CDS Runsl_2236 NC_015703.1 2575589 2576758 D PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; butyryl-CoA dehydrogenase 2575589..2576758 Runella slithyformis DSM 19594 10870767 YP_004655781.1 CDS Runsl_2237 NC_015703.1 2576800 2577153 R COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: dfe:Dfer_3823 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; hypothetical protein complement(2576800..2577153) Runella slithyformis DSM 19594 10870768 YP_004655782.1 CDS Runsl_2238 NC_015703.1 2577812 2578738 D PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: phe:Phep_0201 hypothetical protein; SPTR: Membrane or secreted protein; AraC family transcriptional regulator 2577812..2578738 Runella slithyformis DSM 19594 10870769 YP_004655783.1 CDS Runsl_2239 NC_015703.1 2578877 2579575 D COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase; InterPro IPR005863:IPR000713:IPR013221:IPR004101; KEGG: dfe:Dfer_4530 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a lanineligase; SPTR:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-al anineligase; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; hypothetical protein 2578877..2579575 Runella slithyformis DSM 19594 10870770 YP_004655784.1 CDS Runsl_2240 NC_015703.1 2579632 2580924 D PFAM: Mur ligase, glutamate ligase domain; Mur ligase, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; COGs: COG4289 conserved hypothetical protein; InterPro IPR016624; KEGG: bsa:Bacsa_1607 glycosyl hydrolase 88; PFAM: Uncharacterised conserved protein UCP014753; SPTR: uncharacterized protein; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase 2579632..2580924 Runella slithyformis DSM 19594 10870771 YP_004655785.1 CDS Runsl_2241 NC_015703.1 2580935 2582200 R PFAM: Uncharacterized protein conserved in bacteria (DUF2264); COGs: COG2706 3-carboxymuconate cyclase; InterPro IPR019405; KEGG: cpi:Cpin_0750 6-phosphogluconolactonase; PFAM: Domain of unknown function DUF2394; PRIAM: 6-phosphogluconolactonase; SPTR: 6-phosphogluconolactonase; hypothetical protein complement(2580935..2582200) Runella slithyformis DSM 19594 10870772 YP_004655786.1 CDS Runsl_2242 NC_015703.1 2582219 2583334 R PFAM: 3-carboxy-cis,cis-muconate lactonizing enzyme; InterPro IPR011644; KEGG: sli:Slin_6271 heme NO binding domain protein; PFAM: Haem NO binding; SPTR: Heme NO binding domain protein; 6-phosphogluconolactonase complement(2582219..2583334) Runella slithyformis DSM 19594 10870773 YP_004655787.1 CDS Runsl_2243 NC_015703.1 2583518 2584054 D PFAM: Heme NO binding; COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 001789:IPR013655:IPR013767:IPR008207; KEGG: sli:Slin_6270 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-3; PAS fold; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif; Signal transduction response regulator, receiver region; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; heme NO binding domain-containing protein 2583518..2584054 Runella slithyformis DSM 19594 10870774 YP_004655788.1 CDS Runsl_2244 NC_015703.1 2584056 2586917 D PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG3717 5-keto 4-deoxyuronate isomerase; HAMAP: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; InterPro IPR007045; KEGG: dfe:Dfer_2839 5-keto-4-deoxyuronate isomerase; PFAM: 5-keto 4-deoxyuronate isomerase; PRIAM: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; SPTR: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; multi-sensor hybrid histidine kinase 2584056..2586917 Runella slithyformis DSM 19594 10870775 YP_004655789.1 CDS Runsl_2245 NC_015703.1 2587004 2587834 R PFAM: KduI/IolB family; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: cpi:Cpin_6825 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 2-deoxy-D-gluconate 3-dehydrogenase; SPTR: Short-chain dehydrogenase/reductase SDR; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase complement(2587004..2587834) Runella slithyformis DSM 19594 10870776 YP_004655790.1 CDS Runsl_2246 NC_015703.1 2587876 2588637 R PFAM: short chain dehydrogenase; TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; 2-deoxy-D-gluconate 3-dehydrogenase complement(2587876..2588637) Runella slithyformis DSM 19594 10870777 YP_004655791.1 CDS Runsl_2247 NC_015703.1 2588829 2588924 D COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: dfe:Dfer_2837 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; hypothetical protein 2588829..2588924 Runella slithyformis DSM 19594 10870778 YP_004655792.1 CDS Runsl_2248 NC_015703.1 2588933 2589964 D PFAM: Bacterial regulatory proteins, lacI family; family; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: cpi:Cpin_1037 cell wall hydrolase/autolysin; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; SPTR: Cell wall hydrolase/autolysin; LacI family transcriptional regulator 2588933..2589964 Runella slithyformis DSM 19594 10870779 YP_004655793.1 CDS Runsl_2249 NC_015703.1 2589975 2591198 D PFAM: N-acetylmuramoyl-L-alanine amidase; Localisation of periplasmic protein complexes; KEGG: lby:Lbys_3570 hypothetical protein; SPTR: uncharacterized protein; cell wall hydrolase/autolysin 2589975..2591198 Runella slithyformis DSM 19594 10870780 YP_004655794.1 CDS Runsl_2250 NC_015703.1 2591243 2591905 D hypothetical protein 2591243..2591905 Runella slithyformis DSM 19594 10870781 YP_004655795.1 CDS Runsl_2251 NC_015703.1 2591966 2592205 R COGs: COG5434 Endopygalactorunase; InterPro IPR006626:IPR001087:IPR000743; KEGG: lby:Lbys_1641 glycoside hydrolase 28; PFAM: Glycoside hydrolase, family 28; Lipase, GDSL; PRIAM: Exo-poly-alpha-galacturonosidase; SPTR: Glycoside hydrolase 28; hypothetical protein complement(2591966..2592205) Runella slithyformis DSM 19594 10870782 YP_004655796.1 CDS Runsl_2252 NC_015703.1 2592364 2594709 D PFAM: Glycosyl hydrolases family 28; GDSL-like Lipase/Acylhydrolase; KEGG: sli:Slin_3865 hypothetical protein; SPTR: uncharacterized protein; Exo-poly-alpha-galacturonosidase 2592364..2594709 Runella slithyformis DSM 19594 10870783 YP_004655797.1 CDS Runsl_2253 NC_015703.1 2595170 2597818 R InterPro IPR013517; KEGG: fjo:Fjoh_5055 hypothetical protein; PFAM: FG-GAP; SPTR: Hypothetical lipoprotein; hypothetical protein complement(2595170..2597818) Runella slithyformis DSM 19594 10870784 YP_004655798.1 CDS Runsl_2254 NC_015703.1 2597836 2598546 R PFAM: FG-GAP repeat; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: chu:CHU_1932 outer membrane protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: Possible outer membrane protein; hypothetical protein complement(2597836..2598546) Runella slithyformis DSM 19594 10870785 YP_004655799.1 CDS Runsl_2255 NC_015703.1 2598570 2600192 R PFAM: OmpA family; KEGG: dfe:Dfer_3562 hypothetical protein; SPTR: uncharacterized protein; OmpA/MotB domain-containing protein complement(2598570..2600192) Runella slithyformis DSM 19594 10870786 YP_004655800.1 CDS Runsl_2256 NC_015703.1 2600223 2600660 R KEGG: cat:CA2559_05520 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2600223..2600660) Runella slithyformis DSM 19594 10870787 YP_004655801.1 CDS Runsl_2257 NC_015703.1 2600679 2601713 R hypothetical protein complement(2600679..2601713) Runella slithyformis DSM 19594 10870788 YP_004655802.1 CDS Runsl_2258 NC_015703.1 2601721 2602761 R KEGG: ppn:Palpr_1196 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2601721..2602761) Runella slithyformis DSM 19594 10870789 YP_004655803.1 CDS Runsl_2259 NC_015703.1 2603050 2604144 R COGs: COG3920 Signal transduction histidine kinase; InterPro IPR011495:IPR003594; KEGG: gfo:GFO_2643 two-component system sensor histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor region; ATP-binding region, ATPase-like; SPTR: Signal transduction histidine kinase; hypothetical protein complement(2603050..2604144) Runella slithyformis DSM 19594 10870790 YP_004655804.1 CDS Runsl_2260 NC_015703.1 2604304 2606088 D PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789; KEGG: dfe:Dfer_1630 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; signal transduction histidine kinase 2604304..2606088 Runella slithyformis DSM 19594 10870791 YP_004655805.1 CDS Runsl_2261 NC_015703.1 2606063 2606791 D PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090:IPR002655; KEGG: cao:Celal_2067 acyl-CoA oxidase; PFAM: Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase, C-terminal; PRIAM: Acyl-CoA oxidase; SPTR: Acyl-CoA oxidase; response regulator receiver protein 2606063..2606791 Runella slithyformis DSM 19594 10870792 YP_004655806.1 CDS Runsl_2262 NC_015703.1 2606907 2609189 R PFAM: Acyl-CoA oxidase; Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: sli:Slin_1486 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family; acyl-CoA oxidase complement(2606907..2609189) Runella slithyformis DSM 19594 10870793 YP_004655807.1 CDS Runsl_2263 NC_015703.1 2609298 2610023 R PFAM: GDSL-like Lipase/Acylhydrolase; InterPro IPR014968; KEGG: cyn:Cyan7425_3080 XisI protein; PFAM: XisI protein; SPTR: uncharacterized protein; G-D-S-L family lipolytic protein complement(2609298..2610023) Runella slithyformis DSM 19594 10870794 YP_004655808.1 CDS Runsl_2264 NC_015703.1 2610041 2610376 R PFAM: XisI protein; InterPro IPR014919; KEGG: mar:MAE_16020 FdxN element excision controlling factor protein; PFAM: XisH protein; SPTR: FdxN element excision controlling factor protein; XisI protein complement(2610041..2610376) Runella slithyformis DSM 19594 10870795 YP_004655809.1 CDS Runsl_2265 NC_015703.1 2610364 2610777 R PFAM: XisH protein; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_2514 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; manually curated; XisH protein complement(2610364..2610777) Runella slithyformis DSM 19594 10870796 YP_004655810.1 CDS Runsl_2266 NC_015703.1 2610857 2613313 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; KEGG: cao:Celal_2018 hypothetical protein; SPTR: Cytochrome c; TonB-dependent receptor complement(2610857..2613313) Runella slithyformis DSM 19594 10870797 YP_004655811.1 CDS Runsl_2267 NC_015703.1 2613417 2613929 R COGs: COG5520 O-Glycosyl hydrolase; InterPro IPR001139; KEGG: psn:Pedsa_3076 glucan endo-1,6-beta-glucosidase; PFAM: Glycoside hydrolase, family 30; PRIAM: Glucan endo-1,6-beta-glucosidase; SPTR: Glucan endo-1,6-beta-glucosidase; hypothetical protein complement(2613417..2613929) Runella slithyformis DSM 19594 10870798 YP_004655812.1 CDS Runsl_2268 NC_015703.1 2614290 2615669 D PFAM: O-Glycosyl hydrolase 30; KEGG: asa:ASA_0853 hypothetical protein; SPTR: uncharacterized protein; glucan endo-1,6-beta-glucosidase 2614290..2615669 Runella slithyformis DSM 19594 10870799 YP_004655813.1 CDS Runsl_2269 NC_015703.1 2615692 2616168 R COGs: COG3538 conserved hypothetical protein; InterPro IPR006311:IPR008313; KEGG: dfe:Dfer_4291 hypothetical protein; PFAM: Uncharacterised conserved protein UCP028846; SPTR: uncharacterized protein; hypothetical protein complement(2615692..2616168) Runella slithyformis DSM 19594 10870800 YP_004655814.1 CDS Runsl_2270 NC_015703.1 2616460 2617881 D PFAM: Protein of unknown function (DUF1237); COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933; KEGG: sli:Slin_1127 alpha-L-fucosidase; PFAM: Glycoside hydrolase, family 29; SMART: Glycoside hydrolase, family 29; SPTR: Alpha-L-fucosidase; hypothetical protein 2616460..2617881 Runella slithyformis DSM 19594 10870801 YP_004655815.1 CDS Runsl_2271 NC_015703.1 2617997 2619436 D PFAM: Alpha-L-fucosidase; COGs: COG1446 Asparaginase; InterPro IPR000246; KEGG: lby:Lbys_1666 asparaginase; PFAM: Peptidase T2, asparaginase 2; PRIAM:N(4)-(beta-N-acetylglucosaminyl)-L-asparagina se; SPTR: Asparaginase; glycoside hydrolase 2617997..2619436 Runella slithyformis DSM 19594 10870802 YP_004655816.1 CDS Runsl_2272 NC_015703.1 2619518 2620564 D PFAM: Asparaginase; COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933; KEGG: lby:Lbys_1665 glycoside hydrolase 29 (alpha-L-fucosidase); PFAM: Glycoside hydrolase, family 29; SMART: Glycoside hydrolase, family 29; SPTR: Glycoside hydrolase 29 (Alpha-L-fucosidase); N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase 2619518..2620564 Runella slithyformis DSM 19594 10870803 YP_004655817.1 CDS Runsl_2273 NC_015703.1 2620633 2622000 D PFAM: Alpha-L-fucosidase; COGs: COG1858 Cytochrome c peroxidase; InterPro IPR004852; KEGG: hoh:Hoch_3035 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; SPTR: Probable Cytochrome-c peroxidase; glycoside hydrolase 2620633..2622000 Runella slithyformis DSM 19594 10870804 YP_004655818.1 CDS Runsl_2274 NC_015703.1 2622053 2623225 R PFAM: Cytochrome c; Di-haem cytochrome c peroxidase; KEGG: sli:Slin_6343 hypothetical protein; SPTR: uncharacterized protein; Di-heme cytochrome c peroxidase complement(2622053..2623225) Runella slithyformis DSM 19594 10870805 YP_004655819.1 CDS Runsl_2275 NC_015703.1 2623398 2625542 D InterPro IPR001087; KEGG: sli:Slin_3977 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family; hypothetical protein 2623398..2625542 Runella slithyformis DSM 19594 10870806 YP_004655820.1 CDS Runsl_2276 NC_015703.1 2625618 2627387 D PFAM: GDSL-like Lipase/Acylhydrolase; COGs: COG3325 Chitinase; InterPro IPR011583:IPR001223; KEGG: lby:Lbys_2911 glycoside hydrolase 18; PFAM: Glycoside hydrolase, family 18, catalytic domain; SMART: Chitinase II; SPTR: Glycoside hydrolase 18; G-D-S-L family lipolytic protein 2625618..2627387 Runella slithyformis DSM 19594 10870807 YP_004655821.1 CDS Runsl_2277 NC_015703.1 2627411 2628373 D PFAM: Glycosyl hydrolases family 18; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: dfe:Dfer_2787 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; glycoside hydrolase 2627411..2628373 Runella slithyformis DSM 19594 10870808 YP_004655822.1 CDS Runsl_2278 NC_015703.1 2628969 2631185 D COGs: COG0679 permease; InterPro IPR004776; KEGG: bmd:BMD_1912 auxin efflux carrier (AEC) family transporter; PFAM: Auxin efflux carrier; SPTR: Transporter, auxin efflux carrier (AEC) family protein; radical SAM protein 2628969..2631185 Runella slithyformis DSM 19594 10870809 YP_004655823.1 CDS Runsl_2279 NC_015703.1 2631270 2632190 R PFAM: Membrane transport protein; InterPro IPR013096; KEGG: cpi:Cpin_7186 cupin; PFAM: Cupin 2, conserved barrel; SPTR: Cupin 2 conserved barrel domain protein; auxin efflux carrier family protein complement(2631270..2632190) Runella slithyformis DSM 19594 10870810 YP_004655824.1 CDS Runsl_2280 NC_015703.1 2632531 2632872 D PFAM: Cupin domain; COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: dfe:Dfer_2841 glycosyl hydrolase 88; PFAM: Glycosyl hydrolase, family 88; SPTR: Glycosyl hydrolase 88; cupin 2632531..2632872 Runella slithyformis DSM 19594 10870811 YP_004655825.1 CDS Runsl_2281 NC_015703.1 2632902 2634812 D PFAM: Glycosyl Hydrolase 88; COGs: COG0246 Mannitol-1-phosphate/altronate dehydrogenase; InterPro IPR013131:IPR013118; KEGG: sli:Slin_1247 mannitol dehydrogenase domain protein; PFAM: Mannitol dehydrogenase, C-terminal; Mannitol dehydrogenase, N-terminal; PRIAM: Tagaturonate reductase; SPTR: Mannitol dehydrogenase domain protein; glycoside hydrolase 2632902..2634812 Runella slithyformis DSM 19594 10870812 YP_004655826.1 CDS Runsl_2282 NC_015703.1 2635053 2636600 D PFAM: Mannitol dehydrogenase C-terminal domain; Mannitol dehydrogenase Rossmann domain; COGs: COG1904 Glucuronate isomerase; HAMAP: Uronate isomerase; InterPro IPR003766; KEGG: lby:Lbys_1618 D-glucuronate isomerase; PFAM: Uronate isomerase; PRIAM: Glucuronate isomerase; SPTR: Uronate isomerase; Tagaturonate reductase 2635053..2636600 Runella slithyformis DSM 19594 10870813 YP_004655827.1 CDS Runsl_2283 NC_015703.1 2636622 2638046 D PFAM: Glucuronate isomerase; COGs: COG0524 Sugar kinase ribokinase; InterPro IPR011611; KEGG: sli:Slin_1246 PfkB domain protein; PFAM: Carbohydrate/purine kinase; SPTR: PfkB domain protein; uronate isomerase 2636622..2638046 Runella slithyformis DSM 19594 10870814 YP_004655828.1 CDS Runsl_2284 NC_015703.1 2638100 2639137 D PFAM: pfkB family carbohydrate kinase; COGs: COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; InterPro IPR000887; KEGG: sli:Slin_1245 KDPG and KHG aldolase; PFAM: KDPG/KHG aldolase; SPTR: KDPG and KHG aldolase; TIGRFAM: KDPG/KHG aldolase; PfkB domain-containing protein 2638100..2639137 Runella slithyformis DSM 19594 10870815 YP_004655829.1 CDS Runsl_2285 NC_015703.1 2639157 2639828 D PFAM: KDPG and KHG aldolase; TIGRFAM: Entner-Doudoroff aldolase; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: phe:Phep_1023 major facilitator superfamily protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; 2-dehydro-3-deoxyphosphogluconate aldolase 2639157..2639828 Runella slithyformis DSM 19594 10870816 YP_004655830.1 CDS Runsl_2286 NC_015703.1 2639900 2641201 D PFAM: Major Facilitator Superfamily; KEGG: sli:Slin_0455 hypothetical protein; SPTR: uncharacterized protein; major facilitator superfamily protein 2639900..2641201 Runella slithyformis DSM 19594 10870817 YP_004655831.1 CDS Runsl_2287 NC_015703.1 2641210 2641641 D PFAM: Calcium/calmodulin dependent protein kinase II Association; COGs: COG0126 3-phosphoglycerate kinase; HAMAP: Phosphoglycerate kinase; InterPro IPR001576; KEGG: lby:Lbys_3021 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; PRIAM: Phosphoglycerate kinase; SPTR: Phosphoglycerate kinase; hypothetical protein 2641210..2641641 Runella slithyformis DSM 19594 10870818 YP_004655832.1 CDS Runsl_2288 NC_015703.1 2641839 2643026 D PFAM: Phosphoglycerate kinase; KEGG: dfe:Dfer_3393 hypothetical protein; SPTR: uncharacterized protein; phosphoglycerate kinase 2641839..2643026 Runella slithyformis DSM 19594 10870819 YP_004655833.1 CDS Runsl_2289 NC_015703.1 2643096 2643677 R COGs: COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); HAMAP: NAD(P)H-quinone oxidoreductase subunit 2; InterPro IPR001750; KEGG: dfe:Dfer_3394 proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit N 1; hypothetical protein complement(2643096..2643677) Runella slithyformis DSM 19594 10870820 YP_004655834.1 CDS Runsl_2290 NC_015703.1 2643780 2645234 D PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; COGs: COG3158 K+ transporter; HAMAP: Low affinity potassium transport system protein kup; InterPro IPR003855; KEGG: dfe:Dfer_3443 K potassium transporter; PFAM: K+ potassium transporter; SPTR: Probable potassium transport system protein kup 1; NAD(P)H-quinone oxidoreductase subunit 2 2643780..2645234 Runella slithyformis DSM 19594 10870821 YP_004655835.1 CDS Runsl_2291 NC_015703.1 2645475 2647424 D PFAM: K+ potassium transporter; COGs: COG3158 K+ transporter; HAMAP: Low affinity potassium transport system protein kup; InterPro IPR003855; KEGG: sli:Slin_2974 K potassium transporter; PFAM: K+ potassium transporter; SPTR: Probable potassium transport system protein kup 2; Low affinity potassium transport system protein kup 2645475..2647424 Runella slithyformis DSM 19594 10870822 YP_004655836.1 CDS Runsl_2292 NC_015703.1 2647440 2649395 D PFAM: K+ potassium transporter; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_4399 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: CDP-paratose 2-epimerase; SPTR: NAD-dependent epimerase/dehydratase; Low affinity potassium transport system protein kup 2647440..2649395 Runella slithyformis DSM 19594 10870823 YP_004655837.1 CDS Runsl_2293 NC_015703.1 2649404 2650465 D PFAM: NAD dependent epimerase/dehydratase; COGs: COG3717 5-keto 4-deoxyuronate isomerase; HAMAP: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; InterPro IPR007045; KEGG: bse:Bsel_0460 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; PFAM: 5-keto 4-deoxyuronate isomerase; PRIAM: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; SPTR: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; CDP-paratose 2-epimerase 2649404..2650465 Runella slithyformis DSM 19594 10870824 YP_004655838.1 CDS Runsl_2294 NC_015703.1 2650533 2651369 D PFAM: KduI/IolB family; InterPro IPR003489; KEGG: dfe:Dfer_3255 sigma 54 modulation protein/ribosomal protein S30EA; SPTR: sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 2650533..2651369 Runella slithyformis DSM 19594 10870825 YP_004655839.1 CDS Runsl_2295 NC_015703.1 2651557 2651934 D PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein; COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: sli:Slin_5309 amidohydrolase; PFAM: Amidohydrolase 1; SPTR: Amidohydrolase; ribosomal subunit interface protein 2651557..2651934 Runella slithyformis DSM 19594 10870826 YP_004655840.1 CDS Runsl_2296 NC_015703.1 2652069 2653688 D PFAM: Amidohydrolase; COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain; InterPro IPR004529:IPR004188:IPR002319; KEGG: dfe:Dfer_4769 phenylalanyl-tRNA synthetase, alpha subunit; PFAM: Phenylalanyl-tRNA synthetase alpha chain; Phenylalanyl-tRNA synthetase, class II, N-terminal; SPTR: Phenylalanyl-tRNA synthetase alpha chain; TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; amidohydrolase 2652069..2653688 Runella slithyformis DSM 19594 10870827 YP_004655841.1 CDS Runsl_2297 NC_015703.1 2654006 2655046 D PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; KEGG: dfe:Dfer_4561 hypothetical protein; SPTR: uncharacterized protein; phenylalanyl-tRNA synthetase subunit alpha 2654006..2655046 Runella slithyformis DSM 19594 10870828 YP_004655842.1 CDS Runsl_2298 NC_015703.1 2655241 2655957 R COGs: COG0404 Glycine cleavage system T protein (aminomethyltransferase); HAMAP: Aminomethyltransferase; InterPro IPR006223:IPR006222:IPR013977; KEGG: dfe:Dfer_4550 glycine cleavage system aminomethyltransferase T; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel; PRIAM: Aminomethyltransferase; SPTR: Aminomethyltransferase; TIGRFAM: Glycine cleavage system T protein; hypothetical protein complement(2655241..2655957) Runella slithyformis DSM 19594 10870829 YP_004655843.1 CDS Runsl_2299 NC_015703.1 2656122 2657222 D PFAM: Aminomethyltransferase folate-binding domain; Glycine cleavage T-protein C-terminal barrel domain; TIGRFAM: glycine cleavage system T protein; COGs: COG2045 Phosphosulfolactate phosphohydrolase; InterPro IPR005238; KEGG: dfe:Dfer_4549 2-phosphosulfolactate phosphatase; PFAM: 2-phosphosulpholactate phosphatase; SPTR: Probable 2-phosphosulfolactate phosphatase; glycine cleavage system protein T 2656122..2657222 Runella slithyformis DSM 19594 10870830 YP_004655844.1 CDS Runsl_2300 NC_015703.1 2657333 2658040 D PFAM: 2-phosphosulpholactate phosphatase; COGs: COG0107 Imidazoleglycerol-phosphate synthase; HAMAP: Imidazole glycerol phosphate synthase subunit hisF; InterPro IPR004651:IPR006062; KEGG: dfe:Dfer_4239 imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: Histidine biosynthesis; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR: Imidazole glycerol phosphate synthase subunit hisF; TIGRFAM: Histidine biosynthesis, HisF; 2-phosphosulfolactate phosphatase 2657333..2658040 Runella slithyformis DSM 19594 10870831 YP_004655845.1 CDS Runsl_2301 NC_015703.1 2658077 2658907 D PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: psn:Pedsa_2901 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; imidazole glycerol phosphate synthase subunit HisF 2658077..2658907 Runella slithyformis DSM 19594 10870832 YP_004655846.1 CDS Runsl_2302 NC_015703.1 2658904 2659629 R PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: phe:Phep_0216 histidine kinase internal subunit; PFAM: Signal transduction histidine kinase, internal region; SPTR: transmembrane protein; LytTR family two component transcriptional regulator complement(2658904..2659629) Runella slithyformis DSM 19594 10870833 YP_004655847.1 CDS Runsl_2303 NC_015703.1 2659626 2660756 R PFAM: Histidine kinase; COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: sli:Slin_0366 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YceI family protein; signal transduction histidine kinase complement(2659626..2660756) Runella slithyformis DSM 19594 10870834 YP_004655848.1 CDS Runsl_2304 NC_015703.1 2660959 2661525 D PFAM: YceI-like domain; KEGG: dfe:Dfer_4741 beta-lactamase domain protein; SPTR: Beta-lactamase domain protein; hypothetical protein 2660959..2661525 Runella slithyformis DSM 19594 10870835 YP_004655849.1 CDS Runsl_2305 NC_015703.1 2661585 2662430 R PFAM: Metallo-beta-lactamase superfamily; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: syn:sll0740 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: Sll0740 protein; beta-lactamase domain-containing protein complement(2661585..2662430) Runella slithyformis DSM 19594 10870836 YP_004655850.1 CDS Runsl_2306 NC_015703.1 2662526 2663128 D PFAM: Protein of unknown function (DUF820); COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: lby:Lbys_1108 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family; hypothetical protein 2662526..2663128 Runella slithyformis DSM 19594 10870837 YP_004655851.1 CDS Runsl_2307 NC_015703.1 2663128 2663829 D PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0339 Zn-dependent oligopeptidase; InterPro IPR001567; KEGG: sli:Slin_1858 oligopeptidase A; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; PRIAM: Peptidyl-dipeptidase Dcp; SPTR: Oligopeptidase A; winged helix family two component transcriptional regulator 2663128..2663829 Runella slithyformis DSM 19594 10870838 YP_004655852.1 CDS Runsl_2308 NC_015703.1 2663930 2666038 D PFAM: Peptidase M3; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: cyn:Cyan7425_3410 type 11 methyltransferase; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; peptidyl-dipeptidase Dcp 2663930..2666038 Runella slithyformis DSM 19594 10870839 YP_004655853.1 CDS Runsl_2309 NC_015703.1 2666103 2666849 R PFAM: Methyltransferase domain; Prodigal; manually curated; type 11 methyltransferase complement(2666103..2666849) Runella slithyformis DSM 19594 10870840 YP_004655854.1 CDS Runsl_2311 NC_015703.1 2667496 2667720 D hypothetical protein 2667496..2667720 Runella slithyformis DSM 19594 10870842 YP_004655855.1 CDS Runsl_2312 NC_015703.1 2667740 2668213 R COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: pdi:BDI_2642 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: Sigma-70 region 2 subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein complement(2667740..2668213) Runella slithyformis DSM 19594 10870843 YP_004655856.1 CDS Runsl_2313 NC_015703.1 2668220 2668786 R PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: lby:Lbys_2521 membrane protein; SPTR: uncharacterized protein; ECF subfamily RNA polymerase sigma-24 subunit complement(2668220..2668786) Runella slithyformis DSM 19594 10870844 YP_004655857.1 CDS Runsl_2314 NC_015703.1 2668933 2669277 D COGs: COG0366 Glycosidase; InterPro IPR006589:IPR006047; KEGG: sli:Slin_4658 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; SPTR: Alpha amylase catalytic region; hypothetical protein 2668933..2669277 Runella slithyformis DSM 19594 10870845 YP_004655858.1 CDS Runsl_2315 NC_015703.1 2669328 2671286 R PFAM: Alpha amylase, catalytic domain; Domain of unknown function (DUF3416); InterPro IPR001387; KEGG: sli:Slin_1142 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; alpha amylase complement(2669328..2671286) Runella slithyformis DSM 19594 10870846 YP_004655859.1 CDS Runsl_2316 NC_015703.1 2671373 2671744 R PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein complement(2671373..2671744) Runella slithyformis DSM 19594 10870847 YP_004655860.1 CDS Runsl_2317 NC_015703.1 2671816 2672049 R COGs: COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); HAMAP: NAD(P)H-quinone oxidoreductase subunit 2; InterPro IPR010096:IPR001750; KEGG: sli:Slin_5946 proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit N 1; TIGRFAM: NADH-quinone oxidoreductase, chain N; hypothetical protein complement(2671816..2672049) Runella slithyformis DSM 19594 10870848 YP_004655861.1 CDS Runsl_2318 NC_015703.1 2672182 2673576 R PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); InterPro IPR010227:IPR001750; KEGG: dfe:Dfer_3897 proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: Proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: NADH-quinone oxidoreductase, chain M; NAD(P)H-quinone oxidoreductase subunit 2 complement(2672182..2673576) Runella slithyformis DSM 19594 10870849 YP_004655862.1 CDS Runsl_2319 NC_015703.1 2673681 2675135 R PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR003945:IPR001516:IPR001750; KEGG: dfe:Dfer_3898 proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; PRIAM: NADH dehydrogenase (quinone); SPTR: Proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; proton-translocating NADH-quinone oxidoreductase subunit M complement(2673681..2675135) Runella slithyformis DSM 19594 10870850 YP_004655863.1 CDS Runsl_2320 NC_015703.1 2675150 2677060 R PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5 C-terminus; NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; COGs: COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); HAMAP: NAD(P)H-quinone oxidoreductase subunit 4L; InterPro IPR001133; KEGG: dfe:Dfer_3899 NADH-ubiquinone oxidoreductase chain 4L; PFAM: NADH:ubiquinone/quinone oxidoreductase, chain 4L; SPTR: NADH-quinone oxidoreductase subunit K 1; proton-translocating NADH-quinone oxidoreductase subunit L complement(2675150..2677060) Runella slithyformis DSM 19594 10870851 YP_004655864.1 CDS Runsl_2321 NC_015703.1 2677126 2677470 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; COGs: COG0728 membrane protein virulence factor; InterPro IPR004268; KEGG: fnu:FN0709 virulence factor MviN; PFAM: Flagellin assembly, membrane protein MviN; SPTR: Virulence factor mviN; NAD(P)H-quinone oxidoreductase subunit 4L complement(2677126..2677470) Runella slithyformis DSM 19594 10870852 YP_004655865.1 CDS Runsl_2322 NC_015703.1 2677791 2679332 R PFAM: MviN-like protein; KEGG: dfe:Dfer_5102 hypothetical protein; SPTR: uncharacterized protein; virulence factor MVIN family protein complement(2677791..2679332) Runella slithyformis DSM 19594 10870853 YP_004655866.1 CDS Runsl_2323 NC_015703.1 2679356 2681020 R hypothetical protein complement(2679356..2681020) Runella slithyformis DSM 19594 10870854 YP_004655867.1 CDS Runsl_2324 NC_015703.1 2681021 2681992 R COGs: COG1778 Low specificity phosphatase (HAD superfamily); InterPro IPR010023:IPR006549:IPR005834; KEGG: ppn:Palpr_1685 2-dehydrO-3-deoxyphosphooctonate aldolase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: Phosphatase KdsC; HAD-superfamily hydrolase, subfamily IIIA; hypothetical protein complement(2681021..2681992) Runella slithyformis DSM 19594 10870855 YP_004655868.1 CDS Runsl_2325 NC_015703.1 2681979 2682476 R PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; HAD-superfamily hydrolase, subfamily IIIA; KEGG: dfe:Dfer_5102 hypothetical protein; SPTR: uncharacterized protein; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(2681979..2682476) Runella slithyformis DSM 19594 10870856 YP_004655869.1 CDS Runsl_2326 NC_015703.1 2682508 2684172 R COGs: COG1083 CMP-N-acetylneuraminic acid synthetase; InterPro IPR003329; KEGG: atm:ANT_06460 N-acylneuraminate cytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase; PRIAM: N-acylneuraminate cytidylyltransferase; SPTR: N-acylneuraminate cytidylyltransferase; hypothetical protein complement(2682508..2684172) Runella slithyformis DSM 19594 10870857 YP_004655870.1 CDS Runsl_2327 NC_015703.1 2684186 2684938 R PFAM: Cytidylyltransferase; COGs: COG2089 Sialic acid synthase; InterPro IPR013132; KEGG: cat:CA2559_07305 N-acetylneuraminic acid phosphate synthase; PFAM: N-acetylneuraminic acid synthase, N-terminal; PRIAM: N-acetylneuraminate synthase; SPTR: N-acetylneuraminic acid phosphate synthase; N-acylneuraminate cytidylyltransferase complement(2684186..2684938) Runella slithyformis DSM 19594 10870858 YP_004655871.1 CDS Runsl_2328 NC_015703.1 2684959 2685852 R PFAM: NeuB family; COGs: COG0276 Protoheme ferro-lyase (ferrochelatase); HAMAP: Ferrochelatase; InterPro IPR001015; KEGG: sli:Slin_0649 ferrochelatase; PFAM: Ferrochelatase; PRIAM: Ferrochelatase; SPTR: Ferrochelatase; TIGRFAM: Ferrochelatase; N-acetylneuraminate synthase complement(2684959..2685852) Runella slithyformis DSM 19594 10870859 YP_004655872.1 CDS Runsl_2329 NC_015703.1 2686196 2687257 D PFAM: Ferrochelatase; TIGRFAM: ferrochelatase; COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); HAMAP: Glutamyl-tRNA(Gln) amidotransferase, B subunit; InterPro IPR004413:IPR006075:IPR006107:IPR018027; KEGG: dfe:Dfer_3611 aspartyl/glutamyl-tRNA amidotransferase subunit B; PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, central region; Asn/Gln amidotransferase; SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit; ferrochelatase 2686196..2687257 Runella slithyformis DSM 19594 10870860 YP_004655873.1 CDS Runsl_2330 NC_015703.1 2687347 2688834 R PFAM: GatB/GatE catalytic domain; GatB domain; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(2687347..2688834) Runella slithyformis DSM 19594 10870861 YP_004655874.1 CDS Runsl_2331 NC_015703.1 2688932 2689087 R COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: sli:Slin_5112 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase domain protein; hypothetical protein complement(2688932..2689087) Runella slithyformis DSM 19594 10870862 YP_004655875.1 CDS Runsl_2332 NC_015703.1 2689213 2691024 D PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; KEGG: sli:Slin_4550 TonB-dependent receptor plug; SPTR: TonB-dependent receptor plug; butyryl-CoA dehydrogenase 2689213..2691024 Runella slithyformis DSM 19594 10870863 YP_004655876.1 CDS Runsl_2333 NC_015703.1 2691055 2692659 R COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; InterPro IPR004607:IPR002376; KEGG: sli:Slin_4818 phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal; PRIAM: Phosphoribosylglycinamide formyltransferase; SPTR: Phosphoribosylglycinamide formyltransferase; TIGRFAM: Phosphoribosylglycinamide formyltransferase; hypothetical protein complement(2691055..2692659) Runella slithyformis DSM 19594 10870864 YP_004655877.1 CDS Runsl_2334 NC_015703.1 2692708 2693289 R PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; KEGG: sli:Slin_5553 hypothetical protein; SPTR: uncharacterized protein; phosphoribosylglycinamide formyltransferase complement(2692708..2693289) Runella slithyformis DSM 19594 10870865 YP_004655878.1 CDS Runsl_2335 NC_015703.1 2693463 2694647 D hypothetical protein 2693463..2694647 Runella slithyformis DSM 19594 10870866 YP_004655879.1 CDS Runsl_2336 NC_015703.1 2694649 2694855 R COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR000073; KEGG: mma:MM_3198 hypothetical protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: uncharacterized protein; hypothetical protein complement(2694649..2694855) Runella slithyformis DSM 19594 10870867 YP_004655880.1 CDS Runsl_2337 NC_015703.1 2694881 2696248 D PFAM: X-Pro dipeptidyl-peptidase (S15 family); COGs: COG1280 threonine efflux protein; InterPro IPR001123; KEGG: dfe:Dfer_0472 lysine exporter protein (LysE/YggA); PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: Lysine exporter protein (LYSE/YGGA); alpha/beta hydrolase 2694881..2696248 Runella slithyformis DSM 19594 10870868 YP_004655881.1 CDS Runsl_2338 NC_015703.1 2696251 2696877 R PFAM: LysE type translocator; InterPro IPR000086; KEGG: dfe:Dfer_0471 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; lysine exporter protein LysE/YggA complement(2696251..2696877) Runella slithyformis DSM 19594 10870869 YP_004655882.1 CDS Runsl_2339 NC_015703.1 2696935 2697492 R PFAM: NUDIX domain; COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: sli:Slin_1661 cation diffusion facilitator family transporter; PFAM: Cation efflux protein; SPTR: Cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; NUDIX hydrolase complement(2696935..2697492) Runella slithyformis DSM 19594 10870870 YP_004655883.1 CDS Runsl_2340 NC_015703.1 2697594 2698622 D PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter; COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; InterPro IPR000583; KEGG: sli:Slin_5971 amidophosphoribosyltransferase; PFAM: Glutamine amidotransferase, class-II; PRIAM: Amidophosphoribosyltransferase; SPTR: Amidophosphoribosyltransferase; cation diffusion facilitator family transporter 2697594..2698622 Runella slithyformis DSM 19594 10870871 YP_004655884.1 CDS Runsl_2341 NC_015703.1 2698785 2700692 D PFAM: Glutamine amidotransferases class-II; Prodigal; manually curated; amidophosphoribosyltransferase 2698785..2700692 Runella slithyformis DSM 19594 10870872 YP_004655885.1 CDS Runsl_2343 NC_015703.1 2702232 2702606 R KEGG: sli:Slin_3426 hypothetical protein; SPTR: PKD domain protein; hypothetical protein complement(2702232..2702606) Runella slithyformis DSM 19594 10870874 YP_004655886.1 CDS Runsl_2344 NC_015703.1 2702712 2704115 R hypothetical protein complement(2702712..2704115) Runella slithyformis DSM 19594 10870875 YP_004655887.1 CDS Runsl_2345 NC_015703.1 2704082 2704609 R KEGG: lby:Lbys_0531 peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: Peptidase S8 and S53 subtilisin kexin sedolisin; hypothetical protein complement(2704082..2704609) Runella slithyformis DSM 19594 10870876 YP_004655888.1 CDS Runsl_2346 NC_015703.1 2704645 2704932 R peptidase S8 and S53 subtilisin kexin sedolisin complement(2704645..2704932) Runella slithyformis DSM 19594 10870877 YP_004655889.1 CDS Runsl_2347 NC_015703.1 2704880 2705905 R KEGG: rbi:RB2501_15219 DNA-binding protein; hypothetical protein complement(2704880..2705905) Runella slithyformis DSM 19594 10870878 YP_004655890.1 CDS Runsl_2348 NC_015703.1 2706055 2706375 R COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR006311:IPR012307; KEGG: sli:Slin_4026 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; hypothetical protein complement(2706055..2706375) Runella slithyformis DSM 19594 10870879 YP_004655891.1 CDS Runsl_2349 NC_015703.1 2706555 2707478 D PFAM: Xylose isomerase-like TIM barrel; KEGG: dfe:Dfer_5546 hypothetical protein; SPTR: uncharacterized protein; xylose isomerase domain-containing protein 2706555..2707478 Runella slithyformis DSM 19594 10870880 YP_004655892.1 CDS Runsl_2350 NC_015703.1 2707481 2707909 R COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: phe:Phep_0589 histidine kinase internal subunit; PFAM: Signal transduction histidine kinase, internal region; SPTR: Histidine kinase internal region; hypothetical protein complement(2707481..2707909) Runella slithyformis DSM 19594 10870881 YP_004655893.1 CDS Runsl_2351 NC_015703.1 2708146 2709714 D PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: phe:Phep_0588 response regulator receiver; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two-component response regulator; signal transduction histidine kinase 2708146..2709714 Runella slithyformis DSM 19594 10870882 YP_004655894.1 CDS Runsl_2352 NC_015703.1 2709758 2710495 D PFAM: Response regulator receiver domain; LytTr DNA-binding domain; InterPro IPR003838; KEGG: zpr:ZPR_4635 transporter permease; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: transporter permease; LytTR family two component transcriptional regulator 2709758..2710495 Runella slithyformis DSM 19594 10870883 YP_004655895.1 CDS Runsl_2353 NC_015703.1 2710516 2713191 R PFAM: Predicted permease; InterPro IPR005149; KEGG: sli:Slin_0940 PadR family transcriptional regulator; PFAM: Transcriptional regulator PadR N-terminal-like; SPTR: Transcriptional regulator, PadR-like family; hypothetical protein complement(2710516..2713191) Runella slithyformis DSM 19594 10870884 YP_004655896.1 CDS Runsl_2354 NC_015703.1 2713188 2713700 R PFAM: Transcriptional regulator PadR-like family; InterPro IPR011701; KEGG: sli:Slin_3632 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; PadR family transcriptional regulator complement(2713188..2713700) Runella slithyformis DSM 19594 10870885 YP_004655897.1 CDS Runsl_2355 NC_015703.1 2713920 2715212 D PFAM: Major Facilitator Superfamily; InterPro IPR011701; KEGG: sli:Slin_3633 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; major facilitator superfamily protein 2713920..2715212 Runella slithyformis DSM 19594 10870886 YP_004655898.1 CDS Runsl_2356 NC_015703.1 2715337 2716548 D PFAM: Major Facilitator Superfamily; KEGG: sli:Slin_5605 hypothetical protein; SPTR: uncharacterized protein; major facilitator superfamily protein 2715337..2716548 Runella slithyformis DSM 19594 10870887 YP_004655899.1 CDS Runsl_2357 NC_015703.1 2716677 2717750 R KEGG: sli:Slin_5604 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2716677..2717750) Runella slithyformis DSM 19594 10870888 YP_004655900.1 CDS Runsl_2358 NC_015703.1 2717728 2718396 R COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_5603 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; hypothetical protein complement(2717728..2718396) Runella slithyformis DSM 19594 10870889 YP_004655901.1 CDS Runsl_2359 NC_015703.1 2718505 2719071 R PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR004488:IPR002523; KEGG: dfe:Dfer_3288 magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like; SPTR: Magnesium and cobalt transport protein CorA; TIGRFAM: Magnesium/cobalt transport protein CorA; ECF subfamily RNA polymerase sigma-24 subunit complement(2718505..2719071) Runella slithyformis DSM 19594 10870890 YP_004655902.1 CDS Runsl_2360 NC_015703.1 2719252 2720196 D PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA); InterPro IPR005632; KEGG: dfe:Dfer_4390 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); magnesium and cobalt transport protein CorA 2719252..2720196 Runella slithyformis DSM 19594 10870891 YP_004655903.1 CDS Runsl_2361 NC_015703.1 2720280 2720945 R PFAM: Outer membrane protein (OmpH-like); COGs: COG2825 Outer membrane protein; InterPro IPR005632; KEGG: dfe:Dfer_4389 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp complement(2720280..2720945) Runella slithyformis DSM 19594 10870892 YP_004655904.1 CDS Runsl_2362 NC_015703.1 2720952 2721569 R PFAM: Outer membrane protein (OmpH-like); COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR016474:IPR010827:IPR000184; KEGG: dfe:Dfer_4388 outer membrane protein assembly complex, YaeT protein; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Outer membrane protein assembly complex, YaeT protein; TIGRFAM: Outer membrane assembly protein, YaeT; outer membrane chaperone Skp complement(2720952..2721569) Runella slithyformis DSM 19594 10870893 YP_004655905.1 CDS Runsl_2363 NC_015703.1 2721638 2724283 R PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein; COGs: COG0020 Undecaprenyl pyrophosphate synthase; HAMAP: Undecaprenyl pyrophosphate synthase; InterPro IPR001441; KEGG: dfe:Dfer_4387 undecaprenyl diphosphate synthase; PFAM:Di-trans-poly-cis-decaprenylcistransferase-lik e; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; SPTR: Undecaprenyl diphosphate synthase; TIGRFAM:Di-trans-poly-cis-decaprenylcistransferase- like; outer membrane protein assembly complex, YaeT protein complement(2721638..2724283) Runella slithyformis DSM 19594 10870894 YP_004655906.1 CDS Runsl_2364 NC_015703.1 2724439 2725188 R PFAM: undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: sli:Slin_6251 MATE efflux family protein; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; UDP pyrophosphate synthase complement(2724439..2725188) Runella slithyformis DSM 19594 10870895 YP_004655907.1 CDS Runsl_2365 NC_015703.1 2725342 2726727 R PFAM: MatE; TIGRFAM: efflux protein, MATE family; COGs: COG2319 FOG: WD40 repeat; InterPro IPR001680:IPR019781; KEGG: sli:Slin_5836 hypothetical protein; PFAM: WD40 repeat, subgroup; SMART: WD40 repeat; SPTR: WD40 repeat, subgroup; MATE efflux family protein complement(2725342..2726727) Runella slithyformis DSM 19594 10870896 YP_004655908.1 CDS Runsl_2366 NC_015703.1 2726782 2727696 R PFAM: WD domain, G-beta repeat; InterPro IPR008278; KEGG: dfe:Dfer_2892 4'-phosphopantetheinyl transferase; PFAM: 4'-phosphopantetheinyl transferase; SPTR: 4'-phosphopantetheinyl transferase; hypothetical protein complement(2726782..2727696) Runella slithyformis DSM 19594 10870897 YP_004655909.1 CDS Runsl_2367 NC_015703.1 2727794 2728429 D PFAM: 4'-phosphopantetheinyl transferase superfamily; COGs: COG2912 conserved hypothetical protein; KEGG: sli:Slin_5838 hypothetical protein; SPTR: uncharacterized protein; 4'-phosphopantetheinyl transferase 2727794..2728429 Runella slithyformis DSM 19594 10870898 YP_004655910.1 CDS Runsl_2368 NC_015703.1 2728436 2729341 R COGs: COG1087 UDP-glucose 4-epimerase; InterPro IPR005886:IPR001509; KEGG: dfe:Dfer_2894 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucose 4-epimerase; SPTR: UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; hypothetical protein complement(2728436..2729341) Runella slithyformis DSM 19594 10870899 YP_004655911.1 CDS Runsl_2369 NC_015703.1 2729378 2730400 D PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: UDP-glucose-4-epimerase; COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR005888:IPR001509; KEGG: lby:Lbys_1313 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: dTDP-glucose 4,6-dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; UDP-glucose 4-epimerase 2729378..2730400 Runella slithyformis DSM 19594 10870900 YP_004655912.1 CDS Runsl_2370 NC_015703.1 2730441 2731496 D PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; InterPro IPR001434:IPR008454; KEGG: hau:Haur_1649 Cna B domain-containing protein; PFAM: Collagen-binding surface protein Cna-like, B region; Protein of unknown function DUF11; SPTR: Cna B domain protein; TIGRFAM: Protein of unknown function DUF11; dTDP-glucose 4,6-dehydratase 2730441..2731496 Runella slithyformis DSM 19594 10870901 YP_004655913.1 CDS Runsl_2371 NC_015703.1 2731571 2735413 R PFAM: Domain of unknown function DUF11; Cna protein B-type domain; TIGRFAM: conserved repeat domain; hypothetical protein complement(2731571..2735413) Runella slithyformis DSM 19594 10870902 YP_004655914.1 CDS Runsl_2372 NC_015703.1 2735785 2735913 R COGs: COG1560 Lauroyl/myristoyl acyltransferase; KEGG: sli:Slin_5978 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2735785..2735913) Runella slithyformis DSM 19594 10870903 YP_004655915.1 CDS Runsl_2373 NC_015703.1 2736356 2737465 R PFAM: Bacterial lipid A biosynthesis acyltransferase; hypothetical protein complement(2736356..2737465) Runella slithyformis DSM 19594 10870904 YP_004655916.1 CDS Runsl_2374 NC_015703.1 2737476 2737652 R COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: sli:Slin_5976 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: Response regulator receiver protein; hypothetical protein complement(2737476..2737652) Runella slithyformis DSM 19594 10870905 YP_004655917.1 CDS Runsl_2375 NC_015703.1 2737907 2738893 D PFAM: LytTr DNA-binding domain; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792; KEGG: sli:Slin_5975 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: Two component transcriptional regulator, LuxR family; response regulator receiver protein 2737907..2738893 Runella slithyformis DSM 19594 10870906 YP_004655918.1 CDS Runsl_2376 NC_015703.1 2738904 2739584 R PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; COGs: COG0105 Nucleoside diphosphate kinase; HAMAP: Nucleoside diphosphate kinase; InterPro IPR001564; KEGG: sli:Slin_6029 nucleoside-diphosphate kinase; PFAM: Nucleoside diphosphate kinase, core; PRIAM: Nucleoside-diphosphate kinase; SMART: Nucleoside diphosphate kinase, core; SPTR: Nucleoside-diphosphate kinase; LuxR family transcriptional regulator complement(2738904..2739584) Runella slithyformis DSM 19594 10870907 YP_004655919.1 CDS Runsl_2377 NC_015703.1 2739778 2740197 R PFAM: Nucleoside diphosphate kinase; COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667:IPR003156; KEGG: dfe:Dfer_4381 phosphoesterase RecJ domain protein; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; SPTR: Phosphoesterase RecJ domain protein; nucleoside diphosphate kinase complement(2739778..2740197) Runella slithyformis DSM 19594 10870908 YP_004655920.1 CDS Runsl_2378 NC_015703.1 2740392 2741420 D PFAM: DHH family; DHHA1 domain; COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: sli:Slin_6027 peptidylprolyl isomerase FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; PRIAM: Peptidylprolyl isomerase; SPTR: Peptidyl-prolyl cis-trans isomerase; phosphoesterase RecJ domain-containing protein 2740392..2741420 Runella slithyformis DSM 19594 10870909 YP_004655921.1 CDS Runsl_2379 NC_015703.1 2741517 2742398 D PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: sli:Slin_4431 peptidylprolyl isomerase FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; peptidyl-prolyl isomerase 2741517..2742398 Runella slithyformis DSM 19594 10870910 YP_004655922.1 CDS Runsl_2380 NC_015703.1 2742515 2743450 D PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; COGs: COG0127 Xanthosine triphosphate pyrophosphatase; HAMAP: Nucleoside-triphosphatase rdgB; InterPro IPR002637; KEGG: sli:Slin_6026 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; PFAM: Ham1-like protein; PRIAM: Nucleoside-triphosphatase; SPTR: Nucleoside-triphosphatase; TIGRFAM: Ham1-like protein; FKBP-type peptidylprolyl isomerase 2742515..2743450 Runella slithyformis DSM 19594 10870911 YP_004655923.1 CDS Runsl_2381 NC_015703.1 2743504 2744082 D PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; COGs: COG3975 protease with the C-terminal PDZ domain; InterPro IPR007963; KEGG: dfe:Dfer_4157 peptidase M61 domain protein; PFAM: Peptidase M61; SPTR: Peptidase M61 domain protein; nucleoside-triphosphatase rdgB 2743504..2744082 Runella slithyformis DSM 19594 10870912 YP_004655924.1 CDS Runsl_2382 NC_015703.1 2744521 2745987 D PFAM: M61 glycyl aminopeptidase; InterPro IPR019933:IPR007793; KEGG: sli:Slin_5835 DivIVA domain protein; PFAM: DivIVA; SPTR: DivIVA domain protein; TIGRFAM: DivIVA domain; peptidase M61 domain-containing protein 2744521..2745987 Runella slithyformis DSM 19594 10870913 YP_004655925.1 CDS Runsl_2383 NC_015703.1 2746062 2746904 D PFAM: DivIVA protein; TIGRFAM: DivIVA domain; COGs: COG1539 Dihydroneopterin aldolase; InterPro IPR006157:IPR006156; KEGG: dfe:Dfer_2889 dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; SPTR: Dihydroneopterin aldolase; TIGRFAM: Dihydroneopterin aldolase subgroup; Dihydroneopterin aldolase; DivIVA domain-containing protein 2746062..2746904 Runella slithyformis DSM 19594 10870914 YP_004655926.1 CDS Runsl_2384 NC_015703.1 2746929 2747279 D PFAM: Dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; FolB domain; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: lby:Lbys_0664 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; dihydroneopterin aldolase 2746929..2747279 Runella slithyformis DSM 19594 10870915 YP_004655927.1 CDS Runsl_2385 NC_015703.1 2747438 2748904 R PFAM: Oxidoreductase, C-terminal alpha/beta domain; Oxidoreductase, NAD-binding Rossmann fold; COGs: COG2173 D-alanyl-D-alanine dipeptidase; InterPro IPR000755; KEGG: sli:Slin_4461 peptidase M15D VanX D-ala-D-ala dipeptidase; PFAM: Peptidase M15D, vanX D-ala-D-ala dipeptidase; SPTR: Peptidase M15D vanX D-ala-D-ala dipeptidase; oxidoreductase domain-containing protein complement(2747438..2748904) Runella slithyformis DSM 19594 10870916 YP_004655928.1 CDS Runsl_2386 NC_015703.1 2749144 2749812 D PFAM: D-ala-D-ala dipeptidase; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827; KEGG: dfe:Dfer_3223 surface antigen variable number repeat protein; PFAM: Surface antigen variable number; SPTR: Surface antigen variable number repeat protein; peptidase M15D vanX D-ala-D-ala dipeptidase 2749144..2749812 Runella slithyformis DSM 19594 10870917 YP_004655929.1 CDS Runsl_2387 NC_015703.1 2749816 2751258 D PFAM: Surface antigen variable number repeat; Surface antigen; KEGG: dfe:Dfer_3224 hypothetical protein; SPTR: uncharacterized protein; surface antigen variable number repeat-containing protein 2749816..2751258 Runella slithyformis DSM 19594 10870918 YP_004655930.1 CDS Runsl_2388 NC_015703.1 2751563 2752162 D COGs: COG1251 NAD(P)H-nitrite reductase; InterPro IPR013027; KEGG: zpr:ZPR_4195 nitrite reductase (NAD(P)H) large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Rubredoxin--NAD(+) reductase; SPTR: Pyridine nucleotide-disulphide oxidoreductase domain protein; hypothetical protein 2751563..2752162 Runella slithyformis DSM 19594 10870919 YP_004655931.1 CDS Runsl_2389 NC_015703.1 2752214 2753572 D PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814; KEGG: dfe:Dfer_4419 aminotransferase class-III; PFAM: Aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: Aminotransferase class-III; rubredoxin--NAD(+) reductase 2752214..2753572 Runella slithyformis DSM 19594 10870920 YP_004655932.1 CDS Runsl_2390 NC_015703.1 2753730 2754863 R PFAM: Aminotransferase class-III; COGs: COG1524 Uncharacterized protein of the AP superfamily; InterPro IPR002591; KEGG: dfe:Dfer_2886 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase; acetylornithine transaminase complement(2753730..2754863) Runella slithyformis DSM 19594 10870921 YP_004655933.1 CDS Runsl_2391 NC_015703.1 2755535 2756917 R PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase; KEGG: dfe:Dfer_2885 hypothetical protein; SPTR: uncharacterized protein; type I phosphodiesterase/nucleotide pyrophosphatase complement(2755535..2756917) Runella slithyformis DSM 19594 10870922 YP_004655934.1 CDS Runsl_2392 NC_015703.1 2757159 2758355 R COGs: COG0337 3-dehydroquinate synthetase; InterPro IPR002658; KEGG: dfe:Dfer_2884 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase AroB; PRIAM: 3-dehydroquinate synthase; SPTR: 3-dehydroquinate synthase; hypothetical protein complement(2757159..2758355) Runella slithyformis DSM 19594 10870923 YP_004655935.1 CDS Runsl_2393 NC_015703.1 2758531 2759697 R PFAM: 3-dehydroquinate synthase; COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537; KEGG: dfe:Dfer_2883 UbiA prenyltransferase; PFAM: UbiA prenyltransferase; SPTR: UbiA prenyltransferase; 3-dehydroquinate synthase complement(2758531..2759697) Runella slithyformis DSM 19594 10870924 YP_004655936.1 CDS Runsl_2394 NC_015703.1 2759711 2760589 R PFAM: UbiA prenyltransferase; COGs: COG1099 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR001130; KEGG: dfe:Dfer_2882 TatD-related deoxyribonuclease; PFAM: Deoxyribonuclease, TatD-related; SPTR: TatD-related deoxyribonuclease; UbiA prenyltransferase complement(2759711..2760589) Runella slithyformis DSM 19594 10870925 YP_004655937.1 CDS Runsl_2395 NC_015703.1 2760591 2761610 R PFAM: TatD related DNase; KEGG: dfe:Dfer_2881 hypothetical protein; SPTR: uncharacterized protein; TatD-related deoxyribonuclease complement(2760591..2761610) Runella slithyformis DSM 19594 10870926 YP_004655938.1 CDS Runsl_2396 NC_015703.1 2761621 2762472 R COGs: COG0315 Molybdenum cofactor biosynthesis enzyme; InterPro IPR002820; KEGG: sli:Slin_2809 molybdenum cofactor biosynthesis protein C; PFAM: Molybdopterin cofactor biosynthesis MoaC region; SPTR: Molybdenum cofactor biosynthesis protein C; TIGRFAM: Molybdopterin cofactor biosynthesis MoaC region; hypothetical protein complement(2761621..2762472) Runella slithyformis DSM 19594 10870927 YP_004655939.1 CDS Runsl_2397 NC_015703.1 2762646 2763122 D PFAM: MoaC family; TIGRFAM: molybdenum cofactor biosynthesis protein MoaC; KEGG: sli:Slin_3341 hypothetical protein; SPTR: uncharacterized protein; molybdenum cofactor biosynthesis protein C 2762646..2763122 Runella slithyformis DSM 19594 10870928 YP_004655940.1 CDS Runsl_2398 NC_015703.1 2763130 2764194 R KEGG: sli:Slin_4633 transmembrane anti-sigma factor; SPTR: transmembrane anti-sigma factor; hypothetical protein complement(2763130..2764194) Runella slithyformis DSM 19594 10870929 YP_004655941.1 CDS Runsl_2399 NC_015703.1 2764338 2765321 R COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_1125 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein complement(2764338..2765321) Runella slithyformis DSM 19594 10870930 YP_004655942.1 CDS Runsl_2400 NC_015703.1 2765293 2765835 R PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG4115 conserved hypothetical protein; InterPro IPR009614; KEGG: cyt:cce_1706 addiction module toxin, Txe/YoeB; PFAM: Addiction module toxin, Txe/YoeB; SPTR: Genome sequencing data, contig C327; TIGRFAM: Addiction module toxin, Txe/YoeB; ECF subfamily RNA polymerase sigma-24 subunit complement(2765293..2765835) Runella slithyformis DSM 19594 10870931 YP_004655943.1 CDS Runsl_2401 NC_015703.1 2766133 2766396 R PFAM: Plasmid encoded toxin Txe; TIGRFAM: toxin-antitoxin system, toxin component, Txe/YoeB family; Txe/YoeB family addiction module toxin complement(2766133..2766396) Runella slithyformis DSM 19594 10870932 YP_004655944.1 CDS Runsl_2402 NC_015703.1 2766393 2766602 R COGs: COG0078 Ornithine carbamoyltransferase; InterPro IPR006132:IPR006131; KEGG: dfe:Dfer_4418 aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; PRIAM: N-acetylornithine carbamoyltransferase; SPTR: Aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; hypothetical protein complement(2766393..2766602) Runella slithyformis DSM 19594 10870933 YP_004655945.1 CDS Runsl_2403 NC_015703.1 2766640 2767590 R PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; COGs: COG0386 Glutathione peroxidase; InterPro IPR000889; KEGG: dfe:Dfer_2679 glutathione peroxidase; PFAM: Glutathione peroxidase; SPTR: Glutathione peroxidase; N-acetylornithine carbamoyltransferase complement(2766640..2767590) Runella slithyformis DSM 19594 10870934 YP_004655946.1 CDS Runsl_2404 NC_015703.1 2767818 2768399 R PFAM: Glutathione peroxidase; InterPro IPR000620; KEGG: dfe:Dfer_2483 membrane protein containing DUF6; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: Membrane protein containing DUF6; glutathione peroxidase complement(2767818..2768399) Runella slithyformis DSM 19594 10870935 YP_004655947.1 CDS Runsl_2405 NC_015703.1 2768490 2769392 R PFAM: EamA-like transporter family; COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: sli:Slin_5951 peptidase M16 domain protein; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: Peptidase M16 domain protein; hypothetical protein complement(2768490..2769392) Runella slithyformis DSM 19594 10870936 YP_004655948.1 CDS Runsl_2406 NC_015703.1 2769519 2770790 D PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16); COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: dfe:Dfer_3628 peptidylprolyl isomerase FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; peptidase M16 domain-containing protein 2769519..2770790 Runella slithyformis DSM 19594 10870937 YP_004655949.1 CDS Runsl_2407 NC_015703.1 2770847 2771692 D PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; COGs: COG0579 dehydrogenase; InterPro IPR006076; KEGG: sli:Slin_5628 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase; FKBP-type peptidylprolyl isomerase 2770847..2771692 Runella slithyformis DSM 19594 10870938 YP_004655950.1 CDS Runsl_2408 NC_015703.1 2771849 2773054 R PFAM: FAD dependent oxidoreductase; COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: bur:Bcep18194_A3978 acetyltransferase; SPTR: uncharacterized protein; FAD dependent oxidoreductase complement(2771849..2773054) Runella slithyformis DSM 19594 10870939 YP_004655951.1 CDS Runsl_2409 NC_015703.1 2773112 2773666 D PFAM: Bacterial transferase hexapeptide (three repeats); Prodigal; manually curated; acetyltransferase 2773112..2773666 Runella slithyformis DSM 19594 10870940 YP_004655952.1 CDS Runsl_2411 NC_015703.1 2775036 2776379 R COGs: COG4152 ABC-type uncharacterized transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: sli:Slin_1739 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; ABC transporter complement(2775036..2776379) Runella slithyformis DSM 19594 10870942 YP_004655953.1 CDS Runsl_2412 NC_015703.1 2776462 2777397 R PFAM: ABC transporter; manually curated; ABC transporter complement(2776462..2777397) Runella slithyformis DSM 19594 10870943 YP_004655954.1 CDS Runsl_2414 NC_015703.1 2778018 2778200 D KEGG: dfe:Dfer_0080 cytochrome c-related protein; SPTR: Cytochrome c-related protein; hypothetical protein 2778018..2778200 Runella slithyformis DSM 19594 10870945 YP_004655955.1 CDS Runsl_2415 NC_015703.1 2778197 2779198 D PFAM: Cytochrome c; KEGG: sli:Slin_2866 hypothetical protein; SPTR: uncharacterized protein; cytochrome c-like protein 2778197..2779198 Runella slithyformis DSM 19594 10870946 YP_004655956.1 CDS Runsl_2416 NC_015703.1 2779281 2780153 D COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR011659:IPR001375; KEGG: sli:Slin_3267 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein; hypothetical protein 2779281..2780153 Runella slithyformis DSM 19594 10870947 YP_004655957.1 CDS Runsl_2417 NC_015703.1 2780360 2782465 R PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region; WD40-like Beta Propeller Repeat; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: dfe:Dfer_4672 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; SPTR: Aldehyde Dehydrogenase; peptidase S9 prolyl oligopeptidase active site domain-containing protein complement(2780360..2782465) Runella slithyformis DSM 19594 10870948 YP_004655958.1 CDS Runsl_2418 NC_015703.1 2782721 2784115 D PFAM: Aldehyde dehydrogenase; COGs: COG0518 GMP synthase - Glutamine amidotransferase domain; InterPro IPR000991; KEGG: dfe:Dfer_4674 amidotransferase, PFAM: Glutamine amidotransferase class-I, C-terminal; SPTR: Amidotransferase; aldehyde dehydrogenase 2782721..2784115 Runella slithyformis DSM 19594 10870949 YP_004655959.1 CDS Runsl_2419 NC_015703.1 2784218 2784928 D PFAM: Glutamine amidotransferase class-I; glutamine amidotransferase 2784218..2784928 Runella slithyformis DSM 19594 10870950 YP_004655960.1 CDS Runsl_2420 NC_015703.1 2785031 2785621 D InterPro IPR010496; KEGG: fbc:FB2170_08039 multi-domain-containing protein; PFAM: Protein of unknown function DUF1080; SPTR: multi-domain protein; hypothetical protein 2785031..2785621 Runella slithyformis DSM 19594 10870951 YP_004655961.1 CDS Runsl_2421 NC_015703.1 2785713 2786489 D PFAM: Domain of Unknown Function (DUF1080); KEGG: sus:Acid_3659 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2785713..2786489 Runella slithyformis DSM 19594 10870952 YP_004655962.1 CDS Runsl_2422 NC_015703.1 2786675 2787769 R InterPro IPR019115; KEGG: dfe:Dfer_2378 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: uncharacterized protein; hypothetical protein complement(2786675..2787769) Runella slithyformis DSM 19594 10870953 YP_004655963.1 CDS Runsl_2423 NC_015703.1 2787785 2788576 R PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; InterPro IPR000531; KEGG: sli:Slin_3443 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; hypothetical protein complement(2787785..2788576) Runella slithyformis DSM 19594 10870954 YP_004655964.1 CDS Runsl_2424 NC_015703.1 2788624 2791506 R PFAM: TonB dependent receptor; Prodigal; manually curated; TonB-dependent receptor complement(2788624..2791506) Runella slithyformis DSM 19594 10870955 YP_004655965.1 CDS Runsl_2426 NC_015703.1 2793104 2793406 D manually curated; transposase IS3/is911 family protein 2793104..2793406 Runella slithyformis DSM 19594 10870957 YP_004655966.1 CDS Runsl_2429 NC_015703.1 2794495 2794701 R COGs: COG0049 Ribosomal protein S7; InterPro IPR005717:IPR000235; KEGG: sli:Slin_4448 ribosomal protein S7; PFAM: Ribosomal protein S7; SPTR: 30S ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type; manually curated; hypothetical protein complement(2794495..2794701) Runella slithyformis DSM 19594 10870960 YP_004655967.1 CDS Runsl_2430 NC_015703.1 2794825 2795292 R PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle; COGs: COG0048 Ribosomal protein S12; InterPro IPR005679:IPR006032; KEGG: dfe:Dfer_4339 30S ribosomal protein S12; PFAM: Ribosomal protein S12/S23; SPTR: 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacterial-type; 30S ribosomal protein S7 complement(2794825..2795292) Runella slithyformis DSM 19594 10870961 YP_004655968.1 CDS Runsl_2431 NC_015703.1 2795455 2795877 R PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle; COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: fps:FP2000 thioredoxin family protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Thioredoxin family protein; 30S ribosomal protein S12 complement(2795455..2795877) Runella slithyformis DSM 19594 10870962 YP_004655969.1 CDS Runsl_2432 NC_015703.1 2796154 2796531 R PFAM: Rhodanese-like domain; COGs: COG0730 permease; InterPro IPR002781; KEGG: wvi:Weevi_0465 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: Membrane protein; rhodanese-like protein complement(2796154..2796531) Runella slithyformis DSM 19594 10870963 YP_004655970.1 CDS Runsl_2433 NC_015703.1 2796566 2797405 R PFAM: Sulfite exporter TauE/SafE; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: sli:Slin_0700 LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SPTR: Two component transcriptional regulator, LuxR family; hypothetical protein complement(2796566..2797405) Runella slithyformis DSM 19594 10870964 YP_004655971.1 CDS Runsl_2434 NC_015703.1 2797445 2798098 R PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594:IPR011712; KEGG: sli:Slin_0699 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; SMART: ATP-binding region, ATPase-like; SPTR: Histidine kinase; LuxR family transcriptional regulator complement(2797445..2798098) Runella slithyformis DSM 19594 10870965 YP_004655972.1 CDS Runsl_2435 NC_015703.1 2798108 2799544 R PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenase; InterPro IPR012748:IPR017941; KEGG: cao:Celal_1365 assimilatory nitrite reductase (nad(p)h) small subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Assimilatory nitrite reductase (NAD(P)H) small subunit; TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirD; signal transduction histidine kinase complement(2798108..2799544) Runella slithyformis DSM 19594 10870966 YP_004655973.1 CDS Runsl_2436 NC_015703.1 2799694 2800032 R PFAM: Rieske [2Fe-2S] domain; TIGRFAM: nitrite reductase [NAD(P)H], small subunit; COGs: COG1251 NAD(P)H-nitrite reductase; InterProIPR012744:IPR013027:IPR007419:IPR005117:IPR 006067; KEGG: chu:CHU_1332 assimilatory nitrite reductase (NAD(P)H) large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; Nitrite/sulphite reductase 4Fe-4S region; PRIAM: Nitrite reductase (NAD(P)H); SPTR: Assimilatory nitrite reductase (NAD(P)H) large subunit; TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirB; nitrite reductase (NAD(P)H) small subunit complement(2799694..2800032) Runella slithyformis DSM 19594 10870967 YP_004655974.1 CDS Runsl_2437 NC_015703.1 2800065 2802584 R PFAM: Pyridine nucleotide-disulphide oxidoreductase; Nitrite and sulphite reductase 4Fe-4S domain; BFD-like [2Fe-2S] binding domain; Nitrite/Sulfite reductase ferredoxin-like half domain; TIGRFAM: nitrite reductase [NAD(P)H], large subunit; COGs: COG0007 Uroporphyrinogen-III methylase; InterPro IPR006366:IPR000878; KEGG: chu:CHU_2636 uroporphyrinogen-III C-methyltransferase; PFAM: Tetrapyrrole methylase; PRIAM: Uroporphyrinogen-III C-methyltransferase; SPTR: Uroporphyrinogen-III C-methyltransferase; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; nitrite reductase (NAD(P)H) large subunit complement(2800065..2802584) Runella slithyformis DSM 19594 10870968 YP_004655975.1 CDS Runsl_2438 NC_015703.1 2802977 2803738 D PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase; COGs: COG3458 Acetyl esterase (deacetylase); InterPro IPR008391; KEGG: dfe:Dfer_2740 acetyl xylan esterase; PFAM: Acetyl xylan esterase; SPTR: Acetyl xylan esterase; uroporphyrin-III C-methyltransferase 2802977..2803738 Runella slithyformis DSM 19594 10870969 YP_004655976.1 CDS Runsl_2439 NC_015703.1 2803752 2804906 D PFAM: Acetyl xylan esterase (AXE1); COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277; KEGG: tle:Tlet_1106 cystathionine gamma-synthase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; PRIAM: Cystathionine beta-lyase; SPTR: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; acetyl xylan esterase 2803752..2804906 Runella slithyformis DSM 19594 10870970 YP_004655977.1 CDS Runsl_2440 NC_015703.1 2804955 2806115 R PFAM: Cys/Met metabolism PLP-dependent enzyme; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: sli:Slin_2930 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SPTR: Histidine kinase; cystathionine beta-lyase complement(2804955..2806115) Runella slithyformis DSM 19594 10870971 YP_004655978.1 CDS Runsl_2441 NC_015703.1 2806211 2807641 R PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: sli:Slin_2929 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family; integral membrane sensor signal transduction histidine kinase complement(2806211..2807641) Runella slithyformis DSM 19594 10870972 YP_004655979.1 CDS Runsl_2442 NC_015703.1 2807641 2808315 R PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR003088:IPR005084; KEGG: dfe:Dfer_1484 PKD domain containing protein; PFAM: PKD; Cytochrome c, class I; Carbohydrate binding domain, family 6; SMART: PKD; SPTR: Transcriptional regulator, Crp/Fnr family; winged helix family two component transcriptional regulator complement(2807641..2808315) Runella slithyformis DSM 19594 10870973 YP_004655980.1 CDS Runsl_2443 NC_015703.1 2808577 2811432 D PFAM: Cytochrome c; PKD domain; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR006311:IPR012307; KEGG: sli:Slin_0334 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; PKD domain-containing protein 2808577..2811432 Runella slithyformis DSM 19594 10870974 YP_004655981.1 CDS Runsl_2444 NC_015703.1 2811536 2812465 D PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; InterPro IPR000086; KEGG: sli:Slin_0652 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: uncharacterized protein; xylose isomerase domain-containing protein 2811536..2812465 Runella slithyformis DSM 19594 10870975 YP_004655982.1 CDS Runsl_2445 NC_015703.1 2812575 2813306 R PFAM: NUDIX domain; InterPro IPR012910:IPR000531; KEGG: sli:Slin_0274 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; NUDIX hydrolase complement(2812575..2813306) Runella slithyformis DSM 19594 10870976 YP_004655983.1 CDS Runsl_2446 NC_015703.1 2813956 2817186 D PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_4947 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 2813956..2817186 Runella slithyformis DSM 19594 10870977 YP_004655984.1 CDS Runsl_2447 NC_015703.1 2817218 2818954 D PFAM: SusD family; InterPro IPR013517:IPR011519; KEGG: dfe:Dfer_4948 ASPIC/UnbV domain protein; PFAM: ASPIC/UnbV; FG-GAP; SPTR: ASPIC/UnbV domain protein; RagB/SusD domain-containing protein 2817218..2818954 Runella slithyformis DSM 19594 10870978 YP_004655985.1 CDS Runsl_2448 NC_015703.1 2819106 2822657 D PFAM: ASPIC and UnbV; FG-GAP repeat; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterProIPR005897:IPR003593:IPR005074:IPR001140:IPR 003439; KEGG: zpr:ZPR_4399 bacteriocin/lantibiotic ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Probable bacteriocin/lantibiotic ABC transporter, ATP-binding protein; TIGRFAM: Peptidase C39, ABC-type bacteriocin transporter; ASPIC/UnbV domain-containing protein 2819106..2822657 Runella slithyformis DSM 19594 10870979 YP_004655986.1 CDS Runsl_2449 NC_015703.1 2822728 2824935 R PFAM: Peptidase C39 family; ABC transporter transmembrane region; ABC transporter; TIGRFAM: ABC-type bacteriocin transporter; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: shg:Sph21_1896 secretion protein HlyD family protein; PFAM: Secretion protein HlyD; SPTR: Secretion protein HlyD family protein; bacteriocin ABC transporter complement(2822728..2824935) Runella slithyformis DSM 19594 10870980 YP_004655987.1 CDS Runsl_2450 NC_015703.1 2824975 2826174 R KEGG: pdi:BDI_1304 hypothetical protein; SPTR: uncharacterized protein; secretion protein HlyD family protein complement(2824975..2826174) Runella slithyformis DSM 19594 10870981 YP_004655988.1 CDS Runsl_2451 NC_015703.1 2826296 2828227 R hypothetical protein complement(2826296..2828227) Runella slithyformis DSM 19594 10870982 YP_004655989.1 CDS Runsl_2452 NC_015703.1 2828311 2828517 R hypothetical protein complement(2828311..2828517) Runella slithyformis DSM 19594 10870983 YP_004655990.1 CDS Runsl_2453 NC_015703.1 2828551 2828751 R hypothetical protein complement(2828551..2828751) Runella slithyformis DSM 19594 10870984 YP_004655991.1 CDS Runsl_2454 NC_015703.1 2828845 2829057 R hypothetical protein complement(2828845..2829057) Runella slithyformis DSM 19594 10870985 YP_004655992.1 CDS Runsl_2455 NC_015703.1 2829225 2829407 R hypothetical protein complement(2829225..2829407) Runella slithyformis DSM 19594 10870986 YP_004655993.1 CDS Runsl_2456 NC_015703.1 2829506 2829712 R InterPro IPR001387; KEGG: fjo:Fjoh_4208 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; hypothetical protein complement(2829506..2829712) Runella slithyformis DSM 19594 10870987 YP_004655994.1 CDS Runsl_2457 NC_015703.1 2829876 2830130 R PFAM: Helix-turn-helix; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: cpi:Cpin_3396 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; helix-turn-helix domain-containing protein complement(2829876..2830130) Runella slithyformis DSM 19594 10870988 YP_004655995.1 CDS Runsl_2458 NC_015703.1 2830334 2831062 R PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: cpi:Cpin_3395 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; LytTR family two component transcriptional regulator complement(2830334..2831062) Runella slithyformis DSM 19594 10870989 YP_004655996.1 CDS Runsl_2459 NC_015703.1 2831119 2832141 R PFAM: Histidine kinase; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: cpi:Cpin_6217 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; signal transduction histidine kinase complement(2831119..2832141) Runella slithyformis DSM 19594 10870990 YP_004655997.1 CDS Runsl_2460 NC_015703.1 2832270 2834669 D TonB-dependent receptor 2832270..2834669 Runella slithyformis DSM 19594 10870991 YP_004655998.1 CDS Runsl_2461 NC_015703.1 2834682 2834822 D hypothetical protein 2834682..2834822 Runella slithyformis DSM 19594 10870992 YP_004655999.1 CDS Runsl_2462 NC_015703.1 2835313 2835498 D hypothetical protein 2835313..2835498 Runella slithyformis DSM 19594 10870993 YP_004656000.1 CDS Runsl_2463 NC_015703.1 2835520 2835759 D hypothetical protein 2835520..2835759 Runella slithyformis DSM 19594 10870994 YP_004656001.1 CDS Runsl_2464 NC_015703.1 2835756 2835959 D InterPro IPR007822; KEGG: cpi:Cpin_3397 lanthionine synthetase C family protein; PFAM: Lanthionine synthetase C-like; SPTR: Lanthionine synthetase C family protein; hypothetical protein 2835756..2835959 Runella slithyformis DSM 19594 10870995 YP_004656002.1 CDS Runsl_2465 NC_015703.1 2836020 2837192 D PFAM: Lanthionine synthetase C-like protein; InterPro IPR006826:IPR006827; KEGG: cpi:Cpin_3392 lantibiotic dehydratase; PFAM: Lantibiotic dehydratase, C-terminal; Lantibiotic dehydratase, N-terminal; SPTR: Lantibiotic dehydratase domain protein; Lanthionine synthetase C family protein 2836020..2837192 Runella slithyformis DSM 19594 10870996 YP_004656003.1 CDS Runsl_2466 NC_015703.1 2837335 2840409 D PFAM: Lantibiotic dehydratase, N terminus; Lantibiotic dehydratase, C terminus; TIGRFAM: thiopeptide-type bacteriocin biosynthesis domain; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR005074:IPR001140:IPR003439:IPR003593; KEGG: shg:Sph21_0591 xenobiotic-transporting ATPase; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Bacteriocin ABC transporter, ATP-binding/permease; Lantibiotic dehydratase domain-containing protein 2837335..2840409 Runella slithyformis DSM 19594 10870997 YP_004656004.1 CDS Runsl_2467 NC_015703.1 2840461 2842626 R PFAM: ABC transporter; ABC transporter transmembrane region; Peptidase C39 family; xenobiotic-transporting ATPase complement(2840461..2842626) Runella slithyformis DSM 19594 10870998 YP_004656005.1 CDS Runsl_2468 NC_015703.1 2842686 2842847 R InterPro IPR013740; KEGG: ahe:Arch_1469 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Redoxin; SPTR: uncharacterized protein; hypothetical protein complement(2842686..2842847) Runella slithyformis DSM 19594 10870999 YP_004656006.1 CDS Runsl_2469 NC_015703.1 2842844 2843368 R PFAM: AhpC/TSA family; KEGG: shg:Sph21_0589 hypothetical protein; SPTR: uncharacterized protein; redoxin domain-containing protein complement(2842844..2843368) Runella slithyformis DSM 19594 10871000 YP_004656007.1 CDS Runsl_2470 NC_015703.1 2843382 2844023 R hypothetical protein complement(2843382..2844023) Runella slithyformis DSM 19594 10871001 YP_004656008.1 CDS Runsl_2471 NC_015703.1 2844137 2844301 R hypothetical protein complement(2844137..2844301) Runella slithyformis DSM 19594 10871002 YP_004656009.1 CDS Runsl_2472 NC_015703.1 2844453 2844653 R hypothetical protein complement(2844453..2844653) Runella slithyformis DSM 19594 10871003 YP_004656010.1 CDS Runsl_2473 NC_015703.1 2845503 2845697 D InterPro IPR001387; KEGG: sli:Slin_1148 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; hypothetical protein 2845503..2845697 Runella slithyformis DSM 19594 10871004 YP_004656011.1 CDS Runsl_2474 NC_015703.1 2845684 2845935 R PFAM: Helix-turn-helix; InterPro IPR012944; KEGG: sli:Slin_0022 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; helix-turn-helix domain-containing protein complement(2845684..2845935) Runella slithyformis DSM 19594 10871005 YP_004656012.1 CDS Runsl_2475 NC_015703.1 2846223 2847911 R PFAM: SusD family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_0021 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; RagB/SusD domain-containing protein complement(2846223..2847911) Runella slithyformis DSM 19594 10871006 YP_004656013.1 CDS Runsl_2476 NC_015703.1 2847923 2850940 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3282 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; TonB-dependent receptor plug complement(2847923..2850940) Runella slithyformis DSM 19594 10871007 YP_004656014.1 CDS Runsl_2477 NC_015703.1 2851511 2854744 D PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_3283 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 2851511..2854744 Runella slithyformis DSM 19594 10871008 YP_004656015.1 CDS Runsl_2478 NC_015703.1 2854779 2856542 D PFAM: SusD family; COGs: COG1562 Phytoene/squalene synthetase; InterPro IPR002060; KEGG: sli:Slin_5959 squalene/phytoene synthase; PFAM: Squalene/phytoene synthase; SPTR: Squalene/phytoene synthase; RagB/SusD domain-containing protein 2854779..2856542 Runella slithyformis DSM 19594 10871009 YP_004656016.1 CDS Runsl_2479 NC_015703.1 2856699 2857553 R PFAM: Squalene/phytoene synthase; COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR014105:IPR002937; KEGG: sli:Slin_5960 phytoene desaturase; PFAM: Amine oxidase; SPTR: Phytoene desaturase; TIGRFAM: Zeta-phytoene desaturase; squalene/phytoene synthase complement(2856699..2857553) Runella slithyformis DSM 19594 10871010 YP_004656017.1 CDS Runsl_2480 NC_015703.1 2857583 2859136 R PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase; Prodigal; manually curated; phytoene desaturase complement(2857583..2859136) Runella slithyformis DSM 19594 10871011 YP_004656018.1 CDS Runsl_2482 NC_015703.1 2859554 2859670 R InterPro IPR012944; KEGG: sli:Slin_3419 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; hypothetical protein complement(2859554..2859670) Runella slithyformis DSM 19594 10871013 YP_004656019.1 CDS Runsl_2483 NC_015703.1 2859859 2861415 R PFAM: SusD family; InterPro IPR012910:IPR000531; KEGG: sli:Slin_3420 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; RagB/SusD domain-containing protein complement(2859859..2861415) Runella slithyformis DSM 19594 10871014 YP_004656020.1 CDS Runsl_2484 NC_015703.1 2861451 2864669 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; TonB-dependent receptor plug complement(2861451..2864669) Runella slithyformis DSM 19594 10871015 YP_004656021.1 CDS Runsl_2485 NC_015703.1 2865152 2865796 R COGs: COG2936 acyl esterase; InterPro IPR005674:IPR000383:IPR013736; KEGG: sus:Acid_1582 X-Pro dipeptidyl-peptidase domain-containing protein; PFAM: Peptidase S15/CocE/NonD, C-terminal; Peptidase S15; SPTR: Acylase, ; TIGRFAM: CocE/NonD hydrolase; hypothetical protein complement(2865152..2865796) Runella slithyformis DSM 19594 10871016 YP_004656022.1 CDS Runsl_2486 NC_015703.1 2866011 2867891 D PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: hydrolase, CocE/NonD family; InterPro IPR002860; KEGG: aba:Acid345_0515 hypothetical protein; PFAM: BNR repeat; SPTR: uncharacterized protein; hydrolase 2866011..2867891 Runella slithyformis DSM 19594 10871017 YP_004656023.1 CDS Runsl_2487 NC_015703.1 2867993 2871319 D PFAM: BNR/Asp-box repeat; COGs: COG1649 conserved hypothetical protein; InterPro IPR003790:IPR003961; KEGG: dfe:Dfer_3734 protein of unknown function DUF187; PFAM: Protein of unknown function DUF187; Fibronectin, type III; SPTR: uncharacterized protein; glycosyl hydrolase family protein 2867993..2871319 Runella slithyformis DSM 19594 10871018 YP_004656024.1 CDS Runsl_2488 NC_015703.1 2871430 2872995 D PFAM: Uncharacterised BCR, COG1649; COGs: COG1912 conserved hypothetical protein; InterPro IPR002747; KEGG: cpi:Cpin_4936 hypothetical protein; PFAM: Protein of unknown function DUF62; SPTR: uncharacterized protein; hypothetical protein 2871430..2872995 Runella slithyformis DSM 19594 10871019 YP_004656025.1 CDS Runsl_2489 NC_015703.1 2873028 2873918 R PFAM: S-adenosyl-l-methionine hydroxide adenosyltransferase; COGs: COG3876 conserved hypothetical protein; InterPro IPR008302; KEGG: lil:LA_0544 hypothetical protein; PFAM: Uncharacterised conserved protein UCP016719; SPTR: uncharacterized protein; hypothetical protein complement(2873028..2873918) Runella slithyformis DSM 19594 10871020 YP_004656026.1 CDS Runsl_2490 NC_015703.1 2873999 2875198 R PFAM: Protein of unknown function (DUF1343); COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR011547; KEGG: sli:Slin_5026 sulfate transporter; PFAM: Sulphate transporter; SPTR: Sulphate transporter; hypothetical protein complement(2873999..2875198) Runella slithyformis DSM 19594 10871021 YP_004656027.1 CDS Runsl_2491 NC_015703.1 2875366 2876988 D PFAM: Sulfate transporter family; InterPro IPR005067; KEGG: sli:Slin_4583 acyl-(acyl-carrier-protein) desaturase; PFAM: Fatty acid desaturase, type 2; PRIAM: Acyl-[acyl-carrier-protein] desaturase; SPTR: Acyl-(Acyl-carrier-protein) desaturase; sulfate transporter 2875366..2876988 Runella slithyformis DSM 19594 10871022 YP_004656028.1 CDS Runsl_2492 NC_015703.1 2877107 2878090 R PFAM: Fatty acid desaturase; COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: sli:Slin_4584 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; acyl-ACP desaturase complement(2877107..2878090) Runella slithyformis DSM 19594 10871023 YP_004656029.1 CDS Runsl_2493 NC_015703.1 2878232 2878972 D PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; phospholipid/glycerol acyltransferase 2878232..2878972 Runella slithyformis DSM 19594 10871024 YP_004656030.1 CDS Runsl_2494 NC_015703.1 2879153 2879479 D COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR011547; KEGG: dfe:Dfer_2931 sulphate transporter; PFAM: Sulphate transporter; SPTR: Sulphate transporter; hypothetical protein 2879153..2879479 Runella slithyformis DSM 19594 10871025 YP_004656031.1 CDS Runsl_2495 NC_015703.1 2879690 2881243 D PFAM: Sulfate transporter family; COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR011547; KEGG: rbi:RB2501_07590 sulfate transporter; PFAM: Sulphate transporter; SPTR: Sulfate transporter family protein; sulfate transporter 2879690..2881243 Runella slithyformis DSM 19594 10871026 YP_004656032.1 CDS Runsl_2496 NC_015703.1 2881306 2882880 D PFAM: Sulfate transporter family; COGs: COG0288 Carbonic anhydrase; InterPro IPR001765; KEGG: dfe:Dfer_4665 carbonate dehydratase; PFAM: Carbonic anhydrase; PRIAM: Carbonate dehydratase; SPTR: Carbonic anhydrase; sulfate transporter 2881306..2882880 Runella slithyformis DSM 19594 10871027 YP_004656033.1 CDS Runsl_2497 NC_015703.1 2882846 2883523 D PFAM: Carbonic anhydrase; KEGG: rbi:RB2501_00501 membrane associated hydrolase; SPTR: membrane associated hydrolase; carbonate dehydratase 2882846..2883523 Runella slithyformis DSM 19594 10871028 YP_004656034.1 CDS Runsl_2498 NC_015703.1 2883574 2885922 R PFAM: Domain of unknown function (DUF1083); InterPro IPR013740; KEGG: sli:Slin_4427 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Redoxin; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; membrane associated hydrolase complement(2883574..2885922) Runella slithyformis DSM 19594 10871029 YP_004656035.1 CDS Runsl_2499 NC_015703.1 2886044 2887267 D PFAM: AhpC/TSA family; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: bba:Bd2163 sugar transport protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Sugar transport protein; redoxin domain-containing protein 2886044..2887267 Runella slithyformis DSM 19594 10871030 YP_004656036.1 CDS Runsl_2500 NC_015703.1 2887350 2888570 D PFAM: Major Facilitator Superfamily; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: dfe:Dfer_4727 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; major facilitator superfamily protein 2887350..2888570 Runella slithyformis DSM 19594 10871031 YP_004656037.1 CDS Runsl_2501 NC_015703.1 2888715 2890148 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG1457 Purine-cytosine permease and related protein; KEGG: rmr:Rmar_0690 transmembrane prediction; SPTR: nucleoside transport protein; oxidoreductase domain-containing protein complement(2888715..2890148) Runella slithyformis DSM 19594 10871032 YP_004656038.1 CDS Runsl_2502 NC_015703.1 2890370 2891749 D transmembrane prediction 2890370..2891749 Runella slithyformis DSM 19594 10871033 YP_004656039.1 CDS Runsl_2503 NC_015703.1 2891755 2891919 D InterPro IPR010476; KEGG: cpi:Cpin_4926 rhamnose-proton symporter; PFAM: RhaT l-rhamnose-proton symport 2; SPTR: RhaT l-rhamnose-proton symport 2; hypothetical protein 2891755..2891919 Runella slithyformis DSM 19594 10871034 YP_004656040.1 CDS Runsl_2504 NC_015703.1 2892004 2893056 D PFAM: L-rhamnose-proton symport protein (RhaT); COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: sli:Slin_6496 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; RhaT l-rhamnose-proton symport 2 2892004..2893056 Runella slithyformis DSM 19594 10871035 YP_004656041.1 CDS Runsl_2505 NC_015703.1 2893147 2893773 R PFAM: ABC transporter; InterPro IPR006311:IPR012307; KEGG: dfe:Dfer_4958 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; ABC transporter complement(2893147..2893773) Runella slithyformis DSM 19594 10871036 YP_004656042.1 CDS Runsl_2506 NC_015703.1 2893850 2894779 R PFAM: Xylose isomerase-like TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: dfe:Dfer_3708 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein complement(2893850..2894779) Runella slithyformis DSM 19594 10871037 YP_004656043.1 CDS Runsl_2507 NC_015703.1 2894823 2895680 R PFAM: Xylose isomerase-like TIM barrel; COGs: COG1200 RecG-like helicase; InterProIPR004609:IPR004365:IPR011545:IPR001650:IPR 014001; KEGG: dfe:Dfer_4892 ATP-dependent DNA helicase RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent DNA helicase RecG; TIGRFAM: DNA helicase, ATP-dependent, RecG; xylose isomerase domain-containing protein complement(2894823..2895680) Runella slithyformis DSM 19594 10871038 YP_004656044.1 CDS Runsl_2508 NC_015703.1 2895863 2897974 D PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecG; InterPro IPR011462; KEGG: ppn:Palpr_2869 hypothetical protein; SPTR: uncharacterized protein; ATP-dependent DNA helicase RecG 2895863..2897974 Runella slithyformis DSM 19594 10871039 YP_004656045.1 CDS Runsl_2509 NC_015703.1 2898231 2898821 D PFAM: Transposase IS200 like; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: dfe:Dfer_3788 UvrD/REP helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: UvrD/REP helicase; hypothetical protein 2898231..2898821 Runella slithyformis DSM 19594 10871040 YP_004656046.1 CDS Runsl_2510 NC_015703.1 2899056 2901389 D PFAM: UvrD/REP helicase; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: dfe:Dfer_4308 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; UvrD/REP helicase 2899056..2901389 Runella slithyformis DSM 19594 10871041 YP_004656047.1 CDS Runsl_2511 NC_015703.1 2901426 2901998 D PFAM: Protein of unknown function (DUF820); COGs: COG0632 Holliday junction resolvasome DNA-binding subunit; HAMAP: Holliday junction ATP-dependent DNA helicase ruvA; InterPro IPR000085:IPR013849:IPR011114; KEGG: dfe:Dfer_4464 Holliday junction DNA helicase RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal; SPTR: Holliday junction ATP-dependent DNA helicase ruvA; TIGRFAM: Bacterial DNA recombination protein RuvA; hypothetical protein 2901426..2901998 Runella slithyformis DSM 19594 10871042 YP_004656048.1 CDS Runsl_2512 NC_015703.1 2902022 2902630 R PFAM: RuvA, C-terminal domain; RuvA N terminal domain; TIGRFAM: Holliday junction DNA helicase, RuvA subunit; InterPro IPR013097; KEGG: dfe:Dfer_3797 stress responsive alpha-beta barrel domain protein; PFAM: Stress responsive alpha-beta barrel; SPTR: Stress responsive alpha-beta barrel domain protein; Holliday junction DNA helicase subunit RuvA complement(2902022..2902630) Runella slithyformis DSM 19594 10871043 YP_004656049.1 CDS Runsl_2513 NC_015703.1 2902691 2903065 R PFAM: Stress responsive A/B Barrel Domain; KEGG: dfe:Dfer_3796 hypothetical protein; SPTR: uncharacterized protein; stress responsive alpha-beta barrel domain-containing protein complement(2902691..2903065) Runella slithyformis DSM 19594 10871044 YP_004656050.1 CDS Runsl_2514 NC_015703.1 2903108 2903308 R KEGG: ran:Riean_1311 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2903108..2903308) Runella slithyformis DSM 19594 10871045 YP_004656051.1 CDS Runsl_2515 NC_015703.1 2903382 2904248 R InterPro IPR018750; KEGG: cpi:Cpin_0833 hypothetical protein; PFAM: Protein of unknown function DUF2306, membrane; SPTR: uncharacterized protein; hypothetical protein complement(2903382..2904248) Runella slithyformis DSM 19594 10871046 YP_004656052.1 CDS Runsl_2516 NC_015703.1 2904296 2904964 R PFAM: Predicted membrane protein (DUF2306); COGs: COG0133 Tryptophan synthase beta chain; HAMAP: Tryptophan synthase beta chain; InterPro IPR006654:IPR001926; KEGG: lby:Lbys_2384 tryptophan synthase, beta chain; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Tryptophan synthase; SPTR: Tryptophan synthase beta chain; TIGRFAM: Tryptophan synthase, beta chain; hypothetical protein complement(2904296..2904964) Runella slithyformis DSM 19594 10871047 YP_004656053.1 CDS Runsl_2517 NC_015703.1 2904969 2906216 R PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: tryptophan synthase, beta subunit; COGs: COG0135 Phosphoribosylanthranilate isomerase; InterPro IPR001240; KEGG: dfe:Dfer_3794 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); PRIAM: Phosphoribosylanthranilate isomerase; SPTR: Phosphoribosylanthranilate isomerase; tryptophan synthase subunit beta complement(2904969..2906216) Runella slithyformis DSM 19594 10871048 YP_004656054.1 CDS Runsl_2518 NC_015703.1 2906226 2906876 R PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; COGs: COG0134 Indole-3-glycerol phosphate synthase; InterPro IPR013798; KEGG: dfe:Dfer_3793 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; PRIAM: Indole-3-glycerol-phosphate synthase; SPTR: Indole-3-glycerol phosphate synthase; phosphoribosylanthranilate isomerase complement(2906226..2906876) Runella slithyformis DSM 19594 10871049 YP_004656055.1 CDS Runsl_2519 NC_015703.1 2906894 2907697 R PFAM: Indole-3-glycerol phosphate synthase; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: dfe:Dfer_4673 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; indole-3-glycerol phosphate synthase complement(2906894..2907697) Runella slithyformis DSM 19594 10871050 YP_004656056.1 CDS Runsl_2520 NC_015703.1 2907697 2908296 R PFAM: Protein of unknown function (DUF820); COGs: COG0547 Anthranilate phosphoribosyltransferase; HAMAP: Anthranilate phosphoribosyl transferase; InterPro IPR005940:IPR017459:IPR000312; KEGG: dfe:Dfer_3792 anthranilate phosphoribosyltransferase; PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; PRIAM: Anthranilate phosphoribosyltransferase; SPTR: Anthranilate phosphoribosyltransferase; TIGRFAM: Anthranilate phosphoribosyl transferase; hypothetical protein complement(2907697..2908296) Runella slithyformis DSM 19594 10871051 YP_004656057.1 CDS Runsl_2521 NC_015703.1 2908298 2909287 R PFAM: Glycosyl transferase, a/b domain; Glycosyl transferase, helical bundle domain; TIGRFAM: anthranilate phosphoribosyltransferase; COGs: COG0181 Porphobilinogen deaminase; HAMAP: Porphobilinogen deaminase; InterPro IPR000860; KEGG: dfe:Dfer_3276 porphobilinogen deaminase; PFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; SPTR: Porphobilinogen deaminase; TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; anthranilate phosphoribosyltransferase complement(2908298..2909287) Runella slithyformis DSM 19594 10871052 YP_004656058.1 CDS Runsl_2522 NC_015703.1 2909308 2910231 R PFAM: Porphobilinogen deaminase, C-terminal domain; Porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase; InterPro IPR014968; KEGG: sli:Slin_1546 XisI protein; PFAM: XisI protein; SPTR: XisI protein; porphobilinogen deaminase complement(2909308..2910231) Runella slithyformis DSM 19594 10871053 YP_004656059.1 CDS Runsl_2523 NC_015703.1 2910264 2910602 R PFAM: XisI protein; COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR011611; KEGG: sli:Slin_6505 PfkB domain protein; PFAM: Carbohydrate/purine kinase; SPTR: PfkB domain protein; XisI protein complement(2910264..2910602) Runella slithyformis DSM 19594 10871054 YP_004656060.1 CDS Runsl_2524 NC_015703.1 2910658 2911641 R PFAM: pfkB family carbohydrate kinase; TIGRFAM: rfaE bifunctional protein, domain I; COGs: COG0512 Anthranilate/para-aminobenzoate synthase component II; InterPro IPR006221:IPR000991; KEGG: dfe:Dfer_3791 glutamine amidotransferase of anthranilate synthase; PFAM: Glutamine amidotransferase class-I, C-terminal; PRIAM: Anthranilate synthase; SPTR: Glutamine amidotransferase of anthranilate synthase; TIGRFAM: Glutamine amidotransferase of anthranilate synthase; PfkB domain-containing protein complement(2910658..2911641) Runella slithyformis DSM 19594 10871055 YP_004656061.1 CDS Runsl_2525 NC_015703.1 2911714 2912280 R PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase; COGs: COG1803 Methylglyoxal synthase; HAMAP: Methylglyoxal synthase; InterPro IPR004363:IPR011607; KEGG: lby:Lbys_1178 methylglyoxal synthase; PFAM: MGS-like; PRIAM: Methylglyoxal synthase; SPTR: Methylglyoxal synthase; TIGRFAM: Methylglyoxal synthase; glutamine amidotransferase of anthranilate synthase complement(2911714..2912280) Runella slithyformis DSM 19594 10871056 YP_004656062.1 CDS Runsl_2526 NC_015703.1 2912325 2912774 R PFAM: MGS-like domain; TIGRFAM: methylglyoxal synthase; COGs: COG0171 NAD synthase; InterPro IPR003694:IPR003010; KEGG: dfe:Dfer_2832 NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase; PRIAM: NAD(+) synthase (glutamine-hydrolyzing); SPTR: NAD+ synthetase; TIGRFAM: NAD+ synthase; methylglyoxal synthase complement(2912325..2912774) Runella slithyformis DSM 19594 10871057 YP_004656063.1 CDS Runsl_2527 NC_015703.1 2912839 2914863 R PFAM: NAD synthase; Carbon-nitrogen hydrolase; TIGRFAM: NAD+ synthetase; KEGG: sru:SRU_0224 colanic acid biosynthesis glycosyl transferase; SPTR: colanic acid biosynthesis glycosyl transferase; NAD+ synthetase complement(2912839..2914863) Runella slithyformis DSM 19594 10871058 YP_004656064.1 CDS Runsl_2528 NC_015703.1 2915019 2916203 R hypothetical protein complement(2915019..2916203) Runella slithyformis DSM 19594 10871059 YP_004656065.1 CDS Runsl_2529 NC_015703.1 2916324 2916725 R PFAM: AhpC/TSA family; InterPro IPR012910:IPR000531; KEGG: sli:Slin_4222 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein complement(2916324..2916725) Runella slithyformis DSM 19594 10871060 YP_004656066.1 CDS Runsl_2530 NC_015703.1 2916921 2919971 D PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: sli:Slin_4221 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 2916921..2919971 Runella slithyformis DSM 19594 10871061 YP_004656067.1 CDS Runsl_2531 NC_015703.1 2920010 2921422 D PFAM: SusD family; KEGG: sli:Slin_4220 hypothetical protein; SPTR: uncharacterized protein; RagB/SusD domain-containing protein 2920010..2921422 Runella slithyformis DSM 19594 10871062 YP_004656068.1 CDS Runsl_2532 NC_015703.1 2921485 2922357 D KEGG: sli:Slin_4219 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2921485..2922357 Runella slithyformis DSM 19594 10871063 YP_004656069.1 CDS Runsl_2533 NC_015703.1 2922401 2922892 D COGs: COG3291 FOG: PKD repeat; InterPro IPR000601; KEGG: sli:Slin_4218 PKD domain containing protein; PFAM: PKD; SMART: PKD; SPTR: PKD domain containing protein; hypothetical protein 2922401..2922892 Runella slithyformis DSM 19594 10871064 YP_004656070.1 CDS Runsl_2534 NC_015703.1 2922894 2925272 D PFAM: Pregnancy-associated plasma protein-A; PKD domain; COGs: COG0155 Sulfite reductase beta subunit (hemoprotein); InterPro IPR005117:IPR006067:IPR007842; KEGG: sli:Slin_2051 sulfite reductase (ferredoxin); PFAM: Nitrite/sulphite reductase 4Fe-4S region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; HEPN; PRIAM: Ferredoxin--nitrite reductase; SPTR: Sulfite reductase (Ferredoxin); PKD domain-containing protein 2922894..2925272 Runella slithyformis DSM 19594 10871065 YP_004656071.1 CDS Runsl_2535 NC_015703.1 2925532 2927703 D PFAM: HEPN domain; Nitrite and sulphite reductase 4Fe-4S domain; Nitrite/Sulfite reductase ferredoxin-like half domain; COGs: COG0007 Uroporphyrinogen-III methylase; InterPro IPR006366:IPR000878; KEGG: dfe:Dfer_2619 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase; PRIAM: Uroporphyrinogen-III C-methyltransferase; SPTR: Uroporphyrin-III C-methyltransferase; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; ferredoxin--nitrite reductase 2925532..2927703 Runella slithyformis DSM 19594 10871066 YP_004656072.1 CDS Runsl_2536 NC_015703.1 2927717 2928460 D PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase; COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2; InterPro IPR000594:IPR007901:IPR001763; KEGG: rxy:Rxyl_0743 UBA/ThiF-type NAD/FAD binding fold; PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; SMART: Rhodanese-like; SPTR: Molybdopterin biosynthesis protein; uroporphyrin-III C-methyltransferase 2927717..2928460 Runella slithyformis DSM 19594 10871067 YP_004656073.1 CDS Runsl_2537 NC_015703.1 2928646 2929731 D PFAM: MoeZ/MoeB domain; Rhodanese-like domain; ThiF family; COGs: COG4121 conserved hypothetical protein; InterPro IPR008471; KEGG: sli:Slin_4488 hypothetical protein; PFAM: Protein of unknown function DUF752; SPTR: uncharacterized protein; UBA/THIF-type NAD/FAD binding protein 2928646..2929731 Runella slithyformis DSM 19594 10871068 YP_004656074.1 CDS Runsl_2538 NC_015703.1 2929735 2930430 D PFAM: Protein of unknown function (DUF752); KEGG: aex:Astex_3689 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2929735..2930430 Runella slithyformis DSM 19594 10871069 YP_004656075.1 CDS Runsl_2539 NC_015703.1 2930487 2931152 D hypothetical protein 2930487..2931152 Runella slithyformis DSM 19594 10871070 YP_004656076.1 CDS Runsl_2540 NC_015703.1 2931188 2931679 R COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_1972 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; hypothetical protein complement(2931188..2931679) Runella slithyformis DSM 19594 10871071 YP_004656077.1 CDS Runsl_2541 NC_015703.1 2931722 2932486 R PFAM: short chain dehydrogenase; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076:IPR017941; KEGG: dfe:Dfer_2187 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] iron-sulphur domain; SPTR: FAD dependent oxidoreductase; 3-oxoacyl-ACP reductase complement(2931722..2932486) Runella slithyformis DSM 19594 10871072 YP_004656078.1 CDS Runsl_2542 NC_015703.1 2932533 2934158 R PFAM: Rieske [2Fe-2S] domain; FAD dependent oxidoreductase; Prodigal; manually curated; FAD dependent oxidoreductase complement(2932533..2934158) Runella slithyformis DSM 19594 10871073 YP_004656079.1 CDS Runsl_2546 NC_015703.1 2936503 2937534 R PFAM: Acyl-protein synthetase, LuxE; KEGG: sli:Slin_3617 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2936503..2937534) Runella slithyformis DSM 19594 10871077 YP_004656080.1 CDS Runsl_2547 NC_015703.1 2937577 2938098 D KEGG: sli:Slin_5308 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2937577..2938098 Runella slithyformis DSM 19594 10871078 YP_004656081.1 CDS Runsl_2548 NC_015703.1 2938168 2939112 D hypothetical protein 2938168..2939112 Runella slithyformis DSM 19594 10871079 YP_004656082.1 CDS Runsl_2549 NC_015703.1 2939112 2939231 D KEGG: sli:Slin_5950 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2939112..2939231 Runella slithyformis DSM 19594 10871080 YP_004656083.1 CDS Runsl_2550 NC_015703.1 2939175 2940347 R KEGG: sli:Slin_5949 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2939175..2940347) Runella slithyformis DSM 19594 10871081 YP_004656084.1 CDS Runsl_2551 NC_015703.1 2940466 2943828 R PFAM: Peptidase C25; KEGG: sli:Slin_5948 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2940466..2943828) Runella slithyformis DSM 19594 10871082 YP_004656085.1 CDS Runsl_2552 NC_015703.1 2943970 2944617 R PFAM: SprT-like family; KEGG: sli:Slin_2296 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(2943970..2944617) Runella slithyformis DSM 19594 10871083 YP_004656086.1 CDS Runsl_2553 NC_015703.1 2945008 2945484 D COGs: COG0740 Protease subunit of ATP-dependent Clp protease; HAMAP: ATP-dependent Clp protease proteolytic subunit; InterPro IPR001907; KEGG: dfe:Dfer_4574 endopeptidase Clp; PFAM: Peptidase S14, ClpP; PRIAM: Endopeptidase Clp; SPTR: ATP-dependent Clp protease proteolytic subunit; hypothetical protein 2945008..2945484 Runella slithyformis DSM 19594 10871084 YP_004656087.1 CDS Runsl_2554 NC_015703.1 2945858 2946532 D PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; COGs: COG1293 RNA-binding protein homologous to eukaryotic snRNP; InterPro IPR008616:IPR008532; KEGG: sli:Slin_0279 hypothetical protein; PFAM: Protein of unknown function DUF814; Fibronectin-binding A, N-terminal; SPTR: uncharacterized protein; ATP-dependent Clp protease proteolytic subunit 2945858..2946532 Runella slithyformis DSM 19594 10871085 YP_004656088.1 CDS Runsl_2555 NC_015703.1 2946642 2948249 D PFAM: Domain of unknown function (DUF814); Fibronectin-binding protein A N-terminus (FbpA); COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: dfe:Dfer_2601 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; hypothetical protein 2946642..2948249 Runella slithyformis DSM 19594 10871086 YP_004656089.1 CDS Runsl_2556 NC_015703.1 2948236 2949396 R PFAM: Bacterial regulatory proteins, lacI family; family; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: fbc:FB2170_09056 NADH-dependent dihydrogenase; PFAM: Oxidoreductase, N-terminal; SPTR: NADH-dependent dehydrogenase; LacI family transcriptional regulator complement(2948236..2949396) Runella slithyformis DSM 19594 10871087 YP_004656090.1 CDS Runsl_2557 NC_015703.1 2949782 2951188 D PFAM: Oxidoreductase, NAD-binding Rossmann fold; oxidoreductase domain-containing protein 2949782..2951188 Runella slithyformis DSM 19594 10871088 YP_004656091.1 CDS Runsl_2558 NC_015703.1 2951161 2951280 R COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311; KEGG: dfe:Dfer_0267 oxidoreductase domain protein; SPTR: Oxidoreductase domain protein; hypothetical protein complement(2951161..2951280) Runella slithyformis DSM 19594 10871089 YP_004656092.1 CDS Runsl_2559 NC_015703.1 2951321 2952487 D KEGG: psl:Psta_2085 hypothetical protein; SPTR: uncharacterized protein; oxidoreductase domain-containing protein 2951321..2952487 Runella slithyformis DSM 19594 10871090 YP_004656093.1 CDS Runsl_2560 NC_015703.1 2952640 2953536 D COGs: COG1312 D-mannonate dehydratase; HAMAP: Mannonate dehydratase; InterPro IPR004628; KEGG: sli:Slin_6196 mannonate dehydratase; PFAM: Mannonate dehydratase; PRIAM: Mannonate dehydratase; SPTR: Mannonate dehydratase 2; TIGRFAM: Mannonate dehydratase; hypothetical protein 2952640..2953536 Runella slithyformis DSM 19594 10871091 YP_004656094.1 CDS Runsl_2561 NC_015703.1 2953626 2954837 D PFAM: D-mannonate dehydratase (UxuA); TIGRFAM: mannonate dehydratase; KEGG: lby:Lbys_0121 hypothetical protein; SPTR: uncharacterized protein; mannonate dehydratase 2953626..2954837 Runella slithyformis DSM 19594 10871092 YP_004656095.1 CDS Runsl_2562 NC_015703.1 2954907 2955347 D PFAM: Transposase IS200 like; COGs: COG3661 Alpha-glucuronidase; InterPro IPR005154:IPR011100:IPR011099; KEGG: sli:Slin_6197 alpha-glucuronidase; PFAM: Glycosyl hydrolase 67 middle; Glycoside hydrolase 67; Glycosyl hydrolase 67, C-terminal; PRIAM: Alpha-glucuronidase; SPTR: Alpha-glucuronidase; hypothetical protein 2954907..2955347 Runella slithyformis DSM 19594 10871093 YP_004656096.1 CDS Runsl_2563 NC_015703.1 2955539 2957632 D PFAM: Glycosyl hydrolase 67 C-terminus; Glycosyl hydrolase 67 middle domain; Glycosyl hydrolase 67 N-terminus; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_6198 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; alpha-glucuronidase 2955539..2957632 Runella slithyformis DSM 19594 10871094 YP_004656097.1 CDS Runsl_2564 NC_015703.1 2957629 2958432 D PFAM: short chain dehydrogenase; InterPro IPR013740; KEGG: sli:Slin_1863 redoxin; PFAM: Redoxin; SPTR: Redoxin domain protein; 3-oxoacyl-ACP reductase 2957629..2958432 Runella slithyformis DSM 19594 10871095 YP_004656098.1 CDS Runsl_2565 NC_015703.1 2958507 2959781 D PFAM: Redoxin; KEGG: cpi:Cpin_2806 hypothetical protein; SPTR: WD40 domain protein beta Propeller; redoxin domain-containing protein 2958507..2959781 Runella slithyformis DSM 19594 10871096 YP_004656099.1 CDS Runsl_2566 NC_015703.1 2959809 2960438 D KEGG: ppn:Palpr_0675 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2959809..2960438 Runella slithyformis DSM 19594 10871097 YP_004656100.1 CDS Runsl_2567 NC_015703.1 2960591 2962129 D COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR006311:IPR001466; KEGG: sli:Slin_2368 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; hypothetical protein 2960591..2962129 Runella slithyformis DSM 19594 10871098 YP_004656101.1 CDS Runsl_2568 NC_015703.1 2962372 2963925 D PFAM: Beta-lactamase; InterPro IPR013096; KEGG: sli:Slin_3322 cupin; PFAM: Cupin 2, conserved barrel; SPTR: Cupin 2 conserved barrel domain protein; beta-lactamase 2962372..2963925 Runella slithyformis DSM 19594 10871099 YP_004656102.1 CDS Runsl_2569 NC_015703.1 2963952 2964743 D PFAM: Cupin domain; COGs: COG2730 Endoglucanase; InterPro IPR006311:IPR001547; KEGG: sli:Slin_3338 glycoside hydrolase 5; PFAM: Glycoside hydrolase, family 5; SPTR: Glycoside hydrolase 5; cupin 2963952..2964743 Runella slithyformis DSM 19594 10871100 YP_004656103.1 CDS Runsl_2570 NC_015703.1 2964905 2966047 D PFAM: Cellulase (glycosyl hydrolase 5); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; InterPro IPR013737:IPR008902; KEGG: sli:Slin_1249 alpha-L-rhamnosidase; PFAM: Bacterial alpha-L-rhamnosidase; Bacterial alpha-L-rhamnosidase N-terminal; SPTR: Alpha-L-rhamnosidase; glycoside hydrolase 2964905..2966047 Runella slithyformis DSM 19594 10871101 YP_004656104.1 CDS Runsl_2571 NC_015703.1 2966210 2969053 D PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain; COGs: COG2273 Beta-glucanase/Beta-glucan synthetase; InterPro IPR000757; KEGG: plu:plu3518 hypothetical protein; PFAM: Glycoside hydrolase, family 16; SPTR: Glycoside hydrolase 16; alpha-L-rhamnosidase 2966210..2969053 Runella slithyformis DSM 19594 10871102 YP_004656105.1 CDS Runsl_2572 NC_015703.1 2969232 2970017 D PFAM: Glycosyl hydrolases family 16; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: fbc:FB2170_05940 sulfatase; PFAM: Sulfatase; SPTR: sulfatase; glycoside hydrolase 2969232..2970017 Runella slithyformis DSM 19594 10871103 YP_004656106.1 CDS Runsl_2573 NC_015703.1 2970020 2971606 D PFAM: Sulfatase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917:IPR008902; KEGG: phe:Phep_3974 alpha-L-rhamnosidase; PFAM: Bacterial alpha-L-rhamnosidase; Sulfatase; PRIAM: Arylsulfatase; SPTR: Mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase); sulfatase 2970020..2971606 Runella slithyformis DSM 19594 10871104 YP_004656109.1 CDS Runsl_2576 NC_015703.1 2976339 2976452 D InterPro IPR014922; KEGG: kko:Kkor_1113 hypothetical protein; PFAM: Protein of unknown function DUF1801; SPTR: uncharacterized protein; hypothetical protein 2976339..2976452 Runella slithyformis DSM 19594 10871107 YP_004656110.1 CDS Runsl_2577 NC_015703.1 2976565 2976981 D PFAM: Domain of unknown function (DU1801); COGs: COG3938 Proline racemase; InterPro IPR008794; KEGG: cpi:Cpin_5572 hydroxyproline-2-epimerase; PFAM: Proline racemase; PRIAM: 4-hydroxyproline epimerase; SPTR: Proline racemase; hypothetical protein 2976565..2976981 Runella slithyformis DSM 19594 10871108 YP_004656111.1 CDS Runsl_2578 NC_015703.1 2977037 2978041 D PFAM: Proline racemase; KEGG: pca:Pcar_0295 restriction endonuclease; SPTR: uncharacterized protein; 4-hydroxyproline epimerase 2977037..2978041 Runella slithyformis DSM 19594 10871109 YP_004656112.1 CDS Runsl_2579 NC_015703.1 2978068 2978499 D restriction endonuclease 2978068..2978499 Runella slithyformis DSM 19594 10871110 YP_004656113.1 CDS Runsl_2580 NC_015703.1 2978990 2979313 D KEGG: shg:Sph21_3755 rubredoxin-type Fe(Cys)4 protein; SPTR: Rubredoxin; hypothetical protein 2978990..2979313 Runella slithyformis DSM 19594 10871111 YP_004656114.1 CDS Runsl_2581 NC_015703.1 2979882 2981261 R COGs: COG3383 Uncharacterized anaerobic dehydrogenase; InterProIPR006963:IPR006656:IPR006657:IPR013027:IPR 007419; KEGG: dfe:Dfer_2062 molybdopterin oxidoreductase; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding region; PRIAM: Nitrate reductase., Nitrite reductase (NAD(P)H); SPTR: Molybdopterin oxidoreductase; rubredoxin-type Fe(Cys)4 protein complement(2979882..2981261) Runella slithyformis DSM 19594 10871112 YP_004656115.1 CDS Runsl_2582 NC_015703.1 2981440 2984970 R PFAM: Pyridine nucleotide-disulphide oxidoreductase; Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; BFD-like [2Fe-2S] binding domain; Molybdopterin oxidoreductase Fe4S4 domain; COGs: COG2223 Nitrate/nitrite transporter; InterPro IPR011701; KEGG: sli:Slin_5402 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; nitrate reductase/nitrite reductase complement(2981440..2984970) Runella slithyformis DSM 19594 10871113 YP_004656116.1 CDS Runsl_2583 NC_015703.1 2985002 2986297 R PFAM: Major Facilitator Superfamily; TIGRFAM: nitrite extrusion protein (nitrite facilitator); KEGG: sli:Slin_5403 hypothetical protein; SPTR: uncharacterized protein; major facilitator superfamily protein complement(2985002..2986297) Runella slithyformis DSM 19594 10871114 YP_004656117.1 CDS Runsl_2584 NC_015703.1 2986327 2987862 R COGs: COG0547 Anthranilate phosphoribosyltransferase; KEGG: sli:Slin_5627 anthranilate phosphoribosyltransferase-like protein; SPTR: Anthranilate phosphoribosyltransferase-like protein; hypothetical protein complement(2986327..2987862) Runella slithyformis DSM 19594 10871115 YP_004656118.1 CDS Runsl_2585 NC_015703.1 2988373 2989647 D COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; HAMAP: tRNA-specific 2-thiouridylase; InterPro IPR004506:IPR018318; KEGG: dfe:Dfer_2662 tRNA-specific 2-thiouridylase MnmA; PFAM: tRNA methyl transferase-like; SPTR: tRNA-specific 2-thiouridylase mnmA; TIGRFAM: tRNA-specific 2-thiouridylase; anthranilate phosphoribosyltransferase-like protein 2988373..2989647 Runella slithyformis DSM 19594 10871116 YP_004656119.1 CDS Runsl_2586 NC_015703.1 2989764 2990867 R PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: dfe:Dfer_2633 hypothetical protein; SPTR: uncharacterized protein; tRNA-specific 2-thiouridylase mnmA complement(2989764..2990867) Runella slithyformis DSM 19594 10871117 YP_004656120.1 CDS Runsl_2587 NC_015703.1 2991722 2992108 D KEGG: sli:Slin_4775 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2991722..2992108 Runella slithyformis DSM 19594 10871118 YP_004656121.1 CDS Runsl_2588 NC_015703.1 2992144 2992536 D PFAM: Protein of unknown function (DUF3244); COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: fbc:FB2170_14138 hypothetical protein; PFAM: Signal transduction histidine kinase, internal region; SPTR: membrane protein; hypothetical protein 2992144..2992536 Runella slithyformis DSM 19594 10871119 YP_004656122.1 CDS Runsl_2589 NC_015703.1 2992574 2993731 D PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_2868 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; signal transduction histidine kinase 2992574..2993731 Runella slithyformis DSM 19594 10871120 YP_004656123.1 CDS Runsl_2590 NC_015703.1 2993771 2994526 D PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG2935 arginyl-tRNA:protein arginylyltransferase; InterPro IPR007472; KEGG: lby:Lbys_1323 arginine-tRNA-protein transferase domain protein; PFAM: Arginine-tRNA-protein transferase, C-terminal; SPTR: Arginine-tRNA-protein transferase domain protein; LytTR family two component transcriptional regulator 2993771..2994526 Runella slithyformis DSM 19594 10871121 YP_004656124.1 CDS Runsl_2591 NC_015703.1 2994530 2995612 R PFAM: Arginine-tRNA-protein transferase, C terminus; COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR006411:IPR000771; KEGG: sli:Slin_0254 fructose-bisphosphate aldolase, class II; PFAM: Ketose-bisphosphate aldolase, class-II; PRIAM: Fructose-bisphosphate aldolase; SPTR: Fructose-bisphosphate aldolase, class II; TIGRFAM: Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype; Ketose-bisphosphate aldolase, class-II; arginine-tRNA-protein transferase domain-containing protein complement(2994530..2995612) Runella slithyformis DSM 19594 10871122 YP_004656125.1 CDS Runsl_2592 NC_015703.1 2995703 2996782 R PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases; fructose-bisphosphate aldolase, class II, yeast/E. coli subtype; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650; KEGG: dfe:Dfer_3741 peptidase M20; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: Beta-Ala-His dipeptidase; SPTR: Peptidase M20; fructose-bisphosphate aldolase complement(2995703..2996782) Runella slithyformis DSM 19594 10871123 YP_004656126.1 CDS Runsl_2593 NC_015703.1 2997103 2998467 R PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; KEGG: zpr:ZPR_2888 hypothetical protein; SPTR: uncharacterized protein; beta-Ala-His dipeptidase complement(2997103..2998467) Runella slithyformis DSM 19594 10871124 YP_004656127.1 CDS Runsl_2594 NC_015703.1 2998577 2999524 D KEGG: fjo:Fjoh_4428 glycoside hydrolase; SPTR: Glycosyl hydrolase 65; hypothetical protein 2998577..2999524 Runella slithyformis DSM 19594 10871125 YP_004656128.1 CDS Runsl_2595 NC_015703.1 2999635 2999955 D hypothetical protein 2999635..2999955 Runella slithyformis DSM 19594 10871126 YP_004656129.1 CDS Runsl_2596 NC_015703.1 3000571 3000744 D KEGG: cyn:Cyan7425_2020 UDP-galactopyranose mutase; SPTR: UDP-galactopyranose mutase; hypothetical protein 3000571..3000744 Runella slithyformis DSM 19594 10871127 YP_004656130.1 CDS Runsl_2597 NC_015703.1 3000982 3002136 D COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: cpi:Cpin_1791 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; manually curated; UDP-galactopyranose mutase 3000982..3002136 Runella slithyformis DSM 19594 10871128 YP_004656131.1 CDS Runsl_2598 NC_015703.1 3002271 3002669 R PFAM: Response regulator receiver domain; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterProIPR000014:IPR000673:IPR000780:IPR013767:IPR 013655:IPR003661:IPR003594:IPR001610; KEGG: sli:Slin_3102 signal transduction histidine kinase with CheB and CheR activity; PFAM: ATP-binding region, ATPase-like; PAS fold-3; Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; MCP methyltransferase, CheR-type; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PRIAM: Protein-glutamate methylesterase., Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase, CheR-type; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SPTR: Signal transduction histidine kinase with CheB and CheR activity; TIGRFAM: PAS; response regulator receiver protein complement(3002271..3002669) Runella slithyformis DSM 19594 10871129 YP_004656132.1 CDS Runsl_2599 NC_015703.1 3002885 3006640 D PFAM: CheB methylesterase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; CheR methyltransferase, SAM binding domain; His Kinase A (phosphoacceptor) domain; CheR methyltransferase, all-alpha domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; InterPro IPR000673; KEGG: sli:Slin_3103 CheB methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; PRIAM: Protein-glutamate methylesterase; SPTR: CheB methylesterase; signal transduction histidine kinase with CheB and CheR activity 3002885..3006640 Runella slithyformis DSM 19594 10871130 YP_004656133.1 CDS Runsl_2600 NC_015703.1 3006747 3007781 D PFAM: CheB methylesterase; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: dfe:Dfer_5585 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Estradiol 17-beta-dehydrogenase; SPTR: Probable oxidoreductase (Probable short-chain dehydrogenase); chemotaxis protein CheB 3006747..3007781 Runella slithyformis DSM 19594 10871131 YP_004656134.1 CDS Runsl_2601 NC_015703.1 3008024 3008827 D PFAM: short chain dehydrogenase; COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154:IPR013149; KEGG: fjo:Fjoh_2657 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; SPTR: Alcohol dehydrogenase GroES domain protein; estradiol 17-beta-dehydrogenase 3008024..3008827 Runella slithyformis DSM 19594 10871132 YP_004656135.1 CDS Runsl_2602 NC_015703.1 3009021 3010190 D PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: dfe:Dfer_0898 linoleoyl-CoA desaturase; PFAM: Fatty acid desaturase, type 1; PRIAM: Linoleoyl-CoA desaturase; SPTR: Linoleoyl-CoA desaturase; molecular chaperone GroES 3009021..3010190 Runella slithyformis DSM 19594 10871133 YP_004656136.1 CDS Runsl_2603 NC_015703.1 3010604 3011716 D PFAM: Fatty acid desaturase; COGs: COG3564 conserved hypothetical protein; InterPro IPR008497; KEGG: nwa:Nwat_3004 hypothetical protein; PFAM: Protein of unknown function DUF779; SPTR: uncharacterized protein; Linoleoyl-CoA desaturase 3010604..3011716 Runella slithyformis DSM 19594 10871134 YP_004656137.1 CDS Runsl_2604 NC_015703.1 3011870 3012235 R PFAM: Protein of unknown function (DUF779); COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: dfe:Dfer_0072 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; SPTR: Aldehyde dehydrogenase; hypothetical protein complement(3011870..3012235) Runella slithyformis DSM 19594 10871135 YP_004656138.1 CDS Runsl_2605 NC_015703.1 3012301 3013824 R PFAM: Aldehyde dehydrogenase; aldehyde dehydrogenase complement(3012301..3013824) Runella slithyformis DSM 19594 10871136 YP_004656139.1 CDS Runsl_2606 NC_015703.1 3013883 3013978 R COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: cpi:Cpin_4153 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: transcriptional regulator (AraC/XylS family protein); hypothetical protein complement(3013883..3013978) Runella slithyformis DSM 19594 10871137 YP_004656140.1 CDS Runsl_2607 NC_015703.1 3014060 3014983 D PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-type transcriptional regulator N-terminus; COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; InterPro IPR006148; KEGG: phe:Phep_0774 glucosamine-6-phosphate deaminase; PFAM: Glucosamine/galactosamine-6-phosphate isomerase; PRIAM: Glucosamine-6-phosphate deaminase; SPTR: Glucosamine/galactosamine-6-phosphate isomerase; AraC family transcriptional regulator 3014060..3014983 Runella slithyformis DSM 19594 10871138 YP_004656141.1 CDS Runsl_2608 NC_015703.1 3015053 3015796 R PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; TIGRFAM: glucosamine-6-phosphate isomerase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: dfe:Dfer_3265 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; PRIAM: Alpha-N-acetylgalactosaminidase; SPTR: Oxidoreductase domain protein; glucosamine-6-phosphate deaminase complement(3015053..3015796) Runella slithyformis DSM 19594 10871139 YP_004656142.1 CDS Runsl_2609 NC_015703.1 3015962 3017404 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG0249 Mismatch repair ATPase (MutS family); HAMAP: DNA mismatch repair protein MutS, type 1; InterProIPR005748:IPR007695:IPR007860:IPR007696:IPR 007861:IPR000432; KEGG: sli:Slin_0516 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS, clamp; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; SPTR: DNA mismatch repair protein mutS; TIGRFAM: DNA mismatch repair protein MutS, type 1; alpha-N-acetylgalactosaminidase complement(3015962..3017404) Runella slithyformis DSM 19594 10871140 YP_004656143.1 CDS Runsl_2610 NC_015703.1 3017569 3020274 D PFAM: MutS family domain IV; MutS domain II; MutS domain V; MutS domain I; MutS domain III; TIGRFAM: DNA mismatch repair protein MutS; COGs: COG4886 Leucine-rich repeat (LRR) protein; InterPro IPR001611:IPR003591; KEGG: amr:AM1_2038 leucine-rich repeat-containing protein; PFAM: Leucine-rich repeat; PRIAM: Adenylate cyclase; SPTR: Leucine-rich repeat containing outermembrane protein; DNA mismatch repair protein mutS 3017569..3020274 Runella slithyformis DSM 19594 10871141 YP_004656144.1 CDS Runsl_2611 NC_015703.1 3020310 3023261 D PFAM: Leucine Rich Repeat; manually curated; adenylate cyclase 3020310..3023261 Runella slithyformis DSM 19594 10871142 YP_004656145.1 CDS Runsl_2613 NC_015703.1 3023621 3024868 R PFAM: Bacterial protein of unknown function (DUF894); COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR013096:IPR000005:IPR018060; KEGG: cpi:Cpin_1891 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; Cupin 2, conserved barrel; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; major facilitator superfamily protein complement(3023621..3024868) Runella slithyformis DSM 19594 10871144 YP_004656146.1 CDS Runsl_2614 NC_015703.1 3025062 3025934 R PFAM: Cupin domain; Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1858 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; AraC family transcriptional regulator complement(3025062..3025934) Runella slithyformis DSM 19594 10871145 YP_004656147.1 CDS Runsl_2615 NC_015703.1 3026122 3029250 D PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: shg:Sph21_2862 RagB/SusD domain-containing protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 3026122..3029250 Runella slithyformis DSM 19594 10871146 YP_004656148.1 CDS Runsl_2616 NC_015703.1 3029291 3030820 D PFAM: SusD family; KEGG: dfe:Dfer_1563 hypothetical protein; SPTR: uncharacterized protein; RagB/SusD domain-containing protein 3029291..3030820 Runella slithyformis DSM 19594 10871147 YP_004656149.1 CDS Runsl_2617 NC_015703.1 3030927 3033209 D COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933; KEGG: aca:ACP_1347 Tat pathway signal sequence domain protein; PRIAM: Alpha-L-fucosidase; SMART: Glycoside hydrolase, family 29; SPTR: Tat pathway signal sequence domain protein; hypothetical protein 3030927..3033209 Runella slithyformis DSM 19594 10871148 YP_004656150.1 CDS Runsl_2618 NC_015703.1 3033256 3034929 D PFAM: Alpha-L-fucosidase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sli:Slin_0583 sulfatase; PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: Sulfatase; alpha-L-fucosidase 3033256..3034929 Runella slithyformis DSM 19594 10871149 YP_004656151.1 CDS Runsl_2619 NC_015703.1 3034952 3036463 D PFAM: Sulfatase; COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933; KEGG: bvu:BVU_1046 glycoside hydrolase; PRIAM: Alpha-L-fucosidase; SMART: Glycoside hydrolase, family 29; SPTR: uncharacterized protein; N-acetylgalactosamine-6-sulfatase 3034952..3036463 Runella slithyformis DSM 19594 10871150 YP_004656152.1 CDS Runsl_2620 NC_015703.1 3036518 3037915 D PFAM: Alpha-L-fucosidase; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013342; KEGG: dfe:Dfer_1860 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; SPTR: Mandelate racemase/muconate lactonizing protein; alpha-L-fucosidase 3036518..3037915 Runella slithyformis DSM 19594 10871151 YP_004656153.1 CDS Runsl_2621 NC_015703.1 3037950 3039176 D PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: rca:Rcas_2118 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; mandelate racemase 3037950..3039176 Runella slithyformis DSM 19594 10871152 YP_004656154.1 CDS Runsl_2622 NC_015703.1 3039189 3039953 D PFAM: short chain dehydrogenase; InterPro IPR008000; KEGG: pdi:BDI_0103 hypothetical protein; PFAM: Rhamnose mutarotase; SPTR: uncharacterized protein; 3-oxoacyl-ACP reductase 3039189..3039953 Runella slithyformis DSM 19594 10871153 YP_004656155.1 CDS Runsl_2623 NC_015703.1 3039959 3040315 D PFAM: Domain of unknown function (DUF718); COGs: COG0738 Fucose permease; InterPro IPR005275:IPR005964:IPR011701; KEGG: cpi:Cpin_1994 L-fucose transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: L-fucose transporter; TIGRFAM: Bacterial glucose/galactose transporter; L-fucose permease; hypothetical protein 3039959..3040315 Runella slithyformis DSM 19594 10871154 YP_004656156.1 CDS Runsl_2624 NC_015703.1 3040303 3041547 D PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter; L-fucose:H+ symporter permease; COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933:IPR000421; KEGG: sli:Slin_2796 alpha-L-fucosidase; PFAM: Glycoside hydrolase, family 29; Coagulation factor 5/8 type, C-terminal; SMART: Glycoside hydrolase, family 29; SPTR: Alpha-L-fucosidase; glucose/galactose transporter 3040303..3041547 Runella slithyformis DSM 19594 10871155 YP_004656157.1 CDS Runsl_2625 NC_015703.1 3041563 3043281 D PFAM: F5/8 type C domain; Alpha-L-fucosidase; KEGG: sur:STAUR_2877 hypothetical protein; SPTR: uncharacterized protein; glycoside hydrolase 3041563..3043281 Runella slithyformis DSM 19594 10871156 YP_004656158.1 CDS Runsl_2626 NC_015703.1 3043296 3045890 D PFAM: Glycosyl hydrolase 65 central catalytic domain; KEGG: dfe:Dfer_2146 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3043296..3045890 Runella slithyformis DSM 19594 10871157 YP_004656159.1 CDS Runsl_2627 NC_015703.1 3045891 3048281 D KEGG: pbs:Plabr_1678 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3045891..3048281 Runella slithyformis DSM 19594 10871158 YP_004656160.1 CDS Runsl_2628 NC_015703.1 3048412 3049542 D PFAM: Glycosyl hydrolases family 43; KEGG: pbs:Plabr_1678 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3048412..3049542 Runella slithyformis DSM 19594 10871159 YP_004656161.1 CDS Runsl_2629 NC_015703.1 3049542 3050561 D PFAM: Glycosyl hydrolases family 43; InterPro IPR006104; KEGG: dfe:Dfer_2269 glycoside hydrolase 2 sugar binding; PFAM: Glycoside hydrolase 2, carbohydrate-binding; SPTR: glycosyslhydrolase; hypothetical protein 3049542..3050561 Runella slithyformis DSM 19594 10871160 YP_004656162.1 CDS Runsl_2630 NC_015703.1 3050571 3053516 D COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: sli:Slin_4008 LacI family transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; glycoside hydrolase 3050571..3053516 Runella slithyformis DSM 19594 10871161 YP_004656163.1 CDS Runsl_2631 NC_015703.1 3053529 3054542 R PFAM: Bacterial regulatory proteins, lacI family; family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_2412 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; LacI family transcriptional regulator complement(3053529..3054542) Runella slithyformis DSM 19594 10871162 YP_004656164.1 CDS Runsl_2632 NC_015703.1 3054880 3057945 D PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: sli:Slin_2413 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 3054880..3057945 Runella slithyformis DSM 19594 10871163 YP_004656165.1 CDS Runsl_2633 NC_015703.1 3057976 3059406 D PFAM: SusD family; KEGG: dfe:Dfer_2604 hypothetical protein; SPTR: uncharacterized protein; RagB/SusD domain-containing protein 3057976..3059406 Runella slithyformis DSM 19594 10871164 YP_004656166.1 CDS Runsl_2634 NC_015703.1 3059426 3060631 D InterPro IPR002218; KEGG: dfe:Dfer_2605 pyridine nucleotide-disulphide oxidoreductase; PFAM: Glucose-inhibited division protein A-related; SPTR: pyridine nucleotide-disulphide oxidoreductase; hypothetical protein 3059426..3060631 Runella slithyformis DSM 19594 10871165 YP_004656167.1 CDS Runsl_2635 NC_015703.1 3060638 3062440 D PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: dfe:Dfer_2606 ApbE family lipoprotein; PFAM: ApbE-like lipoprotein; SPTR: ApbE family lipoprotein; glucose-inhibited division protein A 3060638..3062440 Runella slithyformis DSM 19594 10871166 YP_004656168.1 CDS Runsl_2636 NC_015703.1 3062488 3063477 D PFAM: ApbE family; KEGG: sli:Slin_2422 hypothetical protein; SPTR: uncharacterized protein; ApbE family lipoprotein 3062488..3063477 Runella slithyformis DSM 19594 10871167 YP_004656169.1 CDS Runsl_2637 NC_015703.1 3063519 3065423 D PFAM: N-terminal ig-like domain of cellulase; KEGG: sli:Slin_2414 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3063519..3065423 Runella slithyformis DSM 19594 10871168 YP_004656170.1 CDS Runsl_2638 NC_015703.1 3065484 3066557 D PFAM: Glycosyl hydrolases family 43; KEGG: sli:Slin_2415 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3065484..3066557 Runella slithyformis DSM 19594 10871169 YP_004656171.1 CDS Runsl_2639 NC_015703.1 3066607 3069117 D COGs: COG0591 Na+/proline symporter; InterPro IPR019900:IPR001734; KEGG: dfe:Dfer_2608 SSS sodium solute transporter superfamily; PFAM: Sodium/solute symporter; SPTR: SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup; hypothetical protein 3066607..3069117 Runella slithyformis DSM 19594 10871170 YP_004656172.1 CDS Runsl_2640 NC_015703.1 3069469 3071178 D PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006102:IPR006103:IPR001547; KEGG: sli:Slin_2419 beta-galactosidase; PFAM: Glycoside hydrolase 2, carbohydrate-binding; Glycoside hydrolase 2, immunoglobulin-like beta-sandwich; Glycoside hydrolase 2, TIM barrel; Glycoside hydrolase, family 5; PRIAM: Beta-glucuronidase; SPTR: Beta-galactosidase; sodium solute transporter superfamily protein 3069469..3071178 Runella slithyformis DSM 19594 10871171 YP_004656173.1 CDS Runsl_2641 NC_015703.1 3071482 3073491 D PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; InterPro IPR003953; KEGG: sli:Slin_2420 hypothetical protein; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; SPTR: uncharacterized protein; beta-glucuronidase 3071482..3073491 Runella slithyformis DSM 19594 10871172 YP_004656174.1 CDS Runsl_2642 NC_015703.1 3073621 3075972 D PFAM: FAD binding domain; COGs: COG3652 outer membrane protein; KEGG: dfe:Dfer_3182 outer membrane protein-like protein; SPTR: Outer membrane protein-like protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3073621..3075972 Runella slithyformis DSM 19594 10871173 YP_004656175.1 CDS Runsl_2643 NC_015703.1 3076113 3076688 D COGs: COG4876 conserved hypothetical protein; InterPro IPR018691; KEGG: gym:GYMC10_2045 protein of unknown function DUF2188; PFAM: Protein of unknown function DUF2188; SPTR: uncharacterized protein; hypothetical protein 3076113..3076688 Runella slithyformis DSM 19594 10871174 YP_004656176.1 CDS Runsl_2644 NC_015703.1 3076729 3076932 D PFAM: Uncharacterized protein conserved in bacteria (DUF2188); KEGG: chu:CHU_2068 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3076729..3076932 Runella slithyformis DSM 19594 10871175 YP_004656177.1 CDS Runsl_2645 NC_015703.1 3077230 3077766 R KEGG: mtt:Ftrac_2093 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3077230..3077766) Runella slithyformis DSM 19594 10871176 YP_004656178.1 CDS Runsl_2646 NC_015703.1 3078119 3078541 D COGs: COG0263 Glutamate 5-kinase; InterPro IPR005715:IPR001048:IPR002478; KEGG: sli:Slin_0426 glutamate 5-kinase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase; SMART: Pseudouridine synthase/archaeosine transglycosylase; SPTR: Glutamate 5-kinase; TIGRFAM: Glutamate 5-kinase, ProB-related; hypothetical protein 3078119..3078541 Runella slithyformis DSM 19594 10871177 YP_004656179.1 CDS Runsl_2647 NC_015703.1 3078708 3079739 D PFAM: PUA domain; Amino acid kinase; TIGRFAM: glutamate 5-kinase; COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: sli:Slin_5151 heat shock protein HSP20; PFAM: Heat shock protein Hsp20; SPTR: Heat shock protein Hsp20; glutamate 5-kinase 3078708..3079739 Runella slithyformis DSM 19594 10871178 YP_004656180.1 CDS Runsl_2648 NC_015703.1 3079878 3080309 R PFAM: Hsp20/alpha crystallin family; InterPro IPR010432; KEGG: rci:RCIX2340 hypothetical protein; PFAM: RDD; SPTR: uncharacterized protein; heat shock protein Hsp20 complement(3079878..3080309) Runella slithyformis DSM 19594 10871179 YP_004656181.1 CDS Runsl_2649 NC_015703.1 3080776 3081120 D PFAM: RDD family; KEGG: pca:Pcar_0371 hypothetical protein; SPTR: uncharacterized protein; RDD domain-containing protein 3080776..3081120 Runella slithyformis DSM 19594 10871180 YP_004656182.1 CDS Runsl_2650 NC_015703.1 3081255 3081632 D PFAM: Protein of unknown function (DUF2752); COGs: COG2008 Threonine aldolase; InterPro IPR001597; KEGG: dfe:Dfer_4745 threonine aldolase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase; PRIAM: Threonine aldolase; SPTR: Threonine aldolase; hypothetical protein 3081255..3081632 Runella slithyformis DSM 19594 10871181 YP_004656183.1 CDS Runsl_2651 NC_015703.1 3081713 3082723 D PFAM: Beta-eliminating lyase; threonine aldolase 3081713..3082723 Runella slithyformis DSM 19594 10871182 YP_004656184.1 CDS Runsl_2652 NC_015703.1 3083040 3084323 R COGs: COG2928 conserved hypothetical protein; InterPro IPR007462; KEGG: dfe:Dfer_5011 protein of unknown function DUF502; PFAM: Protein of unknown function DUF502; SPTR: uncharacterized protein; hypothetical protein complement(3083040..3084323) Runella slithyformis DSM 19594 10871183 YP_004656185.1 CDS Runsl_2653 NC_015703.1 3084801 3085391 D PFAM: Protein of unknown function (DUF502); COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018481; KEGG: dfe:Dfer_0249 glycosyl transferase 4; PFAM: Glycosyl transferase, family 4, conserved region; SPTR: Glycosyl transferase 4; hypothetical protein 3084801..3085391 Runella slithyformis DSM 19594 10871184 YP_004656186.1 CDS Runsl_2654 NC_015703.1 3085422 3086636 R PFAM: Glycosyl transferase 4; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_2592 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; glycosyl transferase family protein complement(3085422..3086636) Runella slithyformis DSM 19594 10871185 YP_004656187.1 CDS Runsl_2655 NC_015703.1 3086738 3087502 R PFAM: Glycosyl transferase 2; COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); KEGG: sli:Slin_2591 colanic acid biosynthesis acetyltransferase WcaF; SPTR: colanic acid biosynthesis acetyltransferase WcaF; family 2 glycosyl transferase complement(3086738..3087502) Runella slithyformis DSM 19594 10871186 YP_004656188.1 CDS Runsl_2656 NC_015703.1 3087588 3088163 R COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_0252 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; colanic acid biosynthesis acetyltransferase WcaF complement(3087588..3088163) Runella slithyformis DSM 19594 10871187 YP_004656189.1 CDS Runsl_2657 NC_015703.1 3088105 3089040 R PFAM: Glycosyl transferase 2; COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; InterPro IPR006264:IPR001986; KEGG: dfe:Dfer_5009 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; PRIAM: 3-phosphoshikimate 1-carboxyvinyltransferase; SPTR: 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; family 2 glycosyl transferase complement(3088105..3089040) Runella slithyformis DSM 19594 10871188 YP_004656190.1 CDS Runsl_2658 NC_015703.1 3089217 3090452 D PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR001140:IPR003439:IPR003593; KEGG: dfe:Dfer_0068 ABC transporter related; PFAM: ABC transporter-like; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; 3-phosphoshikimate 1-carboxyvinyltransferase 3089217..3090452 Runella slithyformis DSM 19594 10871189 YP_004656191.1 CDS Runsl_2659 NC_015703.1 3090576 3092345 D PFAM: ABC transporter; ABC transporter transmembrane region; COGs: COG3568 Metal-dependent hydrolase; InterPro IPR005135; KEGG: sli:Slin_4762 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; xenobiotic-transporting ATPase 3090576..3092345 Runella slithyformis DSM 19594 10871190 YP_004656192.1 CDS Runsl_2660 NC_015703.1 3092411 3093253 R PFAM: Endonuclease/Exonuclease/phosphatase; InterPro IPR012944; KEGG: sli:Slin_4761 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; hypothetical protein complement(3092411..3093253) Runella slithyformis DSM 19594 10871191 YP_004656193.1 CDS Runsl_2661 NC_015703.1 3093293 3095065 R PFAM: SusD family; InterPro IPR012910:IPR000531; KEGG: sli:Slin_4760 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; RagB/SusD domain-containing protein complement(3093293..3095065) Runella slithyformis DSM 19594 10871192 YP_004656194.1 CDS Runsl_2662 NC_015703.1 3095087 3098626 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: sli:Slin_5418 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; TonB-dependent receptor plug complement(3095087..3098626) Runella slithyformis DSM 19594 10871193 YP_004656195.1 CDS Runsl_2663 NC_015703.1 3098845 3099909 R PFAM: FecR protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_1462 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; anti-FecI sigma factor FecR complement(3098845..3099909) Runella slithyformis DSM 19594 10871194 YP_004656196.1 CDS Runsl_2664 NC_015703.1 3100012 3100626 R PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650; KEGG: mxa:MXAN_2289 hypothetical protein; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: Gly-Xaa carboxypeptidase; SPTR: Peptidase, M20E (Gly-X carboxypeptidase) subfamily; ECF subfamily RNA polymerase sigma-24 subunit complement(3100012..3100626) Runella slithyformis DSM 19594 10871195 YP_004656197.1 CDS Runsl_2665 NC_015703.1 3100734 3102191 R PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; COGs: COG0262 Dihydrofolate reductase; InterPro IPR001796; KEGG: sli:Slin_1051 dihydrofolate reductase; PFAM: Dihydrofolate reductase region; PRIAM: Dihydrofolate reductase; SPTR: Dihydrofolate reductase; Gly-Xaa carboxypeptidase complement(3100734..3102191) Runella slithyformis DSM 19594 10871196 YP_004656198.1 CDS Runsl_2666 NC_015703.1 3102311 3102805 R PFAM: Dihydrofolate reductase; KEGG: bfo:BRAFLDRAFT_89036 hypothetical protein; SPTR: hemagglutinin-related protein; dihydrofolate reductase complement(3102311..3102805) Runella slithyformis DSM 19594 10871197 YP_004656199.1 CDS Runsl_2667 NC_015703.1 3103061 3103765 R InterPro IPR003088; KEGG: dfe:Dfer_3236 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I; hypothetical protein complement(3103061..3103765) Runella slithyformis DSM 19594 10871198 YP_004656200.1 CDS Runsl_2668 NC_015703.1 3104090 3106021 R PFAM: Cytochrome c; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: sli:Slin_2896 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; cytochrome c class I complement(3104090..3106021) Runella slithyformis DSM 19594 10871199 YP_004656201.1 CDS Runsl_2669 NC_015703.1 3106024 3106608 R PFAM: Protein of unknown function (DUF820); InterPro IPR006342; KEGG: dfe:Dfer_4789 methyltransferase FkbM family; SPTR: Methyltransferase FkbM family; TIGRFAM: Methyltransferase FkbM; hypothetical protein complement(3106024..3106608) Runella slithyformis DSM 19594 10871200 YP_004656202.1 CDS Runsl_2670 NC_015703.1 3106673 3107479 D TIGRFAM: methyltransferase, FkbM family; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dfe:Dfer_4786 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; FkbM family methyltransferase 3106673..3107479 Runella slithyformis DSM 19594 10871201 YP_004656203.1 CDS Runsl_2671 NC_015703.1 3107476 3108729 D PFAM: Glycosyl transferases group 1; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: dfe:Dfer_2713 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; group 1 glycosyl transferase 3107476..3108729 Runella slithyformis DSM 19594 10871202 YP_004656204.1 CDS Runsl_2672 NC_015703.1 3108837 3109646 R PFAM: short chain dehydrogenase; KEGG: dfe:Dfer_3999 hypothetical protein; SPTR: uncharacterized protein; 3-oxoacyl-ACP reductase complement(3108837..3109646) Runella slithyformis DSM 19594 10871203 YP_004656205.1 CDS Runsl_2673 NC_015703.1 3109725 3110708 D InterPro IPR003675; KEGG: cao:Celal_3410 abortive infection protein; PFAM: Abortive infection protein; SPTR: Abortive infection protein; hypothetical protein 3109725..3110708 Runella slithyformis DSM 19594 10871204 YP_004656206.1 CDS Runsl_2674 NC_015703.1 3110698 3111567 R PFAM: CAAX amino terminal protease; COGs: COG4420 membrane protein; InterPro IPR010406; KEGG: cpi:Cpin_1225 hypothetical protein; PFAM: Protein of unknown function DUF1003; SPTR: uncharacterized protein; manually curated; abortive infection protein complement(3110698..3111567) Runella slithyformis DSM 19594 10871205 YP_004656207.1 CDS Runsl_2675 NC_015703.1 3112331 3112852 D PFAM: Protein of unknown function (DUF1003); COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR011904:IPR000873; KEGG: sli:Slin_2894 acetate/CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Acetate--CoA ligase; SPTR: Acetyl-coenzyme A synthetase; TIGRFAM: Acetate--CoA ligase; hypothetical protein 3112331..3112852 Runella slithyformis DSM 19594 10871206 YP_004656208.1 CDS Runsl_2676 NC_015703.1 3112907 3114796 R PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme; TIGRFAM: acetate--CoA ligase; manually curated; acetate/CoA ligase complement(3112907..3114796) Runella slithyformis DSM 19594 10871207 YP_004656209.1 CDS Runsl_2678 NC_015703.1 3115548 3115772 R COGs: COG2814 Arabinose efflux permease; InterPro IPR005828; KEGG: fjo:Fjoh_1409 major facilitator transporter; PFAM: General substrate transporter; SPTR: Major facilitator superfamily MFS_1; hypothetical protein complement(3115548..3115772) Runella slithyformis DSM 19594 10871209 YP_004656210.1 CDS Runsl_2679 NC_015703.1 3115894 3117465 R PFAM: Sugar (and other) transporter; InterPro IPR000182; KEGG: pbs:Plabr_1279 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; general substrate transporter complement(3115894..3117465) Runella slithyformis DSM 19594 10871210 YP_004656211.1 CDS Runsl_2680 NC_015703.1 3117847 3118263 D PFAM: Acetyltransferase (GNAT) family; SPTR: uncharacterized protein; N-acetyltransferase GCN5 3117847..3118263 Runella slithyformis DSM 19594 10871211 YP_004656212.1 CDS Runsl_2681 NC_015703.1 3118272 3118775 D COGs: COG0628 permease; InterPro IPR002549; KEGG: chu:CHU_2927 permease; PFAM: Uncharacterised protein family UPF0118; SPTR: Permease; hypothetical protein 3118272..3118775 Runella slithyformis DSM 19594 10871212 YP_004656213.1 CDS Runsl_2682 NC_015703.1 3118781 3119899 R PFAM: Domain of unknown function DUF20; COGs: COG3685 conserved hypothetical protein; InterPro IPR010287; KEGG: phe:Phep_1308 hypothetical protein; PFAM: Protein of unknown function DUF892; SPTR: uncharacterized protein; hypothetical protein complement(3118781..3119899) Runella slithyformis DSM 19594 10871213 YP_004656214.1 CDS Runsl_2683 NC_015703.1 3120130 3120657 R PFAM: Domain of unknown function (DUF892); COGs: COG0439 Biotin carboxylase; InterPro IPR004549:IPR005481:IPR005479:IPR005482; KEGG: dfe:Dfer_4148 acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; PRIAM: Biotin carboxylase; SPTR: Acetyl-CoA carboxylase, biotin carboxylase; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; hypothetical protein complement(3120130..3120657) Runella slithyformis DSM 19594 10871214 YP_004656215.1 CDS Runsl_2684 NC_015703.1 3120961 3122304 R PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit; COGs: COG0511 Biotin carboxyl carrier protein; InterPro IPR001249:IPR000089; KEGG: sli:Slin_5246 acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: Biotin/lipoyl attachment; SPTR: Acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: Acetyl-CoA biotin carboxyl carrier; acetyl-CoA carboxylase, biotin carboxylase complement(3120961..3122304) Runella slithyformis DSM 19594 10871215 YP_004656216.1 CDS Runsl_2685 NC_015703.1 3122424 3122936 R PFAM: Biotin-requiring enzyme; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; COGs: COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); HAMAP: Translation elongation factor P; InterPro IPR011768:IPR013185:IPR001059:IPR015365; KEGG: sli:Slin_5247 translation elongation factor P; PFAM: Translation elongation factor, KOW-like; Translation elongation factor P/YeiP, central; Elongation factor P, C-terminal; SPTR: Elongation factor P; TIGRFAM: Translation elongation factor P; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(3122424..3122936) Runella slithyformis DSM 19594 10871216 YP_004656217.1 CDS Runsl_2686 NC_015703.1 3122951 3123514 R PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P; COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); InterPro IPR004655:IPR013751:IPR013747; KEGG: dfe:Dfer_4151 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase I; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase 3 2; TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); elongation factor P complement(3122951..3123514) Runella slithyformis DSM 19594 10871217 YP_004656218.1 CDS Runsl_2687 NC_015703.1 3123634 3124623 R PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; COGs: COG0416 Fatty acid/phospholipid biosynthesis enzyme; HAMAP: Phospholipid biosynthesis protein, PlsX like; InterPro IPR012281:IPR003664; KEGG: dfe:Dfer_4152 fatty acid/phospholipid synthesis protein PlsX; PFAM: Fatty acid synthesis plsX protein; SPTR: Phosphate acyltransferase; TIGRFAM: Phospholipid biosynthesis protein, PlsX like; 3-oxoacyl-ACP synthase complement(3123634..3124623) Runella slithyformis DSM 19594 10871218 YP_004656219.1 CDS Runsl_2688 NC_015703.1 3124723 3125661 R PFAM: Fatty acid synthesis protein; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; HAMAP: Ribosomal protein L32p; InterPro IPR002677; KEGG: dfe:Dfer_4153 ribosomal protein L32; PFAM: Ribosomal protein L32p; SPTR: 50S ribosomal protein L32; TIGRFAM: Ribosomal protein L32p; phosphate acyltransferase complement(3124723..3125661) Runella slithyformis DSM 19594 10871219 YP_004656220.1 CDS Runsl_2689 NC_015703.1 3125812 3126003 R PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; InterPro IPR003772; KEGG: dfe:Dfer_4154 protein of unknown function DUF177; PFAM: Protein of unknown function DUF177; SPTR: uncharacterized protein; 50S ribosomal protein L32 complement(3125812..3126003) Runella slithyformis DSM 19594 10871220 YP_004656221.1 CDS Runsl_2690 NC_015703.1 3126056 3126661 R PFAM: Uncharacterized ACR, COG1399; KEGG: cpi:Cpin_0240 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3126056..3126661) Runella slithyformis DSM 19594 10871221 YP_004656222.1 CDS Runsl_2691 NC_015703.1 3126893 3127576 D InterPro IPR011701; KEGG: sli:Slin_1089 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; hypothetical protein 3126893..3127576 Runella slithyformis DSM 19594 10871222 YP_004656223.1 CDS Runsl_2692 NC_015703.1 3127633 3129096 R PFAM: Major Facilitator Superfamily; COGs: COG4704 conserved hypothetical protein; InterPro IPR018673; KEGG: sli:Slin_1194 hypothetical protein; PFAM: Protein of unknown function DUF2141; SPTR: uncharacterized protein; major facilitator superfamily protein complement(3127633..3129096) Runella slithyformis DSM 19594 10871223 YP_004656224.1 CDS Runsl_2693 NC_015703.1 3129242 3129727 D PFAM: Uncharacterized protein conserved in bacteria (DUF2141); KEGG: cly:Celly_0054 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3129242..3129727 Runella slithyformis DSM 19594 10871224 YP_004656225.1 CDS Runsl_2694 NC_015703.1 3129734 3130279 R PFAM: Protein of unknown function (DUF2911); KEGG: sli:Slin_0961 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3129734..3130279) Runella slithyformis DSM 19594 10871225 YP_004656226.1 CDS Runsl_2695 NC_015703.1 3130333 3132477 R PFAM: Planctomycete cytochrome C; InterPro IPR006311:IPR010869; KEGG: dfe:Dfer_1594 protein of unknown function DUF1501; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein; hypothetical protein complement(3130333..3132477) Runella slithyformis DSM 19594 10871226 YP_004656227.1 CDS Runsl_2696 NC_015703.1 3132534 3133988 R PFAM: Protein of unknown function (DUF1501); InterPro IPR011429:IPR011444; KEGG: dfe:Dfer_1978 protein of unknown function DUF1549; PFAM: Protein of unknown function DUF1549; Cytochrome C, Planctomycete; SPTR: uncharacterized protein; hypothetical protein complement(3132534..3133988) Runella slithyformis DSM 19594 10871227 YP_004656228.1 CDS Runsl_2697 NC_015703.1 3134038 3136377 R PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553); COGs: COG1597 Sphingosine kinase; InterPro IPR005218:IPR001206; KEGG: fbc:FB2170_15613 hypothetical protein; PFAM: Diacylglycerol kinase, catalytic region; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00147; hypothetical protein complement(3134038..3136377) Runella slithyformis DSM 19594 10871228 YP_004656229.1 CDS Runsl_2698 NC_015703.1 3136542 3137504 R PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: lipid kinase, YegS/Rv2252/BmrU family; COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: ava:Ava_4167 hypothetical protein; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein; hypothetical protein complement(3136542..3137504) Runella slithyformis DSM 19594 10871229 YP_004656230.1 CDS Runsl_2699 NC_015703.1 3138026 3138259 D PFAM: Protein of unknown function (DUF433); COGs: COG4634 conserved hypothetical protein; KEGG: syf:Synpcc7942_0532 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3138026..3138259 Runella slithyformis DSM 19594 10871230 YP_004656231.1 CDS Runsl_2700 NC_015703.1 3138256 3138609 D PFAM: Protein of unknown function DUF82; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR001140:IPR003439:IPR003593; KEGG: sli:Slin_6513 ABC transporter; PFAM: ABC transporter-like; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; hypothetical protein 3138256..3138609 Runella slithyformis DSM 19594 10871231 YP_004656232.1 CDS Runsl_2701 NC_015703.1 3138610 3140436 D PFAM: ABC transporter; ABC transporter transmembrane region; Prodigal; manually curated; xenobiotic-transporting ATPase 3138610..3140436 Runella slithyformis DSM 19594 10871232 YP_004656233.1 CDS Runsl_2703 NC_015703.1 3141257 3141934 R KEGG: sli:Slin_2244 pirin; SPTR: Pirin-like protein; peptidase M10A and M12B matrixin and adamalysin complement(3141257..3141934) Runella slithyformis DSM 19594 10871234 YP_004656234.1 CDS Runsl_2704 NC_015703.1 3142015 3142713 R PFAM: Pirin; KEGG: smm:Smp_184790 hypothetical protein; SPTR: uncharacterized protein; pirin complement(3142015..3142713) Runella slithyformis DSM 19594 10871235 YP_004656235.1 CDS Runsl_2705 NC_015703.1 3142777 3143289 R COGs: COG3485 Protocatechuate 3 4-dioxygenase beta subunit; InterPro IPR000627; KEGG: sli:Slin_2243 intradiol ring-cleavage dioxygenase; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; SPTR: Intradiol ring-cleavage dioxygenase; hypothetical protein complement(3142777..3143289) Runella slithyformis DSM 19594 10871236 YP_004656236.1 CDS Runsl_2706 NC_015703.1 3143365 3144105 R PFAM: Dioxygenase; COGs: COG0793 Periplasmic protease; InterPro IPR005151; KEGG: ppn:Palpr_1231 hypothetical protein; PFAM: Peptidase S41; SMART: Peptidase S41; SPTR: Conserved repeat domain protein; intradiol ring-cleavage dioxygenase complement(3143365..3144105) Runella slithyformis DSM 19594 10871237 YP_004656237.1 CDS Runsl_2707 NC_015703.1 3144223 3145554 R PFAM: Peptidase S41; peptidase S41 complement(3144223..3145554) Runella slithyformis DSM 19594 10871238 YP_004656238.1 CDS Runsl_2708 NC_015703.1 3145611 3145778 R COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_2242 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; hypothetical protein complement(3145611..3145778) Runella slithyformis DSM 19594 10871239 YP_004656239.1 CDS Runsl_2709 NC_015703.1 3145778 3146485 R PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_2241 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; LytTR family two component transcriptional regulator complement(3145778..3146485) Runella slithyformis DSM 19594 10871240 YP_004656240.1 CDS Runsl_2710 NC_015703.1 3146482 3147588 R PFAM: Histidine kinase; signal transduction histidine kinase complement(3146482..3147588) Runella slithyformis DSM 19594 10871241 YP_004656241.1 CDS Runsl_2711 NC_015703.1 3147628 3147738 D InterPro IPR001387:IPR013096; KEGG: shg:Sph21_0215 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; hypothetical protein 3147628..3147738 Runella slithyformis DSM 19594 10871242 YP_004656242.1 CDS Runsl_2712 NC_015703.1 3147766 3148338 D PFAM: Cupin domain; Helix-turn-helix; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: dfe:Dfer_2670 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28; helix-turn-helix domain-containing protein 3147766..3148338 Runella slithyformis DSM 19594 10871243 YP_004656243.1 CDS Runsl_2713 NC_015703.1 3148392 3149330 D PFAM: Peptidase M28; COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: sli:Slin_1904 L-sorbosone dehydrogenase; SPTR: L-sorbosone dehydrogenase; peptidase M28 3148392..3149330 Runella slithyformis DSM 19594 10871244 YP_004656244.1 CDS Runsl_2714 NC_015703.1 3149488 3150783 D PFAM: Glucose / Sorbosone dehydrogenase; InterPro IPR002781; KEGG: cly:Celly_1275 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: uncharacterized protein; L-sorbosone dehydrogenase 3149488..3150783 Runella slithyformis DSM 19594 10871245 YP_004656245.1 CDS Runsl_2715 NC_015703.1 3150818 3151609 D PFAM: Sulfite exporter TauE/SafE; InterPro IPR000182; KEGG: sli:Slin_2328 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; hypothetical protein 3150818..3151609 Runella slithyformis DSM 19594 10871246 YP_004656246.1 CDS Runsl_2716 NC_015703.1 3151682 3152119 R PFAM: Acetyltransferase (GNAT) family; N-acetyltransferase GCN5 complement(3151682..3152119) Runella slithyformis DSM 19594 10871247 YP_004656247.1 CDS Runsl_2717 NC_015703.1 3152277 3152543 R PFAM: Muconolactone delta-isomerase; COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155; KEGG: pmy:Pmen_2005 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; PRIAM: 12-oxophytodienoate reductase; SPTR: NADH:flavin oxidoreductase/NADH oxidase; hypothetical protein complement(3152277..3152543) Runella slithyformis DSM 19594 10871248 YP_004656248.1 CDS Runsl_2718 NC_015703.1 3152599 3153693 R PFAM: NADH:flavin oxidoreductase / NADH oxidase; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: bbe:BBR47_37980 hypothetical protein; PFAM: Helix-turn-helix, HxlR type; SPTR: uncharacterized protein; 12-oxophytodienoate reductase complement(3152599..3153693) Runella slithyformis DSM 19594 10871249 YP_004656249.1 CDS Runsl_2719 NC_015703.1 3153762 3154118 D PFAM: HxlR-like helix-turn-helix; KEGG: lby:Lbys_3464 hypothetical protein; SPTR: uncharacterized protein; HxlR family transcriptional regulator 3153762..3154118 Runella slithyformis DSM 19594 10871250 YP_004656250.1 CDS Runsl_2720 NC_015703.1 3154198 3154827 R KEGG: gym:GYMC10_3038 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3154198..3154827) Runella slithyformis DSM 19594 10871251 YP_004656251.1 CDS Runsl_2721 NC_015703.1 3155141 3157021 D COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: dfe:Dfer_1399 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; hypothetical protein 3155141..3157021 Runella slithyformis DSM 19594 10871252 YP_004656252.1 CDS Runsl_2722 NC_015703.1 3157255 3158703 D PFAM: Oxidoreductase, NAD-binding Rossmann fold; Prodigal; manually curated; oxidoreductase domain-containing protein 3157255..3158703 Runella slithyformis DSM 19594 10871253 YP_004656253.1 CDS Runsl_2724 NC_015703.1 3159649 3159987 R PFAM: Bacterial regulatory protein, arsR family; KEGG: sli:Slin_5721 hypothetical protein; SPTR: uncharacterized protein; regulatory protein ArsR complement(3159649..3159987) Runella slithyformis DSM 19594 10871255 YP_004656254.1 CDS Runsl_2725 NC_015703.1 3160171 3160512 R KEGG: mtt:Ftrac_1064 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3160171..3160512) Runella slithyformis DSM 19594 10871256 YP_004656255.1 CDS Runsl_2726 NC_015703.1 3160520 3160942 R KEGG: sli:Slin_5723 TetR family transcriptional regulator; SPTR: Transcriptional regulator, TetR family; hypothetical protein complement(3160520..3160942) Runella slithyformis DSM 19594 10871257 YP_004656256.1 CDS Runsl_2727 NC_015703.1 3161006 3161539 R PFAM: Bacterial regulatory proteins, tetR family; TetR family transcriptional regulator complement(3161006..3161539) Runella slithyformis DSM 19594 10871258 YP_004656257.1 CDS Runsl_2728 NC_015703.1 3161536 3161715 R COGs: COG3655 transcriptional regulator protein; InterPro IPR001387; KEGG: fba:FIC_01723 DNA-binding protein; SMART: Helix-turn-helix type 3; SPTR: DNA-binding protein; hypothetical protein complement(3161536..3161715) Runella slithyformis DSM 19594 10871259 YP_004656258.1 CDS Runsl_2729 NC_015703.1 3161824 3162039 R PFAM: Helix-turn-helix; KEGG: lby:Lbys_0955 hypothetical protein; SPTR: uncharacterized protein; XRE family transcriptional regulator complement(3161824..3162039) Runella slithyformis DSM 19594 10871260 YP_004656259.1 CDS Runsl_2730 NC_015703.1 3162043 3162579 R hypothetical protein complement(3162043..3162579) Runella slithyformis DSM 19594 10871261 YP_004656260.1 CDS Runsl_2731 NC_015703.1 3162817 3163074 D KEGG: swp:swp_4221 hypothetical protein; SPTR: Predicted protein; hypothetical protein 3162817..3163074 Runella slithyformis DSM 19594 10871262 YP_004656261.1 CDS Runsl_2732 NC_015703.1 3163182 3163592 R InterPro IPR012867; KEGG: mtt:Ftrac_3142 hypothetical protein; PFAM: Protein of unknown function DUF1648; SPTR: uncharacterized protein; hypothetical protein complement(3163182..3163592) Runella slithyformis DSM 19594 10871263 YP_004656262.1 CDS Runsl_2733 NC_015703.1 3163836 3164336 R PFAM: Protein of unknown function (DUF1648); KEGG: sli:Slin_6607 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3163836..3164336) Runella slithyformis DSM 19594 10871264 YP_004656263.1 CDS Runsl_2734 NC_015703.1 3164820 3167039 R COGs: COG3292 periplasmic ligand-binding sensor domain; InterPro IPR011110; KEGG: sli:Slin_6608 transcriptional regulator; PFAM: Two component regulator propeller; SPTR: Two component regulator propeller domain protein; hypothetical protein complement(3164820..3167039) Runella slithyformis DSM 19594 10871265 YP_004656264.1 CDS Runsl_2735 NC_015703.1 3167191 3169560 R PFAM: Two component regulator propeller; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR014327:IPR007627:IPR013249; KEGG: dfe:Dfer_4314 transcriptional regulator, LuxR family; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: Transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; two component regulator propeller domain-containing protein complement(3167191..3169560) Runella slithyformis DSM 19594 10871266 YP_004656265.1 CDS Runsl_2736 NC_015703.1 3169789 3170331 D PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3220 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; ECF subfamily RNA polymerase sigma-24 subunit 3169789..3170331 Runella slithyformis DSM 19594 10871267 YP_004656266.1 CDS Runsl_2737 NC_015703.1 3170620 3173985 D PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: dfe:Dfer_0616 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 3170620..3173985 Runella slithyformis DSM 19594 10871268 YP_004656267.1 CDS Runsl_2738 NC_015703.1 3174015 3175652 D COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_0615 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein 3174015..3175652 Runella slithyformis DSM 19594 10871269 YP_004656268.1 CDS Runsl_2739 NC_015703.1 3175883 3179164 D PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: dfe:Dfer_0616 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 3175883..3179164 Runella slithyformis DSM 19594 10871270 YP_004656269.1 CDS Runsl_2740 NC_015703.1 3179195 3180880 D COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: lby:Lbys_3376 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein 3179195..3180880 Runella slithyformis DSM 19594 10871271 YP_004656270.1 CDS Runsl_2741 NC_015703.1 3181185 3184598 D PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: lby:Lbys_3377 hypothetical protein; SPTR: uncharacterized protein; manually curated; TonB-dependent receptor plug 3181185..3184598 Runella slithyformis DSM 19594 10871272 YP_004656271.1 CDS Runsl_2742 NC_015703.1 3184621 3186258 D KEGG: sli:Slin_6613 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3184621..3186258 Runella slithyformis DSM 19594 10871273 YP_004656272.1 CDS Runsl_2743 NC_015703.1 3186339 3187583 D COGs: COG4287 PhoPQ-activated pathogenicity-related protein; InterPro IPR009199; KEGG: dfe:Dfer_3217 hypothetical protein; PFAM: PhoPQ-activated pathogenicity-related protein, PqaA type; SPTR: uncharacterized protein; hypothetical protein 3186339..3187583 Runella slithyformis DSM 19594 10871274 YP_004656273.1 CDS Runsl_2744 NC_015703.1 3187671 3189017 D PFAM: PhoPQ-activated pathogenicity-related protein; COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129; KEGG: dfe:Dfer_3215 glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase; SPTR: Glycerophosphoryl diester phosphodiesterase; PhoPQ-activated pathogenicity-like protein PqaA type 3187671..3189017 Runella slithyformis DSM 19594 10871275 YP_004656274.1 CDS Runsl_2745 NC_015703.1 3189462 3190271 D PFAM: Glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 3189462..3190271 Runella slithyformis DSM 19594 10871276 YP_004656275.1 CDS Runsl_2746 NC_015703.1 3190432 3190626 D COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129:IPR003140; KEGG: dfe:Dfer_3909 glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase; Phospholipase/carboxylesterase; SPTR: Glycerophosphoryl diester phosphodiesterase; hypothetical protein 3190432..3190626 Runella slithyformis DSM 19594 10871277 YP_004656276.1 CDS Runsl_2747 NC_015703.1 3190664 3192382 D PFAM: Glycerophosphoryl diester phosphodiesterase; alpha/beta hydrolase fold; InterPro IPR004843; KEGG: dfe:Dfer_3216 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; glycerophosphoryl diester phosphodiesterase 3190664..3192382 Runella slithyformis DSM 19594 10871278 YP_004656277.1 CDS Runsl_2748 NC_015703.1 3192474 3194243 D PFAM: Calcineurin-like phosphoesterase; COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545:IPR001650:IPR014001; KEGG: sli:Slin_3330 DEAD/DEAH box helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein; metallophosphoesterase 3192474..3194243 Runella slithyformis DSM 19594 10871279 YP_004656278.1 CDS Runsl_2749 NC_015703.1 3194324 3195652 D PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; InterPro IPR003088; KEGG: fbc:FB2170_05305 large, multifunctional secreted protein; PFAM: Cytochrome c, class I; SPTR: large, multifunctional secreted protein; DEAD/DEAH box helicase 3194324..3195652 Runella slithyformis DSM 19594 10871280 YP_004656279.1 CDS Runsl_2750 NC_015703.1 3195844 3198174 D COGs: COG4948 L-alanine-DL-glutamate epimerase; KEGG: dfe:Dfer_1270 L-alanine-DL-glutamate epimerase-like protein; SPTR: L-alanine-DL-glutamate epimerase-like protein; cytochrome c class I 3195844..3198174 Runella slithyformis DSM 19594 10871281 YP_004656280.1 CDS Runsl_2751 NC_015703.1 3198221 3199567 D COGs: COG4299 conserved hypothetical protein; InterPro IPR019259; KEGG: dfe:Dfer_3263 hypothetical protein; PFAM: Protein of unknown function DUF2261, transmembrane; SPTR: uncharacterized protein; L-alanine-DL-glutamate epimerase-like protein 3198221..3199567 Runella slithyformis DSM 19594 10871282 YP_004656281.1 CDS Runsl_2752 NC_015703.1 3199696 3200805 R hypothetical protein complement(3199696..3200805) Runella slithyformis DSM 19594 10871283 YP_004656282.1 CDS Runsl_2753 NC_015703.1 3200888 3201280 R KEGG: sli:Slin_6079 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3200888..3201280) Runella slithyformis DSM 19594 10871284 YP_004656283.1 CDS Runsl_2754 NC_015703.1 3201343 3201870 R COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: dfe:Dfer_0298 esterase; PFAM: esterase; SPTR: esterase; hypothetical protein complement(3201343..3201870) Runella slithyformis DSM 19594 10871285 YP_004656284.1 CDS Runsl_2755 NC_015703.1 3202066 3202938 R PFAM: esterase; KEGG: plm:Plim_2823 hypothetical protein; SPTR: uncharacterized protein; esterase complement(3202066..3202938) Runella slithyformis DSM 19594 10871286 YP_004656285.1 CDS Runsl_2756 NC_015703.1 3203074 3204171 R PFAM: Caspase domain; KEGG: sli:Slin_3815 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3203074..3204171) Runella slithyformis DSM 19594 10871287 YP_004656286.1 CDS Runsl_2757 NC_015703.1 3204266 3204718 R hypothetical protein complement(3204266..3204718) Runella slithyformis DSM 19594 10871288 YP_004656287.1 CDS Runsl_2758 NC_015703.1 3204806 3205171 R KEGG: bcq:BCQ_0190 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3204806..3205171) Runella slithyformis DSM 19594 10871289 YP_004656288.1 CDS Runsl_2759 NC_015703.1 3205431 3205997 R KEGG: chu:CHU_2913 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3205431..3205997) Runella slithyformis DSM 19594 10871290 YP_004656289.1 CDS Runsl_2760 NC_015703.1 3206019 3206315 R PFAM: Activator of Hsp90 ATPase homolog 1-like protein; manually curated; hypothetical protein complement(3206019..3206315) Runella slithyformis DSM 19594 10871291 YP_004656290.1 CDS Runsl_2762 NC_015703.1 3206724 3207089 R COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154:IPR013149; KEGG: rxy:Rxyl_2398 zinc-binding alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SPTR: Alcohol dehydrogenase, zinc-binding protein; Glyoxalase/bleomycin resistance protein/dioxygenase complement(3206724..3207089) Runella slithyformis DSM 19594 10871293 YP_004656291.1 CDS Runsl_2763 NC_015703.1 3207138 3208115 R PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; COGs: COG1764 redox protein regulator of disulfide bond formation; InterPro IPR019953:IPR003718; KEGG: bbe:BBR47_57740 organic hydroperoxide resistance protein; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: Probable organic hydroperoxide resistance protein; TIGRFAM: Peroxiredoxin, organic hydroperoxide resistance-related; NADPH:quinone reductase complement(3207138..3208115) Runella slithyformis DSM 19594 10871294 YP_004656292.1 CDS Runsl_2764 NC_015703.1 3208135 3208551 R PFAM: OsmC-like protein; TIGRFAM: peroxiredoxin, Ohr subfamily; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: bcm:Bcenmc03_6416 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Estradiol 17-beta-dehydrogenase; SPTR: Short-chain dehydrogenase/reductase SDR; Ohr subfamily peroxiredoxin complement(3208135..3208551) Runella slithyformis DSM 19594 10871295 YP_004656293.1 CDS Runsl_2765 NC_015703.1 3208574 3209467 R PFAM: short chain dehydrogenase; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: shg:Sph21_3082 transcriptional regulator, HxlR family; PFAM: Helix-turn-helix, HxlR type; SPTR: Phage integrase site-specific recombinase; estradiol 17-beta-dehydrogenase complement(3208574..3209467) Runella slithyformis DSM 19594 10871296 YP_004656294.1 CDS Runsl_2766 NC_015703.1 3209552 3209926 D PFAM: HxlR-like helix-turn-helix; manually curated; HxlR family transcriptional regulator 3209552..3209926 Runella slithyformis DSM 19594 10871297 YP_004656295.1 CDS Runsl_2768 NC_015703.1 3210449 3211756 R COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: dfe:Dfer_3211 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase; hypothetical protein complement(3210449..3211756) Runella slithyformis DSM 19594 10871299 YP_004656296.1 CDS Runsl_2769 NC_015703.1 3211999 3213192 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006102; KEGG: shg:Sph21_1908 Mannosylglycoprotein endo-beta-mannosidase; PFAM: Glycoside hydrolase 2, immunoglobulin-like beta-sandwich; Glycoside hydrolase 2, carbohydrate-binding; PRIAM: Mannosylglycoprotein endo-beta-mannosidase; SPTR: Glycoside hydrolase; glutamine--scyllo-inositol transaminase 3211999..3213192 Runella slithyformis DSM 19594 10871300 YP_004656297.1 CDS Runsl_2770 NC_015703.1 3213289 3215964 D PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; KEGG: sli:Slin_6579 hypothetical protein; SPTR: uncharacterized protein; mannosylglycoprotein endo-beta-mannosidase 3213289..3215964 Runella slithyformis DSM 19594 10871301 YP_004656298.1 CDS Runsl_2771 NC_015703.1 3216074 3218416 D COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220; KEGG: sti:Sthe_3503 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase; SPTR: uncharacterized protein; hypothetical protein 3216074..3218416 Runella slithyformis DSM 19594 10871302 YP_004656299.1 CDS Runsl_2772 NC_015703.1 3218423 3219331 D PFAM: Dihydrodipicolinate synthetase; Prodigal; manually curated; dihydrodipicolinate synthetase 3218423..3219331 Runella slithyformis DSM 19594 10871303 YP_004656300.1 CDS Runsl_2774 NC_015703.1 3220230 3221270 R PFAM: alpha/beta hydrolase fold; KEGG: dfe:Dfer_1870 hypothetical protein; SPTR: uncharacterized protein; alpha/beta hydrolase complement(3220230..3221270) Runella slithyformis DSM 19594 10871305 YP_004656301.1 CDS Runsl_2775 NC_015703.1 3221267 3221923 R COGs: COG2312 Erythromycin esterase homolog; InterPro IPR007815; KEGG: aoe:Clos_1312 erythromycin esterase; PFAM: Erythromycin esterase; SPTR: Erythromycin esterase; hypothetical protein complement(3221267..3221923) Runella slithyformis DSM 19594 10871306 YP_004656302.1 CDS Runsl_2776 NC_015703.1 3221977 3223314 R PFAM: Erythromycin esterase; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: fjo:Fjoh_4283 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signaling protein without kinase domain; erythromycin esterase complement(3221977..3223314) Runella slithyformis DSM 19594 10871307 YP_004656303.1 CDS Runsl_2777 NC_015703.1 3223336 3224472 D PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_0826 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two-component system response regulator protein; signal transduction histidine kinase 3223336..3224472 Runella slithyformis DSM 19594 10871308 YP_004656304.1 CDS Runsl_2778 NC_015703.1 3224462 3225199 D PFAM: Response regulator receiver domain; LytTr DNA-binding domain; Prodigal; manually curated; LytTR family two component transcriptional regulator 3224462..3225199 Runella slithyformis DSM 19594 10871309 YP_004656305.1 CDS Runsl_2780 NC_015703.1 3225969 3227561 D PFAM: Domain of Unknown Function (DUF1080); Domain of unknown function (DUF377); COGs: COG4275 conserved hypothetical protein; InterPro IPR018634:IPR000005:IPR018060; KEGG: dfe:Dfer_2046 transcriptional regulator, AraC family; PFAM: Chromate resistance exported protein; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; hypothetical protein 3225969..3227561 Runella slithyformis DSM 19594 10871311 YP_004656306.1 CDS Runsl_2781 NC_015703.1 3227612 3228469 D PFAM: Chromate resistance exported protein; Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: sli:Slin_2824 hypothetical protein; SPTR: uncharacterized protein; AraC family transcriptional regulator 3227612..3228469 Runella slithyformis DSM 19594 10871312 YP_004656307.1 CDS Runsl_2782 NC_015703.1 3228562 3229095 D KEGG: phe:Phep_2396 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3228562..3229095 Runella slithyformis DSM 19594 10871313 YP_004656308.1 CDS Runsl_2783 NC_015703.1 3229461 3229979 D COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469:IPR001375; KEGG: zpr:ZPR_4589 peptidase S9B dipeptidylpeptidase IV subunit; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; Peptidase S9, prolyl oligopeptidase, catalytic domain; SPTR: Peptidase S9B dipeptidylpeptidase IV subunit; hypothetical protein 3229461..3229979 Runella slithyformis DSM 19594 10871314 YP_004656309.1 CDS Runsl_2784 NC_015703.1 3230141 3232336 D PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region; COGs: COG0252 L-asparaginase/ Glu-tRNAGln amidotransferase subunit D; InterPro IPR004550:IPR006034; KEGG: cao:Celal_4233 asparaginase; PFAM: Asparaginase/glutaminase; PRIAM: Asparaginase; SPTR: Asparaginase; TIGRFAM: L-asparaginase, type II; peptidase S9B dipeptidylpeptidase IV domain-containing protein 3230141..3232336 Runella slithyformis DSM 19594 10871315 YP_004656310.1 CDS Runsl_2785 NC_015703.1 3232364 3233416 D PFAM: Asparaginase; TIGRFAM: L-asparaginases, type II; KEGG: sus:Acid_4767 hypothetical protein; SPTR: uncharacterized protein; type II L-asparaginase 3232364..3233416 Runella slithyformis DSM 19594 10871316 YP_004656311.1 CDS Runsl_2786 NC_015703.1 3233564 3234637 D PFAM: Protein of unknown function (DUF3500); COGs: COG5616 integral membrane protein; InterPro IPR000005:IPR001440:IPR018060:IPR019734; KEGG: dfe:Dfer_0645 TPR repeat-containing protein; PFAM: Helix-turn-helix, AraC type; Tetratricopeptide TPR-1; PRIAM: Adenylate cyclase; SMART: Helix-turn-helix, AraC domain; Tetratricopeptide repeat; SPTR: TPR repeat-containing protein; hypothetical protein 3233564..3234637 Runella slithyformis DSM 19594 10871317 YP_004656312.1 CDS Runsl_2787 NC_015703.1 3234919 3236670 D PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR005074:IPR003439:IPR003593; KEGG: sli:Slin_4701 ABC transporter; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; AraC family transcriptional regulator 3234919..3236670 Runella slithyformis DSM 19594 10871318 YP_004656313.1 CDS Runsl_2788 NC_015703.1 3236879 3239071 D PFAM: Peptidase C39 family; ABC transporter; KEGG: fjo:Fjoh_1297 hypothetical protein; SPTR: hemolysin secretion transport system membrane protein; xenobiotic-transporting ATPase 3236879..3239071 Runella slithyformis DSM 19594 10871319 YP_004656314.1 CDS Runsl_2789 NC_015703.1 3239107 3240387 D InterPro IPR012970:IPR003159:IPR004103; KEGG: phe:Phep_0786 polysaccharide lyase 8; PFAM: Polysaccharide lyase 8, central domain; Polysaccharide lyase 8, N-terminal alpha-helical; Polysaccharide lyase 8, C-terminal; PRIAM: Chondroitin AC lyase; SPTR: uncharacterized protein; hypothetical protein 3239107..3240387 Runella slithyformis DSM 19594 10871320 YP_004656315.1 CDS Runsl_2790 NC_015703.1 3240481 3242643 D PFAM: Polysaccharide lyase 8, N terminal alpha-helical domain; Polysaccharide lyase 8, super-sandwich domain; Polysaccharide lyase 8, C-terminal beta-sandwich domain; Chondroitin AC lyase 3240481..3242643 Runella slithyformis DSM 19594 10871321 YP_004656316.1 CDS Runsl_2791 NC_015703.1 3242978 3243133 D hypothetical protein 3242978..3243133 Runella slithyformis DSM 19594 10871322 YP_004656317.1 CDS Runsl_2792 NC_015703.1 3243287 3243700 D KEGG: sli:Slin_6085 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3243287..3243700 Runella slithyformis DSM 19594 10871323 YP_004656318.1 CDS Runsl_2793 NC_015703.1 3243926 3244159 R COGs: COG1609 Transcriptional regulators; InterPro IPR001761:IPR000005:IPR018060; KEGG: dfe:Dfer_4330 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; Periplasmic binding protein/LacI transcriptional regulator; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; hypothetical protein complement(3243926..3244159) Runella slithyformis DSM 19594 10871324 YP_004656319.1 CDS Runsl_2794 NC_015703.1 3244250 3245413 R PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; family; COGs: COG0738 Fucose permease; InterPro IPR011701; KEGG: dfe:Dfer_4329 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; AraC family transcriptional regulator complement(3244250..3245413) Runella slithyformis DSM 19594 10871325 YP_004656320.1 CDS Runsl_2795 NC_015703.1 3245473 3246726 R PFAM: Major Facilitator Superfamily; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: sli:Slin_6585 ROK family protein; PFAM: ROK; PRIAM: Glucokinase; SPTR: ROK family protein; major facilitator superfamily protein complement(3245473..3246726) Runella slithyformis DSM 19594 10871326 YP_004656321.1 CDS Runsl_2796 NC_015703.1 3246912 3247760 R PFAM: ROK family; COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015883:IPR004867; KEGG: sli:Slin_6586 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; Glycoside hydrolase, family 20, C-terminal; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Beta-N-acetylhexosaminidase; glucokinase complement(3246912..3247760) Runella slithyformis DSM 19594 10871327 YP_004656322.1 CDS Runsl_2797 NC_015703.1 3247902 3250481 R PFAM: carbohydrate binding domain; Glycosyl hydrolase 20, catalytic domain; Glycosyl hydrolase 20, domain 2; Chitobiase/beta-hexosaminidase C-terminal domain; COGs: COG4299 conserved hypothetical protein; InterPro IPR019259; KEGG: sli:Slin_6587 heparan-alpha-glucosaminide N-acetyltransferase; PFAM: Protein of unknown function DUF2261, transmembrane; SPTR: Heparan-alpha-glucosaminide N-acetyltransferase; beta-N-acetylhexosaminidase complement(3247902..3250481) Runella slithyformis DSM 19594 10871328 YP_004656323.1 CDS Runsl_2798 NC_015703.1 3250582 3251679 D PFAM: Protein of unknown function (DUF1624); InterPro IPR004843; KEGG: fbc:FB2170_04120 hypothetical protein; PFAM: Metallophosphoesterase; SPTR: uncharacterized protein; hypothetical protein 3250582..3251679 Runella slithyformis DSM 19594 10871329 YP_004656324.1 CDS Runsl_2799 NC_015703.1 3251793 3252740 D PFAM: Calcineurin-like phosphoesterase; KEGG: dfe:Dfer_4325 hypothetical protein; SPTR: uncharacterized protein; metallophosphoesterase 3251793..3252740 Runella slithyformis DSM 19594 10871330 YP_004656325.1 CDS Runsl_2800 NC_015703.1 3253056 3255467 D InterPro IPR004843; KEGG: pbs:Plabr_0120 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; hypothetical protein 3253056..3255467 Runella slithyformis DSM 19594 10871331 YP_004656326.1 CDS Runsl_2801 NC_015703.1 3255712 3257265 D PFAM: Calcineurin-like phosphoesterase; KEGG: ddi:DDB_G0286243 hypothetical protein; SPTR: uncharacterized protein; metallophosphoesterase 3255712..3257265 Runella slithyformis DSM 19594 10871332 YP_004656327.1 CDS Runsl_2802 NC_015703.1 3257463 3257741 R hypothetical protein complement(3257463..3257741) Runella slithyformis DSM 19594 10871333 YP_004656328.1 CDS Runsl_2803 NC_015703.1 3258064 3258351 R hypothetical protein complement(3258064..3258351) Runella slithyformis DSM 19594 10871334 YP_004656329.1 CDS Runsl_2804 NC_015703.1 3258431 3258682 R hypothetical protein complement(3258431..3258682) Runella slithyformis DSM 19594 10871335 YP_004656330.1 CDS Runsl_2805 NC_015703.1 3260043 3260312 R Prodigal; manually curated; hypothetical protein complement(3260043..3260312) Runella slithyformis DSM 19594 10871336 YP_004656331.1 CDS Runsl_2807 NC_015703.1 3261104 3261877 D PFAM: NIPSNAP; COGs: COG4993 Glucose dehydrogenase; InterPro IPR019551:IPR002372:IPR003088:IPR018391; KEGG: dfe:Dfer_0311 pyrrolo-quinoline quinone; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; Cytochrome c, class I; PRIAM: Quinoprotein glucose dehydrogenase; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Pyrrolo-quinoline quinone; NIPSNAP family containing protein 3261104..3261877 Runella slithyformis DSM 19594 10871338 YP_004656332.1 CDS Runsl_2808 NC_015703.1 3261971 3264094 R PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus; Cytochrome c; PQQ enzyme repeat; InterPro IPR001440:IPR019734; KEGG: dfe:Dfer_2755 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; quinoprotein glucose dehydrogenase complement(3261971..3264094) Runella slithyformis DSM 19594 10871339 YP_004656333.1 CDS Runsl_2809 NC_015703.1 3264390 3266633 D PFAM: Tetratricopeptide repeat; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: sli:Slin_1742 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; SPTR: Aldehyde dehydrogenase; hypothetical protein 3264390..3266633 Runella slithyformis DSM 19594 10871340 YP_004656334.1 CDS Runsl_2810 NC_015703.1 3266708 3268123 R PFAM: Aldehyde dehydrogenase; InterPro IPR001387; KEGG: dfe:Dfer_1213 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; aldehyde dehydrogenase complement(3266708..3268123) Runella slithyformis DSM 19594 10871341 YP_004656335.1 CDS Runsl_2811 NC_015703.1 3268337 3269347 D PFAM: Helix-turn-helix; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: coc:Coch_0498 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Estradiol 17-beta-dehydrogenase; SPTR: Short-chain alcohol-related dehydrogenase; helix-turn-helix domain-containing protein 3268337..3269347 Runella slithyformis DSM 19594 10871342 YP_004656336.1 CDS Runsl_2812 NC_015703.1 3269429 3270232 D PFAM: short chain dehydrogenase; KEGG: dfe:Dfer_3623 hypothetical protein; SPTR: uncharacterized protein; estradiol 17-beta-dehydrogenase 3269429..3270232 Runella slithyformis DSM 19594 10871343 YP_004656337.1 CDS Runsl_2813 NC_015703.1 3270238 3271275 R COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: chu:CHU_0537 HlyD family multidrug resistance protein; PFAM: Secretion protein HlyD; SPTR: Multidrug resistance protein; HlyD family secretion protein; TIGRFAM: Secretion protein HlyD; hypothetical protein complement(3270238..3271275) Runella slithyformis DSM 19594 10871344 YP_004656338.1 CDS Runsl_2814 NC_015703.1 3271579 3272745 D PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR004764:IPR001036; KEGG: chu:CHU_0538 AcrB/AcrD family multidrug resistance protein; PFAM: Acriflavin resistance protein; SPTR: AcrB/AcrD family multidrug resistance protein; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; RND family efflux transporter MFP subunit 3271579..3272745 Runella slithyformis DSM 19594 10871345 YP_004656339.1 CDS Runsl_2815 NC_015703.1 3272916 3276065 D PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; COGs: COG1538 Outer membrane protein; InterPro IPR010131:IPR003423; KEGG: chu:CHU_0539 outer membrane lipoprotein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 3272916..3276065 Runella slithyformis DSM 19594 10871346 YP_004656340.1 CDS Runsl_2816 NC_015703.1 3276140 3277576 D PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; KEGG: cpi:Cpin_3252 outer membrane protein; SPTR: Outer membrane protein, OMP85 family; NodT family RND efflux system outer membrane lipoprotein 3276140..3277576 Runella slithyformis DSM 19594 10871347 YP_004656341.1 CDS Runsl_2817 NC_015703.1 3277660 3278820 D PFAM: Surface antigen; COGs: COG3104 Dipeptide/tripeptide permease; InterPro IPR005279:IPR000109; KEGG: bth:BT_4385 di-tripeptide ABC transporter; PFAM: Oligopeptide transporter; SPTR: uncharacterized protein; TIGRFAM: Amino acid/peptide transporter; hypothetical protein 3277660..3278820 Runella slithyformis DSM 19594 10871348 YP_004656342.1 CDS Runsl_2818 NC_015703.1 3279245 3280762 D PFAM: POT family; TIGRFAM: amino acid/peptide transporter (Peptide:H+ symporter), bacterial; COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: dfe:Dfer_3731 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; amino acid/peptide transporter 3279245..3280762 Runella slithyformis DSM 19594 10871349 YP_004656343.1 CDS Runsl_2819 NC_015703.1 3280888 3281466 D PFAM: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase; KEGG: sli:Slin_4550 TonB-dependent receptor plug; SPTR: TonB-dependent receptor plug; 5-formyltetrahydrofolate cyclo-ligase 3280888..3281466 Runella slithyformis DSM 19594 10871350 YP_004656344.1 CDS Runsl_2820 NC_015703.1 3281527 3284454 D PFAM: MG2 domain; COGs: COG0136 Aspartate-semialdehyde dehydrogenase; InterPro IPR005986:IPR000534:IPR012280; KEGG: sli:Slin_5364 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation region; Semialdehyde dehydrogenase, NAD-binding; PRIAM: Aspartate-semialdehyde dehydrogenase; SPTR: Aspartate-semialdehyde dehydrogenase; TIGRFAM: Aspartate-semialdehyde dehydrogenase, bacterial; hypothetical protein 3281527..3284454 Runella slithyformis DSM 19594 10871351 YP_004656345.1 CDS Runsl_2821 NC_015703.1 3284854 3285864 D PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (peptidoglycan organisms); InterPro IPR005202; KEGG: sur:STAUR_0635 GRAs-like transcription factor; PFAM: GRAS transcription factor; SPTR: GAI protein; aspartate-semialdehyde dehydrogenase 3284854..3285864 Runella slithyformis DSM 19594 10871352 YP_004656346.1 CDS Runsl_2822 NC_015703.1 3286121 3287155 D PFAM: GRAS family transcription factor; COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839; KEGG: dtu:Dtur_1122 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/II; PRIAM: Histidinol-phosphate transaminase; SPTR: Histidinol-phosphate aminotransferase; GRAS transcription factor 3286121..3287155 Runella slithyformis DSM 19594 10871353 YP_004656347.1 CDS Runsl_2823 NC_015703.1 3287193 3288299 D PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: dfe:Dfer_4878 peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; PRIAM: Membrane alanyl aminopeptidase; SPTR: Peptidase M1 membrane alanine aminopeptidase; histidinol-phosphate transaminase 3287193..3288299 Runella slithyformis DSM 19594 10871354 YP_004656348.1 CDS Runsl_2824 NC_015703.1 3288505 3291060 D PFAM: Peptidase M1; manually curated; alanyl aminopeptidase 3288505..3291060 Runella slithyformis DSM 19594 10871355 YP_004656349.1 CDS Runsl_2828 NC_015703.1 3293048 3293167 R COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: sli:Slin_4006 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; hypothetical protein complement(3293048..3293167) Runella slithyformis DSM 19594 10871359 YP_004656350.1 CDS Runsl_2829 NC_015703.1 3293293 3294321 R PFAM: OmpA family; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_5120 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; OmpA/MotB domain-containing protein complement(3293293..3294321) Runella slithyformis DSM 19594 10871360 YP_004656351.1 CDS Runsl_2830 NC_015703.1 3294525 3295556 R PFAM: Glycosyl transferase 2; COGs: COG0591 Na+/proline symporter; InterPro IPR019900:IPR001734; KEGG: dfe:Dfer_3985 SSS sodium solute transporter superfamily; PFAM: Sodium/solute symporter; SPTR: SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup; family 2 glycosyl transferase complement(3294525..3295556) Runella slithyformis DSM 19594 10871361 YP_004656352.1 CDS Runsl_2831 NC_015703.1 3295635 3297230 R PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; COGs: COG3836 2 4-dihydroxyhept-2-ene-1 7-dioic acid aldolase; InterPro IPR005000; KEGG: sli:Slin_6606 HpcH/HpaI aldolase; PFAM: HpcH/HpaI aldolase; SPTR: HpcH/HpaI aldolase; sodium solute transporter superfamily protein complement(3295635..3297230) Runella slithyformis DSM 19594 10871362 YP_004656353.1 CDS Runsl_2832 NC_015703.1 3297431 3298255 D PFAM: HpcH/HpaI aldolase/citrate lyase; KEGG: sli:Slin_6605 hypothetical protein; SPTR: uncharacterized protein; HpcH/HpaI aldolase 3297431..3298255 Runella slithyformis DSM 19594 10871363 YP_004656354.1 CDS Runsl_2833 NC_015703.1 3298300 3300423 D COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: dfe:Dfer_0546 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein; hypothetical protein 3298300..3300423 Runella slithyformis DSM 19594 10871364 YP_004656355.1 CDS Runsl_2834 NC_015703.1 3300476 3301468 D PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; InterPro IPR002591; KEGG: dfe:Dfer_3007 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase; oxidoreductase domain-containing protein 3300476..3301468 Runella slithyformis DSM 19594 10871365 YP_004656356.1 CDS Runsl_2835 NC_015703.1 3301559 3303208 D PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase; InterPro IPR004843; KEGG: sli:Slin_6603 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; type I phosphodiesterase/nucleotide pyrophosphatase 3301559..3303208 Runella slithyformis DSM 19594 10871366 YP_004656357.1 CDS Runsl_2836 NC_015703.1 3303494 3304879 D PFAM: Calcineurin-like phosphoesterase; metallophosphoesterase 3303494..3304879 Runella slithyformis DSM 19594 10871367 YP_004656358.1 CDS Runsl_2837 NC_015703.1 3305435 3305668 R KEGG: sli:Slin_6157 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3305435..3305668) Runella slithyformis DSM 19594 10871368 YP_004656359.1 CDS Runsl_2838 NC_015703.1 3306341 3306817 R hypothetical protein complement(3306341..3306817) Runella slithyformis DSM 19594 10871369 YP_004656360.1 CDS Runsl_2839 NC_015703.1 3307091 3307963 R COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; KEGG: bfs:BF1083 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3307091..3307963) Runella slithyformis DSM 19594 10871370 YP_004656361.1 CDS Runsl_2840 NC_015703.1 3307980 3309881 R COGs: COG1282 NAD/NADP transhydrogenase beta subunit; InterPro IPR004003; KEGG: cpi:Cpin_6489 NAD(P)(+) transhydrogenase (AB-specific); PFAM: NAD(P) transhydrogenase, beta subunit; PRIAM: NAD(P)(+) transhydrogenase (AB-specific); SPTR: NAD(P) transhydrogenase subunit beta; hypothetical protein complement(3307980..3309881) Runella slithyformis DSM 19594 10871371 YP_004656362.1 CDS Runsl_2841 NC_015703.1 3310157 3311560 R PFAM: NAD(P) transhydrogenase beta subunit; COGs: COG3288 NAD/NADP transhydrogenase alpha subunit; KEGG: cpi:Cpin_6490 pyridine nucleotide transhydrogenase subunit alpha; SPTR: Pyridine nucleotide transhydrogenase subunit alpha; NAD(P)(+) transhydrogenase complement(3310157..3311560) Runella slithyformis DSM 19594 10871372 YP_004656363.1 CDS Runsl_2842 NC_015703.1 3311718 3312026 R COGs: COG3288 NAD/NADP transhydrogenase alpha subunit; InterPro IPR007886:IPR007698; KEGG: syp:SYNPCC7002_A0986 nicotinamide nucleotide transhydrogenase, chain alpha, part 1; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal; PRIAM: NAD(P)(+) transhydrogenase (AB-specific); SPTR: NAD(P) transhydrogenase, alpha subunit part 1; pyridine nucleotide transhydrogenase subunit alpha complement(3311718..3312026) Runella slithyformis DSM 19594 10871373 YP_004656364.1 CDS Runsl_2843 NC_015703.1 3312115 3313248 R PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: NAD(P) transhydrogenase, alpha subunit; COGs: COG1312 D-mannonate dehydratase; HAMAP: Mannonate dehydratase; InterPro IPR004628; KEGG: dfe:Dfer_4123 mannonate dehydratase; PFAM: Mannonate dehydratase; PRIAM: Mannonate dehydratase; SPTR: Mannonate dehydratase 1; TIGRFAM: Mannonate dehydratase; NAD(P)(+) transhydrogenase complement(3312115..3313248) Runella slithyformis DSM 19594 10871374 YP_004656365.1 CDS Runsl_2844 NC_015703.1 3313630 3314823 D PFAM: D-mannonate dehydratase (UxuA); TIGRFAM: mannonate dehydratase; InterPro IPR005151; KEGG: cpi:Cpin_6359 peptidase S41; PFAM: Peptidase S41; SPTR: Peptidase S41; mannonate dehydratase 3313630..3314823 Runella slithyformis DSM 19594 10871375 YP_004656366.1 CDS Runsl_2845 NC_015703.1 3314980 3316398 R PFAM: Peptidase S41; peptidase S41 complement(3314980..3316398) Runella slithyformis DSM 19594 10871376 YP_004656367.1 CDS Runsl_2846 NC_015703.1 3316669 3317022 D Prodigal; manually curated; hypothetical protein 3316669..3317022 Runella slithyformis DSM 19594 10871377 YP_004656368.1 CDS Runsl_2848 NC_015703.1 3317706 3318035 D KEGG: chu:CHU_2575 two-component response regulator; SPTR: Two-component system response regulator protein; hypothetical protein 3317706..3318035 Runella slithyformis DSM 19594 10871379 YP_004656369.1 CDS Runsl_2849 NC_015703.1 3318292 3318543 D COGs: COG1220 ATP-dependent protease HslVU (ClpYQ) ATPase subunit; HAMAP: ATP-dependent hsl protease ATP-binding subunit hslU; InterPro IPR004491:IPR013093:IPR019489:IPR003593; KEGG: sli:Slin_1628 heat shock protein HslVU, ATPase HslU; PFAM: ATPase associated with various cellular activities, AAA-2; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent protease ATPase subunit HslU; TIGRFAM: Heat shock protein HslU; two-component response regulator 3318292..3318543 Runella slithyformis DSM 19594 10871380 YP_004656370.1 CDS Runsl_2850 NC_015703.1 3318714 3320153 R PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ATPase associated with various cellular activities (AAA); TIGRFAM: ATP-dependent protease HslVU, ATPase subunit; KEGG: sli:Slin_5184 hypothetical protein; SPTR: uncharacterized protein; ATP-dependent protease ATP-binding subunit HslU complement(3318714..3320153) Runella slithyformis DSM 19594 10871381 YP_004656371.1 CDS Runsl_2851 NC_015703.1 3320249 3320536 D KEGG: sli:Slin_4386 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3320249..3320536 Runella slithyformis DSM 19594 10871382 YP_004656372.1 CDS Runsl_2852 NC_015703.1 3320611 3321069 D KEGG: chu:CHU_3424 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3320611..3321069 Runella slithyformis DSM 19594 10871383 YP_004656373.1 CDS Runsl_2853 NC_015703.1 3321157 3321408 D COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254:IPR001478; KEGG: sli:Slin_2676 HtrA2 peptidase; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF; SPTR: HtrA2 peptidase; hypothetical protein 3321157..3321408 Runella slithyformis DSM 19594 10871384 YP_004656374.1 CDS Runsl_2854 NC_015703.1 3321480 3322490 R PFAM: Trypsin; KEGG: sli:Slin_2675 hypothetical protein; SPTR: uncharacterized protein; HtrA2 peptidase complement(3321480..3322490) Runella slithyformis DSM 19594 10871385 YP_004656375.1 CDS Runsl_2855 NC_015703.1 3322566 3322748 D COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rbi:RB2501_10772 arylsulphatase A; PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: Arylsulphatase A; hypothetical protein 3322566..3322748 Runella slithyformis DSM 19594 10871386 YP_004656376.1 CDS Runsl_2856 NC_015703.1 3322808 3324148 D PFAM: Sulfatase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rbi:RB2501_10737 N-acetylglucosamine-6-sulfatase; PFAM: Sulfatase; PRIAM: N-acetylglucosamine-6-sulfatase; SPTR: N-acetylglucosamine-6-sulfatase; N-acetylgalactosamine-6-sulfatase 3322808..3324148 Runella slithyformis DSM 19594 10871387 YP_004656377.1 CDS Runsl_2857 NC_015703.1 3324226 3325755 D PFAM: Sulfatase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: psn:Pedsa_1812 sulfatase; PFAM: Sulfatase; PRIAM: N-sulfoglucosamine sulfohydrolase; SPTR: Heparan N-sulfatase; N-acetylglucosamine-6-sulfatase 3324226..3325755 Runella slithyformis DSM 19594 10871388 YP_004656378.1 CDS Runsl_2858 NC_015703.1 3325780 3327192 D PFAM: Sulfatase; COGs: COG1624 conserved hypothetical protein; InterPro IPR014046:IPR003390; KEGG: sli:Slin_2673 hypothetical protein; PFAM: DNA integrity scanning protein, DisA, N-terminal; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00159; N-sulfoglucosamine sulfohydrolase 3325780..3327192 Runella slithyformis DSM 19594 10871389 YP_004656379.1 CDS Runsl_2859 NC_015703.1 3327198 3327995 R PFAM: DisA bacterial checkpoint controller nucleotide-binding; TIGRFAM: TIGR00159 family protein; COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: dfe:Dfer_4069 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein; SPTR: SNARE associated Golgi protein; hypothetical protein complement(3327198..3327995) Runella slithyformis DSM 19594 10871390 YP_004656380.1 CDS Runsl_2860 NC_015703.1 3328046 3328684 R PFAM: SNARE associated Golgi protein; COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_4068 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; hypothetical protein complement(3328046..3328684) Runella slithyformis DSM 19594 10871391 YP_004656381.1 CDS Runsl_2861 NC_015703.1 3328794 3330662 R PFAM: ABC transporter; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: cpi:Cpin_0010 LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SPTR: uncharacterized protein; ABC transporter complement(3328794..3330662) Runella slithyformis DSM 19594 10871392 YP_004656382.1 CDS Runsl_2862 NC_015703.1 3330780 3331427 R PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; COGs: COG4585 Signal transduction histidine kinase; KEGG: cpi:Cpin_6820 histidine kinase; SPTR: Two-component sensor histidine kinase; manually curated; LuxR family transcriptional regulator complement(3330780..3331427) Runella slithyformis DSM 19594 10871393 YP_004656383.1 CDS Runsl_2863 NC_015703.1 3331534 3332184 R PFAM: Histidine kinase; COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594; KEGG: cpi:Cpin_6820 histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: Histidine kinase; signal transduction histidine kinase complement(3331534..3332184) Runella slithyformis DSM 19594 10871394 YP_004656384.1 CDS Runsl_2864 NC_015703.1 3332298 3333104 R PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; KEGG: cpi:Cpin_6819 hypothetical protein; SPTR: uncharacterized protein; signal transduction histidine kinase complement(3332298..3333104) Runella slithyformis DSM 19594 10871395 YP_004656385.1 CDS Runsl_2865 NC_015703.1 3333074 3333691 R hypothetical protein complement(3333074..3333691) Runella slithyformis DSM 19594 10871396 YP_004656386.1 CDS Runsl_2866 NC_015703.1 3333729 3334499 R InterPro IPR011579; KEGG: fba:FIC_01835 ATPase; SPTR: Archaeal ATPase, fused to C-terminal DUF234 domain; hypothetical protein complement(3333729..3334499) Runella slithyformis DSM 19594 10871397 YP_004656387.1 CDS Runsl_2867 NC_015703.1 3335346 3336770 D PFAM: Archaeal ATPase; COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439:IPR003593; KEGG: lby:Lbys_3306 ABC transporter related protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; ATPase 3335346..3336770 Runella slithyformis DSM 19594 10871398 YP_004656388.1 CDS Runsl_2868 NC_015703.1 3336863 3338503 D PFAM: ABC transporter; COGs: COG0174 Glutamine synthetase; InterPro IPR008147:IPR008146; KEGG: sli:Slin_2432 glutamate--ammonia ligase; PFAM: Glutamine synthetase, catalytic region; Glutamine synthetase, beta-Grasp; PRIAM: Glutamate--ammonia ligase; SPTR: Glutamine synthetase; ABC transporter 3336863..3338503 Runella slithyformis DSM 19594 10871399 YP_004656389.1 CDS Runsl_2869 NC_015703.1 3339074 3340099 D PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; InterPro IPR008894; KEGG: dfe:Dfer_3416 WxcM domain protein; PFAM: WxcM-like, C-terminal; SPTR: WxcM domain protein; glutamate--ammonia ligase 3339074..3340099 Runella slithyformis DSM 19594 10871400 YP_004656390.1 CDS Runsl_2870 NC_015703.1 3340407 3340772 D PFAM: WxcM-like, C-terminal; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: dfe:Dfer_3415 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: dTDP-6-deoxy-D-xylo-hex-3-ulose aminase; WxcM-like domain-containing protein 3340407..3340772 Runella slithyformis DSM 19594 10871401 YP_004656391.1 CDS Runsl_2871 NC_015703.1 3340769 3341896 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_3414 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; glutamine--scyllo-inositol transaminase 3340769..3341896 Runella slithyformis DSM 19594 10871402 YP_004656392.1 CDS Runsl_2872 NC_015703.1 3341865 3342782 D PFAM: Glycosyl transferase 2; InterPro IPR013217; KEGG: sli:Slin_0292 MCP methyltransferase, CheR-type; PFAM: Methyltransferase type 12; SPTR: MCP methyltransferase, CheR-type; family 2 glycosyl transferase 3341865..3342782 Runella slithyformis DSM 19594 10871403 YP_004656393.1 CDS Runsl_2873 NC_015703.1 3342820 3343596 D PFAM: Methyltransferase domain; KEGG: dfe:Dfer_5350 hypothetical protein; SPTR: uncharacterized protein; type 12 methyltransferase 3342820..3343596 Runella slithyformis DSM 19594 10871404 YP_004656394.1 CDS Runsl_2874 NC_015703.1 3343606 3345171 D COGs: COG1363 Cellulase M and related protein; InterPro IPR008007; KEGG: sli:Slin_1139 peptidase M42 family protein; PFAM: Peptidase M42; PRIAM: Cellulase; SPTR: Peptidase M42 family protein; hypothetical protein 3343606..3345171 Runella slithyformis DSM 19594 10871405 YP_004656395.1 CDS Runsl_2875 NC_015703.1 3345175 3346245 D PFAM: M42 glutamyl aminopeptidase; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601; KEGG: sli:Slin_4878 PKD domain containing protein; PFAM: PKD; SMART: PKD; SPTR: PKD domain containing protein; cellulase 3345175..3346245 Runella slithyformis DSM 19594 10871406 YP_004656396.1 CDS Runsl_2876 NC_015703.1 3346319 3349039 R PFAM: PKD domain; PKD domain-containing protein complement(3346319..3349039) Runella slithyformis DSM 19594 10871407 YP_004656397.1 CDS Runsl_2877 NC_015703.1 3349148 3349336 R COGs: COG4805 conserved hypothetical protein; InterPro IPR010281; KEGG: cpi:Cpin_5570 hypothetical protein; PFAM: Protein of unknown function DUF885, bacterial; SPTR: uncharacterized protein; hypothetical protein complement(3349148..3349336) Runella slithyformis DSM 19594 10871408 YP_004656398.1 CDS Runsl_2878 NC_015703.1 3349484 3351229 D PFAM: Bacterial protein of unknown function (DUF885); COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: sli:Slin_6458 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; hypothetical protein 3349484..3351229 Runella slithyformis DSM 19594 10871409 YP_004656399.1 CDS Runsl_2879 NC_015703.1 3351337 3352641 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG1106 ATPase; KEGG: cyn:Cyan7425_2148 hypothetical protein; SPTR: Abortive infection protein; oxidoreductase domain-containing protein complement(3351337..3352641) Runella slithyformis DSM 19594 10871410 YP_004656400.1 CDS Runsl_2880 NC_015703.1 3352825 3354141 D KEGG: sez:Sez_0212 abortive phage resistance protein; SPTR: uncharacterized protein; hypothetical protein 3352825..3354141 Runella slithyformis DSM 19594 10871411 YP_004656401.1 CDS Runsl_2881 NC_015703.1 3354145 3354777 D InterPro IPR002559; KEGG: app:CAP2UW1_1881 transposase IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase IS4 family protein; abortive phage resistance protein 3354145..3354777 Runella slithyformis DSM 19594 10871412 YP_004656402.1 CDS Runsl_2882 NC_015703.1 3354888 3355904 D PFAM: Transposase DDE domain; KEGG: sli:Slin_0249 hypothetical protein; SPTR: uncharacterized protein; transposase IS4 family protein 3354888..3355904 Runella slithyformis DSM 19594 10871413 YP_004656403.1 CDS Runsl_2883 NC_015703.1 3356013 3357380 R PFAM: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; InterPro IPR000014:IPR013767:IPR001610; KEGG: sli:Slin_4536 PAS/PAC sensor protein; PFAM: PAS fold; SMART: PAC motif; SPTR: uncharacterized protein; TIGRFAM: PAS; hypothetical protein complement(3356013..3357380) Runella slithyformis DSM 19594 10871414 YP_004656404.1 CDS Runsl_2884 NC_015703.1 3357659 3358183 R PFAM: PAS fold; TIGRFAM: PAS domain S-box; COGs: COG1858 Cytochrome c peroxidase; InterPro IPR004852; KEGG: dfe:Dfer_3388 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; PRIAM: Cytochrome-c peroxidase; SPTR: Cytochrome-c peroxidase; PAS sensor protein complement(3357659..3358183) Runella slithyformis DSM 19594 10871415 YP_004656405.1 CDS Runsl_2885 NC_015703.1 3358282 3359364 R PFAM: Cytochrome c; Di-haem cytochrome c peroxidase; KEGG: sli:Slin_3490 hypothetical protein; SPTR: uncharacterized protein; cytochrome-c peroxidase complement(3358282..3359364) Runella slithyformis DSM 19594 10871416 YP_004656406.1 CDS Runsl_2886 NC_015703.1 3359375 3360187 R COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: dfe:Dfer_5149 transcriptional regulator, PadR-like family; PFAM: Transcriptional regulator PadR N-terminal-like; SPTR: Transcriptional regulator, PadR-like family; hypothetical protein complement(3359375..3360187) Runella slithyformis DSM 19594 10871417 YP_004656407.1 CDS Runsl_2887 NC_015703.1 3360393 3360743 D PFAM: Transcriptional regulator PadR-like family; KEGG: sli:Slin_2309 hypothetical protein; SPTR: uncharacterized protein; PadR-like family transcriptional regulator 3360393..3360743 Runella slithyformis DSM 19594 10871418 YP_004656408.1 CDS Runsl_2888 NC_015703.1 3360825 3361349 D InterPro IPR006260:IPR003538; KEGG: sli:Slin_5090 TonB family protein; PFAM: Gram-negative bacterial tonB protein; SPTR: TonB family protein; TIGRFAM: TonB, C-terminal; hypothetical protein 3360825..3361349 Runella slithyformis DSM 19594 10871419 YP_004656409.1 CDS Runsl_2889 NC_015703.1 3361716 3362561 D PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; TonB family protein 3361716..3362561 Runella slithyformis DSM 19594 10871420 YP_004656410.1 CDS Runsl_2890 NC_015703.1 3362639 3363328 R COGs: COG0322 Nuclease subunit of the excinuclease complex; HAMAP: UvrABC system protein C; InterPro IPR004791:IPR000305:IPR001162:IPR000445; KEGG: dfe:Dfer_5031 excinuclease ABC, C subunit; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; Helix-hairpin-helix motif; SMART: Excinuclease ABC, C subunit, N-terminal; SPTR: UvrABC system protein C; TIGRFAM: Excinuclease ABC, C subunit; hypothetical protein complement(3362639..3363328) Runella slithyformis DSM 19594 10871421 YP_004656411.1 CDS Runsl_2891 NC_015703.1 3363579 3365384 D PFAM: UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit; KEGG: sli:Slin_5833 hypothetical protein; SPTR: uncharacterized protein; UvrABC system protein C 3363579..3365384 Runella slithyformis DSM 19594 10871422 YP_004656412.1 CDS Runsl_2892 NC_015703.1 3365508 3365855 R PFAM: Protein of unknown function (DUF2847); TIGRFAM: bacillithiol system protein YtxJ; COGs: COG1519 3-deoxy-D-manno-octulosonic-acid transferase; InterPro IPR007507; KEGG: sli:Slin_5831 3-deoxy-D-manno-octulosonic-acid transferase domain protein; PFAM: Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal; SPTR: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; hypothetical protein complement(3365508..3365855) Runella slithyformis DSM 19594 10871423 YP_004656413.1 CDS Runsl_2893 NC_015703.1 3365972 3367342 D PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); KEGG: chu:CHU_3203 hypothetical protein; SPTR: uncharacterized protein; 3-deoxy-D-manno-octulosonic-acid transferase 3365972..3367342 Runella slithyformis DSM 19594 10871424 YP_004656414.1 CDS Runsl_2894 NC_015703.1 3367586 3368107 R PFAM: Transposase IS200 like; KEGG: sli:Slin_0263 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3367586..3368107) Runella slithyformis DSM 19594 10871425 YP_004656415.1 CDS Runsl_2895 NC_015703.1 3368287 3370923 R hypothetical protein complement(3368287..3370923) Runella slithyformis DSM 19594 10871426 YP_004656416.1 CDS Runsl_2896 NC_015703.1 3371106 3371231 R InterPro IPR002934; KEGG: sli:Slin_2850 DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase; SPTR: DNA polymerase beta domain protein region; hypothetical protein complement(3371106..3371231) Runella slithyformis DSM 19594 10871427 YP_004656417.1 CDS Runsl_2897 NC_015703.1 3371228 3371551 R PFAM: Nucleotidyltransferase domain; COGs: COG4320 conserved hypothetical protein; InterPro IPR018721; KEGG: bxe:Bxe_B2085 hypothetical protein; PFAM: Protein of unknown function DUF2252; SPTR: uncharacterized protein; DNA polymerase beta domain-containing protein complement(3371228..3371551) Runella slithyformis DSM 19594 10871428 YP_004656418.1 CDS Runsl_2898 NC_015703.1 3371678 3372871 R PFAM: Uncharacterized protein conserved in bacteria (DUF2252); COGs: COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); InterPro IPR000667; KEGG: dfe:Dfer_3782 D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; SPTR:D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D- alanine-endopeptidase; hypothetical protein complement(3371678..3372871) Runella slithyformis DSM 19594 10871429 YP_004656419.1 CDS Runsl_2899 NC_015703.1 3372927 3374255 R PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family; COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: dfe:Dfer_3558 polyprenyl synthetase; PFAM: Polyprenyl synthetase; SPTR: Polyprenyl synthetase; peptidase S13 D-Ala-D-Ala carboxypeptidase C complement(3372927..3374255) Runella slithyformis DSM 19594 10871430 YP_004656420.1 CDS Runsl_2900 NC_015703.1 3374508 3375485 D PFAM: Polyprenyl synthetase; COGs: COG3622 Hydroxypyruvate isomerase; InterPro IPR006311:IPR012307; KEGG: sli:Slin_3461 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; polyprenyl synthetase 3374508..3375485 Runella slithyformis DSM 19594 10871431 YP_004656421.1 CDS Runsl_2901 NC_015703.1 3375651 3376544 D PFAM: Xylose isomerase-like TIM barrel; xylose isomerase domain-containing protein 3375651..3376544 Runella slithyformis DSM 19594 10871432 YP_004656422.1 CDS Runsl_2902 NC_015703.1 3376520 3376999 D COGs: COG3448 CBS-domain-containing membrane protein; InterPro IPR007065; KEGG: chu:CHU_1999 CBS domain-containing protein; PFAM: HPP; SPTR: CBS-domain-containing membrane protein; hypothetical protein 3376520..3376999 Runella slithyformis DSM 19594 10871433 YP_004656423.1 CDS Runsl_2903 NC_015703.1 3376944 3377573 D PFAM: HPP family; HPP family protein 3376944..3377573 Runella slithyformis DSM 19594 10871434 YP_004656424.1 CDS Runsl_2904 NC_015703.1 3377623 3378354 R PFAM: Bacterial RNA polymerase, alpha chain C terminal domain; COGs: COG0114 Fumarase; HAMAP: Fumarate hydratase class II; InterPro IPR005677:IPR000362:IPR018951; KEGG: dfe:Dfer_2816 fumarate hydratase, class II; PFAM: Fumarate lyase; Fumarase C, C-terminal; PRIAM: Fumarate hydratase; SPTR: Fumarate hydratase, class II; TIGRFAM: Fumarate hydratase, class II; hypothetical protein complement(3377623..3378354) Runella slithyformis DSM 19594 10871435 YP_004656425.1 CDS Runsl_2905 NC_015703.1 3378511 3379932 R PFAM: Fumarase C C-terminus; Lyase; TIGRFAM: fumarate hydratase, class II; class II fumarate hydratase complement(3378511..3379932) Runella slithyformis DSM 19594 10871436 YP_004656426.1 CDS Runsl_2906 NC_015703.1 3380141 3380248 D COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: cpi:Cpin_3073 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; hypothetical protein 3380141..3380248 Runella slithyformis DSM 19594 10871437 YP_004656427.1 CDS Runsl_2907 NC_015703.1 3380818 3382032 D PFAM: Major Facilitator Superfamily; InterPro IPR007168; KEGG: dfe:Dfer_3554 phage shock protein C, PspC; PFAM: PspC; SPTR: Phage shock protein C, PspC; major facilitator superfamily protein 3380818..3382032 Runella slithyformis DSM 19594 10871438 YP_004656428.1 CDS Runsl_2908 NC_015703.1 3382207 3382434 R PFAM: PspC domain; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076; KEGG: dfe:Dfer_0330 oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Oxidoreductase; PspC domain-containing protein complement(3382207..3382434) Runella slithyformis DSM 19594 10871439 YP_004656429.1 CDS Runsl_2909 NC_015703.1 3382788 3384500 D PFAM: GMC oxidoreductase; COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: vpe:Varpa_2806 beta-ig-h3/fasciclin; PFAM: FAS1 domain; SMART: FAS1 domain; SPTR: Beta-Ig-H3/fasciclin; FAD dependent oxidoreductase 3382788..3384500 Runella slithyformis DSM 19594 10871440 YP_004656430.1 CDS Runsl_2910 NC_015703.1 3384779 3385297 D PFAM: Fasciclin domain; COGs: COG0520 Selenocysteine lyase; InterPro IPR000192; KEGG: sli:Slin_6132 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Isopenicillin-N epimerase; SPTR: Aminotransferase class V; beta-Ig-H3/fasciclin 3384779..3385297 Runella slithyformis DSM 19594 10871441 YP_004656431.1 CDS Runsl_2911 NC_015703.1 3385450 3386706 D PFAM: Aminotransferase class-V; COGs: COG1487 nucleic acid-binding protein contains PIN domain; InterPro IPR002716; KEGG: psn:Pedsa_2332 PilT protein domain protein; PFAM: PilT protein, N-terminal; SPTR: PilT protein domain protein; isopenicillin-N epimerase 3385450..3386706 Runella slithyformis DSM 19594 10871442 YP_004656432.1 CDS Runsl_2912 NC_015703.1 3386793 3387185 R PFAM: PIN domain; twitching motility protein PilT complement(3386793..3387185) Runella slithyformis DSM 19594 10871443 YP_004656433.1 CDS Runsl_2913 NC_015703.1 3387164 3387403 R COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: sli:Slin_6549 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28; hypothetical protein complement(3387164..3387403) Runella slithyformis DSM 19594 10871444 YP_004656434.1 CDS Runsl_2914 NC_015703.1 3387534 3389174 R PFAM: Peptidase M28; KEGG: bhy:BHWA1_01800 hypothetical protein; SPTR: uncharacterized protein; peptidase M28 complement(3387534..3389174) Runella slithyformis DSM 19594 10871445 YP_004656435.1 CDS Runsl_2915 NC_015703.1 3389238 3389843 R COGs: COG1106 ATPase; InterPro IPR003395; KEGG: bpo:BP951000_0493 ATPase; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: Predicted ATPase; hypothetical protein complement(3389238..3389843) Runella slithyformis DSM 19594 10871446 YP_004656436.1 CDS Runsl_2916 NC_015703.1 3389848 3390882 R COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545:IPR001650:IPR014001; KEGG: sli:Slin_5691 DEAD/DEAH box helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein; SMC domain-containing protein complement(3389848..3390882) Runella slithyformis DSM 19594 10871447 YP_004656437.1 CDS Runsl_2917 NC_015703.1 3391193 3392527 D PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; InterPro IPR019734; KEGG: sli:Slin_5690 hypothetical protein; SPTR: Tetratricopeptide repeat protein; DEAD/DEAH box helicase 3391193..3392527 Runella slithyformis DSM 19594 10871448 YP_004656438.1 CDS Runsl_2918 NC_015703.1 3392591 3393361 D InterPro IPR000182; KEGG: sli:Slin_1013 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; hypothetical protein 3392591..3393361 Runella slithyformis DSM 19594 10871449 YP_004656439.1 CDS Runsl_2919 NC_015703.1 3393413 3393832 D PFAM: Acetyltransferase (GNAT) family; COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: dfe:Dfer_0190 protein of unknown function DUF140; PFAM: Protein of unknown function DUF140; SPTR: uncharacterized protein; N-acetyltransferase GCN5 3393413..3393832 Runella slithyformis DSM 19594 10871450 YP_004656440.1 CDS Runsl_2920 NC_015703.1 3394022 3394807 D PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein; COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_0189 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; hypothetical protein 3394022..3394807 Runella slithyformis DSM 19594 10871451 YP_004656441.1 CDS Runsl_2921 NC_015703.1 3394819 3395577 D PFAM: ABC transporter; COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: dfe:Dfer_0188 mammalian cell entry related domain protein; PFAM: Mammalian cell entry related; SPTR: Mammalian cell entry related domain protein; sulfate-transporting ATPase 3394819..3395577 Runella slithyformis DSM 19594 10871452 YP_004656442.1 CDS Runsl_2922 NC_015703.1 3395579 3396622 D PFAM: mce related protein; COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155; KEGG: sli:Slin_3318 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; PRIAM: NADPH dehydrogenase; SPTR: NADH:flavin oxidoreductase/NADH oxidase; mammalian cell entry domain-containing protein 3395579..3396622 Runella slithyformis DSM 19594 10871453 YP_004656443.1 CDS Runsl_2923 NC_015703.1 3396703 3397773 D PFAM: NADH:flavin oxidoreductase / NADH oxidase; COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: fba:FIC_01253 UspA; PFAM: UspA; SPTR: UspA; NADPH dehydrogenase 3396703..3397773 Runella slithyformis DSM 19594 10871454 YP_004656444.1 CDS Runsl_2924 NC_015703.1 3397955 3398857 D PFAM: Universal stress protein family; InterPro IPR004013; KEGG: sli:Slin_3513 hypothetical protein; PFAM: PHP, C-terminal; SPTR: uncharacterized protein; UspA domain-containing protein 3397955..3398857 Runella slithyformis DSM 19594 10871455 YP_004656445.1 CDS Runsl_2925 NC_015703.1 3398966 3400894 D PFAM: PHP domain; InterPro IPR001387; KEGG: pph:Ppha_1597 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix domain protein; PHP domain-containing protein 3398966..3400894 Runella slithyformis DSM 19594 10871456 YP_004656446.1 CDS Runsl_2926 NC_015703.1 3401000 3401365 R PFAM: Helix-turn-helix; COGs: COG4680 conserved hypothetical protein; InterPro IPR018669; KEGG: pph:Ppha_1596 hypothetical protein; PFAM: Protein of unknown function DUF2136; SPTR: uncharacterized protein; helix-turn-helix domain-containing protein complement(3401000..3401365) Runella slithyformis DSM 19594 10871457 YP_004656447.1 CDS Runsl_2927 NC_015703.1 3401362 3401673 R PFAM: Uncharacterized protein conserved in bacteria (DUF2136); KEGG: cpi:Cpin_5477 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3401362..3401673) Runella slithyformis DSM 19594 10871458 YP_004656448.1 CDS Runsl_2928 NC_015703.1 3401843 3402670 R PFAM: Protein of unknown function (DUF2911); KEGG: psn:Pedsa_0379 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3401843..3402670) Runella slithyformis DSM 19594 10871459 YP_004656449.1 CDS Runsl_2929 NC_015703.1 3402917 3404725 D InterPro IPR014870; KEGG: sli:Slin_6191 hypothetical protein; PFAM: Domain of unknown function DUF1793; SPTR: uncharacterized protein; hypothetical protein 3402917..3404725 Runella slithyformis DSM 19594 10871460 YP_004656450.1 CDS Runsl_2930 NC_015703.1 3404799 3407306 R PFAM: Domain of unknown function (DUF1793); COGs: COG3508 Homogentisate 1 2-dioxygenase; InterPro IPR005708; KEGG: lby:Lbys_3502 homogentisate 12-dioxygenase; PFAM: Homogentisate 1,2-dioxygenase; SPTR: Homogentisate 12-dioxygenase; hypothetical protein complement(3404799..3407306) Runella slithyformis DSM 19594 10871461 YP_004656451.1 CDS Runsl_2931 NC_015703.1 3407626 3408783 D PFAM: homogentisate 1,2-dioxygenase; TIGRFAM: homogentisate 1,2-dioxygenase; COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR005959:IPR015377:IPR002529; KEGG: lby:Lbys_3503 fumarylacetoacetase; PFAM: Fumarylacetoacetase, N-terminal; Fumarylacetoacetase, C-terminal-like; PRIAM: Fumarylacetoacetase; SPTR: Fumarylacetoacetase; TIGRFAM: Fumarylacetoacetase; homogentisate 12-dioxygenase 3407626..3408783 Runella slithyformis DSM 19594 10871462 YP_004656452.1 CDS Runsl_2932 NC_015703.1 3408828 3410096 D PFAM: Domain of unknown function (DUF1969); Fumarylacetoacetate (FAA) hydrolase; TIGRFAM: fumarylacetoacetase; COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR002563; KEGG: lby:Lbys_3504 flavin reductase domain protein fmN-binding protein; PFAM: Flavin reductase-like, FMN-binding; SPTR: Flavin reductase domain protein FMN-binding protein; fumarylacetoacetase 3408828..3410096 Runella slithyformis DSM 19594 10871463 YP_004656453.1 CDS Runsl_2933 NC_015703.1 3410108 3410968 D PFAM: Flavin reductase like domain; InterPro IPR001087; KEGG: dfe:Dfer_4894 hypothetical protein; PFAM: Lipase, GDSL; SPTR: uncharacterized protein; flavin reductase domain-containing FMN-binding protein 3410108..3410968 Runella slithyformis DSM 19594 10871464 YP_004656454.1 CDS Runsl_2934 NC_015703.1 3411032 3411745 R PFAM: GDSL-like Lipase/Acylhydrolase; G-D-S-L family lipolytic protein complement(3411032..3411745) Runella slithyformis DSM 19594 10871465 YP_004656455.1 CDS Runsl_2935 NC_015703.1 3411879 3412241 R KEGG: sli:Slin_4495 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3411879..3412241) Runella slithyformis DSM 19594 10871466 YP_004656456.1 CDS Runsl_2936 NC_015703.1 3412490 3413866 R KEGG: sli:Slin_2497 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3412490..3413866) Runella slithyformis DSM 19594 10871467 YP_004656457.1 CDS Runsl_2937 NC_015703.1 3414092 3414823 R KEGG: sli:Slin_2509 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3414092..3414823) Runella slithyformis DSM 19594 10871468 YP_004656458.1 CDS Runsl_2938 NC_015703.1 3414905 3415411 R COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: sli:Slin_2531 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YceI family protein; hypothetical protein complement(3414905..3415411) Runella slithyformis DSM 19594 10871469 YP_004656459.1 CDS Runsl_2939 NC_015703.1 3415408 3415941 R PFAM: YceI-like domain; KEGG: sli:Slin_2530 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3415408..3415941) Runella slithyformis DSM 19594 10871470 YP_004656460.1 CDS Runsl_2940 NC_015703.1 3415966 3416682 R InterPro IPR019545; KEGG: sli:Slin_2510 electron transfer DM13; PFAM: Electron transfer DM13; SPTR: Electron transfer DM13; hypothetical protein complement(3415966..3416682) Runella slithyformis DSM 19594 10871471 YP_004656461.1 CDS Runsl_2941 NC_015703.1 3416767 3417213 R PFAM: Electron transfer DM13; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595:IPR001808; KEGG: fps:FP0703 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SPTR: Probable transcriptional regulatory protein, Crp/Fnr family; electron transfer DM13 complement(3416767..3417213) Runella slithyformis DSM 19594 10871472 YP_004656462.1 CDS Runsl_2942 NC_015703.1 3417295 3417996 R PFAM: Cyclic nucleotide-binding domain; KEGG: sli:Slin_2496 hypothetical protein; SPTR: uncharacterized protein; Crp/Fnr family transcriptional regulator complement(3417295..3417996) Runella slithyformis DSM 19594 10871473 YP_004656463.1 CDS Runsl_2943 NC_015703.1 3418070 3419113 R KEGG: sli:Slin_2514 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3418070..3419113) Runella slithyformis DSM 19594 10871474 YP_004656464.1 CDS Runsl_2944 NC_015703.1 3419175 3419576 R KEGG: sli:Slin_2513 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3419175..3419576) Runella slithyformis DSM 19594 10871475 YP_004656465.1 CDS Runsl_2945 NC_015703.1 3419615 3420118 R COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: sli:Slin_1341 esterase; PFAM: esterase; SPTR: esterase; hypothetical protein complement(3419615..3420118) Runella slithyformis DSM 19594 10871476 YP_004656466.1 CDS Runsl_2946 NC_015703.1 3420221 3421156 R PFAM: esterase; COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR000774:IPR001179; KEGG: dfe:Dfer_4633 peptidylprolyl isomerase FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal; Peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; esterase complement(3420221..3421156) Runella slithyformis DSM 19594 10871477 YP_004656467.1 CDS Runsl_2947 NC_015703.1 3421303 3422070 D PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; COGs: COG0793 Periplasmic protease; InterPro IPR004447:IPR001478:IPR005151; KEGG: dfe:Dfer_4634 carboxyl-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; PRIAM: C-terminal processing peptidase; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: Carboxyl-terminal protease; TIGRFAM: Peptidase S41A, C-terminal protease; FKBP-type peptidylprolyl isomerase 3421303..3422070 Runella slithyformis DSM 19594 10871478 YP_004656468.1 CDS Runsl_2948 NC_015703.1 3422153 3424246 D PFAM: C-terminal domain of tail specific protease (DUF3340); Peptidase S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); COGs: COG3411 Ferredoxin; KEGG: chu:CHU_0705 ferrodoxin; SPTR: Ferrodoxin; carboxyl-terminal protease 3422153..3424246 Runella slithyformis DSM 19594 10871479 YP_004656469.1 CDS Runsl_2949 NC_015703.1 3424345 3424650 D PFAM: Sucrase/ferredoxin-like; COGs: COG2252 Permease; InterPro IPR006043; KEGG: sli:Slin_0224 xanthine/uracil/vitamin C permease; PFAM: Xanthine/uracil/vitamin C permease; SPTR: Xanthine/uracil/vitamin C permease; ferrodoxin 3424345..3424650 Runella slithyformis DSM 19594 10871480 YP_004656470.1 CDS Runsl_2950 NC_015703.1 3424800 3426131 D PFAM: Permease; COGs: COG2115 Xylose isomerase; HAMAP: Xylose isomerase; InterPro IPR013452:IPR012307:IPR001998; KEGG: cpi:Cpin_1929 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; PRIAM: Xylose isomerase; SPTR: Xylose isomerase; TIGRFAM: Xylose isomerase, bacterial type; xanthine/uracil/vitamin C permease 3424800..3426131 Runella slithyformis DSM 19594 10871481 YP_004656471.1 CDS Runsl_2951 NC_015703.1 3426256 3427584 R PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: xylose isomerase; COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220; KEGG: dfe:Dfer_3986 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase; SPTR: Dihydrodipicolinate synthetase; manually curated; xylose isomerase complement(3426256..3427584) Runella slithyformis DSM 19594 10871482 YP_004656472.1 CDS Runsl_2952 NC_015703.1 3427883 3428824 D PFAM: Dihydrodipicolinate synthetase; COGs: COG3533 conserved hypothetical protein; InterPro IPR012878; KEGG: pdi:BDI_3335 hypothetical protein; PFAM: Protein of unknown function DUF1680; SPTR: uncharacterized protein; dihydrodipicolinate synthetase 3427883..3428824 Runella slithyformis DSM 19594 10871483 YP_004656473.1 CDS Runsl_2953 NC_015703.1 3428936 3430792 D PFAM: glycosyl hydrolase of unknown function (DUF1680); COGs: COG1297 membrane protein; InterPro IPR004813:IPR004814; KEGG: sli:Slin_5704 oligopeptide transporter OPT family; PFAM: Oligopeptide transporter OPT superfamily; SPTR: Oligopeptide transporter, OPT family; TIGRFAM: Oligopeptide transporter OPT; Oligopeptide transporter OPT superfamily; hypothetical protein 3428936..3430792 Runella slithyformis DSM 19594 10871484 YP_004656474.1 CDS Runsl_2954 NC_015703.1 3430865 3432904 D PFAM: OPT oligopeptide transporter protein; TIGRFAM: oligopeptide transporter, OPT family; oligopeptide transporters, OPT superfamily; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: sli:Slin_6008 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; oligopeptide transporter 3430865..3432904 Runella slithyformis DSM 19594 10871485 YP_004656475.1 CDS Runsl_2955 NC_015703.1 3432989 3436051 R PFAM: AcrB/AcrD/AcrF family; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sli:Slin_6009 efflux transporter RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; acriflavin resistance protein complement(3432989..3436051) Runella slithyformis DSM 19594 10871486 YP_004656476.1 CDS Runsl_2956 NC_015703.1 3436065 3437105 R PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_6010 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; RND family efflux transporter MFP subunit complement(3436065..3437105) Runella slithyformis DSM 19594 10871487 YP_004656477.1 CDS Runsl_2957 NC_015703.1 3437155 3438504 R PFAM: Outer membrane efflux protein; KEGG: zpr:ZPR_3965 hypothetical protein; SPTR: Membrane protein; outer membrane efflux protein complement(3437155..3438504) Runella slithyformis DSM 19594 10871488 YP_004656478.1 CDS Runsl_2958 NC_015703.1 3438548 3438898 R COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: lby:Lbys_2690 transcriptional regulator, TetR family; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; hypothetical protein complement(3438548..3438898) Runella slithyformis DSM 19594 10871489 YP_004656479.1 CDS Runsl_2959 NC_015703.1 3438971 3439648 R PFAM: Bacterial regulatory proteins, tetR family; COGs: COG1403 Restriction endonuclease; InterPro IPR002711:IPR003615; KEGG: sli:Slin_5662 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: HNH endonuclease; TetR family transcriptional regulator complement(3438971..3439648) Runella slithyformis DSM 19594 10871490 YP_004656480.1 CDS Runsl_2960 NC_015703.1 3439881 3440393 D PFAM: HNH endonuclease; COGs: COG0539 Ribosomal protein S1; InterPro IPR003029; KEGG: sli:Slin_5663 RNA binding S1 domain protein; PFAM: Ribosomal protein S1, RNA binding domain; SPTR: RNA binding S1 domain protein; HNH endonuclease 3439881..3440393 Runella slithyformis DSM 19594 10871491 YP_004656481.1 CDS Runsl_2961 NC_015703.1 3440523 3442340 D PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1; RNA binding S1 domain-containing protein 3440523..3442340 Runella slithyformis DSM 19594 10871492 YP_004656482.1 CDS Runsl_2962 NC_015703.1 3442773 3443999 D PFAM: Class III cytochrome C family; Cytochrome c; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR006311; KEGG: dfe:Dfer_3476 molybdopterin oxidoreductase, iron-sulfur binding subunit; SPTR: Molybdopterin oxidoreductase, iron-sulfur binding subunit; cytochrome c class I 3442773..3443999 Runella slithyformis DSM 19594 10871494 YP_004656483.1 CDS Runsl_2963 NC_015703.1 3444025 3447138 D PFAM: Molydopterin dinucleotide binding domain; COGs: COG5557 Polysulphide reductase; InterPro IPR005614; KEGG: sli:Slin_5666 polysulphide reductase NrfD; PFAM: Polysulphide reductase, NrfD; SPTR: Polysulphide reductase NrfD; molybdopterin oxidoreductase, iron-sulfur binding subunit 3444025..3447138 Runella slithyformis DSM 19594 10871495 YP_004656484.1 CDS Runsl_2964 NC_015703.1 3447236 3448663 D PFAM: Polysulphide reductase, NrfD; KEGG: dfe:Dfer_3474 quinol:cytochrome c oxidoreductase membrane protein; SPTR: Quinol:cytochrome c oxidoreductase membrane protein; polysulfide reductase NrfD 3447236..3448663 Runella slithyformis DSM 19594 10871496 YP_004656485.1 CDS Runsl_2965 NC_015703.1 3448738 3449265 D PFAM: Protein of unknown function (DUF3341); InterPro IPR003088; KEGG: dfe:Dfer_3473 cytochrome c family protein; PFAM: Cytochrome c, class I; SPTR: Cytochrome c family protein; quinol:cytochrome c oxidoreductase membrane protein 3448738..3449265 Runella slithyformis DSM 19594 10871497 YP_004656486.1 CDS Runsl_2966 NC_015703.1 3449281 3449871 D PFAM: Cytochrome c; KEGG: sli:Slin_5669 hypothetical protein; SPTR: uncharacterized protein; cytochrome c class I 3449281..3449871 Runella slithyformis DSM 19594 10871498 YP_004656487.1 CDS Runsl_2967 NC_015703.1 3449993 3451303 D COGs: COG1622 Heme/copper-type cytochrome/quinol oxidase subunit 2; InterPro IPR011759:IPR002429; KEGG: sli:Slin_5670 cytochrome c oxidase subunit II; PFAM: Cytochrome c oxidase subunit II C-terminal; Cytochrome C oxidase subunit II, transmembrane region; SPTR: Cytochrome c oxidase subunit 2; hypothetical protein 3449993..3451303 Runella slithyformis DSM 19594 10871499 YP_004656488.1 CDS Runsl_2968 NC_015703.1 3451334 3452455 D PFAM: Cytochrome C oxidase subunit II, periplasmic domain; Cytochrome C oxidase subunit II, transmembrane domain; COGs: COG0843 Heme/copper-type cytochrome/quinol oxidase subunit 1; InterPro IPR000883; KEGG: dfe:Dfer_3470 cytochrome-c oxidase; PFAM: Cytochrome c oxidase, subunit I; SPTR: Cytochrome-c oxidase; cytochrome c oxidase subunit II 3451334..3452455 Runella slithyformis DSM 19594 10871500 YP_004656489.1 CDS Runsl_2969 NC_015703.1 3452488 3454368 D PFAM: Cytochrome C and Quinol oxidase polypeptide I; COGs: COG1612 Uncharacterized protein required for cytochrome oxidase assembly; InterPro IPR003780; KEGG: dfe:Dfer_3469 cytochrome oxidase assembly; PFAM: Cytochrome oxidase assembly; SPTR: Cytochrome oxidase assembly; cytochrome c oxidase subunit I 3452488..3454368 Runella slithyformis DSM 19594 10871501 YP_004656490.1 CDS Runsl_2970 NC_015703.1 3454346 3455368 D PFAM: Cytochrome oxidase assembly protein; COGs: COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor); HAMAP: Protohaem IX farnesyltransferase; InterPro IPR006369:IPR000537; KEGG: dfe:Dfer_3468 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; SPTR: Protoheme IX farnesyltransferase; TIGRFAM: Protohaem IX farnesyltransferase; cytochrome oxidase assembly 3454346..3455368 Runella slithyformis DSM 19594 10871502 YP_004656491.1 CDS Runsl_2971 NC_015703.1 3455370 3456245 D PFAM: UbiA prenyltransferase; TIGRFAM: protoheme IX farnesyltransferase; COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: dfe:Dfer_3467 cytochrome c oxidase subunit III; PFAM: Cytochrome c oxidase, subunit III; SPTR: Cytochrome c oxidase subunit III; protoheme IX farnesyltransferase 3455370..3456245 Runella slithyformis DSM 19594 10871503 YP_004656492.1 CDS Runsl_2972 NC_015703.1 3456254 3456838 D PFAM: Cytochrome c oxidase subunit III; COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: dfe:Dfer_3466 cytochrome c oxidase subunit III; PFAM: Cytochrome c oxidase, subunit III; SPTR: Cytochrome c oxidase subunit III; cytochrome c oxidase subunit III 3456254..3456838 Runella slithyformis DSM 19594 10871504 YP_004656493.1 CDS Runsl_2973 NC_015703.1 3456883 3457644 D PFAM: Cytochrome c oxidase subunit III; KEGG: dfe:Dfer_3465 hypothetical protein; SPTR: uncharacterized protein; cytochrome c oxidase subunit III 3456883..3457644 Runella slithyformis DSM 19594 10871505 YP_004656494.1 CDS Runsl_2974 NC_015703.1 3457731 3458051 D KEGG: sli:Slin_5677 electron transporter SCO1/SenC; SPTR: Electron transport protein SCO1/SenC; hypothetical protein 3457731..3458051 Runella slithyformis DSM 19594 10871506 YP_004656495.1 CDS Runsl_2975 NC_015703.1 3458115 3458639 D COGs: COG2322 membrane protein; InterPro IPR007352; KEGG: dfe:Dfer_3463 protein of unknown function DUF420; PFAM: Protein of unknown function DUF420; SPTR: uncharacterized protein; electron transporter SCO1/SenC 3458115..3458639 Runella slithyformis DSM 19594 10871507 YP_004656496.1 CDS Runsl_2976 NC_015703.1 3458647 3459189 D PFAM: Predicted membrane protein (DUF2306); Protein of unknown function (DUF420); KEGG: dfe:Dfer_3462 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3458647..3459189 Runella slithyformis DSM 19594 10871508 YP_004656497.1 CDS Runsl_2977 NC_015703.1 3459197 3459478 D COGs: COG2890 Methylase of polypeptide chain release factors; InterPro IPR004556:IPR019874:IPR013216; KEGG: dfe:Dfer_4319 modification methylase, HemK family; PFAM: Methyltransferase type 11; SPTR: Modification methylase, HemK family; TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; hypothetical protein 3459197..3459478 Runella slithyformis DSM 19594 10871509 YP_004656498.1 CDS Runsl_2978 NC_015703.1 3459565 3460419 D PFAM: Methyltransferase small domain; TIGRFAM: HemK family methylases; protein-(glutamine-N5) methyltransferase, release factor-specific; KEGG: sli:Slin_5314 hypothetical protein; SPTR: uncharacterized protein; protein-(glutamine-N5) methyltransferase 3459565..3460419 Runella slithyformis DSM 19594 10871510 YP_004656499.1 CDS Runsl_2979 NC_015703.1 3460740 3461456 D InterPro IPR002696; KEGG: sli:Slin_5313 hypothetical protein; PFAM: Protein of unknown function DUF37; SPTR: uncharacterized protein; hypothetical protein 3460740..3461456 Runella slithyformis DSM 19594 10871511 YP_004656500.1 CDS Runsl_2980 NC_015703.1 3461453 3461902 D PFAM: Domain of unknown function DUF37; KEGG: sli:Slin_5312 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3461453..3461902 Runella slithyformis DSM 19594 10871512 YP_004656501.1 CDS Runsl_2981 NC_015703.1 3461902 3462771 D PFAM: TM2 domain; KEGG: mtt:Ftrac_3260 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3461902..3462771 Runella slithyformis DSM 19594 10871513 YP_004656502.1 CDS Runsl_2982 NC_015703.1 3462716 3463600 D KEGG: sli:Slin_5310 hypothetical protein; SPTR: TM2 domain containing protein; hypothetical protein 3462716..3463600 Runella slithyformis DSM 19594 10871514 YP_004656503.1 CDS Runsl_2983 NC_015703.1 3463635 3464087 R PFAM: TM2 domain; KEGG: sli:Slin_5316 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3463635..3464087) Runella slithyformis DSM 19594 10871515 YP_004656504.1 CDS Runsl_2984 NC_015703.1 3464170 3464691 R COGs: COG0283 Cytidylate kinase; HAMAP: Cytidylate kinase; InterPro IPR003136:IPR011994; KEGG: dfe:Dfer_5748 cytidylate kinase; PFAM: Cytidylate kinase region; SPTR: Cytidylate kinase; TIGRFAM: Cytidylate kinase; hypothetical protein complement(3464170..3464691) Runella slithyformis DSM 19594 10871516 YP_004656505.1 CDS Runsl_2985 NC_015703.1 3464889 3465662 D PFAM: Cytidylate kinase; TIGRFAM: cytidylate kinase; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: sli:Slin_3588 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase; cytidylate kinase 3464889..3465662 Runella slithyformis DSM 19594 10871517 YP_004656506.1 CDS Runsl_2986 NC_015703.1 3465659 3466729 D PFAM: FAD dependent oxidoreductase; KEGG: dfe:Dfer_5750 surface antigen (D15); SPTR: Surface antigen (D15); FAD dependent oxidoreductase 3465659..3466729 Runella slithyformis DSM 19594 10871518 YP_004656507.1 CDS Runsl_2987 NC_015703.1 3466749 3470042 D surface antigen (D15) 3466749..3470042 Runella slithyformis DSM 19594 10871519 YP_004656508.1 CDS Runsl_2988 NC_015703.1 3470664 3470837 R InterPro IPR001434:IPR008454; KEGG: sli:Slin_3586 hypothetical protein; PFAM: Protein of unknown function DUF11; Collagen-binding surface protein Cna-like, B region; SPTR: Conserved repeat domain protein; TIGRFAM: Protein of unknown function DUF11; hypothetical protein complement(3470664..3470837) Runella slithyformis DSM 19594 10871520 YP_004656509.1 CDS Runsl_2989 NC_015703.1 3470876 3481474 D PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain; InterPro IPR019861; KEGG: sli:Slin_3585 hypothetical protein; SPTR: membrane protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; hypothetical protein 3470876..3481474 Runella slithyformis DSM 19594 10871521 YP_004656510.1 CDS Runsl_2990 NC_015703.1 3481480 3482487 D PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_3584 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein; hypothetical protein 3481480..3482487 Runella slithyformis DSM 19594 10871522 YP_004656511.1 CDS Runsl_2991 NC_015703.1 3482583 3484952 D PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG4315 conserved hypothetical protein; InterPro IPR005297; KEGG: dfe:Dfer_3560 secreted repeat of unknown function; SPTR: uncharacterized protein; OmpA/MotB domain-containing protein 3482583..3484952 Runella slithyformis DSM 19594 10871523 YP_004656512.1 CDS Runsl_2992 NC_015703.1 3485159 3485986 D PFAM: Secreted repeat of unknown function; hypothetical protein 3485159..3485986 Runella slithyformis DSM 19594 10871524 YP_004656513.1 CDS Runsl_2993 NC_015703.1 3486237 3486443 D Prodigal; manually curated; hypothetical protein 3486237..3486443 Runella slithyformis DSM 19594 10871525 YP_004656514.1 CDS Runsl_2996 NC_015703.1 3487995 3488849 R PFAM: Transposase DDE domain; COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated; transposase IS4 family protein complement(3487995..3488849) Runella slithyformis DSM 19594 10871528 YP_004656515.1 CDS Runsl_2997 NC_015703.1 3488902 3489913 R PFAM: Rhodopirellula transposase; 'Paired box' domain; Prodigal; manually curated; transposase complement(join(3488902..3489447,3489449..3489913)) Runella slithyformis DSM 19594 10871529 YP_004656516.1 CDS Runsl_2999 NC_015703.1 3492412 3493734 D secretion protein HlyD family protein 3492412..3493734 Runella slithyformis DSM 19594 10871531 YP_004656517.1 CDS Runsl_3000 NC_015703.1 3493854 3494120 D KEGG: bmq:BMQ_2169 beta-galactosidase; SPTR: Beta-galactosidase; hypothetical protein 3493854..3494120 Runella slithyformis DSM 19594 10871532 YP_004656518.1 CDS Runsl_3001 NC_015703.1 3494211 3495917 D InterPro IPR019861; KEGG: dfe:Dfer_5751 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; hypothetical protein 3494211..3495917 Runella slithyformis DSM 19594 10871533 YP_004656519.1 CDS Runsl_3002 NC_015703.1 3496158 3497066 D PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein; COGs: COG0567 2-oxoglutarate dehydrogenase complex dehydrogenase (E1); InterPro IPR011603:IPR001017:IPR005475; KEGG: lby:Lbys_3488 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component; PRIAM: Oxoglutarate dehydrogenase (succinyl-transferring); SPTR: 2-oxoglutarate dehydrogenase, E1 subunit; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; hypothetical protein 3496158..3497066 Runella slithyformis DSM 19594 10871534 YP_004656520.1 CDS Runsl_3003 NC_015703.1 3497152 3499926 D PFAM: Dehydrogenase E1 component; Transketolase, pyrimidine binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR006255:IPR000089:IPR004167:IPR001078; KEGG: sli:Slin_5028 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; PRIAM: Dihydrolipoyllysine-residue succinyltransferase; SPTR: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; TIGRFAM: Dihydrolipoamide succinyltransferase; 2-oxoglutarate dehydrogenase E1 3497152..3499926 Runella slithyformis DSM 19594 10871535 YP_004656521.1 CDS Runsl_3004 NC_015703.1 3500026 3501618 D PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR006258:IPR013027:IPR004099; KEGG: sli:Slin_6035 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; PRIAM: Dihydrolipoyl dehydrogenase; SPTR: Dihydrolipoyl dehydrogenase; TIGRFAM: Dihydrolipoamide dehydrogenase; 2-oxoglutarate dehydrogenase E2 3500026..3501618 Runella slithyformis DSM 19594 10871536 YP_004656522.1 CDS Runsl_3005 NC_015703.1 3501737 3503140 D PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase; COGs: COG4268 McrBC 5-methylcytosine restriction system component; InterPro IPR019292; KEGG: sli:Slin_2471 5-methylcytosine restriction system component-like protein; PFAM: 5-methylcytosine restriction system component-like protein; SPTR: 5-methylcytosine restriction system component-like protein; dihydrolipoamide dehydrogenase 3501737..3503140 Runella slithyformis DSM 19594 10871537 YP_004656523.1 CDS Runsl_3006 NC_015703.1 3503185 3504456 R PFAM: McrBC 5-methylcytosine restriction system component; HAMAP: Uncharacterised protein family UPF0090, bacteria; InterPro IPR003728:IPR020790; KEGG: lby:Lbys_1583 hypothetical protein; PFAM: Uncharacterised protein family UPF0090; SPTR: Ribosome maturation factor rimP; 5-methylcytosine restriction system component-like protein complement(3503185..3504456) Runella slithyformis DSM 19594 10871538 YP_004656524.1 CDS Runsl_3007 NC_015703.1 3504570 3505037 D PFAM: Uncharacterised BCR, YhbC family COG0779; LSM domain; COGs: COG0195 Transcription elongation factor; InterPro IPR010213:IPR013735:IPR004087; KEGG: sli:Slin_1214 NusA antitermination factor; PFAM: Transcription factor NusA, N-terminal; SPTR: NusA antitermination factor; TIGRFAM: Transcription termination factor NusA; ribosome maturation factor rimP 3504570..3505037 Runella slithyformis DSM 19594 10871539 YP_004656525.1 CDS Runsl_3008 NC_015703.1 3505175 3506419 D PFAM: NusA N-terminal domain; TIGRFAM: transcription termination factor NusA; COGs: COG0532 Translation initiation factor 2 (IF-2; GTPase); InterProIPR000178:IPR005225:IPR006847:IPR000795:IPR 004161; KEGG: dfe:Dfer_0032 translation initiation factor IF-2; PFAM: Protein synthesis factor, GTP-binding; Translation initiation factor IF-2, N-terminal; Translation elongation factor EFTu/EF1A, domain 2; SPTR: Translation initiation factor IF-2; TIGRFAM: Initiation factor 2; Small GTP-binding protein; NusA antitermination factor 3505175..3506419 Runella slithyformis DSM 19594 10871540 YP_004656526.1 CDS Runsl_3009 NC_015703.1 3506607 3509906 D PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2; InterPro IPR003675; KEGG: dfe:Dfer_2995 abortive infection protein; PFAM: Abortive infection protein; SPTR: Abortive infection protein; translation initiation factor IF-2 3506607..3509906 Runella slithyformis DSM 19594 10871541 YP_004656527.1 CDS Runsl_3010 NC_015703.1 3510070 3511059 D PFAM: CAAX amino terminal protease; KEGG: dfe:Dfer_2994 hypothetical protein; SPTR: uncharacterized protein; abortive infection protein 3510070..3511059 Runella slithyformis DSM 19594 10871542 YP_004656528.1 CDS Runsl_3011 NC_015703.1 3511028 3511240 D COGs: COG0575 CDP-diglyceride synthetase; InterPro IPR000374; KEGG: dfe:Dfer_2993 phosphatidate cytidylyltransferase; PFAM: Phosphatidate cytidylyltransferase; SPTR: Phosphatidate cytidylyltransferase; hypothetical protein 3511028..3511240 Runella slithyformis DSM 19594 10871543 YP_004656529.1 CDS Runsl_3012 NC_015703.1 3511221 3512054 D PFAM: Cytidylyltransferase; KEGG: sli:Slin_2396 hypothetical protein; SPTR: uncharacterized protein; phosphatidate cytidylyltransferase 3511221..3512054 Runella slithyformis DSM 19594 10871544 YP_004656530.1 CDS Runsl_3013 NC_015703.1 3512109 3512837 D COGs: COG2908 conserved hypothetical protein; InterPro IPR004843; KEGG: lby:Lbys_2996 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; hypothetical protein 3512109..3512837 Runella slithyformis DSM 19594 10871545 YP_004656531.1 CDS Runsl_3014 NC_015703.1 3512841 3513662 R PFAM: Calcineurin-like phosphoesterase; InterPro IPR001538; KEGG: shg:Sph21_1644 mannose-6-phosphate isomerase type II; PFAM: Mannose-6-phosphate isomerase, type II, C-terminal; SPTR: Mannose-6-phosphate isomerase; metallophosphoesterase complement(3512841..3513662) Runella slithyformis DSM 19594 10871546 YP_004656532.1 CDS Runsl_3015 NC_015703.1 3513750 3514256 D PFAM: Mannose-6-phosphate isomerase; KEGG: dfe:Dfer_4996 metal-dependent hydrolase; SPTR: Metal-dependent hydrolase; mannose-6-phosphate isomerase 3513750..3514256 Runella slithyformis DSM 19594 10871547 YP_004656533.1 CDS Runsl_3016 NC_015703.1 3514287 3514823 D COGs: COG3339 conserved hypothetical protein; InterPro IPR010652; KEGG: sli:Slin_4497 hypothetical protein; PFAM: Protein of unknown function DUF1232; SPTR: uncharacterized protein; metal-dependent hydrolase 3514287..3514823 Runella slithyformis DSM 19594 10871548 YP_004656534.1 CDS Runsl_3017 NC_015703.1 3514935 3515375 D PFAM: Protein of unknown function (DUF1232); HAMAP: Twin-arginine translocation protein TatA/E; InterPro IPR006312:IPR003369; KEGG: dfe:Dfer_4461 twin-arginine translocation protein, TatA/E family subunit; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106; SPTR: Twin-arginine translocation protein, TatA/E family subunit; TIGRFAM: Twin-arginine translocation protein TatA/E; hypothetical protein 3514935..3515375 Runella slithyformis DSM 19594 10871549 YP_004656535.1 CDS Runsl_3018 NC_015703.1 3515557 3515760 D PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family; COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit; InterPro IPR004412:IPR000120; KEGG: sli:Slin_4499 glutamyl-tRNA(Gln) amidotransferase, subunit alpha; PFAM: Amidase; SPTR: Glutamyl-tRNA(Gln) amidotransferase subunit A; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit; Sec-independent protein translocase tatA/E-like protein 3515557..3515760 Runella slithyformis DSM 19594 10871550 YP_004656536.1 CDS Runsl_3019 NC_015703.1 3515888 3517378 D PFAM: Amidase; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit; COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258:IPR018392:IPR002482; KEGG: dfe:Dfer_4463 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Lytic transglycosylase catalytic; glutamyl-tRNA(Gln) amidotransferase subunit A 3515888..3517378 Runella slithyformis DSM 19594 10871551 YP_004656537.1 CDS Runsl_3020 NC_015703.1 3517428 3518852 D PFAM: Transglycosylase SLT domain; LysM domain; COGs: COG1981 membrane protein; InterPro IPR014351:IPR005265; KEGG: lby:Lbys_1279 uncharacterized protein family upf0093; PFAM: Uncharacterised protein family UPF0093; SPTR: Uncharacterized protein family UPF0093; TIGRFAM: Conserved hypothetical protein CHP00701; lytic transglycosylase 3517428..3518852 Runella slithyformis DSM 19594 10871552 YP_004656538.1 CDS Runsl_3021 NC_015703.1 3518940 3519473 D PFAM: Uncharacterised protein family (UPF0093); TIGRFAM: TIGR00701 family protein; COGs: COG3440 restriction endonuclease; KEGG: sli:Slin_4171 restriction endonuclease; SPTR: restriction endonuclease; hypothetical protein 3518940..3519473 Runella slithyformis DSM 19594 10871553 YP_004656539.1 CDS Runsl_3022 NC_015703.1 3519525 3520304 D COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: sli:Slin_5998 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; PRIAM: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; SPTR: Oxidoreductase domain protein; restriction endonuclease 3519525..3520304 Runella slithyformis DSM 19594 10871554 YP_004656540.1 CDS Runsl_3023 NC_015703.1 3520546 3521538 D PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; InterPro IPR007492; KEGG: cao:Celal_4060 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: two-component response regulator; trans-1,2-dihydrobenzene-1,2-diol dehydrogenase 3520546..3521538 Runella slithyformis DSM 19594 10871555 YP_004656541.1 CDS Runsl_3024 NC_015703.1 3521561 3522439 D PFAM: LytTr DNA-binding domain; KEGG: chu:CHU_2272 hypothetical protein; SPTR: uncharacterized protein; LytTr DNA-binding protein 3521561..3522439 Runella slithyformis DSM 19594 10871556 YP_004656542.1 CDS Runsl_3025 NC_015703.1 3522558 3523259 D KEGG: tbr:Tb927.7.810 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3522558..3523259 Runella slithyformis DSM 19594 10871557 YP_004656543.1 CDS Runsl_3026 NC_015703.1 3523278 3523757 R COGs: COG5002 Signal transduction histidine kinase; InterProIPR003660:IPR013767:IPR003661:IPR003594:IPR 000014; KEGG: sli:Slin_0068 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; PAS fold; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; PAS; SPTR: PAS/PAC sensor signal transduction histidine kinase; hypothetical protein complement(3523278..3523757) Runella slithyformis DSM 19594 10871558 YP_004656544.1 CDS Runsl_3027 NC_015703.1 3523858 3525555 R PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR003852; KEGG: cpi:Cpin_3612 osmosensitive K channel signal transduction histidine kinase, sensor subunit KdpD; PFAM: Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal; SPTR: Osmosensitive K channel signal transduction histidine kinase, sensor subunit KdpD; multi-sensor signal transduction histidine kinase complement(3523858..3525555) Runella slithyformis DSM 19594 10871559 YP_004656545.1 CDS Runsl_3028 NC_015703.1 3525597 3526724 R PFAM: Universal stress protein family; Osmosensitive K+ channel His kinase sensor domain; KEGG: chu:CHU_1985 hypothetical protein; SPTR: uncharacterized protein; osmosensitive K+ channel signal transduction histidine kinase, sensor subunit KdpD complement(3525597..3526724) Runella slithyformis DSM 19594 10871560 YP_004656546.1 CDS Runsl_3029 NC_015703.1 3526741 3527817 R COGs: COG2156 K+-transporting ATPase c chain; HAMAP: Potassium transporting ATPase, C subunit; InterPro IPR003820; KEGG: sli:Slin_0065 potassium ABC transporter ATPase; PFAM: Potassium transporting ATPase, C subunit; PRIAM: Potassium-transporting ATPase; SPTR: Potassium-transporting ATPase C chain; TIGRFAM: Potassium transporting ATPase, C subunit; hypothetical protein complement(3526741..3527817) Runella slithyformis DSM 19594 10871561 YP_004656547.1 CDS Runsl_3030 NC_015703.1 3527902 3528465 R PFAM: K+-transporting ATPase, c chain; TIGRFAM: K+-transporting ATPase, C subunit; COGs: COG2216 High-affinity K+ transport system ATPase chain B; HAMAP: Potassium-transporting ATPase, B chain; InterPro IPR006391:IPR001757:IPR008250:IPR005834; KEGG: dfe:Dfer_0376 K+-transporting ATPase, B subunit; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Potassium-transporting ATPase B chain; TIGRFAM: Potassium-transporting ATPase, B chain; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; potassium-transporting ATPase subunit C complement(3527902..3528465) Runella slithyformis DSM 19594 10871562 YP_004656548.1 CDS Runsl_3031 NC_015703.1 3528501 3530555 R PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; KEGG: sli:Slin_6261 hypothetical protein; SPTR: uncharacterized protein; potassium-transporting ATPase subunit B complement(3528501..3530555) Runella slithyformis DSM 19594 10871563 YP_004656549.1 CDS Runsl_3032 NC_015703.1 3530591 3530890 D KEGG: tko:TK0310 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3530591..3530890 Runella slithyformis DSM 19594 10871564 YP_004656550.1 CDS Runsl_3033 NC_015703.1 3530890 3531246 D COGs: COG2060 K+-transporting ATPase A chain; HAMAP: ATPase, K+ transporting, A subunit; InterPro IPR004623; KEGG: fjo:Fjoh_1975 potassium-transporting ATPase subunit A; PFAM: ATPase, K+ transporting, A subunit; PRIAM: Potassium-transporting ATPase; SPTR: Potassium-transporting ATPase A chain; TIGRFAM: ATPase, K+ transporting, A subunit; hypothetical protein 3530890..3531246 Runella slithyformis DSM 19594 10871565 YP_004656551.1 CDS Runsl_3034 NC_015703.1 3531233 3532987 R PFAM: Potassium-transporting ATPase A subunit; TIGRFAM: K+-transporting ATPase, KdpA; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR002078:IPR002197:IPR003593; KEGG: sli:Slin_0059 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family; potassium-transporting ATPase subunit A complement(3531233..3532987) Runella slithyformis DSM 19594 10871566 YP_004656552.1 CDS Runsl_3035 NC_015703.1 3533401 3534732 R PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; COGs: COG1210 UDP-glucose pyrophosphorylase; InterPro IPR005771:IPR005835; KEGG: dfe:Dfer_4625 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: UTP--glucose-1-phosphate uridylyltransferase; SPTR: UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; Fis family transcriptional regulator complement(3533401..3534732) Runella slithyformis DSM 19594 10871567 YP_004656553.1 CDS Runsl_3036 NC_015703.1 3534807 3535682 R PFAM: Nucleotidyl transferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: dfe:Dfer_3653 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28; UTP-glucose-1-phosphate uridylyltransferase complement(3534807..3535682) Runella slithyformis DSM 19594 10871568 YP_004656554.1 CDS Runsl_3037 NC_015703.1 3535747 3537231 R PFAM: Peptidase M28; COGs: COG0083 Homoserine kinase; HAMAP: Homoserine kinase; InterPro IPR000870:IPR006204:IPR013750; KEGG: dfe:Dfer_3151 homoserine kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal; PRIAM: Homoserine kinase; SPTR: Homoserine kinase; TIGRFAM: Homoserine kinase; peptidase M28 complement(3535747..3537231) Runella slithyformis DSM 19594 10871569 YP_004656555.1 CDS Runsl_3038 NC_015703.1 3537451 3538386 R PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: homoserine kinase; COGs: COG1895 conserved hypothetical protein related to C-terminal domain of eukaryotic chaperone SACSIN; InterPro IPR007842; KEGG: sli:Slin_2849 HEPN domain protein; PFAM: HEPN; SPTR: HEPN domain protein; homoserine kinase complement(3537451..3538386) Runella slithyformis DSM 19594 10871570 YP_004656556.1 CDS Runsl_3039 NC_015703.1 3538467 3538784 R PFAM: HEPN domain; InterPro IPR002934; KEGG: sli:Slin_0018 DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase; SPTR: DNA polymerase beta domain protein region; HEPN domain-containing protein complement(3538467..3538784) Runella slithyformis DSM 19594 10871571 YP_004656557.1 CDS Runsl_3040 NC_015703.1 3538781 3539116 R PFAM: Nucleotidyltransferase domain; COGs: COG0657 Esterase/lipase; KEGG: dfe:Dfer_3894 esterase/lipase-like protein; SPTR: Esterase/lipase-like protein; DNA polymerase beta domain-containing protein complement(3538781..3539116) Runella slithyformis DSM 19594 10871572 YP_004656558.1 CDS Runsl_3041 NC_015703.1 3539389 3540294 R PFAM: Prolyl oligopeptidase; COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; InterPro IPR000550; KEGG: sli:Slin_4404 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PRIAM:2-amino-4-hydroxy-6-hydroxymethyldihydropteri dinediphosphokinase; SPTR:2-amino-4-hydroxy-6-hydroxymethyldihydropterid inepyrophosphokinase; TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; esterase complement(3539389..3540294) Runella slithyformis DSM 19594 10871573 YP_004656559.1 CDS Runsl_3042 NC_015703.1 3540377 3540865 D PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; COGs: COG1231 Monoamine oxidase; InterPro IPR002937; KEGG: ddi:DDB_G0289265 hypothetical protein; PFAM: Amine oxidase; SPTR: Amine oxidase, flavin-containing superfamily; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3540377..3540865 Runella slithyformis DSM 19594 10871574 YP_004656560.1 CDS Runsl_3043 NC_015703.1 3540965 3542335 D PFAM: Flavin containing amine oxidoreductase; COGs: COG0606 ATPase with chaperone activity; InterPro IPR004482:IPR000523:IPR003593; KEGG: sli:Slin_4052 Mg chelatase, subunit ChlI; PFAM: Magnesium chelatase, ChlI subunit; SMART: ATPase, AAA+ type, core; SPTR: Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein; amine oxidase 3540965..3542335 Runella slithyformis DSM 19594 10871575 YP_004656561.1 CDS Runsl_3044 NC_015703.1 3542400 3543941 R PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein; KEGG: dfe:Dfer_3604 hypothetical protein; SPTR: uncharacterized protein; Mg chelatase subunit ChlI complement(3542400..3543941) Runella slithyformis DSM 19594 10871576 YP_004656562.1 CDS Runsl_3045 NC_015703.1 3544146 3544619 D COGs: COG0514 Superfamily II DNA helicase; InterProIPR006293:IPR018329:IPR011545:IPR001650:IPR 018982:IPR002121:IPR014001; KEGG: sli:Slin_5963 ATP-dependent DNA helicase RecQ; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type, N-terminal; hypothetical protein 3544146..3544619 Runella slithyformis DSM 19594 10871577 YP_004656563.1 CDS Runsl_3046 NC_015703.1 3544952 3547192 D PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; COGs: COG0151 Phosphoribosylamine-glycine ligase; HAMAP: Phosphoribosylglycinamide synthetase; InterPro IPR000115:IPR020562:IPR020561:IPR020560; KEGG: dfe:Dfer_3601 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; PRIAM: Phosphoribosylamine--glycine ligase; SPTR: Phosphoribosylamine/glycine ligase; TIGRFAM: Phosphoribosylglycinamide synthetase; ATP-dependent DNA helicase RecQ 3544952..3547192 Runella slithyformis DSM 19594 10871578 YP_004656564.1 CDS Runsl_3047 NC_015703.1 3547295 3548584 D PFAM: Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase; COGs: COG1774 Uncharacterized homolog of PSP1; InterPro IPR007557; KEGG: sli:Slin_5965 PSP1 domain protein; PFAM: PSP1, C-terminal; SPTR: PSP1 domain protein; phosphoribosylamine--glycine ligase 3547295..3548584 Runella slithyformis DSM 19594 10871579 YP_004656565.1 CDS Runsl_3048 NC_015703.1 3548686 3549936 D PFAM: PSP1 C-terminal conserved region; InterPro IPR001387; KEGG: hor:Hore_07480 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix domain protein; PSP1 domain-containing protein 3548686..3549936 Runella slithyformis DSM 19594 10871580 YP_004656566.1 CDS Runsl_3049 NC_015703.1 3550012 3550392 R PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein complement(3550012..3550392) Runella slithyformis DSM 19594 10871581 YP_004656567.1 CDS Runsl_3050 NC_015703.1 3550665 3551531 D Prodigal; manually curated; hypothetical protein 3550665..3551531 Runella slithyformis DSM 19594 10871582 YP_004656568.1 CDS Runsl_3052 NC_015703.1 3552147 3553778 D PFAM: Vitamin K epoxide reductase; peptidase C39 bacteriocin processing 3552147..3553778 Runella slithyformis DSM 19594 10871584 YP_004656569.1 CDS Runsl_3053 NC_015703.1 3554165 3554515 D PFAM: delta endotoxin; COGs: COG0694 Thioredoxin-like protein and domains; InterPro IPR014824:IPR001075; KEGG: dfe:Dfer_4882 nitrogen-fixing NifU domain protein; PFAM: NIF system FeS cluster assembly, NifU, C-terminal; NIF system FeS cluster assembly, NifU-like scaffold, N-terminal; SPTR: Nitrogen-fixing NifU domain protein; hypothetical protein 3554165..3554515 Runella slithyformis DSM 19594 10871585 YP_004656570.1 CDS Runsl_3054 NC_015703.1 3554761 3555348 D PFAM: Scaffold protein Nfu/NifU N terminal; NifU-like domain; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: sli:Slin_4902 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; SPTR: N-acetylmuramoyl-L-alanine amidase; nitrogen-fixing NifU domain-containing protein 3554761..3555348 Runella slithyformis DSM 19594 10871586 YP_004656571.1 CDS Runsl_3055 NC_015703.1 3555584 3556369 D PFAM: N-acetylmuramoyl-L-alanine amidase; COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: dfe:Dfer_3636 mammalian cell entry related domain protein; PFAM: Mammalian cell entry related; SPTR: Mammalian cell entry related domain protein; cell wall hydrolase/autolysin 3555584..3556369 Runella slithyformis DSM 19594 10871587 YP_004656572.1 CDS Runsl_3056 NC_015703.1 3556459 3557421 D PFAM: mce related protein; COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: dfe:Dfer_4444 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein; SPTR: SNARE associated Golgi protein; mammalian cell entry domain-containing protein 3556459..3557421 Runella slithyformis DSM 19594 10871588 YP_004656573.1 CDS Runsl_3057 NC_015703.1 3557603 3558268 R PFAM: SNARE associated Golgi protein; COGs: COG1809 conserved hypothetical protein; InterPro IPR003830; KEGG: dfe:Dfer_4445 phosphosulfolactate synthase; PFAM: (2R)-phospho-3-sulpholactate synthase, ComA; PRIAM: Phosphosulfolactate synthase; SPTR: Phosphosulfolactate synthase; hypothetical protein complement(3557603..3558268) Runella slithyformis DSM 19594 10871589 YP_004656574.1 CDS Runsl_3058 NC_015703.1 3558316 3559107 R PFAM: (2R)-phospho-3-sulfolactate synthase (ComA); COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; InterPro IPR001017:IPR005475:IPR005476; KEGG: dfe:Dfer_3632 transketolase domain protein; PFAM: Transketolase, C-terminal; Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component; SPTR: Transketolase domain protein; phosphosulfolactate synthase complement(3558316..3559107) Runella slithyformis DSM 19594 10871590 YP_004656575.1 CDS Runsl_3059 NC_015703.1 3559389 3561797 R PFAM: Dehydrogenase E1 component; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; InterPro IPR011467; KEGG: sli:Slin_4915 hypothetical protein; PFAM: Protein of unknown function DUF1573; SPTR: uncharacterized protein; transketolase domain-containing protein complement(3559389..3561797) Runella slithyformis DSM 19594 10871591 YP_004656576.1 CDS Runsl_3060 NC_015703.1 3562070 3562474 D PFAM: Protein of unknown function (DUF1573); hypothetical protein 3562070..3562474 Runella slithyformis DSM 19594 10871592 YP_004656577.1 CDS Runsl_3061 NC_015703.1 3562561 3562707 D COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sli:Slin_4919 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; hypothetical protein 3562561..3562707 Runella slithyformis DSM 19594 10871593 YP_004656578.1 CDS Runsl_3062 NC_015703.1 3562677 3563882 D PFAM: Beta-lactamase; COGs: COG2367 Beta-lactamase class A; KEGG: sli:Slin_5194 beta-lactamase; SPTR: Beta-lactamase; beta-lactamase 3562677..3563882 Runella slithyformis DSM 19594 10871594 YP_004656579.1 CDS Runsl_3063 NC_015703.1 3563902 3564783 R COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: sli:Slin_2738 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; beta-lactamase complement(3563902..3564783) Runella slithyformis DSM 19594 10871595 YP_004656580.1 CDS Runsl_3064 NC_015703.1 3564802 3566925 R PFAM: OmpA family; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: sli:Slin_1204 efflux transporter RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; OmpA/MotB domain-containing protein complement(3564802..3566925) Runella slithyformis DSM 19594 10871596 YP_004656581.1 CDS Runsl_3065 NC_015703.1 3567058 3568458 R PFAM: HlyD family secretion protein; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_2866 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; RND family efflux transporter MFP subunit complement(3567058..3568458) Runella slithyformis DSM 19594 10871597 YP_004656582.1 CDS Runsl_3066 NC_015703.1 3568559 3570013 R PFAM: Outer membrane efflux protein; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: bld:BLi00328 hypothetical protein; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; outer membrane efflux protein complement(3568559..3570013) Runella slithyformis DSM 19594 10871598 YP_004656583.1 CDS Runsl_3067 NC_015703.1 3570129 3571649 R PFAM: Beta-lactamase; Domain of unknown function (DUF3471); InterPro IPR002860; KEGG: mtt:Ftrac_2455 hypothetical protein; PFAM: BNR repeat; SPTR: BNR/Asp-box repeat domain protein; beta-lactamase complement(3570129..3571649) Runella slithyformis DSM 19594 10871599 YP_004656584.1 CDS Runsl_3068 NC_015703.1 3571721 3574855 R PFAM: BNR/Asp-box repeat; COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: sli:Slin_6519 MATE efflux family protein; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; glycosyl hydrolase family protein complement(3571721..3574855) Runella slithyformis DSM 19594 10871600 YP_004656585.1 CDS Runsl_3069 NC_015703.1 3574907 3576253 R PFAM: MatE; TIGRFAM: efflux protein, MATE family; MATE efflux family protein complement(3574907..3576253) Runella slithyformis DSM 19594 10871601 YP_004656586.1 CDS Runsl_3070 NC_015703.1 3576296 3576454 R COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; HAMAP: Chaperone protein dnaJ; InterPro IPR012724:IPR001623:IPR001305:IPR002939; KEGG: dfe:Dfer_4973 chaperone protein DnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; Heat shock protein DnaJ, cysteine-rich region; SMART: Heat shock protein DnaJ, N-terminal; SPTR: Chaperone protein DnaJ; TIGRFAM: Chaperone DnaJ; hypothetical protein complement(3576296..3576454) Runella slithyformis DSM 19594 10871602 YP_004656587.1 CDS Runsl_3071 NC_015703.1 3576751 3577905 R PFAM: DnaJ C terminal region; DnaJ central domain (4 repeats); DnaJ domain; TIGRFAM: chaperone protein DnaJ; COGs: COG0576 Molecular chaperone GrpE (heat shock protein); HAMAP: GrpE nucleotide exchange factor; InterPro IPR000740; KEGG: sli:Slin_1520 GrpE protein; PFAM: GrpE nucleotide exchange factor; SPTR: Protein grpE; molecular chaperone DnaJ complement(3576751..3577905) Runella slithyformis DSM 19594 10871603 YP_004656588.1 CDS Runsl_3072 NC_015703.1 3578040 3578588 R PFAM: GrpE; InterPro IPR004365:IPR005135; KEGG: sli:Slin_6007 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; Nucleic acid binding, OB-fold, tRNA/helicase-type; SPTR: Endonuclease/exonuclease/phosphatase; protein grpE complement(3578040..3578588) Runella slithyformis DSM 19594 10871604 YP_004656589.1 CDS Runsl_3073 NC_015703.1 3578757 3581618 D PFAM: Endonuclease/Exonuclease/phosphatase; KEGG: dfe:Dfer_4541 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3578757..3581618 Runella slithyformis DSM 19594 10871605 YP_004656590.1 CDS Runsl_3074 NC_015703.1 3582062 3583159 D COGs: COG1452 Organic solvent tolerance protein OstA; KEGG: dfe:Dfer_3634 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3582062..3583159 Runella slithyformis DSM 19594 10871606 YP_004656591.1 CDS Runsl_3075 NC_015703.1 3583254 3586049 R COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: bch:Bcen2424_5650 sulfatase; PFAM: Sulfatase; SPTR: Sulfatase; hypothetical protein complement(3583254..3586049) Runella slithyformis DSM 19594 10871607 YP_004656592.1 CDS Runsl_3076 NC_015703.1 3586220 3587869 D PFAM: Sulfatase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: dfe:Dfer_5057 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein; sulfatase 3586220..3587869 Runella slithyformis DSM 19594 10871608 YP_004656593.1 CDS Runsl_3077 NC_015703.1 3587936 3589081 D PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; KEGG: dfe:Dfer_0435 hypothetical protein; SPTR: uncharacterized protein; oxidoreductase domain-containing protein 3587936..3589081 Runella slithyformis DSM 19594 10871609 YP_004656594.1 CDS Runsl_3078 NC_015703.1 3589266 3590099 D KEGG: dfe:Dfer_0434 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3589266..3590099 Runella slithyformis DSM 19594 10871610 YP_004656595.1 CDS Runsl_3079 NC_015703.1 3590165 3591361 D InterPro IPR012910:IPR000531; KEGG: sli:Slin_4206 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein 3590165..3591361 Runella slithyformis DSM 19594 10871611 YP_004656596.1 CDS Runsl_3080 NC_015703.1 3591818 3594913 D PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: sli:Slin_4207 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 3591818..3594913 Runella slithyformis DSM 19594 10871612 YP_004656597.1 CDS Runsl_3081 NC_015703.1 3594939 3596309 D PFAM: SusD family; COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814; KEGG: dfe:Dfer_0433 aminotransferase class-III; PFAM: Aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: Aminotransferase class-III; RagB/SusD domain-containing protein 3594939..3596309 Runella slithyformis DSM 19594 10871613 YP_004656598.1 CDS Runsl_3082 NC_015703.1 3596407 3597693 D PFAM: Aminotransferase class-III; COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; HAMAP: Dihydrodipicolinate synthase; InterPro IPR002220:IPR005263; KEGG: dfe:Dfer_5112 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase; SPTR: Dihydrodipicolinate synthase; TIGRFAM: Dihydrodipicolinate synthase subfamily; acetylornithine transaminase 3596407..3597693 Runella slithyformis DSM 19594 10871614 YP_004656599.1 CDS Runsl_3083 NC_015703.1 3597782 3598666 D PFAM: Dihydrodipicolinate synthetase; TIGRFAM: dihydrodipicolinate synthase; InterPro IPR000834; KEGG: sli:Slin_2535 peptidase M14 carboxypeptidase A; PFAM: Peptidase M14, carboxypeptidase A; SMART: Peptidase M14, carboxypeptidase A; SPTR: Peptidase M14 carboxypeptidase A; dihydrodipicolinate synthase 3597782..3598666 Runella slithyformis DSM 19594 10871615 YP_004656600.1 CDS Runsl_3084 NC_015703.1 3598774 3601302 R PFAM: Zinc carboxypeptidase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: dfe:Dfer_4753 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; PRIAM: Glucose-fructose oxidoreductase; SPTR: Oxidoreductase domain protein; peptidase M14 carboxypeptidase A complement(3598774..3601302) Runella slithyformis DSM 19594 10871616 YP_004656601.1 CDS Runsl_3085 NC_015703.1 3601453 3602553 D PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; glucose-fructose oxidoreductase 3601453..3602553 Runella slithyformis DSM 19594 10871617 YP_004656602.1 CDS Runsl_3086 NC_015703.1 3602630 3602893 R KEGG: lby:Lbys_2890 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3602630..3602893) Runella slithyformis DSM 19594 10871618 YP_004656603.1 CDS Runsl_3087 NC_015703.1 3603284 3603757 D KEGG: cpi:Cpin_0629 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3603284..3603757 Runella slithyformis DSM 19594 10871619 YP_004656604.1 CDS Runsl_3088 NC_015703.1 3603937 3604638 D PFAM: TAT (twin-arginine translocation) pathway signal sequence; KEGG: cpi:Cpin_0630 hypothetical protein; SPTR: Dessication-associated protein; hypothetical protein 3603937..3604638 Runella slithyformis DSM 19594 10871620 YP_004656605.1 CDS Runsl_3089 NC_015703.1 3604652 3605485 D Prodigal; manually curated; hypothetical protein 3604652..3605485 Runella slithyformis DSM 19594 10871621 YP_004656606.1 CDS Runsl_3091 NC_015703.1 3605981 3606439 R PFAM: Acetyltransferase (GNAT) family; COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: cpi:Cpin_6476 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; N-acetyltransferase GCN5 complement(3605981..3606439) Runella slithyformis DSM 19594 10871623 YP_004656607.1 CDS Runsl_3092 NC_015703.1 3606469 3607302 R PFAM: Carbon-nitrogen hydrolase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(3606469..3607302) Runella slithyformis DSM 19594 10871624 YP_004656608.1 CDS Runsl_3093 NC_015703.1 3607558 3607728 R COGs: COG0376 Catalase (peroxidase I); HAMAP: Catalase-peroxidase haem; InterPro IPR000763:IPR002016; KEGG: sli:Slin_5085 catalase/peroxidase HPI; PFAM: Haem peroxidase, plant/fungal/bacterial; PRIAM: Catalase; SPTR: Catalase-peroxidase; TIGRFAM: Catalase-peroxidase haem; hypothetical protein complement(3607558..3607728) Runella slithyformis DSM 19594 10871625 YP_004656609.1 CDS Runsl_3094 NC_015703.1 3607768 3610011 D PFAM: Peroxidase; TIGRFAM: catalase/peroxidase HPI; InterPro IPR003838; KEGG: sli:Slin_4641 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; catalase 3607768..3610011 Runella slithyformis DSM 19594 10871626 YP_004656610.1 CDS Runsl_3095 NC_015703.1 3610326 3612737 D PFAM: Predicted permease; COGs: COG0587 DNA polymerase III alpha subunit; InterProIPR003141:IPR004013:IPR011708:IPR004365:IPR 004805; KEGG: dfe:Dfer_0427 DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: DNA-directed DNA polymerase; SMART: Polymerase/histidinol phosphatase, N-terminal; SPTR: DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; hypothetical protein 3610326..3612737 Runella slithyformis DSM 19594 10871627 YP_004656611.1 CDS Runsl_3096 NC_015703.1 3612851 3616555 R PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc); DNA polymerase III subunit alpha complement(3612851..3616555) Runella slithyformis DSM 19594 10871628 YP_004656612.1 CDS Runsl_3097 NC_015703.1 3616778 3616900 R KEGG: mar:MAE_51780 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3616778..3616900) Runella slithyformis DSM 19594 10871629 YP_004656613.1 CDS Runsl_3098 NC_015703.1 3617093 3618535 R manually curated; hypothetical protein complement(3617093..3618535) Runella slithyformis DSM 19594 10871630 YP_004656614.1 CDS Runsl_3100 NC_015703.1 3618779 3620941 R PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG3808 Inorganic pyrophosphatase; HAMAP: Pyrophosphate-energized proton pump; InterPro IPR004131:IPR006665; KEGG: lby:Lbys_1603 v-type h(+)-translocating pyrophosphatase; PFAM: Inorganic H+ pyrophosphatase; Outer membrane protein, OmpA/MotB, C-terminal; PRIAM: Inorganic diphosphatase; SPTR: V-type H(+)-translocating pyrophosphatase; TIGRFAM: Inorganic H+ pyrophosphatase; integral membrane sensor signal transduction histidine kinase complement(3618779..3620941) Runella slithyformis DSM 19594 10871632 YP_004656615.1 CDS Runsl_3101 NC_015703.1 3621299 3623947 D PFAM: Inorganic H+ pyrophosphatase; OmpA family; TIGRFAM: vacuolar-type H(+)-translocating pyrophosphatase; KEGG: sli:Slin_3024 hypothetical protein; SPTR: uncharacterized protein; pyrophosphate-energized proton pump 3621299..3623947 Runella slithyformis DSM 19594 10871633 YP_004656616.1 CDS Runsl_3102 NC_015703.1 3624140 3624487 D Prodigal; manually curated; hypothetical protein 3624140..3624487 Runella slithyformis DSM 19594 10871634 YP_004656617.1 CDS Runsl_3104 NC_015703.1 3624665 3625639 R PFAM: Polyprenyl synthetase; COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: sli:Slin_3007 patatin; PFAM: Patatin; SPTR: Patatin; trans-hexaprenyltranstransferase complement(3624665..3625639) Runella slithyformis DSM 19594 10871636 YP_004656618.1 CDS Runsl_3105 NC_015703.1 3625971 3626954 D PFAM: Patatin-like phospholipase; InterPro IPR000182; KEGG: sli:Slin_1389 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; patatin 3625971..3626954 Runella slithyformis DSM 19594 10871637 YP_004656619.1 CDS Runsl_3106 NC_015703.1 3626990 3627439 D PFAM: Acetyltransferase (GNAT) family; InterPro IPR001087; KEGG: sli:Slin_1223 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family; N-acetyltransferase GCN5 3626990..3627439 Runella slithyformis DSM 19594 10871638 YP_004656620.1 CDS Runsl_3107 NC_015703.1 3627469 3628449 R PFAM: GDSL-like Lipase/Acylhydrolase; G-D-S-L family lipolytic protein complement(3627469..3628449) Runella slithyformis DSM 19594 10871639 YP_004656621.1 CDS Runsl_3108 NC_015703.1 3628808 3629158 D COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR001789:IPR001610:IPR003661:IPR003594:IPR 000014; KEGG: sli:Slin_1036 multi-sensor signal transduction histidine kinase; PFAM: Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SMART: Signal transduction response regulator, receiver region; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; hypothetical protein 3628808..3629158 Runella slithyformis DSM 19594 10871640 YP_004656622.1 CDS Runsl_3109 NC_015703.1 3629477 3631048 D PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0642 Signal transduction histidine kinase; InterProIPR003660:IPR003018:IPR003661:IPR003594:IPR 001789:IPR007891; KEGG: sli:Slin_1035 GAF sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; CHASE3; HAMP linker domain; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; GAF; Signal transduction response regulator, receiver region; SPTR: GAF sensor hybrid histidine kinase; multi-sensor signal transduction histidine kinase 3629477..3631048 Runella slithyformis DSM 19594 10871641 YP_004656623.1 CDS Runsl_3110 NC_015703.1 3631114 3634722 D PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; CHASE3 domain; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: sli:Slin_1034 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; multi-sensor hybrid histidine kinase 3631114..3634722 Runella slithyformis DSM 19594 10871642 YP_004656624.1 CDS Runsl_3111 NC_015703.1 3634735 3635169 D PFAM: Response regulator receiver domain; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterPro IPR000780; KEGG: dfe:Dfer_0391 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase, CheR-type; PRIAM: Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase, CheR-type; SPTR: MCP methyltransferase, CheR-type; response regulator receiver protein 3634735..3635169 Runella slithyformis DSM 19594 10871643 YP_004656625.1 CDS Runsl_3112 NC_015703.1 3635181 3635993 D PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain; COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; InterPro IPR000673; KEGG: sli:Slin_1032 CheB methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; PRIAM: Protein-glutamate methylesterase; SPTR: CheB methylesterase; chemotaxis protein CheR 3635181..3635993 Runella slithyformis DSM 19594 10871644 YP_004656626.1 CDS Runsl_3113 NC_015703.1 3635975 3636562 D PFAM: CheB methylesterase; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: cpi:Cpin_3744 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; chemotaxis protein CheB 3635975..3636562 Runella slithyformis DSM 19594 10871645 YP_004656627.1 CDS Runsl_3114 NC_015703.1 3636569 3636961 D PFAM: Response regulator receiver domain; KEGG: dfe:Dfer_4537 FG-GAP repeat-containing protein; SPTR: FG-GAP repeat-containing protein; response regulator receiver protein 3636569..3636961 Runella slithyformis DSM 19594 10871646 YP_004656628.1 CDS Runsl_3115 NC_015703.1 3637312 3638484 D COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017; KEGG: cpi:Cpin_4922 hypothetical protein; PFAM: Cysteine-rich region, CCG; SPTR: uncharacterized protein; hypothetical protein 3637312..3638484 Runella slithyformis DSM 19594 10871647 YP_004656629.1 CDS Runsl_3116 NC_015703.1 3638563 3639297 D PFAM: Cysteine-rich domain; COGs: COG1139 conserved hypothetical protein containing a ferredoxin-like domain; InterPro IPR003741; KEGG: cpi:Cpin_4921 hypothetical protein; PFAM: Protein of unknown function DUF162; SPTR: uncharacterized protein; hypothetical protein 3638563..3639297 Runella slithyformis DSM 19594 10871648 YP_004656630.1 CDS Runsl_3117 NC_015703.1 3639438 3640802 D PFAM: Domain of unknown function (DUF3390); Uncharacterised ACR, YkgG family COG1556; TIGRFAM: iron-sulfur cluster-binding protein; COGs: COG1556 conserved hypothetical protein; InterPro IPR003741; KEGG: phe:Phep_2948 hypothetical protein; PFAM: Protein of unknown function DUF162; SPTR: uncharacterized protein; lactate utilization protein B/C 3639438..3640802 Runella slithyformis DSM 19594 10871649 YP_004656631.1 CDS Runsl_3118 NC_015703.1 3640953 3641531 D PFAM: Uncharacterised ACR, YkgG family COG1556; KEGG: dfe:Dfer_4410 hypothetical protein; SPTR: uncharacterized protein; lactate utilization protein B/C 3640953..3641531 Runella slithyformis DSM 19594 10871650 YP_004656632.1 CDS Runsl_3119 NC_015703.1 3641649 3643070 D PFAM: Neutral/alkaline non-lysosomal ceramidase; hypothetical protein 3641649..3643070 Runella slithyformis DSM 19594 10871651 YP_004656633.1 CDS Runsl_3120 NC_015703.1 3643970 3644155 R COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: ssm:Spirs_3266 two component transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: uncharacterized protein; hypothetical protein complement(3643970..3644155) Runella slithyformis DSM 19594 10871652 YP_004656634.1 CDS Runsl_3121 NC_015703.1 3644771 3645271 D PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: cno:NT01CX_0386 transcriptional regulatory protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; AraC family transcriptional regulator 3644771..3645271 Runella slithyformis DSM 19594 10871653 YP_004656635.1 CDS Runsl_3122 NC_015703.1 3645926 3646783 D PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC family transcriptional regulator 3645926..3646783 Runella slithyformis DSM 19594 10871654 YP_004656636.1 CDS Runsl_3123 NC_015703.1 3646993 3647097 R COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR003594; KEGG: sli:Slin_1040 response regulator receiver sensor signal transduction histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; SPTR: Response regulator receiver sensor signal transduction histidine kinase; hypothetical protein complement(3646993..3647097) Runella slithyformis DSM 19594 10871655 YP_004656637.1 CDS Runsl_3124 NC_015703.1 3647113 3648237 D PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR018060:IPR000005; KEGG: sli:Slin_2666 AraC family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Helix-turn-helix, AraC type; SMART: Signal transduction response regulator, receiver region; Helix-turn-helix, AraC domain; SPTR: Two component transcriptional regulator, AraC family; response regulator receiver sensor signal transduction histidine kinase 3647113..3648237 Runella slithyformis DSM 19594 10871656 YP_004656638.1 CDS Runsl_3125 NC_015703.1 3648354 3649133 D PFAM: Response regulator receiver domain; Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: tva:TVAG_355490 viral A-type inclusion protein; AraC family transcriptional regulator 3648354..3649133 Runella slithyformis DSM 19594 10871657 YP_004656639.1 CDS Runsl_3126 NC_015703.1 3649571 3650356 D COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 013767:IPR013655:IPR013656; KEGG: sli:Slin_0618 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold-4; PAS fold-3; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; hypothetical protein 3649571..3650356 Runella slithyformis DSM 19594 10871658 YP_004656640.1 CDS Runsl_3127 NC_015703.1 3650928 3653951 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system; InterPro IPR005151:IPR011659; KEGG: cao:Celal_1779 peptidase S41; PFAM: Peptidase S41; WD40-like Beta Propeller; SMART: Peptidase S41; SPTR: Peptidase S41; PAS/PAC sensor signal transduction histidine kinase 3650928..3653951 Runella slithyformis DSM 19594 10871659 YP_004656641.1 CDS Runsl_3128 NC_015703.1 3654249 3657566 R PFAM: WD40-like Beta Propeller Repeat; Peptidase S41; COGs: COG3569 Topoisomerase IB; KEGG: psn:Pedsa_1825 DNA topoisomerase; SPTR: DNA topoisomerase IB (Poxvirus type); peptidase S41 complement(3654249..3657566) Runella slithyformis DSM 19594 10871660 YP_004656642.1 CDS Runsl_3129 NC_015703.1 3657653 3658759 R PFAM: Eukaryotic DNA topoisomerase I, catalytic core; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_0261 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; DNA topoisomerase complement(3657653..3658759) Runella slithyformis DSM 19594 10871661 YP_004656643.1 CDS Runsl_3130 NC_015703.1 3658776 3659639 R PFAM: short chain dehydrogenase; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003593:IPR003439:IPR013611; KEGG: sli:Slin_0799 ABC transporter; PFAM: ABC transporter-like; Transport-associated OB, type 2; PRIAM: Polyamine-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; 3-oxoacyl-ACP reductase complement(3658776..3659639) Runella slithyformis DSM 19594 10871662 YP_004656644.1 CDS Runsl_3131 NC_015703.1 3659982 3660956 R PFAM: ABC transporter; TOBE domain; InterPro IPR000834; KEGG: lby:Lbys_0651 peptidase M14 carboxypeptidase A; PFAM: Peptidase M14, carboxypeptidase A; SMART: Peptidase M14, carboxypeptidase A; SPTR: Peptidase M14 carboxypeptidase A; polyamine-transporting ATPase complement(3659982..3660956) Runella slithyformis DSM 19594 10871663 YP_004656645.1 CDS Runsl_3132 NC_015703.1 3661155 3662912 D PFAM: Zinc carboxypeptidase; InterPro IPR000834; KEGG: lby:Lbys_0650 peptidase M14 carboxypeptidase A; PFAM: Peptidase M14, carboxypeptidase A; SMART: Peptidase M14, carboxypeptidase A; SPTR: Peptidase M14 carboxypeptidase A; peptidase M14 carboxypeptidase A 3661155..3662912 Runella slithyformis DSM 19594 10871664 YP_004656646.1 CDS Runsl_3133 NC_015703.1 3662958 3664766 D PFAM: Zinc carboxypeptidase; COGs: COG3653 N-acyl-D-aspartate/D-glutamate deacylase; InterPro IPR006680:IPR012855; KEGG: sli:Slin_6046 D-aminoacylase domain protein; PFAM: D-aminoacylase, C-terminal; Amidohydrolase 1; PRIAM: N-acyl-D-amino-acid deacylase; SPTR: D-aminoacylase domain protein; peptidase M14 carboxypeptidase A 3662958..3664766 Runella slithyformis DSM 19594 10871665 YP_004656647.1 CDS Runsl_3134 NC_015703.1 3664982 3666553 D PFAM: D-aminoacylase, C-terminal region; Amidohydrolase; COGs: COG4585 Signal transduction histidine kinase; InterPro IPR019734:IPR003594:IPR001440:IPR011712; KEGG: lby:Lbys_2994 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; Tetratricopeptide TPR-1; SMART: ATP-binding region, ATPase-like; Tetratricopeptide repeat; SPTR: Histidine kinase; N-acyl-D-amino-acid deacylase 3664982..3666553 Runella slithyformis DSM 19594 10871666 YP_004656648.1 CDS Runsl_3135 NC_015703.1 3666792 3668645 D PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro IPR011637; KEGG: mxa:MXAN_6633 hypothetical protein; PFAM: DoxX; SPTR: membrane protein; signal transduction histidine kinase 3666792..3668645 Runella slithyformis DSM 19594 10871667 YP_004656649.1 CDS Runsl_3136 NC_015703.1 3668635 3669903 R COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: chu:CHU_0605 b-glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: B-glycosyltransferase, glycosyltransferase 2 protein; DoxX family protein complement(3668635..3669903) Runella slithyformis DSM 19594 10871668 YP_004656650.1 CDS Runsl_3137 NC_015703.1 3669955 3670695 D PFAM: Glycosyl transferase 2; COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544:IPR005786; KEGG: dfe:Dfer_3303 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV; PRIAM: Branched-chain-amino-acid transaminase; SPTR: Branched-chain amino acid aminotransferase; TIGRFAM: Branched-chain amino acid aminotransferase II; family 2 glycosyl transferase 3669955..3670695 Runella slithyformis DSM 19594 10871669 YP_004656651.1 CDS Runsl_3138 NC_015703.1 3670909 3671976 R PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group II; branched-chain amino acid aminotransferase complement(3670909..3671976) Runella slithyformis DSM 19594 10871670 YP_004656652.1 CDS Runsl_3139 NC_015703.1 3672083 3672406 D COGs: COG2096 conserved hypothetical protein; InterPro IPR002779:IPR017858; KEGG: dfe:Dfer_3302 ATP/cobalamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type; PRIAM: Cob(I)yrinic acid a,c-diamide adenosyltransferase; SPTR: ATP/cobalamin adenosyltransferase; TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal; hypothetical protein 3672083..3672406 Runella slithyformis DSM 19594 10871671 YP_004656653.1 CDS Runsl_3140 NC_015703.1 3672325 3672879 R PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase; KEGG: sli:Slin_6457 hypothetical protein; SPTR: uncharacterized protein; ATP/cobalamin adenosyltransferase complement(3672325..3672879) Runella slithyformis DSM 19594 10871672 YP_004656654.1 CDS Runsl_3141 NC_015703.1 3673121 3673543 D InterPro IPR008538; KEGG: dfe:Dfer_4308 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; hypothetical protein 3673121..3673543 Runella slithyformis DSM 19594 10871673 YP_004656655.1 CDS Runsl_3142 NC_015703.1 3673509 3674087 R PFAM: Protein of unknown function (DUF820); COGs: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; InterPro IPR000581; KEGG: dfe:Dfer_4563 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; PRIAM: Dihydroxy-acid dehydratase; SPTR: Dihydroxy-acid dehydratase; hypothetical protein complement(3673509..3674087) Runella slithyformis DSM 19594 10871674 YP_004656656.1 CDS Runsl_3143 NC_015703.1 3674206 3675921 D PFAM: Dehydratase; TIGRFAM: dihydroxy-acid dehydratase; COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: sli:Slin_0096 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; PRIAM: Exopolyphosphatase; SPTR: Ppx/GppA phosphatase; dihydroxy-acid dehydratase 3674206..3675921 Runella slithyformis DSM 19594 10871675 YP_004656657.1 CDS Runsl_3144 NC_015703.1 3676004 3676936 R PFAM: Ppx/GppA phosphatase; HAMAP: Ribosomal protein S21; InterPro IPR001911; KEGG: sli:Slin_0097 ribosomal protein S21; PFAM: Ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: Ribosomal protein S21; Ppx/GppA phosphatase complement(3676004..3676936) Runella slithyformis DSM 19594 10871676 YP_004656658.1 CDS Runsl_3145 NC_015703.1 3677065 3677259 D PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; COGs: COG2350 conserved hypothetical protein; InterPro IPR005545; KEGG: sli:Slin_2848 YCII-related protein; PFAM: YCII-related; SPTR: YCII-related protein; 30S ribosomal protein S21 3677065..3677259 Runella slithyformis DSM 19594 10871677 YP_004656659.1 CDS Runsl_3146 NC_015703.1 3677325 3677612 R PFAM: YCII-related domain; COGs: COG0465 ATP-dependent Zn protease; InterProIPR003593:IPR011546:IPR003959:IPR000642:IPR 005936; KEGG: sli:Slin_3001 ATP-dependent metalloprotease FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; PRIAM: Microtubule-severing ATPase; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent zinc metalloprotease FtsH; TIGRFAM: Peptidase M41, FtsH; hypothetical protein complement(3677325..3677612) Runella slithyformis DSM 19594 10871678 YP_004656660.1 CDS Runsl_3147 NC_015703.1 3677745 3679751 R PFAM: Peptidase M41; ATPase associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH; COGs: COG0799 Iojap protein; InterPro IPR004394; KEGG: dfe:Dfer_5041 iojap-like protein; PFAM: Iojap-related protein; SPTR: Iojap-like protein; TIGRFAM: Iojap-related protein; ATP-dependent metalloprotease FtsH complement(3677745..3679751) Runella slithyformis DSM 19594 10871679 YP_004656661.1 CDS Runsl_3148 NC_015703.1 3679947 3680330 R PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-like ribosome-associated protein; COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR004143:IPR003142:IPR004408; KEGG: sli:Slin_3003 biotin/acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Biotin protein ligase, C-terminal; SPTR: Biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; iojap family protein complement(3679947..3680330) Runella slithyformis DSM 19594 10871680 YP_004656662.1 CDS Runsl_3149 NC_015703.1 3680377 3681135 D PFAM: Biotin/lipoate A/B protein ligase; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region; InterPro IPR019850; KEGG: sli:Slin_4895 gliding motility-associated lipoprotein GldD; SPTR: Gliding motility-associated lipoprotein GldD; TIGRFAM: Gliding motility-associated lipoprotein, GldD; biotin--acetyl-CoA-carboxylase ligase 3680377..3681135 Runella slithyformis DSM 19594 10871681 YP_004656663.1 CDS Runsl_3150 NC_015703.1 3681125 3681814 D TIGRFAM: gliding motility-associated lipoprotein GldD; COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537; KEGG: sli:Slin_3485 UbiA prenyltransferase; PFAM: UbiA prenyltransferase; PRIAM: Geranylgeranylglycerol-phosphate geranylgeranyltransferase; SPTR: UbiA prenyltransferase; gliding motility-associated lipoprotein GldD 3681125..3681814 Runella slithyformis DSM 19594 10871682 YP_004656664.1 CDS Runsl_3151 NC_015703.1 3682000 3682905 R PFAM: UbiA prenyltransferase; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dfe:Dfer_2479 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; geranylgeranylglycerol-phosphate geranylgeranyltransferase complement(3682000..3682905) Runella slithyformis DSM 19594 10871683 YP_004656665.1 CDS Runsl_3152 NC_015703.1 3683044 3684204 D PFAM: Glycosyl transferases group 1; TIGRFAM: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA; COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR008334; KEGG: sli:Slin_4341 5'-nucleotidase domain protein; PFAM: 5'-Nucleotidase, C-terminal; SPTR: 5'-Nucleotidase domain protein; group 1 glycosyl transferase 3683044..3684204 Runella slithyformis DSM 19594 10871684 YP_004656666.1 CDS Runsl_3153 NC_015703.1 3684259 3685017 D PFAM: 5'-nucleotidase, C-terminal domain; COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR004843; KEGG: sli:Slin_4342 metallophosphoesterase; PFAM: Metallophosphoesterase; PRIAM: 5'-nucleotidase; SPTR: Metallophosphoesterase; 5'-nucleotidase 3684259..3685017 Runella slithyformis DSM 19594 10871685 YP_004656667.1 CDS Runsl_3154 NC_015703.1 3685027 3685947 D PFAM: Calcineurin-like phosphoesterase; COGs: COG2235 Arginine deiminase; InterPro IPR003198; KEGG: sli:Slin_0192 arginine deiminase; PFAM: Amidinotransferase; PRIAM: Arginine deiminase; SPTR: Arginine deiminase; 5'-nucleotidase 3685027..3685947 Runella slithyformis DSM 19594 10871686 YP_004656668.1 CDS Runsl_3155 NC_015703.1 3686158 3687603 D PFAM: Amidinotransferase; InterPro IPR008538; KEGG: sli:Slin_5071 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; arginine deiminase 3686158..3687603 Runella slithyformis DSM 19594 10871687 YP_004656669.1 CDS Runsl_3156 NC_015703.1 3687665 3688231 D PFAM: Protein of unknown function (DUF820); COGs: COG4874 Uncharacterized protein containing a pentein-type domain; KEGG: sli:Slin_0193 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3687665..3688231 Runella slithyformis DSM 19594 10871688 YP_004656670.1 CDS Runsl_3157 NC_015703.1 3688253 3689194 D COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterPro IPR011127:IPR011095; KEGG: dfe:Dfer_4937 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase, N-terminal; D-alanine--D-alanine ligase, C-terminal; PRIAM: D-alanine--D-alanine ligase; SPTR: D-alanine--D-alanine ligase; hypothetical protein 3688253..3689194 Runella slithyformis DSM 19594 10871689 YP_004656671.1 CDS Runsl_3158 NC_015703.1 3689513 3691183 R PFAM: D-ala D-ala ligase N-terminus; D-ala D-ala ligase C-terminus; TIGRFAM: D-alanine--D-alanine ligase; COGs: COG2367 Beta-lactamase class A; InterPro IPR001466; KEGG: ssm:Spirs_2202 beta-lactamase; PFAM: Beta-lactamase-related; PRIAM: Beta-lactamase; SPTR: Beta-lactamase; D-alanine--D-alanine ligase complement(3689513..3691183) Runella slithyformis DSM 19594 10871690 YP_004656672.1 CDS Runsl_3159 NC_015703.1 3691257 3692168 R PFAM: Beta-lactamase; KEGG: dfe:Dfer_4669 hypothetical protein; SPTR: uncharacterized protein; beta-lactamase complement(3691257..3692168) Runella slithyformis DSM 19594 10871691 YP_004656673.1 CDS Runsl_3160 NC_015703.1 3692399 3693019 R COGs: COG0504 CTP synthase (UTP-ammonia lyase); HAMAP: CTP synthase; InterPro IPR004468:IPR017456:IPR000991; KEGG: dfe:Dfer_1151 CTP synthetase; PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; PRIAM: CTP synthase; SPTR: CTP synthase; TIGRFAM: CTP synthase; hypothetical protein complement(3692399..3693019) Runella slithyformis DSM 19594 10871692 YP_004656674.1 CDS Runsl_3161 NC_015703.1 3693227 3694912 D PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase; COGs: COG0117 Pyrimidine deaminase; InterPro IPR002125:IPR002734:IPR004794; KEGG: sli:Slin_2937 riboflavin biosynthesis protein RibD; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding; PRIAM: Diaminohydroxyphosphoribosylaminopyrimidine deaminase., 5-amino-6-(5-phosphoribosylamino)uracil reductase; SPTR: Riboflavin biosynthesis protein RibD; TIGRFAM: Riboflavin biosynthesis protein RibD; CTP synthase 3693227..3694912 Runella slithyformis DSM 19594 10871693 YP_004656675.1 CDS Runsl_3162 NC_015703.1 3695085 3696143 R PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD; COGs: COG0287 Prephenate dehydrogenase; InterPro IPR003099; KEGG: sli:Slin_6542 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; PRIAM: Prephenate dehydrogenase; SPTR: Prephenate dehydrogenase; riboflavin biosynthesis protein RibD complement(3695085..3696143) Runella slithyformis DSM 19594 10871694 YP_004656676.1 CDS Runsl_3163 NC_015703.1 3696269 3697126 D PFAM: Prephenate dehydrogenase; COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022; KEGG: dfe:Dfer_2974 carboxyl transferase; PFAM: Carboxyl transferase; PRIAM: Propionyl-CoA carboxylase; SPTR: Propionyl-CoA carboxylase beta chain; prephenate dehydrogenase 3696269..3697126 Runella slithyformis DSM 19594 10871695 YP_004656677.1 CDS Runsl_3164 NC_015703.1 3697247 3698800 D PFAM: Carboxyl transferase domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: msi:Msm_0775 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; propionyl-CoA carboxylase 3697247..3698800 Runella slithyformis DSM 19594 10871696 YP_004656678.1 CDS Runsl_3165 NC_015703.1 3698852 3699430 R COGs: COG3485 Protocatechuate 3 4-dioxygenase beta subunit; InterPro IPR000627; KEGG: rbi:RB2501_01006 hypothetical protein; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; SPTR: uncharacterized protein; AraC family transcriptional regulator complement(3698852..3699430) Runella slithyformis DSM 19594 10871697 YP_004656679.1 CDS Runsl_3166 NC_015703.1 3700750 3701367 D PFAM: Dioxygenase; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR008274:IPR006311; KEGG: dfe:Dfer_0732 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; PRIAM: Aldehyde dehydrogenase (pyrroloquinoline-quinone); SPTR: Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; intradiol ring-cleavage dioxygenase 3700750..3701367 Runella slithyformis DSM 19594 10871698 YP_004656680.1 CDS Runsl_3167 NC_015703.1 3701518 3703764 R PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; InterPro IPR001041:IPR002888; KEGG: sli:Slin_6243 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; Ferredoxin; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: (2Fe-2S)-binding domain protein; aldehyde dehydrogenase complement(3701518..3703764) Runella slithyformis DSM 19594 10871699 YP_004656681.1 CDS Runsl_3168 NC_015703.1 3703803 3704258 R PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: osp:Odosp_1109 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator; isoquinoline 1-oxidoreductase complement(3703803..3704258) Runella slithyformis DSM 19594 10871700 YP_004656682.1 CDS Runsl_3169 NC_015703.1 3704366 3705268 R PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG0656 Aldo/keto reductase related to diketogulonate reductase; InterPro IPR001395; KEGG: rca:Rcas_1051 2,5-didehydrogluconate reductase; PFAM: Aldo/keto reductase; PRIAM: Methylglyoxal reductase (NADPH-dependent); SPTR: aldo/keto reductase; AraC family transcriptional regulator complement(3704366..3705268) Runella slithyformis DSM 19594 10871701 YP_004656683.1 CDS Runsl_3170 NC_015703.1 3705423 3706265 D PFAM: Aldo/keto reductase; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR008274:IPR006311; KEGG: rbi:RB2501_01021 isoquinoline 1-oxidoreductase subunit beta; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: Isoquinoline 1-oxidoreductase, beta subunit; methylglyoxal reductase 3705423..3706265 Runella slithyformis DSM 19594 10871702 YP_004656684.1 CDS Runsl_3171 NC_015703.1 3706495 3708744 D PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; COGs: COG1280 threonine efflux protein; InterPro IPR001123; KEGG: tin:Tint_2220 lysine exporter protein (LysE/YggA); PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: Lysine exporter protein (LYSE/YGGA); isoquinoline 1-oxidoreductase 3706495..3708744 Runella slithyformis DSM 19594 10871703 YP_004656685.1 CDS Runsl_3172 NC_015703.1 3708771 3709400 D PFAM: LysE type translocator; KEGG: sli:Slin_2427 hypothetical protein; SPTR: uncharacterized protein; lysine exporter protein LysE/YggA 3708771..3709400 Runella slithyformis DSM 19594 10871704 YP_004656686.1 CDS Runsl_3173 NC_015703.1 3709510 3710064 R COGs: COG1804 acyl-CoA transferase/carnitine dehydratase; InterPro IPR003673; KEGG: sru:SRU_2333 L-carnitine dehydratase; PFAM: CoA-transferase III; SPTR: Acyl CoA transferase/carnitine dehydratase; hypothetical protein complement(3709510..3710064) Runella slithyformis DSM 19594 10871705 YP_004656687.1 CDS Runsl_3174 NC_015703.1 3710168 3711271 D PFAM: CoA-transferase III; Prodigal; manually curated; L-carnitine dehydratase/bile acid-inducible protein F 3710168..3711271 Runella slithyformis DSM 19594 10871706 YP_004656688.1 CDS Runsl_3177 NC_015703.1 3714384 3714608 R hypothetical protein complement(3714384..3714608) Runella slithyformis DSM 19594 10871709 YP_004656689.1 CDS Runsl_3178 NC_015703.1 3714632 3714841 R KEGG: shg:Sph21_1894 hypothetical protein; SPTR: DNA-binding protein; hypothetical protein complement(3714632..3714841) Runella slithyformis DSM 19594 10871710 YP_004656690.1 CDS Runsl_3179 NC_015703.1 3714879 3715265 R PFAM: HTH domain; hypothetical protein complement(3714879..3715265) Runella slithyformis DSM 19594 10871711 YP_004656691.1 CDS Runsl_3180 NC_015703.1 3715429 3715608 D COGs: COG0237 Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase; InterPro IPR001977; KEGG: sli:Slin_6325 dephospho-CoA kinase; PRIAM: Dephospho-CoA kinase; SPTR: Dephospho-CoA kinase; TIGRFAM: Dephospho-CoA kinase; hypothetical protein 3715429..3715608 Runella slithyformis DSM 19594 10871712 YP_004656692.1 CDS Runsl_3181 NC_015703.1 3715598 3716185 R PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; KEGG: sli:Slin_6326 hypothetical protein; SPTR: uncharacterized protein; manually curated; dephospho-CoA kinase complement(3715598..3716185) Runella slithyformis DSM 19594 10871713 YP_004656693.1 CDS Runsl_3182 NC_015703.1 3716269 3717042 R COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: sli:Slin_6327 preprotein translocase, YajC subunit; PFAM: YajC; SPTR: Preprotein translocase, YajC subunit; TIGRFAM: YajC; hypothetical protein complement(3716269..3717042) Runella slithyformis DSM 19594 10871714 YP_004656694.1 CDS Runsl_3183 NC_015703.1 3717128 3717439 R PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit; InterPro IPR011467; KEGG: sli:Slin_6328 hypothetical protein; PFAM: Protein of unknown function DUF1573; SPTR: uncharacterized protein; preprotein translocase subunit YajC complement(3717128..3717439) Runella slithyformis DSM 19594 10871715 YP_004656695.1 CDS Runsl_3184 NC_015703.1 3717479 3717919 R PFAM: Protein of unknown function (DUF1573); KEGG: dfe:Dfer_4925 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3717479..3717919) Runella slithyformis DSM 19594 10871716 YP_004656696.1 CDS Runsl_3185 NC_015703.1 3717932 3718234 R COGs: COG0781 Transcription termination factor; HAMAP: N utilization substance protein B-like protein; InterPro IPR006027:IPR011605; KEGG: dfe:Dfer_4924 NusB antitermination factor; PFAM: NusB/RsmB/TIM44; SPTR: NusB antitermination factor; TIGRFAM: NusB antitermination factor; hypothetical protein complement(3717932..3718234) Runella slithyformis DSM 19594 10871717 YP_004656697.1 CDS Runsl_3186 NC_015703.1 3718298 3719470 R PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB; COGs: COG0468 RecA/RadA recombinase; HAMAP: DNA recombination and repair protein RecA; InterPro IPR003593:IPR013765; KEGG: dfe:Dfer_0005 RecA protein; PFAM: DNA recombination and repair protein RecA; SMART: ATPase, AAA+ type, core; SPTR: Protein RecA; TIGRFAM: DNA recombination and repair protein RecA; NusB antitermination factor complement(3718298..3719470) Runella slithyformis DSM 19594 10871718 YP_004656698.1 CDS Runsl_3187 NC_015703.1 3719801 3720859 D PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA; COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: sli:Slin_3527 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase domain protein; recombinase A 3719801..3720859 Runella slithyformis DSM 19594 10871719 YP_004656699.1 CDS Runsl_3188 NC_015703.1 3721313 3722452 R PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR001732:IPR014026:IPR014027:IPR017476; KEGG: dfe:Dfer_3001 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: Nucleotide sugar dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase; butyryl-CoA dehydrogenase complement(3721313..3722452) Runella slithyformis DSM 19594 10871720 YP_004656700.1 CDS Runsl_3189 NC_015703.1 3722852 3724168 D PFAM: UDP-glucose/GDP-mannose dehydrogenase, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase, central domain; UDP-glucose/GDP-mannose dehydrogenase, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_3000 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucuronate decarboxylase; SPTR: NAD-dependent epimerase/dehydratase; nucleotide sugar dehydrogenase 3722852..3724168 Runella slithyformis DSM 19594 10871721 YP_004656701.1 CDS Runsl_3190 NC_015703.1 3724175 3725146 D PFAM: NAD dependent epimerase/dehydratase; COGs: COG1555 DNA uptake protein and related DNA-binding protein; KEGG: sli:Slin_1689 DNA uptake protein and related DNA-binding protein-like protein; SPTR: DNA uptake protein and related DNA-binding protein-like protein; UDP-glucuronate decarboxylase 3724175..3725146 Runella slithyformis DSM 19594 10871722 YP_004656702.1 CDS Runsl_3191 NC_015703.1 3725234 3726211 R TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region; COGs: COG0423 Glycyl-tRNA synthetase (class II); InterPro IPR002314:IPR004154:IPR002315; KEGG: dfe:Dfer_4906 glycyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Anticodon-binding; SPTR: Glycyl-tRNA synthetase; TIGRFAM: Glycyl-tRNA synthetase, alpha2 dimer; DNA uptake protein-like protein complement(3725234..3726211) Runella slithyformis DSM 19594 10871723 YP_004656703.1 CDS Runsl_3192 NC_015703.1 3726332 3727831 D PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: glycyl-tRNA synthetase, dimeric type; KEGG: sli:Slin_6509 hypothetical protein; SPTR: uncharacterized protein; glycyl-tRNA synthetase 3726332..3727831 Runella slithyformis DSM 19594 10871724 YP_004656704.1 CDS Runsl_3193 NC_015703.1 3727950 3728672 R COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: sli:Slin_6512 PadR family transcriptional regulator; PFAM: Transcriptional regulator PadR N-terminal-like; SPTR: Transcriptional regulator, PadR-like family; hypothetical protein complement(3727950..3728672) Runella slithyformis DSM 19594 10871725 YP_004656705.1 CDS Runsl_3194 NC_015703.1 3728669 3729022 R PFAM: Transcriptional regulator PadR-like family; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: dfe:Dfer_4778 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; PadR-like family transcriptional regulator complement(3728669..3729022) Runella slithyformis DSM 19594 10871726 YP_004656706.1 CDS Runsl_3195 NC_015703.1 3729101 3729733 D PFAM: Protein of unknown function (DUF820); COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: sli:Slin_1620 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; hypothetical protein 3729101..3729733 Runella slithyformis DSM 19594 10871727 YP_004656707.1 CDS Runsl_3196 NC_015703.1 3729830 3730984 D PFAM: Major Facilitator Superfamily; InterPro IPR003544; KEGG: sli:Slin_1448 cytochrome c biogenesis protein CcmB; PFAM: Cytochrome c-type biogenesis protein CcmB; SPTR: Cytochrome c-type biogenesis protein CcmB; major facilitator superfamily protein 3729830..3730984 Runella slithyformis DSM 19594 10871728 YP_004656708.1 CDS Runsl_3197 NC_015703.1 3731092 3731754 D PFAM: CcmB protein; InterPro IPR002541; KEGG: sli:Slin_1447 cytochrome c assembly protein; PFAM: Cytochrome c assembly protein; SPTR: Cytochrome c assembly protein; cytochrome c-type biogenesis protein CcmB 3731092..3731754 Runella slithyformis DSM 19594 10871729 YP_004656709.1 CDS Runsl_3198 NC_015703.1 3731840 3732499 D PFAM: Cytochrome C assembly protein; KEGG: sli:Slin_1446 hypothetical protein; SPTR: uncharacterized protein; cytochrome c assembly protein 3731840..3732499 Runella slithyformis DSM 19594 10871730 YP_004656710.1 CDS Runsl_3199 NC_015703.1 3732523 3732747 D KEGG: ana:asr0148 hypothetical protein; SPTR: Asr0148 protein; hypothetical protein 3732523..3732747 Runella slithyformis DSM 19594 10871731 YP_004656711.1 CDS Runsl_3200 NC_015703.1 3732744 3732953 D PFAM: Protein of unknown function (DUF2281); COGs: COG3744 conserved hypothetical protein; InterPro IPR002716; KEGG: cch:Cag_0280 hypothetical protein; PFAM: PilT protein, N-terminal; SPTR: uncharacterized protein; hypothetical protein 3732744..3732953 Runella slithyformis DSM 19594 10871732 YP_004656712.1 CDS Runsl_3201 NC_015703.1 3732950 3733333 D PFAM: PIN domain; KEGG: dfe:Dfer_5081 hypothetical protein; SPTR: uncharacterized protein; twitching motility protein PilT 3732950..3733333 Runella slithyformis DSM 19594 10871733 YP_004656713.1 CDS Runsl_3202 NC_015703.1 3733327 3733788 D PFAM: CcmE; COGs: COG1138 Cytochrome c biogenesis factor; InterPro IPR002541; KEGG: dfe:Dfer_5080 cytochrome c assembly protein; PFAM: Cytochrome c assembly protein; SPTR: Cytochrome c assembly protein; manually curated; hypothetical protein 3733327..3733788 Runella slithyformis DSM 19594 10871734 YP_004656714.1 CDS Runsl_3203 NC_015703.1 3733855 3736413 D PFAM: Cytochrome C assembly protein; TIGRFAM: c-type cytochrome biogenesis protein CcmF; KEGG: sli:Slin_0299 hypothetical protein; SPTR: uncharacterized protein; cytochrome c assembly protein 3733855..3736413 Runella slithyformis DSM 19594 10871735 YP_004656715.1 CDS Runsl_3204 NC_015703.1 3736531 3737127 D KEGG: dfe:Dfer_3944 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3736531..3737127 Runella slithyformis DSM 19594 10871736 YP_004656716.1 CDS Runsl_3205 NC_015703.1 3737220 3737657 R COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006140; KEGG: sli:Slin_2228 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; SPTR: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; hypothetical protein complement(3737220..3737657) Runella slithyformis DSM 19594 10871737 YP_004656717.1 CDS Runsl_3206 NC_015703.1 3737678 3738613 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein complement(3737678..3738613) Runella slithyformis DSM 19594 10871738 YP_004656718.1 CDS Runsl_3207 NC_015703.1 3738719 3738844 D KEGG: sli:Slin_4490 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3738719..3738844 Runella slithyformis DSM 19594 10871739 YP_004656719.1 CDS Runsl_3208 NC_015703.1 3738956 3741418 R COGs: COG4731 conserved hypothetical protein; InterPro IPR019223; KEGG: psn:Pedsa_0847 protein of unknown function DUF2147; PFAM: Protein of unknown function DUF2147; SPTR: uncharacterized protein; hypothetical protein complement(3738956..3741418) Runella slithyformis DSM 19594 10871740 YP_004656720.1 CDS Runsl_3209 NC_015703.1 3741678 3742136 D PFAM: Uncharacterized protein conserved in bacteria (DUF2147); KEGG: dfe:Dfer_0343 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3741678..3742136 Runella slithyformis DSM 19594 10871741 YP_004656721.1 CDS Runsl_3210 NC_015703.1 3742185 3743192 R KEGG: sli:Slin_3991 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3742185..3743192) Runella slithyformis DSM 19594 10871742 YP_004656722.1 CDS Runsl_3211 NC_015703.1 3743801 3744433 R KEGG: sli:Slin_3992 hypothetical protein; SPTR: uncharacterized protein; manually curated; hypothetical protein complement(3743801..3744433) Runella slithyformis DSM 19594 10871743 YP_004656723.1 CDS Runsl_3212 NC_015703.1 3744447 3746036 R InterPro IPR012910:IPR000531; KEGG: sli:Slin_3993 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein complement(3744447..3746036) Runella slithyformis DSM 19594 10871744 YP_004656724.1 CDS Runsl_3213 NC_015703.1 3746057 3749260 R PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; Prodigal; manually curated; TonB-dependent receptor plug complement(3746057..3749260) Runella slithyformis DSM 19594 10871745 YP_004656725.1 CDS Runsl_3216 NC_015703.1 3750445 3751338 R PFAM: NAD dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(3750445..3751338) Runella slithyformis DSM 19594 10871748 YP_004656726.1 CDS Runsl_3217 NC_015703.1 3751340 3751528 R COGs: COG5654 conserved hypothetical protein; InterPro IPR014914; KEGG: cts:Ctha_2678 RES domain-containing protein; PFAM: RES; SPTR: uncharacterized protein; hypothetical protein complement(3751340..3751528) Runella slithyformis DSM 19594 10871749 YP_004656727.1 CDS Runsl_3218 NC_015703.1 3751576 3752049 R PFAM: RES domain; COGs: COG5642 conserved hypothetical protein; InterPro IPR011979; KEGG: zpr:ZPR_0343 hypothetical protein; PFAM: Conserved hypothetical protein CHP02293; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02293; RES domain-containing protein complement(3751576..3752049) Runella slithyformis DSM 19594 10871750 YP_004656728.1 CDS Runsl_3219 NC_015703.1 3752049 3752549 R PFAM: Protein of unknown function (DUF2384); TIGRFAM: toxin-antitoxin system antitoxin component, TIGR02293 family; InterPro IPR003409; KEGG: ptm:GSPATT00011040001 hypothetical protein; PFAM: MORN motif; SPTR: Chromosome undetermined scaffold_29, whole genome shotgun sequence; hypothetical protein complement(3752049..3752549) Runella slithyformis DSM 19594 10871751 YP_004656729.1 CDS Runsl_3220 NC_015703.1 3753139 3754320 R COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: mev:Metev_2271 APHP domain-containing protein; SPTR: WD40-like Beta Propeller; MORN repeat-containing protein complement(3753139..3754320) Runella slithyformis DSM 19594 10871752 YP_004656730.1 CDS Runsl_3221 NC_015703.1 3754384 3755334 R PFAM: WD40-like Beta Propeller Repeat; InterPro IPR001846; KEGG: sur:STAUR_4950 hypothetical protein; PFAM: von Willebrand factor, type D; SPTR: Genome sequencing data, contig C314; hypothetical protein complement(3754384..3755334) Runella slithyformis DSM 19594 10871753 YP_004656731.1 CDS Runsl_3222 NC_015703.1 3755403 3757682 R PFAM: von Willebrand factor type D domain; von Willebrand factor A complement(3755403..3757682) Runella slithyformis DSM 19594 10871754 YP_004656732.1 CDS Runsl_3223 NC_015703.1 3757712 3758905 R COGs: COG3920 Signal transduction histidine kinase; InterPro IPR011495:IPR003594; KEGG: dfe:Dfer_1629 signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor region; ATP-binding region, ATPase-like; SPTR: Signal transduction histidine kinase; hypothetical protein complement(3757712..3758905) Runella slithyformis DSM 19594 10871755 YP_004656733.1 CDS Runsl_3224 NC_015703.1 3759132 3760859 D PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_1630 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; signal transduction histidine kinase 3759132..3760859 Runella slithyformis DSM 19594 10871756 YP_004656734.1 CDS Runsl_3225 NC_015703.1 3760869 3761663 D PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG4354 bile acid beta-glucosidase; InterPro IPR006775; KEGG: sli:Slin_6449 hypothetical protein; SPTR: uncharacterized protein; LytTR family two component transcriptional regulator 3760869..3761663 Runella slithyformis DSM 19594 10871757 YP_004656735.1 CDS Runsl_3226 NC_015703.1 3761843 3764410 R PFAM: beta-Glucocerebrosidase 2 N terminal; Protein of unknown function, DUF608; COGs: COG0388 amidohydrolase; InterPro IPR000182:IPR003010; KEGG: cts:Ctha_0190 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; GCN5-related N-acetyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; hypothetical protein complement(3761843..3764410) Runella slithyformis DSM 19594 10871758 YP_004656736.1 CDS Runsl_3227 NC_015703.1 3764638 3766197 R PFAM: Acetyltransferase (GNAT) family; Carbon-nitrogen hydrolase; KEGG: dfe:Dfer_4533 hypothetical protein; SPTR: uncharacterized protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(3764638..3766197) Runella slithyformis DSM 19594 10871759 YP_004656737.1 CDS Runsl_3228 NC_015703.1 3766516 3767814 R KEGG: mtt:Ftrac_2027 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3766516..3767814) Runella slithyformis DSM 19594 10871760 YP_004656738.1 CDS Runsl_3229 NC_015703.1 3767830 3769074 R KEGG: rbi:RB2501_03795 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3767830..3769074) Runella slithyformis DSM 19594 10871761 YP_004656739.1 CDS Runsl_3230 NC_015703.1 3769087 3770160 R COGs: COG3590 metalloendopeptidase; InterPro IPR008753:IPR018497; KEGG: sli:Slin_1065 endothelin-converting enzyme 1; PFAM: Peptidase M13; Peptidase M13, neprilysin, C-terminal; PRIAM: Endothelin-converting enzyme 1; SPTR: Endothelin-converting enzyme 1; hypothetical protein complement(3769087..3770160) Runella slithyformis DSM 19594 10871762 YP_004656740.1 CDS Runsl_3231 NC_015703.1 3770377 3772410 D PFAM: Peptidase M13; KEGG: sli:Slin_1514 hypothetical protein; SPTR: uncharacterized protein; endothelin-converting enzyme 1 3770377..3772410 Runella slithyformis DSM 19594 10871763 YP_004656741.1 CDS Runsl_3232 NC_015703.1 3772435 3773484 D KEGG: dfe:Dfer_3041 secreted protein; SPTR: secreted protein; hypothetical protein 3772435..3773484 Runella slithyformis DSM 19594 10871764 YP_004656742.1 CDS Runsl_3233 NC_015703.1 3773715 3775040 D PFAM: Glycosyl hydrolases family 2, TIM barrel domain; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: cpi:Cpin_3128 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; hypothetical protein 3773715..3775040 Runella slithyformis DSM 19594 10871765 YP_004656743.1 CDS Runsl_3234 NC_015703.1 3775037 3778777 D PFAM: Glycosyl transferase 2; Glycosyl hydrolase 26; KEGG: ilo:IL0647 hypothetical protein; SPTR: uncharacterized protein; family 2 glycosyl transferase 3775037..3778777 Runella slithyformis DSM 19594 10871766 YP_004656744.1 CDS Runsl_3235 NC_015703.1 3778957 3779319 R hypothetical protein complement(3778957..3779319) Runella slithyformis DSM 19594 10871767 YP_004656745.1 CDS Runsl_3236 NC_015703.1 3779279 3779392 R COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: cao:Celal_2798 transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase; hypothetical protein complement(3779279..3779392) Runella slithyformis DSM 19594 10871768 YP_004656746.1 CDS Runsl_3237 NC_015703.1 3779452 3780435 R PFAM: Transposase; KEGG: dfe:Dfer_4027 hypothetical protein; SPTR: uncharacterized protein; transposase IS204/IS1001/IS1096/IS1165 family protein complement(3779452..3780435) Runella slithyformis DSM 19594 10871769 YP_004656747.1 CDS Runsl_3238 NC_015703.1 3780416 3780778 R hypothetical protein complement(3780416..3780778) Runella slithyformis DSM 19594 10871770 YP_004656748.1 CDS Runsl_3239 NC_015703.1 3780988 3781272 D Prodigal; manually curated; hypothetical protein 3780988..3781272 Runella slithyformis DSM 19594 10871771 YP_004656749.1 CDS Runsl_3241 NC_015703.1 3782820 3784472 D TIGRFAM: alpha-glucan phosphorylases; InterPro IPR000182; KEGG: lby:Lbys_1327 diamine N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase (GNAT) family protein; alpha-glucan phosphorylase 3782820..3784472 Runella slithyformis DSM 19594 10871774 YP_004656750.1 CDS Runsl_3242 NC_015703.1 3784542 3784982 R PFAM: Acetyltransferase (GNAT) family; COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: cpi:Cpin_1321 glycosyl transferase 39; PFAM: Glycosyl transferase, family 39; SPTR: Dolichyl-phosphate-mannose-protein mannosyltransferase; N-acetyltransferase GCN5 complement(3784542..3784982) Runella slithyformis DSM 19594 10871775 YP_004656751.1 CDS Runsl_3243 NC_015703.1 3785222 3787087 R InterPro IPR000326; KEGG: sli:Slin_5970 phosphoesterase PA-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: Phosphoesterase PA-phosphatase related protein; glycosyl transferase family protein complement(3785222..3787087) Runella slithyformis DSM 19594 10871776 YP_004656752.1 CDS Runsl_3244 NC_015703.1 3787140 3787769 R PFAM: PAP2 superfamily; KEGG: sli:Slin_4010 hypothetical protein; SPTR: uncharacterized protein; phosphoesterase PA-phosphatase-like protein complement(3787140..3787769) Runella slithyformis DSM 19594 10871777 YP_004656753.1 CDS Runsl_3245 NC_015703.1 3787820 3788674 D InterPro IPR005651; KEGG: mtt:Ftrac_2331 hypothetical protein; PFAM: Protein of unknown function DUF343; SPTR: uncharacterized protein; hypothetical protein 3787820..3788674 Runella slithyformis DSM 19594 10871778 YP_004656754.1 CDS Runsl_3246 NC_015703.1 3788692 3788952 R PFAM: Trm112p-like protein; COGs: COG0352 Thiamine monophosphate synthase; InterPro IPR003733; KEGG: ran:Riean_0486 thiamine monophosphate synthase; PFAM: Thiamine monophosphate synthase; SPTR: Thiamine monophosphate synthase; hypothetical protein complement(3788692..3788952) Runella slithyformis DSM 19594 10871779 YP_004656755.1 CDS Runsl_3247 NC_015703.1 3788949 3789590 R PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase; COGs: COG0309 Hydrogenase maturation factor; InterPro IPR000728:IPR010918; KEGG: ran:Riean_0487 air synthase related protein domain protein; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; SPTR: AIR synthase domain protein; thiamine monophosphate synthase complement(3788949..3789590) Runella slithyformis DSM 19594 10871780 YP_004656756.1 CDS Runsl_3248 NC_015703.1 3789587 3790645 R PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: mtt:Ftrac_2328 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: SAM-dependent methyltransferase; AIR synthase-like protein domain-containing protein complement(3789587..3790645) Runella slithyformis DSM 19594 10871781 YP_004656757.1 CDS Runsl_3249 NC_015703.1 3790701 3791399 R PFAM: Methyltransferase domain; COGs: COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor; KEGG: sli:Slin_6617 oxidoreductase; SPTR: Oxidoreductase; type 11 methyltransferase complement(3790701..3791399) Runella slithyformis DSM 19594 10871782 YP_004656758.1 CDS Runsl_3250 NC_015703.1 3791578 3792603 R PFAM: BNR/Asp-box repeat; COGs: COG0793 Periplasmic protease; InterPro IPR005151; KEGG: sli:Slin_1888 peptidase S41; PFAM: Peptidase S41; SMART: Peptidase S41; SPTR: Peptidase S41; oxidoreductase complement(3791578..3792603) Runella slithyformis DSM 19594 10871783 YP_004656759.1 CDS Runsl_3251 NC_015703.1 3792722 3794128 D PFAM: Peptidase S41; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_3760 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; peptidase S41 3792722..3794128 Runella slithyformis DSM 19594 10871784 YP_004656760.1 CDS Runsl_3252 NC_015703.1 3794207 3794932 R PFAM: ABC transporter; phosphonate-transporting ATPase complement(3794207..3794932) Runella slithyformis DSM 19594 10871785 YP_004656761.1 CDS Runsl_3253 NC_015703.1 3794994 3795503 R KEGG: bco:Bcell_1176 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(3794994..3795503) Runella slithyformis DSM 19594 10871786 YP_004656762.1 CDS Runsl_3254 NC_015703.1 3795505 3796593 R KEGG: dfe:Dfer_3762 tetratricopeptide domain protein; SPTR: Tetratricopeptide domain protein; hypothetical protein complement(3795505..3796593) Runella slithyformis DSM 19594 10871787 YP_004656763.1 CDS Runsl_3255 NC_015703.1 3796663 3799266 R hypothetical protein complement(3796663..3799266) Runella slithyformis DSM 19594 10871788 YP_004656764.1 CDS Runsl_3256 NC_015703.1 3799302 3799478 D COGs: COG1538 Outer membrane protein; KEGG: cpi:Cpin_7078 outer membrane protein; SPTR: Outer membrane efflux protein; hypothetical protein 3799302..3799478 Runella slithyformis DSM 19594 10871789 YP_004656765.1 CDS Runsl_3257 NC_015703.1 3799403 3800980 R PFAM: Outer membrane efflux protein; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: sli:Slin_4444 cation/multidrug efflux pump-like protein; PFAM: Acriflavin resistance protein; SPTR: Cation/multidrug efflux pump-like protein; hypothetical protein complement(3799403..3800980) Runella slithyformis DSM 19594 10871790 YP_004656766.1 CDS Runsl_3258 NC_015703.1 3801168 3804485 R PFAM: AcrB/AcrD/AcrF family; Prodigal; manually curated; acriflavin resistance protein complement(3801168..3804485) Runella slithyformis DSM 19594 10871791 YP_004656767.1 CDS Runsl_3260 NC_015703.1 3805702 3806868 D hypothetical protein 3805702..3806868 Runella slithyformis DSM 19594 10871793 YP_004656768.1 CDS Runsl_3261 NC_015703.1 3806819 3807271 D InterPro IPR007367; KEGG: dfe:Dfer_5692 protein of unknown function DUF433; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein; hypothetical protein 3806819..3807271 Runella slithyformis DSM 19594 10871794 YP_004656769.1 CDS Runsl_3262 NC_015703.1 3807372 3807614 R PFAM: Protein of unknown function (DUF433); COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sli:Slin_4438 efflux transporter RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; hypothetical protein complement(3807372..3807614) Runella slithyformis DSM 19594 10871795 YP_004656770.1 CDS Runsl_3263 NC_015703.1 3807786 3808859 D PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792; KEGG: lby:Lbys_1269 two component transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: Two component transcriptional regulator, LuxR family protein; RND family efflux transporter MFP subunit 3807786..3808859 Runella slithyformis DSM 19594 10871796 YP_004656771.1 CDS Runsl_3264 NC_015703.1 3808867 3809517 D PFAM: Bacterial regulatory proteins, luxR family; LuxR family transcriptional regulator 3808867..3809517 Runella slithyformis DSM 19594 10871797 YP_004656772.1 CDS Runsl_3265 NC_015703.1 3809749 3809871 D hypothetical protein 3809749..3809871 Runella slithyformis DSM 19594 10871798 YP_004656773.1 CDS Runsl_3266 NC_015703.1 3810036 3811073 D hypothetical protein 3810036..3811073 Runella slithyformis DSM 19594 10871799 YP_004656774.1 CDS Runsl_3267 NC_015703.1 3811090 3811500 D hypothetical protein 3811090..3811500 Runella slithyformis DSM 19594 10871800 YP_004656775.1 CDS Runsl_3268 NC_015703.1 3811451 3811927 D hypothetical protein 3811451..3811927 Runella slithyformis DSM 19594 10871801 YP_004656776.1 CDS Runsl_3269 NC_015703.1 3811958 3812215 R hypothetical protein complement(3811958..3812215) Runella slithyformis DSM 19594 10871802 YP_004656777.1 CDS Runsl_3270 NC_015703.1 3812243 3813214 D hypothetical protein 3812243..3813214 Runella slithyformis DSM 19594 10871803 YP_004656778.1 CDS Runsl_3271 NC_015703.1 3813162 3813860 D KEGG: ppn:Palpr_1115 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3813162..3813860 Runella slithyformis DSM 19594 10871804 YP_004656779.1 CDS Runsl_3272 NC_015703.1 3813906 3814787 D COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: sli:Slin_4437 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; hypothetical protein 3813906..3814787 Runella slithyformis DSM 19594 10871805 YP_004656780.1 CDS Runsl_3273 NC_015703.1 3814890 3818033 D PFAM: AcrB/AcrD/AcrF family; InterPro IPR007452; KEGG: dfe:Dfer_3011 hypothetical protein; PFAM: Protein of unknown function DUF490; SPTR: uncharacterized protein; acriflavin resistance protein 3814890..3818033 Runella slithyformis DSM 19594 10871806 YP_004656781.1 CDS Runsl_3274 NC_015703.1 3818419 3823008 R PFAM: Family of unknown function (DUF490); COGs: COG0533 Metal-dependent protease with possible chaperone activity; HAMAP: O-sialoglycoprotein endopeptidase; InterPro IPR000905:IPR017861; KEGG: dfe:Dfer_3012 metalloendopeptidase, glycoprotease; PFAM: Peptidase M22, glycoprotease; PRIAM: O-sialoglycoprotein endopeptidase; SPTR: Probable O-sialoglycoprotein endopeptidase; TIGRFAM: glycoprotease GCP; Peptidase M22, glycoprotease, subgroup; hypothetical protein complement(3818419..3823008) Runella slithyformis DSM 19594 10871807 YP_004656782.1 CDS Runsl_3275 NC_015703.1 3823104 3824105 D PFAM: Glycoprotease; TIGRFAM: glycoprotease GCP; metallohydrolase, glycoprotease/Kae1 family; universal bacterial protein YeaZ; O-sialoglycoprotein endopeptidase 3823104..3824105 Runella slithyformis DSM 19594 10871808 YP_004656783.1 CDS Runsl_3276 NC_015703.1 3824772 3825038 D COGs: COG0642 Signal transduction histidine kinase; InterProIPR003018:IPR000014:IPR001610:IPR003661:IPR 003594:IPR001789:IPR013655:IPR013767:IPR013656; KEGG: sli:Slin_0621 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; PAS fold-3; PAS fold; PAS fold-4; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; GAF; PAC motif; Signal transduction response regulator, receiver region; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; hypothetical protein 3824772..3825038 Runella slithyformis DSM 19594 10871809 YP_004656784.1 CDS Runsl_3277 NC_015703.1 3825824 3830197 D PFAM: GAF domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: dfe:Dfer_3162 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; multi-sensor hybrid histidine kinase 3825824..3830197 Runella slithyformis DSM 19594 10871810 YP_004656785.1 CDS Runsl_3278 NC_015703.1 3830235 3831602 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG3386 Gluconolactonase; InterPro IPR013658; KEGG: sli:Slin_0076 SMP-30/gluconolaconase/LRE domain protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; SPTR: SMP-30/Gluconolaconase/LRE domain protein; oxidoreductase domain-containing protein complement(3830235..3831602) Runella slithyformis DSM 19594 10871811 YP_004656786.1 CDS Runsl_3279 NC_015703.1 3831742 3832650 R PFAM: SMP-30/Gluconolaconase/LRE-like region; SMP-30/gluconolaconase/LRE-like region-containing protein complement(3831742..3832650) Runella slithyformis DSM 19594 10871812 YP_004656787.1 CDS Runsl_3280 NC_015703.1 3832741 3833241 R COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: sli:Slin_0503 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: Two-component system response regulator, LytR/AlgR family; hypothetical protein complement(3832741..3833241) Runella slithyformis DSM 19594 10871813 YP_004656788.1 CDS Runsl_3281 NC_015703.1 3833262 3833627 R PFAM: LytTr DNA-binding domain; InterPro IPR006626; KEGG: gsu:GSU0754 fibronectin type III domain-containing protein; SPTR: Outer membrane autotransporter; response regulator receiver protein complement(3833262..3833627) Runella slithyformis DSM 19594 10871814 YP_004656789.1 CDS Runsl_3282 NC_015703.1 3833636 3838684 R COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_6125 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; hypothetical protein complement(3833636..3838684) Runella slithyformis DSM 19594 10871815 YP_004656790.1 CDS Runsl_3283 NC_015703.1 3839023 3839736 D PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: sli:Slin_6126 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase; LytTR family two component transcriptional regulator 3839023..3839736 Runella slithyformis DSM 19594 10871816 YP_004656791.1 CDS Runsl_3284 NC_015703.1 3839782 3841638 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; histidine kinase 3839782..3841638 Runella slithyformis DSM 19594 10871817 YP_004656792.1 CDS Runsl_3285 NC_015703.1 3841715 3841891 D COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: mtt:Ftrac_2592 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; SPTR: Histone family protein DNA-binding protein; hypothetical protein 3841715..3841891 Runella slithyformis DSM 19594 10871818 YP_004656793.1 CDS Runsl_3286 NC_015703.1 3841918 3842193 R PFAM: Bacterial DNA-binding protein; KEGG: osp:Odosp_1433 hypothetical protein; SPTR: uncharacterized protein; histone family protein DNA-binding protein complement(3841918..3842193) Runella slithyformis DSM 19594 10871819 YP_004656794.1 CDS Runsl_3287 NC_015703.1 3842144 3842602 R InterPro IPR000595; KEGG: mtt:Ftrac_2031 transcriptional regulator, crp/fnr family; PFAM: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; hypothetical protein complement(3842144..3842602) Runella slithyformis DSM 19594 10871820 YP_004656795.1 CDS Runsl_3288 NC_015703.1 3842630 3843199 R PFAM: Cyclic nucleotide-binding domain; cyclic nucleotide-binding protein complement(3842630..3843199) Runella slithyformis DSM 19594 10871821 YP_004656796.1 CDS Runsl_3289 NC_015703.1 3843538 3843786 D COGs: COG1171 Threonine dehydratase; InterPro IPR001926; KEGG: sli:Slin_1010 pyridoxal-5'-phosphate-dependent protein subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Serine racemase; SPTR: Pyridoxal-5'-phosphate-dependent protein beta subunit; hypothetical protein 3843538..3843786 Runella slithyformis DSM 19594 10871822 YP_004656797.1 CDS Runsl_3290 NC_015703.1 3843854 3844825 D PFAM: Pyridoxal-phosphate dependent enzyme; COGs: COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA; InterPro IPR010386; KEGG: dfe:Dfer_2373 tRNA-hydroxylase; PFAM: tRNA--hydroxylase; SPTR: tRNA-hydroxylase; serine racemase 3843854..3844825 Runella slithyformis DSM 19594 10871823 YP_004656798.1 CDS Runsl_3291 NC_015703.1 3844941 3845531 D PFAM: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); COGs: COG1252 NADH dehydrogenase FAD-containing subunit; InterPro IPR013027; KEGG: sli:Slin_5734 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: NADH dehydrogenase (ubiquinone); SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; tRNA-hydroxylase 3844941..3845531 Runella slithyformis DSM 19594 10871824 YP_004656799.1 CDS Runsl_3292 NC_015703.1 3845948 3847288 D PFAM: Pyridine nucleotide-disulphide oxidoreductase; manually curated; NADH dehydrogenase (ubiquinone) 3845948..3847288 Runella slithyformis DSM 19594 10871825 YP_004656800.1 CDS Runsl_3294 NC_015703.1 3848001 3848183 R KEGG: ral:Rumal_0689 hypothetical protein; SPTR: ATP/GTP-binding protein; hypothetical protein complement(3848001..3848183) Runella slithyformis DSM 19594 10871827 YP_004656801.1 CDS Runsl_3295 NC_015703.1 3848283 3849794 R InterPro IPR001387; KEGG: hdu:HD1096 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix domain protein; hypothetical protein complement(3848283..3849794) Runella slithyformis DSM 19594 10871828 YP_004656802.1 CDS Runsl_3296 NC_015703.1 3849834 3850385 R PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein complement(3849834..3850385) Runella slithyformis DSM 19594 10871829 YP_004656803.1 CDS Runsl_3297 NC_015703.1 3850336 3850440 R hypothetical protein complement(3850336..3850440) Runella slithyformis DSM 19594 10871830 YP_004656804.1 CDS Runsl_3298 NC_015703.1 3850473 3850694 D InterPro IPR002104; KEGG: bvu:BVU_2095 transposase; PFAM: Integrase, catalytic core, phage; SPTR: Site-specific recombinase, phage integrase; hypothetical protein 3850473..3850694 Runella slithyformis DSM 19594 10871831 YP_004656805.1 CDS Runsl_3299 NC_015703.1 3850767 3852041 D PFAM: Phage integrase; COGs: COG5545 P-loop ATPase and inactivated derivatives; KEGG: fps:FP0491 hypothetical protein; SPTR: uncharacterized protein; integrase 3850767..3852041 Runella slithyformis DSM 19594 10871832 YP_004656806.1 CDS Runsl_3300 NC_015703.1 3852154 3853335 D PFAM: Virulence-associated protein E; InterPro IPR002694; KEGG: pgi:PG0841 mobilizable transposon, excision protein, SPTR: Mobilizable transposon, excision protein; hypothetical protein 3852154..3853335 Runella slithyformis DSM 19594 10871833 YP_004656807.1 CDS Runsl_3301 NC_015703.1 3853685 3854557 D PFAM: CHC2 zinc finger; mobilizable transposon, excision protein 3853685..3854557 Runella slithyformis DSM 19594 10871834 YP_004656808.1 CDS Runsl_3302 NC_015703.1 3854729 3854947 D InterPro IPR000477; KEGG: fjo:Fjoh_2333 hypothetical protein; PFAM: RNA-directed DNA polymerase (reverse transcriptase); SPTR: uncharacterized protein; hypothetical protein 3854729..3854947 Runella slithyformis DSM 19594 10871835 YP_004656809.1 CDS Runsl_3303 NC_015703.1 3854989 3856467 R PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); RNA-directed DNA polymerase complement(3854989..3856467) Runella slithyformis DSM 19594 10871836 YP_004656810.1 CDS Runsl_3304 NC_015703.1 3857080 3857193 D hypothetical protein 3857080..3857193 Runella slithyformis DSM 19594 10871837 YP_004656811.1 CDS Runsl_3305 NC_015703.1 3857683 3858843 D PFAM: Acyltransferase; InterPro IPR008207; KEGG: sli:Slin_3142 multi-sensor hybrid histidine kinase; PFAM: Signal transduction histidine kinase, phosphotransfer (Hpt) region; SPTR: Sensory box histidine kinase/response regulator; hypothetical protein 3857683..3858843 Runella slithyformis DSM 19594 10871839 YP_004656812.1 CDS Runsl_3306 NC_015703.1 3858855 3859208 R PFAM: Hpt domain; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR003593:IPR002078:IPR002197; KEGG: sli:Slin_3143 two component, sigma54 specific, fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; SPTR: Nitrogen regulation protein NR(I); Hpt domain-containing protein complement(3858855..3859208) Runella slithyformis DSM 19594 10871840 YP_004656813.1 CDS Runsl_3307 NC_015703.1 3859253 3860608 R PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: dfe:Dfer_5736 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; Fis family transcriptional regulator complement(3859253..3860608) Runella slithyformis DSM 19594 10871841 YP_004656814.1 CDS Runsl_3308 NC_015703.1 3860868 3861758 R PFAM: Cupin domain; Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR010496; KEGG: sli:Slin_0438 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; AraC family transcriptional regulator complement(3860868..3861758) Runella slithyformis DSM 19594 10871842 YP_004656815.1 CDS Runsl_3309 NC_015703.1 3861894 3862625 D PFAM: Domain of Unknown Function (DUF1080); COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: sli:Slin_0047 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; hypothetical protein 3861894..3862625 Runella slithyformis DSM 19594 10871843 YP_004656816.1 CDS Runsl_3310 NC_015703.1 3862622 3864004 D PFAM: Oxidoreductase, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sus:Acid_5864 xylose isomerase domain-containing protein; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; oxidoreductase domain-containing protein 3862622..3864004 Runella slithyformis DSM 19594 10871844 YP_004656817.1 CDS Runsl_3311 NC_015703.1 3864022 3864912 D PFAM: Xylose isomerase-like TIM barrel; manually curated; xylose isomerase domain-containing protein 3864022..3864912 Runella slithyformis DSM 19594 10871845 YP_004656818.1 CDS Runsl_3313 NC_015703.1 3865158 3865946 D PFAM: Phytanoyl-CoA dioxygenase (PhyH); InterPro IPR012307; KEGG: sli:Slin_2651 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; phytanoyl-CoA dioxygenase 3865158..3865946 Runella slithyformis DSM 19594 10871847 YP_004656819.1 CDS Runsl_3314 NC_015703.1 3866038 3866850 D PFAM: Xylose isomerase-like TIM barrel; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: fjo:Fjoh_4121 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: 3-oxoacyl-[acyl-carrier-protein] reductase; xylose isomerase domain-containing protein 3866038..3866850 Runella slithyformis DSM 19594 10871848 YP_004656820.1 CDS Runsl_3315 NC_015703.1 3867246 3868010 D PFAM: short chain dehydrogenase; Prodigal; manually curated; 3-oxoacyl-ACP reductase 3867246..3868010 Runella slithyformis DSM 19594 10871849 YP_004656821.1 CDS Runsl_3317 NC_015703.1 3868489 3869634 D PFAM: FMN-dependent dehydrogenase; COGs: COG2610 H+/gluconate symporter and related permease; InterPro IPR003474; KEGG: sli:Slin_3386 gluconate transporter; PFAM: Gluconate transporter; SPTR: Gluconate transporter; TIGRFAM: Gluconate transporter; L-lactate dehydrogenase (cytochrome) 3868489..3869634 Runella slithyformis DSM 19594 10871851 YP_004656822.1 CDS Runsl_3318 NC_015703.1 3869655 3870971 D PFAM: GntP family permease; TIGRFAM: gluconate transporter; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: dfe:Dfer_1462 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; gluconate transporter 3869655..3870971 Runella slithyformis DSM 19594 10871852 YP_004656823.1 CDS Runsl_3319 NC_015703.1 3871045 3871632 D PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: dfe:Dfer_1461 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; ECF subfamily RNA polymerase sigma-24 subunit 3871045..3871632 Runella slithyformis DSM 19594 10871853 YP_004656824.1 CDS Runsl_3320 NC_015703.1 3871732 3872838 D PFAM: FecR protein; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: bfr:BF0666 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: Outer membrane protein; anti-FecI sigma factor FecR 3871732..3872838 Runella slithyformis DSM 19594 10871854 YP_004656825.1 CDS Runsl_3321 NC_015703.1 3873026 3876451 D PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: sli:Slin_0095 hypothetical protein; SPTR: Lipoprotein; TonB-dependent receptor plug 3873026..3876451 Runella slithyformis DSM 19594 10871855 YP_004656826.1 CDS Runsl_3322 NC_015703.1 3876481 3877935 D COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR002218:IPR006311; KEGG: plm:Plim_0117 HI0933 family protein; PFAM: Glucose-inhibited division protein A-related; SPTR: HI0933 family protein; hypothetical protein 3876481..3877935 Runella slithyformis DSM 19594 10871856 YP_004656827.1 CDS Runsl_3323 NC_015703.1 3878000 3879433 D PFAM: Thi4 family; InterPro IPR002218; KEGG: plm:Plim_0117 HI0933 family protein; PFAM: Glucose-inhibited division protein A-related; SPTR: uncharacterized protein; glucose-inhibited division protein A 3878000..3879433 Runella slithyformis DSM 19594 10871857 YP_004656828.1 CDS Runsl_3324 NC_015703.1 3879463 3880818 D PFAM: Pyridine nucleotide-disulphide oxidoreductase; KEGG: sli:Slin_6546 hypothetical protein; SPTR: uncharacterized protein; glucose-inhibited division protein A 3879463..3880818 Runella slithyformis DSM 19594 10871858 YP_004656829.1 CDS Runsl_3325 NC_015703.1 3880903 3882192 D SPTR: uncharacterized protein; hypothetical protein 3880903..3882192 Runella slithyformis DSM 19594 10871859 YP_004656830.1 CDS Runsl_3326 NC_015703.1 3882382 3883809 D InterPro IPR011701; KEGG: dfe:Dfer_4712 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; hypothetical protein 3882382..3883809 Runella slithyformis DSM 19594 10871860 YP_004656831.1 CDS Runsl_3327 NC_015703.1 3883945 3885186 D PFAM: Major Facilitator Superfamily; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR003313:IPR000005; KEGG: dfe:Dfer_5736 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; AraC protein, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; major facilitator superfamily protein 3883945..3885186 Runella slithyformis DSM 19594 10871861 YP_004656832.1 CDS Runsl_3328 NC_015703.1 3885248 3886114 R PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; Prodigal; manually curated; AraC family transcriptional regulator complement(3885248..3886114) Runella slithyformis DSM 19594 10871862 YP_004656833.1 CDS Runsl_3331 NC_015703.1 3887190 3888149 D PFAM: Transposase IS116/IS110/IS902 family; Transposase; manually curated; transposase IS116/IS110/IS902 family protein 3887190..3888149 Runella slithyformis DSM 19594 10871865 YP_004656834.1 CDS Runsl_3333 NC_015703.1 3888614 3888835 D PFAM: Helix-turn-helix; TIGRFAM: transcriptional regulator, y4mF family; InterPro IPR017508; KEGG: cpc:Cpar_0147 HipA N-terminal domain-containing protein; SPTR: HipA N-terminal domain protein; TIGRFAM: HipA, N-terminal; transcriptional regulator 3888614..3888835 Runella slithyformis DSM 19594 10871867 YP_004656835.1 CDS Runsl_3334 NC_015703.1 3888822 3889154 D TIGRFAM: HipA N-terminal domain; COGs: COG3550 conserved hypothetical protein; InterPro IPR012894:IPR012893; KEGG: cpb:Cphamn1_2166 HipA domain-containing protein; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; SPTR: HipA domain protein; HipA N-terminal domain-containing protein 3888822..3889154 Runella slithyformis DSM 19594 10871868 YP_004656836.1 CDS Runsl_3335 NC_015703.1 3889151 3890095 D PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain; manually curated; HipA domain-containing protein 3889151..3890095 Runella slithyformis DSM 19594 10871869 YP_004656837.1 CDS Runsl_3337 NC_015703.1 3890643 3892367 D hypothetical protein 3890643..3892367 Runella slithyformis DSM 19594 10871871 YP_004656838.1 CDS Runsl_3338 NC_015703.1 3892364 3893086 D hypothetical protein 3892364..3893086 Runella slithyformis DSM 19594 10871872 YP_004656839.1 CDS Runsl_3339 NC_015703.1 3893094 3893348 D KEGG: psa:PST_0632 type I restriction-modification system, S subunit; SPTR: Type I restriction-modification system, S subunit; hypothetical protein 3893094..3893348 Runella slithyformis DSM 19594 10871873 YP_004656840.1 CDS Runsl_3340 NC_015703.1 3893450 3893758 R COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; InterPro IPR001437; KEGG: pol:Bpro_1952 superfamily I DNA/RNA helicase; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic; SPTR: Superfamily I DNA and RNA helicases and helicase subunits-like; type I restriction-modification system subunit S complement(3893450..3893758) Runella slithyformis DSM 19594 10871874 YP_004656841.1 CDS Runsl_3341 NC_015703.1 3893805 3900041 R PFAM: Transcription elongation factor, GreA/GreB, C-term; COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; KEGG: fjo:Fjoh_3602 phospholipase D/transphosphatidylase; SPTR: Phospholipase D/Transphosphatidylase; transcription elongation factor GreA/GreB domain-containing protein complement(3893805..3900041) Runella slithyformis DSM 19594 10871875 YP_004656842.1 CDS Runsl_3342 NC_015703.1 3900362 3901222 R PFAM: Protein of unknown function (DUF1669); COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: cni:Calni_1850 restriction modification system DNA specificity domain; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Type-1 restriction enzyme EcoDI specificity protein; phospholipase D/transphosphatidylase complement(3900362..3901222) Runella slithyformis DSM 19594 10871876 YP_004656843.1 CDS Runsl_3343 NC_015703.1 3901289 3902668 R PFAM: Type I restriction modification DNA specificity domain; COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: nth:Nther_1992 N-6 DNA methylase; PFAM: DNA methylase, adenine-specific; SPTR: Type I restriction-modification enzyme, M subunit; restriction modification system DNA specificity domain-containing protein complement(3901289..3902668) Runella slithyformis DSM 19594 10871877 YP_004656844.1 CDS Runsl_3344 NC_015703.1 3902668 3904128 R PFAM: N-6 DNA Methylase; HsdM N-terminal domain; COGs: COG4096 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014001:IPR007409:IPR006935:IPR001650; KEGG: gtn:GTNG_0761 type I restriction enzyme EcoKI subunit R; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; DNA/RNA helicase, C-terminal; PRIAM: Type I site-specific deoxyribonuclease; SMART: DEAD-like helicase, N-terminal; SPTR: Type III restriction protein res subunit; N-6 DNA methylase complement(3902668..3904128) Runella slithyformis DSM 19594 10871878 YP_004656845.1 CDS Runsl_3345 NC_015703.1 3904133 3907372 R PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Helicase conserved C-terminal domain; Domain of unknown function (DUF3559); Type III restriction enzyme, res subunit; InterPro IPR002104; KEGG: dfe:Dfer_5531 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Integrase; type I site-specific deoxyribonuclease complement(3904133..3907372) Runella slithyformis DSM 19594 10871879 YP_004656846.1 CDS Runsl_3346 NC_015703.1 3908062 3909429 D PFAM: Phage integrase; integrase 3908062..3909429 Runella slithyformis DSM 19594 10871880 YP_004656847.1 CDS Runsl_3347 NC_015703.1 3909528 3910418 D hypothetical protein 3909528..3910418 Runella slithyformis DSM 19594 10871881 YP_004656848.1 CDS Runsl_3348 NC_015703.1 3910568 3910846 D InterPro IPR014883; KEGG: fps:FP0626 hypothetical protein; PFAM: VRR-NUC; SPTR: uncharacterized protein; hypothetical protein 3910568..3910846 Runella slithyformis DSM 19594 10871882 YP_004656849.1 CDS Runsl_3349 NC_015703.1 3910833 3911258 D PFAM: VRR-NUC domain; VRR-NUC domain-containing protein 3910833..3911258 Runella slithyformis DSM 19594 10871883 YP_004656850.1 CDS Runsl_3350 NC_015703.1 3911331 3911579 D KEGG: fps:FP0625 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3911331..3911579 Runella slithyformis DSM 19594 10871884 YP_004656851.1 CDS Runsl_3351 NC_015703.1 3911582 3912277 D KEGG: sli:Slin_3285 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3911582..3912277 Runella slithyformis DSM 19594 10871885 YP_004656852.1 CDS Runsl_3352 NC_015703.1 3912471 3912758 D hypothetical protein 3912471..3912758 Runella slithyformis DSM 19594 10871886 YP_004656853.1 CDS Runsl_3353 NC_015703.1 3912755 3913000 D hypothetical protein 3912755..3913000 Runella slithyformis DSM 19594 10871887 YP_004656854.1 CDS Runsl_3354 NC_015703.1 3912993 3913190 D hypothetical protein 3912993..3913190 Runella slithyformis DSM 19594 10871888 YP_004656855.1 CDS Runsl_3355 NC_015703.1 3913174 3913428 D InterPro IPR006448; SPTR: uncharacterized protein; TIGRFAM: Phage terminase, small subunit, , P27; hypothetical protein 3913174..3913428 Runella slithyformis DSM 19594 10871889 YP_004656856.1 CDS Runsl_3356 NC_015703.1 3913535 3913996 D PFAM: Phage terminase, small subunit; TIGRFAM: phage terminase, small subunit, , P27 family; phage terminase small subunit 3913535..3913996 Runella slithyformis DSM 19594 10871890 YP_004656857.1 CDS Runsl_3357 NC_015703.1 3914283 3914663 R PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: ModE molybdate transport repressor domain; ModE family transcriptional regulator complement(3914283..3914663) Runella slithyformis DSM 19594 10871892 YP_004656858.1 CDS Runsl_3358 NC_015703.1 3915128 3915490 D Prodigal; manually curated; hypothetical protein 3915128..3915490 Runella slithyformis DSM 19594 10871894 YP_004656859.1 CDS Runsl_3360 NC_015703.1 3916660 3916884 D hypothetical protein 3916660..3916884 Runella slithyformis DSM 19594 10871896 YP_004656860.1 CDS Runsl_3361 NC_015703.1 3916881 3917075 D KEGG: ttr:Tter_2666 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3916881..3917075 Runella slithyformis DSM 19594 10871897 YP_004656861.1 CDS Runsl_3362 NC_015703.1 3917251 3918816 D COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dfe:Dfer_4877 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein 3917251..3918816 Runella slithyformis DSM 19594 10871898 YP_004656862.1 CDS Runsl_3363 NC_015703.1 3918820 3920028 D PFAM: Predicted permease; COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; KEGG: swd:Swoo_0898 coenzyme PQQ synthesis protein B; SPTR: Coenzyme PQQ synthesis protein B; hypothetical protein 3918820..3920028 Runella slithyformis DSM 19594 10871899 YP_004656863.1 CDS Runsl_3364 NC_015703.1 3920029 3920940 R PFAM: Metallo-beta-lactamase superfamily; TIGRFAM: coenzyme PQQ biosynthesis protein B; Prodigal; manually curated; coenzyme PQQ synthesis protein B complement(3920029..3920940) Runella slithyformis DSM 19594 10871900 YP_004656864.1 CDS Runsl_3366 NC_015703.1 3921801 3923909 D PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; NAD-dependent DNA ligase C4 zinc finger domain; BRCA1 C Terminus (BRCT) domain; TIGRFAM: DNA ligase, NAD-dependent; DNA ligase 3921801..3923909 Runella slithyformis DSM 19594 10871902 YP_004656865.1 CDS Runsl_3367 NC_015703.1 3923975 3924190 D COGs: COG5378 nucleotide-binding protein; InterPro IPR019298; KEGG: dfe:Dfer_4982 hypothetical protein; PFAM: Nucleotide-binding protein, PIN domain; SPTR: Predicted nucleic acid-binding protein, containing PIN domain; hypothetical protein 3923975..3924190 Runella slithyformis DSM 19594 10871903 YP_004656866.1 CDS Runsl_3368 NC_015703.1 3924183 3924596 D PFAM: Predicted nucleotide-binding protein, containing PIN domain; COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; InterPro IPR000836; KEGG: dfe:Dfer_2676 phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; PRIAM: Uracil phosphoribosyltransferase; SPTR: Phosphoribosyltransferase; Nucleotide-binding protein, PIN domain-containing protein 3924183..3924596 Runella slithyformis DSM 19594 10871904 YP_004656867.1 CDS Runsl_3369 NC_015703.1 3924616 3925149 D PFAM: Phosphoribosyl transferase domain; InterPro IPR004518; KEGG: ppn:Palpr_2194 MazG nucleotide pyrophosphohydrolase; PFAM: NTP pyrophosphohydrolase MazG, catalytic core; SPTR: MazG nucleotide pyrophosphohydrolase; uracil phosphoribosyltransferase 3924616..3925149 Runella slithyformis DSM 19594 10871905 YP_004656868.1 CDS Runsl_3370 NC_015703.1 3925292 3925645 D PFAM: MazG nucleotide pyrophosphohydrolase domain; nucleotide pyrophosphohydrolase 3925292..3925645 Runella slithyformis DSM 19594 10871906 YP_004656869.1 CDS Runsl_3371 NC_015703.1 3925728 3926546 R COGs: COG2816 NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding; InterPro IPR000086; KEGG: hch:HCH_01478 ADP-ribose pyrophosphatase; PFAM: NUDIX hydrolase domain; SPTR: ADP-ribose pyrophosphatase; hypothetical protein complement(3925728..3926546) Runella slithyformis DSM 19594 10871907 YP_004656870.1 CDS Runsl_3372 NC_015703.1 3926771 3927271 D PFAM: NUDIX domain; InterPro IPR008454:IPR001434; KEGG: sli:Slin_0184 hypothetical protein; PFAM: Protein of unknown function DUF11; Collagen-binding surface protein Cna-like, B region; SPTR: uncharacterized protein; TIGRFAM: Protein of unknown function DUF11; NUDIX hydrolase 3926771..3927271 Runella slithyformis DSM 19594 10871908 YP_004656871.1 CDS Runsl_3373 NC_015703.1 3927345 3933035 R PFAM: Cna protein B-type domain; TIGRFAM: conserved repeat domain; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: sli:Slin_0190 histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: Histidine kinase; hypothetical protein complement(3927345..3933035) Runella slithyformis DSM 19594 10871909 YP_004656872.1 CDS Runsl_3374 NC_015703.1 3933534 3935399 R PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Protein of unknown function (DUF2681); COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_0191 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; histidine kinase complement(3933534..3935399) Runella slithyformis DSM 19594 10871910 YP_004656873.1 CDS Runsl_3375 NC_015703.1 3935465 3936160 R PFAM: Response regulator receiver domain; LytTr DNA-binding domain; LytTR family two component transcriptional regulator complement(3935465..3936160) Runella slithyformis DSM 19594 10871911 YP_004656874.1 CDS Runsl_3376 NC_015703.1 3936541 3936717 R COGs: COG1983 stress-responsive transcriptional regulator protein; InterPro IPR007168; KEGG: dfe:Dfer_4257 phage shock protein C, PspC; PFAM: PspC; SPTR: Phage shock protein C, PspC; hypothetical protein complement(3936541..3936717) Runella slithyformis DSM 19594 10871912 YP_004656875.1 CDS Runsl_3377 NC_015703.1 3936857 3939406 R PFAM: PspC domain; Protein of unknown function (DUF2807); COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: dfe:Dfer_4256 transcriptional regulator, PadR-like family; PFAM: Transcriptional regulator PadR N-terminal-like; SPTR: Transcriptional regulator, PadR-like family; phage shock protein PspC complement(3936857..3939406) Runella slithyformis DSM 19594 10871913 YP_004656876.1 CDS Runsl_3378 NC_015703.1 3939452 3939862 R PFAM: Transcriptional regulator PadR-like family; COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: sli:Slin_2433 multiple antibiotic resistance (MarC)-related protein; PFAM: Multiple antibiotic resistance (MarC)-related; SPTR: Multiple antibiotic resistance (MarC)-related protein; PadR-like family transcriptional regulator complement(3939452..3939862) Runella slithyformis DSM 19594 10871914 YP_004656877.1 CDS Runsl_3379 NC_015703.1 3940083 3940775 D PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family; COGs: COG0730 permease; InterPro IPR002781; KEGG: ppn:Palpr_0078 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: uncharacterized protein; multiple antibiotic resistance (MarC)-like protein 3940083..3940775 Runella slithyformis DSM 19594 10871915 YP_004656878.1 CDS Runsl_3380 NC_015703.1 3940878 3941732 D PFAM: Sulfite exporter TauE/SafE; COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: dfe:Dfer_2399 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; hypothetical protein 3940878..3941732 Runella slithyformis DSM 19594 10871916 YP_004656879.1 CDS Runsl_3381 NC_015703.1 3941918 3942613 D PFAM: NUDIX domain; COGs: COG1069 Ribulose kinase; InterPro IPR018484:IPR018485:IPR005929; KEGG: sli:Slin_1239 L-ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; PRIAM: Ribulokinase; SPTR: Ribulokinase; TIGRFAM: L-ribulokinase; NUDIX hydrolase 3941918..3942613 Runella slithyformis DSM 19594 10871917 YP_004656880.1 CDS Runsl_3382 NC_015703.1 3942622 3944262 D PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: L-ribulokinase; COGs: COG2160 L-arabinose isomerase; HAMAP: L-arabinose isomerase; InterPro IPR003762; KEGG: lby:Lbys_2508 L-arabinose isomerase; PFAM: L-arabinose isomerase; PRIAM: L-arabinose isomerase; SPTR: L-arabinose isomerase; L-ribulokinase 3942622..3944262 Runella slithyformis DSM 19594 10871918 YP_004656881.1 CDS Runsl_3383 NC_015703.1 3944397 3945881 D PFAM: L-arabinose isomerase; L-arabinose isomerase C-terminal domain; COGs: COG3534 Alpha-L-arabinofuranosidase; InterPro IPR010720; KEGG: sli:Slin_1237 alpha-L-arabinofuranosidase domain protein; PFAM: Alpha-L-arabinofuranosidase, C-terminal; SMART: Alpha-L-arabinofuranosidase, C-terminal; SPTR: Alpha-L-arabinofuranosidase domain protein; L-arabinose isomerase 3944397..3945881 Runella slithyformis DSM 19594 10871919 YP_004656882.1 CDS Runsl_3384 NC_015703.1 3945924 3947471 D PFAM: Alpha-L-arabinofuranosidase C-terminus; COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: lby:Lbys_2507 L-ribulose 5-phosphate 4-epimerase; PFAM: Class II aldolase/adducin, N-terminal; PRIAM: L-ribulose-5-phosphate 4-epimerase; SPTR: L-ribulose 5-phosphate 4-epimerase; alpha-L-arabinofuranosidase 3945924..3947471 Runella slithyformis DSM 19594 10871920 YP_004656883.1 CDS Runsl_3385 NC_015703.1 3947543 3948268 D PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase; COGs: COG4146 symporter; InterPro IPR001734:IPR019900; KEGG: lby:Lbys_2506 sss sodium solute transporter superfamily; PFAM: Sodium/solute symporter; SPTR: SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup; L-ribulose-5-phosphate 4-epimerase 3947543..3948268 Runella slithyformis DSM 19594 10871921 YP_004656884.1 CDS Runsl_3386 NC_015703.1 3948397 3950052 D PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; KEGG: sli:Slin_4315 hypothetical protein; SPTR: uncharacterized protein; sodium solute transporter superfamily protein 3948397..3950052 Runella slithyformis DSM 19594 10871922 YP_004656885.1 CDS Runsl_3387 NC_015703.1 3950433 3950699 R COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; InterPro IPR001804:IPR014273; KEGG: sli:Slin_4313 isocitrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; SPTR: Isocitrate dehydrogenase; TIGRFAM: Isocitrate dehydrogenase bacteria; hypothetical protein complement(3950433..3950699) Runella slithyformis DSM 19594 10871923 YP_004656886.1 CDS Runsl_3388 NC_015703.1 3950711 3952183 R PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119; KEGG: sli:Slin_4312 LysR family transcriptional regulator; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; SPTR: Transcriptional regulator, LysR family; isocitrate dehydrogenase complement(3950711..3952183) Runella slithyformis DSM 19594 10871924 YP_004656887.1 CDS Runsl_3389 NC_015703.1 3952236 3953153 D PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; COGs: COG2326 conserved hypothetical protein; InterPro IPR005660; KEGG: dfe:Dfer_4378 polyphosphate:AMP phosphotransferase; PFAM: Polyphosphate kinase 2; SPTR: Polyphosphate:AMP phosphotransferase; TIGRFAM: polyphosphate:nucleotide phosphotransferase, PPK2 family; LysR family transcriptional regulator 3952236..3953153 Runella slithyformis DSM 19594 10871925 YP_004656888.1 CDS Runsl_3390 NC_015703.1 3953222 3954124 R PFAM: Polyphosphate kinase 2 (PPK2); TIGRFAM: polyphosphate:nucleotide phosphotransferase, PPK2 family; COGs: COG0642 Signal transduction histidine kinase; InterProIPR003018:IPR003661:IPR003594:IPR001789:IPR 007891; KEGG: cpi:Cpin_2257 GAF sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; CHASE3; GAF; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; Signal transduction response regulator, receiver region; SPTR: GAF sensor hybrid histidine kinase; polyphosphate:nucleotide phosphotransferase complement(3953222..3954124) Runella slithyformis DSM 19594 10871926 YP_004656889.1 CDS Runsl_3391 NC_015703.1 3954404 3957889 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; CHASE3 domain; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterPro IPR000780; KEGG: sli:Slin_1030 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase, CheR-type; PRIAM: Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase, CheR-type; SPTR: MCP methyltransferase, CheR-type; multi-sensor hybrid histidine kinase 3954404..3957889 Runella slithyformis DSM 19594 10871927 YP_004656890.1 CDS Runsl_3392 NC_015703.1 3957895 3958731 D PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain; COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; InterPro IPR000673; KEGG: cpi:Cpin_2259 CheB methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; SPTR: CheB methylesterase; chemotaxis protein CheR 3957895..3958731 Runella slithyformis DSM 19594 10871928 YP_004656891.1 CDS Runsl_3393 NC_015703.1 3958728 3959303 D PFAM: CheB methylesterase; COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR001789:IPR003661:IPR003594; KEGG: sli:Slin_1029 response regulator receiver sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SPTR: Response regulator receiver sensor signal transduction histidine kinase; chemotaxis protein CheB 3958728..3959303 Runella slithyformis DSM 19594 10871929 YP_004656892.1 CDS Runsl_3394 NC_015703.1 3959319 3960422 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; response regulator receiver sensor signal transduction histidine kinase 3959319..3960422 Runella slithyformis DSM 19594 10871930 YP_004656893.1 CDS Runsl_3395 NC_015703.1 3960701 3960820 R COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: sli:Slin_1028 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; hypothetical protein complement(3960701..3960820) Runella slithyformis DSM 19594 10871931 YP_004656894.1 CDS Runsl_3396 NC_015703.1 3961237 3961617 D PFAM: Response regulator receiver domain; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: sli:Slin_3851 sugar transferase; PFAM: Bacterial sugar transferase; SPTR: Sugar transferase; response regulator receiver protein 3961237..3961617 Runella slithyformis DSM 19594 10871932 YP_004656895.1 CDS Runsl_3397 NC_015703.1 3961688 3962848 D PFAM: Bacterial sugar transferase; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: cpi:Cpin_3709 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase, family 2; sugar transferase 3961688..3962848 Runella slithyformis DSM 19594 10871933 YP_004656896.1 CDS Runsl_3398 NC_015703.1 3962845 3963789 D PFAM: Glycosyl transferase 2; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_3862 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; family 2 glycosyl transferase 3962845..3963789 Runella slithyformis DSM 19594 10871934 YP_004656897.1 CDS Runsl_3399 NC_015703.1 3963802 3965007 D PFAM: Glycosyl transferase 2; KEGG: sli:Slin_3860 O-antigen polymerase; SPTR: O-antigen polymerase; family 2 glycosyl transferase 3963802..3965007 Runella slithyformis DSM 19594 10871935 YP_004656898.1 CDS Runsl_3400 NC_015703.1 3965038 3966504 D InterPro IPR003406; KEGG: dfe:Dfer_0169 glycosyl transferase 14; PFAM: Glycosyl transferase, family 14; SPTR: Glycosyl transferase 14; O-antigen polymerase 3965038..3966504 Runella slithyformis DSM 19594 10871936 YP_004656899.1 CDS Runsl_3401 NC_015703.1 3966744 3967580 D PFAM: Core-2/I-Branching enzyme; COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: sli:Slin_3855 acetyltransferase (isoleucine patch superfamily)-like protein; SPTR: Acetyltransferase (Isoleucine patch superfamily)-like protein; glycosyl transferase family protein 3966744..3967580 Runella slithyformis DSM 19594 10871937 YP_004656900.1 CDS Runsl_3402 NC_015703.1 3967581 3968216 R PFAM: Bacterial transferase hexapeptide (three repeats); InterPro IPR001296; KEGG: dfe:Dfer_0170 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; acetyltransferase (isoleucine patch superfamily)-like protein complement(3967581..3968216) Runella slithyformis DSM 19594 10871938 YP_004656901.1 CDS Runsl_3403 NC_015703.1 3968213 3969439 R PFAM: Glycosyl transferases group 1; group 1 glycosyl transferase complement(3968213..3969439) Runella slithyformis DSM 19594 10871939 YP_004656902.1 CDS Runsl_3404 NC_015703.1 3969645 3969851 R COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_3857 hypothetical protein; PFAM: Outer membrane efflux protein; SPTR: uncharacterized protein; hypothetical protein complement(3969645..3969851) Runella slithyformis DSM 19594 10871940 YP_004656903.1 CDS Runsl_3405 NC_015703.1 3969903 3970721 D PFAM: Outer membrane efflux protein; COGs: COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; KEGG: sli:Slin_3858 lipopolysaccharide biosynthesis protein; SPTR: Lipopolysaccharide biosynthesis protein; outer membrane efflux protein 3969903..3970721 Runella slithyformis DSM 19594 10871941 YP_004656904.1 CDS Runsl_3406 NC_015703.1 3970731 3972938 D PFAM: Chain length determinant protein; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: phe:Phep_1968 polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein; lipopolysaccharide biosynthesis protein 3970731..3972938 Runella slithyformis DSM 19594 10871942 YP_004656905.1 CDS Runsl_3407 NC_015703.1 3972965 3974401 D PFAM: Polysaccharide biosynthesis protein; COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: dfe:Dfer_0180 acyltransferase 3; PFAM: Acyltransferase 3; SPTR: Acyltransferase 3; polysaccharide biosynthesis protein 3972965..3974401 Runella slithyformis DSM 19594 10871943 YP_004656906.1 CDS Runsl_3408 NC_015703.1 3974410 3975510 D PFAM: Acyltransferase; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_0174 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; acyltransferase 3974410..3975510 Runella slithyformis DSM 19594 10871944 YP_004656907.1 CDS Runsl_3409 NC_015703.1 3975567 3976472 D PFAM: Glycosyl transferase 2; KEGG: phe:Phep_3205 hypothetical protein; SPTR: uncharacterized protein; family 2 glycosyl transferase 3975567..3976472 Runella slithyformis DSM 19594 10871945 YP_004656908.1 CDS Runsl_3410 NC_015703.1 3976568 3977494 D InterPro IPR001173; KEGG: dfe:Dfer_0173 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; hypothetical protein 3976568..3977494 Runella slithyformis DSM 19594 10871946 YP_004656909.1 CDS Runsl_3411 NC_015703.1 3977533 3978324 D PFAM: Glycosyl transferase 2; InterPro IPR001173; KEGG: dfe:Dfer_0173 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; family 2 glycosyl transferase 3977533..3978324 Runella slithyformis DSM 19594 10871947 YP_004656910.1 CDS Runsl_3412 NC_015703.1 3978457 3979242 D PFAM: Glycosyl transferase 2; InterPro IPR005084:IPR006584; KEGG: dfe:Dfer_4512 carbohydrate binding family 6; PFAM: Carbohydrate binding domain, family 6; SMART: Cellulose binding, type IV; SPTR: Carbohydrate binding family 6; family 2 glycosyl transferase 3978457..3979242 Runella slithyformis DSM 19594 10871948 YP_004656911.1 CDS Runsl_3413 NC_015703.1 3979354 3983154 R PFAM: Carbohydrate binding module (family 6); Beta-galactosidase; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_3861 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; carbohydrate binding family protein complement(3979354..3983154) Runella slithyformis DSM 19594 10871949 YP_004656912.1 CDS Runsl_3414 NC_015703.1 3983430 3984620 D PFAM: Glycosyl transferase 2; SPTR: uncharacterized protein; family 2 glycosyl transferase 3983430..3984620 Runella slithyformis DSM 19594 10871950 YP_004656913.1 CDS Runsl_3415 NC_015703.1 3984779 3985150 D PFAM: Protein of unknown function (DUF2874); COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_6754 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; hypothetical protein 3984779..3985150 Runella slithyformis DSM 19594 10871951 YP_004656914.1 CDS Runsl_3416 NC_015703.1 3985378 3986658 D PFAM: Outer membrane efflux protein; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sli:Slin_0918 efflux transporter RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; outer membrane efflux protein 3985378..3986658 Runella slithyformis DSM 19594 10871952 YP_004656915.1 CDS Runsl_3417 NC_015703.1 3986713 3987816 D PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG3696 silver efflux pump; InterPro IPR001036:IPR004763; KEGG: sli:Slin_0917 heavy metal efflux pump, CzcA family; PFAM: Acriflavin resistance protein; SPTR: Heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; RND family efflux transporter MFP subunit 3986713..3987816 Runella slithyformis DSM 19594 10871953 YP_004656916.1 CDS Runsl_3418 NC_015703.1 3987901 3991017 D PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); InterPro IPR000620; KEGG: sfu:Sfum_0926 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: uncharacterized protein; CzcA family heavy metal efflux pump 3987901..3991017 Runella slithyformis DSM 19594 10871954 YP_004656917.1 CDS Runsl_3419 NC_015703.1 3991146 3992021 D PFAM: EamA-like transporter family; KEGG: sli:Slin_0249 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3991146..3992021 Runella slithyformis DSM 19594 10871955 YP_004656918.1 CDS Runsl_3420 NC_015703.1 3992130 3992645 D KEGG: chu:CHU_0798 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3992130..3992645 Runella slithyformis DSM 19594 10871956 YP_004656919.1 CDS Runsl_3421 NC_015703.1 3992712 3993059 D COGs: COG3306 Glycosyltransferase involved in LPS biosynthesis; InterPro IPR002654; KEGG: afw:Anae109_0378 glycosyl transferase; PFAM: Glycosyl transferase, family 25; SPTR: Glycosyl transferase 25; hypothetical protein 3992712..3993059 Runella slithyformis DSM 19594 10871957 YP_004656920.1 CDS Runsl_3422 NC_015703.1 3993142 3993936 D PFAM: Glycosyltransferase 25 (LPS biosynthesis protein); COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: dfe:Dfer_4450 peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; SPTR: Peptidase M1 membrane alanine aminopeptidase; glycosyl transferase family protein 3993142..3993936 Runella slithyformis DSM 19594 10871958 YP_004656921.1 CDS Runsl_3423 NC_015703.1 3993994 3995634 R PFAM: Peptidase M1; COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011712:IPR003594; KEGG: sli:Slin_6439 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; SMART: ATP-binding region, ATPase-like; SPTR: Histidine kinase; peptidase M1 membrane alanine aminopeptidase complement(3993994..3995634) Runella slithyformis DSM 19594 10871959 YP_004656922.1 CDS Runsl_3424 NC_015703.1 3996100 3998004 D PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; KEGG: cyh:Cyan8802_3419 hypothetical protein; SPTR: uncharacterized protein; signal transduction histidine kinase 3996100..3998004 Runella slithyformis DSM 19594 10871960 YP_004656923.1 CDS Runsl_3425 NC_015703.1 3997943 3999685 R InterPro IPR002575; PFAM: Aminoglycoside phosphotransferase; hypothetical protein complement(3997943..3999685) Runella slithyformis DSM 19594 10871961 YP_004656924.1 CDS Runsl_3426 NC_015703.1 3999690 4000706 R PFAM: Phosphotransferase enzyme family; aminoglycoside phosphotransferase complement(3999690..4000706) Runella slithyformis DSM 19594 10871962 YP_004656925.1 CDS Runsl_3427 NC_015703.1 4000703 4001215 R COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); HAMAP: Protein translocase subunit secA; InterProIPR011115:IPR011130:IPR001650:IPR011116:IPR 000185; KEGG: dfe:Dfer_3555 preprotein translocase subunit SecA; PFAM: SecA DEAD-like; SecA preprotein cross-linking region; DNA/RNA helicase, C-terminal; SecA Wing/Scaffold; SPTR: Protein translocase subunit secA; TIGRFAM: SecA protein; hypothetical protein complement(4000703..4001215) Runella slithyformis DSM 19594 10871963 YP_004656926.1 CDS Runsl_3428 NC_015703.1 4001529 4004885 R PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit; InterPro IPR010496; KEGG: sli:Slin_3047 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; protein translocase subunit secA complement(4001529..4004885) Runella slithyformis DSM 19594 10871964 YP_004656927.1 CDS Runsl_3429 NC_015703.1 4005426 4006151 D PFAM: Domain of Unknown Function (DUF1080); KEGG: dfe:Dfer_2858 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4005426..4006151 Runella slithyformis DSM 19594 10871965 YP_004656928.1 CDS Runsl_3430 NC_015703.1 4006138 4006689 R PFAM: Protein of unknown function (DUF2911); COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: sli:Slin_6133 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28; hypothetical protein complement(4006138..4006689) Runella slithyformis DSM 19594 10871966 YP_004656929.1 CDS Runsl_3431 NC_015703.1 4006814 4008169 R PFAM: Peptidase M28; KEGG: sli:Slin_6634 nb031; nematoblast specific protein; SPTR: Nb031; nematoblast specific protein; peptidase M28 complement(4006814..4008169) Runella slithyformis DSM 19594 10871967 YP_004656930.1 CDS Runsl_3432 NC_015703.1 4008554 4009873 R PFAM: Domain of unknown function (DUF3472); COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; InterPro IPR001041:IPR002888; KEGG: bra:BRADO5691 xanthine dehydrogenase YagT-like, iron-sulfur binding subunit; PFAM: [2Fe-2S]-binding; Ferredoxin; PRIAM: Carbon-monoxide dehydrogenase (acceptor); SPTR: xanthine dehydrogenase YagT-like, iron-sulfur binding subunit; nb031; nematoblast specific protein complement(4008554..4009873) Runella slithyformis DSM 19594 10871968 YP_004656931.1 CDS Runsl_3433 NC_015703.1 4010080 4010616 D PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain; COGs: COG1319 Aerobic-type carbon monoxide dehydrogenase middle subunit CoxM/CutM homologs; InterPro IPR002346:IPR005107; KEGG: sli:Slin_2370 molybdopterin dehydrogenase FAD-binding protein; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal; PRIAM: Xanthine dehydrogenase; SPTR: Molybdopterin dehydrogenase FAD-binding protein; carbon monoxide dehydrogenase 4010080..4010616 Runella slithyformis DSM 19594 10871969 YP_004656932.1 CDS Runsl_3434 NC_015703.1 4010613 4011638 D PFAM: FAD binding domain in molybdopterin dehydrogenase; CO dehydrogenase flavoprotein C-terminal domain; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR000674:IPR008274; KEGG: sli:Slin_2369 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead; PRIAM: Xanthine dehydrogenase; SPTR: Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; xanthine dehydrogenase 4010613..4011638 Runella slithyformis DSM 19594 10871970 YP_004656933.1 CDS Runsl_3435 NC_015703.1 4011648 4013927 D PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; COGs: COG0177 EndoIII-related endonuclease; InterPro IPR003265:IPR003651; KEGG: sli:Slin_4204 DNA-(apurinic or apyrimidinic site) lyase; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD domain; SPTR: DNA-(Apurinic or apyrimidinic site) lyase; xanthine dehydrogenase 4011648..4013927 Runella slithyformis DSM 19594 10871971 YP_004656934.1 CDS Runsl_3436 NC_015703.1 4013911 4014573 D PFAM: HhH-GPD superfamily base excision DNA repair protein; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dfe:Dfer_0565 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; DNA-(apurinic or apyrimidinic site) lyase 4013911..4014573 Runella slithyformis DSM 19594 10871972 YP_004656935.1 CDS Runsl_3437 NC_015703.1 4014595 4015389 D PFAM: alpha/beta hydrolase fold; COGs: COG0492 Thioredoxin reductase; HAMAP: Ferredoxin--NADP reductase; InterPro IPR013027; KEGG: sli:Slin_3270 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Ferredoxin--NADP(+) reductase; SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; alpha/beta hydrolase 4014595..4015389 Runella slithyformis DSM 19594 10871973 YP_004656936.1 CDS Runsl_3438 NC_015703.1 4015603 4016607 D PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG0633 Ferredoxin; InterPro IPR001041; KEGG: sli:Slin_3269 ferredoxin; PFAM: Ferredoxin; SPTR: Ferredoxin; ferredoxin-NADP reductase 4015603..4016607 Runella slithyformis DSM 19594 10871974 YP_004656937.1 CDS Runsl_3439 NC_015703.1 4016588 4016950 D PFAM: 2Fe-2S iron-sulfur cluster binding domain; InterPro IPR006175; KEGG: chu:CHU_2496 endoribonuclease; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease, inhibits protein synthesis; ferredoxin 4016588..4016950 Runella slithyformis DSM 19594 10871975 YP_004656938.1 CDS Runsl_3440 NC_015703.1 4017035 4017421 R PFAM: Endoribonuclease L-PSP; KEGG: phe:Phep_0416 hypothetical protein; SPTR: uncharacterized protein; endoribonuclease L-PSP complement(4017035..4017421) Runella slithyformis DSM 19594 10871976 YP_004656939.1 CDS Runsl_3441 NC_015703.1 4017693 4018010 D KEGG: sli:Slin_4309 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4017693..4018010 Runella slithyformis DSM 19594 10871977 YP_004656940.1 CDS Runsl_3442 NC_015703.1 4018096 4019412 R COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; InterPro IPR002903; KEGG: sli:Slin_4428 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; SPTR: Ribosomal RNA small subunit methyltransferase H; TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; hypothetical protein complement(4018096..4019412) Runella slithyformis DSM 19594 10871978 YP_004656941.1 CDS Runsl_3443 NC_015703.1 4019752 4020654 D PFAM: MraW methylase; TIGRFAM: S-adenosyl-methyltransferase MraW; KEGG: sli:Slin_4737 hypothetical protein; SPTR: uncharacterized protein; ribosomal RNA small subunit methyltransferase H 4019752..4020654 Runella slithyformis DSM 19594 10871979 YP_004656942.1 CDS Runsl_3444 NC_015703.1 4020704 4021096 D COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311:IPR001460:IPR005543; KEGG: sli:Slin_4738 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PASTA; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Peptidoglycan glycosyltransferase; hypothetical protein 4020704..4021096 Runella slithyformis DSM 19594 10871980 YP_004656943.1 CDS Runsl_3445 NC_015703.1 4021133 4023328 D PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sli:Slin_1892 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; peptidoglycan glycosyltransferase 4021133..4023328 Runella slithyformis DSM 19594 10871981 YP_004656944.1 CDS Runsl_3446 NC_015703.1 4023504 4024370 R PFAM: Xylose isomerase-like TIM barrel; KEGG: dfe:Dfer_4258 hypothetical protein; SPTR: uncharacterized protein; xylose isomerase domain-containing protein complement(4023504..4024370) Runella slithyformis DSM 19594 10871982 YP_004656945.1 CDS Runsl_3447 NC_015703.1 4024567 4025298 D PFAM: Protein of unknown function (DUF2807); COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_2354 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; hypothetical protein 4024567..4025298 Runella slithyformis DSM 19594 10871983 YP_004656946.1 CDS Runsl_3448 NC_015703.1 4025455 4026216 R PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: dfe:Dfer_2353 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; LytTR family two component transcriptional regulator complement(4025455..4026216) Runella slithyformis DSM 19594 10871984 YP_004656947.1 CDS Runsl_3449 NC_015703.1 4026232 4026870 R PFAM: Histidine kinase; COGs: COG1017 Hemoglobin-like flavoprotein; InterPro IPR000971; KEGG: azc:AZC_0683 hemoprotein; PFAM: Globin, subset; SPTR: hemoprotein; signal transduction histidine kinase complement(4026232..4026870) Runella slithyformis DSM 19594 10871985 YP_004656948.1 CDS Runsl_3450 NC_015703.1 4026874 4027290 R PFAM: Globin; COGs: COG3292 periplasmic ligand-binding sensor domain; InterPro IPR011110:IPR011123:IPR010559; KEGG: sli:Slin_5621 PAS/PAC sensor signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, internal region; Two component regulator three Y; Two component regulator propeller; SPTR: PAS/PAC sensor signal transduction histidine kinase; globin complement(4026874..4027290) Runella slithyformis DSM 19594 10871986 YP_004656949.1 CDS Runsl_3451 NC_015703.1 4027408 4030608 R PFAM: Histidine kinase; Y_Y_Y domain; Two component regulator propeller; InterPro IPR019229; KEGG: dfe:Dfer_5116 hypothetical protein; PFAM: Protein of unknown function DUF2166; SPTR: uncharacterized protein; two component regulator propeller domain-containing protein complement(4027408..4030608) Runella slithyformis DSM 19594 10871987 YP_004656950.1 CDS Runsl_3452 NC_015703.1 4031006 4031473 D PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; hypothetical protein 4031006..4031473 Runella slithyformis DSM 19594 10871988 YP_004656951.1 CDS Runsl_3453 NC_015703.1 4031434 4031565 R KEGG: gym:GYMC10_2664 hypothetical protein; SPTR: integron gene cassette protein; hypothetical protein complement(4031434..4031565) Runella slithyformis DSM 19594 10871989 YP_004656952.1 CDS Runsl_3454 NC_015703.1 4031562 4031993 R KEGG: sli:Slin_1312 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4031562..4031993) Runella slithyformis DSM 19594 10871990 YP_004656953.1 CDS Runsl_3455 NC_015703.1 4032153 4032674 D PFAM: Protein of unknown function (DUF664); HAMAP: Protein of unknown function DUF1328; InterPro IPR009760; KEGG: fjo:Fjoh_4310 hypothetical protein; PFAM: Protein of unknown function DUF1328; SPTR: uncharacterized protein; hypothetical protein 4032153..4032674 Runella slithyformis DSM 19594 10871991 YP_004656954.1 CDS Runsl_3456 NC_015703.1 4032823 4032984 D PFAM: Protein of unknown function (DUF1328); Prodigal; manually curated; hypothetical protein 4032823..4032984 Runella slithyformis DSM 19594 10871992 YP_004656955.1 CDS Runsl_3458 NC_015703.1 4033658 4036192 D PFAM: carbohydrate binding domain; Glycosyl hydrolase 20, catalytic domain; Glycosyl hydrolase 20, domain 2; Chitobiase/beta-hexosaminidase C-terminal domain; KEGG: shg:Sph21_1312 hypothetical protein; SPTR: uncharacterized protein; beta-N-acetylhexosaminidase 4033658..4036192 Runella slithyformis DSM 19594 10871994 YP_004656956.1 CDS Runsl_3459 NC_015703.1 4036351 4036854 D PFAM: Protein of unknown function, DUF255; hypothetical protein 4036351..4036854 Runella slithyformis DSM 19594 10871995 YP_004656957.1 CDS Runsl_3460 NC_015703.1 4036776 4036988 R Prodigal; manually curated; hypothetical protein complement(4036776..4036988) Runella slithyformis DSM 19594 10871996 YP_004656958.1 CDS Runsl_3462 NC_015703.1 4037842 4038054 R KEGG: npu:Npun_F6101 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4037842..4038054) Runella slithyformis DSM 19594 10871998 YP_004656959.1 CDS Runsl_3463 NC_015703.1 4038089 4038397 R InterPro IPR004843; KEGG: ppn:Palpr_0422 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; hypothetical protein complement(4038089..4038397) Runella slithyformis DSM 19594 10871999 YP_004656960.1 CDS Runsl_3464 NC_015703.1 4038465 4039241 D PFAM: Calcineurin-like phosphoesterase; COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: dfe:Dfer_3770 amino acid permease-associated region; PFAM: Amino acid permease-associated region; SPTR: Amino acid permease-associated region; metallophosphoesterase 4038465..4039241 Runella slithyformis DSM 19594 10872000 YP_004656961.1 CDS Runsl_3465 NC_015703.1 4039244 4040590 R PFAM: Amino acid permease; KEGG: sli:Slin_5705 hypothetical protein; SPTR: uncharacterized protein; amino acid permease complement(4039244..4040590) Runella slithyformis DSM 19594 10872001 YP_004656962.1 CDS Runsl_3466 NC_015703.1 4040755 4041387 D KEGG: bbe:BBR47_05840 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4040755..4041387 Runella slithyformis DSM 19594 10872002 YP_004656963.1 CDS Runsl_3467 NC_015703.1 4041454 4041999 D COGs: COG0763 Lipid A disaccharide synthetase; InterPro IPR003835; KEGG: dfe:Dfer_2572 lipid-A-disaccharide synthase; PFAM: Glycosyl transferase, family 19; PRIAM: Lipid-A-disaccharide synthase; SPTR: Lipid-A-disaccharide synthase; TIGRFAM: Glycosyl transferase, family 19; hypothetical protein 4041454..4041999 Runella slithyformis DSM 19594 10872003 YP_004656964.1 CDS Runsl_3468 NC_015703.1 4042005 4043159 R PFAM: Lipid-A-disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase; COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: dfe:Dfer_2573 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; PFAM: 6-pyruvoyl tetrahydropterin synthase-related; SPTR: uncharacterized protein; lipid-A-disaccharide synthase complement(4042005..4043159) Runella slithyformis DSM 19594 10872004 YP_004656965.1 CDS Runsl_3469 NC_015703.1 4043440 4043859 R PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: 6-pyruvoyl tetrahydropterin synthase/QueD family protein; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR011912; KEGG: sli:Slin_3451 ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: ADP-glyceromanno-heptose 6-epimerase; SPTR: ADP-L-glycero-D-manno-heptose-6-epimerase; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; hypothetical protein complement(4043440..4043859) Runella slithyformis DSM 19594 10872005 YP_004656966.1 CDS Runsl_3470 NC_015703.1 4044127 4045092 D PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; COGs: COG0789 transcriptional regulator protein; InterPro IPR000551:IPR006158; KEGG: sli:Slin_5173 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; Cobalamin (vitamin B12)-binding; SMART: HTH transcriptional regulator, MerR; SPTR: Transcriptional regulator, MerR family; ADP-L-glycero-D-manno-heptose-6-epimerase 4044127..4045092 Runella slithyformis DSM 19594 10872006 YP_004656967.1 CDS Runsl_3471 NC_015703.1 4045089 4045964 R PFAM: MerR family regulatory protein; COGs: COG2324 membrane protein; InterPro IPR007354; KEGG: mtt:Ftrac_1977 hypothetical protein; PFAM: Protein of unknown function DUF422; SPTR: Membrane protein; MerR family transcriptional regulator complement(4045089..4045964) Runella slithyformis DSM 19594 10872007 YP_004656968.1 CDS Runsl_3472 NC_015703.1 4046272 4046937 R PFAM: Protein of unknown function (DUF422); hypothetical protein complement(4046272..4046937) Runella slithyformis DSM 19594 10872008 YP_004656969.1 CDS Runsl_3473 NC_015703.1 4047312 4047758 D PFAM: Yqey-like protein; InterPro IPR003825; KEGG: sli:Slin_4988 colicin V production protein; PFAM: Colicin V production protein; SPTR: Colicin V production protein; hypothetical protein 4047312..4047758 Runella slithyformis DSM 19594 10872010 YP_004656970.1 CDS Runsl_3474 NC_015703.1 4047767 4048291 D PFAM: Colicin V production protein; COGs: COG5495 conserved hypothetical protein; InterPro IPR004455:IPR018931; KEGG: dfe:Dfer_3502 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; PFAM: Domain of unknown function DUF2520; NADP oxidoreductase, coenzyme F420-dependent; SPTR: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; colicin V production protein 4047767..4048291 Runella slithyformis DSM 19594 10872011 YP_004656971.1 CDS Runsl_3475 NC_015703.1 4048334 4049122 R PFAM: Domain of unknown function (DUF2520); Rossmann-like domain; KEGG: dfe:Dfer_2807 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4048334..4049122) Runella slithyformis DSM 19594 10872012 YP_004656972.1 CDS Runsl_3476 NC_015703.1 4049288 4050871 R COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_1017 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein complement(4049288..4050871) Runella slithyformis DSM 19594 10872013 YP_004656973.1 CDS Runsl_3477 NC_015703.1 4050945 4051541 R PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: sli:Slin_0232 hypothetical protein; SPTR: uncharacterized protein; ECF subfamily RNA polymerase sigma-24 subunit complement(4050945..4051541) Runella slithyformis DSM 19594 10872014 YP_004656974.1 CDS Runsl_3478 NC_015703.1 4051746 4052375 D PFAM: Protein of unknown function (DUF2874); hypothetical protein 4051746..4052375 Runella slithyformis DSM 19594 10872015 YP_004656975.1 CDS Runsl_3479 NC_015703.1 4053069 4053326 D COGs: COG0038 Chloride channel protein EriC; InterPro IPR001807; KEGG: fjo:Fjoh_2371 Cl-channel, voltage-gated family protein; PFAM: Chloride channel, voltage gated; SPTR: uncharacterized protein; hypothetical protein 4053069..4053326 Runella slithyformis DSM 19594 10872016 YP_004656976.1 CDS Runsl_3480 NC_015703.1 4053529 4054767 R PFAM: Voltage gated chloride channel; InterPro IPR012910; KEGG: sli:Slin_2376 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; Cl- channel voltage-gated family protein complement(4053529..4054767) Runella slithyformis DSM 19594 10872017 YP_004656977.1 CDS Runsl_3481 NC_015703.1 4054942 4057338 R COGs: COG2839 conserved hypothetical protein; InterPro IPR007403; KEGG: lby:Lbys_1596 hypothetical protein; PFAM: Protein of unknown function DUF456; SPTR: uncharacterized protein; TonB-dependent receptor plug complement(4054942..4057338) Runella slithyformis DSM 19594 10872018 YP_004656978.1 CDS Runsl_3482 NC_015703.1 4057627 4058103 R PFAM: Protein of unknown function (DUF456); COGs: COG1748 Saccharopine dehydrogenase and related protein; InterPro IPR005097; KEGG: dfe:Dfer_2888 saccharopine dehydrogenase; PFAM: Saccharopine dehydrogenase; SPTR: Saccharopine dehydrogenase; hypothetical protein complement(4057627..4058103) Runella slithyformis DSM 19594 10872019 YP_004656979.1 CDS Runsl_3483 NC_015703.1 4058432 4059643 D PFAM: Saccharopine dehydrogenase; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR001140:IPR003439:IPR003593; KEGG: dfe:Dfer_4763 ABC transporter related; PFAM: ABC transporter-like; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; saccharopine dehydrogenase 4058432..4059643 Runella slithyformis DSM 19594 10872020 YP_004656980.1 CDS Runsl_3484 NC_015703.1 4059716 4061479 R PFAM: ABC transporter; ABC transporter transmembrane region; KEGG: sli:Slin_0566 hypothetical protein; SPTR: uncharacterized protein; manually curated; xenobiotic-transporting ATPase complement(4059716..4061479) Runella slithyformis DSM 19594 10872021 YP_004656981.1 CDS Runsl_3485 NC_015703.1 4061751 4064999 D KEGG: sli:Slin_1651 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4061751..4064999 Runella slithyformis DSM 19594 10872022 YP_004656982.1 CDS Runsl_3486 NC_015703.1 4065005 4065655 R COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR001962; KEGG: sli:Slin_0568 asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; SPTR: Asparagine synthase (Glutamine-hydrolyzing); hypothetical protein complement(4065005..4065655) Runella slithyformis DSM 19594 10872023 YP_004656983.1 CDS Runsl_3487 NC_015703.1 4065684 4067618 R PFAM: Asparagine synthase; asparagine synthase complement(4065684..4067618) Runella slithyformis DSM 19594 10872024 YP_004656984.1 CDS Runsl_3488 NC_015703.1 4067647 4067775 D KEGG: dfe:Dfer_5035 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4067647..4067775 Runella slithyformis DSM 19594 10872025 YP_004656985.1 CDS Runsl_3489 NC_015703.1 4067842 4068126 D PFAM: Coenzyme PQQ synthesis protein D (PqqD); KEGG: dfe:Dfer_5036 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4067842..4068126 Runella slithyformis DSM 19594 10872026 YP_004656986.1 CDS Runsl_3490 NC_015703.1 4068098 4068532 D KEGG: sli:Slin_2007 HPr kinase; SPTR: HPr kinase; hypothetical protein 4068098..4068532 Runella slithyformis DSM 19594 10872027 YP_004656987.1 CDS Runsl_3491 NC_015703.1 4068575 4069465 D InterPro IPR014982; KEGG: sli:Slin_1111 GSCFA domain protein; PFAM: GSCFA; SPTR: GSCFA domain protein; HPr kinase 4068575..4069465 Runella slithyformis DSM 19594 10872028 YP_004656988.1 CDS Runsl_3492 NC_015703.1 4069462 4070448 R PFAM: GSCFA family; GSCFA domain-containing protein complement(4069462..4070448) Runella slithyformis DSM 19594 10872029 YP_004656989.1 CDS Runsl_3493 NC_015703.1 4070619 4070720 R KEGG: dfe:Dfer_3779 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4070619..4070720) Runella slithyformis DSM 19594 10872030 YP_004656990.1 CDS Runsl_3494 NC_015703.1 4070988 4072412 D COGs: COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related protein; InterPro IPR001950; KEGG: dfe:Dfer_3941 translation initiation factor SUI1; PFAM: Translation initiation factor SUI1; SPTR: Translation initiation factor SUI1; hypothetical protein 4070988..4072412 Runella slithyformis DSM 19594 10872031 YP_004656991.1 CDS Runsl_3495 NC_015703.1 4072542 4072877 R PFAM: Translation initiation factor SUI1; TIGRFAM: translation initation factor SUI1, , prokaryotic; translation initiation factor SUI1 complement(4072542..4072877) Runella slithyformis DSM 19594 10872032 YP_004656992.1 CDS Runsl_3496 NC_015703.1 4073053 4073406 D KEGG: sli:Slin_3168 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4073053..4073406 Runella slithyformis DSM 19594 10872033 YP_004656993.1 CDS Runsl_3497 NC_015703.1 4073435 4073797 D KEGG: cbg:CbuG_1613 hypothetical protein; SPTR: Hypothetical exported protein; hypothetical protein 4073435..4073797 Runella slithyformis DSM 19594 10872034 YP_004656994.1 CDS Runsl_3498 NC_015703.1 4073891 4074571 D PFAM: Protein of unknown function (DUF2807); COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: sli:Slin_3167 response regulator receiver protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Response regulator receiver protein; hypothetical protein 4073891..4074571 Runella slithyformis DSM 19594 10872035 YP_004656995.1 CDS Runsl_3499 NC_015703.1 4074618 4075757 D PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: ana:alr3189 beta-carotene ketolase; PFAM: Fatty acid desaturase, type 1; SPTR: CrtW; AraC family transcriptional regulator 4074618..4075757 Runella slithyformis DSM 19594 10872036 YP_004656996.1 CDS Runsl_3500 NC_015703.1 4075820 4076545 D PFAM: Fatty acid desaturase; COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: cno:NT01CX_2408 type I restriction-modification system DNA methylase; PFAM: DNA methylase, adenine-specific; SPTR: Type I restriction-modification system DNA methylase; fatty acid desaturase 4075820..4076545 Runella slithyformis DSM 19594 10872037 YP_004656997.1 CDS Runsl_3501 NC_015703.1 4076634 4078712 D PFAM: N-6 DNA Methylase; HsdM N-terminal domain; InterPro IPR000055; KEGG: tmt:Tmath_1863 restriction modification system DNA specificity domain protein; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Restriction modification system DNA specificity domain; N-6 DNA methylase 4076634..4078712 Runella slithyformis DSM 19594 10872038 YP_004656998.1 CDS Runsl_3502 NC_015703.1 4078709 4079368 D PFAM: Type I restriction modification DNA specificity domain; COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated; restriction modification system DNA specificity domain-containing protein 4078709..4079368 Runella slithyformis DSM 19594 10872039 YP_004656999.1 CDS Runsl_3503 NC_015703.1 4079370 4080381 R PFAM: Rhodopirellula transposase; 'Paired box' domain; Prodigal; manually curated; transposase complement(join(4079370..4079915,4079917..4080381)) Runella slithyformis DSM 19594 10872040 YP_004657000.1 CDS Runsl_3506 NC_015703.1 4081764 4082300 D InterPro IPR001387; KEGG: sli:Slin_4822 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family protein; hypothetical protein 4081764..4082300 Runella slithyformis DSM 19594 10872043 YP_004657001.1 CDS Runsl_3507 NC_015703.1 4082305 4082709 D PFAM: Helix-turn-helix; SPTR: uncharacterized protein; helix-turn-helix domain-containing protein 4082305..4082709 Runella slithyformis DSM 19594 10872044 YP_004657002.1 CDS Runsl_3508 NC_015703.1 4082699 4083139 D COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR007409:IPR006935:IPR014001:IPR004473; KEGG: pcr:Pcryo_2363 HsdR family type I site-specific deoxyribonuclease; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; SPTR: HsdR family type I site-specific deoxyribonuclease; TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; hypothetical protein 4082699..4083139 Runella slithyformis DSM 19594 10872045 YP_004657003.1 CDS Runsl_3509 NC_015703.1 4083152 4086367 D PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; KEGG: bpb:bpr_I1711 hypothetical protein; SPTR: uncharacterized protein; HsdR family type I site-specific deoxyribonuclease 4083152..4086367 Runella slithyformis DSM 19594 10872046 YP_004657004.1 CDS Runsl_3510 NC_015703.1 4086354 4087544 D COGs: COG1564 Thiamine pyrophosphokinase; InterPro IPR007371:IPR007373:IPR006282; KEGG: sli:Slin_2799 thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic domain; Thiamin pyrophosphokinase, vitamin B1-binding region; SPTR: Thiamine pyrophosphokinase; TIGRFAM: Thiamin pyrophosphokinase; hypothetical protein 4086354..4087544 Runella slithyformis DSM 19594 10872047 YP_004657005.1 CDS Runsl_3511 NC_015703.1 4087624 4088286 D PFAM: Thiamin pyrophosphokinase, vitamin B1 binding domain; Thiamin pyrophosphokinase, catalytic domain; TIGRFAM: thiamine pyrophosphokinase; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341:IPR013342; KEGG: sli:Slin_0013 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; PRIAM: Chloromuconate cycloisomerase; SPTR: Mandelate racemase/muconate lactonizing protein; thiamine pyrophosphokinase 4087624..4088286 Runella slithyformis DSM 19594 10872048 YP_004657006.1 CDS Runsl_3512 NC_015703.1 4088340 4089446 D PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; KEGG: sli:Slin_3230 hypothetical protein; SPTR: uncharacterized protein; chloromuconate cycloisomerase 4088340..4089446 Runella slithyformis DSM 19594 10872049 YP_004657007.1 CDS Runsl_3513 NC_015703.1 4089465 4090037 R COGs: COG0074 Succinyl-CoA synthetase alpha subunit; InterPro IPR003781:IPR005811:IPR005810; KEGG: sli:Slin_3229 succinyl-CoA synthetase, subunit alpha; PFAM: CoA-binding; ATP-citrate lyase/succinyl-CoA ligase; PRIAM: Succinate--CoA ligase (ADP-forming); SPTR: Succinyl-CoA ligase [ADP-forming] subunit alpha; TIGRFAM: Succinyl-CoA ligase, alpha subunit; hypothetical protein complement(4089465..4090037) Runella slithyformis DSM 19594 10872050 YP_004657008.1 CDS Runsl_3514 NC_015703.1 4090317 4091192 D PFAM: CoA binding domain; CoA-ligase; TIGRFAM: succinyl-CoA synthetase, alpha subunit; KEGG: sli:Slin_3228 hypothetical protein; SPTR: uncharacterized protein; succinyl-CoA synthetase subunit alpha 4090317..4091192 Runella slithyformis DSM 19594 10872051 YP_004657009.1 CDS Runsl_3515 NC_015703.1 4091333 4092460 D COGs: COG1587 Uroporphyrinogen-III synthase; InterPro IPR003754; KEGG: dfe:Dfer_2913 uroporphyrinogen III synthase HEM4; PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; SPTR: Uroporphyrinogen III synthase HEM4; hypothetical protein 4091333..4092460 Runella slithyformis DSM 19594 10872052 YP_004657010.1 CDS Runsl_3516 NC_015703.1 4092492 4093274 D PFAM: Uroporphyrinogen-III synthase HemD; InterPro IPR019861; KEGG: sli:Slin_3226 hypothetical protein; SPTR: membrane protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; uroporphyrinogen III synthase HEM4 4092492..4093274 Runella slithyformis DSM 19594 10872053 YP_004657011.1 CDS Runsl_3517 NC_015703.1 4093438 4094409 D PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein; COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: sli:Slin_3225 hypothetical protein; PFAM: Sulphatase-modifying factor; SPTR: uncharacterized protein; hypothetical protein 4093438..4094409 Runella slithyformis DSM 19594 10872054 YP_004657012.1 CDS Runsl_3518 NC_015703.1 4094671 4095780 D PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: gliding motility-associated lipoprotein GldK; InterPro IPR019852; KEGG: sli:Slin_3224 gliding motility-associated protein GldL; SPTR: Gliding motility-associated protein GldL; TIGRFAM: Gliding motility-associated protein, GldL; sulfatase-modifying factor protein 4094671..4095780 Runella slithyformis DSM 19594 10872055 YP_004657013.1 CDS Runsl_3519 NC_015703.1 4095889 4096692 D TIGRFAM: gliding motility-associated protein GldL; InterPro IPR019859; KEGG: sli:Slin_3223 gliding motility-associated protein GldM; SPTR: Gliding motility-associated protein GldM; TIGRFAM: Gliding motility-associated protein GldM; gliding motility-associated protein GldL 4095889..4096692 Runella slithyformis DSM 19594 10872056 YP_004657014.1 CDS Runsl_3520 NC_015703.1 4096811 4098406 D PFAM: GldM C-terminal domain; GldM N-terminal domain; TIGRFAM: gliding motility-associated protein GldM; InterPro IPR019847; KEGG: sli:Slin_3222 gliding motility associated protein GldN; SPTR: Gliding motility associated protein GldN; TIGRFAM: Gliding motility associated protein GldN; gliding motility-associated protein GldM 4096811..4098406 Runella slithyformis DSM 19594 10872057 YP_004657015.1 CDS Runsl_3521 NC_015703.1 4098487 4099566 D TIGRFAM: gliding motility associated protein GldN; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_1147 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; manually curated; gliding motility associated protein GldN 4098487..4099566 Runella slithyformis DSM 19594 10872058 YP_004657016.1 CDS Runsl_3522 NC_015703.1 4099630 4100640 R PFAM: Glycosyl transferase 2; COGs: COG2003 DNA repair protein; InterPro IPR000445:IPR001405; KEGG: sli:Slin_0523 DNA repair protein RadC; PFAM: DNA repair, RadC-like; Helix-hairpin-helix motif; SPTR: DNA repair protein RadC; TIGRFAM: DNA repair, RadC-like; family 2 glycosyl transferase complement(4099630..4100640) Runella slithyformis DSM 19594 10872059 YP_004657017.1 CDS Runsl_3523 NC_015703.1 4100702 4101406 D PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc; COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: aba:Acid345_3835 amino acid transporter; PFAM: Amino acid permease-associated region; SPTR: Amino acid/polyamine/organocation transporter, APC superfamily; DNA repair protein RadC 4100702..4101406 Runella slithyformis DSM 19594 10872060 YP_004657018.1 CDS Runsl_3524 NC_015703.1 4101459 4102784 D PFAM: Amino acid permease; KEGG: fjo:Fjoh_2177 hypothetical protein; SPTR: uncharacterized protein; amino acid permease 4101459..4102784 Runella slithyformis DSM 19594 10872061 YP_004657019.1 CDS Runsl_3525 NC_015703.1 4102789 4103238 D PFAM: Protein of unknown function (DUF1572); KEGG: dfe:Dfer_2493 twin-arginine translocation pathway signal; SPTR: Twin-arginine translocation pathway signal; hypothetical protein 4102789..4103238 Runella slithyformis DSM 19594 10872062 YP_004657020.1 CDS Runsl_3526 NC_015703.1 4103434 4104117 D COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076:IPR000172; KEGG: dfe:Dfer_2494 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; twin-arginine translocation pathway signal 4103434..4104117 Runella slithyformis DSM 19594 10872063 YP_004657021.1 CDS Runsl_3527 NC_015703.1 4104150 4105865 D PFAM: GMC oxidoreductase; Prodigal; manually curated; glucose-methanol-choline oxidoreductase 4104150..4105865 Runella slithyformis DSM 19594 10872064 YP_004657022.1 CDS Runsl_3529 NC_015703.1 4106754 4107539 R COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_2868 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; hypothetical protein complement(4106754..4107539) Runella slithyformis DSM 19594 10872066 YP_004657023.1 CDS Runsl_3530 NC_015703.1 4107951 4108727 R PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_2867 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; LytTR family two component transcriptional regulator complement(4107951..4108727) Runella slithyformis DSM 19594 10872067 YP_004657024.1 CDS Runsl_3531 NC_015703.1 4108724 4109842 R PFAM: Histidine kinase; COGs: COG0474 Cation transport ATPase; InterPro IPR008250:IPR005834:IPR006068:IPR001757; KEGG: cao:Celal_3035 atpase, p-type (transporting), had superfamily, subfamily IC; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal; PRIAM: Calcium-transporting ATPase; SPTR: ATPase, P-type (Transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; signal transduction histidine kinase complement(4108724..4109842) Runella slithyformis DSM 19594 10872068 YP_004657025.1 CDS Runsl_3532 NC_015703.1 4109974 4112472 R PFAM: E1-E2 ATPase; Cation transporting ATPase, C-terminus; haloacid dehalogenase-like hydrolase; Cation transporter/ATPase, N-terminus; TIGRFAM: plasma-membrane calcium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692; KEGG: sli:Slin_4469 peptidase S45 penicillin amidase; PFAM: Peptidase S45, penicillin amidase; PRIAM: Glutaryl-7-aminocephalosporanic-acid acylase; SPTR: Peptidase S45 penicillin amidase; P-type HAD superfamily ATPase complement(4109974..4112472) Runella slithyformis DSM 19594 10872069 YP_004657026.1 CDS Runsl_3533 NC_015703.1 4112596 4114782 D PFAM: Penicillin amidase; COGs: COG3530 conserved hypothetical protein; KEGG: phe:Phep_0021 hypothetical protein; SPTR: uncharacterized protein; glutaryl-7-aminocephalosporanic-acid acylase 4112596..4114782 Runella slithyformis DSM 19594 10872070 YP_004657027.1 CDS Runsl_3534 NC_015703.1 4114895 4115119 D KEGG: cao:Celal_3797 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4114895..4115119 Runella slithyformis DSM 19594 10872071 YP_004657028.1 CDS Runsl_3535 NC_015703.1 4115128 4115874 D COGs: COG3268 conserved hypothetical protein; InterPro IPR005097; KEGG: cpi:Cpin_5762 saccharopine dehydrogenase; PFAM: Saccharopine dehydrogenase; SPTR: Saccharopine dehydrogenase; hypothetical protein 4115128..4115874 Runella slithyformis DSM 19594 10872072 YP_004657029.1 CDS Runsl_3536 NC_015703.1 4115896 4116945 R PFAM: Saccharopine dehydrogenase; KEGG: zpr:ZPR_3092 hypothetical protein; SPTR: uncharacterized protein; saccharopine dehydrogenase complement(4115896..4116945) Runella slithyformis DSM 19594 10872073 YP_004657030.1 CDS Runsl_3537 NC_015703.1 4117108 4117863 D COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: fps:FP2000 thioredoxin family protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Pyridine nucleotide-disulphide oxidoreductase; hypothetical protein 4117108..4117863 Runella slithyformis DSM 19594 10872074 YP_004657031.1 CDS Runsl_3538 NC_015703.1 4117867 4118262 R PFAM: Rhodanese-like domain; KEGG: wvi:Weevi_0462 hypothetical protein; SPTR: uncharacterized protein; rhodanese-like protein complement(4117867..4118262) Runella slithyformis DSM 19594 10872075 YP_004657032.1 CDS Runsl_3539 NC_015703.1 4118274 4118834 R PFAM: Protein of unknown function (DUF3365); KEGG: psn:Pedsa_1895 protein tyrosine phosphatase; SPTR: Low molecular weight phosphatase; hypothetical protein complement(4118274..4118834) Runella slithyformis DSM 19594 10872076 YP_004657033.1 CDS Runsl_3540 NC_015703.1 4119189 4119806 R PFAM: Low molecular weight phosphotyrosine protein phosphatase; COGs: COG0798 Arsenite efflux pump ACR3 and related permease; InterPro IPR002657:IPR004706; KEGG: dfe:Dfer_0846 arsenical-resistance protein; PFAM: Bile acid:sodium symporter; SPTR: Arsenical-resistance protein; TIGRFAM: Arsenical-resistance protein ACR3; protein tyrosine phosphatase complement(4119189..4119806) Runella slithyformis DSM 19594 10872077 YP_004657034.1 CDS Runsl_3541 NC_015703.1 4119803 4120840 R PFAM: Sodium Bile acid symporter family; TIGRFAM: arsenical-resistance protein; InterPro IPR001845; KEGG: lbf:LBF_2770 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family; arsenical-resistance protein complement(4119803..4120840) Runella slithyformis DSM 19594 10872078 YP_004657035.1 CDS Runsl_3542 NC_015703.1 4120885 4121226 R PFAM: Bacterial regulatory protein, arsR family; KEGG: dfe:Dfer_1543 hypothetical protein; SPTR: uncharacterized protein; regulatory protein ArsR complement(4120885..4121226) Runella slithyformis DSM 19594 10872079 YP_004657036.1 CDS Runsl_3543 NC_015703.1 4121380 4122150 R hypothetical protein complement(4121380..4122150) Runella slithyformis DSM 19594 10872080 YP_004657037.1 CDS Runsl_3544 NC_015703.1 4122183 4122278 D KEGG: bth:BT_3435 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4122183..4122278 Runella slithyformis DSM 19594 10872081 YP_004657038.1 CDS Runsl_3545 NC_015703.1 4122314 4122607 R KEGG: fbc:FB2170_17341 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4122314..4122607) Runella slithyformis DSM 19594 10872082 YP_004657039.1 CDS Runsl_3546 NC_015703.1 4122743 4122949 R PFAM: Protein of unknown function (DUF2892); COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR013766:IPR005746; KEGG: shg:Sph21_3201 thioredoxin; PFAM: Thioredoxin domain; SPTR: Thioredoxin C-2; TIGRFAM: Thioredoxin; hypothetical protein complement(4122743..4122949) Runella slithyformis DSM 19594 10872083 YP_004657040.1 CDS Runsl_3547 NC_015703.1 4123207 4123524 R PFAM: Thioredoxin; TIGRFAM: thioredoxin; KEGG: sli:Slin_6448 hypothetical protein; SPTR: uncharacterized protein; thioredoxin complement(4123207..4123524) Runella slithyformis DSM 19594 10872084 YP_004657041.1 CDS Runsl_3548 NC_015703.1 4123599 4123802 R KEGG: sli:Slin_6447 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4123599..4123802) Runella slithyformis DSM 19594 10872085 YP_004657042.1 CDS Runsl_3549 NC_015703.1 4123786 4124067 R COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: cly:Celly_0541 rhodanese-like protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: uncharacterized protein; hypothetical protein complement(4123786..4124067) Runella slithyformis DSM 19594 10872086 YP_004657043.1 CDS Runsl_3550 NC_015703.1 4124067 4124393 R PFAM: Rhodanese-like domain; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: sli:Slin_4055 histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SPTR: Histidine kinase; rhodanese-like protein complement(4124067..4124393) Runella slithyformis DSM 19594 10872087 YP_004657044.1 CDS Runsl_3551 NC_015703.1 4124476 4125843 R PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: dfe:Dfer_2743 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family; integral membrane sensor signal transduction histidine kinase complement(4124476..4125843) Runella slithyformis DSM 19594 10872088 YP_004657045.1 CDS Runsl_3552 NC_015703.1 4125840 4126544 R PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_4056 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; winged helix family two component transcriptional regulator complement(4125840..4126544) Runella slithyformis DSM 19594 10872089 YP_004657046.1 CDS Runsl_3553 NC_015703.1 4126679 4127926 D PFAM: Outer membrane efflux protein; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_2746 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; outer membrane efflux protein 4126679..4127926 Runella slithyformis DSM 19594 10872090 YP_004657047.1 CDS Runsl_3554 NC_015703.1 4127928 4129013 D PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG3696 silver efflux pump; InterPro IPR001036:IPR004763; KEGG: dfe:Dfer_2747 heavy metal efflux pump, CzcA family; PFAM: Acriflavin resistance protein; SPTR: Heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; RND family efflux transporter MFP subunit 4127928..4129013 Runella slithyformis DSM 19594 10872091 YP_004657048.1 CDS Runsl_3555 NC_015703.1 4129080 4132193 D PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); InterPro IPR001440:IPR019734; KEGG: sli:Slin_4799 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; CzcA family heavy metal efflux pump 4129080..4132193 Runella slithyformis DSM 19594 10872092 YP_004657049.1 CDS Runsl_3556 NC_015703.1 4132278 4133969 R KEGG: sli:Slin_4797 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4132278..4133969) Runella slithyformis DSM 19594 10872093 YP_004657050.1 CDS Runsl_3557 NC_015703.1 4134017 4134937 R COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: sli:Slin_1850 histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SPTR: Histidine kinase; hypothetical protein complement(4134017..4134937) Runella slithyformis DSM 19594 10872094 YP_004657051.1 CDS Runsl_3558 NC_015703.1 4135081 4136463 R PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: dfe:Dfer_2743 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family; integral membrane sensor signal transduction histidine kinase complement(4135081..4136463) Runella slithyformis DSM 19594 10872095 YP_004657052.1 CDS Runsl_3559 NC_015703.1 4136467 4137159 R PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: fba:FIC_01253 UspA; PFAM: UspA; SPTR: UspA; winged helix family two component transcriptional regulator complement(4136467..4137159) Runella slithyformis DSM 19594 10872096 YP_004657053.1 CDS Runsl_3560 NC_015703.1 4137300 4138211 R PFAM: Universal stress protein family; KEGG: sli:Slin_0579 hypothetical protein; SPTR: uncharacterized protein; UspA domain-containing protein complement(4137300..4138211) Runella slithyformis DSM 19594 10872097 YP_004657054.1 CDS Runsl_3561 NC_015703.1 4138559 4138921 R COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: lby:Lbys_3423 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; hypothetical protein complement(4138559..4138921) Runella slithyformis DSM 19594 10872098 YP_004657055.1 CDS Runsl_3562 NC_015703.1 4139363 4140235 R PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: cbh:CLC_0364 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: uncharacterized protein; AraC family transcriptional regulator complement(4139363..4140235) Runella slithyformis DSM 19594 10872099 YP_004657056.1 CDS Runsl_3563 NC_015703.1 4140670 4141506 D COGs: COG0353 Recombinational DNA repair protein (RecF pathway); HAMAP: Recombination protein recR; InterPro IPR015967:IPR006171:IPR006154:IPR000093; KEGG: sli:Slin_1600 recombination protein RecR; SMART: Toprim domain, subgroup; SPTR: Recombination protein recR; TIGRFAM: RecR protein; AraC family transcriptional regulator 4140670..4141506 Runella slithyformis DSM 19594 10872100 YP_004657057.1 CDS Runsl_3564 NC_015703.1 4141585 4142190 D PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR; KEGG: sli:Slin_0442 anti-FecI sigma factor, FecR; SPTR: Anti-FecI sigma factor, FecR; Recombination protein recR 4141585..4142190 Runella slithyformis DSM 19594 10872101 YP_004657058.1 CDS Runsl_3565 NC_015703.1 4142344 4142721 D InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_5672 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; anti-FecI sigma factor FecR 4142344..4142721 Runella slithyformis DSM 19594 10872102 YP_004657059.1 CDS Runsl_3566 NC_015703.1 4143040 4146156 D PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_5673 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 4143040..4146156 Runella slithyformis DSM 19594 10872103 YP_004657060.1 CDS Runsl_3567 NC_015703.1 4146170 4147852 D PFAM: SusD family; COGs: COG1162 GTPase; HAMAP: ribosome biogenesis GTPase RsgA; InterPro IPR004881; KEGG: dfe:Dfer_3198 ribosome-associated GTPase; PFAM: GTPase EngC; SPTR: ribosome biogenesis GTPase RsgA 2; TIGRFAM: GTPase EngC; RagB/SusD domain-containing protein 4146170..4147852 Runella slithyformis DSM 19594 10872104 YP_004657061.1 CDS Runsl_3568 NC_015703.1 4147950 4148972 R PFAM: Protein of unknown function, DUF258; TIGRFAM: ribosome small subunit-dependent GTPase A; COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR002658; KEGG: sli:Slin_2803 iron-containing alcohol dehydrogenase; PFAM: 3-dehydroquinate synthase AroB; SPTR: Iron-containing alcohol dehydrogenase; ribosome biogenesis GTPase RsgA complement(4147950..4148972) Runella slithyformis DSM 19594 10872105 YP_004657062.1 CDS Runsl_3569 NC_015703.1 4148974 4150053 R PFAM: Iron-containing alcohol dehydrogenase; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: sli:Slin_2804 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: Glutamine--scyllo-inositol transaminase; 3-dehydroquinate synthase complement(4148974..4150053) Runella slithyformis DSM 19594 10872106 YP_004657063.1 CDS Runsl_3570 NC_015703.1 4150100 4151308 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130; KEGG: sli:Slin_5486 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; SPTR: Peptidyl-prolyl cis-trans isomerase cyclophilin type; glutamine--scyllo-inositol transaminase complement(4150100..4151308) Runella slithyformis DSM 19594 10872107 YP_004657064.1 CDS Runsl_3571 NC_015703.1 4151636 4152223 R PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sli:Slin_6756 efflux transporter, RND family, MFP subunit; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(4151636..4152223) Runella slithyformis DSM 19594 10872108 YP_004657065.1 CDS Runsl_3572 NC_015703.1 4152333 4153454 R TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG3696 silver efflux pump; InterPro IPR001036:IPR003423:IPR004763; KEGG: chu:CHU_1512 cation efflux protein; PFAM: Acriflavin resistance protein; Outer membrane efflux protein; SPTR: Cation efflux system protein CzcA; TIGRFAM: Heavy metal efflux pump CzcA; RND family efflux transporter MFP subunit complement(4152333..4153454) Runella slithyformis DSM 19594 10872109 YP_004657066.1 CDS Runsl_3573 NC_015703.1 4153555 4157865 R PFAM: Outer membrane efflux protein; AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); CzcA family heavy metal efflux pump complement(4153555..4157865) Runella slithyformis DSM 19594 10872110 YP_004657067.1 CDS Runsl_3574 NC_015703.1 4158001 4158141 D KEGG: sli:Slin_3178 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4158001..4158141 Runella slithyformis DSM 19594 10872111 YP_004657068.1 CDS Runsl_3575 NC_015703.1 4158110 4158490 R COGs: COG1918 Fe2+ transport system protein A; InterPro IPR007167; KEGG: sli:Slin_1450 FeoA family protein; PFAM: Ferrous iron transporter, FeoA subunit; SPTR: FeoA family protein; hypothetical protein complement(4158110..4158490) Runella slithyformis DSM 19594 10872112 YP_004657069.1 CDS Runsl_3576 NC_015703.1 4158756 4159016 D PFAM: FeoA domain; COGs: COG0370 Fe2+ transport system protein B; InterProIPR002917:IPR011619:IPR011642:IPR011640:IPR 005225:IPR003373; KEGG: sli:Slin_1451 ferrous iron transporter B; PFAM: Ferrous iron transport protein B, N-terminal; GTP-binding protein, HSR1-related; Nucleoside recognition; Ferrous iron transport protein B, C-terminal; SPTR: Ferrous iron transport protein B; TIGRFAM: Ferrous iron transport protein B; Small GTP-binding protein; FeoA family protein 4158756..4159016 Runella slithyformis DSM 19594 10872113 YP_004657070.1 CDS Runsl_3577 NC_015703.1 4159023 4161152 D PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: sli:Slin_2483 histone deacetylase; PFAM: Histone deacetylase superfamily; SPTR: Histone deacetylase; ferrous iron transport protein B 4159023..4161152 Runella slithyformis DSM 19594 10872114 YP_004657071.1 CDS Runsl_3578 NC_015703.1 4161239 4162156 R PFAM: Histone deacetylase domain; KEGG: dfe:Dfer_2764 hypothetical protein; SPTR: uncharacterized protein; histone deacetylase superfamily protein complement(4161239..4162156) Runella slithyformis DSM 19594 10872115 YP_004657072.1 CDS Runsl_3579 NC_015703.1 4162228 4162833 D KEGG: dfe:Dfer_2765 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4162228..4162833 Runella slithyformis DSM 19594 10872116 YP_004657073.1 CDS Runsl_3580 NC_015703.1 4162892 4163569 D COGs: COG1765 redox protein regulator of disulfide bond formation; InterPro IPR003718; KEGG: dfe:Dfer_5001 OsmC family protein; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: OsmC family protein; hypothetical protein 4162892..4163569 Runella slithyformis DSM 19594 10872117 YP_004657074.1 CDS Runsl_3581 NC_015703.1 4163636 4164058 R PFAM: OsmC-like protein; KEGG: sli:Slin_1014 hypothetical protein; SPTR: uncharacterized protein; OsmC family protein complement(4163636..4164058) Runella slithyformis DSM 19594 10872118 YP_004657075.1 CDS Runsl_3582 NC_015703.1 4164099 4164464 R PFAM: Domain of unknown function (DUF3471); COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130; KEGG: lby:Lbys_2390 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; SPTR: Peptidyl-prolyl cis-trans isomerase; hypothetical protein complement(4164099..4164464) Runella slithyformis DSM 19594 10872119 YP_004657076.1 CDS Runsl_3583 NC_015703.1 4164492 4164935 R PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR002937; KEGG: sli:Slin_0654 amine oxidase; PFAM: Amine oxidase; SPTR: Amine oxidase; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(4164492..4164935) Runella slithyformis DSM 19594 10872120 YP_004657077.1 CDS Runsl_3584 NC_015703.1 4165074 4166357 D PFAM: Flavin containing amine oxidoreductase; COGs: COG3380 NAD/FAD-dependent oxidoreductase; InterPro IPR002937; KEGG: sli:Slin_4691 FAD dependent oxidoreductase; PFAM: Amine oxidase; SPTR: FAD dependent oxidoreductase; manually curated; amine oxidase 4165074..4166357 Runella slithyformis DSM 19594 10872121 YP_004657078.1 CDS Runsl_3585 NC_015703.1 4166509 4167471 R PFAM: Flavin containing amine oxidoreductase; COGs: COG0104 Adenylosuccinate synthase; HAMAP: Adenylosuccinate synthetase; InterPro IPR001114; KEGG: dfe:Dfer_4579 adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; PRIAM: Adenylosuccinate synthase; SMART: Adenylosuccinate synthetase; SPTR: Adenylosuccinate synthetase 2; TIGRFAM: Adenylosuccinate synthetase; amine oxidase complement(4166509..4167471) Runella slithyformis DSM 19594 10872122 YP_004657079.1 CDS Runsl_3586 NC_015703.1 4167766 4169055 R PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: sli:Slin_1610 Fur family ferric uptake regulator; PFAM: Ferric-uptake regulator; SPTR: Ferric uptake regulator, Fur family; adenylosuccinate synthetase complement(4167766..4169055) Runella slithyformis DSM 19594 10872123 YP_004657080.1 CDS Runsl_3587 NC_015703.1 4169059 4169559 R PFAM: Ferric uptake regulator family; COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterProIPR006674:IPR007685:IPR004095:IPR002912:IPR 003607:IPR004811; KEGG: sli:Slin_1611 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD region, subdomain; TGS; Amino acid-binding ACT; PRIAM: GTP diphosphokinase; SMART: Metal-dependent phosphohydrolase, HD region; SPTR: (P)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT protein; Fur family ferric uptake regulator complement(4169059..4169559) Runella slithyformis DSM 19594 10872124 YP_004657081.1 CDS Runsl_3588 NC_015703.1 4169660 4171921 R PFAM: HD domain; ACT domain; TGS domain; Region found in RelA / SpoT proteins; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family; (p)ppGpp synthetase I SpoT/RelA complement(4169660..4171921) Runella slithyformis DSM 19594 10872125 YP_004657082.1 CDS Runsl_3589 NC_015703.1 4172406 4173746 D PFAM: Bacterial trigger factor protein (TF); TIGRFAM: trigger factor; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: ppn:Palpr_0445 transcriptional regulator, crp/fnr family; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; trigger factor 4172406..4173746 Runella slithyformis DSM 19594 10872127 YP_004657083.1 CDS Runsl_3590 NC_015703.1 4173840 4174409 D PFAM: Cyclic nucleotide-binding domain; Crp/Fnr family transcriptional regulator 4173840..4174409 Runella slithyformis DSM 19594 10872128 YP_004657084.1 CDS Runsl_3591 NC_015703.1 4174496 4175506 D hypothetical protein 4174496..4175506 Runella slithyformis DSM 19594 10872129 YP_004657085.1 CDS Runsl_3592 NC_015703.1 4175597 4175974 D KEGG: sli:Slin_2034 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4175597..4175974 Runella slithyformis DSM 19594 10872130 YP_004657086.1 CDS Runsl_3593 NC_015703.1 4175991 4176413 D Prodigal; manually curated; hypothetical protein 4175991..4176413 Runella slithyformis DSM 19594 10872131 YP_004657087.1 CDS Runsl_3595 NC_015703.1 4177425 4178039 R PFAM: O-methyltransferase; COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: caa:Caka_0891 esterase; PFAM: esterase; SPTR: esterase; type 11 methyltransferase complement(4177425..4178039) Runella slithyformis DSM 19594 10872133 YP_004657088.1 CDS Runsl_3596 NC_015703.1 4178121 4178912 R PFAM: esterase; COGs: COG1062 Zn-dependent alcohol dehydrogenase class III; InterPro IPR013154:IPR013149; KEGG: cao:Celal_3017 alcohol dehydrogenase GroES domain protein; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; SPTR: MS123, alcohol dehydrogenase; esterase complement(4178121..4178912) Runella slithyformis DSM 19594 10872134 YP_004657089.1 CDS Runsl_3597 NC_015703.1 4178941 4180047 R PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; KEGG: mtt:Ftrac_1988 hypothetical protein; SPTR: Lipoprotein; molecular chaperone GroES complement(4178941..4180047) Runella slithyformis DSM 19594 10872135 YP_004657090.1 CDS Runsl_3598 NC_015703.1 4180127 4180909 R COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: dfe:Dfer_4990 UspA domain protein; PFAM: UspA; SPTR: UspA domain protein; hypothetical protein complement(4180127..4180909) Runella slithyformis DSM 19594 10872136 YP_004657091.1 CDS Runsl_3599 NC_015703.1 4181050 4181892 D PFAM: Universal stress protein family; Prodigal; manually curated; UspA domain-containing protein 4181050..4181892 Runella slithyformis DSM 19594 10872137 YP_004657092.1 CDS Runsl_3601 NC_015703.1 4183235 4185079 R PFAM: BlaR1 peptidase M56; COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: sli:Slin_5968 CopY family transcriptional regulator; PFAM: Penicillinase repressor; SPTR: Transcriptional repressor, CopY family; peptidase M56 BlaR1 complement(4183235..4185079) Runella slithyformis DSM 19594 10872139 YP_004657093.1 CDS Runsl_3602 NC_015703.1 4185193 4185552 R PFAM: Penicillinase repressor; COGs: COG0412 Dienelactone hydrolase; InterPro IPR002925; KEGG: sli:Slin_5500 dienelactone hydrolase; PFAM: Dienelactone hydrolase; SPTR: Dienelactone hydrolase; CopY family transcriptional repressor complement(4185193..4185552) Runella slithyformis DSM 19594 10872140 YP_004657094.1 CDS Runsl_3603 NC_015703.1 4185590 4186579 D PFAM: Dienelactone hydrolase; COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component; InterPro IPR003439:IPR003593:IPR010230; KEGG: dfe:Dfer_5778 FeS assembly ATPase SufC; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: FeS assembly ATPase SufC; TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; dienelactone hydrolase 4185590..4186579 Runella slithyformis DSM 19594 10872141 YP_004657095.1 CDS Runsl_3604 NC_015703.1 4186944 4187699 D PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC; COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825:IPR011542; KEGG: sli:Slin_0174 FeS assembly protein SufD; PFAM: SUF system FeS cluster assembly, SufBD; SPTR: FeS assembly protein SufD; TIGRFAM: SUF system FeS cluster assembly, SufD; FeS assembly ATPase SufC 4186944..4187699 Runella slithyformis DSM 19594 10872142 YP_004657096.1 CDS Runsl_3605 NC_015703.1 4187776 4189095 D PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD; KEGG: geb:GM18_2404 HEPN domain-containing protein; SPTR: HEPN domain protein; FeS assembly protein SufD 4187776..4189095 Runella slithyformis DSM 19594 10872143 YP_004657097.1 CDS Runsl_3606 NC_015703.1 4189113 4189571 D HEPN domain-containing protein 4189113..4189571 Runella slithyformis DSM 19594 10872144 YP_004657098.1 CDS Runsl_3607 NC_015703.1 4189553 4189858 D COGs: COG1052 Lactate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140; KEGG: pmx:PERMA_1233 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; PRIAM: Phosphoglycerate dehydrogenase; SPTR: Glycerate dehydrogenase (NADH-dependent hydroxypyruvatereductase) (Hpr) (Gdh) (Hydroxypyruvate dehydrogenase) (Glyoxylatereductase) (Hpr-a); hypothetical protein 4189553..4189858 Runella slithyformis DSM 19594 10872145 YP_004657099.1 CDS Runsl_3608 NC_015703.1 4189977 4190912 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; KEGG: dfe:Dfer_4970 hypothetical protein; SPTR: uncharacterized protein; phosphoglycerate dehydrogenase 4189977..4190912 Runella slithyformis DSM 19594 10872146 YP_004657100.1 CDS Runsl_3609 NC_015703.1 4190962 4191336 R hypothetical protein complement(4190962..4191336) Runella slithyformis DSM 19594 10872147 YP_004657101.1 CDS Runsl_3610 NC_015703.1 4191583 4192017 R COGs: COG1554 Trehalose and maltose hydrolase (possible phosphorylase); InterPro IPR005196:IPR005195:IPR005194; KEGG: dfe:Dfer_2756 maltose phosphorylase; PFAM: Glycoside hydrolase 65, central catalytic; Glycoside hydrolase 65, N-terminal; Glycoside hydrolase, family 65, C-terminal; PRIAM: Kojibiose phosphorylase; SPTR: Kojibiose phosphorylase; hypothetical protein complement(4191583..4192017) Runella slithyformis DSM 19594 10872148 YP_004657102.1 CDS Runsl_3611 NC_015703.1 4192788 4195124 D PFAM: Glycosyl hydrolase 65, C-terminal domain; Glycosyl hydrolase 65, N-terminal domain; Glycosyl hydrolase 65 central catalytic domain; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: pru:PRU_2908 group 2 family glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase, group 2 family; Kojibiose phosphorylase 4192788..4195124 Runella slithyformis DSM 19594 10872149 YP_004657103.1 CDS Runsl_3612 NC_015703.1 4195314 4196213 D PFAM: Glycosyl transferase 2; COGs: COG0657 Esterase/lipase; KEGG: sli:Slin_4918 esterase/lipase precursor; SPTR: esterase/lipase; family 2 glycosyl transferase 4195314..4196213 Runella slithyformis DSM 19594 10872150 YP_004657104.1 CDS Runsl_3613 NC_015703.1 4196241 4197191 R PFAM: Prolyl oligopeptidase; COGs: COG3751 proline hydroxylase; InterPro IPR005123:IPR006620; KEGG: sli:Slin_4910 2OG-Fe(II) oxygenase; PFAM: Oxoglutarate/iron-dependent oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; SPTR: 2OG-Fe(II) oxygenase; manually curated; esterase complement(4196241..4197191) Runella slithyformis DSM 19594 10872151 YP_004657105.1 CDS Runsl_3614 NC_015703.1 4197288 4197926 R COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: cpi:Cpin_7134 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; 2OG-Fe(II) oxygenase complement(4197288..4197926) Runella slithyformis DSM 19594 10872152 YP_004657106.1 CDS Runsl_3615 NC_015703.1 4198143 4198670 D COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; KEGG: dfe:Dfer_1067 peptidylprolyl isomerase (FKBP-type peptidyl-prolyl cis-trans isomerase); SPTR: Peptidyl-prolyl cis-trans isomerase; N-acetyltransferase GCN5 4198143..4198670 Runella slithyformis DSM 19594 10872153 YP_004657107.1 CDS Runsl_3616 NC_015703.1 4198715 4199227 D PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; COGs: COG2957 Peptidylarginine deiminase; InterPro IPR007466; KEGG: sli:Slin_0810 agmatine deiminase; PFAM: Peptidyl-arginine deiminase, Porphyromonas-type; PRIAM: Agmatine deiminase; SPTR: Agmatine deiminase; FKBP-type peptidylprolyl isomerase 4198715..4199227 Runella slithyformis DSM 19594 10872154 YP_004657108.1 CDS Runsl_3617 NC_015703.1 4199381 4200505 R PFAM: Porphyromonas-type peptidyl-arginine deiminase; InterPro IPR014865; KEGG: zpr:ZPR_1806 hypothetical protein; SPTR: uncharacterized protein; Agmatine deiminase complement(4199381..4200505) Runella slithyformis DSM 19594 10872155 YP_004657109.1 CDS Runsl_3618 NC_015703.1 4200567 4201103 D PFAM: DsrE/DsrF-like family; hypothetical protein 4200567..4201103 Runella slithyformis DSM 19594 10872156 YP_004657110.1 CDS Runsl_3619 NC_015703.1 4201554 4201796 D Prodigal; manually curated; hypothetical protein 4201554..4201796 Runella slithyformis DSM 19594 10872157 YP_004657111.1 CDS Runsl_3621 NC_015703.1 4202287 4203405 D TIGRFAM: DNA polymerase III, delta' subunit; InterPro IPR011519; KEGG: dfe:Dfer_4738 ASPIC/UnbV domain protein; PFAM: ASPIC/UnbV; SPTR: ASPIC/UnbV domain protein; DNA polymerase III gamma/tau subunits-like protein 4202287..4203405 Runella slithyformis DSM 19594 10872159 YP_004657112.1 CDS Runsl_3622 NC_015703.1 4203466 4206828 R PFAM: ASPIC and UnbV; KEGG: sli:Slin_0911 hypothetical protein; SPTR: uncharacterized protein; ASPIC/UnbV domain-containing protein complement(4203466..4206828) Runella slithyformis DSM 19594 10872160 YP_004657113.1 CDS Runsl_3623 NC_015703.1 4206950 4207657 R InterPro IPR012944; KEGG: lby:Lbys_2780 ragb/susd domain protein; PFAM: RagB/SusD; SPTR: outer membrane protein probably involved in nutrient binding; hypothetical protein complement(4206950..4207657) Runella slithyformis DSM 19594 10872161 YP_004657114.1 CDS Runsl_3624 NC_015703.1 4207821 4209680 R PFAM: SusD family; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: lby:Lbys_2779 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: Membrane protein; RagB/SusD domain-containing protein complement(4207821..4209680) Runella slithyformis DSM 19594 10872162 YP_004657115.1 CDS Runsl_3625 NC_015703.1 4209699 4212815 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG4067 conserved hypothetical protein; InterPro IPR008503; KEGG: sli:Slin_6088 hypothetical protein; PFAM: Protein of unknown function DUF785; SPTR: uncharacterized protein; TonB-dependent receptor plug complement(4209699..4212815) Runella slithyformis DSM 19594 10872163 YP_004657116.1 CDS Runsl_3626 NC_015703.1 4213006 4213446 D PFAM: Protein of unknown function (DUF785); COGs: COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); InterPro IPR013651:IPR004666; KEGG: dfe:Dfer_3274 alpha-L-glutamate ligase, RimK family; PFAM: ATP-grasp fold, RimK-type; SPTR: Alpha-L-glutamate ligase, RimK family; TIGRFAM: S6 modification enzyme RimK; hypothetical protein 4213006..4213446 Runella slithyformis DSM 19594 10872164 YP_004657117.1 CDS Runsl_3627 NC_015703.1 4213581 4214483 D PFAM: RimK-like ATP-grasp domain; TIGRFAM: alpha-L-glutamate ligases, RimK family; COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: dfe:Dfer_5114 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; RimK family alpha-L-glutamate ligase 4213581..4214483 Runella slithyformis DSM 19594 10872165 YP_004657118.1 CDS Runsl_3628 NC_015703.1 4214603 4215310 D PFAM: NUDIX domain; NUDIX hydrolase 4214603..4215310 Runella slithyformis DSM 19594 10872166 YP_004657119.1 CDS Runsl_3629 NC_015703.1 4215981 4216091 D InterPro IPR012910:IPR000531; KEGG: sli:Slin_3031 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein 4215981..4216091 Runella slithyformis DSM 19594 10872167 YP_004657120.1 CDS Runsl_3630 NC_015703.1 4216193 4219264 D PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: sli:Slin_3030 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 4216193..4219264 Runella slithyformis DSM 19594 10872168 YP_004657121.1 CDS Runsl_3631 NC_015703.1 4219318 4220850 D InterPro IPR013517:IPR011519; KEGG: sli:Slin_3029 ASPIC/UnbV domain protein; PFAM: ASPIC/UnbV; FG-GAP; SPTR: ASPIC/UnbV domain protein; hypothetical protein 4219318..4220850 Runella slithyformis DSM 19594 10872169 YP_004657122.1 CDS Runsl_3632 NC_015703.1 4220949 4224215 D PFAM: ASPIC and UnbV; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR013096:IPR000005:IPR018060; KEGG: sli:Slin_4043 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; Cupin 2, conserved barrel; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; ASPIC/UnbV domain-containing protein 4220949..4224215 Runella slithyformis DSM 19594 10872170 YP_004657123.1 CDS Runsl_3633 NC_015703.1 4224187 4225101 R PFAM: Cupin domain; InterPro IPR012307; KEGG: pjd:Pjdr2_3667 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: uncharacterized protein; AraC family transcriptional regulator complement(4224187..4225101) Runella slithyformis DSM 19594 10872171 YP_004657124.1 CDS Runsl_3634 NC_015703.1 4225247 4226020 D PFAM: Xylose isomerase-like TIM barrel; COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: ttr:Tter_0136 WD40 domain protein beta propeller; PFAM: WD40-like Beta Propeller; SPTR: WD40-like Beta Propeller; xylose isomerase domain-containing protein 4225247..4226020 Runella slithyformis DSM 19594 10872172 YP_004657125.1 CDS Runsl_3635 NC_015703.1 4226028 4226963 D PFAM: WD40-like Beta Propeller Repeat; InterPro IPR004455; KEGG: smd:Smed_3771 NADP oxidoreductase coenzyme F420-dependent; PFAM: NADP oxidoreductase, coenzyme F420-dependent; SPTR: NADP oxidoreductase coenzyme F420-dependent; hypothetical protein 4226028..4226963 Runella slithyformis DSM 19594 10872173 YP_004657126.1 CDS Runsl_3636 NC_015703.1 4226985 4227824 D PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase; KEGG: rrs:RoseRS_1804 hypothetical protein; SPTR: uncharacterized protein; coenzyme F420-dependent NADP oxidoreductase 4226985..4227824 Runella slithyformis DSM 19594 10872174 YP_004657127.1 CDS Runsl_3637 NC_015703.1 4227846 4229294 D KEGG: sli:Slin_6336 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4227846..4229294 Runella slithyformis DSM 19594 10872175 YP_004657128.1 CDS Runsl_3638 NC_015703.1 4229319 4230710 D COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: ttr:Tter_1997 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein; hypothetical protein 4229319..4230710 Runella slithyformis DSM 19594 10872176 YP_004657129.1 CDS Runsl_3639 NC_015703.1 4230707 4231738 D PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: dtu:Dtur_0411 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Monosaccharide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; oxidoreductase domain-containing protein 4230707..4231738 Runella slithyformis DSM 19594 10872177 YP_004657130.1 CDS Runsl_3640 NC_015703.1 4231726 4233210 D PFAM: ABC transporter; COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: aac:Aaci_2903 inner-membrane translocator; PFAM: Bacterial inner-membrane translocator; SPTR: ABC transporter, membrane spanning protein (Ribose); monosaccharide-transporting ATPase 4231726..4233210 Runella slithyformis DSM 19594 10872178 YP_004657131.1 CDS Runsl_3641 NC_015703.1 4233370 4235358 D PFAM: family; Branched-chain amino acid transport system / permease component; ABC transporter permease 4233370..4235358 Runella slithyformis DSM 19594 10872179 YP_004657132.1 CDS Runsl_3642 NC_015703.1 4235224 4235514 R COGs: COG4124 Beta-mannanase; InterPro IPR000805; KEGG: lby:Lbys_3427 mannan endo-1,4-beta-mannosidase; PFAM: Glycoside hydrolase, family 26; PRIAM: Mannan endo-1,4-beta-mannosidase; SPTR: Mannan endo-1,4-beta-mannosidase; hypothetical protein complement(4235224..4235514) Runella slithyformis DSM 19594 10872180 YP_004657133.1 CDS Runsl_3643 NC_015703.1 4235595 4236713 D PFAM: Glycosyl hydrolase 26; COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: lby:Lbys_3428 na+/solute symporter; PFAM: Sodium/solute symporter; SPTR: Na+/solute symporter; mannan endo-1,4-beta-mannosidase 4235595..4236713 Runella slithyformis DSM 19594 10872181 YP_004657134.1 CDS Runsl_3644 NC_015703.1 4236749 4238578 D PFAM: Sodium:solute symporter family; COGs: COG2152 glycosylase; InterPro IPR007184; KEGG: psn:Pedsa_2973 glycosidase related protein; PFAM: Glycosidase, PH1107-related; SPTR: uncharacterized protein; Na+/solute symporter 4236749..4238578 Runella slithyformis DSM 19594 10872182 YP_004657135.1 CDS Runsl_3645 NC_015703.1 4238646 4239833 D PFAM: Domain of unknown function (DUF377); COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: sli:Slin_1327 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; glycosidase-like protein 4238646..4239833 Runella slithyformis DSM 19594 10872183 YP_004657136.1 CDS Runsl_3646 NC_015703.1 4239881 4240552 R PFAM: Protein of unknown function (DUF820); COGs: COG2942 N-acyl-D-glucosamine 2-epimerase; InterPro IPR010819; KEGG: phe:Phep_3983 N-acylglucosamine 2-epimerase; PFAM: N-acylglucosamine 2-epimerase; SPTR: N-acylglucosamine 2-epimerase; hypothetical protein complement(4239881..4240552) Runella slithyformis DSM 19594 10872184 YP_004657137.1 CDS Runsl_3647 NC_015703.1 4240610 4241794 D PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); COGs: COG2730 Endoglucanase; InterPro IPR001547; KEGG: rmr:Rmar_0025 glycoside hydrolase 5; PFAM: Glycoside hydrolase, family 5; SPTR: Glycoside hydrolase 5; N-acylglucosamine 2-epimerase 4240610..4241794 Runella slithyformis DSM 19594 10872185 YP_004657138.1 CDS Runsl_3648 NC_015703.1 4241807 4242820 D PFAM: Cellulase (glycosyl hydrolase 5); InterPro IPR005181; KEGG: dfe:Dfer_0312 protein of unknown function DUF303 acetylesterase PFAM: Protein of unknown function DUF303, acetylesterase SPTR: uncharacterized protein; glycoside hydrolase 4241807..4242820 Runella slithyformis DSM 19594 10872186 YP_004657139.1 CDS Runsl_3649 NC_015703.1 4242906 4244861 D PFAM: Domain of unknown function (DUF303); COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: lby:Lbys_3530 aldo/keto reductase; PFAM: Aldo/keto reductase; SPTR: Aldo/keto reductase; hypothetical protein 4242906..4244861 Runella slithyformis DSM 19594 10872187 YP_004657140.1 CDS Runsl_3650 NC_015703.1 4245033 4246022 D PFAM: Aldo/keto reductase; COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: chu:CHU_1199 mechanosensitive ion channel component; PFAM: Mechanosensitive ion channel MscS; SPTR: Mechanosensitive ion channel component; aldo/keto reductase 4245033..4246022 Runella slithyformis DSM 19594 10872188 YP_004657141.1 CDS Runsl_3651 NC_015703.1 4246333 4247526 D PFAM: Mechanosensitive ion channel; COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR002529; KEGG: sli:Slin_0979 fumarylacetoacetate hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like; PRIAM: 5-carboxymethyl-2-hydroxymuconate Delta-isomerase; SPTR: Fumarylacetoacetate (FAA) hydrolase; mechanosensitive ion channel protein MscS 4246333..4247526 Runella slithyformis DSM 19594 10872189 YP_004657142.1 CDS Runsl_3652 NC_015703.1 4247590 4248201 D PFAM: Fumarylacetoacetate (FAA) hydrolase; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: dfe:Dfer_2938 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23; manually curated; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 4247590..4248201 Runella slithyformis DSM 19594 10872190 YP_004657143.1 CDS Runsl_3653 NC_015703.1 4248302 4250308 D PFAM: Peptidase M23; COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: mtt:Ftrac_0980 peroxiredoxin; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PRIAM: Peroxiredoxin; SPTR: Peroxiredoxin; manually curated; peptidase M23 4248302..4250308 Runella slithyformis DSM 19594 10872191 YP_004657144.1 CDS Runsl_3654 NC_015703.1 4250241 4250696 D PFAM: AhpC/TSA family; InterPro IPR008815; KEGG: psn:Pedsa_2595 hypothetical protein; PFAM: 23S rRNA-associated protein; SPTR: uncharacterized protein; peroxiredoxin 4250241..4250696 Runella slithyformis DSM 19594 10872192 YP_004657145.1 CDS Runsl_3655 NC_015703.1 4250778 4251131 D PFAM: S23 ribosomal protein; COGs: COG3959 Transketolase N-terminal subunit; InterPro IPR005474; KEGG: lby:Lbys_1197 transketolase domaiN-containing protein; PFAM: Transketolase, N-terminal; PRIAM: Transketolase; SPTR: Transketolase domain-containing protein; S23 ribosomal protein 4250778..4251131 Runella slithyformis DSM 19594 10872193 YP_004657146.1 CDS Runsl_3656 NC_015703.1 4251135 4252025 D PFAM: Transketolase, thiamine diphosphate binding domain; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: psn:Pedsa_2729 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; transketolase 4251135..4252025 Runella slithyformis DSM 19594 10872194 YP_004657147.1 CDS Runsl_3657 NC_015703.1 4252038 4252628 D PFAM: Protein of unknown function (DUF820); COGs: COG4637 ATPase; InterPro IPR003395; KEGG: aap:NT05HA_1643 RecF/RecN/SMC N domain; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: uncharacterized protein; hypothetical protein 4252038..4252628 Runella slithyformis DSM 19594 10872195 YP_004657148.1 CDS Runsl_3658 NC_015703.1 4252645 4253637 D PFAM: RecF/RecN/SMC N terminal domain; KEGG: aap:NT05HA_1642 hypothetical protein; SPTR: uncharacterized protein; SMC domain-containing protein 4252645..4253637 Runella slithyformis DSM 19594 10872196 YP_004657149.1 CDS Runsl_3659 NC_015703.1 4253631 4254233 D COGs: COG3958 Transketolase C-terminal subunit; InterPro IPR005475:IPR005476; KEGG: dfe:Dfer_2935 transketolase central region; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: Transketolase; SPTR: Transketolase central region; hypothetical protein 4253631..4254233 Runella slithyformis DSM 19594 10872197 YP_004657150.1 CDS Runsl_3660 NC_015703.1 4254255 4255211 D PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_0974 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; transketolase 4254255..4255211 Runella slithyformis DSM 19594 10872198 YP_004657151.1 CDS Runsl_3661 NC_015703.1 4255272 4255829 D PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: dfe:Dfer_2933 hypothetical protein; SPTR: uncharacterized protein; ECF subfamily RNA polymerase sigma-24 subunit 4255272..4255829 Runella slithyformis DSM 19594 10872199 YP_004657152.1 CDS Runsl_3662 NC_015703.1 4255894 4256331 D KEGG: dfe:Dfer_2932 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4255894..4256331 Runella slithyformis DSM 19594 10872200 YP_004657153.1 CDS Runsl_3663 NC_015703.1 4256366 4256791 D COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: sli:Slin_0503 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: Response regulator receiver protein; hypothetical protein 4256366..4256791 Runella slithyformis DSM 19594 10872201 YP_004657154.1 CDS Runsl_3664 NC_015703.1 4256861 4257211 R PFAM: LytTr DNA-binding domain; COGs: COG2176 DNA polymerase III alpha subunit (gram-positive type); InterPro IPR013520:IPR006055:IPR006054; KEGG: dfe:Dfer_5151 DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; PRIAM: DNA-directed DNA polymerase; SMART: Exonuclease; SPTR: DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; response regulator receiver protein complement(4256861..4257211) Runella slithyformis DSM 19594 10872202 YP_004657155.1 CDS Runsl_3665 NC_015703.1 4257241 4257852 D PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family; COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: shg:Sph21_3655 regulatory protein TetR; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: TetR family transcriptional regulator; DNA polymerase III subunit epsilon 4257241..4257852 Runella slithyformis DSM 19594 10872203 YP_004657156.1 CDS Runsl_3666 NC_015703.1 4257973 4258515 D PFAM: Bacterial regulatory proteins, tetR family; COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: dfe:Dfer_2793 Zn-dependent hydrolase of the beta-lactamase fold-like protein; SPTR: Outer membrane protein; TetR family transcriptional regulator 4257973..4258515 Runella slithyformis DSM 19594 10872204 YP_004657157.1 CDS Runsl_3667 NC_015703.1 4258597 4259709 D COGs: COG0694 Thioredoxin-like protein and domains; InterPro IPR001075; KEGG: sli:Slin_1109 nitrogen-fixing NifU domain protein; PFAM: NIF system FeS cluster assembly, NifU, C-terminal; SPTR: Nitrogen-fixing NifU domain protein; beta-lactamase fold-like Zn-dependent hydrolase 4258597..4259709 Runella slithyformis DSM 19594 10872205 YP_004657158.1 CDS Runsl_3668 NC_015703.1 4259755 4260018 R PFAM: NifU-like domain; COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR002744:IPR019591; KEGG: dfe:Dfer_4935 protein of unknown function DUF59; PFAM: ATPase-like, ParA/MinD; Protein of unknown function DUF59; SPTR: uncharacterized protein; nitrogen-fixing NifU domain-containing protein complement(4259755..4260018) Runella slithyformis DSM 19594 10872206 YP_004657159.1 CDS Runsl_3669 NC_015703.1 4260097 4261203 R PFAM: ParA/MinD ATPase like; Domain of unknown function DUF59; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: sli:Slin_2022 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; chromosome partitioning protein ParA complement(4260097..4261203) Runella slithyformis DSM 19594 10872207 YP_004657160.1 CDS Runsl_3670 NC_015703.1 4261347 4262687 R PFAM: Major Facilitator Superfamily; major facilitator superfamily protein complement(4261347..4262687) Runella slithyformis DSM 19594 10872208 YP_004657161.1 CDS Runsl_3671 NC_015703.1 4262914 4263198 R COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_2776 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; hypothetical protein complement(4262914..4263198) Runella slithyformis DSM 19594 10872209 YP_004657162.1 CDS Runsl_3672 NC_015703.1 4263313 4264389 D PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_2775 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; signal transduction histidine kinase 4263313..4264389 Runella slithyformis DSM 19594 10872210 YP_004657163.1 CDS Runsl_3673 NC_015703.1 4264423 4265202 D PFAM: Response regulator receiver domain; LytTr DNA-binding domain; KEGG: dfe:Dfer_2941 hypothetical protein; SPTR: uncharacterized protein; LytTR family two component transcriptional regulator 4264423..4265202 Runella slithyformis DSM 19594 10872211 YP_004657164.1 CDS Runsl_3674 NC_015703.1 4265369 4266595 D KEGG: dfe:Dfer_2942 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4265369..4266595 Runella slithyformis DSM 19594 10872212 YP_004657165.1 CDS Runsl_3675 NC_015703.1 4266711 4268372 D COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: dfe:Dfer_3119 beta-lactamase domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Beta-lactamase domain protein; hypothetical protein 4266711..4268372 Runella slithyformis DSM 19594 10872213 YP_004657166.1 CDS Runsl_3676 NC_015703.1 4268437 4269855 D PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain; rhodanese-like protein 4268437..4269855 Runella slithyformis DSM 19594 10872214 YP_004657167.1 CDS Runsl_3677 NC_015703.1 4269891 4270355 D COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: cao:Celal_2001 transcriptional repressor, copy family; PFAM: Penicillinase repressor; SPTR: Penicillinase repressor; hypothetical protein 4269891..4270355 Runella slithyformis DSM 19594 10872215 YP_004657168.1 CDS Runsl_3678 NC_015703.1 4270709 4271080 D PFAM: Penicillinase repressor; COGs: COG4219 Antirepressor regulating drug resistance predicted signal transduction N-terminal membrane component; InterPro IPR008756; KEGG: sli:Slin_3430 peptidase M56 BlaR1; PFAM: Peptidase M56, BlaR1; SPTR: Peptidase M56 BlaR1; CopY family transcriptional repressor 4270709..4271080 Runella slithyformis DSM 19594 10872216 YP_004657169.1 CDS Runsl_3679 NC_015703.1 4271077 4272525 D PFAM: BlaR1 peptidase M56; peptidase M56 BlaR1 4271077..4272525 Runella slithyformis DSM 19594 10872217 YP_004657170.1 CDS Runsl_3680 NC_015703.1 4272648 4272806 R KEGG: dfe:Dfer_1441 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4272648..4272806) Runella slithyformis DSM 19594 10872218 YP_004657171.1 CDS Runsl_3681 NC_015703.1 4272841 4273302 R COGs: COG0495 Leucyl-tRNA synthetase; InterPro IPR002300:IPR015413:IPR013155:IPR002302; KEGG: sli:Slin_1712 leucyl-tRNA synthetase; PFAM: Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; Aminoacyl-tRNA synthetase, class Ia; Aminoacyl-tRNA synthetase, class I (M); PRIAM: Leucine--tRNA ligase; SPTR: Leucyl-tRNA synthetase; TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; hypothetical protein complement(4272841..4273302) Runella slithyformis DSM 19594 10872219 YP_004657172.1 CDS Runsl_3682 NC_015703.1 4273369 4276197 R PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: sli:Slin_0341 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; leucyl-tRNA synthetase complement(4273369..4276197) Runella slithyformis DSM 19594 10872220 YP_004657173.1 CDS Runsl_3683 NC_015703.1 4276379 4276966 D PFAM: Protein of unknown function (DUF820); COGs: COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase; InterPro IPR003329:IPR004528; KEGG: sli:Slin_2800 3-deoxy-D-manno-octulosonatecytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase; PRIAM: 3-deoxy-manno-octulosonate cytidylyltransferase; SPTR: 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; hypothetical protein 4276379..4276966 Runella slithyformis DSM 19594 10872221 YP_004657174.1 CDS Runsl_3684 NC_015703.1 4277130 4277918 D PFAM: Cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR002523:IPR004488; KEGG: sli:Slin_2267 magnesium and cobalt transporter CorA; PFAM: Mg2+ transporter protein, CorA-like; SPTR: Magnesium and cobalt transport protein CorA; TIGRFAM: Magnesium/cobalt transport protein CorA; 3-deoxy-manno-octulosonate cytidylyltransferase 4277130..4277918 Runella slithyformis DSM 19594 10872222 YP_004657175.1 CDS Runsl_3685 NC_015703.1 4277970 4279034 D PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA); COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR013200:IPR000150:IPR006379; KEGG: dfe:Dfer_2852 Cof-like hydrolase; PFAM: HAD superfamily hydrolase-like, type 3; SPTR: Cof-like hydrolase; TIGRFAM: Cof protein; HAD-superfamily hydrolase, subfamily IIB; magnesium and cobalt transport protein CorA 4277970..4279034 Runella slithyformis DSM 19594 10872223 YP_004657176.1 CDS Runsl_3686 NC_015703.1 4279082 4279903 D PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB; COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: mtt:Ftrac_2184 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; cof family hydrolase 4279082..4279903 Runella slithyformis DSM 19594 10872224 YP_004657177.1 CDS Runsl_3687 NC_015703.1 4279909 4281267 R PFAM: Acyltransferase; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: sli:Slin_0741 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: Similar to Q4C2F1_CROWT Hypothetical protein; phospholipid/glycerol acyltransferase complement(4279909..4281267) Runella slithyformis DSM 19594 10872225 YP_004657178.1 CDS Runsl_3688 NC_015703.1 4281338 4281922 D PFAM: Protein of unknown function (DUF820); KEGG: gym:GYMC10_2811 YvaD; SPTR: YvaD; hypothetical protein 4281338..4281922 Runella slithyformis DSM 19594 10872226 YP_004657179.1 CDS Runsl_3689 NC_015703.1 4281934 4282335 R COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: eat:EAT1b_0256 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; hypothetical protein complement(4281934..4282335) Runella slithyformis DSM 19594 10872227 YP_004657180.1 CDS Runsl_3690 NC_015703.1 4282341 4283168 R PFAM: short chain dehydrogenase; InterPro IPR001647; KEGG: hch:HCH_03339 transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; short-chain dehydrogenase/reductase SDR complement(4282341..4283168) Runella slithyformis DSM 19594 10872228 YP_004657181.1 CDS Runsl_3691 NC_015703.1 4283288 4283866 R PFAM: Bacterial regulatory proteins, tetR family; KEGG: sli:Slin_1594 hypothetical protein; SPTR: uncharacterized protein; TetR family transcriptional regulator complement(4283288..4283866) Runella slithyformis DSM 19594 10872229 YP_004657182.1 CDS Runsl_3692 NC_015703.1 4284062 4284724 R PFAM: START domain; COGs: COG0793 Periplasmic protease; InterPro IPR005151; KEGG: fps:FP1003 hypothetical protein; PFAM: Peptidase S41; SMART: Peptidase S41; SPTR: Peptidase, S41 family; hypothetical protein complement(4284062..4284724) Runella slithyformis DSM 19594 10872230 YP_004657183.1 CDS Runsl_3693 NC_015703.1 4284779 4286275 R PFAM: Peptidase S41; KEGG: sli:Slin_5896 hypothetical protein; SPTR: uncharacterized protein; peptidase S41 complement(4284779..4286275) Runella slithyformis DSM 19594 10872231 YP_004657184.1 CDS Runsl_3694 NC_015703.1 4286448 4286927 D KEGG: shg:Sph21_0744 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4286448..4286927 Runella slithyformis DSM 19594 10872232 YP_004657185.1 CDS Runsl_3695 NC_015703.1 4287071 4288753 D COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: sli:Slin_0742 LmbE family protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR: LmbE family protein; hypothetical protein 4287071..4288753 Runella slithyformis DSM 19594 10872233 YP_004657186.1 CDS Runsl_3696 NC_015703.1 4288964 4291462 R PFAM: GlcNAc-PI de-N-acetylase; KEGG: cpi:Cpin_2851 hypothetical protein; SPTR: uncharacterized protein; LmbE family protein complement(4288964..4291462) Runella slithyformis DSM 19594 10872234 YP_004657187.1 CDS Runsl_3697 NC_015703.1 4291808 4292908 D PFAM: Glycosyl hydrolases family 2, TIM barrel domain; KEGG: sli:Slin_6342 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4291808..4292908 Runella slithyformis DSM 19594 10872235 YP_004657188.1 CDS Runsl_3698 NC_015703.1 4293180 4293740 D COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: sli:Slin_0732 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family; hypothetical protein 4293180..4293740 Runella slithyformis DSM 19594 10872236 YP_004657189.1 CDS Runsl_3699 NC_015703.1 4293786 4294475 D PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: sli:Slin_0731 histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SPTR: Histidine kinase; winged helix family two component transcriptional regulator 4293786..4294475 Runella slithyformis DSM 19594 10872237 YP_004657190.1 CDS Runsl_3700 NC_015703.1 4294472 4295836 D PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; integral membrane sensor signal transduction histidine kinase 4294472..4295836 Runella slithyformis DSM 19594 10872238 YP_004657191.1 CDS Runsl_3701 NC_015703.1 4295912 4296220 D COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: mtt:Ftrac_1605 SPFH domain, band 7 family protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: SPFH domain, Band 7 family protein; hypothetical protein 4295912..4296220 Runella slithyformis DSM 19594 10872239 YP_004657192.1 CDS Runsl_3702 NC_015703.1 4296364 4297152 D PFAM: SPFH domain / Band 7 family; KEGG: sli:Slin_0728 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4296364..4297152 Runella slithyformis DSM 19594 10872240 YP_004657193.1 CDS Runsl_3703 NC_015703.1 4297250 4297609 D PFAM: Tellurite resistance protein TerB; InterPro IPR001611:IPR003591; KEGG: lil:LA_3324 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4297250..4297609 Runella slithyformis DSM 19594 10872241 YP_004657194.1 CDS Runsl_3704 NC_015703.1 4298022 4298678 D PFAM: Leucine Rich Repeat; hypothetical protein 4298022..4298678 Runella slithyformis DSM 19594 10872242 YP_004657195.1 CDS Runsl_3705 NC_015703.1 4298874 4299272 D InterPro IPR013216; KEGG: dfe:Dfer_1146 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; hypothetical protein 4298874..4299272 Runella slithyformis DSM 19594 10872243 YP_004657196.1 CDS Runsl_3706 NC_015703.1 4299446 4300213 R PFAM: Methyltransferase domain; KEGG: sli:Slin_2010 hypothetical protein; SPTR: uncharacterized protein; type 11 methyltransferase complement(4299446..4300213) Runella slithyformis DSM 19594 10872244 YP_004657197.1 CDS Runsl_3707 NC_015703.1 4300355 4300663 D KEGG: sli:Slin_2009 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4300355..4300663 Runella slithyformis DSM 19594 10872245 YP_004657198.1 CDS Runsl_3708 NC_015703.1 4300660 4300809 R COGs: COG0124 Histidyl-tRNA synthetase; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; InterPro IPR015807:IPR002314:IPR004154; KEGG: dfe:Dfer_1143 histidyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Anticodon-binding; PRIAM: Histidine--tRNA ligase; SPTR: Histidyl-tRNA synthetase; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; hypothetical protein complement(4300660..4300809) Runella slithyformis DSM 19594 10872246 YP_004657199.1 CDS Runsl_3709 NC_015703.1 4301002 4302363 D PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase; COGs: COG0706 Preprotein translocase subunit YidC; HAMAP: Membrane protein oxaA; InterPro IPR019998:IPR020001:IPR001708; KEGG: sli:Slin_2014 membrane protein insertase; PFAM: Membrane insertion protein, OxaA/YidC; SPTR: Inner membrane protein oxaA; TIGRFAM: Membrane insertion protein, OxaA/YidC, core; Membrane insertion protein, OxoA/YidC, N-terminal; histidyl-tRNA synthetase 4301002..4302363 Runella slithyformis DSM 19594 10872247 YP_004657200.1 CDS Runsl_3710 NC_015703.1 4302460 4304340 R PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; membrane protein insertase, YidC/Oxa1 family, N-terminal domain; COGs: COG1158 Transcription termination factor; InterProIPR004665:IPR011112:IPR011113:IPR000194:IPR 011129:IPR003593; KEGG: dfe:Dfer_5202 transcription termination factor Rho; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, RNA-binding; Rho termination factor, N-terminal; SMART: Cold shock protein; ATPase, AAA+ type, core; SPTR: Transcription termination factor Rho; TIGRFAM: Transcription termination factor Rho; membrane protein OxaA complement(4302460..4304340) Runella slithyformis DSM 19594 10872248 YP_004657201.1 CDS Runsl_3711 NC_015703.1 4304772 4306598 D PFAM: Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho; COGs: COG0313 methyltransferase; InterPro IPR000878; KEGG: sli:Slin_3013 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; PFAM: Tetrapyrrole methylase; SPTR: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; transcription termination factor Rho 4304772..4306598 Runella slithyformis DSM 19594 10872249 YP_004657202.1 CDS Runsl_3712 NC_015703.1 4306676 4307374 R PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: sli:Slin_3012 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; uroporphyrin-III C/tetrapyrrole methyltransferase complement(4306676..4307374) Runella slithyformis DSM 19594 10872250 YP_004657203.1 CDS Runsl_3713 NC_015703.1 4307371 4308135 R PFAM: alpha/beta hydrolase fold; KEGG: dfe:Dfer_2155 hypothetical protein; SPTR: uncharacterized protein; alpha/beta hydrolase complement(4307371..4308135) Runella slithyformis DSM 19594 10872251 YP_004657204.1 CDS Runsl_3714 NC_015703.1 4308417 4309028 R hypothetical protein complement(4308417..4309028) Runella slithyformis DSM 19594 10872252 YP_004657205.1 CDS Runsl_3715 NC_015703.1 4309239 4309469 D COGs: COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); InterPro IPR005875:IPR003135; KEGG: dfe:Dfer_5765 phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; TIGRFAM: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; hypothetical protein 4309239..4309469 Runella slithyformis DSM 19594 10872253 YP_004657206.1 CDS Runsl_3716 NC_015703.1 4309535 4310668 D PFAM: ATP-grasp domain; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurK protein; phosphoribosylaminoimidazole carboxylase ATPase subunit 4309535..4310668 Runella slithyformis DSM 19594 10872254 YP_004657207.1 CDS Runsl_3717 NC_015703.1 4311128 4311367 R COGs: COG1252 NADH dehydrogenase FAD-containing subunit; InterPro IPR013027; KEGG: lby:Lbys_2555 fad-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: NADH dehydrogenase (ubiquinone); SPTR: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; hypothetical protein complement(4311128..4311367) Runella slithyformis DSM 19594 10872255 YP_004657208.1 CDS Runsl_3718 NC_015703.1 4311547 4312851 D PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: sli:Slin_4917 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: Band 7 protein; NADH dehydrogenase (ubiquinone) 4311547..4312851 Runella slithyformis DSM 19594 10872256 YP_004657209.1 CDS Runsl_3719 NC_015703.1 4312993 4313898 D PFAM: SPFH domain / Band 7 family; InterPro IPR008538; KEGG: dfe:Dfer_4621 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; hypothetical protein 4312993..4313898 Runella slithyformis DSM 19594 10872257 YP_004657210.1 CDS Runsl_3720 NC_015703.1 4314045 4314590 D PFAM: Protein of unknown function (DUF820); KEGG: sli:Slin_5175 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4314045..4314590 Runella slithyformis DSM 19594 10872258 YP_004657211.1 CDS Runsl_3721 NC_015703.1 4314671 4315102 R COGs: COG0379 Quinolinate synthase; HAMAP: Quinolinate synthase A; InterPro IPR003473; KEGG: sli:Slin_5129 quinolinate synthetase complex, subunit alpha; PFAM: Quinolinate synthetase A; PRIAM: Quinolinate synthase; SPTR: Quinolinate synthase A; TIGRFAM: Quinolinate synthetase A; hypothetical protein complement(4314671..4315102) Runella slithyformis DSM 19594 10872259 YP_004657212.1 CDS Runsl_3722 NC_015703.1 4315234 4316232 D PFAM: Quinolinate synthetase A protein; TIGRFAM: quinolinate synthetase complex, A subunit; quinolinate synthase A 4315234..4316232 Runella slithyformis DSM 19594 10872260 YP_004657213.1 CDS Runsl_3723 NC_015703.1 4316318 4316425 D KEGG: dfe:Dfer_3149 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4316318..4316425 Runella slithyformis DSM 19594 10872261 YP_004657214.1 CDS Runsl_3724 NC_015703.1 4316485 4317381 D PFAM: Nucleotidyl transferase; COGs: COG0759 conserved hypothetical protein; HAMAP: Protein of unknown function DUF37; InterPro IPR002696; KEGG: sli:Slin_1083 hypothetical protein; PFAM: Protein of unknown function DUF37; SPTR: UPF0161 protein Slin_1083; TIGRFAM: Protein of unknown function DUF37; hypothetical protein 4316485..4317381 Runella slithyformis DSM 19594 10872262 YP_004657215.1 CDS Runsl_3725 NC_015703.1 4317434 4317643 D PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein YidD; KEGG: sli:Slin_4681 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4317434..4317643 Runella slithyformis DSM 19594 10872263 YP_004657216.1 CDS Runsl_3726 NC_015703.1 4317686 4317910 D COGs: COG4185 conserved hypothetical protein; KEGG: pbs:Plabr_1004 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4317686..4317910 Runella slithyformis DSM 19594 10872264 YP_004657217.1 CDS Runsl_3727 NC_015703.1 4317910 4318638 D PFAM: Zeta toxin; hypothetical protein 4317910..4318638 Runella slithyformis DSM 19594 10872265 YP_004657218.1 CDS Runsl_3728 NC_015703.1 4318641 4319096 D COGs: COG0447 Dihydroxynaphthoic acid synthase; InterPro IPR010198:IPR001753; KEGG: lby:Lbys_2851 1,4-dihydroxy-2-naphthoate synthase; PFAM: Crotonase, core; PRIAM: Naphthoate synthase; SPTR: 1,4-Dihydroxy-2-naphthoate synthase; TIGRFAM: Naphthoate synthase; hypothetical protein 4318641..4319096 Runella slithyformis DSM 19594 10872266 YP_004657219.1 CDS Runsl_3729 NC_015703.1 4319179 4320015 D PFAM: Enoyl-CoA hydratase/isomerase; TIGRFAM: naphthoate synthase (dihydroxynaphthoic acid synthetase); KEGG: sli:Slin_5826 hypothetical protein; SPTR: uncharacterized protein; naphthoate synthase 4319179..4320015 Runella slithyformis DSM 19594 10872267 YP_004657220.1 CDS Runsl_3730 NC_015703.1 4320143 4320616 D COGs: COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); HAMAP: NAD(P)H-quinone oxidoreductase subunit 1; InterPro IPR001694; KEGG: sli:Slin_2443 NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone oxidoreductase, subunit 1; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit H 1; hypothetical protein 4320143..4320616 Runella slithyformis DSM 19594 10872268 YP_004657221.1 CDS Runsl_3731 NC_015703.1 4320620 4321705 D PFAM: NADH dehydrogenase; NAD(P)H-quinone oxidoreductase subunit 1 4320620..4321705 Runella slithyformis DSM 19594 10872269 YP_004657222.1 CDS Runsl_3732 NC_015703.1 4321975 4322106 D KEGG: mlo:mll1436 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4321975..4322106 Runella slithyformis DSM 19594 10872270 YP_004657223.1 CDS Runsl_3733 NC_015703.1 4322259 4323551 D COGs: COG1690 conserved hypothetical protein; InterPro IPR001233; KEGG: sli:Slin_1492 hypothetical protein; PFAM: Uncharacterised protein family UPF0027; SPTR: uncharacterized protein; hypothetical protein 4322259..4323551 Runella slithyformis DSM 19594 10872271 YP_004657224.1 CDS Runsl_3734 NC_015703.1 4323643 4325169 D PFAM: Uncharacterized protein family UPF0027; COGs: COG0525 Valyl-tRNA synthetase; HAMAP: Valyl-tRNA synthetase; InterPro IPR002303:IPR002300:IPR013155:IPR019499; KEGG: dfe:Dfer_4095 valyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ia; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; Valyl-tRNA synthetase, class Ia, tRNA binding arm; PRIAM: Valine--tRNA ligase; SPTR: Valyl-tRNA synthetase; TIGRFAM: Valyl-tRNA synthetase, class Ia; hypothetical protein 4323643..4325169 Runella slithyformis DSM 19594 10872272 YP_004657225.1 CDS Runsl_3735 NC_015703.1 4325138 4327966 D PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase; KEGG: lby:Lbys_2119 hypothetical protein; SPTR: uncharacterized protein; valyl-tRNA synthetase 4325138..4327966 Runella slithyformis DSM 19594 10872273 YP_004657226.1 CDS Runsl_3736 NC_015703.1 4328029 4328799 R COGs: COG1522 Transcriptional regulators; InterPro IPR019887:IPR019888; KEGG: dfe:Dfer_3786 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type; SPTR: Transcriptional regulator, AsnC family; hypothetical protein complement(4328029..4328799) Runella slithyformis DSM 19594 10872274 YP_004657227.1 CDS Runsl_3737 NC_015703.1 4328924 4329388 R PFAM: AsnC family; COGs: COG0241 Histidinol phosphatase and related phosphatase; InterPro IPR006543:IPR006549:IPR005834; KEGG: sli:Slin_5528 hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Hydrolase, HAD-superfamily, subfamily IIIA; TIGRFAM: Histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; AsnC family transcriptional regulator complement(4328924..4329388) Runella slithyformis DSM 19594 10872275 YP_004657228.1 CDS Runsl_3738 NC_015703.1 4329628 4330143 D PFAM: Polynucleotide kinase 3 phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase domain; histidinol-phosphate phosphatase 4329628..4330143 Runella slithyformis DSM 19594 10872276 YP_004657229.1 CDS Runsl_3739 NC_015703.1 4330144 4330260 R COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183; KEGG: dfe:Dfer_3427 Orn/DAP/Arg decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Orn/DAP/Arg decarboxylase 2; hypothetical protein complement(4330144..4330260) Runella slithyformis DSM 19594 10872277 YP_004657230.1 CDS Runsl_3740 NC_015703.1 4330352 4331833 R PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; COGs: COG0554 Glycerol kinase; HAMAP: Glycerol kinase; InterPro IPR005999:IPR018484:IPR018485; KEGG: dfe:Dfer_3902 glycerol kinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; PRIAM: Glycerol kinase; SPTR: Glycerol kinase; TIGRFAM: Glycerol kinase; Orn/DAP/Arg decarboxylase 2 complement(4330352..4331833) Runella slithyformis DSM 19594 10872278 YP_004657231.1 CDS Runsl_3741 NC_015703.1 4332258 4333757 D PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: glycerol kinase; COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: sli:Slin_3005 fatty acid hydroxylase; PFAM: Fatty acid hydroxylase; SPTR: Fatty acid hydroxylase; glycerol kinase 4332258..4333757 Runella slithyformis DSM 19594 10872279 YP_004657232.1 CDS Runsl_3742 NC_015703.1 4333807 4334607 R PFAM: Fatty acid hydroxylase superfamily; COGs: COG0009 translation factor (SUA5); InterPro IPR004388:IPR006070:IPR005145; KEGG: sli:Slin_1394 SUA5/YciO/YrdC/YwlC family protein; PFAM: Sua5/YciO/YrdC, N-terminal; SUA5; SPTR: Sua5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; fatty acid hydroxylase complement(4333807..4334607) Runella slithyformis DSM 19594 10872280 YP_004657233.1 CDS Runsl_3743 NC_015703.1 4334654 4335616 R PFAM: yrdC domain; SUA5 domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; InterPro IPR002035; KEGG: dfe:Dfer_5483 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: von Willebrand factor type A; Sua5/YciO/YrdC/YwlC family protein complement(4334654..4335616) Runella slithyformis DSM 19594 10872281 YP_004657234.1 CDS Runsl_3744 NC_015703.1 4335701 4336660 D PFAM: von Willebrand factor type A domain; COGs: COG0531 Amino acid transporter; InterPro IPR004757:IPR004841; KEGG: shg:Sph21_0667 ethanolamine transporter; PFAM: Amino acid permease-associated region; SPTR: Ethanolamine transporter; TIGRFAM: Ethanolamine permease; von Willebrand factor A 4335701..4336660 Runella slithyformis DSM 19594 10872282 YP_004657235.1 CDS Runsl_3745 NC_015703.1 4336740 4338071 D PFAM: Amino acid permease; TIGRFAM: ethanolamine permease; COGs: COG4974 Site-specific recombinase XerD; HAMAP: Tyrosine recombinase xerC; InterPro IPR011932:IPR004107:IPR002104; KEGG: dfe:Dfer_2797 tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Tyrosine recombinase xerC 1; TIGRFAM: Tyrosine recombinase XerD; ethanolamine transporter 4336740..4338071 Runella slithyformis DSM 19594 10872283 YP_004657236.1 CDS Runsl_3746 NC_015703.1 4338585 4339547 D PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase; TIGRFAM: tyrosine recombinase XerD; KEGG: sli:Slin_2437 hypothetical protein; SPTR: uncharacterized protein; tyrosine recombinase XerC 4338585..4339547 Runella slithyformis DSM 19594 10872284 YP_004657237.1 CDS Runsl_3747 NC_015703.1 4339638 4340177 R COGs: COG0520 Selenocysteine lyase; InterPro IPR000192; KEGG: sli:Slin_2438 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; SPTR: Aminotransferase class V; hypothetical protein complement(4339638..4340177) Runella slithyformis DSM 19594 10872285 YP_004657238.1 CDS Runsl_3748 NC_015703.1 4340338 4341510 D PFAM: Aminotransferase class-V; KEGG: sli:Slin_2440 hypothetical protein; SPTR: uncharacterized protein; class V aminotransferase 4340338..4341510 Runella slithyformis DSM 19594 10872286 YP_004657239.1 CDS Runsl_3749 NC_015703.1 4341507 4341689 R COGs: COG2062 Phosphohistidine phosphatase SixA; InterPro IPR013078; KEGG: dfe:Dfer_2799 phosphohistidine phosphatase, SixA; PFAM: Phosphoglycerate mutase; SPTR: phosphohistidine phosphatase, SixA; hypothetical protein complement(4341507..4341689) Runella slithyformis DSM 19594 10872287 YP_004657240.1 CDS Runsl_3750 NC_015703.1 4341737 4342333 R PFAM: Phosphoglycerate mutase; TIGRFAM: phosphohistidine phosphatase SixA; COGs: COG4108 Peptide chain release factor RF-3; InterPro IPR004548:IPR005225:IPR000795; KEGG: sli:Slin_1118 peptide chain release factor 3; PFAM: Protein synthesis factor, GTP-binding; SPTR: Peptide chain release factor 3; TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; phosphohistidine phosphatase, SixA complement(4341737..4342333) Runella slithyformis DSM 19594 10872288 YP_004657241.1 CDS Runsl_3751 NC_015703.1 4342827 4344422 D PFAM: Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; peptide chain release factor 3; COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR010976:IPR010972:IPR006402:IPR005834; KEGG: sli:Slin_2877 beta-phosphoglucomutase; PFAM: Haloacid dehalogenase-like hydrolase; PRIAM: Beta-phosphoglucomutase; SPTR: Beta-phosphoglucomutase; TIGRFAM: Beta-phosphoglucomutase; Beta-phosphoglucomutase hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; peptide chain release factor 3 4342827..4344422 Runella slithyformis DSM 19594 10872289 YP_004657242.1 CDS Runsl_3752 NC_015703.1 4344619 4345284 R PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: beta-phosphoglucomutase; haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; beta-phosphoglucomutase hydrolase; InterPro IPR003737; KEGG: dfe:Dfer_3412 LmbE family protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR: LmbE family protein; beta-phosphoglucomutase complement(4344619..4345284) Runella slithyformis DSM 19594 10872290 YP_004657243.1 CDS Runsl_3753 NC_015703.1 4345375 4346217 R PFAM: GlcNAc-PI de-N-acetylase; LmbE family protein complement(4345375..4346217) Runella slithyformis DSM 19594 10872291 YP_004657244.1 CDS Runsl_3754 NC_015703.1 4346425 4346583 D InterPro IPR005181; KEGG: sli:Slin_5096 hypothetical protein; PFAM: Protein of unknown function DUF303, acetylesterase SPTR: uncharacterized protein; hypothetical protein 4346425..4346583 Runella slithyformis DSM 19594 10872292 YP_004657245.1 CDS Runsl_3755 NC_015703.1 4346642 4348525 D PFAM: Domain of unknown function (DUF303); COGs: COG0647 sugar phosphatase of the HAD superfamily; InterPro IPR006357:IPR005834; KEGG: dfe:Dfer_3644 HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IIA; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; hypothetical protein 4346642..4348525 Runella slithyformis DSM 19594 10872293 YP_004657246.1 CDS Runsl_3756 NC_015703.1 4348545 4349399 R TIGRFAM: Haloacid Dehalogenase Superfamily Class (subfamily) IIA; HAD-superfamily class IIA hydrolase, TIGR01459; KEGG: sli:Slin_5140 hypothetical protein; SPTR: uncharacterized protein; HAD superfamily hydrolase complement(4348545..4349399) Runella slithyformis DSM 19594 10872294 YP_004657247.1 CDS Runsl_3757 NC_015703.1 4349440 4350486 R COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; InterPro IPR000713:IPR013221; KEGG: dfe:Dfer_4117 Mur ligase middle domain protein; PFAM: Mur ligase, N-terminal; Mur ligase, central; PRIAM: UDP-N-acetylmuramate--L-alanine ligase; SPTR: Mur ligase middle domain protein; hypothetical protein complement(4349440..4350486) Runella slithyformis DSM 19594 10872295 YP_004657248.1 CDS Runsl_3758 NC_015703.1 4350681 4352042 R PFAM: Mur ligase, catalytic domain; Mur ligase middle domain; COGs: COG1214 Inactive homolog of metal-dependent protease molecular chaperone; InterPro IPR000905; KEGG: dfe:Dfer_3849 peptidase M22 glycoprotease; PFAM: Peptidase M22, glycoprotease; SPTR: Peptidase M22 glycoprotease; TIGRFAM: universal protein YeaZ; UDP-N-acetylmuramate--L-alanine ligase complement(4350681..4352042) Runella slithyformis DSM 19594 10872296 YP_004657249.1 CDS Runsl_3759 NC_015703.1 4352184 4352882 D PFAM: Glycoprotease; TIGRFAM: universal bacterial protein YeaZ; hypothetical protein 4352184..4352882 Runella slithyformis DSM 19594 10872297 YP_004657250.1 CDS Runsl_3760 NC_015703.1 4352828 4352938 R COGs: COG1520 FOG: WD40-like repeat; InterPro IPR002372:IPR018391; KEGG: mpi:Mpet_1134 pyrrolo-quinoline quinone; PFAM: Pyrrolo-quinoline quinone repeat; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Pyrrolo-quinoline quinone; tmRNA as predicted by Rfam (RF00023), score 132.00; hypothetical protein complement(4352828..4352938) Runella slithyformis DSM 19594 10872298 YP_004657251.1 CDS Runsl_R0032 NC_015703.1 4352994 4354181 D PFAM: PQQ enzyme repeat; pyrrolo-quinoline quinone repeat-containing protein 4352994..4354181 Runella slithyformis DSM 19594 10872299 YP_004657252.1 CDS Runsl_3762 NC_015703.1 4354970 4355110 D hypothetical protein 4354970..4355110 Runella slithyformis DSM 19594 10872300 YP_004657253.1 CDS Runsl_3763 NC_015703.1 4355248 4355499 D KEGG: npu:Npun_F6119 transposase; SPTR: uncharacterized protein; hypothetical protein 4355248..4355499 Runella slithyformis DSM 19594 10872301 YP_004657254.1 CDS Runsl_3764 NC_015703.1 4355998 4356486 R hypothetical protein complement(4355998..4356486) Runella slithyformis DSM 19594 10872302 YP_004657255.1 CDS Runsl_3765 NC_015703.1 4356556 4357902 R hypothetical protein complement(4356556..4357902) Runella slithyformis DSM 19594 10872303 YP_004657256.1 CDS Runsl_3766 NC_015703.1 4357963 4358193 R hypothetical protein complement(4357963..4358193) Runella slithyformis DSM 19594 10872304 YP_004657257.1 CDS Runsl_3767 NC_015703.1 4359036 4359155 R COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595:IPR001808; KEGG: sli:Slin_6930 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; SPTR: Transcriptional regulator, Crp/Fnr family; hypothetical protein complement(4359036..4359155) Runella slithyformis DSM 19594 10872305 YP_004657258.1 CDS Runsl_3768 NC_015703.1 4359167 4359817 R PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR008030; KEGG: mtt:Ftrac_1330 NmrA family protein; SPTR: NmrA family protein; Crp/Fnr family transcriptional regulator complement(4359167..4359817) Runella slithyformis DSM 19594 10872306 YP_004657259.1 CDS Runsl_3769 NC_015703.1 4359930 4360799 R PFAM: NmrA-like family; KEGG: fjo:Fjoh_3341 glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; NmrA family protein complement(4359930..4360799) Runella slithyformis DSM 19594 10872307 YP_004657260.1 CDS Runsl_3770 NC_015703.1 4360935 4361591 R COGs: COG2323 membrane protein; InterPro IPR007353; KEGG: fba:FIC_00896 protein of unknown function DUF421; PFAM: Protein of unknown function DUF421; SPTR: uncharacterized protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(4360935..4361591) Runella slithyformis DSM 19594 10872308 YP_004657261.1 CDS Runsl_3771 NC_015703.1 4361904 4362584 R PFAM: Protein of unknown function (DUF421); hypothetical protein complement(4361904..4362584) Runella slithyformis DSM 19594 10872309 YP_004657262.1 CDS Runsl_3772 NC_015703.1 4362771 4362947 R PFAM: Integral membrane protein TerC family; COGs: COG4430 conserved hypothetical protein; KEGG: zpr:ZPR_3958 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4362771..4362947) Runella slithyformis DSM 19594 10872310 YP_004657263.1 CDS Runsl_3773 NC_015703.1 4363066 4363644 R COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; KEGG: dfe:Dfer_0232 ATP-dependent exoDNAse (exonuclease V); SPTR: ATP-dependent exoDNAse (Exonuclease V); hypothetical protein complement(4363066..4363644) Runella slithyformis DSM 19594 10872311 YP_004657264.1 CDS Runsl_3774 NC_015703.1 4363702 4365120 R PFAM: PIF1 helicase; COGs: COG2905 signal-transduction protein containing cAMP-binding and CBS domains; InterPro IPR000644; KEGG: sli:Slin_1462 signal transduction protein with CBS domains; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; SPTR: signal transduction protein with CBS domains; ATP-dependent exoDNAse complement(4363702..4365120) Runella slithyformis DSM 19594 10872312 YP_004657265.1 CDS Runsl_3775 NC_015703.1 4365258 4365698 D PFAM: CBS domain; COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: sli:Slin_1463 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; signal transduction protein with CBS domains 4365258..4365698 Runella slithyformis DSM 19594 10872313 YP_004657266.1 CDS Runsl_3776 NC_015703.1 4365817 4366335 D PFAM: NUDIX domain; KEGG: sli:Slin_1464 hypothetical protein; SPTR: uncharacterized protein; NUDIX hydrolase 4365817..4366335 Runella slithyformis DSM 19594 10872314 YP_004657267.1 CDS Runsl_3777 NC_015703.1 4366462 4367352 D COGs: COG0669 Phosphopantetheine adenylyltransferase; HAMAP: Coenzyme A biosynthesis protein; InterPro IPR001980:IPR004821:IPR004820; KEGG: sli:Slin_1465 pantetheine-phosphate adenylyltransferase; PFAM: Cytidylyltransferase; PRIAM: Pantetheine-phosphate adenylyltransferase; SPTR: Phosphopantetheine adenylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; hypothetical protein 4366462..4367352 Runella slithyformis DSM 19594 10872315 YP_004657268.1 CDS Runsl_3778 NC_015703.1 4367379 4367852 D PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain; KEGG: dfe:Dfer_0389 hypothetical protein; SPTR: uncharacterized protein; phosphopantetheine adenylyltransferase 4367379..4367852 Runella slithyformis DSM 19594 10872316 YP_004657269.1 CDS Runsl_3779 NC_015703.1 4367836 4368240 R COGs: COG4464 Capsular polysaccharide biosynthesis protein; InterPro IPR004013; KEGG: chu:CHU_0001 capsular polysaccharide biosynthesis protein; PFAM: PHP, C-terminal; SPTR: Capsular polysaccharide biosynthesis protein; hypothetical protein complement(4367836..4368240) Runella slithyformis DSM 19594 10872317 YP_004657270.1 CDS Runsl_3780 NC_015703.1 4368300 4369043 R COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: dfe:Dfer_2965 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PHP domain-containing protein complement(4368300..4369043) Runella slithyformis DSM 19594 10872318 YP_004657271.1 CDS Runsl_3781 NC_015703.1 4369237 4369782 R PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_2907 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; dTDP-4-dehydrorhamnose 3,5-epimerase complement(4369237..4369782) Runella slithyformis DSM 19594 10872319 YP_004657272.1 CDS Runsl_3782 NC_015703.1 4369832 4370923 D PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_2906 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; signal transduction histidine kinase 4369832..4370923 Runella slithyformis DSM 19594 10872320 YP_004657273.1 CDS Runsl_3783 NC_015703.1 4370996 4371730 D PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR019546:IPR000683; KEGG: psn:Pedsa_0077 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: Oxidoreductase domain protein; LytTR family two component transcriptional regulator 4370996..4371730 Runella slithyformis DSM 19594 10872321 YP_004657274.1 CDS Runsl_3784 NC_015703.1 4371815 4373200 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; KEGG: sli:Slin_4197 DinB family protein; SPTR: DinB family protein; oxidoreductase domain-containing protein complement(4371815..4373200) Runella slithyformis DSM 19594 10872322 YP_004657275.1 CDS Runsl_3785 NC_015703.1 4373645 4374097 R PFAM: DinB family; COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); InterPro IPR004655:IPR013751:IPR013747; KEGG: dfe:Dfer_5065 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase III; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase 3 3; TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); DinB family protein complement(4373645..4374097) Runella slithyformis DSM 19594 10872323 YP_004657276.1 CDS Runsl_3786 NC_015703.1 4374256 4375257 R PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; COGs: COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase PurS component; InterPro IPR003850; KEGG: sli:Slin_3016 phosphoribosylformylglycinamidine synthase, PurS; PFAM: Phosphoribosylformylglycinamidine synthetase, PurS subunit; SPTR: Phosphoribosylformylglycinamidine synthase, PurS protein; TIGRFAM: Phosphoribosylformylglycinamidine synthetase, PurS subunit; 3-oxoacyl-ACP synthase complement(4374256..4375257) Runella slithyformis DSM 19594 10872324 YP_004657277.1 CDS Runsl_3787 NC_015703.1 4375354 4375605 R PFAM: Phosphoribosylformylglycinamidine (FGAM) synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase, purS protein; COGs: COG1183 Phosphatidylserine synthase; InterPro IPR004533:IPR000462; KEGG: dfe:Dfer_5066 CDP-diacylglycerol/serineO-phosphatidyltransfera se; PFAM: CDP-alcohol phosphatidyltransferase; SPTR:CDP-diacylglycerol-serine-O-phosphatidyltransf erase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; phosphoribosylformylglycinamidine synthase PurS complement(4375354..4375605) Runella slithyformis DSM 19594 10872325 YP_004657278.1 CDS Runsl_3788 NC_015703.1 4375697 4376398 R PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sli:Slin_3014 beta-lactamase; SPTR: Beta-lactamase domain protein; CDP-diacylglycerol/serine O-phosphatidyltransferase complement(4375697..4376398) Runella slithyformis DSM 19594 10872326 YP_004657279.1 CDS Runsl_3789 NC_015703.1 4376472 4377110 R PFAM: Metallo-beta-lactamase superfamily; COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: chu:CHU_3379 hypothetical protein; PFAM: Conserved hypothetical protein CHP00730; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00730; beta-lactamase complement(4376472..4377110) Runella slithyformis DSM 19594 10872327 YP_004657280.1 CDS Runsl_3790 NC_015703.1 4377170 4377919 D PFAM: Possible lysine decarboxylase; TIGRFAM: TIGR00725 family protein; TIGR00730 family protein; KEGG: sli:Slin_4251 membrane protein; SPTR: Membrane protein; hypothetical protein 4377170..4377919 Runella slithyformis DSM 19594 10872328 YP_004657281.1 CDS Runsl_3791 NC_015703.1 4377920 4378288 R KEGG: dfe:Dfer_2810 hypothetical protein; SPTR: uncharacterized protein; manually curated; hypothetical protein complement(4377920..4378288) Runella slithyformis DSM 19594 10872329 YP_004657282.1 CDS Runsl_3792 NC_015703.1 4378373 4378522 R KEGG: dfe:Dfer_2811 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4378373..4378522) Runella slithyformis DSM 19594 10872330 YP_004657283.1 CDS Runsl_3793 NC_015703.1 4378666 4379793 R COGs: COG2192 carbamoyl transferase NodU family; InterPro IPR003696; KEGG: dfe:Dfer_2812 carbamoyltransferase; PFAM: Carbamoyltransferase; SPTR: Carbamoyltransferase; hypothetical protein complement(4378666..4379793) Runella slithyformis DSM 19594 10872331 YP_004657284.1 CDS Runsl_3794 NC_015703.1 4379866 4381728 R PFAM: Carbamoyltransferase; InterPro IPR001087; KEGG: ter:Tery_1681 hypothetical protein; PFAM: Lipase, GDSL; SPTR: uncharacterized protein; carbamoyltransferase complement(4379866..4381728) Runella slithyformis DSM 19594 10872332 YP_004657285.1 CDS Runsl_3795 NC_015703.1 4381887 4383284 D PFAM: GDSL-like Lipase/Acylhydrolase; COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: sli:Slin_4256 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; SPTR: Ppx/GppA phosphatase; G-D-S-L family lipolytic protein 4381887..4383284 Runella slithyformis DSM 19594 10872333 YP_004657286.1 CDS Runsl_3796 NC_015703.1 4383336 4384208 D PFAM: Ppx/GppA phosphatase; COGs: COG3503 membrane protein; KEGG: sli:Slin_2897 hypothetical protein; SPTR: uncharacterized protein; Ppx/GppA phosphatase 4383336..4384208 Runella slithyformis DSM 19594 10872334 YP_004657287.1 CDS Runsl_3797 NC_015703.1 4384276 4385520 R PFAM: Protein of unknown function (DUF1624); COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789; KEGG: dfe:Dfer_1630 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; hypothetical protein complement(4384276..4385520) Runella slithyformis DSM 19594 10872335 YP_004657288.1 CDS Runsl_3798 NC_015703.1 4385543 4386304 R PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3920 Signal transduction histidine kinase; InterPro IPR011495:IPR003594; KEGG: dfe:Dfer_1629 signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: Signal transduction histidine kinase; response regulator receiver protein complement(4385543..4386304) Runella slithyformis DSM 19594 10872336 YP_004657289.1 CDS Runsl_3799 NC_015703.1 4386312 4388111 R PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro IPR005182; KEGG: pgi:PG1471 hypothetical protein; PFAM: Protein of unknown function DUF304, prokaryotic transmembrane adjacent region; SPTR: uncharacterized protein; signal transduction histidine kinase complement(4386312..4388111) Runella slithyformis DSM 19594 10872337 YP_004657290.1 CDS Runsl_3800 NC_015703.1 4388449 4388892 D PFAM: Bacterial membrane flanked domain; hypothetical protein 4388449..4388892 Runella slithyformis DSM 19594 10872338 YP_004657291.1 CDS Runsl_3801 NC_015703.1 4389151 4389327 R KEGG: ppn:Palpr_1196 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4389151..4389327) Runella slithyformis DSM 19594 10872339 YP_004657292.1 CDS Runsl_3802 NC_015703.1 4389366 4390430 D KEGG: sna:Snas_2969 hypothetical protein; SPTR: RDD domain containing protein; hypothetical protein 4389366..4390430 Runella slithyformis DSM 19594 10872340 YP_004657293.1 CDS Runsl_3803 NC_015703.1 4390490 4391122 D KEGG: ppn:Palpr_0095 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4390490..4391122 Runella slithyformis DSM 19594 10872341 YP_004657294.1 CDS Runsl_3804 NC_015703.1 4391669 4393672 D COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: sli:Slin_1477 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; PRIAM: D-amino-acid dehydrogenase; SPTR: FAD dependent oxidoreductase; hypothetical protein 4391669..4393672 Runella slithyformis DSM 19594 10872342 YP_004657295.1 CDS Runsl_3805 NC_015703.1 4393926 4395173 D PFAM: FAD dependent oxidoreductase; KEGG: sli:Slin_1922 hypothetical protein; SPTR: uncharacterized protein; D-amino-acid dehydrogenase 4393926..4395173 Runella slithyformis DSM 19594 10872343 YP_004657296.1 CDS Runsl_3806 NC_015703.1 4395213 4395632 R COGs: COG3938 Proline racemase; InterPro IPR008794; KEGG: tsi:TSIB_0630 proline racemase; PFAM: Proline racemase; PRIAM: Proline racemase; SPTR: Proline racemase; hypothetical protein complement(4395213..4395632) Runella slithyformis DSM 19594 10872344 YP_004657297.1 CDS Runsl_3807 NC_015703.1 4395776 4396831 D PFAM: Proline racemase; COGs: COG2423 ornithine cyclodeaminase mu-crystallin homolog; InterPro IPR003462; KEGG: tro:trd_0794 ornithine cyclodeaminase; PFAM: Ornithine cyclodeaminase/mu-crystallin; PRIAM: Ornithine cyclodeaminase; SPTR: Ornithine cyclodeaminase/mu-crystallin family protein; proline racemase 4395776..4396831 Runella slithyformis DSM 19594 10872345 YP_004657298.1 CDS Runsl_3808 NC_015703.1 4396940 4397920 D PFAM: Ornithine cyclodeaminase/mu-crystallin family; COGs: COG0040 ATP phosphoribosyltransferase; HAMAP: ATP phosphoribosyltransferase; Histidine biosynthesis HisG, ATP phosphoribosyltransferase, subgroup; InterPro IPR020621:IPR013820:IPR013115; KEGG: sli:Slin_1783 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase, catalytic region; Histidine biosynthesis HisG, C-terminal; PRIAM: ATP phosphoribosyltransferase; SPTR: ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, catalytic region; Histidine biosynthesis HisG, C-terminal; ornithine cyclodeaminase 4396940..4397920 Runella slithyformis DSM 19594 10872346 YP_004657299.1 CDS Runsl_3809 NC_015703.1 4398224 4399078 D PFAM: HisG, C-terminal domain; ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, C-terminal domain; ATP phosphoribosyltransferase; COGs: COG0141 Histidinol dehydrogenase; HAMAP: Histidinol dehydrogenase, prokaryotic-type; InterPro IPR012131; KEGG: sli:Slin_1784 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase, prokaryotic-type; PRIAM: Histidinol dehydrogenase; SPTR: Histidinol dehydrogenase; TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; ATP phosphoribosyltransferase 4398224..4399078 Runella slithyformis DSM 19594 10872347 YP_004657300.1 CDS Runsl_3810 NC_015703.1 4399149 4400417 D PFAM: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; COGs: COG3950 ATP-binding protein involved in virulence; InterPro IPR003593; KEGG: sli:Slin_0641 ATPase AAA; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; histidinol dehydrogenase 4399149..4400417 Runella slithyformis DSM 19594 10872348 YP_004657301.1 CDS Runsl_3811 NC_015703.1 4400508 4401872 D PFAM: RecF/RecN/SMC N terminal domain; KEGG: spl:Spea_4172 hypothetical protein; SPTR: uncharacterized protein; ATPase AAA 4400508..4401872 Runella slithyformis DSM 19594 10872349 YP_004657302.1 CDS Runsl_3812 NC_015703.1 4401869 4402294 D hypothetical protein 4401869..4402294 Runella slithyformis DSM 19594 10872350 YP_004657303.1 CDS Runsl_3813 NC_015703.1 4402211 4402375 R COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; HAMAP: Histidinol-phosphate aminotransferase; InterPro IPR005861:IPR004839; KEGG: sli:Slin_1795 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/II; PRIAM: Histidinol-phosphate transaminase; SPTR: Histidinol-phosphate aminotransferase; TIGRFAM: Histidinol-phosphate aminotransferase; hypothetical protein complement(4402211..4402375) Runella slithyformis DSM 19594 10872351 YP_004657304.1 CDS Runsl_3814 NC_015703.1 4402543 4403601 D PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; KEGG: sli:Slin_1796 hypothetical protein; SPTR: uncharacterized protein; histidinol-phosphate aminotransferase 4402543..4403601 Runella slithyformis DSM 19594 10872352 YP_004657305.1 CDS Runsl_3815 NC_015703.1 4403658 4404191 D COGs: COG0240 Glycerol-3-phosphate dehydrogenase; InterPro IPR011128:IPR006109; KEGG: dfe:Dfer_2864 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal; NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; PRIAM: Glycerol-3-phosphate dehydrogenase (NAD(P)(+)); SPTR: Glycerol-3-phosphate dehydrogenase [NAD(P)+]; hypothetical protein 4403658..4404191 Runella slithyformis DSM 19594 10872353 YP_004657306.1 CDS Runsl_3816 NC_015703.1 4404312 4405301 R PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; glycerol-3-phosphate dehydrogenase (NAD(P)(+)) complement(4404312..4405301) Runella slithyformis DSM 19594 10872354 YP_004657307.1 CDS Runsl_3817 NC_015703.1 4405378 4405503 R InterPro IPR011701; KEGG: sli:Slin_3636 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; hypothetical protein complement(4405378..4405503) Runella slithyformis DSM 19594 10872355 YP_004657308.1 CDS Runsl_3818 NC_015703.1 4405527 4406885 D PFAM: Major Facilitator Superfamily; InterPro IPR011467; KEGG: dfe:Dfer_3633 protein of unknown function DUF1573; PFAM: Protein of unknown function DUF1573; SPTR: uncharacterized protein; major facilitator superfamily protein 4405527..4406885 Runella slithyformis DSM 19594 10872356 YP_004657309.1 CDS Runsl_3819 NC_015703.1 4406989 4407369 R PFAM: Protein of unknown function (DUF1573); COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: dfe:Dfer_3565 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase; hypothetical protein complement(4406989..4407369) Runella slithyformis DSM 19594 10872357 YP_004657310.1 CDS Runsl_3820 NC_015703.1 4407584 4408831 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: dfe:Dfer_3566 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family; integral membrane sensor signal transduction histidine kinase 4407584..4408831 Runella slithyformis DSM 19594 10872358 YP_004657311.1 CDS Runsl_3821 NC_015703.1 4408931 4409629 D PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR003313:IPR000005:IPR018060; KEGG: phe:Phep_2431 AraC protein arabinose-binding/dimerisation; PFAM: Helix-turn-helix, AraC type; AraC protein, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator; winged helix family two component transcriptional regulator 4408931..4409629 Runella slithyformis DSM 19594 10872359 YP_004657312.1 CDS Runsl_3822 NC_015703.1 4409635 4410513 R PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2160 L-arabinose isomerase; KEGG: phe:Phep_2430 L-arabinose isomerase; SPTR: L-arabinose isomerase; AraC family transcriptional regulator complement(4409635..4410513) Runella slithyformis DSM 19594 10872360 YP_004657313.1 CDS Runsl_3823 NC_015703.1 4410729 4412162 D PFAM: L-arabinose isomerase; COGs: COG1066 ATP-dependent serine protease; InterPro IPR004504:IPR003593; KEGG: dfe:Dfer_4772 DNA repair protein RadA; SMART: ATPase, AAA+ type, core; SPTR: DNA repair protein radA; TIGRFAM: DNA repair protein RadA; L-arabinose isomerase 4410729..4412162 Runella slithyformis DSM 19594 10872361 YP_004657314.1 CDS Runsl_3824 NC_015703.1 4412166 4413533 R PFAM: KaiC; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: DNA repair protein RadA; COGs: COG3967 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein); InterPro IPR002198; KEGG: cpi:Cpin_2130 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; DNA repair protein RadA complement(4412166..4413533) Runella slithyformis DSM 19594 10872362 YP_004657315.1 CDS Runsl_3825 NC_015703.1 4413731 4414456 R PFAM: short chain dehydrogenase; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_2735 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; short-chain dehydrogenase/reductase SDR complement(4413731..4414456) Runella slithyformis DSM 19594 10872363 YP_004657316.1 CDS Runsl_3826 NC_015703.1 4414647 4415306 D PFAM: ABC transporter; COGs: COG1373 ATPase (AAA+ superfamily); KEGG: pph:Ppha_2828 ATPase (AAA+ superfamily)-like protein; SPTR: uncharacterized protein; phosphonate-transporting ATPase 4414647..4415306 Runella slithyformis DSM 19594 10872364 YP_004657317.1 CDS Runsl_3827 NC_015703.1 4415431 4416879 R KEGG: chu:CHU_0806 hypothetical protein; SPTR: uncharacterized protein; ATPase -like protein complement(4415431..4416879) Runella slithyformis DSM 19594 10872365 YP_004657318.1 CDS Runsl_3828 NC_015703.1 4417342 4417773 R KEGG: lby:Lbys_0957 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4417342..4417773) Runella slithyformis DSM 19594 10872366 YP_004657319.1 CDS Runsl_3829 NC_015703.1 4417766 4418221 R KEGG: lby:Lbys_0958 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4417766..4418221) Runella slithyformis DSM 19594 10872367 YP_004657320.1 CDS Runsl_3830 NC_015703.1 4418232 4418858 R KEGG: mtt:Ftrac_1316 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4418232..4418858) Runella slithyformis DSM 19594 10872368 YP_004657321.1 CDS Runsl_3831 NC_015703.1 4418939 4419310 R KEGG: chu:CHU_1451 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4418939..4419310) Runella slithyformis DSM 19594 10872369 YP_004657322.1 CDS Runsl_3832 NC_015703.1 4419568 4420191 R InterPro IPR000595; KEGG: lby:Lbys_0959 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding protein; hypothetical protein complement(4419568..4420191) Runella slithyformis DSM 19594 10872370 YP_004657323.1 CDS Runsl_3833 NC_015703.1 4420244 4420858 R PFAM: Cyclic nucleotide-binding domain; InterPro IPR011637; KEGG: phe:Phep_1775 DoxX family protein; PFAM: DoxX; SPTR: DoxX family protein; cyclic nucleotide-binding protein complement(4420244..4420858) Runella slithyformis DSM 19594 10872371 YP_004657324.1 CDS Runsl_3834 NC_015703.1 4421043 4421483 R PFAM: DoxX; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: shg:Sph21_2105 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; DoxX family protein complement(4421043..4421483) Runella slithyformis DSM 19594 10872372 YP_004657325.1 CDS Runsl_3835 NC_015703.1 4421709 4422290 R PFAM: Cyclic nucleotide-binding domain; COGs: COG2312 Erythromycin esterase homolog; InterPro IPR007815; KEGG: lsp:Bsph_4494 erythromycin esterase-like protein; PFAM: Erythromycin esterase; SPTR: Erythromycin esterase-like protein; Crp/Fnr family transcriptional regulator complement(4421709..4422290) Runella slithyformis DSM 19594 10872373 YP_004657326.1 CDS Runsl_3836 NC_015703.1 4422345 4423655 R PFAM: Erythromycin esterase; InterPro IPR013096; KEGG: rxy:Rxyl_0884 cupin 2, barrel; PFAM: Cupin 2, conserved barrel; SPTR: Cupin 2 conserved barrel domain protein; erythromycin esterase complement(4422345..4423655) Runella slithyformis DSM 19594 10872374 YP_004657327.1 CDS Runsl_3837 NC_015703.1 4423827 4424384 R PFAM: Cupin domain; cupin complement(4423827..4424384) Runella slithyformis DSM 19594 10872375 YP_004657328.1 CDS Runsl_3838 NC_015703.1 4424420 4424707 R KEGG: nhl:Nhal_3969 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4424420..4424707) Runella slithyformis DSM 19594 10872376 YP_004657329.1 CDS Runsl_3839 NC_015703.1 4424713 4425048 R InterPro IPR018306; KEGG: dol:Dole_0905 restriction enzyme; PFAM: helicase A859L; SPTR: restriction enzyme; hypothetical protein complement(4424713..4425048) Runella slithyformis DSM 19594 10872377 YP_004657330.1 CDS Runsl_3840 NC_015703.1 4425050 4427791 R PFAM: T5orf172 domain; InterPro IPR011639; KEGG: atm:ANT_31690 hypothetical protein; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: uncharacterized protein; helicase A859L complement(4425050..4427791) Runella slithyformis DSM 19594 10872378 YP_004657331.1 CDS Runsl_3841 NC_015703.1 4427772 4429292 R PFAM: Eco57I restriction endonuclease; KEGG: dol:Dole_0903 type III restriction system methylase; SPTR: Type III restriction system methylase; adenine-specific DNA methyltransferase complement(4427772..4429292) Runella slithyformis DSM 19594 10872379 YP_004657332.1 CDS Runsl_3842 NC_015703.1 4429273 4429944 R InterPro IPR010394; KEGG: sli:Slin_5585 5'-nucleotidase; PFAM: 5-nucleotidase; PRIAM: 5'-nucleotidase; SPTR: 5'-nucleotidase; type III restriction system methylase complement(4429273..4429944) Runella slithyformis DSM 19594 10872380 YP_004657333.1 CDS Runsl_3843 NC_015703.1 4429922 4430881 R PFAM: 5'-nucleotidase; COGs: COG3324 protein related to lactoylglutathione lyase; InterPro IPR004360; KEGG: gvi:glr1565 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase; 5'-nucleotidase complement(4429922..4430881) Runella slithyformis DSM 19594 10872381 YP_004657334.1 CDS Runsl_3844 NC_015703.1 4431185 4431673 R PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG2958 conserved hypothetical protein; InterPro IPR007468; KEGG: cch:Cag_1717 hypothetical protein; PFAM: Protein of unknown function DUF511; SPTR: uncharacterized protein; Glyoxalase/bleomycin resistance protein/dioxygenase complement(4431185..4431673) Runella slithyformis DSM 19594 10872382 YP_004657335.1 CDS Runsl_3845 NC_015703.1 4431885 4432802 R PFAM: Protein of unknown function (DUF511); InterPro IPR001387; KEGG: dfe:Dfer_2636 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; hypothetical protein complement(4431885..4432802) Runella slithyformis DSM 19594 10872383 YP_004657336.1 CDS Runsl_3846 NC_015703.1 4432927 4434423 R PFAM: Helix-turn-helix; COGs: COG0146 N-methylhydantoinase B/acetone carboxylase alpha subunit; InterPro IPR008040:IPR002821:IPR003692; KEGG: dfe:Dfer_4282 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase; Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal; PRIAM: 5-oxoprolinase (ATP-hydrolyzing); SPTR: 5-oxoprolinase (ATP-hydrolyzing); helix-turn-helix domain-containing protein complement(4432927..4434423) Runella slithyformis DSM 19594 10872384 YP_004657337.1 CDS Runsl_3847 NC_015703.1 4434480 4438220 R PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinase/oxoprolinase N-terminal region; InterPro IPR019860; KEGG: sli:Slin_6627 gliding motility-associated ABC transporter permease GldF; SPTR: Gliding motility-associated ABC transporter permease GldF; TIGRFAM: Gliding motility-associated ABC transporter permease GldF; 5-oxoprolinase complement(4434480..4438220) Runella slithyformis DSM 19594 10872385 YP_004657338.1 CDS Runsl_3848 NC_015703.1 4438329 4439057 R TIGRFAM: gliding motility-associated ABC transporter permease GldF; KEGG: dfe:Dfer_4469 hypothetical protein; SPTR: uncharacterized protein; gliding motility-associated ABC transporter permease GldF complement(4438329..4439057) Runella slithyformis DSM 19594 10872386 YP_004657339.1 CDS Runsl_3849 NC_015703.1 4439102 4439620 R COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_4049 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; hypothetical protein complement(4439102..4439620) Runella slithyformis DSM 19594 10872387 YP_004657340.1 CDS Runsl_3850 NC_015703.1 4439746 4440480 R PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter; COGs: COG0608 Single-stranded DNA-specific exonuclease; InterPro IPR004610:IPR001667:IPR003156; KEGG: dfe:Dfer_4050 single-stranded-DNA-specific exonuclease RecJ; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; SPTR: Single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; sulfate-transporting ATPase complement(4439746..4440480) Runella slithyformis DSM 19594 10872388 YP_004657341.1 CDS Runsl_3851 NC_015703.1 4440587 4442332 R PFAM: DHH family; DHHA1 domain; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; COGs: COG1748 Saccharopine dehydrogenase and related protein; InterPro IPR005097; KEGG: dfe:Dfer_5033 saccharopine dehydrogenase; PFAM: Saccharopine dehydrogenase; SPTR: Saccharopine dehydrogenase; single-stranded-DNA-specific exonuclease RecJ complement(4440587..4442332) Runella slithyformis DSM 19594 10872389 YP_004657342.1 CDS Runsl_3852 NC_015703.1 4442711 4443772 D PFAM: Saccharopine dehydrogenase; InterPro IPR008000; KEGG: sli:Slin_0311 hypothetical protein; PFAM: Rhamnose mutarotase; SPTR: uncharacterized protein; saccharopine dehydrogenase 4442711..4443772 Runella slithyformis DSM 19594 10872390 YP_004657343.1 CDS Runsl_3853 NC_015703.1 4443816 4444148 R PFAM: Domain of unknown function (DUF718); KEGG: sli:Slin_2214 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4443816..4444148) Runella slithyformis DSM 19594 10872391 YP_004657344.1 CDS Runsl_3854 NC_015703.1 4444337 4444930 R InterPro IPR012489; KEGG: sli:Slin_2215 nuclease A inhibitor; PFAM: Nuclease A inhibitor-like; SPTR: Nuclease A inhibitor family protein; hypothetical protein complement(4444337..4444930) Runella slithyformis DSM 19594 10872392 YP_004657345.1 CDS Runsl_3855 NC_015703.1 4444980 4445435 D PFAM: Nuclease A inhibitor-like protein; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: fbc:FB2170_10611 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; PRIAM: Aldehyde dehydrogenase (NADP(+)); SPTR: Aldehyde dehydrogenase; Nuclease A inhibitor family protein 4444980..4445435 Runella slithyformis DSM 19594 10872393 YP_004657346.1 CDS Runsl_3856 NC_015703.1 4445481 4446959 D PFAM: Aldehyde dehydrogenase; aldehyde dehydrogenase 4445481..4446959 Runella slithyformis DSM 19594 10872394 YP_004657347.1 CDS Runsl_3857 NC_015703.1 4446956 4447372 R KEGG: sli:Slin_5814 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4446956..4447372) Runella slithyformis DSM 19594 10872395 YP_004657348.1 CDS Runsl_3858 NC_015703.1 4447381 4447779 R KEGG: sli:Slin_1358 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4447381..4447779) Runella slithyformis DSM 19594 10872396 YP_004657349.1 CDS Runsl_3859 NC_015703.1 4447860 4448717 D manually curated; hypothetical protein 4447860..4448717 Runella slithyformis DSM 19594 10872397 YP_004657350.1 CDS Runsl_3861 NC_015703.1 4449987 4457285 D PFAM: Cna protein B-type domain; KEGG: sli:Slin_1897 hypothetical protein; SPTR: uncharacterized protein; Cna B domain-containing protein 4449987..4457285 Runella slithyformis DSM 19594 10872399 YP_004657351.1 CDS Runsl_3862 NC_015703.1 4457415 4458437 R COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: sli:Slin_3201 cell cycle protein; PFAM: Cell cycle protein; SPTR: Cell cycle protein; hypothetical protein complement(4457415..4458437) Runella slithyformis DSM 19594 10872400 YP_004657352.1 CDS Runsl_3863 NC_015703.1 4458502 4459785 R PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR017790:IPR005311:IPR001460; KEGG: dfe:Dfer_2015 penicillin-binding protein 2; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Penicillin-binding protein 2; TIGRFAM: Penicillin-binding protein 2; cell cycle protein complement(4458502..4459785) Runella slithyformis DSM 19594 10872401 YP_004657353.1 CDS Runsl_3864 NC_015703.1 4459881 4461797 R PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2; COGs: COG3386 Gluconolactonase; InterPro IPR013658; KEGG: dfe:Dfer_2426 gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region; PRIAM: Gluconolactonase; SPTR: Gluconolactonase; penicillin-binding protein 2 complement(4459881..4461797) Runella slithyformis DSM 19594 10872402 YP_004657354.1 CDS Runsl_3865 NC_015703.1 4461982 4462992 R PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: sli:Slin_3605 lipoprotein; SPTR: lipoprotein; gluconolactonase complement(4461982..4462992) Runella slithyformis DSM 19594 10872403 YP_004657355.1 CDS Runsl_3866 NC_015703.1 4463140 4463916 R COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR010231:IPR000825; KEGG: dfe:Dfer_2575 cysteine desulfurase activator complex subunit SufB; PFAM: SUF system FeS cluster assembly, SufBD; SPTR: FeS assembly protein SufB; TIGRFAM: SUF system FeS cluster assembly, SufB; lipoprotein complement(4463140..4463916) Runella slithyformis DSM 19594 10872404 YP_004657356.1 CDS Runsl_3867 NC_015703.1 4464435 4465880 D PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB; COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR010046:IPR006656:IPR006657; KEGG: dfe:Dfer_2667 oxidoreductase alpha (molybdopterin) subunit; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding region; PRIAM: Nitrate reductase; SPTR: Oxidoreductase alpha (Molybdopterin) subunit; TIGRFAM: Oxidoreductase alpha (molybdopterin) subunit; FeS assembly protein SufB 4464435..4465880 Runella slithyformis DSM 19594 10872405 YP_004657357.1 CDS Runsl_3868 NC_015703.1 4465983 4468283 D PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; InterPro IPR008009:IPR006644; KEGG: dfe:Dfer_3550 dystroglycan-type cadherin domain protein; PFAM: Ig; SMART: Dystroglycan-type cadherin-like; SPTR: Dystroglycan-type cadherin domain protein; oxidoreductase alpha (molybdopterin) subunit 4465983..4468283 Runella slithyformis DSM 19594 10872406 YP_004657358.1 CDS Runsl_3869 NC_015703.1 4468533 4472279 D PFAM: Beta-galactosidase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: dfe:Dfer_4066 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; Ig family protein 4468533..4472279 Runella slithyformis DSM 19594 10872407 YP_004657359.1 CDS Runsl_3870 NC_015703.1 4472355 4473701 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: dfe:Dfer_4067 protein of unknown function DUF323; PFAM: Sulphatase-modifying factor; SPTR: uncharacterized protein; oxidoreductase domain-containing protein complement(4472355..4473701) Runella slithyformis DSM 19594 10872408 YP_004657360.1 CDS Runsl_3871 NC_015703.1 4473868 4474854 R PFAM: Formylglycine-generating sulfatase enzyme; KEGG: sli:Slin_5366 hypothetical protein; SPTR: uncharacterized protein; sulfatase-modifying factor protein complement(4473868..4474854) Runella slithyformis DSM 19594 10872409 YP_004657361.1 CDS Runsl_3872 NC_015703.1 4474924 4476591 R COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: sli:Slin_5365 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; hypothetical protein complement(4474924..4476591) Runella slithyformis DSM 19594 10872410 YP_004657362.1 CDS Runsl_3873 NC_015703.1 4476628 4477404 R PFAM: ABC transporter; COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR003953; KEGG: psn:Pedsa_1775 FAD dependent oxidoreductase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; SPTR: FAD dependent oxidoreductase; ABC transporter complement(4476628..4477404) Runella slithyformis DSM 19594 10872411 YP_004657363.1 CDS Runsl_3874 NC_015703.1 4477404 4478519 R PFAM: FAD binding domain; COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: dfe:Dfer_2887 glucose/sorbosone dehydrogenase-like protein; SPTR: Glucose/sorbosone dehydrogenase-like protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein complement(4477404..4478519) Runella slithyformis DSM 19594 10872412 YP_004657364.1 CDS Runsl_3875 NC_015703.1 4478684 4479874 D PFAM: Glucose / Sorbosone dehydrogenase; COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006158:IPR005129:IPR006099; KEGG: sli:Slin_2256 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding; ArgK protein; PRIAM: Methylmalonyl-CoA mutase; SPTR: Methylmalonyl-CoA mutase; glucose/sorbosone dehydrogenase-like protein 4478684..4479874 Runella slithyformis DSM 19594 10872413 YP_004657365.1 CDS Runsl_3876 NC_015703.1 4479929 4483357 D PFAM: ArgK protein; Methylmalonyl-CoA mutase; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase C-terminal domain; COGs: COG0858 Ribosome-binding factor A; HAMAP: Ribosome-binding factor A; InterPro IPR000238; KEGG: sli:Slin_0998 ribosome-binding factor A; PFAM: Ribosome-binding factor A; SPTR: Ribosome-binding factor A; TIGRFAM: Ribosome-binding factor A; methylmalonyl-CoA mutase 4479929..4483357 Runella slithyformis DSM 19594 10872414 YP_004657366.1 CDS Runsl_3877 NC_015703.1 4483658 4484035 D PFAM: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; COGs: COG0077 Prephenate dehydratase; InterPro IPR010957:IPR020822:IPR001086:IPR002912; KEGG: lby:Lbys_0057 chorismate mutase; prephenate dehydratase; PFAM: Prephenate dehydratase; Chorismate mutase, type II; Amino acid-binding ACT; SPTR: Chorismate mutase; prephenate dehydratase; TIGRFAM: Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain; ribosome-binding factor A 4483658..4484035 Runella slithyformis DSM 19594 10872415 YP_004657367.1 CDS Runsl_3878 NC_015703.1 4484120 4485193 D PFAM: Prephenate dehydratase; Chorismate mutase type II; ACT domain; TIGRFAM: chorismate mutase domain of proteobacterial P-protein, clade 2; COGs: COG0073 EMAP domain; InterPro IPR008231:IPR002547; KEGG: shg:Sph21_1068 export-related chaperone CsaA; PFAM: tRNA-binding region; SPTR: Export-related chaperone CsaA; TIGRFAM: Secretion chaperone CsaA; chorismate mutase 4484120..4485193 Runella slithyformis DSM 19594 10872416 YP_004657368.1 CDS Runsl_3879 NC_015703.1 4485226 4485561 D PFAM: tRNA binding domain; TIGRFAM: export-related chaperone CsaA; COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015883; KEGG: sli:Slin_4336 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Beta-N-acetylhexosaminidase; export-related chaperone CsaA 4485226..4485561 Runella slithyformis DSM 19594 10872417 YP_004657369.1 CDS Runsl_3880 NC_015703.1 4485597 4487261 D PFAM: Glycosyl hydrolase 20, catalytic domain; KEGG: dfe:Dfer_2584 hypothetical protein; SPTR: uncharacterized protein; beta-N-acetylhexosaminidase 4485597..4487261 Runella slithyformis DSM 19594 10872418 YP_004657370.1 CDS Runsl_3881 NC_015703.1 4487345 4488826 D Bacterial RNase P class A as predicted by Rfam (RF00010), score 236.30; hypothetical protein 4487345..4488826 Runella slithyformis DSM 19594 10872419 YP_004657371.1 CDS Runsl_3882 NC_015703.1 4489391 4490956 D PFAM: OmpA family; COGs: COG4188 dienelactone hydrolase; KEGG: sli:Slin_3493 dienelactone hydrolase-like protein; SPTR: Dienelactone hydrolase-like protein; OmpA/MotB domain-containing protein 4489391..4490956 Runella slithyformis DSM 19594 10872421 YP_004657372.1 CDS Runsl_3883 NC_015703.1 4491209 4492495 R PFAM: isoform II; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_6424 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; dienelactone hydrolase-like protein complement(4491209..4492495) Runella slithyformis DSM 19594 10872422 YP_004657373.1 CDS Runsl_3884 NC_015703.1 4492705 4493430 R PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_6424 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; LytTR family two component transcriptional regulator complement(4492705..4493430) Runella slithyformis DSM 19594 10872423 YP_004657374.1 CDS Runsl_3885 NC_015703.1 4494162 4494887 R PFAM: Response regulator receiver domain; LytTr DNA-binding domain; KEGG: sli:Slin_5589 phage repressor; SPTR: phage repressor; LytTR family two component transcriptional regulator complement(4494162..4494887) Runella slithyformis DSM 19594 10872424 YP_004657375.1 CDS Runsl_3886 NC_015703.1 4495605 4496276 R phage repressor complement(4495605..4496276) Runella slithyformis DSM 19594 10872425 YP_004657376.1 CDS Runsl_3887 NC_015703.1 4496396 4496719 D InterPro IPR010093; TIGRFAM: Excisionase/Xis, DNA-binding; hypothetical protein 4496396..4496719 Runella slithyformis DSM 19594 10872426 YP_004657377.1 CDS Runsl_3888 NC_015703.1 4496688 4496975 D TIGRFAM: DNA binding domain, excisionase; excisionase 4496688..4496975 Runella slithyformis DSM 19594 10872427 YP_004657378.1 CDS Runsl_3889 NC_015703.1 4496953 4497783 D KEGG: fps:FP0626 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4496953..4497783 Runella slithyformis DSM 19594 10872428 YP_004657379.1 CDS Runsl_3890 NC_015703.1 4497780 4498157 D Prodigal; manually curated; hypothetical protein 4497780..4498157 Runella slithyformis DSM 19594 10872429 YP_004657380.1 CDS Runsl_3892 NC_015703.1 4498610 4498921 D COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR004546:IPR003356:IPR000055; KEGG: ana:alr0499 type I site-specific deoxyribonuclease; PFAM: DNA methylase, adenine-specific; Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Type I site-specific deoxyribonuclease; TIGRFAM: Restriction endonuclease, type I, EcoRI, M subunit; hypothetical protein 4498610..4498921 Runella slithyformis DSM 19594 10872431 YP_004657381.1 CDS Runsl_3893 NC_015703.1 4499204 4501405 D PFAM: N-6 DNA Methylase; Type I restriction modification DNA specificity domain; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM); COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR004473:IPR007409:IPR006935:IPR014001; KEGG: dfe:Dfer_5242 type I site-specific deoxyribonuclease, HsdR family; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; PRIAM: Type I site-specific deoxyribonuclease; SMART: DEAD-like helicase, N-terminal; SPTR: Type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; type I restriction-modification system, M subunit 4499204..4501405 Runella slithyformis DSM 19594 10872432 YP_004657382.1 CDS Runsl_3894 NC_015703.1 4501508 4504345 D PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type I restriction and modification enzyme - subunit R C terminal; Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; KEGG: sun:SUN_2300 hypothetical protein; SPTR: uncharacterized protein; HsdR family type I site-specific deoxyribonuclease 4501508..4504345 Runella slithyformis DSM 19594 10872433 YP_004657383.1 CDS Runsl_3895 NC_015703.1 4505678 4506070 R PFAM: Protein of unknown function (DUF2493); hypothetical protein complement(4505678..4506070) Runella slithyformis DSM 19594 10872434 YP_004657384.1 CDS Runsl_3896 NC_015703.1 4506260 4506520 D hypothetical protein 4506260..4506520 Runella slithyformis DSM 19594 10872435 YP_004657385.1 CDS Runsl_3897 NC_015703.1 4506517 4506753 D InterPro IPR014944; PFAM: Protein of unknown function DUF1813, HSP20-like; hypothetical protein 4506517..4506753 Runella slithyformis DSM 19594 10872436 YP_004657386.1 CDS Runsl_3898 NC_015703.1 4506737 4506913 D PFAM: HSP20-like domain of unknown function (DUF1813); KEGG: sli:Slin_4186 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4506737..4506913 Runella slithyformis DSM 19594 10872437 YP_004657387.1 CDS Runsl_3899 NC_015703.1 4506980 4507594 D hypothetical protein 4506980..4507594 Runella slithyformis DSM 19594 10872438 YP_004657388.1 CDS Runsl_3900 NC_015703.1 4507599 4507766 D hypothetical protein 4507599..4507766 Runella slithyformis DSM 19594 10872439 YP_004657389.1 CDS Runsl_3901 NC_015703.1 4507822 4508076 D KEGG: sli:Slin_6908 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4507822..4508076 Runella slithyformis DSM 19594 10872440 YP_004657390.1 CDS Runsl_3902 NC_015703.1 4508101 4508751 D hypothetical protein 4508101..4508751 Runella slithyformis DSM 19594 10872441 YP_004657391.1 CDS Runsl_3903 NC_015703.1 4508921 4509313 D hypothetical protein 4508921..4509313 Runella slithyformis DSM 19594 10872442 YP_004657392.1 CDS Runsl_3904 NC_015703.1 4509310 4509579 D KEGG: fjo:Fjoh_3184 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4509310..4509579 Runella slithyformis DSM 19594 10872443 YP_004657393.1 CDS Runsl_3905 NC_015703.1 4511613 4512347 R COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: fjo:Fjoh_2324 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Helix-turn-helix-domain containing protein, AraC type; manually curated; hypothetical protein complement(4511613..4512347) Runella slithyformis DSM 19594 10872444 YP_004657394.1 CDS Runsl_3906 NC_015703.1 4512600 4513517 R PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: cpi:Cpin_0969 hypothetical protein; SPTR: uncharacterized protein; AraC family transcriptional regulator complement(4512600..4513517) Runella slithyformis DSM 19594 10872445 YP_004657395.1 CDS Runsl_3907 NC_015703.1 4513595 4513963 R COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: ana:alr1722 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Alr1722 protein; hypothetical protein complement(4513595..4513963) Runella slithyformis DSM 19594 10872446 YP_004657396.1 CDS Runsl_3908 NC_015703.1 4513965 4514888 R PFAM: short chain dehydrogenase; KEGG: amr:AM1_D0068 hypothetical protein; SPTR: uncharacterized protein; short-chain dehydrogenase/reductase SDR complement(4513965..4514888) Runella slithyformis DSM 19594 10872447 YP_004657397.1 CDS Runsl_3909 NC_015703.1 4515274 4516110 R hypothetical protein complement(4515274..4516110) Runella slithyformis DSM 19594 10872448 YP_004657398.1 CDS Runsl_3910 NC_015703.1 4516211 4516462 D COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase); InterPro IPR019759; KEGG: chu:CHU_3076 SOS mutagenesis protein UmuD; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: SOS response UmuD protein, Serine peptidase, MEROPS family S24; hypothetical protein 4516211..4516462 Runella slithyformis DSM 19594 10872449 YP_004657399.1 CDS Runsl_3911 NC_015703.1 4516530 4516979 D PFAM: Peptidase S24-like; COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; InterPro IPR001126; KEGG: ppn:Palpr_2947 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like; PRIAM: DNA-directed DNA polymerase; SPTR: DNA-directed DNA polymerase; peptidase S24/S26A/S26B, conserved region 4516530..4516979 Runella slithyformis DSM 19594 10872450 YP_004657400.1 CDS Runsl_3912 NC_015703.1 4516981 4518249 D PFAM: impB/mucB/samB family C-terminal; impB/mucB/samB family; KEGG: aae:aq_561 recombination protein RecN; DNA-directed DNA polymerase 4516981..4518249 Runella slithyformis DSM 19594 10872451 YP_004657401.1 CDS Runsl_3913 NC_015703.1 4518339 4519049 R KEGG: chu:CHU_0033 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4518339..4519049) Runella slithyformis DSM 19594 10872452 YP_004657402.1 CDS Runsl_3914 NC_015703.1 4519243 4521459 R hypothetical protein complement(4519243..4521459) Runella slithyformis DSM 19594 10872453 YP_004657403.1 CDS Runsl_3915 NC_015703.1 4521558 4521653 D hypothetical protein 4521558..4521653 Runella slithyformis DSM 19594 10872454 YP_004657404.1 CDS Runsl_3916 NC_015703.1 4521623 4521913 R COGs: COG1988 membrane-bound metal-dependent hydrolase; InterPro IPR007404; KEGG: gca:Galf_0876 membrane-bound metal-dependent hydrolase; PFAM: Protein of unknown function DUF457, transmembrane; SPTR: uncharacterized protein; hypothetical protein complement(4521623..4521913) Runella slithyformis DSM 19594 10872455 YP_004657405.1 CDS Runsl_3917 NC_015703.1 4521996 4523252 D PFAM: Predicted membrane-bound metal-dependent hydrolase (DUF457); COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104:IPR011579; KEGG: sgy:Sgly_2273 tyrosine recombinase XerC; PFAM: Integrase, catalytic core, phage; ATPase domain, prokaryote; SPTR: Tyrosine recombinase xerC 2; hypothetical protein 4521996..4523252 Runella slithyformis DSM 19594 10872456 YP_004657406.1 CDS Runsl_3918 NC_015703.1 4523236 4524756 D PFAM: Phage integrase; COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119:IPR006120; KEGG: sli:Slin_4835 resolvase; PFAM: Resolvase, N-terminal; Resolvase, helix-turn-helix region; SPTR: Resolvase domain protein; integrase 4523236..4524756 Runella slithyformis DSM 19594 10872457 YP_004657407.1 CDS Runsl_3919 NC_015703.1 4524905 4525483 D PFAM: Resolvase, N terminal domain; Helix-turn-helix domain of resolvase; resolvase domain-containing protein 4524905..4525483 Runella slithyformis DSM 19594 10872458 YP_004657408.1 CDS Runsl_3920 NC_015703.1 4525503 4525769 D hypothetical protein 4525503..4525769 Runella slithyformis DSM 19594 10872459 YP_004657409.1 CDS Runsl_3921 NC_015703.1 4525869 4526633 D SPTR: Phage integrase; manually curated; hypothetical protein 4525869..4526633 Runella slithyformis DSM 19594 10872460 YP_004657410.1 CDS Runsl_3923 NC_015703.1 4528194 4529069 R PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; COGs: COG3011 conserved hypothetical protein; InterPro IPR007263; KEGG: chu:CHU_2470 hypothetical protein; PFAM: thiol-disulphide oxidoreductase DCC; SPTR: uncharacterized protein; malonyl CoA-ACP transacylase complement(4528194..4529069) Runella slithyformis DSM 19594 10872463 YP_004657411.1 CDS Runsl_3924 NC_015703.1 4529131 4529526 R PFAM: Protein of unknown function, DUF393; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: sli:Slin_3597 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23; manually curated; thiol-disulfide oxidoreductase complement(4529131..4529526) Runella slithyformis DSM 19594 10872464 YP_004657412.1 CDS Runsl_3925 NC_015703.1 4529730 4530410 D PFAM: Peptidase M23; COGs: COG2996 conserved hypothetical protein; KEGG: bsa:Bacsa_3338 hypothetical protein; SPTR: uncharacterized protein; peptidase M23 4529730..4530410 Runella slithyformis DSM 19594 10872465 YP_004657413.1 CDS Runsl_3926 NC_015703.1 4530552 4531391 D InterPro IPR006311:IPR006076; KEGG: dfe:Dfer_4743 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase; hypothetical protein 4530552..4531391 Runella slithyformis DSM 19594 10872466 YP_004657414.1 CDS Runsl_3927 NC_015703.1 4531578 4532726 R PFAM: FAD dependent oxidoreductase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; InterPro IPR006175; KEGG: gym:GYMC10_0704 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP; FAD dependent oxidoreductase complement(4531578..4532726) Runella slithyformis DSM 19594 10872467 YP_004657415.1 CDS Runsl_3928 NC_015703.1 4532906 4533397 D PFAM: Endoribonuclease L-PSP; COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR011650; KEGG: sli:Slin_4763 amidohydrolase; PFAM: Peptidase M20, dimerisation; SPTR: Amidohydrolase; endoribonuclease L-PSP 4532906..4533397 Runella slithyformis DSM 19594 10872468 YP_004657416.1 CDS Runsl_3929 NC_015703.1 4533486 4535162 R PFAM: Peptidase dimerisation domain; TIGRFAM: amidohydrolase; COGs: COG2610 H+/gluconate symporter and related permease; InterPro IPR003474; KEGG: dfe:Dfer_1028 gluconate transporter; PFAM: Gluconate transporter; SPTR: Gluconate transporter; TIGRFAM: Gluconate transporter; peptidase dimerization domain-containing protein complement(4533486..4535162) Runella slithyformis DSM 19594 10872469 YP_004657417.1 CDS Runsl_3930 NC_015703.1 4535212 4536528 R PFAM: GntP family permease; TIGRFAM: gluconate transporter; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: sli:Slin_1134 periplasmic binding protein; PFAM: Periplasmic binding protein; SPTR: Periplasmic binding protein; gluconate transporter complement(4535212..4536528) Runella slithyformis DSM 19594 10872470 YP_004657418.1 CDS Runsl_3931 NC_015703.1 4536641 4537429 R PFAM: Periplasmic binding protein; KEGG: sli:Slin_4922 hypothetical protein; SPTR: uncharacterized protein; ABC transporter substrate-binding protein complement(4536641..4537429) Runella slithyformis DSM 19594 10872471 YP_004657419.1 CDS Runsl_3932 NC_015703.1 4537441 4538919 R KEGG: rba:RB9620 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4537441..4538919) Runella slithyformis DSM 19594 10872472 YP_004657420.1 CDS Runsl_3933 NC_015703.1 4539077 4540228 D manually curated; hypothetical protein 4539077..4540228 Runella slithyformis DSM 19594 10872473 YP_004657421.1 CDS Runsl_3935 NC_015703.1 4541461 4542480 D PFAM: Bacterial sugar transferase; KEGG: ppn:Palpr_1085 hypothetical protein; SPTR: uncharacterized protein; sugar transferase 4541461..4542480 Runella slithyformis DSM 19594 10872475 YP_004657422.1 CDS Runsl_3936 NC_015703.1 4542547 4543632 R KEGG: dfe:Dfer_4003 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4542547..4543632) Runella slithyformis DSM 19594 10872476 YP_004657423.1 CDS Runsl_3937 NC_015703.1 4543747 4545147 R KEGG: sli:Slin_4924 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4543747..4545147) Runella slithyformis DSM 19594 10872477 YP_004657424.1 CDS Runsl_3938 NC_015703.1 4545322 4546767 D SPTR: uncharacterized protein; hypothetical protein 4545322..4546767 Runella slithyformis DSM 19594 10872478 YP_004657425.1 CDS Runsl_3939 NC_015703.1 4547110 4547517 D KEGG: bvu:BVU_2900 transposase; SPTR: uncharacterized protein; hypothetical protein 4547110..4547517 Runella slithyformis DSM 19594 10872479 YP_004657426.1 CDS Runsl_3940 NC_015703.1 4547569 4548975 D PFAM: Transposase domain (DUF772); InterPro IPR003346; KEGG: sli:Slin_6004 transposase IS116/IS110/IS902 family protein; PFAM: Transposase, IS116/IS110/IS902; SPTR: Transposase IS116/IS110/IS902 family protein; transposase 4547569..4548975 Runella slithyformis DSM 19594 10872480 YP_004657427.1 CDS Runsl_3941 NC_015703.1 4549670 4550680 D PFAM: Transposase IS116/IS110/IS902 family; Transposase; manually curated; transposase IS116/IS110/IS902 family protein 4549670..4550680 Runella slithyformis DSM 19594 10872481 YP_004657428.1 CDS Runsl_3943 NC_015703.1 4551215 4551991 R PFAM: Glycosyl transferase 2; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sfu:Sfum_0790 group 1 glycosyl transferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1; family 2 glycosyl transferase complement(4551215..4551991) Runella slithyformis DSM 19594 10872483 YP_004657429.1 CDS Runsl_3944 NC_015703.1 4551939 4553102 R PFAM: Glycosyl transferases group 1; InterPro IPR006342; KEGG: ava:Ava_1042 methyltransferase FkbM; SPTR: Methyltransferase FkbM; TIGRFAM: Methyltransferase FkbM; group 1 glycosyl transferase complement(4551939..4553102) Runella slithyformis DSM 19594 10872484 YP_004657430.1 CDS Runsl_3945 NC_015703.1 4553102 4553803 R TIGRFAM: methyltransferase, FkbM family; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: cpi:Cpin_4756 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; FkbM family methyltransferase complement(4553102..4553803) Runella slithyformis DSM 19594 10872485 YP_004657431.1 CDS Runsl_3946 NC_015703.1 4553805 4554959 R PFAM: Glycosyl transferases group 1; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: rle:RL0822 DegT family aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: Pleiotropic regulatory protein; group 1 glycosyl transferase complement(4553805..4554959) Runella slithyformis DSM 19594 10872486 YP_004657432.1 CDS Runsl_3947 NC_015703.1 4554966 4556081 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; glutamine--scyllo-inositol transaminase complement(4554966..4556081) Runella slithyformis DSM 19594 10872487 YP_004657433.1 CDS Runsl_3948 NC_015703.1 4556203 4556301 D InterPro IPR020022:IPR011063; KEGG: mmp:MMP1081 LPS biosynthesis protein WbpG; PFAM: PP-loop; SPTR: LPS biosynthesis protein WbpG; TIGRFAM: N-acetyl sugar amidotransferase; hypothetical protein 4556203..4556301 Runella slithyformis DSM 19594 10872488 YP_004657434.1 CDS Runsl_3949 NC_015703.1 4556271 4557398 R PFAM: ExsB; TIGRFAM: N-acetyl sugar amidotransferase; COGs: COG0107 Imidazoleglycerol-phosphate synthase; InterPro IPR006062; KEGG: abu:Abu_0690 imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: Histidine biosynthesis; SPTR: Imidazoleglycerol phosphate synthase, cyclase subunit; N-acetyl sugar amidotransferase complement(4556271..4557398) Runella slithyformis DSM 19594 10872489 YP_004657435.1 CDS Runsl_3950 NC_015703.1 4557410 4558168 R PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; COGs: COG0118 Glutamine amidotransferase; HAMAP: Imidazole glycerol phosphate synthase, subunit H; InterPro IPR010139:IPR000991; KEGG: geb:GM18_1442 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: Glutamine amidotransferase class-I, C-terminal; SPTR: Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; histidine biosynthesis protein complement(4557410..4558168) Runella slithyformis DSM 19594 10872490 YP_004657436.1 CDS Runsl_3951 NC_015703.1 4558222 4558845 R PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; KEGG: ppy:PPE_01146 hypothetical protein; SPTR: uncharacterized protein; imidazole glycerol phosphate synthase subunit HisH complement(4558222..4558845) Runella slithyformis DSM 19594 10872491 YP_004657437.1 CDS Runsl_3952 NC_015703.1 4558859 4560073 R InterPro IPR006342; KEGG: pmc:P9515_13901 hypothetical protein; SPTR: Methyltransferase FkbM family; TIGRFAM: Methyltransferase FkbM; hypothetical protein complement(4558859..4560073) Runella slithyformis DSM 19594 10872492 YP_004657438.1 CDS Runsl_3953 NC_015703.1 4560107 4560985 R InterPro IPR002797; KEGG: bpi:BPLAN_034 polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; SPTR: Probable lipopolysaccharide biosynthesis protein; FkbM family methyltransferase complement(4560107..4560985) Runella slithyformis DSM 19594 10872493 YP_004657439.1 CDS Runsl_3954 NC_015703.1 4560978 4562138 R PFAM: Polysaccharide biosynthesis protein; COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: mgm:Mmc1_2423 acetyltransferase; PFAM: Bacterial transferase hexapeptide repeat; SPTR: Acetyltransferase; polysaccharide biosynthesis protein complement(4560978..4562138) Runella slithyformis DSM 19594 10872494 YP_004657440.1 CDS Runsl_3955 NC_015703.1 4562273 4562737 R PFAM: Bacterial transferase hexapeptide (three repeats); COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: mgm:Mmc1_2424 oxidoreductase domain-containing protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein; transferase hexapeptide repeat containing protein complement(4562273..4562737) Runella slithyformis DSM 19594 10872495 YP_004657441.1 CDS Runsl_3956 NC_015703.1 4562746 4563762 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; KEGG: ajs:Ajs_3024 hypothetical protein; SPTR: uncharacterized protein; oxidoreductase domain-containing protein complement(4562746..4563762) Runella slithyformis DSM 19594 10872496 YP_004657442.1 CDS Runsl_3957 NC_015703.1 4563776 4565059 R PFAM: O-Antigen ligase; InterPro IPR003856; KEGG: sli:Slin_4936 lipopolysaccharide biosynthesis protein; PFAM: Lipopolysaccharide biosynthesis; SPTR: Lipopolysaccharide biosynthesis protein; hypothetical protein complement(4563776..4565059) Runella slithyformis DSM 19594 10872497 YP_004657443.1 CDS Runsl_3958 NC_015703.1 4565386 4566453 R PFAM: Chain length determinant protein; COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715:IPR019554; KEGG: sli:Slin_4937 polysaccharide export protein; PFAM: Soluble ligand binding domain; Polysaccharide export protein; SPTR: Polysaccharide export protein; lipopolysaccharide biosynthesis protein complement(4565386..4566453) Runella slithyformis DSM 19594 10872498 YP_004657444.1 CDS Runsl_3959 NC_015703.1 4566512 4568845 R PFAM: SLBB-domain like (DUF1017); Polysaccharide biosynthesis/export protein; SLBB domain; COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: sli:Slin_6226 amino acid permease-associated region; PFAM: Amino acid permease-associated region; SPTR: Amino acid permease-associated region; soluble ligand binding domain-containing protein complement(4566512..4568845) Runella slithyformis DSM 19594 10872499 YP_004657445.1 CDS Runsl_3960 NC_015703.1 4569046 4570512 D PFAM: Amino acid permease; COGs: COG2270 Permease of the major facilitator superfamily; KEGG: dfe:Dfer_0030 permease; SPTR: Permease; amino acid permease 4569046..4570512 Runella slithyformis DSM 19594 10872500 YP_004657446.1 CDS Runsl_3961 NC_015703.1 4570524 4571831 D PFAM: Vacuole effluxer Atg22 like; permease 4570524..4571831 Runella slithyformis DSM 19594 10872501 YP_004657447.1 CDS Runsl_3962 NC_015703.1 4572226 4573632 R PFAM: Transposase domain (DUF772); KEGG: sli:Slin_2548 hypothetical protein; SPTR: uncharacterized protein; transposase complement(4572226..4573632) Runella slithyformis DSM 19594 10872503 YP_004657448.1 CDS Runsl_3963 NC_015703.1 4573746 4574744 R KEGG: dfe:Dfer_5099 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4573746..4574744) Runella slithyformis DSM 19594 10872504 YP_004657449.1 CDS Runsl_3964 NC_015703.1 4574794 4577520 R COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_5100 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; hypothetical protein complement(4574794..4577520) Runella slithyformis DSM 19594 10872505 YP_004657450.1 CDS Runsl_3965 NC_015703.1 4577591 4578337 R PFAM: Glycosyl transferase 2; COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: dfe:Dfer_5101 cyclic nucleotide-binding protein; PFAM: Acyltransferase 3; SPTR: Cyclic nucleotide-binding protein; family 2 glycosyl transferase complement(4577591..4578337) Runella slithyformis DSM 19594 10872506 YP_004657451.1 CDS Runsl_3966 NC_015703.1 4578480 4579625 R PFAM: Acyltransferase; KEGG: dfe:Dfer_5102 hypothetical protein; SPTR: uncharacterized protein; acyltransferase complement(4578480..4579625) Runella slithyformis DSM 19594 10872507 YP_004657452.1 CDS Runsl_3967 NC_015703.1 4579664 4581286 R COGs: COG3958 Transketolase C-terminal subunit; InterPro IPR005475; KEGG: dfe:Dfer_5103 transketolase central region; PFAM: Transketolase-like, pyrimidine-binding domain; SPTR: Transketolase central region; hypothetical protein complement(4579664..4581286) Runella slithyformis DSM 19594 10872508 YP_004657453.1 CDS Runsl_3968 NC_015703.1 4581286 4582230 R PFAM: Transketolase, pyrimidine binding domain; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR001173; KEGG: dfe:Dfer_5104 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Glycosyl transferase, family 2; SPTR: NAD-dependent epimerase/dehydratase; transketolase central region complement(4581286..4582230) Runella slithyformis DSM 19594 10872509 YP_004657454.1 CDS Runsl_3969 NC_015703.1 4582236 4584251 R PFAM: NAD dependent epimerase/dehydratase; Glycosyl transferase 2; KEGG: cow:Calow_0919 hypothetical protein; SPTR: uncharacterized protein; NAD-dependent epimerase/dehydratase complement(4582236..4584251) Runella slithyformis DSM 19594 10872510 YP_004657455.1 CDS Runsl_3970 NC_015703.1 4584261 4584653 R COGs: COG3959 Transketolase N-terminal subunit; InterPro IPR005474; KEGG: dfe:Dfer_5105 transketolase domain protein; PFAM: Transketolase, N-terminal; PRIAM: Transketolase; SPTR: Transketolase domain protein; hypothetical protein complement(4584261..4584653) Runella slithyformis DSM 19594 10872511 YP_004657456.1 CDS Runsl_3971 NC_015703.1 4584698 4585513 R PFAM: Transketolase, thiamine diphosphate binding domain; COGs: COG5305 membrane protein; InterPro IPR003342; KEGG: dfe:Dfer_5106 membrane protein-like protein; PFAM: Glycosyl transferase, family 39; SPTR: Membrane protein-like protein; transketolase complement(4584698..4585513) Runella slithyformis DSM 19594 10872512 YP_004657457.1 CDS Runsl_3972 NC_015703.1 4585513 4587279 R PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase; glycosyl transferase family protein complement(4585513..4587279) Runella slithyformis DSM 19594 10872513 YP_004657458.1 CDS Runsl_3973 NC_015703.1 4587414 4587626 D COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR002938:IPR000172; KEGG: dfe:Dfer_0230 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Monooxygenase, FAD-binding; SPTR: Glucose-methanol-choline oxidoreductase; hypothetical protein 4587414..4587626 Runella slithyformis DSM 19594 10872514 YP_004657459.1 CDS Runsl_3974 NC_015703.1 4587842 4589581 D PFAM: FAD binding domain; GMC oxidoreductase; InterPro IPR006311; KEGG: sli:Slin_2016 hypothetical protein; SPTR: uncharacterized protein; glucose-methanol-choline oxidoreductase 4587842..4589581 Runella slithyformis DSM 19594 10872515 YP_004657460.1 CDS Runsl_3975 NC_015703.1 4589618 4590244 D KEGG: cpi:Cpin_1738 PKD domain containing protein; SPTR: Fibronectin type III domain protein; hypothetical protein 4589618..4590244 Runella slithyformis DSM 19594 10872516 YP_004657461.1 CDS Runsl_3976 NC_015703.1 4590308 4591804 D COGs: COG1663 Tetraacyldisaccharide-1-P 4'-kinase; HAMAP: Tetraacyldisaccharide 4'-kinase; InterPro IPR003758; KEGG: sli:Slin_2019 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide 4'-kinase; PRIAM: Tetraacyldisaccharide 4'-kinase; SPTR: Tetraacyldisaccharide 4'-kinase; TIGRFAM: Tetraacyldisaccharide 4'-kinase; hypothetical protein 4590308..4591804 Runella slithyformis DSM 19594 10872517 YP_004657462.1 CDS Runsl_3977 NC_015703.1 4591773 4592828 R PFAM: Tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013342; KEGG: sli:Slin_2020 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; SPTR: Mandelate racemase/muconate lactonizing protein; tetraacyldisaccharide 4'-kinase complement(4591773..4592828) Runella slithyformis DSM 19594 10872518 YP_004657463.1 CDS Runsl_3978 NC_015703.1 4592907 4594016 D PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; TIGRFAM: o-succinylbenzoate synthase; COGs: COG2041 Sulfite oxidase; InterPro IPR000572; KEGG: cpi:Cpin_2409 oxidoreductase molybdopterin binding; PFAM: Oxidoreductase, molybdopterin binding; SPTR: Oxidoreductase molybdopterin binding; mandelate racemase 4592907..4594016 Runella slithyformis DSM 19594 10872519 YP_004657464.1 CDS Runsl_3979 NC_015703.1 4594122 4594814 D PFAM: Oxidoreductase molybdopterin binding domain; COGs: COG0260 Leucyl aminopeptidase; HAMAP: cytosol aminopeptidase; InterPro IPR000819; KEGG: sli:Slin_4525 leucyl aminopeptidase; PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; SPTR: Probable cytosol aminopeptidase; oxidoreductase molybdopterin binding protein 4594122..4594814 Runella slithyformis DSM 19594 10872520 YP_004657465.1 CDS Runsl_3980 NC_015703.1 4594900 4596348 D PFAM: Cytosol aminopeptidase, catalytic domain; Cytosol aminopeptidase, N-terminal domain; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR003367:IPR006665; KEGG: lby:Lbys_2206 thrombospondin type 3 repeat-containing protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Thrombospondin, type 3-like repeat; SPTR: Thrombospondin type 3 repeat-containing protein; cytosol aminopeptidase 4594900..4596348 Runella slithyformis DSM 19594 10872521 YP_004657466.1 CDS Runsl_3981 NC_015703.1 4596472 4598289 D PFAM: OmpA family; Thrombospondin type 3 repeat; KEGG: lby:Lbys_2206 thrombospondin type 3 repeat-containing protein; SPTR: Thrombospondin type 3 repeat-containing protein; OmpA/MotB domain-containing protein 4596472..4598289 Runella slithyformis DSM 19594 10872522 YP_004657467.1 CDS Runsl_3982 NC_015703.1 4598383 4599132 D InterPro IPR000537; KEGG: sli:Slin_2533 UbiA prenyltransferase; PFAM: UbiA prenyltransferase; SPTR: UbiA prenyltransferase; thrombospondin type 3 repeat-containing protein 4598383..4599132 Runella slithyformis DSM 19594 10872523 YP_004657468.1 CDS Runsl_3983 NC_015703.1 4599163 4600011 D PFAM: UbiA prenyltransferase; UbiA prenyltransferase 4599163..4600011 Runella slithyformis DSM 19594 10872524 YP_004657469.1 CDS Runsl_3984 NC_015703.1 4600431 4600934 D PFAM: HNH endonuclease; COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: cao:Celal_2798 transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase; HNH endonuclease 4600431..4600934 Runella slithyformis DSM 19594 10872526 YP_004657470.1 CDS Runsl_3985 NC_015703.1 4601233 4602216 R PFAM: Transposase; KEGG: dfe:Dfer_4027 hypothetical protein; SPTR: uncharacterized protein; transposase IS204/IS1001/IS1096/IS1165 family protein complement(4601233..4602216) Runella slithyformis DSM 19594 10872527 YP_004657471.1 CDS Runsl_3986 NC_015703.1 4602197 4602559 R hypothetical protein complement(4602197..4602559) Runella slithyformis DSM 19594 10872528 YP_004657472.1 CDS Runsl_3987 NC_015703.1 4603142 4603894 R PFAM: short chain dehydrogenase; serine 3-dehydrogenase complement(4603142..4603894) Runella slithyformis DSM 19594 10872531 YP_004657473.1 CDS Runsl_3988 NC_015703.1 4603964 4604326 R COGs: COG0450 Peroxiredoxin; InterPro IPR000866:IPR019479; KEGG: dfe:Dfer_5194 peroxidase; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin, C-terminal; PRIAM: Peroxidase; SPTR: Peroxidase; hypothetical protein complement(4603964..4604326) Runella slithyformis DSM 19594 10872532 YP_004657474.1 CDS Runsl_3989 NC_015703.1 4604548 4605183 R PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family; KEGG: sli:Slin_1291 hypothetical protein; SPTR: uncharacterized protein; peroxidase complement(4604548..4605183) Runella slithyformis DSM 19594 10872533 YP_004657475.1 CDS Runsl_3990 NC_015703.1 4605405 4606196 D COGs: COG0524 Sugar kinase ribokinase; InterPro IPR011611; KEGG: sli:Slin_1057 PfkB domain protein; PFAM: Carbohydrate/purine kinase; SPTR: PfkB domain protein; hypothetical protein 4605405..4606196 Runella slithyformis DSM 19594 10872534 YP_004657476.1 CDS Runsl_3991 NC_015703.1 4606203 4607216 D PFAM: pfkB family carbohydrate kinase; COGs: COG4886 Leucine-rich repeat (LRR) protein; InterPro IPR001611:IPR003591; KEGG: sli:Slin_1833 leucine-rich repeat-containing protein typical subtype; SPTR: Leucine-rich repeat-containing protein typical subtype; PfkB domain-containing protein 4606203..4607216 Runella slithyformis DSM 19594 10872535 YP_004657477.1 CDS Runsl_3992 NC_015703.1 4607322 4608710 D PFAM: Leucine Rich Repeat; hypothetical protein 4607322..4608710 Runella slithyformis DSM 19594 10872536 YP_004657478.1 CDS Runsl_3993 NC_015703.1 4609100 4609462 D COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: cao:Celal_2798 transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase; hypothetical protein 4609100..4609462 Runella slithyformis DSM 19594 10872538 YP_004657479.1 CDS Runsl_3994 NC_015703.1 4609443 4610426 D PFAM: Transposase; InterPro IPR001107; KEGG: cpi:Cpin_5610 hypothetical protein; PFAM: Band 7 protein; SPTR: Band 7 protein; transposase IS204/IS1001/IS1096/IS1165 family protein 4609443..4610426 Runella slithyformis DSM 19594 10872539 YP_004657480.1 CDS Runsl_3995 NC_015703.1 4611244 4612032 R PFAM: SPFH domain / Band 7 family; COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR003392; KEGG: dfe:Dfer_0413 conserved hypothetical protein, membrane; PFAM: Patched; SPTR: uncharacterized protein; hypothetical protein complement(4611244..4612032) Runella slithyformis DSM 19594 10872540 YP_004657481.1 CDS Runsl_3996 NC_015703.1 4612532 4614847 D PFAM: MMPL family; KEGG: sli:Slin_0262 Xaa-Pro aminopeptidase; SPTR: Xaa-Pro aminopeptidase enzyme; hypothetical protein 4612532..4614847 Runella slithyformis DSM 19594 10872541 YP_004657482.1 CDS Runsl_3997 NC_015703.1 4615042 4616433 R PFAM: Metallopeptidase M24; InterPro IPR000182; KEGG: mxa:MXAN_2839 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase, GNAT family; Xaa-Pro aminopeptidase complement(4615042..4616433) Runella slithyformis DSM 19594 10872542 YP_004657483.1 CDS Runsl_3998 NC_015703.1 4616555 4617109 D PFAM: Acetyltransferase (GNAT) family; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: shg:Sph21_2951 xylose isomerase domain-containing protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; N-acetyltransferase GCN5 4616555..4617109 Runella slithyformis DSM 19594 10872543 YP_004657484.1 CDS Runsl_3999 NC_015703.1 4617106 4618029 R PFAM: Xylose isomerase-like TIM barrel; KEGG: dfe:Dfer_5762 hypothetical protein; SPTR: uncharacterized protein; xylose isomerase domain-containing protein complement(4617106..4618029) Runella slithyformis DSM 19594 10872544 YP_004657485.1 CDS Runsl_4000 NC_015703.1 4618233 4621064 D COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR005913; KEGG: sli:Slin_4815 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; SPTR: dTDP-4-dehydrorhamnose reductase; hypothetical protein 4618233..4621064 Runella slithyformis DSM 19594 10872545 YP_004657486.1 CDS Runsl_4001 NC_015703.1 4621158 4622054 D PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase; COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: dfe:Dfer_4684 membrane bound O-acyl transferase MBOAT family protein; PFAM: Membrane bound O-acyl transferase, MBOAT; SPTR: Membrane bound O-acyl transferase MBOAT family protein; dTDP-4-dehydrorhamnose reductase 4621158..4622054 Runella slithyformis DSM 19594 10872546 YP_004657487.1 CDS Runsl_4002 NC_015703.1 4622147 4623598 R PFAM: MBOAT family; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_4683 ribonuclease III; PFAM: Glycosyl transferase, family 2; SPTR: Ribonuclease III; membrane bound O-acyl transferase MBOAT family protein complement(4622147..4623598) Runella slithyformis DSM 19594 10872547 YP_004657488.1 CDS Runsl_4003 NC_015703.1 4623700 4624680 R PFAM: Glycosyl transferase 2; KEGG: dfe:Dfer_4682 hypothetical protein; SPTR: uncharacterized protein; family 2 glycosyl transferase complement(4623700..4624680) Runella slithyformis DSM 19594 10872548 YP_004657489.1 CDS Runsl_4004 NC_015703.1 4624730 4626358 R KEGG: dfe:Dfer_4681 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4624730..4626358) Runella slithyformis DSM 19594 10872549 YP_004657490.1 CDS Runsl_4005 NC_015703.1 4626358 4627776 R COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_4680 ribonuclease III; PFAM: Glycosyl transferase, family 2; SPTR: Ribonuclease III; hypothetical protein complement(4626358..4627776) Runella slithyformis DSM 19594 10872550 YP_004657491.1 CDS Runsl_4006 NC_015703.1 4627904 4628860 R PFAM: Glycosyl transferase 2; COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR013747; KEGG: dfe:Dfer_3948 beta-ketoacyl-acyl-carrier-protein synthase I; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase III; SPTR: Beta-ketoacyl-acyl-carrier-protein synthase I; family 2 glycosyl transferase complement(4627904..4628860) Runella slithyformis DSM 19594 10872551 YP_004657492.1 CDS Runsl_4007 NC_015703.1 4629093 4630037 D PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; KEGG: sli:Slin_0045 hypothetical protein; SPTR: uncharacterized protein; manually curated; 3-ketoacyl-ACP synthase III 4629093..4630037 Runella slithyformis DSM 19594 10872552 YP_004657493.1 CDS Runsl_4008 NC_015703.1 4630128 4631029 R PFAM: transposase, YhgA-like; TIGRFAM: conserved hypothetical protein ( transposase or invertase); COGs: COG4341 HD phosphohydrolase; InterPro IPR006675; KEGG: sli:Slin_3397 metal dependent phosphohydrolase; SPTR: Metal dependent phosphohydrolase; TIGRFAM: HDIG; transposase complement(join(4630128..4630703,4630706..4631029)) Runella slithyformis DSM 19594 10872553 YP_004657494.1 CDS Runsl_4009 NC_015703.1 4631081 4631632 R PFAM: HD domain; TIGRFAM: phosphonate degradation operons associated HDIG domain protein; uncharacterized domain HDIG; COGs: COG3391 conserved hypothetical protein; KEGG: sli:Slin_3396 phosphoesterase; SPTR: Phosphoesterase; metal dependent phosphohydrolase complement(4631081..4631632) Runella slithyformis DSM 19594 10872554 YP_004657495.1 CDS Runsl_4010 NC_015703.1 4631744 4634464 R KEGG: sli:Slin_3399 hypothetical protein; SPTR: uncharacterized protein; phosphoesterase complement(4631744..4634464) Runella slithyformis DSM 19594 10872555 YP_004657496.1 CDS Runsl_4011 NC_015703.1 4634555 4636054 R hypothetical protein complement(4634555..4636054) Runella slithyformis DSM 19594 10872556 YP_004657497.1 CDS Runsl_4012 NC_015703.1 4636068 4636544 R InterPro IPR000200; KEGG: sli:Slin_2129 peptidase C10 streptopain; PFAM: Peptidase C10, streptopain; SPTR: Peptidase C10 streptopain; hypothetical protein complement(4636068..4636544) Runella slithyformis DSM 19594 10872557 YP_004657498.1 CDS Runsl_4013 NC_015703.1 4636556 4637878 R PFAM: Peptidase C10 family; InterPro IPR012910; KEGG: sli:Slin_3400 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; peptidase C10 streptopain complement(4636556..4637878) Runella slithyformis DSM 19594 10872558 YP_004657499.1 CDS Runsl_4014 NC_015703.1 4637959 4641177 R PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR005834; KEGG: sli:Slin_3402 haloacid dehalogenase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Haloacid dehalogenase domain protein hydrolase; TonB-dependent receptor plug complement(4637959..4641177) Runella slithyformis DSM 19594 10872559 YP_004657500.1 CDS Runsl_4015 NC_015703.1 4641446 4642195 D PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: phosphonatase-like hydrolase; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR017741:IPR006076; KEGG: sli:Slin_3401 FAD dependent oxidoreductase TIGR03364; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase TIGR03364; TIGRFAM: FAD-dependent oxidoreductase, HpnW; haloacid dehalogenase 4641446..4642195 Runella slithyformis DSM 19594 10872560 YP_004657501.1 CDS Runsl_4016 NC_015703.1 4642195 4643343 D PFAM: FAD dependent oxidoreductase; TIGRFAM: FAD dependent oxidoreductase TIGR03364; InterPro IPR003140; KEGG: sli:Slin_0089 hypothetical protein; PFAM: Phospholipase/carboxylesterase; SPTR: uncharacterized protein; FAD dependent oxidoreductase 4642195..4643343 Runella slithyformis DSM 19594 10872561 YP_004657502.1 CDS Runsl_4017 NC_015703.1 4643405 4644049 R PFAM: Phospholipase/Carboxylesterase; KEGG: sli:Slin_5039 hypothetical protein; SPTR: uncharacterized protein; phospholipase/carboxylesterase complement(4643405..4644049) Runella slithyformis DSM 19594 10872562 YP_004657503.1 CDS Runsl_4018 NC_015703.1 4644124 4644531 D hypothetical protein 4644124..4644531 Runella slithyformis DSM 19594 10872563 YP_004657504.1 CDS Runsl_4019 NC_015703.1 4644745 4644879 D COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: caa:Caka_1487 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: Probable TonB-dependent receptor yncD; hypothetical protein 4644745..4644879 Runella slithyformis DSM 19594 10872564 YP_004657505.1 CDS Runsl_4020 NC_015703.1 4645442 4647598 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase; InterPro IPR003265; KEGG: sli:Slin_2269 HhH-GPD family protein; PFAM: HhH-GPD domain; SMART: HhH-GPD domain; SPTR: HhH-GPD family protein; TonB-dependent receptor complement(4645442..4647598) Runella slithyformis DSM 19594 10872565 YP_004657506.1 CDS Runsl_4021 NC_015703.1 4648032 4648634 D PFAM: HhH-GPD superfamily base excision DNA repair protein; KEGG: cly:Celly_2677 hypothetical protein; SPTR: uncharacterized protein; HhH-GPD family protein 4648032..4648634 Runella slithyformis DSM 19594 10872566 YP_004657507.1 CDS Runsl_4022 NC_015703.1 4648704 4649222 D COGs: COG3757 Lyzozyme M1 (1 4-beta-N-acetylmuramidase); InterPro IPR018077:IPR002053; KEGG: dfe:Dfer_2632 glycoside hydrolase 25; PFAM: Glycoside hydrolase, family 25; SMART: Glycoside hydrolase, family 25 subgroup; SPTR: Glycoside hydrolase 25; hypothetical protein 4648704..4649222 Runella slithyformis DSM 19594 10872567 YP_004657508.1 CDS Runsl_4023 NC_015703.1 4649249 4650049 D PFAM: Glycosyl hydrolases family 25; COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: rbi:RB2501_07005 WD40-like beta propeller protein; PFAM: WD40-like Beta Propeller; SPTR: WD40-like Beta Propeller; glycoside hydrolase 4649249..4650049 Runella slithyformis DSM 19594 10872568 YP_004657509.1 CDS Runsl_4024 NC_015703.1 4650168 4651220 R PFAM: WD40-like Beta Propeller Repeat; COGs: COG3361 conserved hypothetical protein; InterPro IPR018644; KEGG: tsa:AciPR4_3498 hypothetical protein; PFAM: Protein of unknown function DUF2071; SPTR: uncharacterized protein; hypothetical protein complement(4650168..4651220) Runella slithyformis DSM 19594 10872569 YP_004657510.1 CDS Runsl_4025 NC_015703.1 4651630 4652343 R PFAM: Uncharacterized conserved protein (COG2071); COGs: COG3655 transcriptional regulator protein; InterPro IPR001387; KEGG: ckr:CKR_3004 hypothetical protein; SMART: Helix-turn-helix type 3; SPTR: uncharacterized protein; hypothetical protein complement(4651630..4652343) Runella slithyformis DSM 19594 10872570 YP_004657511.1 CDS Runsl_4026 NC_015703.1 4652618 4652842 R XRE family transcriptional regulator complement(4652618..4652842) Runella slithyformis DSM 19594 10872571 YP_004657512.1 CDS Runsl_4027 NC_015703.1 4652846 4653340 R COGs: COG0166 Glucose-6-phosphate isomerase; HAMAP: Phosphoglucose isomerase (PGI); InterPro IPR001672; KEGG: dfe:Dfer_1231 glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase (PGI); PRIAM: Glucose-6-phosphate isomerase; SPTR: Glucose-6-phosphate isomerase; hypothetical protein complement(4652846..4653340) Runella slithyformis DSM 19594 10872572 YP_004657513.1 CDS Runsl_4028 NC_015703.1 4653661 4655310 D PFAM: Phosphoglucose isomerase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: sli:Slin_2407 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; glucose-6-phosphate isomerase 4653661..4655310 Runella slithyformis DSM 19594 10872573 YP_004657514.1 CDS Runsl_4029 NC_015703.1 4655488 4656648 D PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR000182; KEGG: dfe:Dfer_1254 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; AraC family transcriptional regulator 4655488..4656648 Runella slithyformis DSM 19594 10872574 YP_004657515.1 CDS Runsl_4030 NC_015703.1 4656645 4657439 R KEGG: sli:Slin_2406 acyltransferase 3; SPTR: Acyltransferase 3; N-acetyltransferase GCN5 complement(4656645..4657439) Runella slithyformis DSM 19594 10872575 YP_004657516.1 CDS Runsl_4031 NC_015703.1 4657597 4658772 D PFAM: Acyltransferase; KEGG: mtt:Ftrac_0427 hypothetical protein; SPTR: uncharacterized protein; acyltransferase 4657597..4658772 Runella slithyformis DSM 19594 10872576 YP_004657517.1 CDS Runsl_4032 NC_015703.1 4658784 4659509 D COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; InterPro IPR006148; KEGG: dfe:Dfer_2815 glucosamine-6-phosphate deaminase; PFAM: Glucosamine/galactosamine-6-phosphate isomerase; PRIAM: Glucosamine-6-phosphate deaminase; SPTR: Glucosamine-6-phosphate deaminase; hypothetical protein 4658784..4659509 Runella slithyformis DSM 19594 10872577 YP_004657518.1 CDS Runsl_4033 NC_015703.1 4659589 4660302 D PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; TIGRFAM: glucosamine-6-phosphate isomerase; InterPro IPR008671; KEGG: sli:Slin_0447 lycopene beta and epsilon cyclase; PFAM: Lycopene beta/epsilon cyclase; SPTR: Lycopene beta and epsilon cyclase; glucosamine-6-phosphate deaminase 4659589..4660302 Runella slithyformis DSM 19594 10872578 YP_004657519.1 CDS Runsl_4034 NC_015703.1 4660299 4661456 R PFAM: Lycopene cyclase; Prodigal; manually curated; Lycopene beta and epsilon cyclase complement(4660299..4661456) Runella slithyformis DSM 19594 10872579 YP_004657520.1 CDS Runsl_4036 NC_015703.1 4662319 4662522 D hypothetical protein 4662319..4662522 Runella slithyformis DSM 19594 10872581 YP_004657521.1 CDS Runsl_4037 NC_015703.1 4662519 4662683 D hypothetical protein 4662519..4662683 Runella slithyformis DSM 19594 10872582 YP_004657522.1 CDS Runsl_4038 NC_015703.1 4662714 4662911 D Prodigal; manually curated; hypothetical protein 4662714..4662911 Runella slithyformis DSM 19594 10872583 YP_004657523.1 CDS Runsl_4040 NC_015703.1 4664299 4665414 D hypothetical protein 4664299..4665414 Runella slithyformis DSM 19594 10872585 YP_004657524.1 CDS Runsl_4041 NC_015703.1 4665627 4665986 R hypothetical protein complement(4665627..4665986) Runella slithyformis DSM 19594 10872586 YP_004657525.1 CDS Runsl_4042 NC_015703.1 4666252 4666494 D hypothetical protein 4666252..4666494 Runella slithyformis DSM 19594 10872587 YP_004657526.1 CDS Runsl_4043 NC_015703.1 4666510 4666737 D hypothetical protein 4666510..4666737 Runella slithyformis DSM 19594 10872588 YP_004657527.1 CDS Runsl_4044 NC_015703.1 4666835 4667422 D KEGG: shg:Sph21_4440 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4666835..4667422 Runella slithyformis DSM 19594 10872589 YP_004657528.1 CDS Runsl_4045 NC_015703.1 4667491 4667973 D PFAM: CAAX amino terminal protease; Prodigal; manually curated; hypothetical protein 4667491..4667973 Runella slithyformis DSM 19594 10872590 YP_004657529.1 CDS Runsl_4047 NC_015703.1 4669175 4669432 R PFAM: Plasmid encoded toxin Txe; TIGRFAM: toxin-antitoxin system, toxin component, Txe/YoeB family; KEGG: cyh:Cyan8802_3568 hypothetical protein; SPTR: uncharacterized protein; Txe/YoeB family addiction module toxin complement(4669175..4669432) Runella slithyformis DSM 19594 10872592 YP_004657530.1 CDS Runsl_4048 NC_015703.1 4669425 4669679 R Prodigal; manually curated; hypothetical protein complement(4669425..4669679) Runella slithyformis DSM 19594 10872593 YP_004657531.1 CDS Runsl_4050 NC_015703.1 4671493 4672371 R PFAM: Radical SAM superfamily; TIGRFAM: lipoate synthase; KEGG: dfe:Dfer_3201 hypothetical protein; SPTR: uncharacterized protein; lipoyl synthase complement(4671493..4672371) Runella slithyformis DSM 19594 10872595 YP_004657532.1 CDS Runsl_4051 NC_015703.1 4672445 4673203 R COGs: COG1765 redox protein regulator of disulfide bond formation; InterPro IPR003718; KEGG: sli:Slin_0444 OsmC family protein; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: OsmC family protein; hypothetical protein complement(4672445..4673203) Runella slithyformis DSM 19594 10872596 YP_004657533.1 CDS Runsl_4052 NC_015703.1 4673424 4673852 D PFAM: OsmC-like protein; InterPro IPR010846; KEGG: lby:Lbys_1701 hypothetical protein; PFAM: Protein of unknown function DUF1460; SPTR: uncharacterized protein; OsmC family protein 4673424..4673852 Runella slithyformis DSM 19594 10872597 YP_004657534.1 CDS Runsl_4053 NC_015703.1 4673913 4674728 D PFAM: Protein of unknown function (DUF1460); COGs: COG1864 DNA/RNA endonuclease G NUC1; InterPro IPR020821:IPR001604; KEGG: sli:Slin_0792 DNA/RNA non-specific endonuclease; PFAM: DNA/RNA non-specific endonuclease; SMART: Extracellular Endonuclease, subunit A; SPTR: DNA/RNA non-specific endonuclease; hypothetical protein 4673913..4674728 Runella slithyformis DSM 19594 10872598 YP_004657535.1 CDS Runsl_4054 NC_015703.1 4674730 4675773 R PFAM: DNA/RNA non-specific endonuclease; COGs: COG2081 flavoprotein; InterPro IPR004792; KEGG: sli:Slin_0791 HI0933 family protein; PFAM: HI0933-like protein; SPTR: HI0933 family protein; TIGRFAM: HI0933-like protein; DNA/RNA non-specific endonuclease complement(4674730..4675773) Runella slithyformis DSM 19594 10872599 YP_004657536.1 CDS Runsl_4055 NC_015703.1 4675888 4677138 D PFAM: HI0933-like protein; TIGRFAM: flavoprotein, HI0933 family; COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: dfe:Dfer_2940 NLP/P60 protein; PFAM: NLP/P60; SPTR: NLP/P60 protein; hypothetical protein 4675888..4677138 Runella slithyformis DSM 19594 10872600 YP_004657537.1 CDS Runsl_4056 NC_015703.1 4677231 4677746 R PFAM: NlpC/P60 family; InterPro IPR000182; KEGG: sli:Slin_1326 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; NLP/P60 protein complement(4677231..4677746) Runella slithyformis DSM 19594 10872601 YP_004657538.1 CDS Runsl_4057 NC_015703.1 4677994 4678491 D PFAM: Acetyltransferase (GNAT) family; N-acetyltransferase GCN5 4677994..4678491 Runella slithyformis DSM 19594 10872602 YP_004657539.1 CDS Runsl_4058 NC_015703.1 4678560 4678781 D KEGG: sli:Slin_5131 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4678560..4678781 Runella slithyformis DSM 19594 10872603 YP_004657540.1 CDS Runsl_4059 NC_015703.1 4678771 4679094 D COGs: COG1331 Highly conserved protein containing a thioredoxin domain; InterPro IPR004879; KEGG: dfe:Dfer_0027 protein of unknown function DUF255; SPTR: uncharacterized protein; hypothetical protein 4678771..4679094 Runella slithyformis DSM 19594 10872604 YP_004657541.1 CDS Runsl_4060 NC_015703.1 4679212 4681314 D PFAM: Protein of unknown function, DUF255; COGs: COG1738 conserved hypothetical protein; InterPro IPR003744; KEGG: dfe:Dfer_2724 hypothetical protein; PFAM: Protein of unknown function DUF165; SPTR: uncharacterized protein; TIGRFAM: Protein of unknown function DUF165; hypothetical protein 4679212..4681314 Runella slithyformis DSM 19594 10872605 YP_004657542.1 CDS Runsl_4061 NC_015703.1 4681339 4682136 D PFAM: Uncharacterized ACR, YhhQ family COG1738; TIGRFAM: conserved hypothetical integral membrane protein; COGs: COG3129 SAM-dependent methyltransferase; HAMAP: Ribosomal RNA large subunit methyltransferase F; InterPro IPR010286:IPR016909; KEGG: ppr:PBPRB0892 SAM-dependent methyltransferase; PFAM: S-adenosyl-L-methionine dependent methyltransferase, predicted; PRIAM: rRNA (adenine-N(6)-)-methyltransferase; SPTR: Ribosomal RNA large subunit methyltransferase F; hypothetical protein 4681339..4682136 Runella slithyformis DSM 19594 10872606 YP_004657543.1 CDS Runsl_4062 NC_015703.1 4682169 4683137 R PFAM: Protein of unknown function (DUF890); ribosomal RNA large subunit methyltransferase F complement(4682169..4683137) Runella slithyformis DSM 19594 10872607 YP_004657544.1 CDS Runsl_4063 NC_015703.1 4683154 4683321 R InterPro IPR006626:IPR011459; KEGG: sli:Slin_1130 PDZ/DHR/GLGF domain protein; PFAM: Protein of unknown function DUF1565; SPTR: PDZ/DHR/GLGF domain protein; hypothetical protein complement(4683154..4683321) Runella slithyformis DSM 19594 10872608 YP_004657545.1 CDS Runsl_4064 NC_015703.1 4683704 4686061 R COGs: COG1115 Na+/alanine symporter; InterPro IPR001463; KEGG: shg:Sph21_0204 amino acid carrier protein; PFAM: Sodium:alanine symporter; SPTR: Amino acid carrier protein; TIGRFAM: Sodium:alanine symporter; hypothetical protein complement(4683704..4686061) Runella slithyformis DSM 19594 10872609 YP_004657546.1 CDS Runsl_4065 NC_015703.1 4686259 4687686 D PFAM: Sodium:alanine symporter family; TIGRFAM: amino acid carrier protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: dfe:Dfer_2873 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; amino acid carrier protein 4686259..4687686 Runella slithyformis DSM 19594 10872610 YP_004657547.1 CDS Runsl_4066 NC_015703.1 4687947 4689230 D PFAM: Oxidoreductase, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR006311:IPR012307; KEGG: dfe:Dfer_2872 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; oxidoreductase domain-containing protein 4687947..4689230 Runella slithyformis DSM 19594 10872611 YP_004657548.1 CDS Runsl_4067 NC_015703.1 4689345 4690244 D PFAM: Xylose isomerase-like TIM barrel; COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001:IPR001650:IPR011545:IPR005580; KEGG: sli:Slin_3331 DEAD/DEAH box helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein; xylose isomerase domain-containing protein 4689345..4690244 Runella slithyformis DSM 19594 10872612 YP_004657549.1 CDS Runsl_4068 NC_015703.1 4690399 4691721 D PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase; COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: dfe:Dfer_3737 AAA ATPase; SMART: ATPase, AAA+ type, core; SPTR: AAA ATPase; DEAD/DEAH box helicase 4690399..4691721 Runella slithyformis DSM 19594 10872613 YP_004657550.1 CDS Runsl_4069 NC_015703.1 4691899 4693083 D PFAM: ATPase associated with various cellular activities (AAA); KEGG: sli:Slin_3516 hypothetical protein; SPTR: uncharacterized protein; ATPase AAA 4691899..4693083 Runella slithyformis DSM 19594 10872614 YP_004657551.1 CDS Runsl_4070 NC_015703.1 4693092 4694384 D COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_1279 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; hypothetical protein 4693092..4694384 Runella slithyformis DSM 19594 10872615 YP_004657552.1 CDS Runsl_4071 NC_015703.1 4694391 4695131 R PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: dfe:Dfer_1280 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; LytTR family two component transcriptional regulator complement(4694391..4695131) Runella slithyformis DSM 19594 10872616 YP_004657553.1 CDS Runsl_4072 NC_015703.1 4695141 4697213 R PFAM: Histidine kinase; 7TM diverse intracellular signalling; InterPro IPR006311:IPR013096; KEGG: sli:Slin_3501 cupin; PFAM: Cupin 2, conserved barrel; SPTR: Cupin 2 conserved barrel domain protein; signal transduction histidine kinase complement(4695141..4697213) Runella slithyformis DSM 19594 10872617 YP_004657554.1 CDS Runsl_4073 NC_015703.1 4697487 4698098 D PFAM: Cupin domain; Prodigal; manually curated; cupin 4697487..4698098 Runella slithyformis DSM 19594 10872618 YP_004657555.1 CDS Runsl_4075 NC_015703.1 4699161 4699739 D Prodigal; manually curated; hypothetical protein 4699161..4699739 Runella slithyformis DSM 19594 10872620 YP_004657556.1 CDS Runsl_4077 NC_015703.1 4701081 4704254 D PFAM: TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-linked outer membrane protein, SusC/RagA family; KEGG: sli:Slin_4223 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 4701081..4704254 Runella slithyformis DSM 19594 10872622 YP_004657557.1 CDS Runsl_4078 NC_015703.1 4704275 4705900 D PFAM: SusD family; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: dfe:Dfer_4164 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; hypothetical protein 4704275..4705900 Runella slithyformis DSM 19594 10872623 YP_004657558.1 CDS Runsl_4079 NC_015703.1 4706079 4709198 R PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_4163 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; acriflavin resistance protein complement(4706079..4709198) Runella slithyformis DSM 19594 10872624 YP_004657559.1 CDS Runsl_4080 NC_015703.1 4709211 4710269 R PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_4162 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; RND family efflux transporter MFP subunit complement(4709211..4710269) Runella slithyformis DSM 19594 10872625 YP_004657560.1 CDS Runsl_4081 NC_015703.1 4710285 4711616 R PFAM: Outer membrane efflux protein; InterPro IPR000835; KEGG: dfe:Dfer_4161 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; outer membrane efflux protein complement(4710285..4711616) Runella slithyformis DSM 19594 10872626 YP_004657561.1 CDS Runsl_4082 NC_015703.1 4711694 4712170 R PFAM: MarR family; InterPro IPR008538; KEGG: dfe:Dfer_4621 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; regulatory protein MarR complement(4711694..4712170) Runella slithyformis DSM 19594 10872627 YP_004657562.1 CDS Runsl_4083 NC_015703.1 4712334 4712897 R PFAM: Protein of unknown function (DUF820); COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: sli:Slin_0993 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: tRNA/rRNA methyltransferase (SpoU); hypothetical protein complement(4712334..4712897) Runella slithyformis DSM 19594 10872628 YP_004657563.1 CDS Runsl_4084 NC_015703.1 4712944 4713729 R PFAM: SpoU rRNA Methylase; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: sli:Slin_0992 surface antigen (D15); PFAM: Bacterial surface antigen (D15); SPTR: Surface antigen (D15); tRNA/rRNA methyltransferase SpoU complement(4712944..4713729) Runella slithyformis DSM 19594 10872629 YP_004657564.1 CDS Runsl_4085 NC_015703.1 4713765 4716506 D PFAM: Surface antigen; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: cpi:Cpin_2831 outer membrane protein; PFAM: Outer membrane efflux protein; SPTR: outer membrane protein; surface antigen (D15) 4713765..4716506 Runella slithyformis DSM 19594 10872630 YP_004657565.1 CDS Runsl_4086 NC_015703.1 4716579 4717985 R PFAM: Outer membrane efflux protein; COGs: COG1566 Multidrug resistance efflux pump; KEGG: sli:Slin_3996 secretion protein HlyD; SPTR: Secretion protein HlyD; outer membrane efflux protein complement(4716579..4717985) Runella slithyformis DSM 19594 10872631 YP_004657566.1 CDS Runsl_4087 NC_015703.1 4718039 4719406 R COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR003439; KEGG: rbi:RB2501_08265 HlyB/MsbA family ABC transporter; PFAM: ABC transporter-like; PRIAM: Xenobiotic-transporting ATPase; SPTR: HlyB/MsbA family ABC transporter; secretion protein HlyD complement(4718039..4719406) Runella slithyformis DSM 19594 10872632 YP_004657567.1 CDS Runsl_4088 NC_015703.1 4719433 4721619 R PFAM: ABC transporter; KEGG: sli:Slin_1651 hypothetical protein; SPTR: uncharacterized protein; xenobiotic-transporting ATPase complement(4719433..4721619) Runella slithyformis DSM 19594 10872633 YP_004657568.1 CDS Runsl_4089 NC_015703.1 4721797 4722537 D InterPro IPR000209; KEGG: sli:Slin_1650 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Peptidase S8 and S53 subtilisin kexin sedolisin; hypothetical protein 4721797..4722537 Runella slithyformis DSM 19594 10872634 YP_004657569.1 CDS Runsl_4090 NC_015703.1 4722578 4724281 D PFAM: Subtilase; COGs: COG2761 dithiol-disulfide isomerase involved in polyketide biosynthesis; InterPro IPR001853; KEGG: rpd:RPD_1717 DsbA oxidoreductase; PFAM: DSBA oxidoreductase; SPTR: DSBA oxidoreductase; peptidase S8 and S53 subtilisin kexin sedolisin 4722578..4724281 Runella slithyformis DSM 19594 10872635 YP_004657570.1 CDS Runsl_4091 NC_015703.1 4724295 4724996 D PFAM: DSBA-like thioredoxin domain; COGs: COG0228 Ribosomal protein S16; HAMAP: Ribosomal protein S16; InterPro IPR000307; KEGG: dfe:Dfer_2582 30S ribosomal protein S16; PFAM: Ribosomal protein S16; SPTR: 30S ribosomal protein S16; TIGRFAM: Ribosomal protein S16; DSBA oxidoreductase 4724295..4724996 Runella slithyformis DSM 19594 10872636 YP_004657571.1 CDS Runsl_4092 NC_015703.1 4725111 4725635 D PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; COGs: COG0806 RimM protein required for 16S rRNA processing; HAMAP: 16S rRNA processing protein RimM; InterPro IPR011961:IPR002676:IPR007903; KEGG: sli:Slin_1385 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel; SPTR: Ribosome maturation factor rimM; TIGRFAM: 16S rRNA processing protein RimM; 30S ribosomal protein S16 4725111..4725635 Runella slithyformis DSM 19594 10872637 YP_004657572.1 CDS Runsl_4093 NC_015703.1 4725705 4726274 D PFAM: PRC-barrel domain; RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM; COGs: COG0336 tRNA-(guanine-N1)-methyltransferase; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; InterPro IPR002649:IPR016009; KEGG: sli:Slin_1386 tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; PRIAM: tRNA (guanine-N(1)-)-methyltransferase; SPTR: tRNA (guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; ribosome maturation factor rimM 4725705..4726274 Runella slithyformis DSM 19594 10872638 YP_004657573.1 CDS Runsl_4094 NC_015703.1 4726277 4726951 D PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; COGs: COG0063 sugar kinase; InterPro IPR004443:IPR000631; KEGG: sli:Slin_1453 carbohydrate kinase, YjeF related protein; PFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; SPTR: Carbohydrate kinase, YjeF related protein; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; tRNA (guanine-N(1)-)-methyltransferase 4726277..4726951 Runella slithyformis DSM 19594 10872639 YP_004657574.1 CDS Runsl_4095 NC_015703.1 4727323 4728846 R PFAM: YjeF-related protein N-terminus; Carbohydrate kinase; TIGRFAM: yjeF C-terminal region, hydroxyethylthiazole kinase-related; yjeF N-terminal region; COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869; KEGG: rbi:RB2501_13474 capsular polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein CapD-like; SPTR: Polysaccharide biosynthesis protein; hypothetical protein complement(4727323..4728846) Runella slithyformis DSM 19594 10872640 YP_004657575.1 CDS Runsl_4096 NC_015703.1 4728899 4730836 R PFAM: Polysaccharide biosynthesis protein; COGs: COG1090 nucleoside-diphosphate sugar epimerase; InterPro IPR010099:IPR001509:IPR013549; KEGG: dfe:Dfer_4158 domain of unknown function DUF1731; PFAM: Domain of unknown function DUF1731, C-terminal; NAD-dependent epimerase/dehydratase; SPTR: uncharacterized protein; polysaccharide biosynthesis protein CapD complement(4728899..4730836) Runella slithyformis DSM 19594 10872641 YP_004657576.1 CDS Runsl_4097 NC_015703.1 4730937 4731845 R PFAM: NAD dependent epimerase/dehydratase; Domain of unknown function (DUF1731); TIGRFAM: TIGR01777 family protein; hypothetical protein complement(4730937..4731845) Runella slithyformis DSM 19594 10872642 YP_004657577.1 CDS Runsl_4098 NC_015703.1 4732160 4732270 R COGs: COG0556 Helicase subunit of the DNA excision repair complex; HAMAP: Excinuclease ABC, B subunit; InterProIPR004807:IPR014001:IPR001650:IPR006935:IPR 001943; KEGG: sli:Slin_3612 excinuclease ABC subunit B; PFAM: DNA/RNA helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: UvrABC system protein B; TIGRFAM: Excinuclease ABC, B subunit; hypothetical protein complement(4732160..4732270) Runella slithyformis DSM 19594 10872643 YP_004657578.1 CDS Runsl_4099 NC_015703.1 4732354 4734372 D PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit; COGs: COG0824 thioesterase; InterPro IPR006683; KEGG: cph:Cpha266_1929 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily; UvrABC system protein B 4732354..4734372 Runella slithyformis DSM 19594 10872644 YP_004657579.1 CDS Runsl_4100 NC_015703.1 4734394 4734804 D PFAM: Acyl-ACP thioesterase; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family; InterPro IPR007712; KEGG: pcu:pc0990 hypothetical protein; PFAM: Plasmid stabilisation system; SPTR: Addiction module toxin, RelE/StbE family; thioesterase 4734394..4734804 Runella slithyformis DSM 19594 10872645 YP_004657580.1 CDS Runsl_4101 NC_015703.1 4734869 4735126 D PFAM: Plasmid stabilisation system protein; plasmid stabilization system 4734869..4735126 Runella slithyformis DSM 19594 10872646 YP_004657581.1 CDS Runsl_4102 NC_015703.1 4735117 4735254 R COGs: COG1186 Protein chain release factor B; InterPro IPR000352; KEGG: dfe:Dfer_4614 class I peptide chain release factor; PFAM: Class I peptide chain release factor; SPTR: Class I peptide chain release factor; hypothetical protein complement(4735117..4735254) Runella slithyformis DSM 19594 10872647 YP_004657582.1 CDS Runsl_4103 NC_015703.1 4735363 4735767 D PFAM: RF-1 domain; InterPro IPR000182; KEGG: sli:Slin_1787 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; class I peptide chain release factor 4735363..4735767 Runella slithyformis DSM 19594 10872648 YP_004657583.1 CDS Runsl_4104 NC_015703.1 4735771 4736310 D PFAM: Acetyltransferase (GNAT) family; N-acetyltransferase GCN5 4735771..4736310 Runella slithyformis DSM 19594 10872649 YP_004657584.1 CDS Runsl_4105 NC_015703.1 4736315 4736494 R hypothetical protein complement(4736315..4736494) Runella slithyformis DSM 19594 10872650 YP_004657585.1 CDS Runsl_4106 NC_015703.1 4736579 4737517 R COGs: COG0157 Nicotinate-nucleotide pyrophosphorylase; InterPro IPR004393:IPR002638; KEGG: sli:Slin_5167 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; PRIAM: Nicotinate-nucleotide diphosphorylase (carboxylating); SPTR: Nicotinate-nucleotide pyrophosphorylase; TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; hypothetical protein complement(4736579..4737517) Runella slithyformis DSM 19594 10872651 YP_004657586.1 CDS Runsl_4107 NC_015703.1 4737852 4738685 D PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; KEGG: sli:Slin_0397 hypothetical protein; SPTR: uncharacterized protein; nicotinate-nucleotide pyrophosphorylase 4737852..4738685 Runella slithyformis DSM 19594 10872652 YP_004657587.1 CDS Runsl_4108 NC_015703.1 4738814 4739551 R hypothetical protein complement(4738814..4739551) Runella slithyformis DSM 19594 10872653 YP_004657588.1 CDS Runsl_4109 NC_015703.1 4739905 4740309 D KEGG: dfe:Dfer_2961 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4739905..4740309 Runella slithyformis DSM 19594 10872654 YP_004657589.1 CDS Runsl_4110 NC_015703.1 4740319 4740972 D hypothetical protein 4740319..4740972 Runella slithyformis DSM 19594 10872655 YP_004657590.1 CDS Runsl_4111 NC_015703.1 4741069 4741530 D COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594:IPR011712; KEGG: sli:Slin_5844 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; SMART: ATP-binding region, ATPase-like; SPTR: Histidine kinase; hypothetical protein 4741069..4741530 Runella slithyformis DSM 19594 10872656 YP_004657591.1 CDS Runsl_4112 NC_015703.1 4741695 4742525 D PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: sli:Slin_5845 LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SPTR: Two component transcriptional regulator, LuxR family; signal transduction histidine kinase 4741695..4742525 Runella slithyformis DSM 19594 10872657 YP_004657592.1 CDS Runsl_4113 NC_015703.1 4742648 4743298 D PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: dfe:Dfer_0898 linoleoyl-CoA desaturase; PFAM: Fatty acid desaturase, type 1; PRIAM: Linoleoyl-CoA desaturase; SPTR: Linoleoyl-CoA desaturase; LuxR family transcriptional regulator 4742648..4743298 Runella slithyformis DSM 19594 10872658 YP_004657593.1 CDS Runsl_4114 NC_015703.1 4743313 4744428 R PFAM: Fatty acid desaturase; KEGG: sli:Slin_2263 hypothetical protein; SPTR: uncharacterized protein; Linoleoyl-CoA desaturase complement(4743313..4744428) Runella slithyformis DSM 19594 10872659 YP_004657594.1 CDS Runsl_4115 NC_015703.1 4744626 4745267 D COGs: COG0787 Alanine racemase; HAMAP: Alanine racemase; InterPro IPR000821:IPR013221:IPR001608:IPR011079; KEGG: dfe:Dfer_4988 bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; PFAM: Alanine racemase, N-terminal; Mur ligase, central; Alanine racemase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase., Alanine racemase; SPTR: Alanine racemase; TIGRFAM: Alanine racemase; hypothetical protein 4744626..4745267 Runella slithyformis DSM 19594 10872660 YP_004657595.1 CDS Runsl_4116 NC_015703.1 4745274 4747772 R PFAM: Alanine racemase, C-terminal domain; Alanine racemase, N-terminal domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; alanine racemase; InterPro IPR004360; KEGG: cpi:Cpin_1769 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; alanine racemase complement(4745274..4747772) Runella slithyformis DSM 19594 10872661 YP_004657596.1 CDS Runsl_4117 NC_015703.1 4747866 4748252 R PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; KEGG: ppn:Palpr_0253 lipoprotein; SPTR: lipoprotein; Glyoxalase/bleomycin resistance protein/dioxygenase complement(4747866..4748252) Runella slithyformis DSM 19594 10872662 YP_004657597.1 CDS Runsl_4118 NC_015703.1 4748392 4749114 R Prodigal; manually curated; hypothetical protein complement(4748392..4749114) Runella slithyformis DSM 19594 10872663 YP_004657598.1 CDS Runsl_4120 NC_015703.1 4750203 4752968 D PFAM: TonB-dependent Receptor Plug Domain; TonB-dependent receptor 4750203..4752968 Runella slithyformis DSM 19594 10872665 YP_004657599.1 CDS Runsl_4121 NC_015703.1 4753214 4753405 D Prodigal; manually curated; hypothetical protein 4753214..4753405 Runella slithyformis DSM 19594 10872666 YP_004657600.1 CDS Runsl_4123 NC_015703.1 4754773 4755078 D COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance; InterPro IPR005496; KEGG: sli:Slin_6503 integral membrane protein TerC; PFAM: Integral membrane protein TerC; SPTR: Integral membrane protein TerC; hypothetical protein 4754773..4755078 Runella slithyformis DSM 19594 10872668 YP_004657601.1 CDS Runsl_4124 NC_015703.1 4755131 4755961 R PFAM: Integral membrane protein TerC family; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: cpi:Cpin_0778 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Kynurenine--oxoglutarate transaminase; SPTR: Aminotransferase class I and II; integral membrane protein TerC complement(4755131..4755961) Runella slithyformis DSM 19594 10872669 YP_004657602.1 CDS Runsl_4125 NC_015703.1 4756130 4757275 D PFAM: Aminotransferase class I and II; COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: dfe:Dfer_4179 NLP/P60 protein; PFAM: NLP/P60; SPTR: NLP/P60 protein; kynurenine--oxoglutarate transaminase 4756130..4757275 Runella slithyformis DSM 19594 10872670 YP_004657603.1 CDS Runsl_4126 NC_015703.1 4757342 4757899 R PFAM: NlpC/P60 family; InterPro IPR001845; KEGG: sli:Slin_3936 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family; NLP/P60 protein complement(4757342..4757899) Runella slithyformis DSM 19594 10872671 YP_004657604.1 CDS Runsl_4127 NC_015703.1 4758070 4758396 D PFAM: Bacterial regulatory protein, arsR family; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216:IPR000182; KEGG: sli:Slin_3937 methyltransferase type 11; PFAM: Methyltransferase type 11; GCN5-related N-acetyltransferase; SPTR: Methyltransferase type 11; regulatory protein ArsR 4758070..4758396 Runella slithyformis DSM 19594 10872672 YP_004657605.1 CDS Runsl_4128 NC_015703.1 4758447 4759808 D PFAM: Methyltransferase domain; Acetyltransferase (GNAT) family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: sli:Slin_4971 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; type 11 methyltransferase 4758447..4759808 Runella slithyformis DSM 19594 10872673 YP_004657606.1 CDS Runsl_4129 NC_015703.1 4759827 4760702 R PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR008775; KEGG: sli:Slin_4972 phytanoyl-CoA dioxygenase; PFAM: Phytanoyl-CoA dioxygenase; SPTR: Phytanoyl-CoA dioxygenase; AraC family transcriptional regulator complement(4759827..4760702) Runella slithyformis DSM 19594 10872674 YP_004657607.1 CDS Runsl_4130 NC_015703.1 4760875 4761702 D PFAM: Phytanoyl-CoA dioxygenase (PhyH); COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: sli:Slin_5516 phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; SPTR: Competence protein; phytanoyl-CoA dioxygenase 4760875..4761702 Runella slithyformis DSM 19594 10872675 YP_004657608.1 CDS Runsl_4131 NC_015703.1 4761763 4762470 D PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein; COGs: COG1262 conserved hypothetical protein; InterPro IPR019868:IPR005532; KEGG: sli:Slin_5515 gliding motility-associated lipoprotein GldJ; PFAM: Sulphatase-modifying factor; SPTR: Gliding motility-associated lipoprotein GldJ; TIGRFAM: Gliding motility-associated lipoprotein GldJ-short; phosphoribosyltransferase 4761763..4762470 Runella slithyformis DSM 19594 10872676 YP_004657609.1 CDS Runsl_4132 NC_015703.1 4762537 4763844 R PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: gliding motility-associated lipoprotein GldJ; COGs: COG0817 Holliday junction resolvasome endonuclease subunit; HAMAP: Crossover junction endodeoxyribonuclease RuvC; InterPro IPR002176; KEGG: dfe:Dfer_2024 crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; PRIAM: Crossover junction endodeoxyribonuclease; SPTR: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; gliding motility-associated lipoprotein GldJ complement(4762537..4763844) Runella slithyformis DSM 19594 10872677 YP_004657610.1 CDS Runsl_4133 NC_015703.1 4764254 4764844 R PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; KEGG: dfe:Dfer_2025 hypothetical protein; SPTR: uncharacterized protein; Crossover junction endodeoxyribonuclease ruvC complement(4764254..4764844) Runella slithyformis DSM 19594 10872678 YP_004657611.1 CDS Runsl_4134 NC_015703.1 4764846 4765844 D PFAM: Uncharacterised protein family (UPF0104); COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_2238 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; hypothetical protein 4764846..4765844 Runella slithyformis DSM 19594 10872679 YP_004657612.1 CDS Runsl_4135 NC_015703.1 4765890 4767017 D PFAM: Glycosyl transferase 2; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: sli:Slin_2237 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; family 2 glycosyl transferase 4765890..4767017 Runella slithyformis DSM 19594 10872680 YP_004657613.1 CDS Runsl_4136 NC_015703.1 4767057 4767731 D PFAM: Polysaccharide deacetylase; KEGG: acl:ACL_0165 integral membrane protein; SPTR: Integral membrane protein; polysaccharide deacetylase 4767057..4767731 Runella slithyformis DSM 19594 10872681 YP_004657614.1 CDS Runsl_4137 NC_015703.1 4767748 4768422 R PFAM: Protein of unknown function (DUF3267); COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076; KEGG: sli:Slin_4949 glucose-methanol-choline oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; hypothetical protein complement(4767748..4768422) Runella slithyformis DSM 19594 10872682 YP_004657615.1 CDS Runsl_4138 NC_015703.1 4768463 4770187 R PFAM: GMC oxidoreductase; COGs: COG0714 MoxR-like ATPase; InterPro IPR003593:IPR011704; KEGG: pfo:Pfl01_1409 ATPase; PFAM: ATPase associated with various cellular activities, AAA-5; SMART: ATPase, AAA+ type, core; SPTR: ATPase, AAA family; FAD dependent oxidoreductase complement(4768463..4770187) Runella slithyformis DSM 19594 10872683 YP_004657616.1 CDS Runsl_4139 NC_015703.1 4770387 4771235 D PFAM: ATPase associated with various cellular activities (AAA); COGs: COG3825 conserved hypothetical protein; KEGG: reh:H16_A1116 von Willebrand factor type A domain-containing protein; SPTR: uncharacterized protein; ATPase 4770387..4771235 Runella slithyformis DSM 19594 10872684 YP_004657617.1 CDS Runsl_4140 NC_015703.1 4771282 4772484 D PFAM: VWA domain containing CoxE-like protein; COGs: COG1385 conserved hypothetical protein; InterPro IPR006700; KEGG: sli:Slin_1352 hypothetical protein; PFAM: Ribosomal RNA small subunit methyltransferase E; SPTR: uncharacterized protein; TIGRFAM: Ribosomal RNA small subunit methyltransferase E; von Willebrand factor A 4771282..4772484 Runella slithyformis DSM 19594 10872685 YP_004657618.1 CDS Runsl_4141 NC_015703.1 4772559 4773263 D PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: dfe:Dfer_1502 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; SPTR: Response regulator; ribosomal RNA small subunit methyltransferase E 4772559..4773263 Runella slithyformis DSM 19594 10872686 YP_004657619.1 CDS Runsl_4142 NC_015703.1 4773394 4773798 D PFAM: LytTr DNA-binding domain; KEGG: sli:Slin_1353 hypothetical protein; SPTR: uncharacterized protein; response regulator receiver protein 4773394..4773798 Runella slithyformis DSM 19594 10872687 YP_004657620.1 CDS Runsl_4143 NC_015703.1 4773900 4774574 D COGs: COG1398 Fatty-acid desaturase; InterPro IPR005804; KEGG: sli:Slin_1354 fatty acid desaturase; PFAM: Fatty acid desaturase, type 1; SPTR: Fatty acid desaturase; hypothetical protein 4773900..4774574 Runella slithyformis DSM 19594 10872688 YP_004657621.1 CDS Runsl_4144 NC_015703.1 4774664 4775452 D PFAM: Fatty acid desaturase; COGs: COG4502 conserved hypothetical protein; InterPro IPR010708; KEGG: dfe:Dfer_0454 5 nucleotidase deoxy cytosolic type C; SPTR: 5 nucleotidase deoxy cytosolic type C; fatty acid desaturase 4774664..4775452 Runella slithyformis DSM 19594 10872689 YP_004657622.1 CDS Runsl_4145 NC_015703.1 4775514 4776041 R PFAM: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); KEGG: sli:Slin_3865 hypothetical protein; SPTR: uncharacterized protein; 5' nucleotidase complement(4775514..4776041) Runella slithyformis DSM 19594 10872690 YP_004657623.1 CDS Runsl_4146 NC_015703.1 4776211 4778022 D COGs: COG0045 Succinyl-CoA synthetase beta subunit; HAMAP: Succinyl-CoA ligase [ADP-forming] subunit beta; InterPro IPR005809:IPR013650:IPR005811; KEGG: dfe:Dfer_2736 succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; PRIAM: Succinate--CoA ligase (ADP-forming); SPTR: Succinyl-CoA ligase [ADP-forming] subunit beta; TIGRFAM: Succinyl-CoA synthetase, beta subunit; hypothetical protein 4776211..4778022 Runella slithyformis DSM 19594 10872691 YP_004657624.1 CDS Runsl_4147 NC_015703.1 4778083 4779309 R PFAM: CoA-ligase; ATP-grasp domain; TIGRFAM: succinyl-CoA synthetase, beta subunit; COGs: COG4330 membrane protein; InterPro IPR009793; KEGG: dfe:Dfer_0075 protein of unknown function DUF1361; PFAM: Protein of unknown function DUF1361; SPTR: uncharacterized protein; succinyl-CoA ligase (ADP-forming) subunit beta complement(4778083..4779309) Runella slithyformis DSM 19594 10872692 YP_004657625.1 CDS Runsl_4148 NC_015703.1 4779751 4780470 D PFAM: Protein of unknown function (DUF1361); COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011663; KEGG: bpo:BP951000_1878 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated; SMART: HTH transcriptional regulator, GntR; SPTR: UTRA domain-containing protein; hypothetical protein 4779751..4780470 Runella slithyformis DSM 19594 10872693 YP_004657626.1 CDS Runsl_4149 NC_015703.1 4780835 4781554 R PFAM: Bacterial regulatory proteins, gntR family; UTRA domain; COGs: COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); HAMAP: NAD(P)H-quinone oxidoreductase subunit 4L; InterPro IPR001133; KEGG: sli:Slin_4911 NADH-ubiquinone oxidoreductase chain 4L; PFAM: NADH:ubiquinone/quinone oxidoreductase, chain 4L; SPTR: NADH-quinone oxidoreductase subunit K 1; GntR family transcriptional regulator complement(4780835..4781554) Runella slithyformis DSM 19594 10872694 YP_004657627.1 CDS Runsl_4150 NC_015703.1 4781622 4781936 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; KEGG: sli:Slin_3137 hypothetical protein; SPTR: uncharacterized protein; NAD(P)H-quinone oxidoreductase subunit 4L 4781622..4781936 Runella slithyformis DSM 19594 10872695 YP_004657628.1 CDS Runsl_4151 NC_015703.1 4782029 4783315 D hypothetical protein 4782029..4783315 Runella slithyformis DSM 19594 10872696 YP_004657629.1 CDS Runsl_4152 NC_015703.1 4783331 4783495 D KEGG: dfe:Dfer_0219 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4783331..4783495 Runella slithyformis DSM 19594 10872697 YP_004657630.1 CDS Runsl_4153 NC_015703.1 4783492 4785066 R PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX); KEGG: sli:Slin_2311 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4783492..4785066) Runella slithyformis DSM 19594 10872698 YP_004657631.1 CDS Runsl_4154 NC_015703.1 4785276 4786526 R COGs: COG0442 Prolyl-tRNA synthetase; HAMAP: Prolyl-tRNA synthetase, class IIa, prokaryotic-type; InterPro IPR004499:IPR002314:IPR004154:IPR016061; KEGG: dfe:Dfer_0217 prolyl-tRNA synthetase; PFAM: Prolyl-tRNA synthetase, class II, C-terminal; Anticodon-binding; Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; PRIAM: Proline--tRNA ligase; SPTR: Prolyl-tRNA synthetase; TIGRFAM: Prolyl-tRNA synthetase, class IIa, prokaryotic-type; hypothetical protein complement(4785276..4786526) Runella slithyformis DSM 19594 10872699 YP_004657632.1 CDS Runsl_4155 NC_015703.1 4786937 4788412 D PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); Prolyl-tRNA synthetase, C-terminal; TIGRFAM: prolyl-tRNA synthetase, family I; COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: sli:Slin_2307 peptidylprolyl isomerase FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; prolyl-tRNA synthetase 4786937..4788412 Runella slithyformis DSM 19594 10872700 YP_004657633.1 CDS Runsl_4156 NC_015703.1 4788511 4788942 D PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; COGs: COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); HAMAP: NAD(P)H-quinone oxidoreductase subunit 3; InterPro IPR000440; KEGG: dfe:Dfer_2467 NADH-ubiquinone/plastoquinone oxidoreductase chain 3; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3; SPTR: NADH-quinone oxidoreductase subunit; FKBP-type peptidylprolyl isomerase 4788511..4788942 Runella slithyformis DSM 19594 10872701 YP_004657634.1 CDS Runsl_4157 NC_015703.1 4789033 4789500 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; COGs: COG3968 Uncharacterized protein related to glutamine synthetase; InterPro IPR008146; KEGG: sli:Slin_2431 glutamine synthetase; PFAM: Glutamine synthetase, catalytic region; SPTR: Glutamine synthetase catalytic region; NAD(P)H-quinone oxidoreductase subunit 3 complement(4789033..4789500) Runella slithyformis DSM 19594 10872702 YP_004657635.1 CDS Runsl_4158 NC_015703.1 4789646 4791826 R PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase type III N terminal; manually curated; glutamine synthetase complement(4789646..4791826) Runella slithyformis DSM 19594 10872703 YP_004657636.1 CDS Runsl_4160 NC_015703.1 4792288 4793622 D PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme; radical SAM methylthiotransferase, MiaB/RimO family; KEGG: mtt:Ftrac_1186 hypothetical protein; SPTR: uncharacterized protein; MiaB-like tRNA modifying protein 4792288..4793622 Runella slithyformis DSM 19594 10872705 YP_004657637.1 CDS Runsl_4161 NC_015703.1 4793648 4794007 R KEGG: dfe:Dfer_5063 NUMOD4 domain-containing protein; SPTR: NUMOD4 domain-containing protein; hypothetical protein complement(4793648..4794007) Runella slithyformis DSM 19594 10872706 YP_004657638.1 CDS Runsl_4162 NC_015703.1 4794127 4794699 D PFAM: NUMOD4 motif; COGs: COG2896 Molybdenum cofactor biosynthesis protein; InterPro IPR013483:IPR006638:IPR007197:IPR010505; KEGG: sli:Slin_4668 molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM; Molybdenum cofactor synthesis C-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: Molybdenum cofactor biosynthesis protein A; TIGRFAM: Molybdenum cofactor biosynthesis protein A; NUMOD4 domain-containing protein 4794127..4794699 Runella slithyformis DSM 19594 10872707 YP_004657639.1 CDS Runsl_4163 NC_015703.1 4794711 4795703 R PFAM: Molybdenum Cofactor Synthesis C; Radical SAM superfamily; TIGRFAM: molybdenum cofactor biosynthesis protein A, bacterial; COGs: COG1278 Cold shock protein; InterPro IPR011129:IPR002059; KEGG: ppn:Palpr_1708 cold-shock DNA-binding protein family; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding domain protein; molybdenum cofactor biosynthesis protein A complement(4794711..4795703) Runella slithyformis DSM 19594 10872708 YP_004657640.1 CDS Runsl_4164 NC_015703.1 4795889 4796080 D PFAM: 'Cold-shock' DNA-binding domain; SPTR: Transposase IS4 family protein; cold-shock DNA-binding domain-containing protein 4795889..4796080 Runella slithyformis DSM 19594 10872709 YP_004657641.1 CDS Runsl_4165 NC_015703.1 4796240 4797586 D COGs: COG0173 Aspartyl-tRNA synthetase; InterPro IPR004524:IPR004365:IPR004364:IPR004115; KEGG: sli:Slin_4178 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain; PRIAM: Aspartate--tRNA ligase; SPTR: Aspartyl-tRNA synthetase; TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; hypothetical protein 4796240..4797586 Runella slithyformis DSM 19594 10872710 YP_004657642.1 CDS Runsl_4166 NC_015703.1 4797742 4799499 D PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type; aspartyl-tRNA synthetase 4797742..4799499 Runella slithyformis DSM 19594 10872711 YP_004657643.1 CDS Runsl_4167 NC_015703.1 4799543 4799836 D KEGG: dfe:Dfer_3246 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4799543..4799836 Runella slithyformis DSM 19594 10872712 YP_004657644.1 CDS Runsl_4168 NC_015703.1 4800022 4801185 D KEGG: dfe:Dfer_3247 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4800022..4801185 Runella slithyformis DSM 19594 10872713 YP_004657645.1 CDS Runsl_4169 NC_015703.1 4801234 4802661 D KEGG: dfe:Dfer_4748 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4801234..4802661 Runella slithyformis DSM 19594 10872714 YP_004657646.1 CDS Runsl_4170 NC_015703.1 4802771 4803607 R InterPro IPR012910; KEGG: dfe:Dfer_4749 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; hypothetical protein complement(4802771..4803607) Runella slithyformis DSM 19594 10872715 YP_004657647.1 CDS Runsl_4171 NC_015703.1 4803612 4805948 R PFAM: TonB-dependent Receptor Plug Domain; TonB-dependent receptor plug complement(4803612..4805948) Runella slithyformis DSM 19594 10872716 YP_004657648.1 CDS Runsl_4172 NC_015703.1 4805967 4806461 R hypothetical protein complement(4805967..4806461) Runella slithyformis DSM 19594 10872717 YP_004657649.1 CDS Runsl_4173 NC_015703.1 4806661 4807380 R COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: psn:Pedsa_0209 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; hypothetical protein complement(4806661..4807380) Runella slithyformis DSM 19594 10872718 YP_004657650.1 CDS Runsl_4174 NC_015703.1 4807566 4808141 R PFAM: Cyclic nucleotide-binding domain; InterPro IPR000792; PFAM: Transcription regulator LuxR, C-terminal; Crp/Fnr family transcriptional regulator complement(4807566..4808141) Runella slithyformis DSM 19594 10872719 YP_004657651.1 CDS Runsl_4175 NC_015703.1 4808398 4808724 R PFAM: Bacterial regulatory proteins, luxR family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_1571 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; LuxR family transcriptional regulator complement(4808398..4808724) Runella slithyformis DSM 19594 10872720 YP_004657652.1 CDS Runsl_4176 NC_015703.1 4809035 4811224 R PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TonB-dependent receptor complement(4809035..4811224) Runella slithyformis DSM 19594 10872721 YP_004657653.1 CDS Runsl_4177 NC_015703.1 4811376 4811891 R COGs: COG0622 phosphoesterase; InterPro IPR000979:IPR004843; KEGG: dfe:Dfer_2380 phosphodiesterase, MJ0936 family; PFAM: Metallophosphoesterase; SPTR: Phosphodiesterase, MJ0936 family; TIGRFAM: Uncharacterised protein family UPF0025; hypothetical protein complement(4811376..4811891) Runella slithyformis DSM 19594 10872722 YP_004657654.1 CDS Runsl_4178 NC_015703.1 4811901 4812410 R PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family; COGs: COG1914 Mn2+ and Fe2+ transporter of the NRAMP family; KEGG: dfe:Dfer_4281 transmembrane transport protein; SPTR: transmembrane transport protein; phosphodiesterase complement(4811901..4812410) Runella slithyformis DSM 19594 10872723 YP_004657655.1 CDS Runsl_4179 NC_015703.1 4812437 4813681 R PFAM: Natural resistance-associated macrophage protein; InterPro IPR008815; KEGG: psl:Psta_2484 S23 ribosomal protein; PFAM: 23S rRNA-associated protein; SPTR: S23 ribosomal protein; transmembrane transport protein complement(4812437..4813681) Runella slithyformis DSM 19594 10872724 YP_004657656.1 CDS Runsl_4180 NC_015703.1 4813662 4814024 R PFAM: S23 ribosomal protein; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: sli:Slin_2999 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: o-succinylbenzoate--CoA ligase; SPTR: AMP-dependent synthetase and ligase; S23 ribosomal protein complement(4813662..4814024) Runella slithyformis DSM 19594 10872725 YP_004657657.1 CDS Runsl_4181 NC_015703.1 4814078 4815760 R PFAM: AMP-binding enzyme; KEGG: dfe:Dfer_2586 hypothetical protein; SPTR: uncharacterized protein; o-succinylbenzoate--CoA ligase complement(4814078..4815760) Runella slithyformis DSM 19594 10872726 YP_004657658.1 CDS Runsl_4182 NC_015703.1 4815953 4816945 R KEGG: sli:Slin_1374 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4815953..4816945) Runella slithyformis DSM 19594 10872727 YP_004657659.1 CDS Runsl_4183 NC_015703.1 4816912 4818996 R COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR011284:IPR002198; KEGG: sli:Slin_1373 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: 3-oxoacyl-(Acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; hypothetical protein complement(4816912..4818996) Runella slithyformis DSM 19594 10872728 YP_004657660.1 CDS Runsl_4184 NC_015703.1 4819133 4819879 R PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; KEGG: cts:Ctha_1277 hypothetical protein; SPTR: uncharacterized protein; 3-oxoacyl-ACP reductase complement(4819133..4819879) Runella slithyformis DSM 19594 10872729 YP_004657661.1 CDS Runsl_4185 NC_015703.1 4819916 4820497 R COGs: COG4637 ATPase; InterPro IPR003395; KEGG: cts:Ctha_1278 SMC domain-containing protein; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: SMC domain protein; hypothetical protein complement(4819916..4820497) Runella slithyformis DSM 19594 10872730 YP_004657662.1 CDS Runsl_4186 NC_015703.1 4820494 4821690 R PFAM: RecF/RecN/SMC N terminal domain; COGs: COG0279 Phosphoheptose isomerase; HAMAP: Phosphoheptose isomerase; InterPro IPR020620; KEGG: cpi:Cpin_3114 phosphoheptose isomerase; SPTR: Phosphoheptose isomerase; SMC domain-containing protein complement(4820494..4821690) Runella slithyformis DSM 19594 10872731 YP_004657663.1 CDS Runsl_4187 NC_015703.1 4821721 4822296 R TIGRFAM: phosphoheptose isomerase; COGs: COG3281 Uncharacterized protein probably involved in trehalose biosynthesis; KEGG: sli:Slin_0399 trehalose synthase-fused maltokinase-like protein; SPTR: Trehalose synthase-fused maltokinase-like protein; phosphoheptose isomerase complement(4821721..4822296) Runella slithyformis DSM 19594 10872732 YP_004657664.1 CDS Runsl_4188 NC_015703.1 4822366 4823922 R TIGRFAM: trehalose synthase-fused probable maltokinase; COGs: COG2936 acyl esterase; InterPro IPR005674:IPR000383:IPR013736; KEGG: shg:Sph21_2808 hydrolase CocE/NonD family protein; SPTR: Hydrolase CocE/NonD family protein; TIGRFAM: CocE/NonD hydrolase; trehalose synthase-fused maltokinase-like protein complement(4822366..4823922) Runella slithyformis DSM 19594 10872733 YP_004657665.1 CDS Runsl_4189 NC_015703.1 4823959 4825818 R PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: hydrolase, CocE/NonD family; COGs: COG1217 membrane GTPase involved in stress response; InterProIPR005225:IPR006298:IPR000795:IPR004161:IPR 000640; KEGG: dfe:Dfer_3399 GTP-binding protein TypA; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; SPTR: GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; hydrolase complement(4823959..4825818) Runella slithyformis DSM 19594 10872734 YP_004657666.1 CDS Runsl_4190 NC_015703.1 4826383 4828197 D PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain; GTP-binding protein TypA 4826383..4828197 Runella slithyformis DSM 19594 10872735 YP_004657667.1 CDS Runsl_4191 NC_015703.1 4828259 4828471 R hypothetical protein complement(4828259..4828471) Runella slithyformis DSM 19594 10872736 YP_004657668.1 CDS Runsl_4192 NC_015703.1 4828534 4828803 R hypothetical protein complement(4828534..4828803) Runella slithyformis DSM 19594 10872737 YP_004657669.1 CDS Runsl_4193 NC_015703.1 4829044 4829451 D COGs: COG0135 Phosphoribosylanthranilate isomerase; InterPro IPR001240; KEGG: sli:Slin_0371 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); SPTR: N-(5'-phosphoribosyl)anthranilate isomerase; hypothetical protein 4829044..4829451 Runella slithyformis DSM 19594 10872738 YP_004657670.1 CDS Runsl_4194 NC_015703.1 4829563 4830210 R PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: dfe:Dfer_2381 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28; N-(5'-phosphoribosyl)anthranilate isomerase complement(4829563..4830210) Runella slithyformis DSM 19594 10872739 YP_004657671.1 CDS Runsl_4195 NC_015703.1 4830213 4831424 R PFAM: Peptidase M28; COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: phe:Phep_0042 mechanosensitive ion channel MscS; PFAM: Mechanosensitive ion channel MscS; SPTR: MscS Mechanosensitive ion channel; peptidase M28 complement(4830213..4831424) Runella slithyformis DSM 19594 10872740 YP_004657672.1 CDS Runsl_4196 NC_015703.1 4831454 4832584 R PFAM: Mechanosensitive ion channel; COGs: COG1521 transcriptional regulator protein; HAMAP: Type III pantothenate kinase; InterPro IPR004619; KEGG: dfe:Dfer_5203 pantothenate kinase; PFAM: Bordetella pertussis Bvg accessory factor; SPTR: Type III pantothenate kinase 2; TIGRFAM: Bordetella pertussis Bvg accessory factor; mechanosensitive ion channel protein MscS complement(4831454..4832584) Runella slithyformis DSM 19594 10872741 YP_004657673.1 CDS Runsl_4197 NC_015703.1 4832730 4833476 D PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III; InterPro IPR005017; KEGG: sli:Slin_1298 hypothetical protein; PFAM: Membrane protein, aromatic hydrocarbon degradation; SPTR: uncharacterized protein; Baf family transcriptional acitvator 4832730..4833476 Runella slithyformis DSM 19594 10872742 YP_004657674.1 CDS Runsl_4198 NC_015703.1 4833460 4834737 D PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro IPR010664; KEGG: sli:Slin_1299 hypothetical protein; PFAM: Protein of unknown function DUF1239; SPTR: uncharacterized protein; aromatic hydrocarbon degradation membrane protein 4833460..4834737 Runella slithyformis DSM 19594 10872743 YP_004657675.1 CDS Runsl_4199 NC_015703.1 4834825 4835538 D PFAM: Protein of unknown function (DUF1239); COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR014327:IPR007627:IPR013249; KEGG: dfe:Dfer_0642 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; hypothetical protein 4834825..4835538 Runella slithyformis DSM 19594 10872744 YP_004657676.1 CDS Runsl_4200 NC_015703.1 4835669 4836382 D PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: dfe:Dfer_0641 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; ECF subfamily RNA polymerase sigma-24 subunit 4835669..4836382 Runella slithyformis DSM 19594 10872745 YP_004657677.1 CDS Runsl_4201 NC_015703.1 4836398 4837399 D PFAM: FecR protein; InterPro IPR012910:IPR000531; KEGG: phe:Phep_2893 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; anti-FecI sigma factor FecR 4836398..4837399 Runella slithyformis DSM 19594 10872746 YP_004657678.1 CDS Runsl_4202 NC_015703.1 4837420 4840827 D PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: phe:Phep_2892 RagB/SusD domain-containing protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 4837420..4840827 Runella slithyformis DSM 19594 10872747 YP_004657679.1 CDS Runsl_4203 NC_015703.1 4840851 4842713 D PFAM: SusD family; InterPro IPR010496; KEGG: bth:BT_3469 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; RagB/SusD domain-containing protein 4840851..4842713 Runella slithyformis DSM 19594 10872748 YP_004657680.1 CDS Runsl_4204 NC_015703.1 4842953 4844317 D PFAM: Domain of Unknown Function (DUF1080); InterPro IPR012910; KEGG: sli:Slin_2829 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; hypothetical protein 4842953..4844317 Runella slithyformis DSM 19594 10872749 YP_004657681.1 CDS Runsl_4205 NC_015703.1 4844386 4846830 R PFAM: TonB-dependent Receptor Plug Domain; KEGG: rbi:RB2501_03795 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug complement(4844386..4846830) Runella slithyformis DSM 19594 10872750 YP_004657682.1 CDS Runsl_4206 NC_015703.1 4846886 4848073 R KEGG: rbi:RB2501_03795 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4846886..4848073) Runella slithyformis DSM 19594 10872751 YP_004657683.1 CDS Runsl_4207 NC_015703.1 4848170 4849330 R KEGG: sli:Slin_5007 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4848170..4849330) Runella slithyformis DSM 19594 10872752 YP_004657684.1 CDS Runsl_4208 NC_015703.1 4849939 4851645 D KEGG: sli:Slin_4998 cytochrome c class I; SPTR: Cytochrome c class I; hypothetical protein 4849939..4851645 Runella slithyformis DSM 19594 10872753 YP_004657685.1 CDS Runsl_4209 NC_015703.1 4851778 4854072 D PFAM: Cytochrome c; KEGG: sli:Slin_5004 hypothetical protein; SPTR: uncharacterized protein; cytochrome c class I 4851778..4854072 Runella slithyformis DSM 19594 10872754 YP_004657686.1 CDS Runsl_4210 NC_015703.1 4854184 4857204 D PFAM: Cytochrome c; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sli:Slin_5003 sulfatase; PFAM: Sulfatase; PRIAM: Arylsulfatase; SPTR: Sulfatase; hypothetical protein 4854184..4857204 Runella slithyformis DSM 19594 10872755 YP_004657687.1 CDS Runsl_4211 NC_015703.1 4857329 4858936 D PFAM: Sulfatase; InterPro IPR013222:IPR019599:IPR008009:IPR000111; KEGG: phe:Phep_2887 alpha-galactosidase; PFAM: Glycosyl hydrolase 98, carbohydrate-binding module; Alpha-galactosidase, NEW1 domain; Ig; Glycoside hydrolase, clan GH-D; PRIAM: Alpha-galactosidase; SMART: Glycosyl hydrolase 98, carbohydrate-binding module; SPTR: Alpha-galactosidase; arylsulfatase 4857329..4858936 Runella slithyformis DSM 19594 10872756 YP_004657688.1 CDS Runsl_4212 NC_015703.1 4858936 4860996 D PFAM: NPCBM/NEW2 domain; Melibiase; He_PIG associated, NEW1 domain of bacterial glycohydrolase; Ig domain; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR003593:IPR005074:IPR001140:IPR003439; KEGG: shg:Sph21_0591 xenobiotic-transporting ATPase; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Bacteriocin ABC transporter, ATP-binding/permease; alpha-galactosidase 4858936..4860996 Runella slithyformis DSM 19594 10872757 YP_004657689.1 CDS Runsl_4213 NC_015703.1 4861234 4863453 R PFAM: ABC transporter; Peptidase C39 family; ABC transporter transmembrane region; InterPro IPR000866; KEGG: dfe:Dfer_1269 hypothetical protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein; xenobiotic-transporting ATPase complement(4861234..4863453) Runella slithyformis DSM 19594 10872758 YP_004657690.1 CDS Runsl_4214 NC_015703.1 4863595 4864116 R PFAM: AhpC/TSA family; KEGG: shg:Sph21_0589 hypothetical protein; SPTR: uncharacterized protein; alkyl hydroperoxide reductase complement(4863595..4864116) Runella slithyformis DSM 19594 10872759 YP_004657691.1 CDS Runsl_4215 NC_015703.1 4864123 4864788 R hypothetical protein complement(4864123..4864788) Runella slithyformis DSM 19594 10872760 YP_004657692.1 CDS Runsl_4216 NC_015703.1 4864823 4864987 R hypothetical protein complement(4864823..4864987) Runella slithyformis DSM 19594 10872761 YP_004657693.1 CDS Runsl_4217 NC_015703.1 4865053 4865250 R hypothetical protein complement(4865053..4865250) Runella slithyformis DSM 19594 10872762 YP_004657694.1 CDS Runsl_4218 NC_015703.1 4865282 4865479 R hypothetical protein complement(4865282..4865479) Runella slithyformis DSM 19594 10872763 YP_004657695.1 CDS Runsl_4219 NC_015703.1 4865847 4866098 D KEGG: psn:Pedsa_0209 transcriptional regulator, Crp/Fnr family; SPTR: Cyclic nucleotide binding regulatory protein; hypothetical protein 4865847..4866098 Runella slithyformis DSM 19594 10872764 YP_004657696.1 CDS Runsl_4220 NC_015703.1 4866044 4866466 D SPTR: uncharacterized protein; Crp/Fnr family transcriptional regulator 4866044..4866466 Runella slithyformis DSM 19594 10872765 YP_004657697.1 CDS Runsl_4221 NC_015703.1 4866639 4866818 D InterPro IPR013148; KEGG: shg:Sph21_5081 glycosyl hydrolase 32 domain protein; PFAM: Glycosyl hydrolases family 32, N-terminal; SPTR: uncharacterized protein; hypothetical protein 4866639..4866818 Runella slithyformis DSM 19594 10872766 YP_004657698.1 CDS Runsl_4222 NC_015703.1 4866996 4867997 D PFAM: Glycosyl hydrolases family 32 N-terminal domain; Glycosyl hydrolases family 43; InterPro IPR013428:IPR003088; KEGG: sli:Slin_5000 dehydrogenase; PFAM: Cytochrome c, class I; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; glycosyl hydrolase 32 domain-containing protein 4866996..4867997 Runella slithyformis DSM 19594 10872767 YP_004657699.1 CDS Runsl_4223 NC_015703.1 4868017 4870284 D PFAM: Cytochrome c; KEGG: ote:Oter_4283 alpha/beta hydrolase domain-containing protein; PRIAM: Alpha-L-fucosidase; SPTR: Alpha/beta hydrolase fold-3 domain protein; membrane-bound dehydrogenase domain-containing protein 4868017..4870284 Runella slithyformis DSM 19594 10872768 YP_004657700.1 CDS Runsl_4224 NC_015703.1 4870268 4872757 D COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469:IPR001375; KEGG: pdi:BDI_2246 dipeptidyl aminopeptidase; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; Peptidase S9, prolyl oligopeptidase, catalytic domain; PRIAM: Dipeptidyl-peptidase IV; SPTR: Dipeptidyl aminopeptidase; alpha-L-fucosidase 4870268..4872757 Runella slithyformis DSM 19594 10872769 YP_004657701.1 CDS Runsl_4225 NC_015703.1 4872810 4875044 D PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region; KEGG: scb:SCAB_0601 hypothetical protein; SPTR: uncharacterized protein; dipeptidyl-peptidase IV 4872810..4875044 Runella slithyformis DSM 19594 10872770 YP_004657702.1 CDS Runsl_4226 NC_015703.1 4875284 4876663 D hypothetical protein 4875284..4876663 Runella slithyformis DSM 19594 10872771 YP_004657703.1 CDS Runsl_4227 NC_015703.1 4876826 4876981 R InterPro IPR011462; KEGG: psn:Pedsa_0083 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4876826..4876981) Runella slithyformis DSM 19594 10872772 YP_004657704.1 CDS Runsl_4228 NC_015703.1 4876978 4877532 R PFAM: Transposase IS200 like; Prodigal; manually curated; hypothetical protein complement(4876978..4877532) Runella slithyformis DSM 19594 10872773 YP_004657705.1 CDS Runsl_4230 NC_015703.1 4878731 4879591 R PFAM: Sulfite exporter TauE/SafE; COGs: COG1760 L-serine deaminase; InterPro IPR005131:IPR005130; KEGG: rba:RB8979 L-serine dehydratase, alpha chain; PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain; SPTR: Probable L-serine dehydratase, alpha chain; hypothetical protein complement(4878731..4879591) Runella slithyformis DSM 19594 10872775 YP_004657706.1 CDS Runsl_4231 NC_015703.1 4879798 4881330 D PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit; L-serine dehydratase, iron-sulfur-dependent, alpha subunit; KEGG: pno:SNOG_14897 hypothetical protein; SPTR: uncharacterized protein; serine dehydratase subunit alpha 4879798..4881330 Runella slithyformis DSM 19594 10872776 YP_004657707.1 CDS Runsl_4232 NC_015703.1 4881392 4882951 D KEGG: sli:Slin_4999 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4881392..4882951 Runella slithyformis DSM 19594 10872777 YP_004657708.1 CDS Runsl_4233 NC_015703.1 4882964 4883800 D PFAM: Alkaline phytoceramidase (aPHC); InterPro IPR002860; KEGG: sli:Slin_1563 glycosyl hydrolase, BNR repeat-containing protein; PFAM: BNR repeat; SPTR: Glycosyl hydrolase, BNR repeat-containing protein; hypothetical protein 4882964..4883800 Runella slithyformis DSM 19594 10872778 YP_004657709.1 CDS Runsl_4234 NC_015703.1 4883905 4887117 D PFAM: BNR/Asp-box repeat; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sli:Slin_4996 sulfatase; PFAM: Sulfatase; SPTR: Sulfatase; glycosyl hydrolase family protein 4883905..4887117 Runella slithyformis DSM 19594 10872779 YP_004657710.1 CDS Runsl_4235 NC_015703.1 4887176 4888714 D PFAM: Sulfatase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: sli:Slin_4997 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; sulfatase 4887176..4888714 Runella slithyformis DSM 19594 10872780 YP_004657711.1 CDS Runsl_4236 NC_015703.1 4888761 4890080 D PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; InterPro IPR003088; KEGG: sli:Slin_1300 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I; oxidoreductase domain-containing protein 4888761..4890080 Runella slithyformis DSM 19594 10872781 YP_004657712.1 CDS Runsl_4237 NC_015703.1 4890127 4890558 R PFAM: Cytochrome c; COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; InterPro IPR003782; KEGG: dfe:Dfer_5207 electron transport protein SCO1/SenC; PFAM: Copper chaperone SCO1/SenC; SPTR: Electron transport protein SCO1/SenC; cytochrome c class I complement(4890127..4890558) Runella slithyformis DSM 19594 10872782 YP_004657713.1 CDS Runsl_4238 NC_015703.1 4890636 4891274 R PFAM: SCO1/SenC; KEGG: dfe:Dfer_5208 viral A-type inclusion protein; SPTR: Viral A-type inclusion protein; electron transport protein SCO1/SenC complement(4890636..4891274) Runella slithyformis DSM 19594 10872783 YP_004657714.1 CDS Runsl_4239 NC_015703.1 4891303 4891734 R COGs: COG0497 ATPase involved in DNA repair; InterPro IPR004604:IPR003395; KEGG: sli:Slin_1303 DNA repair protein RecN; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; viral A-type inclusion protein complement(4891303..4891734) Runella slithyformis DSM 19594 10872784 YP_004657715.1 CDS Runsl_4240 NC_015703.1 4891773 4893464 R PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN; DNA repair protein RecN complement(4891773..4893464) Runella slithyformis DSM 19594 10872785 YP_004657716.1 CDS Runsl_4241 NC_015703.1 4893539 4893766 R KEGG: sli:Slin_1304 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4893539..4893766) Runella slithyformis DSM 19594 10872786 YP_004657717.1 CDS Runsl_4242 NC_015703.1 4893780 4894709 R COGs: COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; InterPro IPR005252:IPR003382:IPR007085; KEGG: sli:Slin_1305 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: Flavoprotein; DNA/pantothenate metabolism flavoprotein, C-terminal; PRIAM: Phosphopantothenate--cysteine ligase; SPTR: Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; hypothetical protein complement(4893780..4894709) Runella slithyformis DSM 19594 10872787 YP_004657718.1 CDS Runsl_4243 NC_015703.1 4894743 4895954 R PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic; KEGG: sli:Slin_1306 hypothetical protein; SPTR: uncharacterized protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase complement(4894743..4895954) Runella slithyformis DSM 19594 10872788 YP_004657719.1 CDS Runsl_4244 NC_015703.1 4896036 4896344 R COGs: COG4105 DNA uptake lipoprotein; InterPro IPR017689; KEGG: dfe:Dfer_5214 outer membrane assembly lipoprotein YfiO; SPTR: Outer membrane assembly lipoprotein YfiO; TIGRFAM: Outer membrane assembly lipoprotein YfiO; hypothetical protein complement(4896036..4896344) Runella slithyformis DSM 19594 10872789 YP_004657720.1 CDS Runsl_4245 NC_015703.1 4896374 4897282 R TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: sli:Slin_1308 hypothetical protein; SPTR: uncharacterized protein; outer membrane assembly lipoprotein YfiO complement(4896374..4897282) Runella slithyformis DSM 19594 10872790 YP_004657721.1 CDS Runsl_4246 NC_015703.1 4897378 4898004 R KEGG: sli:Slin_1309 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4897378..4898004) Runella slithyformis DSM 19594 10872791 YP_004657722.1 CDS Runsl_4247 NC_015703.1 4898164 4900125 R COGs: COG0657 Esterase/lipase; InterPro IPR001375; KEGG: sli:Slin_1531 esterase/lipase-like protein; SPTR: Esterase/lipase-like protein; hypothetical protein complement(4898164..4900125) Runella slithyformis DSM 19594 10872792 YP_004657723.1 CDS Runsl_4248 NC_015703.1 4900533 4901477 D PFAM: alpha/beta hydrolase fold; COGs: COG2272 Carboxylesterase type B; InterPro IPR002018; KEGG: rbi:RB2501_01206 esterase; PFAM: Carboxylesterase, type B; PRIAM: Carboxylesterase; SPTR: esterase; esterase 4900533..4901477 Runella slithyformis DSM 19594 10872793 YP_004657724.1 CDS Runsl_4249 NC_015703.1 4901675 4903198 D PFAM: Carboxylesterase; InterPro IPR006311; KEGG: dfe:Dfer_3262 hypothetical protein; SPTR: uncharacterized protein; carboxylesterase 4901675..4903198 Runella slithyformis DSM 19594 10872794 YP_004657725.1 CDS Runsl_4250 NC_015703.1 4903209 4904510 D TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; KEGG: cph:Cpha266_0450 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4903209..4904510 Runella slithyformis DSM 19594 10872795 YP_004657726.1 CDS Runsl_4251 NC_015703.1 4904601 4905101 R PFAM: Oxidoreductase molybdopterin binding domain; COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550:IPR000644:IPR005170; KEGG: fps:FP1358 hypothetical protein; PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated region; SPTR: uncharacterized protein; hypothetical protein complement(4904601..4905101) Runella slithyformis DSM 19594 10872796 YP_004657727.1 CDS Runsl_4252 NC_015703.1 4905098 4906399 R PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain; hypothetical protein complement(4905098..4906399) Runella slithyformis DSM 19594 10872797 YP_004657728.1 CDS Runsl_4253 NC_015703.1 4906534 4906851 D KEGG: shg:Sph21_2865 alpha-L-fucosidase; PRIAM: Alpha-L-fucosidase; SPTR: Alpha-L-fucosidase; hypothetical protein 4906534..4906851 Runella slithyformis DSM 19594 10872798 YP_004657729.1 CDS Runsl_4254 NC_015703.1 4907175 4909817 D COGs: COG1501 Alpha-glucosidase 31 of glycosyl hydrolase; InterPro IPR000322; KEGG: phe:Phep_2697 glycoside hydrolase 31; PFAM: Glycoside hydrolase, family 31; PRIAM: Alpha-glucosidase; SPTR: Glycoside hydrolase 31; alpha-L-fucosidase 4907175..4909817 Runella slithyformis DSM 19594 10872799 YP_004657730.1 CDS Runsl_4255 NC_015703.1 4909814 4911970 D PFAM: Glycosyl hydrolases family 31; KEGG: sli:Slin_4611 hypothetical protein; SPTR: uncharacterized protein; alpha-glucosidase 4909814..4911970 Runella slithyformis DSM 19594 10872800 YP_004657731.1 CDS Runsl_4256 NC_015703.1 4912563 4914770 R PFAM: Domain of unknown function (DUF1083); COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR011659:IPR001375; KEGG: sli:Slin_6131 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein; hypothetical protein complement(4912563..4914770) Runella slithyformis DSM 19594 10872801 YP_004657732.1 CDS Runsl_4257 NC_015703.1 4915094 4917103 R PFAM: Prolyl oligopeptidase; WD40-like Beta Propeller Repeat; peptidase S9 prolyl oligopeptidase active site domain-containing protein complement(4915094..4917103) Runella slithyformis DSM 19594 10872802 YP_004657733.1 CDS Runsl_4258 NC_015703.1 4917383 4917562 D COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; InterPro IPR011810:IPR003135:IPR013221:IPR004101; KEGG: llo:LLO_2537 cyanophycin synthetase; PFAM: Mur ligase, central; ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; Mur ligase, C-terminal; PRIAM: Cyanophycin synthase (L-aspartate-adding); SPTR: Cyanophycin synthetase; TIGRFAM: Cyanophycin synthetase; hypothetical protein 4917383..4917562 Runella slithyformis DSM 19594 10872803 YP_004657734.1 CDS Runsl_4259 NC_015703.1 4917606 4920242 D PFAM: RimK-like ATP-grasp domain; Mur ligase, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: cyanophycin synthetase; COGs: COG4242 Cyanophycinase and related exopeptidase; InterPro IPR011811:IPR005320; KEGG: llo:LLO_2536 cyanophycinase; PFAM: Peptidase S51, dipeptidase E; PRIAM: Cyanophycinase; SPTR: cyanophycinase; TIGRFAM: Cyanophycinase; cyanophycin synthetase 4917606..4920242 Runella slithyformis DSM 19594 10872804 YP_004657735.1 CDS Runsl_4260 NC_015703.1 4920285 4921154 D PFAM: Peptidase S51; TIGRFAM: cyanophycinase; COGs: COG1446 Asparaginase; InterPro IPR000246; KEGG: llo:LLO_2535 isoaspartyl dipeptidase with L-asparaginase activity; PFAM: Peptidase T2, asparaginase 2; PRIAM: Beta-aspartyl-peptidase; SPTR: Peptidase T2, asparaginase 2; cyanophycinase 4920285..4921154 Runella slithyformis DSM 19594 10872805 YP_004657736.1 CDS Runsl_4261 NC_015703.1 4921151 4922083 D PFAM: Asparaginase; COGs: COG4930 ATP-dependent Lon-type protease; InterPro IPR013473:IPR014061; KEGG: sku:Sulku_1697 ATP-dependent lon-type protease; SPTR: ATP-dependent Lon-type protease; TIGRFAM: Conserved hypothetical protein CHP02653, peptidase S16 non-peptidase homologue; Conserved hypothetical protein CHP02688; beta-aspartyl-peptidase 4921151..4922083 Runella slithyformis DSM 19594 10872806 YP_004657737.1 CDS Runsl_4262 NC_015703.1 4922398 4924425 R PFAM: Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: TIGR02688 family protein; conserved hypothetical protein; InterPro IPR014060:IPR013973; KEGG: maq:Maqu_0564 alkaline phosphatase domain-containing protein; PFAM: PglZ domain; SPTR: PglZ domain; TIGRFAM: Conserved hypothetical protein CHP02687; hypothetical protein complement(4922398..4924425) Runella slithyformis DSM 19594 10872807 YP_004657738.1 CDS Runsl_4263 NC_015703.1 4924435 4926948 R PFAM: PglZ domain; TIGRFAM: TIGR02687 family protein; COGs: COG2865 transcriptional regulator protein; InterPro IPR007421:IPR000607; KEGG: bvu:BVU_1498 hypothetical protein; PFAM: ATPase associated with various cellular activities, AAA-4; Double-stranded RNA-specific adenosine deaminase (DRADA); SPTR: uncharacterized protein; hypothetical protein complement(4924435..4926948) Runella slithyformis DSM 19594 10872808 YP_004657739.1 CDS Runsl_4264 NC_015703.1 4926952 4928316 R PFAM: Divergent AAA domain; COGs: COG3550 conserved hypothetical protein; InterPro IPR012894:IPR012893; KEGG: cpc:Cpar_0148 HipA domain-containing protein; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; SPTR: HipA domain protein; transcriptional regulator complement(4926952..4928316) Runella slithyformis DSM 19594 10872809 YP_004657740.1 CDS Runsl_4265 NC_015703.1 4928313 4929260 R PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain; InterPro IPR017508; KEGG: cpc:Cpar_0147 HipA N-terminal domain-containing protein; SPTR: HipA N-terminal domain protein; TIGRFAM: HipA, N-terminal; HipA domain-containing protein complement(4928313..4929260) Runella slithyformis DSM 19594 10872810 YP_004657741.1 CDS Runsl_4266 NC_015703.1 4929257 4929592 R TIGRFAM: HipA N-terminal domain; InterPro IPR017507:IPR001387; KEGG: bvu:BVU_1930 transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: transcriptional regulator; TIGRFAM: Transcriptional regulator, HipB-like; HipA N-terminal domain-containing protein complement(4929257..4929592) Runella slithyformis DSM 19594 10872811 YP_004657742.1 CDS Runsl_4267 NC_015703.1 4929579 4929800 R PFAM: Helix-turn-helix; TIGRFAM: transcriptional regulator, y4mF family; COGs: COG1002 Type II restriction enzyme methylase subunits; KEGG: cpb:Cphamn1_1677 hypothetical protein; SPTR: uncharacterized protein; transcriptional regulator complement(4929579..4929800) Runella slithyformis DSM 19594 10872812 YP_004657743.1 CDS Runsl_4268 NC_015703.1 4929912 4933271 R PFAM: Eco57I restriction endonuclease; KEGG: cyh:Cyan8802_2210 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4929912..4933271) Runella slithyformis DSM 19594 10872813 YP_004657744.1 CDS Runsl_4269 NC_015703.1 4933430 4936951 R InterPro IPR014858; KEGG: sku:Sulku_1687 hypothetical protein; PFAM: Protein of unknown function DUF1788; SPTR: uncharacterized protein; hypothetical protein complement(4933430..4936951) Runella slithyformis DSM 19594 10872814 YP_004657745.1 CDS Runsl_4270 NC_015703.1 4936956 4937549 R PFAM: Domain of unknown function (DUF1788); InterPro IPR014948; KEGG: sku:Sulku_1686 hypothetical protein; PFAM: Protein of unknown function DUF1819, inner membrane; SPTR: uncharacterized protein; hypothetical protein complement(4936956..4937549) Runella slithyformis DSM 19594 10872815 YP_004657746.1 CDS Runsl_4271 NC_015703.1 4937552 4938169 R PFAM: inner membrane protein (DUF1819); SPTR: Transposase IS4 family protein; hypothetical protein complement(4937552..4938169) Runella slithyformis DSM 19594 10872816 YP_004657747.1 CDS Runsl_4272 NC_015703.1 4938766 4940112 R Prodigal; manually curated; hypothetical protein complement(4938766..4940112) Runella slithyformis DSM 19594 10872817 YP_004657748.1 CDS Runsl_4275 NC_015703.1 4943816 4945027 R PFAM: Transposase, Mutator family; COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; KEGG: rrs:RoseRS_0056 AAA ATPase; SPTR: Superfamily I DNA/RNA helicase; transposase mutator type complement(4943816..4945027) Runella slithyformis DSM 19594 10872820 YP_004657749.1 CDS Runsl_4276 NC_015703.1 4945137 4946852 R PFAM: Type III restriction enzyme, res subunit; KEGG: dae:Dtox_1537 transcriptional regulator; SPTR: uncharacterized protein; hypothetical protein complement(4945137..4946852) Runella slithyformis DSM 19594 10872821 YP_004657750.1 CDS Runsl_4277 NC_015703.1 4946839 4951584 R COGs: COG1483 ATPase (AAA+ superfamily); InterPro IPR007555; KEGG: dau:Daud_0361 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(4946839..4951584) Runella slithyformis DSM 19594 10872822 YP_004657751.1 CDS Runsl_4278 NC_015703.1 4951748 4955032 R PFAM: Protein of unknown function (DUF499); Prodigal; This gene is disrupted by insertion of repetitive element; manually curated; hypothetical protein complement(4951748..4955032) Runella slithyformis DSM 19594 10872823 YP_004657752.1 CDS Runsl_4280 NC_015703.1 4955636 4956982 D KEGG: lba:Lebu_1515 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4955636..4956982 Runella slithyformis DSM 19594 10872825 YP_004657753.1 CDS Runsl_4281 NC_015703.1 4959657 4960685 R COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001:IPR001650:IPR006935; KEGG: cki:Calkr_0708 helicase domain-containing protein; PFAM: DNA/RNA helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal; SPTR: Helicase domain-containing protein; hypothetical protein complement(4959657..4960685) Runella slithyformis DSM 19594 10872826 YP_004657754.1 CDS Runsl_4282 NC_015703.1 4960682 4964128 R PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain; helicase complement(4960682..4964128) Runella slithyformis DSM 19594 10872827 YP_004657755.1 CDS Runsl_4283 NC_015703.1 4965196 4965438 R Prodigal; manually curated; hypothetical protein complement(4965196..4965438) Runella slithyformis DSM 19594 10872828 YP_004657756.1 CDS Runsl_4285 NC_015703.1 4966380 4966634 R Prodigal; manually curated; hypothetical protein complement(4966380..4966634) Runella slithyformis DSM 19594 10872830 YP_004657757.1 CDS Runsl_4287 NC_015703.1 4968265 4969725 R PFAM: Divergent AAA domain; InterPro IPR002145; PFAM: CopG-like DNA-binding; transcriptional regulator complement(4968265..4969725) Runella slithyformis DSM 19594 10872832 YP_004657758.1 CDS Runsl_4288 NC_015703.1 4970015 4970632 R PFAM: Ribbon-helix-helix protein, copG family; KEGG: shg:Sph21_3498 VirE protein; SPTR: uncharacterized protein; CopG family transcriptional regulator complement(4970015..4970632) Runella slithyformis DSM 19594 10872833 YP_004657759.1 CDS Runsl_4289 NC_015703.1 4971114 4973747 R hypothetical protein complement(4971114..4973747) Runella slithyformis DSM 19594 10872834 YP_004657760.1 CDS Runsl_4290 NC_015703.1 4973878 4974171 R hypothetical protein complement(4973878..4974171) Runella slithyformis DSM 19594 10872835 YP_004657761.1 CDS Runsl_4291 NC_015703.1 4974291 4975100 R InterPro IPR002104; KEGG: pdi:BDI_0498 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Integrase; manually curated; hypothetical protein complement(4974291..4975100) Runella slithyformis DSM 19594 10872836 YP_004657762.1 CDS Runsl_4292 NC_015703.1 4975069 4976310 R PFAM: Phage integrase; integrase complement(4975069..4976310) Runella slithyformis DSM 19594 10872837 YP_004657763.1 CDS Runsl_4293 NC_015703.1 4976857 4977957 D PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family; COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: sli:Slin_3124 hypothetical protein; PFAM: Protein of unknown function DUF164; SPTR: uncharacterized protein; NGG1p interacting factor 3 protein, NIF3 4976857..4977957 Runella slithyformis DSM 19594 10872839 YP_004657764.1 CDS Runsl_4294 NC_015703.1 4978000 4978731 D PFAM: zinc ribbon domain; COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: sli:Slin_1640 sodium solute transporter; PFAM: Sodium/solute symporter; SPTR: SSS sodium solute transporter superfamily; hypothetical protein 4978000..4978731 Runella slithyformis DSM 19594 10872840 YP_004657765.1 CDS Runsl_4295 NC_015703.1 4978850 4980547 R PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; Na+/solute symporter complement(4978850..4980547) Runella slithyformis DSM 19594 10872841 YP_004657766.1 CDS Runsl_4296 NC_015703.1 4980641 4980805 R COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: prw:PsycPRwf_1005 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: 3-oxoacyl-acyl-carrier-protein reductase; hypothetical protein complement(4980641..4980805) Runella slithyformis DSM 19594 10872842 YP_004657767.1 CDS Runsl_4297 NC_015703.1 4981023 4981778 D PFAM: short chain dehydrogenase; KEGG: lbf:LBF_3189 hypothetical protein; SPTR: uncharacterized protein; 3-oxoacyl-ACP reductase 4981023..4981778 Runella slithyformis DSM 19594 10872843 YP_004657768.1 CDS Runsl_4298 NC_015703.1 4981886 4982362 D COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_1313 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Carbonyl reductase (NADPH); SPTR: Short-chain dehydrogenase/reductase SDR; hypothetical protein 4981886..4982362 Runella slithyformis DSM 19594 10872844 YP_004657769.1 CDS Runsl_4299 NC_015703.1 4982409 4983185 D PFAM: short chain dehydrogenase; COGs: COG0262 Dihydrofolate reductase; InterPro IPR001796; KEGG: dfe:Dfer_4255 dihydrofolate reductase; PFAM: Dihydrofolate reductase region; SPTR: Dihydrofolate reductase; carbonyl reductase 4982409..4983185 Runella slithyformis DSM 19594 10872845 YP_004657770.1 CDS Runsl_4300 NC_015703.1 4983233 4983724 R PFAM: Dihydrofolate reductase; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_1311 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein; dihydrofolate reductase subunit complement(4983233..4983724) Runella slithyformis DSM 19594 10872846 YP_004657771.1 CDS Runsl_4301 NC_015703.1 4984039 4986369 R PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; HAMAP: tRNA(Ile)-lysidine synthase; InterPro IPR012795:IPR012796:IPR011063; KEGG: chu:CHU_3018 tRNA(Ile)-lysidine synthetase; PFAM: PP-loop; SPTR: tRNA(Ile)-lysidine synthase; TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; Lysidine-tRNA(Ile) synthetase, C-terminal; OmpA/MotB domain-containing protein complement(4984039..4986369) Runella slithyformis DSM 19594 10872847 YP_004657772.1 CDS Runsl_4302 NC_015703.1 4986515 4987834 R PFAM: TilS substrate C-terminal domain; PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, C-terminal domain; tRNA(Ile)-lysidine synthetase, N-terminal domain; InterPro IPR006311:IPR012307; KEGG: dfe:Dfer_0589 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; tRNA(Ile)-lysidine synthase complement(4986515..4987834) Runella slithyformis DSM 19594 10872848 YP_004657773.1 CDS Runsl_4303 NC_015703.1 4987931 4988926 R PFAM: Xylose isomerase-like TIM barrel; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR003088:IPR005084; KEGG: dfe:Dfer_2188 cytochrome c class I; PFAM: Cytochrome c, class I; PKD; Carbohydrate binding domain, family 6; SMART: PKD; SPTR: Cytochrome c class I; xylose isomerase domain-containing protein complement(4987931..4988926) Runella slithyformis DSM 19594 10872849 YP_004657774.1 CDS Runsl_4304 NC_015703.1 4988992 4992738 R PFAM: Cytochrome c; Trehalose utilisation; Carbohydrate binding module (family 6); PKD domain; Domain of unknown function (DUF3471); COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: dfe:Dfer_2189 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; cytochrome c class I complement(4988992..4992738) Runella slithyformis DSM 19594 10872850 YP_004657775.1 CDS Runsl_4305 NC_015703.1 4992791 4993621 D PFAM: NUDIX domain; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593:IPR001140:IPR003439; KEGG: phe:Phep_0117 ABC transporter-like protein; PFAM: ABC transporter-like; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; NUDIX hydrolase 4992791..4993621 Runella slithyformis DSM 19594 10872851 YP_004657776.1 CDS Runsl_4306 NC_015703.1 4993789 4995546 D PFAM: ABC transporter; ABC transporter transmembrane region; xenobiotic-transporting ATPase 4993789..4995546 Runella slithyformis DSM 19594 10872852 YP_004657777.1 CDS Runsl_4307 NC_015703.1 4995550 4995999 R hypothetical protein complement(4995550..4995999) Runella slithyformis DSM 19594 10872853 YP_004657778.1 CDS Runsl_4308 NC_015703.1 4996271 4996726 R COGs: COG0520 Selenocysteine lyase; InterPro IPR006311:IPR000192; KEGG: sli:Slin_1756 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Isopenicillin-N epimerase; SPTR: Aminotransferase class V; hypothetical protein complement(4996271..4996726) Runella slithyformis DSM 19594 10872854 YP_004657779.1 CDS Runsl_4309 NC_015703.1 4996930 4998234 D PFAM: Aminotransferase class-V; isopenicillin-N epimerase 4996930..4998234 Runella slithyformis DSM 19594 10872855 YP_004657780.1 CDS Runsl_4310 NC_015703.1 4998381 4998506 R COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: rlg:Rleg_0575 LemA family protein; PFAM: LemA; SPTR: LemA family protein; hypothetical protein complement(4998381..4998506) Runella slithyformis DSM 19594 10872856 YP_004657781.1 CDS Runsl_4311 NC_015703.1 4998817 4999344 D PFAM: LemA family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: ran:Riean_1895 RNA polymerase, sigma-24 subunit, ecf subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; LemA family protein 4998817..4999344 Runella slithyformis DSM 19594 10872857 YP_004657782.1 CDS Runsl_4312 NC_015703.1 4999463 4999948 D PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: sli:Slin_6311 hypothetical protein; SPTR: uncharacterized protein; ECF subfamily RNA polymerase sigma-24 subunit 4999463..4999948 Runella slithyformis DSM 19594 10872858 YP_004657783.1 CDS Runsl_4313 NC_015703.1 4999952 5000584 D hypothetical protein 4999952..5000584 Runella slithyformis DSM 19594 10872859 YP_004657784.1 CDS Runsl_4314 NC_015703.1 5000634 5001134 D COGs: COG3735 conserved hypothetical protein; InterPro IPR010891; KEGG: sli:Slin_6313 GumN family protein; PFAM: GumN; SPTR: GumN family protein; hypothetical protein 5000634..5001134 Runella slithyformis DSM 19594 10872860 YP_004657785.1 CDS Runsl_4315 NC_015703.1 5001156 5002004 D PFAM: GumN protein; COGs: COG2103 sugar phosphate isomerase; HAMAP: N-acetylmuramic acid 6-phosphate etherase; InterPro IPR005488; KEGG: dfe:Dfer_3685 N-acetylmuramic acid-6-phosphate etherase; SPTR: Glucokinase regulatory-like protein; TIGRFAM: Glucokinase regulatory-like protein; GumN family protein 5001156..5002004 Runella slithyformis DSM 19594 10872861 YP_004657786.1 CDS Runsl_4316 NC_015703.1 5002257 5003075 R PFAM: SIS domain; TIGRFAM: N-acetylmuramic acid 6-phosphate etherase; COGs: COG0688 Phosphatidylserine decarboxylase; HAMAP: Phosphatidylserine decarboxylase proenzyme; InterPro IPR004428:IPR003817; KEGG: dfe:Dfer_3556 phosphatidylserine decarboxylase; PFAM: Phosphatidylserine decarboxylase-related; PRIAM: Phosphatidylserine decarboxylase; SPTR: Phosphatidylserine decarboxylase proenzyme; TIGRFAM: Phosphatidylserine decarboxylase-related protein; N-acetylmuramic acid 6-phosphate etherase complement(5002257..5003075) Runella slithyformis DSM 19594 10872862 YP_004657787.1 CDS Runsl_4317 NC_015703.1 5003119 5003778 R PFAM: Phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase precursor-related protein; COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006097:IPR006096; KEGG: sli:Slin_5648 Glu/Leu/Phe/Val dehydrogenase; PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation region; PRIAM: Glutamate dehydrogenase (NAD(P)(+)); SPTR: Glu/Leu/Phe/Val dehydrogenase; phosphatidylserine decarboxylase proenzyme complement(5003119..5003778) Runella slithyformis DSM 19594 10872863 YP_004657788.1 CDS Runsl_4318 NC_015703.1 5003885 5005162 R PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; KEGG: sli:Slin_5647 TraR/DksA family transcriptional regulator; SPTR: Transcriptional regulator, TraR/DksA family; glutamate dehydrogenase (NAD(P)(+)) complement(5003885..5005162) Runella slithyformis DSM 19594 10872864 YP_004657789.1 CDS Runsl_4319 NC_015703.1 5005545 5005928 D PFAM: Prokaryotic dksA/traR C4-type zinc finger; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_2659 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 2,4-dienoyl-CoA reductase (NADPH); SPTR: Short-chain dehydrogenase/reductase SDR; TraR/DksA family transcriptional regulator 5005545..5005928 Runella slithyformis DSM 19594 10872865 YP_004657790.1 CDS Runsl_4320 NC_015703.1 5006030 5006929 R PFAM: short chain dehydrogenase; COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: mtt:Ftrac_2341 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR: Enoyl-CoA hydratase/isomerase; 2,4-dienoyl-CoA reductase complement(5006030..5006929) Runella slithyformis DSM 19594 10872866 YP_004657791.1 CDS Runsl_4321 NC_015703.1 5007079 5007885 R PFAM: Enoyl-CoA hydratase/isomerase; COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277; KEGG: rca:Rcas_3473 cystathionine gamma-synthase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; PRIAM: Cystathionine gamma-lyase; SPTR: Cystathionine gamma-synthase; enoyl-CoA hydratase complement(5007079..5007885) Runella slithyformis DSM 19594 10872867 YP_004657792.1 CDS Runsl_4322 NC_015703.1 5008184 5009302 D PFAM: Cys/Met metabolism PLP-dependent enzyme; cystathionine gamma-lyase 5008184..5009302 Runella slithyformis DSM 19594 10872868 YP_004657793.1 CDS Runsl_4323 NC_015703.1 5009606 5010487 R PFAM: CHC2 zinc finger; DNA primase complement(5009606..5010487) Runella slithyformis DSM 19594 10872870 YP_004657794.1 CDS Runsl_4324 NC_015703.1 5010521 5010649 D KEGG: sli:Slin_0693 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5010521..5010649 Runella slithyformis DSM 19594 10872871 YP_004657795.1 CDS Runsl_4325 NC_015703.1 5010859 5012046 R hypothetical protein complement(5010859..5012046) Runella slithyformis DSM 19594 10872872 YP_004657796.1 CDS Runsl_4326 NC_015703.1 5012151 5012345 R KEGG: zpr:ZPR_2780 transposase; SPTR: Phage integrase; hypothetical protein complement(5012151..5012345) Runella slithyformis DSM 19594 10872873 YP_004657797.1 CDS Runsl_4327 NC_015703.1 5012356 5013618 R COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: mtt:Ftrac_1206 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Phage integrase; hypothetical protein complement(5012356..5013618) Runella slithyformis DSM 19594 10872874 YP_004657798.1 CDS Runsl_4328 NC_015703.1 5013615 5014883 R PFAM: Phage integrase; integrase complement(5013615..5014883) Runella slithyformis DSM 19594 10872875 YP_004657799.1 CDS Runsl_4329 NC_015703.1 5014975 5015241 R InterPro IPR001387; KEGG: nla:NLA_19700 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix domain protein; hypothetical protein complement(5014975..5015241) Runella slithyformis DSM 19594 10872876 YP_004657800.1 CDS Runsl_4330 NC_015703.1 5015338 5015847 D PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein 5015338..5015847 Runella slithyformis DSM 19594 10872877 YP_004657801.1 CDS Runsl_4331 NC_015703.1 5017173 5017547 R hypothetical protein complement(5017173..5017547) Runella slithyformis DSM 19594 10872878 YP_004657802.1 CDS Runsl_4332 NC_015703.1 5017629 5018204 R hypothetical protein complement(5017629..5018204) Runella slithyformis DSM 19594 10872879 YP_004657803.1 CDS Runsl_4333 NC_015703.1 5018415 5018582 R KEGG: dfe:Dfer_0539 integrase; SPTR: Integrase; hypothetical protein complement(5018415..5018582) Runella slithyformis DSM 19594 10872880 YP_004657804.1 CDS Runsl_4334 NC_015703.1 5018958 5019749 D Prodigal; manually curated; hypothetical protein 5018958..5019749 Runella slithyformis DSM 19594 10872881 YP_004657805.1 CDS Runsl_4337 NC_015703.1 5021802 5022008 D manually curated; hypothetical protein 5021802..5022008 Runella slithyformis DSM 19594 10872884 YP_004657806.1 CDS Runsl_4340 NC_015703.1 5023395 5024102 D KEGG: fsu:Fisuc_1557 hypothetical protein; SPTR: CRISPR-associated protein, TM1811 family; hypothetical protein 5023395..5024102 Runella slithyformis DSM 19594 10872887 YP_004657807.1 CDS Runsl_4341 NC_015703.1 5024113 5025708 D InterPro IPR005537; KEGG: vvy:VVA1540 hypothetical protein; PFAM: Protein of unknown function DUF324; SPTR: CRISPR-associated RAMP protein; hypothetical protein 5024113..5025708 Runella slithyformis DSM 19594 10872888 YP_004657808.1 CDS Runsl_4342 NC_015703.1 5025712 5026290 D PFAM: RAMP superfamily; Prodigal; manually curated; hypothetical protein 5025712..5026290 Runella slithyformis DSM 19594 10872889 YP_004657809.1 CDS Runsl_4344 NC_015703.1 5027479 5028490 R PFAM: Rhodopirellula transposase; 'Paired box' domain; Prodigal; manually curated; transposase complement(join(5027479..5027901,5027903..5028490)) Runella slithyformis DSM 19594 10872891 YP_004657810.1 CDS Runsl_4346 NC_015703.1 5029137 5030201 D PFAM: CRISPR-associated protein (cas_TM1812); TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated DxTHG motif protein; InterPro IPR002559; KEGG: app:CAP2UW1_1881 transposase IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase IS4 family protein; CRISPR-associated protein 5029137..5030201 Runella slithyformis DSM 19594 10872893 YP_004657811.1 CDS Runsl_4347 NC_015703.1 5030182 5031198 R PFAM: Transposase DDE domain; transposase IS4 family protein complement(5030182..5031198) Runella slithyformis DSM 19594 10872894 YP_004657812.1 CDS Runsl_4348 NC_015703.1 5031348 5031551 R hypothetical protein complement(5031348..5031551) Runella slithyformis DSM 19594 10872895 YP_004657813.1 CDS Runsl_4349 NC_015703.1 5031699 5031953 R InterPro IPR000601; KEGG: cpi:Cpin_6914 PKD domain containing protein; PFAM: PKD; SPTR: PKD domain containing protein; hypothetical protein complement(5031699..5031953) Runella slithyformis DSM 19594 10872896 YP_004657814.1 CDS Runsl_4350 NC_015703.1 5031916 5033052 R PFAM: PKD domain; manually curated; PKD domain-containing protein complement(5031916..5033052) Runella slithyformis DSM 19594 10872897 YP_004657815.1 CDS Runsl_4352 NC_015703.1 5033816 5035054 R PFAM: Uncharacterised protein family (UPF0236); InterPro IPR005151; KEGG: ppn:Palpr_0648 peptidase S41; PFAM: Peptidase S41; SPTR: uncharacterized protein; hypothetical protein complement(5033816..5035054) Runella slithyformis DSM 19594 10872899 YP_004657816.1 CDS Runsl_4353 NC_015703.1 5035408 5036757 R PFAM: Peptidase S41; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR001375; KEGG: sli:Slin_0636 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S41 complement(5035408..5036757) Runella slithyformis DSM 19594 10872900 YP_004657817.1 CDS Runsl_4354 NC_015703.1 5037143 5039629 R PFAM: Prolyl oligopeptidase; KEGG: sur:STAUR_3803 hypothetical protein; SPTR: Conserved uncharacterized protein; peptidase S9 prolyl oligopeptidase active site domain-containing protein complement(5037143..5039629) Runella slithyformis DSM 19594 10872901 YP_004657818.1 CDS Runsl_4355 NC_015703.1 5039671 5040114 R PFAM: Protein of unknown function (DUF2721); InterPro IPR000086; KEGG: dfe:Dfer_1953 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; hypothetical protein complement(5039671..5040114) Runella slithyformis DSM 19594 10872902 YP_004657819.1 CDS Runsl_4356 NC_015703.1 5040228 5040899 D PFAM: NUDIX domain; KEGG: dfe:Dfer_4518 hypothetical protein; SPTR: uncharacterized protein; NUDIX hydrolase 5040228..5040899 Runella slithyformis DSM 19594 10872903 YP_004657820.1 CDS Runsl_4357 NC_015703.1 5040991 5041515 D PFAM: HTH domain; COGs: COG2195 Di- and tripeptidase; InterPro IPR002933:IPR011650:IPR010161; KEGG: sli:Slin_2425 peptidase T; PFAM: Peptidase M20, dimerisation; Peptidase M20; PRIAM: Tripeptide aminopeptidase; SPTR: Peptidase T; TIGRFAM: Peptidase M20B, tripeptide aminopeptidase; hypothetical protein 5040991..5041515 Runella slithyformis DSM 19594 10872904 YP_004657821.1 CDS Runsl_4358 NC_015703.1 5041662 5042909 D PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: peptidase T; InterPro IPR012910; KEGG: sli:Slin_3208 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; peptidase T 5041662..5042909 Runella slithyformis DSM 19594 10872905 YP_004657822.1 CDS Runsl_4359 NC_015703.1 5043088 5045550 D PFAM: TonB-dependent Receptor Plug Domain; MG2 domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; KEGG: fbc:FB2170_06930 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 5043088..5045550 Runella slithyformis DSM 19594 10872906 YP_004657823.1 CDS Runsl_4360 NC_015703.1 5045566 5046531 R PFAM: Phytanoyl-CoA dioxygenase (PhyH); COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: fbc:FB2170_06925 transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator; hypothetical protein complement(5045566..5046531) Runella slithyformis DSM 19594 10872907 YP_004657824.1 CDS Runsl_4361 NC_015703.1 5046693 5047613 D PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR011579; KEGG: fba:FIC_01835 ATPase; SPTR: ATPase; AraC family transcriptional regulator 5046693..5047613 Runella slithyformis DSM 19594 10872908 YP_004657825.1 CDS Runsl_4362 NC_015703.1 5047738 5049162 D PFAM: Archaeal ATPase; manually curated; ATPase 5047738..5049162 Runella slithyformis DSM 19594 10872909 YP_004657826.1 CDS Runsl_4364 NC_015703.1 5049296 5050189 R Prodigal; manually curated; hypothetical protein complement(5049296..5050189) Runella slithyformis DSM 19594 10872911 YP_004657827.1 CDS Runsl_4366 NC_015703.1 5051348 5052364 D PFAM: Transposase DDE domain; COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR001264:IPR001460; KEGG: dfe:Dfer_4764 glycosyl transferase 51; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Glycosyl transferase 51; transposase IS4 family protein 5051348..5052364 Runella slithyformis DSM 19594 10872913 YP_004657828.1 CDS Runsl_4367 NC_015703.1 5052503 5055103 R PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931:IPR013589; KEGG: dfe:Dfer_3510 transglutaminase domain protein; PFAM: Transglutaminase-like; Bacterial transglutaminase-like, N-terminal; SMART: Transglutaminase-like; SPTR: Transglutaminase domain protein; peptidoglycan glycosyltransferase complement(5052503..5055103) Runella slithyformis DSM 19594 10872914 YP_004657829.1 CDS Runsl_4368 NC_015703.1 5055322 5056200 R PFAM: Transglutaminase-like superfamily; Bacterial transglutaminase-like N-terminal region; COGs: COG2308 conserved hypothetical protein; InterPro IPR007297:IPR007302:IPR007296; KEGG: dfe:Dfer_3511 protein of unknown function DUF404; PFAM: Protein of unknown function DUF404, bacteria N-terminal; Protein of unknown function DUF407; Protein of unknown function DUF403, bacteria; SPTR: uncharacterized protein; transglutaminase domain-containing protein complement(5055322..5056200) Runella slithyformis DSM 19594 10872915 YP_004657830.1 CDS Runsl_4369 NC_015703.1 5056190 5058757 R PFAM: Bacterial domain of unknown function (DUF403); Domain of unknown function (DUF407); Domain of unknown function (DUF404); COGs: COG4196 conserved hypothetical protein; InterPro IPR002931:IPR013589:IPR018667; KEGG: dfe:Dfer_3512 transglutaminase domain protein; PFAM: Protein of unknown function DUF2126; Bacterial transglutaminase-like, N-terminal; Transglutaminase-like; SMART: Transglutaminase-like; SPTR: Transglutaminase domain protein; hypothetical protein complement(5056190..5058757) Runella slithyformis DSM 19594 10872916 YP_004657831.1 CDS Runsl_4370 NC_015703.1 5058807 5062232 R PFAM: Transglutaminase-like superfamily; Bacterial transglutaminase-like N-terminal region; amidoligase enzyme (DUF2126); KEGG: dfe:Dfer_1486 glycoside hydrolase 30; SPTR: xylanase; hypothetical protein complement(5058807..5062232) Runella slithyformis DSM 19594 10872917 YP_004657832.1 CDS Runsl_4371 NC_015703.1 5062794 5064308 D glycoside hydrolase 5062794..5064308 Runella slithyformis DSM 19594 10872918 YP_004657833.1 CDS Runsl_4372 NC_015703.1 5064506 5065243 D hypothetical protein 5064506..5065243 Runella slithyformis DSM 19594 10872919 YP_004657834.1 CDS Runsl_4373 NC_015703.1 5065293 5066066 D KEGG: dfe:Dfer_4891 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5065293..5066066 Runella slithyformis DSM 19594 10872920 YP_004657835.1 CDS Runsl_4374 NC_015703.1 5066175 5066681 D PFAM: Protein of unknown function (DUF2911); COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sli:Slin_5789 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; hypothetical protein 5066175..5066681 Runella slithyformis DSM 19594 10872921 YP_004657836.1 CDS Runsl_4375 NC_015703.1 5066947 5067882 D PFAM: Xylose isomerase-like TIM barrel; InterPro IPR011445:IPR011933; KEGG: dfe:Dfer_5768 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Double-transmembrane region, N-terminal; xylose isomerase domain-containing protein 5066947..5067882 Runella slithyformis DSM 19594 10872922 YP_004657837.1 CDS Runsl_4376 NC_015703.1 5068197 5070254 D PFAM: Aerotolerance regulator N-terminal; CARDB; TIGRFAM: N-terminal double-transmembrane domain; COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: sli:Slin_6275 hypothetical protein; SPTR: uncharacterized protein; double-transmembrane region domain-containing protein 5068197..5070254 Runella slithyformis DSM 19594 10872923 YP_004657838.1 CDS Runsl_4377 NC_015703.1 5070338 5071183 D KEGG: aas:Aasi_1435 hypothetical protein; SPTR: ankyrin repeat protein; hypothetical protein 5070338..5071183 Runella slithyformis DSM 19594 10872924 YP_004657839.1 CDS Runsl_4378 NC_015703.1 5071247 5071699 R InterPro IPR012910; KEGG: cpi:Cpin_5200 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; hypothetical protein complement(5071247..5071699) Runella slithyformis DSM 19594 10872925 YP_004657840.1 CDS Runsl_4379 NC_015703.1 5071880 5074285 R PFAM: TonB-dependent Receptor Plug Domain; COGs: COG0579 dehydrogenase; InterPro IPR006231; KEGG: dfe:Dfer_4539 malate:quinone oxidoreductase; PFAM: Malate:quinone-oxidoreductase; PRIAM: Malate dehydrogenase (acceptor); SPTR: Probable malate:quinone oxidoreductase; TonB-dependent receptor plug complement(5071880..5074285) Runella slithyformis DSM 19594 10872926 YP_004657841.1 CDS Runsl_4380 NC_015703.1 5074449 5075564 R PFAM: Malate:quinone oxidoreductase (Mqo); TIGRFAM: malate:quinone-oxidoreductase; InterPro IPR019734:IPR001440:IPR013105; KEGG: azl:AZL_022990 hypothetical protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: uncharacterized protein; malate dehydrogenase complement(5074449..5075564) Runella slithyformis DSM 19594 10872927 YP_004657842.1 CDS Runsl_4381 NC_015703.1 5075701 5077824 R PFAM: Tetratricopeptide repeat; Dolichyl-phosphate-mannose-protein mannosyltransferase; InterPro IPR019734:IPR001440; KEGG: dfe:Dfer_5482 tetratricopeptide domain protein; PFAM: Tetratricopeptide TPR-1; SPTR: Tetratricopeptide domain protein; hypothetical protein complement(5075701..5077824) Runella slithyformis DSM 19594 10872928 YP_004657843.1 CDS Runsl_4382 NC_015703.1 5077910 5078644 D COGs: COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; HAMAP: Phosphoribosylaminoimidazole-succinocarboxamide synthase; InterPro IPR001636; KEGG: dfe:Dfer_5481 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; PRIAM: Phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: Phosphoribosylaminoimidazole-succinocarboxamide synthase; hypothetical protein 5077910..5078644 Runella slithyformis DSM 19594 10872929 YP_004657844.1 CDS Runsl_4383 NC_015703.1 5078691 5079638 D PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: dfe:Dfer_5480 sulfate transporter/antisigma-factor antagonist STAS; SPTR: Sulfate transporter/antisigma-factor antagonist STAS; phosphoribosylaminoimidazolesuccinocarboxamide synthase 5078691..5079638 Runella slithyformis DSM 19594 10872930 YP_004657845.1 CDS Runsl_4384 NC_015703.1 5079732 5080160 D PFAM: STAS domain; COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III; HAMAP: Ribonuclease Z; InterPro IPR013471; KEGG: sli:Slin_2672 beta-lactamase; SPTR: Ribonuclease Z; sulfate transporter/antisigma-factor antagonist STAS 5079732..5080160 Runella slithyformis DSM 19594 10872931 YP_004657846.1 CDS Runsl_4385 NC_015703.1 5080160 5081080 D PFAM: Metallo-beta-lactamase superfamily; TIGRFAM: ribonuclease Z; KEGG: dfe:Dfer_5010 hypothetical protein; SPTR: uncharacterized protein; ribonuclease Z 5080160..5081080 Runella slithyformis DSM 19594 10872932 YP_004657847.1 CDS Runsl_4386 NC_015703.1 5081168 5081761 R COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR013027:IPR006005; KEGG: dfe:Dfer_5478 glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Glutamate synthase (NADH); SPTR: Glutamate synthase, NADH/NADPH, small subunit; TIGRFAM: Glutamate synthase, NADH/NADPH, small subunit 1; hypothetical protein complement(5081168..5081761) Runella slithyformis DSM 19594 10872933 YP_004657848.1 CDS Runsl_4387 NC_015703.1 5081989 5083524 R PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit; COGs: COG0069 Glutamate synthase domain 2; InterPro IPR000583:IPR006982:IPR002932:IPR002489; KEGG: dfe:Dfer_5479 glutamate synthase (ferredoxin); PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal; PRIAM: Glutamate synthase (ferredoxin); SPTR: Glutamate synthase (Ferredoxin); glutamate synthase NADH/NADPH small subunit complement(5081989..5083524) Runella slithyformis DSM 19594 10872934 YP_004657849.1 CDS Runsl_4388 NC_015703.1 5083695 5088275 R PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sli:Slin_3261 beta-lactamase; PRIAM: Beta-lactamase; SPTR: Beta-lactamase; glutamate synthase complement(5083695..5088275) Runella slithyformis DSM 19594 10872935 YP_004657850.1 CDS Runsl_4389 NC_015703.1 5088602 5089327 R PFAM: Metallo-beta-lactamase superfamily; COGs: COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain; HAMAP: Phosphoribosylformylglycinamidine synthase 2; InterPro IPR000728:IPR010918:IPR010074; KEGG: sli:Slin_2274 phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: Phosphoribosylformylglycinamidine synthase 2; TIGRFAM: Phosphoribosylformylglycinamidine synthase II; beta-lactamase complement(5088602..5089327) Runella slithyformis DSM 19594 10872936 YP_004657851.1 CDS Runsl_4390 NC_015703.1 5089492 5091759 D PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase II; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR003593:IPR005074:IPR001140:IPR003439; KEGG: shg:Sph21_0591 xenobiotic-transporting ATPase; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Bacteriocin ABC transporter, ATP-binding/permease; phosphoribosylformylglycinamidine synthase 2 5089492..5091759 Runella slithyformis DSM 19594 10872937 YP_004657852.1 CDS Runsl_4391 NC_015703.1 5091835 5094093 R PFAM: ABC transporter transmembrane region; Peptidase C39 family; ABC transporter; InterPro IPR013740; KEGG: dfe:Dfer_1269 hypothetical protein; PFAM: Redoxin; SPTR: uncharacterized protein; xenobiotic-transporting ATPase complement(5091835..5094093) Runella slithyformis DSM 19594 10872938 YP_004657853.1 CDS Runsl_4392 NC_015703.1 5094170 5094688 R PFAM: AhpC/TSA family; KEGG: shg:Sph21_0589 hypothetical protein; SPTR: uncharacterized protein; redoxin domain-containing protein complement(5094170..5094688) Runella slithyformis DSM 19594 10872939 YP_004657854.1 CDS Runsl_4393 NC_015703.1 5094694 5095323 R hypothetical protein complement(5094694..5095323) Runella slithyformis DSM 19594 10872940 YP_004657855.1 CDS Runsl_4394 NC_015703.1 5095555 5095749 R InterPro IPR001387; KEGG: chu:CHU_0810 transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: uncharacterized protein; hypothetical protein complement(5095555..5095749) Runella slithyformis DSM 19594 10872941 YP_004657856.1 CDS Runsl_4395 NC_015703.1 5096538 5096759 D PFAM: Helix-turn-helix; KEGG: sli:Slin_3425 hypothetical protein; SPTR: uncharacterized protein; helix-turn-helix domain-containing protein 5096538..5096759 Runella slithyformis DSM 19594 10872942 YP_004657857.1 CDS Runsl_4396 NC_015703.1 5096935 5097549 D COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056; KEGG: chu:CHU_1605 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: Ribulose-phosphate 3-epimerase; TIGRFAM: Ribulose-phosphate 3-epimerase; hypothetical protein 5096935..5097549 Runella slithyformis DSM 19594 10872943 YP_004657858.1 CDS Runsl_4397 NC_015703.1 5097591 5098247 R PFAM: Ribulose-phosphate 3 epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; InterPro IPR018060:IPR000005:IPR014048; KEGG: amr:AM1_4991 methylated DNA-protein cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; ribulose-phosphate 3-epimerase complement(5097591..5098247) Runella slithyformis DSM 19594 10872944 YP_004657859.1 CDS Runsl_4398 NC_015703.1 5098311 5099162 R PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; TIGRFAM: O-6-methylguanine DNA methyltransferase; AraC family transcriptional regulator complement(5098311..5099162) Runella slithyformis DSM 19594 10872945 YP_004657860.1 CDS Runsl_4399 NC_015703.1 5099249 5099653 R InterPro IPR000086; KEGG: dfe:Dfer_5005 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; hypothetical protein complement(5099249..5099653) Runella slithyformis DSM 19594 10872946 YP_004657861.1 CDS Runsl_4400 NC_015703.1 5099719 5100273 R PFAM: NUDIX domain; KEGG: sli:Slin_1645 hypothetical protein; SPTR: uncharacterized protein; NUDIX hydrolase complement(5099719..5100273) Runella slithyformis DSM 19594 10872947 YP_004657862.1 CDS Runsl_4401 NC_015703.1 5100388 5101266 D PFAM: Protein of unknown function (DUF2911); COGs: COG1259 conserved hypothetical protein; InterPro IPR003729:IPR001943; KEGG: dfe:Dfer_1242 protein of unknown function DUF151; PFAM: Protein of unknown function DUF151; UvrB/UvrC protein; SPTR: uncharacterized protein; hypothetical protein 5100388..5101266 Runella slithyformis DSM 19594 10872948 YP_004657863.1 CDS Runsl_4402 NC_015703.1 5101345 5101941 R PFAM: Uncharacterised ACR, COG1259; UvrB/uvrC motif; hypothetical protein complement(5101345..5101941) Runella slithyformis DSM 19594 10872949 YP_004657864.1 CDS Runsl_4403 NC_015703.1 5102047 5102184 D COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR014730:IPR014731; KEGG: dfe:Dfer_1241 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SPTR: Electron transfer flavoprotein alpha subunit; hypothetical protein 5102047..5102184 Runella slithyformis DSM 19594 10872950 YP_004657865.1 CDS Runsl_4404 NC_015703.1 5102146 5103108 R PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain; COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR014730; KEGG: dfe:Dfer_1240 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SPTR: Electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein subunit alpha complement(5102146..5103108) Runella slithyformis DSM 19594 10872951 YP_004657866.1 CDS Runsl_4405 NC_015703.1 5103232 5103969 R PFAM: Electron transfer flavoprotein domain; KEGG: dfe:Dfer_1239 hypothetical protein; SPTR: uncharacterized protein; electron transfer flavoprotein alpha/beta-subunit complement(5103232..5103969) Runella slithyformis DSM 19594 10872952 YP_004657867.1 CDS Runsl_4406 NC_015703.1 5104075 5104401 D COGs: COG0621 2-methylthioadenine synthetase; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; InterProIPR006638:IPR013848:IPR007197:IPR002792:IPR 005839:IPR006463; KEGG: dfe:Dfer_2727 (dimethylallyl)adenosine tRNA methylthiotransferase; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: RNA modification enzyme, MiaB family; TIGRFAM: Methylthiotransferase; tRNA-i(6)A37 modification enzyme MiaB; hypothetical protein 5104075..5104401 Runella slithyformis DSM 19594 10872953 YP_004657868.1 CDS Runsl_4407 NC_015703.1 5104593 5106050 D PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; radical SAM methylthiotransferase, MiaB/RimO family; COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains; InterPro IPR003593:IPR002078:IPR002197; KEGG: sli:Slin_0990 fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; SPTR: Sigma54 specific transcriptional regulator, Fis family; (dimethylallyl)adenosine tRNA methylthiotransferase 5104593..5106050 Runella slithyformis DSM 19594 10872954 YP_004657869.1 CDS Runsl_4408 NC_015703.1 5106190 5107527 D PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; KEGG: sli:Slin_0989 hypothetical protein; SPTR: uncharacterized protein; Fis family transcriptional regulator 5106190..5107527 Runella slithyformis DSM 19594 10872955 YP_004657870.1 CDS Runsl_4409 NC_015703.1 5107508 5108056 D KEGG: sli:Slin_0988 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5107508..5108056 Runella slithyformis DSM 19594 10872956 YP_004657871.1 CDS Runsl_4410 NC_015703.1 5108171 5108989 D InterPro IPR004692; KEGG: dfe:Dfer_2731 preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; SPTR: Preprotein translocase, SecG subunit; TIGRFAM: Preprotein translocase SecG subunit; hypothetical protein 5108171..5108989 Runella slithyformis DSM 19594 10872957 YP_004657872.1 CDS Runsl_4411 NC_015703.1 5109147 5109515 D PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit; preprotein translocase subunit SecG 5109147..5109515 Runella slithyformis DSM 19594 10872958 YP_004657873.1 CDS Runsl_4412 NC_015703.1 5110074 5110175 R KEGG: mea:Mex_2p0338 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5110074..5110175) Runella slithyformis DSM 19594 10872959 YP_004657874.1 CDS Runsl_4413 NC_015703.1 5110230 5110712 D PFAM: DNA N-6-adenine-methyltransferase (Dam); hypothetical protein 5110230..5110712 Runella slithyformis DSM 19594 10872960 YP_004657875.1 CDS Runsl_4414 NC_015703.1 5110707 5110910 R InterPro IPR010324; KEGG: mct:MCR_0519 type II restriction endonuclease DpnI; PFAM: Dam-replacing; PRIAM: Type II site-specific deoxyribonuclease; SPTR: type II restriction endonuclease DpnI; hypothetical protein complement(5110707..5110910) Runella slithyformis DSM 19594 10872961 YP_004657876.1 CDS Runsl_4415 NC_015703.1 5110939 5111718 R PFAM: Dam-replacing family; COGs: COG5646 conserved hypothetical protein; InterPro IPR014922; KEGG: rci:RCIX1712 hypothetical protein; PFAM: Protein of unknown function DUF1801; SPTR: uncharacterized protein; type II site-specific deoxyribonuclease complement(5110939..5111718) Runella slithyformis DSM 19594 10872962 YP_004657877.1 CDS Runsl_4416 NC_015703.1 5111834 5112208 R PFAM: Domain of unknown function (DU1801); COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR003661:IPR003594; KEGG: sli:Slin_1994 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase; hypothetical protein complement(5111834..5112208) Runella slithyformis DSM 19594 10872963 YP_004657878.1 CDS Runsl_4417 NC_015703.1 5112305 5113414 R PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; InterPro IPR013148; KEGG: fjo:Fjoh_3966 glycosyl hydrolase 32 protein; PFAM: Glycosyl hydrolases family 32, N-terminal; SPTR: Glycoside hydrolase-like protein; integral membrane sensor signal transduction histidine kinase complement(5112305..5113414) Runella slithyformis DSM 19594 10872964 YP_004657879.1 CDS Runsl_4418 NC_015703.1 5113487 5114962 R PFAM: Glycosyl hydrolases family 32 N-terminal domain; COGs: COG0438 Glycosyltransferase; InterPro IPR001296:IPR006380:IPR012821; KEGG: lby:Lbys_0264 sucrose-phosphate synthase., sucrose-phosphate phosphatase; PFAM: Sucrose-6F-phosphate phosphohydrolase, plant/cyanobacteria; Glycosyl transferase, group 1; PRIAM: Sucrose-phosphate synthase., Sucrose-phosphate phosphatase; SPTR: Sucrose-phosphate synthase., Sucrose-phosphate phosphatase; TIGRFAM: Sucrose phosphate synthase, sucrose phosphatase-like region; glycosyl hydrolase 32 domain-containing protein complement(5113487..5114962) Runella slithyformis DSM 19594 10872965 YP_004657880.1 CDS Runsl_4419 NC_015703.1 5115082 5117253 D PFAM: Sucrose synthase; Glycosyl transferases group 1; Sucrose-6F-phosphate phosphohydrolase; TIGRFAM: sucrose-6F-phosphate phosphohydrolase; sucrose-phosphate synthase, , glycosyltransferase domain; sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial; manually curated; sucrose phosphate synthase sucrose phosphatase-like domain-containing protein 5115082..5117253 Runella slithyformis DSM 19594 10872966 YP_004657881.1 CDS Runsl_4421 NC_015703.1 5117603 5118748 R PFAM: Na+/H+ antiporter 1; TIGRFAM: Na+/H+ antiporter NhaA; KEGG: chu:CHU_0224 hypothetical protein; SPTR: uncharacterized protein; Na(+)/H(+) antiporter NhaA complement(5117603..5118748) Runella slithyformis DSM 19594 10872968 YP_004657882.1 CDS Runsl_4422 NC_015703.1 5118971 5119684 R KEGG: chu:CHU_0225 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5118971..5119684) Runella slithyformis DSM 19594 10872969 YP_004657883.1 CDS Runsl_4423 NC_015703.1 5119693 5120175 R COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: chu:CHU_0226 cyclic nucleotide binding regulatory protein; PFAM: Cyclic nucleotide-binding; SPTR: Cyclic nucleotide binding regulatory protein; hypothetical protein complement(5119693..5120175) Runella slithyformis DSM 19594 10872970 YP_004657884.1 CDS Runsl_4424 NC_015703.1 5120255 5120818 R PFAM: Cyclic nucleotide-binding domain; KEGG: rca:Rcas_0119 hypothetical protein; SPTR: uncharacterized protein; Crp/Fnr family transcriptional regulator complement(5120255..5120818) Runella slithyformis DSM 19594 10872971 YP_004657885.1 CDS Runsl_4425 NC_015703.1 5120827 5121513 R COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; InterPro IPR003782; KEGG: sli:Slin_5146 electron transporter SCO1/SenC; PFAM: Copper chaperone SCO1/SenC; SPTR: Electron transport protein SCO1/SenC; hypothetical protein complement(5120827..5121513) Runella slithyformis DSM 19594 10872972 YP_004657886.1 CDS Runsl_4426 NC_015703.1 5121638 5122312 R PFAM: SCO1/SenC; COGs: COG2849 conserved hypothetical protein; KEGG: sli:Slin_5145 hypothetical protein; SPTR: MORN variant repeat protein; electron transport protein SCO1/SenC complement(5121638..5122312) Runella slithyformis DSM 19594 10872973 YP_004657887.1 CDS Runsl_4427 NC_015703.1 5122251 5122745 R PFAM: MORN repeat variant; KEGG: sli:Slin_5144 hypothetical protein; SPTR: Conserved hypothetical lipoprotein; hypothetical protein complement(5122251..5122745) Runella slithyformis DSM 19594 10872974 YP_004657888.1 CDS Runsl_4428 NC_015703.1 5122821 5123579 R KEGG: dfe:Dfer_1267 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5122821..5123579) Runella slithyformis DSM 19594 10872975 YP_004657889.1 CDS Runsl_4429 NC_015703.1 5123844 5124212 R COGs: COG3832 conserved hypothetical protein; InterPro IPR013538; KEGG: chu:CHU_1110 hypothetical protein; PFAM: Activator of Hsp90 ATPase homologue 1-like; SPTR: uncharacterized protein; hypothetical protein complement(5123844..5124212) Runella slithyformis DSM 19594 10872976 YP_004657890.1 CDS Runsl_4430 NC_015703.1 5124261 5124764 R PFAM: Activator of Hsp90 ATPase homolog 1-like protein; manually curated; Activator of Hsp90 ATPase 1 family protein complement(5124261..5124764) Runella slithyformis DSM 19594 10872977 YP_004657891.1 CDS Runsl_4432 NC_015703.1 5125026 5125409 R KEGG: chu:CHU_3597 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5125026..5125409) Runella slithyformis DSM 19594 10872979 YP_004657892.1 CDS Runsl_4433 NC_015703.1 5125427 5125786 R KEGG: sal:Sala_2944 DoxX; SPTR: DoxX; hypothetical protein complement(5125427..5125786) Runella slithyformis DSM 19594 10872980 YP_004657893.1 CDS Runsl_4434 NC_015703.1 5125793 5125951 R hypothetical protein complement(5125793..5125951) Runella slithyformis DSM 19594 10872981 YP_004657894.1 CDS Runsl_4435 NC_015703.1 5125945 5126166 R Prodigal; manually curated; hypothetical protein complement(5125945..5126166) Runella slithyformis DSM 19594 10872982 YP_004657895.1 CDS Runsl_4437 NC_015703.1 5128064 5130892 R PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit; KEGG: dfe:Dfer_0195 hypothetical protein; SPTR: uncharacterized protein; carbamoyl-phosphate synthase large subunit complement(5128064..5130892) Runella slithyformis DSM 19594 10872984 YP_004657896.1 CDS Runsl_4438 NC_015703.1 5131207 5132217 D KEGG: dfe:Dfer_0194 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5131207..5132217 Runella slithyformis DSM 19594 10872985 YP_004657897.1 CDS Runsl_4439 NC_015703.1 5132287 5133447 D manually curated; hypothetical protein 5132287..5133447 Runella slithyformis DSM 19594 10872986 YP_004657898.1 CDS Runsl_4441 NC_015703.1 5133801 5135933 D PFAM: Uncharacterised BCR, COG1649; COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: fjo:Fjoh_1286 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; hypothetical protein 5133801..5135933 Runella slithyformis DSM 19594 10872988 YP_004657899.1 CDS Runsl_4442 NC_015703.1 5136276 5137226 D PFAM: Carbon-nitrogen hydrolase; COGs: COG0314 Molybdopterin converting factor large subunit; InterPro IPR003448; KEGG: cpi:Cpin_0207 molybdopterin biosynthesis MoaE protein; PFAM: Molybdopterin biosynthesis MoaE; SPTR: MoaE protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 5136276..5137226 Runella slithyformis DSM 19594 10872989 YP_004657900.1 CDS Runsl_4443 NC_015703.1 5137472 5137888 R PFAM: MoaE protein; COGs: COG1408 phosphohydrolase; InterPro IPR004843; KEGG: dfe:Dfer_4076 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; molybdopterin biosynthesis protein MoaE complement(5137472..5137888) Runella slithyformis DSM 19594 10872990 YP_004657901.1 CDS Runsl_4444 NC_015703.1 5138028 5139296 D PFAM: Calcineurin-like phosphoesterase; COGs: COG2388 acetyltransferase; KEGG: dmr:Deima_0861 acetyltransferase; SPTR: Acetyltransferase; metallophosphoesterase 5138028..5139296 Runella slithyformis DSM 19594 10872991 YP_004657902.1 CDS Runsl_4445 NC_015703.1 5139323 5139595 D acetyltransferase 5139323..5139595 Runella slithyformis DSM 19594 10872992 YP_004657903.1 CDS Runsl_4446 NC_015703.1 5139605 5139709 D COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094:IPR004113; KEGG: azo:azo3432 D-lactate dehydrogenase; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; PRIAM: D-lactate dehydrogenase (cytochrome); SPTR: Probable D-lactate dehydrogenase; hypothetical protein 5139605..5139709 Runella slithyformis DSM 19594 10872993 YP_004657904.1 CDS Runsl_4447 NC_015703.1 5139706 5141079 D PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; TIGRFAM: glycolate oxidase, subunit GlcD; SPTR: Transposase IS4 family protein; D-lactate dehydrogenase 5139706..5141079 Runella slithyformis DSM 19594 10872994 YP_004657905.1 CDS Runsl_4448 NC_015703.1 5141286 5142632 D COGs: COG1764 redox protein regulator of disulfide bond formation; InterPro IPR003718:IPR019904; KEGG: chu:CHU_2252 osmotically inducible protein; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: Osmotically inducible protein; TIGRFAM: Peroxiredoxin, osmotically inducible protein C, subgroup; hypothetical protein 5141286..5142632 Runella slithyformis DSM 19594 10872995 YP_004657906.1 CDS Runsl_4449 NC_015703.1 5142664 5143107 R PFAM: OsmC-like protein; TIGRFAM: peroxiredoxin, OsmC subfamily; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: phe:Phep_3453 major facilitator superfamily protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; OsmC subfamily peroxiredoxin complement(5142664..5143107) Runella slithyformis DSM 19594 10872996 YP_004657907.1 CDS Runsl_4450 NC_015703.1 5143250 5144596 R PFAM: Major Facilitator Superfamily; KEGG: phe:Phep_3454 hypothetical protein; SPTR: uncharacterized protein; major facilitator superfamily protein complement(5143250..5144596) Runella slithyformis DSM 19594 10872997 YP_004657908.1 CDS Runsl_4451 NC_015703.1 5144707 5144922 R InterPro IPR001647; KEGG: phe:Phep_3455 regulatory protein TetR; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; hypothetical protein complement(5144707..5144922) Runella slithyformis DSM 19594 10872998 YP_004657909.1 CDS Runsl_4452 NC_015703.1 5144993 5145583 R PFAM: Bacterial regulatory proteins, tetR family; TetR family transcriptional regulator complement(5144993..5145583) Runella slithyformis DSM 19594 10872999 YP_004657910.1 CDS Runsl_4453 NC_015703.1 5145652 5145768 D KEGG: dfe:Dfer_3342 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5145652..5145768 Runella slithyformis DSM 19594 10873000 YP_004657911.1 CDS Runsl_4454 NC_015703.1 5145815 5146414 R PFAM: Acetyltransferase (GNAT) family; KEGG: dfe:Dfer_3341 protein of unknown function DUF1486; SPTR: uncharacterized protein; hypothetical protein complement(5145815..5146414) Runella slithyformis DSM 19594 10873001 YP_004657912.1 CDS Runsl_4455 NC_015703.1 5146475 5146876 R PFAM: SnoaL-like polyketide cyclase; TIGRFAM: conserved hypothetical protein, steroid delta-isomerase-related; COGs: COG2367 Beta-lactamase class A; InterPro IPR001466; KEGG: aby:ABAYE3623 beta-lactamase VEB-1; PFAM: Beta-lactamase-related; PRIAM: Beta-lactamase; SPTR: Beta-lactamase; hypothetical protein complement(5146475..5146876) Runella slithyformis DSM 19594 10873002 YP_004657913.1 CDS Runsl_4456 NC_015703.1 5147053 5147949 R PFAM: Beta-lactamase; COGs: COG1231 Monoamine oxidase; InterPro IPR002937; KEGG: rpf:Rpic12D_4699 amine oxidase; PFAM: Amine oxidase; PRIAM: Polyamine oxidase; SPTR: Amine oxidase; beta-lactamase complement(5147053..5147949) Runella slithyformis DSM 19594 10873003 YP_004657914.1 CDS Runsl_4457 NC_015703.1 5148032 5149393 R PFAM: Flavin containing amine oxidoreductase; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: cpc:Cpar_0956 NmrA family protein; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NmrA family protein; polyamine oxidase complement(5148032..5149393) Runella slithyformis DSM 19594 10873004 YP_004657915.1 CDS Runsl_4458 NC_015703.1 5149456 5150334 R PFAM: NmrA-like family; KEGG: sli:Slin_3048 rifampin ADP-ribosyl transferase; SPTR: Rifampin ADP-ribosyl transferase; NAD-dependent epimerase/dehydratase complement(5149456..5150334) Runella slithyformis DSM 19594 10873005 YP_004657916.1 CDS Runsl_4459 NC_015703.1 5150381 5150830 R PFAM: DNA/RNA tunnel of bacterial DNA dependent RNA polymerase; COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014001:IPR007409:IPR006935; KEGG: chu:CHU_2936 restriction enzyme type I helicase subunit; type I restriction enzyme HsdR; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; SPTR: Restriction enzyme type I helicase subunit; type I restriction enzyme HsdR; rifampin ADP-ribosyl transferase complement(5150381..5150830) Runella slithyformis DSM 19594 10873006 YP_004657917.1 CDS Runsl_4460 NC_015703.1 5151124 5154162 R PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: sli:Slin_6960 transcriptional regulator, ArsR family; SMART: ATPase, AAA+ type, core; SPTR: Transcriptional regulator, ArsR family; Restriction endonuclease, type I, EcoRI, R subunit/type III complement(5151124..5154162) Runella slithyformis DSM 19594 10873007 YP_004657918.1 CDS Runsl_4461 NC_015703.1 5154314 5155489 D COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: mmq:MmarC5_0640 restriction modification system DNA specificity subunit; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Restriction modification system DNA specificity domain; ATPase AAA 5154314..5155489 Runella slithyformis DSM 19594 10873008 YP_004657919.1 CDS Runsl_4462 NC_015703.1 5155663 5157024 R PFAM: Type I restriction modification DNA specificity domain; restriction modification system DNA specificity domain-containing protein complement(5155663..5157024) Runella slithyformis DSM 19594 10873009 YP_004657920.1 CDS Runsl_4463 NC_015703.1 5157014 5157127 R Prodigal; manually curated; hypothetical protein complement(5157014..5157127) Runella slithyformis DSM 19594 10873010 YP_004657921.1 CDS Runsl_4466 NC_015703.1 5159862 5161514 R InterPro IPR010686; KEGG: dfe:Dfer_1678 protein of unknown function DUF1264; PFAM: Protein of unknown function DUF1264; SPTR: uncharacterized protein; hypothetical protein complement(5159862..5161514) Runella slithyformis DSM 19594 10873013 YP_004657922.1 CDS Runsl_4467 NC_015703.1 5161869 5162651 D PFAM: Protein of unknown function (DUF1264); COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: fba:FIC_01703 L-sorbosone dehydrogenase; SPTR: L-sorbosone dehydrogenase; hypothetical protein 5161869..5162651 Runella slithyformis DSM 19594 10873014 YP_004657923.1 CDS Runsl_4468 NC_015703.1 5162853 5164091 D PFAM: Glucose / Sorbosone dehydrogenase; InterPro IPR013658; KEGG: fba:FIC_01704 hypothetical protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; SPTR: uncharacterized protein; L-sorbosone dehydrogenase 5162853..5164091 Runella slithyformis DSM 19594 10873015 YP_004657924.1 CDS Runsl_4469 NC_015703.1 5164091 5165065 D PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: chu:CHU_2072 hypothetical protein; SPTR: uncharacterized protein; SMP-30/gluconolaconase/LRE-like region-containing protein 5164091..5165065 Runella slithyformis DSM 19594 10873016 YP_004657925.1 CDS Runsl_4470 NC_015703.1 5165102 5165572 D PFAM: Protein of unknown function (DUF2938); COGs: COG3546 Mn-containing catalase; InterPro IPR007760; KEGG: cpi:Cpin_5037 catalase; PFAM: Catalase, manganese; PRIAM: Catalase; SPTR: Catalase; hypothetical protein 5165102..5165572 Runella slithyformis DSM 19594 10873017 YP_004657926.1 CDS Runsl_4471 NC_015703.1 5165653 5166594 D PFAM: Manganese containing catalase; COGs: COG2761 dithiol-disulfide isomerase involved in polyketide biosynthesis; KEGG: dfe:Dfer_1561 DsbA oxidoreductase; SPTR: DSBA oxidoreductase; catalase 5165653..5166594 Runella slithyformis DSM 19594 10873018 YP_004657927.1 CDS Runsl_4472 NC_015703.1 5166805 5167593 D PFAM: DSBA-like thioredoxin domain; COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 013767:IPR013655:IPR013656; KEGG: sli:Slin_0618 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold-4; PAS fold-3; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; DsbA oxidoreductase 5166805..5167593 Runella slithyformis DSM 19594 10873019 YP_004657928.1 CDS Runsl_4473 NC_015703.1 5168165 5170918 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; KEGG: dfe:Dfer_5722 hypothetical protein; SPTR: uncharacterized protein; PAS/PAC sensor signal transduction histidine kinase 5168165..5170918 Runella slithyformis DSM 19594 10873020 YP_004657929.1 CDS Runsl_4474 NC_015703.1 5170969 5172096 R PFAM: Surface antigen; hypothetical protein complement(5170969..5172096) Runella slithyformis DSM 19594 10873021 YP_004657930.1 CDS Runsl_4475 NC_015703.1 5172152 5172334 D InterPro IPR006680; KEGG: sli:Slin_3381 amidohydrolase; PFAM: Amidohydrolase 1; SPTR: Amidohydrolase; hypothetical protein 5172152..5172334 Runella slithyformis DSM 19594 10873022 YP_004657931.1 CDS Runsl_4476 NC_015703.1 5172373 5173731 D PFAM: Amidohydrolase; InterPro IPR000923:IPR013428; KEGG: dfe:Dfer_5354 membrane-bound dehydrogenase domain protein; PFAM: Blue (type 1) copper domain; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; amidohydrolase 5172373..5173731 Runella slithyformis DSM 19594 10873023 YP_004657932.1 CDS Runsl_4477 NC_015703.1 5173812 5176664 R PFAM: Copper binding proteins, plastocyanin/azurin family; TIGRFAM: membrane-bound dehydrogenase domain; KEGG: chu:CHU_1125 hypothetical protein; SPTR: uncharacterized protein; membrane-bound dehydrogenase domain-containing protein complement(5173812..5176664) Runella slithyformis DSM 19594 10873024 YP_004657933.1 CDS Runsl_4478 NC_015703.1 5177009 5177344 D hypothetical protein 5177009..5177344 Runella slithyformis DSM 19594 10873025 YP_004657934.1 CDS Runsl_4479 NC_015703.1 5177374 5177520 D hypothetical protein 5177374..5177520 Runella slithyformis DSM 19594 10873026 YP_004657935.1 CDS Runsl_4480 NC_015703.1 5177631 5177756 D COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 013655:IPR013656; KEGG: sli:Slin_0618 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-4; PAS fold-3; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; hypothetical protein 5177631..5177756 Runella slithyformis DSM 19594 10873027 YP_004657936.1 CDS Runsl_4481 NC_015703.1 5178214 5180544 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; KEGG: dfe:Dfer_2156 hypothetical protein; SPTR: uncharacterized protein; PAS/PAC sensor signal transduction histidine kinase 5178214..5180544 Runella slithyformis DSM 19594 10873028 YP_004657937.1 CDS Runsl_4482 NC_015703.1 5180624 5180959 R manually curated; hypothetical protein complement(5180624..5180959) Runella slithyformis DSM 19594 10873029 YP_004657938.1 CDS Runsl_4484 NC_015703.1 5182059 5182421 D PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb); single-strand binding protein 5182059..5182421 Runella slithyformis DSM 19594 10873031 YP_004657939.1 CDS Runsl_4485 NC_015703.1 5182817 5183176 D COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: phe:Phep_0177 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; hypothetical protein 5182817..5183176 Runella slithyformis DSM 19594 10873032 YP_004657940.1 CDS Runsl_4486 NC_015703.1 5183553 5184503 D PFAM: alpha/beta hydrolase fold; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR001258; KEGG: cpi:Cpin_1469 NHL repeat containing protein; PFAM: NHL repeat; SPTR: NHL repeat containing protein; alpha/beta hydrolase 5183553..5184503 Runella slithyformis DSM 19594 10873033 YP_004657941.1 CDS Runsl_4487 NC_015703.1 5184669 5186012 D PFAM: Glucose / Sorbosone dehydrogenase; Membrane bound L-sorbosone dehydrogenase; COGs: COG1023 6-phosphogluconate dehydrogenase; InterPro IPR006115:IPR006114:IPR004849; KEGG: cbk:CLL_A1312 6-phosphogluconate dehydrogenase-like protein; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal; PRIAM: Phosphogluconate dehydrogenase (decarboxylating); SPTR: 6-phosphogluconate dehydrogenase (Decarboxylating); TIGRFAM: 6-phosphogluconate dehydrogenase related protein; NHL repeat containing protein 5184669..5186012 Runella slithyformis DSM 19594 10873034 YP_004657942.1 CDS Runsl_4488 NC_015703.1 5186128 5187033 R PFAM: 6-phosphogluconate dehydrogenase, C-terminal domain; NAD binding domain of 6-phosphogluconate dehydrogenase; TIGRFAM: 6-phosphogluconate dehydrogenase (decarboxylating); 6-phosphogluconate dehydrogenase, decarboxylating; KEGG: sli:Slin_4811 hypothetical protein; SPTR: uncharacterized protein; 6-phosphogluconate dehydrogenase complement(5186128..5187033) Runella slithyformis DSM 19594 10873035 YP_004657943.1 CDS Runsl_4489 NC_015703.1 5187142 5188665 R InterPro IPR012910:IPR000531; KEGG: sli:Slin_4810 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: outer membrane protein, probably involved in nutrient binding; hypothetical protein complement(5187142..5188665) Runella slithyformis DSM 19594 10873036 YP_004657944.1 CDS Runsl_4490 NC_015703.1 5188772 5191945 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: caa:Caka_0919 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; TonB-dependent receptor plug complement(5188772..5191945) Runella slithyformis DSM 19594 10873037 YP_004657945.1 CDS Runsl_4491 NC_015703.1 5192109 5192984 D PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: tbo:Thebr_0618 carbohydrate kinase, FGGY-like protein; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; PRIAM: Gluconokinase; SPTR: Carbohydrate kinase, FGGY-like protein; AraC family transcriptional regulator 5192109..5192984 Runella slithyformis DSM 19594 10873038 YP_004657946.1 CDS Runsl_4492 NC_015703.1 5193095 5194606 D PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: gluconate kinase, FGGY type; KEGG: geo:Geob_2464 beta-propeller repeat TECPR; SPTR: Beta-propeller repeat TECPR; gluconokinase 5193095..5194606 Runella slithyformis DSM 19594 10873039 YP_004657947.1 CDS Runsl_4493 NC_015703.1 5194711 5195256 D KEGG: dfe:Dfer_2950 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5194711..5195256 Runella slithyformis DSM 19594 10873040 YP_004657948.1 CDS Runsl_4494 NC_015703.1 5195258 5196364 R COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: sli:Slin_0019 peptidase M16 domain protein; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: Peptidase M16 domain protein; hypothetical protein complement(5195258..5196364) Runella slithyformis DSM 19594 10873041 YP_004657949.1 CDS Runsl_4495 NC_015703.1 5196561 5197799 D PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16); COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase; HAMAP: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; InterPro IPR003526; KEGG: dfe:Dfer_2948 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; SPTR: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; peptidase M16 domain-containing protein 5196561..5197799 Runella slithyformis DSM 19594 10873042 YP_004657950.1 CDS Runsl_4496 NC_015703.1 5197871 5198350 D PFAM: YgbB family; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; COGs: COG2159 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: dfe:Dfer_2949 amidohydrolase 2; PFAM: Amidohydrolase 2; SPTR: Amidohydrolase 2; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 5197871..5198350 Runella slithyformis DSM 19594 10873043 YP_004657951.1 CDS Runsl_4497 NC_015703.1 5198378 5199496 D PFAM: Amidohydrolase; COGs: COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; InterPro IPR006218:IPR006269; KEGG: sli:Slin_2802 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-8-phosphooctulonate synthase; SPTR: 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; amidohydrolase 5198378..5199496 Runella slithyformis DSM 19594 10873044 YP_004657952.1 CDS Runsl_4498 NC_015703.1 5199675 5200526 D PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR003313:IPR000005; KEGG: cly:Celly_1434 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; AraC protein, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulatory protein, AraC-type; 2-dehydro-3-deoxyphosphooctonate aldolase 5199675..5200526 Runella slithyformis DSM 19594 10873045 YP_004657953.1 CDS Runsl_4499 NC_015703.1 5200598 5201485 R PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: fjo:Fjoh_1731 hypothetical protein; SPTR: uncharacterized protein; AraC family transcriptional regulator complement(5200598..5201485) Runella slithyformis DSM 19594 10873046 YP_004657956.1 CDS Runsl_4502 NC_015703.1 5203127 5204089 D COGs: COG0290 Translation initiation factor 3 (IF-3); HAMAP: Translation initiation factor IF-3; InterPro IPR019814:IPR019815:IPR001288; KEGG: sli:Slin_2218 translation initiation factor IF-3; PFAM: Translation initiation factor 3, C-terminal; Translation initiation factor 3, N-terminal; SPTR: Translation initiation factor IF-3; TIGRFAM: Translation initiation factor 3; hypothetical protein 5203127..5204089 Runella slithyformis DSM 19594 10873049 YP_004657957.1 CDS Runsl_4503 NC_015703.1 5204318 5204872 D PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: sli:Slin_4002 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; translation initiation factor IF-3 5204318..5204872 Runella slithyformis DSM 19594 10873050 YP_004657958.1 CDS Runsl_4504 NC_015703.1 5205148 5206494 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; KEGG: sli:Slin_1460 hypothetical protein; SPTR: uncharacterized protein; oxidoreductase domain-containing protein complement(5205148..5206494) Runella slithyformis DSM 19594 10873051 YP_004657959.1 CDS Runsl_4505 NC_015703.1 5206571 5207134 R KEGG: cpi:Cpin_0105 SMC domain protein; SPTR: SMC domain protein; hypothetical protein complement(5206571..5207134) Runella slithyformis DSM 19594 10873052 YP_004657960.1 CDS Runsl_4506 NC_015703.1 5207194 5208804 D InterPro IPR013658; KEGG: chu:CHU_3578 ATP/GTP-binding; PFAM: SMP-30/Gluconolaconase/LRE-like region; SPTR: uncharacterized protein; SMC domain-containing protein 5207194..5208804 Runella slithyformis DSM 19594 10873053 YP_004657961.1 CDS Runsl_4507 NC_015703.1 5208834 5209688 R PFAM: SMP-30/Gluconolaconase/LRE-like region; InterPro IPR010496; KEGG: dfe:Dfer_4384 protein of unknown function DUF1080; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; SMP-30/gluconolaconase/LRE-like region-containing protein complement(5208834..5209688) Runella slithyformis DSM 19594 10873054 YP_004657962.1 CDS Runsl_4508 NC_015703.1 5209750 5210370 D PFAM: Domain of Unknown Function (DUF1080); COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001:IPR001650:IPR011545; KEGG: chu:CHU_2570 ATP-dependent RNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Helicase-like:DEAD/DEAH box helicase-like; hypothetical protein 5209750..5210370 Runella slithyformis DSM 19594 10873055 YP_004657963.1 CDS Runsl_4509 NC_015703.1 5210562 5211857 D PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; KEGG: dfe:Dfer_4566 Fur family transcriptional regulator protein; SPTR: Fur family transcriptional regulator protein; DEAD/DEAH box helicase 5210562..5211857 Runella slithyformis DSM 19594 10873056 YP_004657964.1 CDS Runsl_4510 NC_015703.1 5211926 5212342 R PFAM: Ferric uptake regulator family; COGs: COG0521 Molybdopterin biosynthesis protein; InterPro IPR001453:IPR020817; KEGG: sli:Slin_5694 molybdenum cofactor synthesis protein; PFAM: Molybdopterin binding; SPTR: Molybdenum cofactor biosynthesis protein Mog; TIGRFAM: Molybdenum cofactor synthesis; Fur family transcriptional regulator complement(5211926..5212342) Runella slithyformis DSM 19594 10873057 YP_004657965.1 CDS Runsl_4511 NC_015703.1 5212500 5213024 D PFAM: Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor synthesis domain; COGs: COG2942 N-acyl-D-glucosamine 2-epimerase; InterPro IPR010819; KEGG: sli:Slin_6381 N-acylglucosamine 2-epimerase; PFAM: N-acylglucosamine 2-epimerase; SPTR: N-acylglucosamine 2-epimerase; molybdenum cofactor synthesis domain-containing protein 5212500..5213024 Runella slithyformis DSM 19594 10873058 YP_004657966.1 CDS Runsl_4512 NC_015703.1 5213184 5214455 D PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); N-acylglucosamine 2-epimerase 5213184..5214455 Runella slithyformis DSM 19594 10873059 YP_004657967.1 CDS Runsl_4513 NC_015703.1 5214521 5215171 D SPTR: uncharacterized protein; hypothetical protein 5214521..5215171 Runella slithyformis DSM 19594 10873060 YP_004657968.1 CDS Runsl_4514 NC_015703.1 5215500 5216324 R COGs: COG1278 Cold shock protein; InterPro IPR011129:IPR002059; KEGG: chu:CHU_2346 cold-shock DNA-binding protein family protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding domain protein; hypothetical protein complement(5215500..5216324) Runella slithyformis DSM 19594 10873061 YP_004657969.1 CDS Runsl_4515 NC_015703.1 5216454 5216645 D PFAM: 'Cold-shock' DNA-binding domain; COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: dfe:Dfer_2563 ApbE family lipoprotein; PFAM: ApbE-like lipoprotein; SPTR: ApbE family lipoprotein; cold-shock DNA-binding domain-containing protein 5216454..5216645 Runella slithyformis DSM 19594 10873062 YP_004657970.1 CDS Runsl_4516 NC_015703.1 5216747 5217766 R PFAM: ApbE family; COGs: COG1045 Serine acetyltransferase; InterPro IPR001451; KEGG: sli:Slin_1590 serine O-acetyltransferase; PFAM: Bacterial transferase hexapeptide repeat; PRIAM: Serine O-acetyltransferase; SPTR: Serine O-acetyltransferase; ApbE family lipoprotein complement(5216747..5217766) Runella slithyformis DSM 19594 10873063 YP_004657971.1 CDS Runsl_4517 NC_015703.1 5218008 5218835 D TIGRFAM: serine O-acetyltransferase; InterPro IPR001647; KEGG: dfe:Dfer_0242 transcriptional regulator, TetR family; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; Serine O-acetyltransferase 5218008..5218835 Runella slithyformis DSM 19594 10873064 YP_004657972.1 CDS Runsl_4518 NC_015703.1 5218948 5219544 R PFAM: Bacterial regulatory proteins, tetR family; COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: cpi:Cpin_6901 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Peroxiredoxin; TetR family transcriptional regulator complement(5218948..5219544) Runella slithyformis DSM 19594 10873065 YP_004657973.1 CDS Runsl_4519 NC_015703.1 5219722 5220189 R PFAM: AhpC/TSA family; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: sli:Slin_1583 ROK family protein; PFAM: ROK; SPTR: ROK family protein; alkyl hydroperoxide reductase complement(5219722..5220189) Runella slithyformis DSM 19594 10873066 YP_004657974.1 CDS Runsl_4520 NC_015703.1 5220386 5221312 D PFAM: ROK family; COGs: COG2947 conserved hypothetical protein; InterPro IPR002740; KEGG: psn:Pedsa_1869 protein of unknown function DUF55; PFAM: Uncharacterised protein family UPF0310; SPTR: Protein of hypothetical function DUF55; ROK family protein 5220386..5221312 Runella slithyformis DSM 19594 10873067 YP_004657975.1 CDS Runsl_4521 NC_015703.1 5221389 5221805 D PFAM: Protein of unknown function DUF55; KEGG: dfe:Dfer_1218 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5221389..5221805 Runella slithyformis DSM 19594 10873068 YP_004657976.1 CDS Runsl_4522 NC_015703.1 5221792 5223462 D COGs: COG1092 SAM-dependent methyltransferase; KEGG: sli:Slin_2221 SAM dependent methyltransferase; SPTR: SAM dependent methyltransferase; hypothetical protein 5221792..5223462 Runella slithyformis DSM 19594 10873069 YP_004657977.1 CDS Runsl_4523 NC_015703.1 5223525 5224406 D PFAM: S-adenosylmethionine-dependent methyltransferase; InterPro IPR019734:IPR001440; KEGG: sli:Slin_2220 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; SAM dependent methyltransferase 5223525..5224406 Runella slithyformis DSM 19594 10873070 YP_004657978.1 CDS Runsl_4524 NC_015703.1 5224487 5225704 D COGs: COG0441 Threonyl-tRNA synthetase; InterProIPR004095:IPR012947:IPR002314:IPR004154:IPR 002320; KEGG: sli:Slin_2219 threonyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding; SPTR: Threonyl-tRNA synthetase; TIGRFAM: Threonyl-tRNA synthetase, class IIa; hypothetical protein 5224487..5225704 Runella slithyformis DSM 19594 10873071 YP_004657979.1 CDS Runsl_4525 NC_015703.1 5225816 5227768 D PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TGS domain; TIGRFAM: threonyl-tRNA synthetase; COGs: COG0337 3-dehydroquinate synthetase; HAMAP: 3-dehydroquinate synthase; InterPro IPR002658:IPR016037; KEGG: dfe:Dfer_3640 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase AroB; PRIAM: 3-dehydroquinate synthase; SPTR: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; threonyl-tRNA synthetase 5225816..5227768 Runella slithyformis DSM 19594 10873072 YP_004657980.1 CDS Runsl_4526 NC_015703.1 5227941 5228969 D PFAM: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; KEGG: dfe:Dfer_3639 lipoprotein; SPTR: Lipoprotein; 3-dehydroquinate synthase 5227941..5228969 Runella slithyformis DSM 19594 10873073 YP_004657981.1 CDS Runsl_4527 NC_015703.1 5229071 5229640 D InterPro IPR020818; KEGG: sli:Slin_1082 chaperonin Cpn10; PFAM: Chaperonin Cpn10; SPTR: Chaperonin Cpn10; lipoprotein 5229071..5229640 Runella slithyformis DSM 19594 10873074 YP_004657982.1 CDS Runsl_4528 NC_015703.1 5229750 5230130 R PFAM: Chaperonin 10 Kd subunit; InterPro IPR019734:IPR001440; KEGG: sli:Slin_1363 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; chaperonin Cpn10 complement(5229750..5230130) Runella slithyformis DSM 19594 10873075 YP_004657983.1 CDS Runsl_4529 NC_015703.1 5230212 5230718 R COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: chu:CHU_1408 acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA oxidase/dehydrogenase, type 1; PRIAM: Glutaryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase; hypothetical protein complement(5230212..5230718) Runella slithyformis DSM 19594 10873076 YP_004657984.1 CDS Runsl_4530 NC_015703.1 5230927 5232114 D PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: fbc:FB2170_00720 dolichyl-phosphate-mannose-protein mannosyltransferase; PFAM: Glycosyl transferase, family 39; SPTR: Dolichyl-phosphate-mannose-protein mannosyltransferase; glutaryl-CoA dehydrogenase 5230927..5232114 Runella slithyformis DSM 19594 10873077 YP_004657985.1 CDS Runsl_4531 NC_015703.1 5232186 5233847 D KEGG: phe:Phep_0720 hypothetical protein; SPTR: uncharacterized protein; glycosyl transferase family protein 5232186..5233847 Runella slithyformis DSM 19594 10873078 YP_004657986.1 CDS Runsl_4532 NC_015703.1 5234494 5234961 D KEGG: dfe:Dfer_3153 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5234494..5234961 Runella slithyformis DSM 19594 10873079 YP_004657987.1 CDS Runsl_4533 NC_015703.1 5235065 5235796 D COGs: COG1197 Transcription-repair coupling factor (superfamily II helicase); InterProIPR014001:IPR001650:IPR003711:IPR011545:IPR 005118:IPR004576; KEGG: dfe:Dfer_3695 transcription-repair coupling factor; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Transcription factor CarD; DNA/RNA helicase, C-terminal; Transcription-repair-coupling factor; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Transcription-repair coupling factor; TIGRFAM: Transcription-repair coupling factor; hypothetical protein 5235065..5235796 Runella slithyformis DSM 19594 10873080 YP_004657988.1 CDS Runsl_4534 NC_015703.1 5235974 5239336 D PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd); transcription-repair coupling factor 5235974..5239336 Runella slithyformis DSM 19594 10873081 YP_004657989.1 CDS Runsl_4535 NC_015703.1 5239453 5239635 D KEGG: sli:Slin_6323 lipoprotein; SPTR: lipoprotein; hypothetical protein 5239453..5239635 Runella slithyformis DSM 19594 10873082 YP_004657990.1 CDS Runsl_4536 NC_015703.1 5239826 5240371 R KEGG: sli:Slin_3385 hypothetical protein; SPTR: uncharacterized protein; lipoprotein complement(5239826..5240371) Runella slithyformis DSM 19594 10873083 YP_004657991.1 CDS Runsl_4537 NC_015703.1 5240494 5241285 R KEGG: sli:Slin_5712 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5240494..5241285) Runella slithyformis DSM 19594 10873084 YP_004657992.1 CDS Runsl_4538 NC_015703.1 5241521 5242042 D Prodigal; manually curated; hypothetical protein 5241521..5242042 Runella slithyformis DSM 19594 10873085 YP_004657993.1 CDS Runsl_4540 NC_015703.1 5243012 5243230 D COGs: COG4632 Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase; InterPro IPR018711; KEGG: phe:Phep_0002 hypothetical protein; PFAM: Protein of unknown function DUF2233, periplasmic; SPTR: uncharacterized protein; hypothetical protein 5243012..5243230 Runella slithyformis DSM 19594 10873087 YP_004657994.1 CDS Runsl_4541 NC_015703.1 5243265 5244143 R PFAM: Predicted periplasmic protein (DUF2233); KEGG: dfe:Dfer_5769 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5243265..5244143) Runella slithyformis DSM 19594 10873088 YP_004657995.1 CDS Runsl_4542 NC_015703.1 5244306 5244875 D COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: sli:Slin_0656 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; hypothetical protein 5244306..5244875 Runella slithyformis DSM 19594 10873089 YP_004657996.1 CDS Runsl_4543 NC_015703.1 5245358 5246131 D PFAM: alpha/beta hydrolase fold; InterPro IPR002123; KEGG: dfe:Dfer_4159 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; alpha/beta hydrolase 5245358..5246131 Runella slithyformis DSM 19594 10873090 YP_004657997.1 CDS Runsl_4544 NC_015703.1 5246271 5247095 D PFAM: Acyltransferase; KEGG: sli:Slin_6034 hypothetical protein; SPTR: uncharacterized protein; phospholipid/glycerol acyltransferase 5246271..5247095 Runella slithyformis DSM 19594 10873091 YP_004657998.1 CDS Runsl_4545 NC_015703.1 5247115 5247678 R COGs: COG0696 Phosphoglyceromutase; HAMAP: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; InterPro IPR011258:IPR006124:IPR005995; KEGG: dfe:Dfer_4375 phosphoglyceromutase; PFAM: BPG-independent PGAM, N-terminal; Metalloenzyme; PRIAM: Phosphoglycerate mutase; SPTR: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; TIGRFAM: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; hypothetical protein complement(5247115..5247678) Runella slithyformis DSM 19594 10873092 YP_004657999.1 CDS Runsl_4546 NC_015703.1 5247748 5249286 R PFAM: Metalloenzyme superfamily; BPG-independent PGAM N-terminus (iPGM_N); TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: sli:Slin_5030 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; PRIAM: Acid phosphatase; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: Protein tyrosine phosphatase; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase complement(5247748..5249286) Runella slithyformis DSM 19594 10873093 YP_004658000.1 CDS Runsl_4547 NC_015703.1 5249303 5249794 R PFAM: Low molecular weight phosphotyrosine protein phosphatase; KEGG: sli:Slin_5031 hypothetical protein; SPTR: uncharacterized protein; protein tyrosine phosphatase complement(5249303..5249794) Runella slithyformis DSM 19594 10873094 YP_004658001.1 CDS Runsl_4548 NC_015703.1 5249941 5250255 R COGs: COG0148 Enolase; HAMAP: Enolase; InterPro IPR020811:IPR020810:IPR000941; KEGG: dfe:Dfer_4373 enolase; PFAM: Enolase, C-terminal; Enolase, N-terminal; PRIAM: Phosphopyruvate hydratase; SPTR: Enolase; TIGRFAM: Enolase; hypothetical protein complement(5249941..5250255) Runella slithyformis DSM 19594 10873095 YP_004658002.1 CDS Runsl_4549 NC_015703.1 5250327 5251604 R PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: dfe:Dfer_3140 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: LL-diaminopimelate aminotransferase; SPTR: Aminotransferase class I and II; enolase complement(5250327..5251604) Runella slithyformis DSM 19594 10873096 YP_004658003.1 CDS Runsl_4550 NC_015703.1 5251942 5253096 R PFAM: Aminotransferase class I and II; InterPro IPR008915; KEGG: sli:Slin_2710 peptidase M50; PFAM: Peptidase M50; SPTR: Peptidase M50; LL-diaminopimelate aminotransferase complement(5251942..5253096) Runella slithyformis DSM 19594 10873097 YP_004658004.1 CDS Runsl_4551 NC_015703.1 5253173 5254330 R PFAM: Peptidase M50; COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834:IPR006402:IPR006439; KEGG: dfe:Dfer_5618 HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; peptidase M50 complement(5253173..5254330) Runella slithyformis DSM 19594 10873098 YP_004658005.1 CDS Runsl_4552 NC_015703.1 5254367 5254987 R PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; Epoxide hydrolase N-terminal domain-like phosphatase; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; COGs: COG0825 Acetyl-CoA carboxylase alpha subunit; HAMAP: Acetyl-CoA carboxylase, alpha subunit; InterPro IPR020582:IPR001095; KEGG: sli:Slin_2715 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region; PRIAM: Acetyl-CoA carboxylase; SPTR: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: Acetyl-CoA carboxylase, alpha subunit; HAD superfamily hydrolase complement(5254367..5254987) Runella slithyformis DSM 19594 10873099 YP_004658006.1 CDS Runsl_4553 NC_015703.1 5255063 5256016 R PFAM: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR011108; KEGG: sli:Slin_2716 beta-lactamase; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: Beta-lactamase domain protein; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha complement(5255063..5256016) Runella slithyformis DSM 19594 10873100 YP_004658007.1 CDS Runsl_4554 NC_015703.1 5256025 5257467 R PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain; COGs: COG1522 Transcriptional regulators; InterPro IPR019888:IPR019887; KEGG: dfe:Dfer_5148 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type; SPTR: Transcriptional regulator, AsnC family; RNA-metabolising metallo-beta-lactamase complement(5256025..5257467) Runella slithyformis DSM 19594 10873101 YP_004658008.1 CDS Runsl_4555 NC_015703.1 5257652 5258200 R PFAM: AsnC family; manually curated; AsnC family transcriptional regulator complement(5257652..5258200) Runella slithyformis DSM 19594 10873102 YP_004658009.1 CDS Runsl_4557 NC_015703.1 5260325 5260714 R hypothetical protein complement(5260325..5260714) Runella slithyformis DSM 19594 10873104 YP_004658010.1 CDS Runsl_4558 NC_015703.1 5260969 5261244 R hypothetical protein complement(5260969..5261244) Runella slithyformis DSM 19594 10873105 YP_004658011.1 CDS Runsl_4559 NC_015703.1 5262021 5263196 D PFAM: Galactokinase galactose-binding signature; GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: galactokinase; COGs: COG0578 Glycerol-3-phosphate dehydrogenase; InterPro IPR006076; KEGG: dfe:Dfer_2005 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; PRIAM: Glycerol-3-phosphate dehydrogenase; SPTR: FAD dependent oxidoreductase; galactokinase 5262021..5263196 Runella slithyformis DSM 19594 10873107 YP_004658012.1 CDS Runsl_4560 NC_015703.1 5263267 5264919 D PFAM: FAD dependent oxidoreductase; COGs: COG0393 conserved hypothetical protein; HAMAP: UPF0145 protein ybjQ; InterPro IPR002765; KEGG: sli:Slin_0329 hypothetical protein; PFAM: Uncharacterised protein family UPF0145; SPTR: UPF0145 protein Slin_0329; glycerol-3-phosphate dehydrogenase 5263267..5264919 Runella slithyformis DSM 19594 10873108 YP_004658013.1 CDS Runsl_4561 NC_015703.1 5265130 5265465 D PFAM: Domain of unknown function (DUF74); COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; KEGG: dfe:Dfer_4675 phosphoribosyltransferase; SPTR: Phosphoribosyltransferase; hypothetical protein 5265130..5265465 Runella slithyformis DSM 19594 10873109 YP_004658014.1 CDS Runsl_4562 NC_015703.1 5265516 5266013 R PFAM: Phosphoribosyl transferase domain; KEGG: sli:Slin_6183 hypothetical protein; SPTR: uncharacterized protein; manually curated; phosphoribosyltransferase complement(5265516..5266013) Runella slithyformis DSM 19594 10873110 YP_004658015.1 CDS Runsl_4563 NC_015703.1 5266112 5266531 D KEGG: sli:Slin_1183 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5266112..5266531 Runella slithyformis DSM 19594 10873111 YP_004658016.1 CDS Runsl_4564 NC_015703.1 5266610 5267506 R COGs: COG2515 1-aminocyclopropane-1-carboxylate deaminase; KEGG: sli:Slin_1391 pyridoxal-5'-phosphate-dependent protein subunit beta; SPTR: Pyridoxal-5'-phosphate-dependent protein beta subunit; hypothetical protein complement(5266610..5267506) Runella slithyformis DSM 19594 10873112 YP_004658017.1 CDS Runsl_4565 NC_015703.1 5267523 5268416 D PFAM: Pyridoxal-phosphate dependent enzyme; KEGG: sli:Slin_2301 hypothetical protein; SPTR: uncharacterized protein; manually curated; pyridoxal-5'-phosphate-dependent protein subunit beta 5267523..5268416 Runella slithyformis DSM 19594 10873113 YP_004658018.1 CDS Runsl_4566 NC_015703.1 5268472 5269011 R COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR000845:IPR011268:IPR011270; KEGG: sli:Slin_3943 purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: Nucleoside phosphorylase; PRIAM: Purine-nucleoside phosphorylase; SPTR: Purine nucleoside phosphorylase I, inosine and guanosine-specific; TIGRFAM: Purine nucleoside phosphorylase I, inosine/guanosine-specific; Inosine guanosine/xanthosine phosphorylase; hypothetical protein complement(5268472..5269011) Runella slithyformis DSM 19594 10873114 YP_004658019.1 CDS Runsl_4567 NC_015703.1 5269247 5270086 R PFAM: Phosphorylase superfamily; TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase; KEGG: dfe:Dfer_0226 hypothetical protein; SPTR: uncharacterized protein; purine nucleoside phosphorylase I complement(5269247..5270086) Runella slithyformis DSM 19594 10873115 YP_004658020.1 CDS Runsl_4568 NC_015703.1 5270181 5271443 R PFAM: 3-carboxy-cis,cis-muconate lactonizing enzyme; HAMAP: Ribosomal protein S20; InterPro IPR002583; KEGG: dfe:Dfer_0225 30S ribosomal protein S20; PFAM: Ribosomal protein S20; SPTR: 30S ribosomal protein S20; TIGRFAM: Ribosomal protein S20; hypothetical protein complement(5270181..5271443) Runella slithyformis DSM 19594 10873116 YP_004658021.1 CDS Runsl_4569 NC_015703.1 5271561 5271824 R PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20; COGs: COG4105 DNA uptake lipoprotein; InterPro IPR019734:IPR001440; KEGG: sli:Slin_2038 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; 30S ribosomal protein S20 complement(5271561..5271824) Runella slithyformis DSM 19594 10873117 YP_004658022.1 CDS Runsl_4570 NC_015703.1 5272193 5275210 D KEGG: dfe:Dfer_1051 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5272193..5275210 Runella slithyformis DSM 19594 10873118 YP_004658023.1 CDS Runsl_4571 NC_015703.1 5275265 5276923 D PFAM: TonB dependent receptor; InterPro IPR007730; KEGG: sli:Slin_2040 sporulation domain protein; PFAM: Sporulation/cell division region, bacteria; SPTR: Sporulation domain protein; hypothetical protein 5275265..5276923 Runella slithyformis DSM 19594 10873119 YP_004658024.1 CDS Runsl_4572 NC_015703.1 5277082 5278203 D KEGG: sli:Slin_1995 hypothetical protein; SPTR: uncharacterized protein; sporulation domain-containing protein 5277082..5278203 Runella slithyformis DSM 19594 10873120 YP_004658025.1 CDS Runsl_4573 NC_015703.1 5278318 5279244 D COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR013221:IPR004101:IPR001645; KEGG: psn:Pedsa_1924 FolC bifunctional protein; PFAM: Mur ligase, central; Mur ligase, C-terminal; PRIAM: Tetrahydrofolate synthase; SPTR: FolC bifunctional protein; TIGRFAM: Folylpolyglutamate synthetase; hypothetical protein 5278318..5279244 Runella slithyformis DSM 19594 10873121 YP_004658026.1 CDS Runsl_4574 NC_015703.1 5279341 5280639 D PFAM: Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase; COGs: COG0220 S-adenosylmethionine-dependent methyltransferase; HAMAP: tRNA (guanine-N(7)-)-methyltransferase; InterPro IPR003358; KEGG: sli:Slin_1997 tRNA (guanine-N(7)-)-methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase; PRIAM: tRNA (guanine-N(7)-)-methyltransferase; SPTR: tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N-7) methyltransferase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 5279341..5280639 Runella slithyformis DSM 19594 10873122 YP_004658027.1 CDS Runsl_4575 NC_015703.1 5280683 5281339 D PFAM: methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterPro IPR020828:IPR020829:IPR006424; KEGG: cpi:Cpin_1397 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: Glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; tRNA (guanine-N(7)-)-methyltransferase 5280683..5281339 Runella slithyformis DSM 19594 10873123 YP_004658028.1 CDS Runsl_4576 NC_015703.1 5281538 5282551 R PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; COGs: COG2171 Tetrahydrodipicolinate N-succinyltransferase; InterPro IPR001451; KEGG: dfe:Dfer_1045 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; PRIAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; SPTR:2,3,4,5-tetrahydropyridine-2,6-dicarboxylateN- succinyltransferase; glyceraldehyde-3-phosphate dehydrogenase, type I complement(5281538..5282551) Runella slithyformis DSM 19594 10873124 YP_004658029.1 CDS Runsl_4577 NC_015703.1 5283195 5284007 D TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: sli:Slin_2000 XRE family transcriptional regulator; SPTR: Transcriptional regulator, XRE family; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 5283195..5284007 Runella slithyformis DSM 19594 10873125 YP_004658030.1 CDS Runsl_4578 NC_015703.1 5284501 5285061 D PFAM: Helix-turn-helix; hypothetical protein 5284501..5285061 Runella slithyformis DSM 19594 10873126 YP_004658031.1 CDS Runsl_4579 NC_015703.1 5285777 5286403 R InterPro IPR019734:IPR001440; KEGG: sli:Slin_2001 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: TPR repeat-containing protein; hypothetical protein complement(5285777..5286403) Runella slithyformis DSM 19594 10873127 YP_004658032.1 CDS Runsl_4580 NC_015703.1 5286599 5288038 R COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR002205:IPR006691:IPR005743; KEGG: dfe:Dfer_1029 DNA gyrase, A subunit; PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit A or C-terminal; SPTR: DNA gyrase, A subunit; TIGRFAM: DNA gyrase, subunit A; hypothetical protein complement(5286599..5288038) Runella slithyformis DSM 19594 10873128 YP_004658033.1 CDS Runsl_4581 NC_015703.1 5288196 5290718 R PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: DNA gyrase, A subunit; DNA gyrase subunit A complement(5288196..5290718) Runella slithyformis DSM 19594 10873129 YP_004658034.1 CDS Runsl_4582 NC_015703.1 5290776 5291003 R hypothetical protein complement(5290776..5291003) Runella slithyformis DSM 19594 10873130 YP_004658035.1 CDS Runsl_4583 NC_015703.1 5291420 5293297 R PFAM: Domain of Unknown Function (DUF349); COGs: COG0259 Pyridoxamine-phosphate oxidase; HAMAP: Pyridoxamine 5'-phosphate oxidase; InterPro IPR011576:IPR019576:IPR000659; KEGG: sli:Slin_2893 pyridoxamine 5'-phosphate oxidase; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal; PRIAM: Pyridoxal 5'-phosphate synthase; SPTR: Pyridoxine/pyridoxamine 5'-phosphate oxidase; TIGRFAM: Pyridoxamine 5'-phosphate oxidase; hypothetical protein complement(5291420..5293297) Runella slithyformis DSM 19594 10873133 YP_004658036.1 CDS Runsl_4584 NC_015703.1 5293384 5294028 D PFAM: Pyridoxamine 5'-phosphate oxidase; Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; TIGRFAM: pyridoxamine-phosphate oxidase; InterPro IPR002790:IPR002059; KEGG: cch:Cag_1985 cold shock protein; PFAM: Protein of unknown function DUF88; Cold-shock protein, DNA-binding; SPTR: Cold shock protein; pyridoxine/pyridoxamine 5'-phosphate oxidase 5293384..5294028 Runella slithyformis DSM 19594 10873134 YP_004658037.1 CDS Runsl_4585 NC_015703.1 5294165 5295109 D PFAM: 'Cold-shock' DNA-binding domain; Protein of unknown function DUF88; COGs: COG2942 N-acyl-D-glucosamine 2-epimerase; InterPro IPR010819; KEGG: dfe:Dfer_1975 N-acylglucosamine 2-epimerase; PFAM: N-acylglucosamine 2-epimerase; SPTR: N-acylglucosamine 2-epimerase; hypothetical protein 5294165..5295109 Runella slithyformis DSM 19594 10873135 YP_004658038.1 CDS Runsl_4586 NC_015703.1 5295151 5296323 R PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); KEGG: dfe:Dfer_0200 hypothetical protein; SPTR: uncharacterized protein; N-acylglucosamine 2-epimerase complement(5295151..5296323) Runella slithyformis DSM 19594 10873136 YP_004658039.1 CDS Runsl_4587 NC_015703.1 5296400 5297473 R PFAM: S1/P1 Nuclease; InterPro IPR013097; KEGG: sli:Slin_0525 stress responsive alpha-beta barrel domain protein; PFAM: Stress responsive alpha-beta barrel; SPTR: Stress responsive alpha-beta barrel domain protein; hypothetical protein complement(5296400..5297473) Runella slithyformis DSM 19594 10873137 YP_004658040.1 CDS Runsl_4588 NC_015703.1 5297781 5298179 D PFAM: Stress responsive A/B Barrel Domain; InterPro IPR018764; KEGG: sli:Slin_3072 anti-sigma-K factor RskA; PFAM: Anti-sigma K factor RskA; SPTR: Anti-sigma-K factor RskA; stress responsive alpha-beta barrel domain-containing protein 5297781..5298179 Runella slithyformis DSM 19594 10873138 YP_004658041.1 CDS Runsl_4589 NC_015703.1 5298249 5299046 R PFAM: Anti-sigma-K factor rskA; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_3071 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; anti-sigma-K factor RskA complement(5298249..5299046) Runella slithyformis DSM 19594 10873139 YP_004658042.1 CDS Runsl_4590 NC_015703.1 5299043 5299582 R PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1092 SAM-dependent methyltransferase; InterPro IPR002478; KEGG: sli:Slin_0528 methyltransferase; SMART: Pseudouridine synthase/archaeosine transglycosylase; SPTR: Methyltransferase; ECF subfamily RNA polymerase sigma-24 subunit complement(5299043..5299582) Runella slithyformis DSM 19594 10873140 YP_004658043.1 CDS Runsl_4591 NC_015703.1 5299782 5300972 R PFAM: S-adenosylmethionine-dependent methyltransferase; KEGG: sli:Slin_2007 HPr kinase; SPTR: HPr kinase; PUA domain-containing protein complement(5299782..5300972) Runella slithyformis DSM 19594 10873141 YP_004658044.1 CDS Runsl_4592 NC_015703.1 5300982 5301872 R PFAM: HPr Serine kinase C-terminal domain; hypothetical protein complement(5300982..5301872) Runella slithyformis DSM 19594 10873142 YP_004658045.1 CDS Runsl_4593 NC_015703.1 5301859 5302011 R COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR000583:IPR001962; KEGG: srm:SRM_00271 asparagine synthetase B (glutamine-hydrolyzing); PFAM: Asparagine synthase; Glutamine amidotransferase, class-II; PRIAM: Asparagine synthase (glutamine-hydrolyzing); SPTR: Asparagine synthetase B (Glutamine-hydrolyzing); hypothetical protein complement(5301859..5302011) Runella slithyformis DSM 19594 10873143 YP_004658046.1 CDS Runsl_4594 NC_015703.1 5302615 5304684 R PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307:IPR006311; KEGG: sli:Slin_0527 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; asparagine synthase complement(5302615..5304684) Runella slithyformis DSM 19594 10873144 YP_004658047.1 CDS Runsl_4595 NC_015703.1 5304791 5305627 D PFAM: Xylose isomerase-like TIM barrel; COGs: COG2949 Uncharacterized membrane protein; InterPro IPR003848; KEGG: sli:Slin_2226 hypothetical protein; PFAM: Protein of unknown function DUF218; SPTR: uncharacterized protein; xylose isomerase domain-containing protein 5304791..5305627 Runella slithyformis DSM 19594 10873145 YP_004658048.1 CDS Runsl_4596 NC_015703.1 5305802 5306515 R PFAM: DUF218 domain; COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR002205; KEGG: sli:Slin_2227 DNA topoisomerase (ATP-hydrolyzing); PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit A or C-terminal; SPTR: DNA topoisomerase (ATP-hydrolyzing); hypothetical protein complement(5305802..5306515) Runella slithyformis DSM 19594 10873146 YP_004658049.1 CDS Runsl_4597 NC_015703.1 5306524 5309250 R PFAM: DNA gyrase/topoisomerase IV, subunit A; COGs: COG0408 Coproporphyrinogen III oxidase; InterPro IPR001260; KEGG: sli:Slin_2294 coproporphyrinogen oxidase; PFAM: Coproporphyrinogen III oxidase; PRIAM: Coproporphyrinogen oxidase; SPTR: Coproporphyrinogen oxidase; DNA topoisomerase complement(5306524..5309250) Runella slithyformis DSM 19594 10873147 YP_004658050.1 CDS Runsl_4598 NC_015703.1 5309298 5310179 R PFAM: Coproporphyrinogen III oxidase; COGs: COG4123 O-methyltransferase; InterPro IPR007848; KEGG: sli:Slin_2411 methyltransferase small; PFAM: Methyltransferase small; SPTR: Methyltransferase small; coproporphyrinogen oxidase complement(5309298..5310179) Runella slithyformis DSM 19594 10873148 YP_004658051.1 CDS Runsl_4599 NC_015703.1 5310210 5311022 R PFAM: Methyltransferase small domain; COGs: COG3341 double-stranded RNA/RNA-DNA hybrid binding protein; KEGG: dfe:Dfer_5118 ribonuclease H-related protein; SPTR: Ribonuclease H-related protein; methyltransferase small complement(5310210..5311022) Runella slithyformis DSM 19594 10873149 YP_004658052.1 CDS Runsl_4600 NC_015703.1 5311024 5311656 R PFAM: RNase H; Caulimovirus viroplasmin; KEGG: dfe:Dfer_5678 hypothetical protein; SPTR: uncharacterized protein; ribonuclease H-like protein complement(5311024..5311656) Runella slithyformis DSM 19594 10873150 YP_004658053.1 CDS Runsl_4601 NC_015703.1 5311780 5312811 D hypothetical protein 5311780..5312811 Runella slithyformis DSM 19594 10873151 YP_004658054.1 CDS Runsl_4602 NC_015703.1 5313202 5313336 R COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: dfe:Dfer_2513 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; hypothetical protein complement(5313202..5313336) Runella slithyformis DSM 19594 10873152 YP_004658055.1 CDS Runsl_4603 NC_015703.1 5313457 5313912 D PFAM: Response regulator receiver domain; COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); HAMAP: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; InterPro IPR003699; KEGG: dfe:Dfer_3300 queuosine biosynthesis protein; PFAM: Queuosine biosynthesis protein; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 2; response regulator receiver protein 5313457..5313912 Runella slithyformis DSM 19594 10873153 YP_004658056.1 CDS Runsl_4604 NC_015703.1 5313909 5315180 R PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; KEGG: dfe:Dfer_3301 hypothetical protein; SPTR: uncharacterized protein; S-adenosylmethionine:tRNAribosyltransferase- isomerase complement(5313909..5315180) Runella slithyformis DSM 19594 10873154 YP_004658057.1 CDS Runsl_4605 NC_015703.1 5315199 5315708 R COGs: COG1530 Ribonuclease G and E; InterPro IPR003029:IPR019307:IPR004659; KEGG: dfe:Dfer_4433 ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain; SPTR: Ribonuclease, Rne/Rng family; TIGRFAM: Ribonuclease E/G; hypothetical protein complement(5315199..5315708) Runella slithyformis DSM 19594 10873155 YP_004658058.1 CDS Runsl_4606 NC_015703.1 5315802 5317361 R PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family; KEGG: pgn:PGN_1392 hypothetical protein; SPTR: uncharacterized protein; manually curated; ribonuclease, Rne/Rng family complement(5315802..5317361) Runella slithyformis DSM 19594 10873156 YP_004658059.1 CDS Runsl_4607 NC_015703.1 5317501 5317590 R KEGG: sli:Slin_5981 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5317501..5317590) Runella slithyformis DSM 19594 10873157 YP_004658060.1 CDS Runsl_4608 NC_015703.1 5317674 5318522 R COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: sli:Slin_5982 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; SPTR: Histone family protein DNA-binding protein; hypothetical protein complement(5317674..5318522) Runella slithyformis DSM 19594 10873158 YP_004658061.1 CDS Runsl_4609 NC_015703.1 5318563 5318847 R PFAM: Bacterial DNA-binding protein; COGs: COG1194 A/G-specific DNA glycosylase; InterPro IPR003265:IPR003651:IPR005760; KEGG: sli:Slin_5983 A/G-specific adenine glycosylase; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; SMART: HhH-GPD domain; SPTR: A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; histone family protein DNA-binding protein complement(5318563..5318847) Runella slithyformis DSM 19594 10873159 YP_004658062.1 CDS Runsl_4610 NC_015703.1 5319021 5320082 D PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: A/G-specific adenine glycosylase; A/G-specific adenine glycosylase 5319021..5320082 Runella slithyformis DSM 19594 10873160 YP_004658063.1 CDS Runsl_4611 NC_015703.1 5319999 5320178 R COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424:IPR011344; KEGG: dfe:Dfer_4439 single-strand binding protein; PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; hypothetical protein complement(5319999..5320178) Runella slithyformis DSM 19594 10873161 YP_004658064.1 CDS Runsl_4612 NC_015703.1 5320228 5320704 D PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb); InterPro IPR004360; KEGG: psl:Psta_2414 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; single-strand binding protein 5320228..5320704 Runella slithyformis DSM 19594 10873162 YP_004658065.1 CDS Runsl_4613 NC_015703.1 5320940 5321323 D PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; HAMAP: Peptide methionine sulfoxide reductase msrB; InterPro IPR002579; KEGG: tel:tlr1214 methionine sulfoxide reductase B; PFAM: Methionine sulphoxide reductase B; PRIAM: Peptide-methionine (R)-S-oxide reductase; SPTR: Peptide methionine sulfoxide reductase MsrB; TIGRFAM: Methionine sulphoxide reductase B; Glyoxalase/bleomycin resistance protein/dioxygenase 5320940..5321323 Runella slithyformis DSM 19594 10873163 YP_004658066.1 CDS Runsl_4614 NC_015703.1 5321340 5321816 R PFAM: SelR domain; TIGRFAM: methionine-R-sulfoxide reductase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: ana:alr4456 tropinone reductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Tropinone reductase I; SPTR: Alr4456 protein; peptide methionine sulfoxide reductase complement(5321340..5321816) Runella slithyformis DSM 19594 10873164 YP_004658067.1 CDS Runsl_4615 NC_015703.1 5321890 5322654 D PFAM: short chain dehydrogenase; COGs: COG0738 Fucose permease; InterPro IPR011701:IPR005964; KEGG: dfe:Dfer_0466 glucose/galactose transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Glucose/galactose transporter; TIGRFAM: Bacterial glucose/galactose transporter; Tropinone reductase I 5321890..5322654 Runella slithyformis DSM 19594 10873165 YP_004658068.1 CDS Runsl_4616 NC_015703.1 5322759 5323979 D PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter; COGs: COG0153 Galactokinase; InterPro IPR006204:IPR013750; KEGG: dfe:Dfer_0465 GHMP kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal; SPTR: GHMP kinase; glucose/galactose transporter 5322759..5323979 Runella slithyformis DSM 19594 10873166 YP_004658069.1 CDS Runsl_4617 NC_015703.1 5324002 5325132 D PFAM: Galactokinase galactose-binding signature; GHMP kinases C terminal; GHMP kinases N terminal domain; GHMP kinase 5324002..5325132 Runella slithyformis DSM 19594 10873167 YP_004658070.1 CDS Runsl_4618 NC_015703.1 5325327 5325485 R COGs: COG3424 naringenin-chalcone synthase; InterPro IPR001099:IPR012328; KEGG: sli:Slin_2532 chalcone and stilbene synthase domain protein; PFAM: Chalcone/stilbene synthase, N-terminal; Chalcone/stilbene synthase, C-terminal; PRIAM: Naringenin-chalcone synthase; SPTR: Naringenin-chalcone synthase; hypothetical protein complement(5325327..5325485) Runella slithyformis DSM 19594 10873168 YP_004658071.1 CDS Runsl_4619 NC_015703.1 5325654 5326769 D PFAM: Chalcone and stilbene synthases, N-terminal domain; Chalcone and stilbene synthases, C-terminal domain; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: bth:BT_2184 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; Naringenin-chalcone synthase 5325654..5326769 Runella slithyformis DSM 19594 10873169 YP_004658072.1 CDS Runsl_4620 NC_015703.1 5326890 5327396 D PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; ECF subfamily RNA polymerase sigma-24 subunit 5326890..5327396 Runella slithyformis DSM 19594 10873170 YP_004658073.1 CDS Runsl_4621 NC_015703.1 5327393 5327590 D COGs: COG0682 Prolipoprotein diacylglyceryltransferase; HAMAP: Prolipoprotein diacylglyceryl transferase; InterPro IPR001640; KEGG: dfe:Dfer_4316 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; SPTR: Prolipoprotein diacylglyceryl transferase; TIGRFAM: Prolipoprotein diacylglyceryl transferase; hypothetical protein 5327393..5327590 Runella slithyformis DSM 19594 10873171 YP_004658074.1 CDS Runsl_4622 NC_015703.1 5327611 5328474 D PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; InterPro IPR003675; KEGG: cps:CPS_2226 CAAX amino terminal protease; PFAM: Abortive infection protein; SPTR: CAAX amino terminal protease; prolipoprotein diacylglyceryl transferase 5327611..5328474 Runella slithyformis DSM 19594 10873172 YP_004658075.1 CDS Runsl_4623 NC_015703.1 5328542 5329711 D PFAM: CAAX amino terminal protease; COGs: COG1501 Alpha-glucosidase 31 of glycosyl hydrolase; InterPro IPR000322; KEGG: ngr:NAEGRDRAFT_70656 hypothetical protein; PFAM: Glycoside hydrolase, family 31; SPTR: uncharacterized protein; abortive infection protein 5328542..5329711 Runella slithyformis DSM 19594 10873173 YP_004658076.1 CDS Runsl_4624 NC_015703.1 5329790 5331550 D PFAM: Glycosyl hydrolases family 31; COGs: COG0025 NhaP-type Na+/H+ and K+/H+ antiporter; InterPro IPR006153:IPR004705; KEGG: dfe:Dfer_2874 Na+/H+ antiporter; PFAM: Cation/H+ exchanger; SPTR: Na+/H+ antiporter; TIGRFAM: Na+/H+ exchanger, yjcE-like, bacteria; glycoside hydrolase 5329790..5331550 Runella slithyformis DSM 19594 10873174 YP_004658077.1 CDS Runsl_4625 NC_015703.1 5331561 5333153 R PFAM: Sodium/hydrogen exchanger family; TIGRFAM: Na+/H+ antiporter, bacterial form; KEGG: psn:Pedsa_1428 hypothetical protein; SPTR: uncharacterized protein; Na+/H+ antiporter complement(5331561..5333153) Runella slithyformis DSM 19594 10873175 YP_004658078.1 CDS Runsl_4626 NC_015703.1 5333456 5333575 D KEGG: sli:Slin_1923 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5333456..5333575 Runella slithyformis DSM 19594 10873176 YP_004658079.1 CDS Runsl_4627 NC_015703.1 5333786 5334421 D COGs: COG0661 unusual protein kinase; InterPro IPR004147; KEGG: sli:Slin_1924 ABC transporter; PFAM: ABC-1; SPTR: ABC-1 domain protein; hypothetical protein 5333786..5334421 Runella slithyformis DSM 19594 10873177 YP_004658080.1 CDS Runsl_4628 NC_015703.1 5334482 5335816 D PFAM: Phosphotransferase enzyme family; ABC1 family; KEGG: sli:Slin_6335 hypothetical protein; SPTR: uncharacterized protein; ABC transporter 5334482..5335816 Runella slithyformis DSM 19594 10873178 YP_004658081.1 CDS Runsl_4629 NC_015703.1 5335957 5337471 R KEGG: dfe:Dfer_0028 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5335957..5337471) Runella slithyformis DSM 19594 10873179 YP_004658082.1 CDS Runsl_4630 NC_015703.1 5337520 5339181 R KEGG: dfe:Dfer_0029 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5337520..5339181) Runella slithyformis DSM 19594 10873180 YP_004658083.1 CDS Runsl_4631 NC_015703.1 5339323 5339769 D COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: sli:Slin_2250 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; hypothetical protein 5339323..5339769 Runella slithyformis DSM 19594 10873181 YP_004658084.1 CDS Runsl_4632 NC_015703.1 5339777 5340655 D PFAM: alpha/beta hydrolase fold; KEGG: lby:Lbys_3413 glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; alpha/beta hydrolase 5339777..5340655 Runella slithyformis DSM 19594 10873182 YP_004658085.1 CDS Runsl_4633 NC_015703.1 5340683 5341735 R PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG3537 alpha-1 2-mannosidase; InterPro IPR012939:IPR005887; KEGG: dfe:Dfer_4742 alpha-1,2-mannosidase; PFAM: Glycosyl hydrolase 92; SPTR: Alpha-1,2-mannosidase; TIGRFAM: Alpha-1,2-mannosidase; glyoxalase/bleomycin resistance protein/dioxygenase complement(5340683..5341735) Runella slithyformis DSM 19594 10873183 YP_004658086.1 CDS Runsl_4634 NC_015703.1 5341816 5344101 R PFAM: Glycosyl hydrolase 92; TIGRFAM: alpha-1,2-mannosidase; alpha-1,2-mannosidase complement(5341816..5344101) Runella slithyformis DSM 19594 10873184 YP_004658087.1 CDS Runsl_4635 NC_015703.1 5344148 5344378 R COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: lby:Lbys_2868 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; hypothetical protein complement(5344148..5344378) Runella slithyformis DSM 19594 10873185 YP_004658088.1 CDS Runsl_4636 NC_015703.1 5344512 5345231 R PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: cpi:Cpin_5597 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; LytTR family two component transcriptional regulator complement(5344512..5345231) Runella slithyformis DSM 19594 10873186 YP_004658089.1 CDS Runsl_4637 NC_015703.1 5345277 5346356 R PFAM: Histidine kinase; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119; KEGG: cpi:Cpin_6511 LysR family transcriptional regulator; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; SPTR: Transcriptional regulator, LysR family; signal transduction histidine kinase complement(5345277..5346356) Runella slithyformis DSM 19594 10873187 YP_004658090.1 CDS Runsl_4638 NC_015703.1 5346543 5347481 R PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; COGs: COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; InterPro IPR004839; KEGG: glo:Glov_2977 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Cystathionine beta-lyase; SPTR: Aminotransferase class I and II; LysR family transcriptional regulator complement(5346543..5347481) Runella slithyformis DSM 19594 10873188 YP_004658091.1 CDS Runsl_4639 NC_015703.1 5347649 5348779 R PFAM: Aminotransferase class I and II; COGs: COG0439 Biotin carboxylase; KEGG: dfe:Dfer_2846 ATP-dependent carboxylate-amine ligase domain-containing protein; SPTR: ATP-dependent carboxylate-amine ligase domain-containing protein; cystathionine beta-lyase complement(5347649..5348779) Runella slithyformis DSM 19594 10873189 YP_004658092.1 CDS Runsl_4640 NC_015703.1 5348830 5350038 R COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dfe:Dfer_2833 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; ATP-dependent carboxylate-amine ligase domain-containing protein complement(5348830..5350038) Runella slithyformis DSM 19594 10873190 YP_004658093.1 CDS Runsl_4641 NC_015703.1 5350206 5351426 D PFAM: Predicted permease; InterPro IPR019854; KEGG: dfe:Dfer_0458 motility-like protein; SPTR: Motility-like protein; TIGRFAM: Gliding motility-associated protein, GldC; hypothetical protein 5350206..5351426 Runella slithyformis DSM 19594 10873191 YP_004658094.1 CDS Runsl_4642 NC_015703.1 5351588 5351938 D TIGRFAM: gliding motility-associated protein GldC; COGs: COG0002 Acetylglutamate semialdehyde dehydrogenase; HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase; InterPro IPR000534:IPR012280:IPR000706; KEGG: dfe:Dfer_4422 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding; Semialdehyde dehydrogenase, dimerisation region; PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase; SPTR: N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; gliding motility-associated protein GldC 5351588..5351938 Runella slithyformis DSM 19594 10873192 YP_004658095.1 CDS Runsl_4643 NC_015703.1 5352001 5352978 D PFAM: Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, common form; N-acetyl-gamma-glutamyl-phosphate reductase 5352001..5352978 Runella slithyformis DSM 19594 10873193 YP_004658096.1 CDS Runsl_4644 NC_015703.1 5353012 5354109 D KEGG: rbi:RB2501_08740 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5353012..5354109 Runella slithyformis DSM 19594 10873194 YP_004658097.1 CDS Runsl_4645 NC_015703.1 5354115 5355122 R KEGG: sli:Slin_4954 TonB-dependent receptor plug; SPTR: uncharacterized protein; hypothetical protein complement(5354115..5355122) Runella slithyformis DSM 19594 10873195 YP_004658098.1 CDS Runsl_4646 NC_015703.1 5355127 5355795 R PFAM: PEGA domain; COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR009042:IPR007627:IPR007624:IPR007630:IPR 014284; KEGG: sli:Slin_1987 RNA polymerase, sigma 70 subunit, RpoD subfamily; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 3; SPTR: RNA polymerase, sigma 70 subunit, RpoD subfamily; TIGRFAM: RNA polymerase sigma-70; TonB-dependent receptor plug complement(5355127..5355795) Runella slithyformis DSM 19594 10873196 YP_004658099.1 CDS Runsl_4647 NC_015703.1 5356052 5356915 R PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); HAMAP: Polyribonucleotide nucleotidyltransferase; InterProIPR012162:IPR001247:IPR015847:IPR015848:IPR 018111:IPR003029:IPR004087; KEGG: sli:Slin_1986 polyribonucleotide nucleotidyltransferase; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; Ribosomal protein S1, RNA binding domain; PRIAM: Polyribonucleotide nucleotidyltransferase; SPTR: Polyribonucleotide nucleotidyltransferase; TIGRFAM: Polyribonucleotide nucleotidyltransferase; RpoD subfamily RNA polymerase sigma-70 subunit complement(5356052..5356915) Runella slithyformis DSM 19594 10873197 YP_004658100.1 CDS Runsl_4648 NC_015703.1 5357116 5359347 R PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease, domain 1; Polyribonucleotide nucleotidyltransferase, RNA binding domain; 3' exoribonuclease, domain 2; TIGRFAM: polyribonucleotide nucleotidyltransferase; COGs: COG0184 Ribosomal protein S15P/S13E; InterPro IPR000589:IPR005290; KEGG: chu:CHU_1787 30S ribosomal protein S15; PFAM: Ribosomal protein S15; SPTR: 30S ribosomal protein S15; TIGRFAM: Ribosomal protein S15, bacterial-type; polyribonucleotide nucleotidyltransferase complement(5357116..5359347) Runella slithyformis DSM 19594 10873198 YP_004658101.1 CDS Runsl_4649 NC_015703.1 5359577 5359846 R PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle; COGs: COG0795 permease; InterPro IPR005495; KEGG: sli:Slin_1984 permease YjgP/YjgQ family protein; PFAM: Permease YjgP/YjgQ, predicted; SPTR: Permease YjgP/YjgQ family protein; 30S ribosomal protein S15 complement(5359577..5359846) Runella slithyformis DSM 19594 10873199 YP_004658102.1 CDS Runsl_4650 NC_015703.1 5359910 5361415 R PFAM: Predicted permease YjgP/YjgQ family; KEGG: sli:Slin_1983 hypothetical protein; SPTR: uncharacterized protein; YjgP/YjgQ family permease complement(5359910..5361415) Runella slithyformis DSM 19594 10873200 YP_004658103.1 CDS Runsl_4651 NC_015703.1 5361426 5361818 R hypothetical protein complement(5361426..5361818) Runella slithyformis DSM 19594 10873201 YP_004658104.1 CDS Runsl_4653 NC_015703.1 5362640 5363986 R KEGG: dfe:Dfer_1283 conserved hypothetical signal peptide protein; SPTR: Conserved hypothetical signal peptide protein; hypothetical protein complement(5362640..5363986) Runella slithyformis DSM 19594 10873204 YP_004658105.1 CDS Runsl_4654 NC_015703.1 5364115 5364831 R COGs: COG0159 Tryptophan synthase alpha chain; HAMAP: Tryptophan synthase, alpha chain; InterPro IPR002028; KEGG: dfe:Dfer_3798 tryptophan synthase, alpha subunit; PFAM: Tryptophan synthase, alpha chain; PRIAM: Tryptophan synthase; SPTR: Tryptophan synthase alpha chain; TIGRFAM: Tryptophan synthase, alpha chain; hypothetical protein complement(5364115..5364831) Runella slithyformis DSM 19594 10873205 YP_004658106.1 CDS Runsl_4655 NC_015703.1 5364946 5365725 R PFAM: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit; COGs: COG0242 N-formylmethionyl-tRNA deformylase; HAMAP: Formylmethionine deformylase; InterPro IPR000181; KEGG: sli:Slin_1786 formylmethionine deformylase; PFAM: Formylmethionine deformylase; SPTR: Peptide deformylase 1; tryptophan synthase subunit alpha complement(5364946..5365725) Runella slithyformis DSM 19594 10873206 YP_004658107.1 CDS Runsl_4656 NC_015703.1 5365863 5366345 R PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase; InterPro IPR003088:IPR013428:IPR013427; KEGG: dfe:Dfer_3707 membrane-bound dehydrogenase domain protein; PFAM: Cytochrome c, class I; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; haem-binding region; peptide deformylase complement(5365863..5366345) Runella slithyformis DSM 19594 10873207 YP_004658108.1 CDS Runsl_4657 NC_015703.1 5366601 5369492 D PFAM: Cytochrome c; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: sli:Slin_1107 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; membrane-bound dehydrogenase domain-containing protein 5366601..5369492 Runella slithyformis DSM 19594 10873208 YP_004658109.1 CDS Runsl_4658 NC_015703.1 5369577 5370638 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: chu:CHU_1703 ferric uptake regulator protein; PFAM: Ferric-uptake regulator; SPTR: Ferric uptake regulator protein; oxidoreductase domain-containing protein complement(5369577..5370638) Runella slithyformis DSM 19594 10873209 YP_004658110.1 CDS Runsl_4659 NC_015703.1 5370900 5371379 R PFAM: Ferric uptake regulator family; Fur family ferric uptake regulator complement(5370900..5371379) Runella slithyformis DSM 19594 10873210 YP_004658111.1 CDS Runsl_4660 NC_015703.1 5371655 5371897 R COGs: COG0369 Sulfite reductase alpha subunit (flavoprotein); InterPro IPR005625:IPR008254:IPR001433; KEGG: fjo:Fjoh_4069 flavodoxin/nitric oxide synthase; PFAM: Flavodoxin/nitric oxide synthase; PepSY-associated TM helix; Oxidoreductase FAD/NAD(P)-binding; SPTR: Oxidoreductase; hypothetical protein complement(5371655..5371897) Runella slithyformis DSM 19594 10873211 YP_004658112.1 CDS Runsl_4661 NC_015703.1 5372323 5374425 R PFAM: Flavodoxin; Oxidoreductase NAD-binding domain; PepSY-associated TM helix; KEGG: coc:Coch_1987 hypothetical protein; SPTR: uncharacterized protein; flavodoxin/nitric oxide synthase complement(5372323..5374425) Runella slithyformis DSM 19594 10873212 YP_004658113.1 CDS Runsl_4662 NC_015703.1 5374431 5374925 R PFAM: Predicted periplasmic protein (DUF2271); InterPro IPR002110; KEGG: cly:Celly_2236 hypothetical protein; PFAM: Ankyrin repeat; SPTR: uncharacterized protein; hypothetical protein complement(5374431..5374925) Runella slithyformis DSM 19594 10873213 YP_004658114.1 CDS Runsl_4663 NC_015703.1 5374934 5376421 R PFAM: Ankyrin repeat; COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: zpr:ZPR_0955 thiamine biosynthesis lipoprotein; PFAM: ApbE-like lipoprotein; SPTR: Thiamine biosynthesis lipoprotein; ankyrin complement(5374934..5376421) Runella slithyformis DSM 19594 10873214 YP_004658115.1 CDS Runsl_4664 NC_015703.1 5376443 5377441 R PFAM: ApbE family; KEGG: fjo:Fjoh_4072 hypothetical protein; SPTR: Hypothetical lipoprotein; ApbE family lipoprotein complement(5376443..5377441) Runella slithyformis DSM 19594 10873215 YP_004658116.1 CDS Runsl_4665 NC_015703.1 5377586 5378614 R KEGG: dfe:Dfer_4310 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5377586..5378614) Runella slithyformis DSM 19594 10873216 YP_004658117.1 CDS Runsl_4666 NC_015703.1 5378756 5380888 R COGs: COG3182 Uncharacterized iron-regulated membrane protein; InterPro IPR005625; KEGG: dfe:Dfer_4666 propeptide PepSY amd peptidase M4; SPTR: iron-regulated transmembrane protein; hypothetical protein complement(5378756..5380888) Runella slithyformis DSM 19594 10873217 YP_004658118.1 CDS Runsl_4667 NC_015703.1 5381214 5382398 R KEGG: cly:Celly_1197 hypothetical protein; SPTR: secreted protein; propeptide PepSY amd peptidase M4 complement(5381214..5382398) Runella slithyformis DSM 19594 10873218 YP_004658119.1 CDS Runsl_4668 NC_015703.1 5382441 5383355 R COGs: COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid; InterPro IPR012910:IPR000531:IPR010105; KEGG: sli:Slin_5755 TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; hypothetical protein complement(5382441..5383355) Runella slithyformis DSM 19594 10873219 YP_004658120.1 CDS Runsl_4669 NC_015703.1 5383403 5385739 R PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: lby:Lbys_1540 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; TonB-dependent siderophore receptor complement(5383403..5385739) Runella slithyformis DSM 19594 10873220 YP_004658121.1 CDS Runsl_4670 NC_015703.1 5386454 5388412 D PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; KEGG: lby:Lbys_1541 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor 5386454..5388412 Runella slithyformis DSM 19594 10873221 YP_004658122.1 CDS Runsl_4671 NC_015703.1 5388402 5389499 D TIGRFAM: 40-residue YVTN family beta-propeller repeat; KEGG: sli:Slin_1320 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5388402..5389499 Runella slithyformis DSM 19594 10873222 YP_004658123.1 CDS Runsl_4672 NC_015703.1 5389583 5391271 R COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362:IPR017475; KEGG: shg:Sph21_1796 undecaprenyl-phosphate glucose phosphotransferase; PFAM: Bacterial sugar transferase; SPTR: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; hypothetical protein complement(5389583..5391271) Runella slithyformis DSM 19594 10873223 YP_004658124.1 CDS Runsl_4673 NC_015703.1 5391478 5392899 R PFAM: Bacterial sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: sli:Slin_6414 hypothetical protein; SPTR: uncharacterized protein; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase complement(5391478..5392899) Runella slithyformis DSM 19594 10873224 YP_004658125.1 CDS Runsl_4674 NC_015703.1 5393433 5396195 R KEGG: sli:Slin_6415 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5393433..5396195) Runella slithyformis DSM 19594 10873225 YP_004658126.1 CDS Runsl_4675 NC_015703.1 5396192 5396956 R COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: geo:Geob_2923 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucuronate 4-epimerase; SPTR: NAD-dependent epimerase/dehydratase; hypothetical protein complement(5396192..5396956) Runella slithyformis DSM 19594 10873226 YP_004658127.1 CDS Runsl_4676 NC_015703.1 5397159 5398112 R PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: cts:Ctha_1806 family 2 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; UDP-glucuronate 4-epimerase complement(5397159..5398112) Runella slithyformis DSM 19594 10873227 YP_004658128.1 CDS Runsl_4677 NC_015703.1 5398307 5399281 R PFAM: Glycosyl transferase 2; COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; KEGG: sli:Slin_6418 glycosyl transferase 39; SPTR: Glycosyl transferase 39; family 2 glycosyl transferase complement(5398307..5399281) Runella slithyformis DSM 19594 10873228 YP_004658129.1 CDS Runsl_4678 NC_015703.1 5399459 5401057 R KEGG: sli:Slin_4562 hypothetical protein; SPTR: uncharacterized protein; glycosyl transferase family protein complement(5399459..5401057) Runella slithyformis DSM 19594 10873229 YP_004658130.1 CDS Runsl_4679 NC_015703.1 5401291 5402943 R KEGG: sli:Slin_4563 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5401291..5402943) Runella slithyformis DSM 19594 10873230 YP_004658131.1 CDS Runsl_4680 NC_015703.1 5403041 5403763 R InterPro IPR018550; KEGG: sli:Slin_6416 hypothetical protein; PFAM: Lipid A 3-O-deacylase-related; SPTR: uncharacterized protein; hypothetical protein complement(5403041..5403763) Runella slithyformis DSM 19594 10873231 YP_004658132.1 CDS Runsl_4681 NC_015703.1 5403932 5405065 R PFAM: Lipid A 3-O-deacylase (PagL); KEGG: sli:Slin_6417 hypothetical protein; SPTR: uncharacterized protein; lipid A 3-O-deacylase-like protein complement(5403932..5405065) Runella slithyformis DSM 19594 10873232 YP_004658133.1 CDS Runsl_4682 NC_015703.1 5405342 5406826 D COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR005913; KEGG: dfe:Dfer_0045 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; PRIAM: dTDP-4-dehydrorhamnose reductase; SPTR: dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; hypothetical protein 5405342..5406826 Runella slithyformis DSM 19594 10873233 YP_004658134.1 CDS Runsl_4683 NC_015703.1 5406823 5407686 R PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase; COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005835:IPR005907; KEGG: lby:Lbys_1314 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Glucose-1-phosphate thymidylyltransferase; SPTR: Glucose-1-phosphate thymidylyltransferase; TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; dTDP-4-dehydrorhamnose reductase complement(5406823..5407686) Runella slithyformis DSM 19594 10873234 YP_004658135.1 CDS Runsl_4684 NC_015703.1 5407935 5408795 R PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form; COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR001509:IPR005888; KEGG: sli:Slin_5840 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: dTDP-glucose 4,6-dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; glucose-1-phosphate thymidylyltransferase complement(5407935..5408795) Runella slithyformis DSM 19594 10873235 YP_004658136.1 CDS Runsl_4685 NC_015703.1 5408894 5409952 R PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: dfe:Dfer_2965 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-glucose 4,6-dehydratase complement(5408894..5409952) Runella slithyformis DSM 19594 10873236 YP_004658137.1 CDS Runsl_4686 NC_015703.1 5409991 5410542 R PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; KEGG: nmu:Nmul_A0257 hypothetical protein; SPTR: uncharacterized protein; dTDP-4-dehydrorhamnose 3,5-epimerase complement(5409991..5410542) Runella slithyformis DSM 19594 10873237 YP_004658138.1 CDS Runsl_4687 NC_015703.1 5410583 5411440 R COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: nmu:Nmul_A0256 oxidoreductase-like; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein; hypothetical protein complement(5410583..5411440) Runella slithyformis DSM 19594 10873238 YP_004658139.1 CDS Runsl_4688 NC_015703.1 5411452 5412468 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; InterPro IPR015393:IPR001296; KEGG: sli:Slin_3145 hypothetical protein; PFAM: Protein of unknown function DUF1972; Glycosyl transferase, group 1; SPTR: uncharacterized protein; oxidoreductase domain-containing protein complement(5411452..5412468) Runella slithyformis DSM 19594 10873239 YP_004658140.1 CDS Runsl_4689 NC_015703.1 5412476 5413552 R PFAM: Glycosyl transferases group 1; Domain of unknown function (DUF1972); COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: shl:Shal_1496 group 1 glycosyl transferase; PFAM: Glycosyl transferase, group 1; SPTR: uncharacterized protein; hypothetical protein complement(5412476..5413552) Runella slithyformis DSM 19594 10873240 YP_004658141.1 CDS Runsl_4690 NC_015703.1 5413569 5414960 R PFAM: Glycosyl transferases group 1; InterPro IPR001173; KEGG: brm:Bmur_0703 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase; group 1 glycosyl transferase complement(5413569..5414960) Runella slithyformis DSM 19594 10873241 YP_004658142.1 CDS Runsl_4691 NC_015703.1 5414935 5415870 R PFAM: Glycosyl transferase 2; InterPro IPR001296; KEGG: lby:Lbys_3141 glycosyltransferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyltransferase; family 2 glycosyl transferase complement(5414935..5415870) Runella slithyformis DSM 19594 10873242 YP_004658143.1 CDS Runsl_4692 NC_015703.1 5415886 5417136 R PFAM: Glycosyl transferases group 1; InterPro IPR001173; KEGG: bth:BT_0473 glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycoside transferase 2; group 1 glycosyl transferase complement(5415886..5417136) Runella slithyformis DSM 19594 10873243 YP_004658144.1 CDS Runsl_4693 NC_015703.1 5417457 5418416 R PFAM: Glycosyl transferase 2; KEGG: tbo:Thebr_1675 hypothetical protein; SPTR: membrane protein; family 2 glycosyl transferase complement(5417457..5418416) Runella slithyformis DSM 19594 10873244 YP_004658145.1 CDS Runsl_4694 NC_015703.1 5418484 5419827 R PFAM: O-Antigen ligase; InterPro IPR002797; KEGG: shg:Sph21_1797 polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; SPTR: uncharacterized protein; hypothetical protein complement(5418484..5419827) Runella slithyformis DSM 19594 10873245 YP_004658146.1 CDS Runsl_4695 NC_015703.1 5420681 5422189 R PFAM: Polysaccharide biosynthesis protein; SPTR: uncharacterized protein; polysaccharide biosynthesis protein complement(5420681..5422189) Runella slithyformis DSM 19594 10873246 YP_004658147.1 CDS Runsl_4696 NC_015703.1 5422210 5423481 R COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: bvi:Bcep1808_0814 hexapaptide repeat-containing transferase; SPTR: Bacterial transferase, hexapeptide repeat protein; hypothetical protein complement(5422210..5423481) Runella slithyformis DSM 19594 10873247 YP_004658148.1 CDS Runsl_4697 NC_015703.1 5423513 5424097 R PFAM: Bacterial transferase hexapeptide (three repeats); hexapeptide repeat-containing transferase complement(5423513..5424097) Runella slithyformis DSM 19594 10873248 YP_004658149.1 CDS Runsl_4698 NC_015703.1 5424111 5425415 R COGs: COG2089 Sialic acid synthase; InterPro IPR013132; KEGG: hwa:HQ3519A sialic acid synthase (N-acetylneuraminate synthase) (N-acetylneuraminic acid synthase) (N-acetylneuraminate-9-phosphate synthase) (N-acetylneuraminic acid phosphate synthase); PFAM: N-acetylneuraminic acid synthase, N-terminal; PRIAM: N-acetylneuraminate synthase; SPTR: N-acylneuraminate-9-phosphate synthase; hypothetical protein complement(5424111..5425415) Runella slithyformis DSM 19594 10873249 YP_004658150.1 CDS Runsl_4699 NC_015703.1 5425498 5427069 R PFAM: NeuB family; COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase; InterPro IPR000760; KEGG: bvu:BVU_4035 inositol monophosphatase CysQ; PFAM: Inositol monophosphatase; SPTR: inositol monophosphatase CysQ; N-acetylneuraminate synthase complement(5425498..5427069) Runella slithyformis DSM 19594 10873250 YP_004658151.1 CDS Runsl_4700 NC_015703.1 5427014 5427694 R PFAM: Inositol monophosphatase; COGs: COG1083 CMP-N-acetylneuraminic acid synthetase; InterPro IPR003329; KEGG: pru:PRU_0447 hypothetical protein; PFAM: Acylneuraminate cytidylyltransferase; SPTR: Predicted protein; inositol monophosphatase complement(5427014..5427694) Runella slithyformis DSM 19594 10873251 YP_004658152.1 CDS Runsl_4701 NC_015703.1 5427698 5428363 R PFAM: Cytidylyltransferase; COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR003856:IPR005702; KEGG: sli:Slin_6307 capsular exopolysaccharide family; PFAM: Lipopolysaccharide biosynthesis; PRIAM: Non-specific protein-tyrosine kinase; SPTR: Capsular exopolysaccharide family; TIGRFAM: Exopolysaccharide synthesis protein; acylneuraminate cytidylyltransferase complement(5427698..5428363) Runella slithyformis DSM 19594 10873252 YP_004658153.1 CDS Runsl_4702 NC_015703.1 5429086 5431464 R PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family; COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715:IPR019554; KEGG: sli:Slin_6308 ligand-binding protein; PFAM: Polysaccharide export protein; Soluble ligand binding domain; SPTR: Soluble ligand binding domain protein; capsular exopolysaccharide family protein complement(5429086..5431464) Runella slithyformis DSM 19594 10873253 YP_004658154.1 CDS Runsl_4703 NC_015703.1 5431602 5432432 R PFAM: Polysaccharide biosynthesis/export protein; polysaccharide export protein complement(5431602..5432432) Runella slithyformis DSM 19594 10873254 YP_004658155.1 CDS Runsl_4704 NC_015703.1 5432476 5432625 D hypothetical protein 5432476..5432625 Runella slithyformis DSM 19594 10873255 YP_004658156.1 CDS Runsl_4705 NC_015703.1 5432795 5432944 D COGs: COG0499 S-adenosylhomocysteine hydrolase; HAMAP: Adenosylhomocysteinase; InterPro IPR000043:IPR015878; KEGG: sli:Slin_4338 adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; PRIAM: Adenosylhomocysteinase; SPTR: Adenosylhomocysteinase; TIGRFAM: S-adenosyl-L-homocysteine hydrolase; hypothetical protein 5432795..5432944 Runella slithyformis DSM 19594 10873256 YP_004658157.1 CDS Runsl_4706 NC_015703.1 5433414 5434730 R PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase; COGs: COG0192 S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthase; InterPro IPR002133; KEGG: lby:Lbys_1573 methionine adenosyltransferase; PFAM: S-adenosylmethionine synthetase; PRIAM: Methionine adenosyltransferase; SPTR: S-adenosylmethionine synthase; TIGRFAM: S-adenosylmethionine synthetase; adenosylhomocysteinase complement(5433414..5434730) Runella slithyformis DSM 19594 10873257 YP_004658158.1 CDS Runsl_4707 NC_015703.1 5435233 5436522 R PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, N-terminal domain; S-adenosylmethionine synthetase, central domain; TIGRFAM: S-adenosylmethionine synthetase; KEGG: sli:Slin_0577 hypothetical protein; SPTR: uncharacterized protein; S-adenosylmethionine synthase complement(5435233..5436522) Runella slithyformis DSM 19594 10873258 YP_004658159.1 CDS Runsl_4708 NC_015703.1 5436933 5438195 R SPTR: uncharacterized protein Lema_P075820.1; hypothetical protein complement(5436933..5438195) Runella slithyformis DSM 19594 10873259 YP_004658160.1 CDS Runsl_4709 NC_015703.1 5438243 5438845 R COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: scl:sce5208 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; hypothetical protein complement(5438243..5438845) Runella slithyformis DSM 19594 10873260 YP_004658161.1 CDS Runsl_4710 NC_015703.1 5439055 5439657 R PFAM: Protein of unknown function (DUF820); hypothetical protein complement(5439055..5439657) Runella slithyformis DSM 19594 10873261 YP_004658162.1 CDS Runsl_4711 NC_015703.1 5440219 5441601 D COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469:IPR001375; KEGG: dfe:Dfer_3655 peptidase S9B dipeptidylpeptidase IV domain protein; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; Peptidase S9, prolyl oligopeptidase, catalytic domain; PRIAM: Dipeptidyl-peptidase IV; SPTR: Peptidase S9B dipeptidylpeptidase IV domain protein; hypothetical protein 5440219..5441601 Runella slithyformis DSM 19594 10873262 YP_004658163.1 CDS Runsl_4712 NC_015703.1 5442262 5444454 R PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region; COGs: COG4783 Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: lby:Lbys_2280 peptidase M48 ste24p; PFAM: Peptidase M48, Ste24p; SPTR: Peptidase M48 Ste24p; dipeptidyl-peptidase IV complement(5442262..5444454) Runella slithyformis DSM 19594 10873263 YP_004658164.1 CDS Runsl_4713 NC_015703.1 5444481 5445266 R PFAM: Peptidase M48; Prodigal; manually curated; peptidase M48 Ste24p complement(5444481..5445266) Runella slithyformis DSM 19594 10873264 YP_004658165.1 CDS Runsl_4715 NC_015703.1 5446715 5446885 D COGs: COG0550 Topoisomerase IA; InterProIPR006171:IPR013497:IPR006154:IPR003601:IPR 003602:IPR005733; KEGG: sli:Slin_2030 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; SPTR: DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial-type; hypothetical protein 5446715..5446885 Runella slithyformis DSM 19594 10873266 YP_004658166.1 CDS Runsl_4716 NC_015703.1 5446848 5449310 D PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial; COGs: COG0412 Dienelactone hydrolase; InterPro IPR002925; KEGG: azl:AZL_021200 carboxymethylenebutenolidase; PFAM: Dienelactone hydrolase; PRIAM: Carboxymethylenebutenolidase; SPTR: Dienelactone hydrolase and related enzyme; DNA topoisomerase I 5446848..5449310 Runella slithyformis DSM 19594 10873267 YP_004658167.1 CDS Runsl_4717 NC_015703.1 5449556 5450416 D PFAM: Dienelactone hydrolase; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3278 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; carboxymethylenebutenolidase 5449556..5450416 Runella slithyformis DSM 19594 10873268 YP_004658168.1 CDS Runsl_4718 NC_015703.1 5450578 5453256 R KEGG: sli:Slin_2018 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug complement(5450578..5453256) Runella slithyformis DSM 19594 10873269 YP_004658169.1 CDS Runsl_4719 NC_015703.1 5453401 5455335 R InterPro IPR010496; KEGG: sli:Slin_1177 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; hypothetical protein complement(5453401..5455335) Runella slithyformis DSM 19594 10873270 YP_004658170.1 CDS Runsl_4720 NC_015703.1 5455637 5456281 R PFAM: Domain of Unknown Function (DUF1080); hypothetical protein complement(5455637..5456281) Runella slithyformis DSM 19594 10873271 YP_004658171.1 CDS Runsl_4721 NC_015703.1 5456458 5456592 R KEGG: sli:Slin_0230 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5456458..5456592) Runella slithyformis DSM 19594 10873272 YP_004658172.1 CDS Runsl_4722 NC_015703.1 5456611 5459478 R InterPro IPR011138; KEGG: lby:Lbys_2049 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; SPTR: Succinate dehydrogenase (Or fumarate reductase) cytochrome b subunit, b558 family; TIGRFAM: Succinate dehydrogenase, cytochrome b558 subunit; hypothetical protein complement(5456611..5459478) Runella slithyformis DSM 19594 10873273 YP_004658173.1 CDS Runsl_4723 NC_015703.1 5459792 5460577 D TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR003953:IPR004112:IPR011280; KEGG: dfe:Dfer_3970 succinate dehydrogenase flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; PRIAM: Succinate dehydrogenase; SPTR: Succinate dehydrogenase or fumarate reductase, flavoprotein subunit; TIGRFAM: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit, low-GC Gram-positive bacteria; succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family 5459792..5460577 Runella slithyformis DSM 19594 10873274 YP_004658174.1 CDS Runsl_4724 NC_015703.1 5460656 5462644 D PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup; COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterPro IPR001041:IPR004489; KEGG: phe:Phep_0212 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; PFAM: Ferredoxin; SPTR: Succinate dehydrogenase/fumarate reductase iron-sulfur; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein; succinate dehydrogenase or fumarate reductase, flavoprotein subunit 5460656..5462644 Runella slithyformis DSM 19594 10873275 YP_004658175.1 CDS Runsl_4725 NC_015703.1 5462724 5463488 D PFAM: 2Fe-2S iron-sulfur cluster binding domain; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein 5462724..5463488 Runella slithyformis DSM 19594 10873276 YP_004658176.1 CDS Runsl_4726 NC_015703.1 5463580 5463732 D hypothetical protein 5463580..5463732 Runella slithyformis DSM 19594 10873277 YP_004658177.1 CDS Runsl_4727 NC_015703.1 5464579 5464860 D KEGG: dfe:Dfer_2156 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5464579..5464860 Runella slithyformis DSM 19594 10873278 YP_004658178.1 CDS Runsl_4728 NC_015703.1 5465166 5465510 D COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: dfe:Dfer_1823 beta-Ig-H3/fasciclin; PFAM: FAS1 domain; SMART: FAS1 domain; SPTR: Beta-Ig-H3/fasciclin; hypothetical protein 5465166..5465510 Runella slithyformis DSM 19594 10873279 YP_004658179.1 CDS Runsl_4729 NC_015703.1 5465767 5466714 D PFAM: Fasciclin domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: dfe:Dfer_5311 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: two-component sensor histidine kinase transcriptional regulator; beta-Ig-H3/fasciclin 5465767..5466714 Runella slithyformis DSM 19594 10873280 YP_004658180.1 CDS Runsl_4730 NC_015703.1 5466793 5467872 D PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: mtt:Ftrac_3670 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two-component system response regulator; signal transduction histidine kinase 5466793..5467872 Runella slithyformis DSM 19594 10873281 YP_004658181.1 CDS Runsl_4731 NC_015703.1 5467881 5468645 D PFAM: Response regulator receiver domain; LytTr DNA-binding domain; KEGG: sli:Slin_5315 hypothetical protein; SPTR: uncharacterized protein; LytTR family two component transcriptional regulator 5467881..5468645 Runella slithyformis DSM 19594 10873282 YP_004658182.1 CDS Runsl_4732 NC_015703.1 5468670 5469386 D SPTR: uncharacterized protein; hypothetical protein 5468670..5469386 Runella slithyformis DSM 19594 10873283 YP_004658183.1 CDS Runsl_4733 NC_015703.1 5469448 5470203 R PFAM: Trehalose utilisation; KEGG: sur:STAUR_0232 hypothetical protein; SPTR: Uncharacterized protein; hypothetical protein complement(5469448..5470203) Runella slithyformis DSM 19594 10873284 YP_004658184.1 CDS Runsl_4734 NC_015703.1 5470240 5470962 R COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: dfe:Dfer_2640 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; hypothetical protein complement(5470240..5470962) Runella slithyformis DSM 19594 10873285 YP_004658185.1 CDS Runsl_4735 NC_015703.1 5471121 5472041 R PFAM: Xylose isomerase-like TIM barrel; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: cpi:Cpin_6533 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; xylose isomerase domain-containing protein complement(5471121..5472041) Runella slithyformis DSM 19594 10873286 YP_004658186.1 CDS Runsl_4736 NC_015703.1 5472182 5473567 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: sli:Slin_5816 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein; oxidoreductase domain-containing protein complement(5472182..5473567) Runella slithyformis DSM 19594 10873287 YP_004658187.1 CDS Runsl_4737 NC_015703.1 5473647 5474852 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG1735 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR001559; KEGG: ace:Acel_0570 aryldialkylphosphatase; PFAM: Aryldialkylphosphatase; SPTR: Aryldialkylphosphatase; oxidoreductase domain-containing protein complement(5473647..5474852) Runella slithyformis DSM 19594 10873288 YP_004658188.1 CDS Runsl_4738 NC_015703.1 5474968 5475933 R PFAM: Phosphotriesterase; InterPro IPR003953; KEGG: ace:Acel_0569 fumarate reductase/succinate dehydrogenase flavoprotein; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; SPTR: Fumarate reductase/succinate dehydrogenase flavoprotein; aryldialkylphosphatase complement(5474968..5475933) Runella slithyformis DSM 19594 10873289 YP_004658189.1 CDS Runsl_4739 NC_015703.1 5475920 5477284 R PFAM: FAD dependent oxidoreductase; COGs: COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain; KEGG: sli:Slin_2645 hypothetical protein; SPTR: uncharacterized protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein complement(5475920..5477284) Runella slithyformis DSM 19594 10873290 YP_004658190.1 CDS Runsl_4740 NC_015703.1 5477293 5478096 R COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: sli:Slin_2646 ROK family protein; PFAM: ROK; SPTR: ROK family protein; hypothetical protein complement(5477293..5478096) Runella slithyformis DSM 19594 10873291 YP_004658191.1 CDS Runsl_4741 NC_015703.1 5478143 5479036 R PFAM: ROK family; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_5818 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; ROK family protein complement(5478143..5479036) Runella slithyformis DSM 19594 10873292 YP_004658192.1 CDS Runsl_4742 NC_015703.1 5479033 5479830 R PFAM: short chain dehydrogenase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: sli:Slin_4971 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: transcriptional activator MltR; 3-oxoacyl-ACP reductase complement(5479033..5479830) Runella slithyformis DSM 19594 10873293 YP_004658193.1 CDS Runsl_4743 NC_015703.1 5479898 5480824 D PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG0383 Alpha-mannosidase; InterPro IPR011682; KEGG: bth:BT_2113 hypothetical protein; PFAM: Glycosyl hydrolases 38, C-terminal; SPTR: Glycosyl hydrolases 38-like protein; AraC family transcriptional regulator 5479898..5480824 Runella slithyformis DSM 19594 10873294 YP_004658194.1 CDS Runsl_4744 NC_015703.1 5480932 5483520 R PFAM: Glycosyl hydrolases family 38 C-terminal domain; COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; KEGG: aba:Acid345_0004 glutamine-fructose-6-phosphate transaminase (isomerizing); SPTR: Glutamine-fructose-6-phosphate transaminase (Isomerizing); glycoside hydrolase family protein complement(5480932..5483520) Runella slithyformis DSM 19594 10873295 YP_004658195.1 CDS Runsl_4745 NC_015703.1 5483624 5484541 R InterPro IPR000620; KEGG: dfe:Dfer_1709 protein of unknown function DUF6 transmembrane; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: Integral membrane protein; hypothetical protein complement(5483624..5484541) Runella slithyformis DSM 19594 10873296 YP_004658196.1 CDS Runsl_4746 NC_015703.1 5484534 5485439 R PFAM: EamA-like transporter family; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: fno:Fnod_0088 ROK family protein; PFAM: ROK; PRIAM: Glucokinase; SPTR: ROK family protein; hypothetical protein complement(5484534..5485439) Runella slithyformis DSM 19594 10873297 YP_004658197.1 CDS Runsl_4747 NC_015703.1 5485540 5486463 R PFAM: ROK family; glucokinase complement(5485540..5486463) Runella slithyformis DSM 19594 10873298 YP_004658198.1 CDS Runsl_4748 NC_015703.1 5486778 5487317 D KEGG: sli:Slin_5503 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5486778..5487317 Runella slithyformis DSM 19594 10873299 YP_004658199.1 CDS Runsl_4749 NC_015703.1 5487686 5488486 R PFAM: Domain of unknown function (DUF1083); COGs: COG2311 membrane protein; KEGG: bcb:BCB4264_A2187 hypothetical protein; SPTR: Hypothetical Membrane Spanning Protein; hypothetical protein complement(5487686..5488486) Runella slithyformis DSM 19594 10873300 YP_004658200.1 CDS Runsl_4750 NC_015703.1 5488587 5489663 R PFAM: Protein of unknown function (DUF1624); Protein of unknown function (DUF418); Prodigal; manually curated; hypothetical protein complement(5488587..5489663) Runella slithyformis DSM 19594 10873301 YP_004658201.1 CDS Runsl_4752 NC_015703.1 5490436 5491605 R KEGG: sli:Slin_2647 integral membrane protein; sugar permease; SPTR: integral membrane protein; sugar permease; ATPase AAA complement(5490436..5491605) Runella slithyformis DSM 19594 10873303 YP_004658202.1 CDS Runsl_4753 NC_015703.1 5491764 5492759 R PFAM: Fatty acid elongase 3-ketoacyl-CoA synthase 1; InterPro IPR005502; KEGG: sli:Slin_2648 ADP-ribosylation/crystallin J1; PFAM: ADP-ribosylation/Crystallin J1; SPTR: ADP-ribosylation/Crystallin J1; integral membrane protein; sugar permease complement(5491764..5492759) Runella slithyformis DSM 19594 10873304 YP_004658203.1 CDS Runsl_4754 NC_015703.1 5492831 5494378 R PFAM: ADP-ribosylglycohydrolase; COGs: COG0524 Sugar kinase ribokinase; InterPro IPR011611:IPR011877; KEGG: sli:Slin_2649 ribokinase; PFAM: Carbohydrate/purine kinase; PRIAM: Ribokinase; SPTR: Ribokinase; TIGRFAM: Ribokinase, bacterial; ADP-ribosylation/Crystallin J1 complement(5492831..5494378) Runella slithyformis DSM 19594 10873305 YP_004658204.1 CDS Runsl_4755 NC_015703.1 5494380 5495321 R PFAM: pfkB family carbohydrate kinase; TIGRFAM: ribokinase; KEGG: lby:Lbys_0370 hypothetical protein; SPTR: uncharacterized protein; ribokinase complement(5494380..5495321) Runella slithyformis DSM 19594 10873306 YP_004658205.1 CDS Runsl_4756 NC_015703.1 5495492 5496925 D manually curated; hypothetical protein 5495492..5496925 Runella slithyformis DSM 19594 10873307 YP_004658206.1 CDS Runsl_4758 NC_015703.1 5497521 5497931 R manually curated; hypothetical protein complement(5497521..5497931) Runella slithyformis DSM 19594 10873309 YP_004658207.1 CDS Runsl_4760 NC_015703.1 5498533 5499585 R InterPro IPR010496; KEGG: fbc:FB2170_00670 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; hypothetical protein complement(5498533..5499585) Runella slithyformis DSM 19594 10873311 YP_004658208.1 CDS Runsl_4761 NC_015703.1 5499811 5500536 R PFAM: Domain of Unknown Function (DUF1080); COGs: COG1414 Transcriptional regulator; InterPro IPR005471:IPR014757; KEGG: psn:Pedsa_0488 transcriptional regulator, IclR family; PFAM: Transcriptional regulator IclR, N-terminal; Transcriptional regulator IclR, C-terminal; SMART: Transcriptional regulator IclR, N-terminal; SPTR: uncharacterized protein; hypothetical protein complement(5499811..5500536) Runella slithyformis DSM 19594 10873312 YP_004658209.1 CDS Runsl_4762 NC_015703.1 5500909 5501730 R PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator; IclR family transcriptional regulator complement(5500909..5501730) Runella slithyformis DSM 19594 10873313 YP_004658210.1 CDS Runsl_4763 NC_015703.1 5501779 5501964 D COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154:IPR013149; KEGG: bcl:ABC0438 Zn-dependent alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; PRIAM: D-xylulose reductase; SPTR: Zn-dependent alcohol dehydrogenase; hypothetical protein 5501779..5501964 Runella slithyformis DSM 19594 10873314 YP_004658211.1 CDS Runsl_4764 NC_015703.1 5501982 5503001 D PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: psn:Pedsa_2182 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 2-deoxy-D-gluconate 3-dehydrogenase; SPTR: 2-deoxy-D-gluconate 3-dehydrogenase; D-xylulose reductase 5501982..5503001 Runella slithyformis DSM 19594 10873315 YP_004658212.1 CDS Runsl_4765 NC_015703.1 5503033 5503803 R PFAM: short chain dehydrogenase; TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_2262 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; 2-deoxy-D-gluconate 3-dehydrogenase complement(5503033..5503803) Runella slithyformis DSM 19594 10873316 YP_004658213.1 CDS Runsl_4766 NC_015703.1 5504090 5507101 D PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_2261 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: uncharacterized protein; TonB-dependent receptor plug 5504090..5507101 Runella slithyformis DSM 19594 10873317 YP_004658214.1 CDS Runsl_4767 NC_015703.1 5507166 5508872 D PFAM: SusD family; InterPro IPR000514; KEGG: cti:RALTA_A1239 hypothetical protein; PFAM: Glycoside hydrolase, family 39; SPTR: uncharacterized protein; RagB/SusD domain-containing protein 5507166..5508872 Runella slithyformis DSM 19594 10873318 YP_004658215.1 CDS Runsl_4768 NC_015703.1 5508997 5510457 D PFAM: Glycosyl hydrolases family 39; COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: aex:Astex_3594 glycosyl hydrolase 88; PFAM: Glycosyl hydrolase, family 88; SPTR: Unsaturated glucuronyl hydrolase involved in regulation of surface properties-like protein; glycoside hydrolase 5508997..5510457 Runella slithyformis DSM 19594 10873319 YP_004658216.1 CDS Runsl_4769 NC_015703.1 5510457 5512418 D PFAM: Glycosyl Hydrolase 88; KEGG: gpb:HDN1F_14410 hypothetical protein; SPTR: uncharacterized protein; glycoside hydrolase 5510457..5512418 Runella slithyformis DSM 19594 10873320 YP_004658217.1 CDS Runsl_4770 NC_015703.1 5512483 5513982 D PFAM: Glycosyl hydrolases family 39; KEGG: cti:RALTA_A1239 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5512483..5513982 Runella slithyformis DSM 19594 10873321 YP_004658218.1 CDS Runsl_4771 NC_015703.1 5513986 5515437 D PFAM: Glycosyl hydrolases family 39; InterPro IPR011459:IPR006626; KEGG: chu:CHU_0455 pectate lyase-like protein; PFAM: Protein of unknown function DUF1565; SPTR: Pectate lyase-related protein; hypothetical protein 5513986..5515437 Runella slithyformis DSM 19594 10873322 YP_004658219.1 CDS Runsl_4772 NC_015703.1 5515437 5517170 D TIGRFAM: parallel beta-helix repeat (two copies); COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: ddc:Dd586_3323 glycosyl hydrolase 88; PFAM: Glycosyl hydrolase, family 88; SPTR: Unsaturated glucuronyl hydrolase involved in regulation of surface properties-like protein; hypothetical protein 5515437..5517170 Runella slithyformis DSM 19594 10873323 YP_004658220.1 CDS Runsl_4773 NC_015703.1 5517176 5518681 D PFAM: Glycosyl Hydrolase 88; COGs: COG0591 Na+/proline symporter; InterPro IPR001734:IPR019900; KEGG: cpi:Cpin_3541 Na+/solute symporter; PFAM: Sodium/solute symporter; SPTR: uncharacterized protein; TIGRFAM: Sodium/solute symporter, subgroup; glycoside hydrolase 5517176..5518681 Runella slithyformis DSM 19594 10873324 YP_004658221.1 CDS Runsl_4774 NC_015703.1 5518793 5520469 D PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: cli:Clim_2374 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short chain dehydrogenase; sodium solute transporter superfamily protein 5518793..5520469 Runella slithyformis DSM 19594 10873325 YP_004658222.1 CDS Runsl_4775 NC_015703.1 5520518 5521216 D PFAM: short chain dehydrogenase; COGs: COG0684 Demethylmenaquinone methyltransferase; KEGG: caa:Caka_0515 dimethylmenaquinone methyltransferase; SPTR: Demethylmenaquinone methyltransferase-like protein; short-chain dehydrogenase/reductase SDR 5520518..5521216 Runella slithyformis DSM 19594 10873326 YP_004658223.1 CDS Runsl_4776 NC_015703.1 5521216 5521905 D PFAM: Demethylmenaquinone methyltransferase; SPTR: uncharacterized protein; dimethylmenaquinone methyltransferase 5521216..5521905 Runella slithyformis DSM 19594 10873327 YP_004658224.1 CDS Runsl_4777 NC_015703.1 5521907 5524003 D PFAM: Heparinase II/III-like protein; InterPro IPR004360; KEGG: sus:Acid_1152 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; hypothetical protein 5521907..5524003 Runella slithyformis DSM 19594 10873328 YP_004658225.1 CDS Runsl_4778 NC_015703.1 5524016 5524468 D PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154:IPR013149; KEGG: cao:Celal_2520 L-threonine 3-dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; PRIAM: L-iditol 2-dehydrogenase; SPTR: L-threonine 3-dehydrogenase; Glyoxalase/bleomycin resistance protein/dioxygenase 5524016..5524468 Runella slithyformis DSM 19594 10873329 YP_004658226.1 CDS Runsl_4779 NC_015703.1 5524545 5525558 D PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase; KEGG: cly:Celly_3120 hypothetical protein; SPTR: uncharacterized protein; L-iditol 2-dehydrogenase 5524545..5525558 Runella slithyformis DSM 19594 10873330 YP_004658227.1 CDS Runsl_4780 NC_015703.1 5525635 5526426 R COGs: COG5587 conserved hypothetical protein; InterPro IPR012808; KEGG: sli:Slin_2331 hypothetical protein; PFAM: Conserved hypothetical protein CHP02453; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02453; hypothetical protein complement(5525635..5526426) Runella slithyformis DSM 19594 10873331 YP_004658228.1 CDS Runsl_4781 NC_015703.1 5526598 5527278 R PFAM: Conserved hypothetical protein (DUF2461); TIGRFAM: TIGR02453 family protein; COGs: COG0180 Tryptophanyl-tRNA synthetase; InterPro IPR002305:IPR002306; KEGG: lby:Lbys_0317 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; PRIAM: Tryptophan--tRNA ligase; SPTR: Tryptophanyl-tRNA synthetase; TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; hypothetical protein complement(5526598..5527278) Runella slithyformis DSM 19594 10873332 YP_004658229.1 CDS Runsl_4782 NC_015703.1 5527353 5528330 D PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase; InterPro IPR000326; KEGG: sli:Slin_2918 phosphoesterase PA-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: Phosphoesterase PA-phosphatase related protein; tryptophanyl-tRNA synthetase 5527353..5528330 Runella slithyformis DSM 19594 10873333 YP_004658230.1 CDS Runsl_4783 NC_015703.1 5528371 5528946 D PFAM: PAP2 superfamily; COGs: COG0462 Phosphoribosylpyrophosphate synthetase; InterPro IPR000836:IPR005946; KEGG: dfe:Dfer_0421 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase; PRIAM: Ribose-phosphate diphosphokinase; SPTR: Ribose-phosphate pyrophosphokinase; TIGRFAM: Phosphoribosyl pyrophosphokinase; phosphoesterase PA-phosphatase-like protein 5528371..5528946 Runella slithyformis DSM 19594 10873334 YP_004658231.1 CDS Runsl_4784 NC_015703.1 5529024 5529968 D PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase; HAMAP: Ribosomal protein L25; InterPro IPR001021:IPR020055; KEGG: dfe:Dfer_0420 50S ribosomal protein L25/general stress protein Ctc; PFAM: Ribosomal protein L25, N-terminal; SPTR: 50S ribosomal protein L25; TIGRFAM: Ribosomal protein L25; ribose-phosphate pyrophosphokinase 5529024..5529968 Runella slithyformis DSM 19594 10873335 YP_004658232.1 CDS Runsl_4785 NC_015703.1 5530042 5530605 D PFAM: Ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form; COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR013766:IPR005746; KEGG: dfe:Dfer_0428 thioredoxin; PFAM: Thioredoxin domain; SPTR: Thioredoxin; TIGRFAM: Thioredoxin; 50S ribosomal protein L25 5530042..5530605 Runella slithyformis DSM 19594 10873336 YP_004658233.1 CDS Runsl_4786 NC_015703.1 5530700 5531035 R PFAM: Thioredoxin; TIGRFAM: thioredoxin; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: dsh:Dshi_0676 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: beta-lactamase; thioredoxin complement(5530700..5531035) Runella slithyformis DSM 19594 10873337 YP_004658234.1 CDS Runsl_4787 NC_015703.1 5531152 5532408 R PFAM: Beta-lactamase; COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA dimethylallyltransferase; InterPro IPR002627:IPR018022; KEGG: dfe:Dfer_0552 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: tRNA dimethylallyltransferase 1; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; beta-lactamase complement(5531152..5532408) Runella slithyformis DSM 19594 10873338 YP_004658235.1 CDS Runsl_4788 NC_015703.1 5532425 5533348 R PFAM: IPP transferase; TIGRFAM: tRNA dimethylallyltransferase; KEGG: dfe:Dfer_0551 hypothetical protein; SPTR: uncharacterized protein; tRNA dimethylallyltransferase complement(5532425..5533348) Runella slithyformis DSM 19594 10873339 YP_004658236.1 CDS Runsl_4789 NC_015703.1 5533345 5534226 R COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_5818 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; hypothetical protein complement(5533345..5534226) Runella slithyformis DSM 19594 10873340 YP_004658237.1 CDS Runsl_4790 NC_015703.1 5534349 5535161 D PFAM: short chain dehydrogenase; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: sli:Slin_2646 ROK family protein; PFAM: ROK; PRIAM: N-acylmannosamine kinase; SPTR: ROK family protein; 3-oxoacyl-ACP reductase 5534349..5535161 Runella slithyformis DSM 19594 10873341 YP_004658238.1 CDS Runsl_4791 NC_015703.1 5535164 5536057 D PFAM: ROK family; COGs: COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain; KEGG: sli:Slin_2645 hypothetical protein; SPTR: uncharacterized protein; N-acylmannosamine kinase 5535164..5536057 Runella slithyformis DSM 19594 10873342 YP_004658239.1 CDS Runsl_4792 NC_015703.1 5536095 5536907 D COGs: COG1247 Sortase and related acyltransferase; InterPro IPR000182; KEGG: bgl:bglu_2g20880 histone acetyltransferase HPA11; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase; hypothetical protein 5536095..5536907 Runella slithyformis DSM 19594 10873343 YP_004658240.1 CDS Runsl_4793 NC_015703.1 5536935 5537423 D PFAM: Acetyltransferase (GNAT) family; COGs: COG0620 Methionine synthase II (cobalamin-independent); InterPro IPR002629; KEGG: sli:Slin_5820 methionine synthase vitamin-B12 independent; PFAM: Methionine synthase, vitamin-B12 independent; SPTR: Methionine synthase vitamin-B12 independent; N-acetyltransferase GCN5 5536935..5537423 Runella slithyformis DSM 19594 10873344 YP_004658241.1 CDS Runsl_4794 NC_015703.1 5537599 5538627 D PFAM: Cobalamin-independent synthase, Catalytic domain; KEGG: sli:Slin_1321 hypothetical protein; SPTR: uncharacterized protein; vitamin-B12 independent methionine synthase 5537599..5538627 Runella slithyformis DSM 19594 10873345 YP_004658242.1 CDS Runsl_4795 NC_015703.1 5538746 5540968 R InterPro IPR011445:IPR011933; KEGG: sli:Slin_1322 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Double-transmembrane region, N-terminal; hypothetical protein complement(5538746..5540968) Runella slithyformis DSM 19594 10873346 YP_004658243.1 CDS Runsl_4796 NC_015703.1 5540965 5542185 R PFAM: Aerotolerance regulator N-terminal; TIGRFAM: N-terminal double-transmembrane domain; COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: sli:Slin_1323 hypothetical protein; PFAM: Protein of unknown function DUF58; SPTR: uncharacterized protein; double-transmembrane region domain-containing protein complement(5540965..5542185) Runella slithyformis DSM 19594 10873347 YP_004658244.1 CDS Runsl_4797 NC_015703.1 5542306 5543187 R PFAM: Protein of unknown function DUF58; Prodigal; manually curated; hypothetical protein complement(5542306..5543187) Runella slithyformis DSM 19594 10873348 YP_004658245.1 CDS Runsl_4799 NC_015703.1 5543933 5544910 R PFAM: ATPase associated with various cellular activities (AAA); KEGG: sli:Slin_1325 hypothetical protein; SPTR: uncharacterized protein; ATPase complement(5543933..5544910) Runella slithyformis DSM 19594 10873350 YP_004658246.1 CDS Runsl_4800 NC_015703.1 5544914 5545549 R manually curated; hypothetical protein complement(5544914..5545549) Runella slithyformis DSM 19594 10873351 YP_004658247.1 CDS Runsl_4802 NC_015703.1 5545848 5547209 R PFAM: modulator of DNA gyrase; COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510:IPR006311; KEGG: lby:Lbys_3468 peptidase U62 modulator of DNA gyrase; PFAM: Peptidase U62, modulator of DNA gyrase; SPTR: Peptidase U62 modulator of DNA gyrase; peptidase U62 complement(5545848..5547209) Runella slithyformis DSM 19594 10873353 YP_004658248.1 CDS Runsl_4803 NC_015703.1 5547229 5548875 R PFAM: modulator of DNA gyrase; COGs: COG2068 Uncharacterized MobA-related protein; InterPro IPR001228; KEGG: sli:Slin_1745 hypothetical protein; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: uncharacterized protein; peptidase U62 complement(5547229..5548875) Runella slithyformis DSM 19594 10873354 YP_004658249.1 CDS Runsl_4804 NC_015703.1 5549039 5549629 R PFAM: Uncharacterized protein family UPF0007; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase complement(5549039..5549629) Runella slithyformis DSM 19594 10873355 YP_004658252.1 CDS Runsl_4807 NC_015703.1 5550735 5553020 D PFAM: OmpA family; PPIC-type PPIASE domain; InterPro IPR015391:IPR000297; KEGG: sli:Slin_0806 PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SurA N-terminal; SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 5550735..5553020 Runella slithyformis DSM 19594 10873358 YP_004658253.1 CDS Runsl_4808 NC_015703.1 5553078 5554472 D PFAM: SurA N-terminal domain; PPIC-type PPIASE domain; COGs: COG0714 MoxR-like ATPase; InterPro IPR011703; KEGG: sli:Slin_0805 ATPase AAA; PFAM: ATPase associated with various cellular activities, AAA-3; SPTR: ATPase associated with various cellular activities AAA_3; PpiC-type peptidyl-prolyl cis-trans isomerase 5553078..5554472 Runella slithyformis DSM 19594 10873359 YP_004658254.1 CDS Runsl_4809 NC_015703.1 5554547 5555509 D PFAM: ATPase associated with various cellular activities (AAA); COGs: COG0281 Malic enzyme; InterPro IPR012301:IPR012302:IPR002505; KEGG: dfe:Dfer_0248 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))., phosphate acetyltransferase; PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; Phosphate acetyl/butaryl transferase; SPTR: Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP(+))., Phosphate acetyltransferase; ATPase 5554547..5555509 Runella slithyformis DSM 19594 10873360 YP_004658255.1 CDS Runsl_4810 NC_015703.1 5555770 5558040 D PFAM: Phosphate acetyl/butaryl transferase; Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain; TIGRFAM: phosphate acetyltransferase; COGs: COG0196 FAD synthase; InterPro IPR015864:IPR015865:IPR002606; KEGG: dfe:Dfer_1247 riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; PRIAM: FAD synthetase., Riboflavin kinase; SPTR: Riboflavin biosynthesis protein RibF; TIGRFAM: Riboflavin kinase/FAD synthetase; malic protein NAD-binding protein 5555770..5558040 Runella slithyformis DSM 19594 10873361 YP_004658258.1 CDS Runsl_4813 NC_015703.1 5559765 5560559 R PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP; KEGG: sli:Slin_0787 hypothetical protein; SPTR: uncharacterized protein; UDP-diphosphatase complement(5559765..5560559) Runella slithyformis DSM 19594 10873364 YP_004658259.1 CDS Runsl_4814 NC_015703.1 5560623 5560835 R PFAM: Protein of unknown function (DUF3098); COGs: COG2177 Cell division protein; InterPro IPR003838; KEGG: dfe:Dfer_1243 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein complement(5560623..5560835) Runella slithyformis DSM 19594 10873365 YP_004658260.1 CDS Runsl_4815 NC_015703.1 5560877 5561758 R PFAM: Predicted permease; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076:IPR000172; KEGG: sli:Slin_5806 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; hypothetical protein complement(5560877..5561758) Runella slithyformis DSM 19594 10873366 YP_004658261.1 CDS Runsl_4816 NC_015703.1 5561992 5563704 R PFAM: GMC oxidoreductase; KEGG: sli:Slin_5805 hypothetical protein; SPTR: uncharacterized protein; glucose-methanol-choline oxidoreductase complement(5561992..5563704) Runella slithyformis DSM 19594 10873367 YP_004658262.1 CDS Runsl_4817 NC_015703.1 5563736 5564266 R COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: sli:Slin_1591 glucose/sorbosone dehydrogenase; SPTR: Glucose/sorbosone dehydrogenase-like protein; hypothetical protein complement(5563736..5564266) Runella slithyformis DSM 19594 10873368 YP_004658263.1 CDS Runsl_4818 NC_015703.1 5564470 5565690 D PFAM: Glucose / Sorbosone dehydrogenase; InterPro IPR002059:IPR011129; KEGG: sli:Slin_4054 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding domain protein; glucose/sorbosone dehydrogenase 5564470..5565690 Runella slithyformis DSM 19594 10873369 YP_004658264.1 CDS Runsl_4819 NC_015703.1 5566015 5566464 D PFAM: 'Cold-shock' DNA-binding domain; cold-shock protein 5566015..5566464 Runella slithyformis DSM 19594 10873370 YP_004658265.1 CDS Runsl_4820 NC_015703.1 5567173 5567445 R COGs: COG1896 hydrolase of HD superfamily; InterPro IPR006674; KEGG: cpi:Cpin_3043 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SPTR: Metal dependent phosphohydrolase; hypothetical protein complement(5567173..5567445) Runella slithyformis DSM 19594 10873371 YP_004658266.1 CDS Runsl_4821 NC_015703.1 5568641 5569174 D KEGG: sli:Slin_2213 hypothetical protein; SPTR: uncharacterized protein; metal dependent phosphohydrolase 5568641..5569174 Runella slithyformis DSM 19594 10873372 YP_004658267.1 CDS Runsl_4822 NC_015703.1 5569282 5569620 D PFAM: Protein of unknown function (DUF2568); KEGG: dfe:Dfer_4107 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5569282..5569620 Runella slithyformis DSM 19594 10873373 YP_004658268.1 CDS Runsl_4823 NC_015703.1 5569678 5570028 D KEGG: sli:Slin_3515 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5569678..5570028 Runella slithyformis DSM 19594 10873374 YP_004658269.1 CDS Runsl_4824 NC_015703.1 5570054 5570437 R PFAM: Protein of unknown function (DUF3037); KEGG: cpi:Cpin_6310 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5570054..5570437) Runella slithyformis DSM 19594 10873375 YP_004658270.1 CDS Runsl_4825 NC_015703.1 5570415 5571212 R InterPro IPR001440:IPR019734; KEGG: sli:Slin_1363 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: TPR repeat-containing protein; hypothetical protein complement(5570415..5571212) Runella slithyformis DSM 19594 10873376 YP_004658271.1 CDS Runsl_4826 NC_015703.1 5571463 5571939 D KEGG: sli:Slin_5342 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5571463..5571939 Runella slithyformis DSM 19594 10873377 YP_004658272.1 CDS Runsl_4827 NC_015703.1 5571944 5573227 R hypothetical protein complement(5571944..5573227) Runella slithyformis DSM 19594 10873378 YP_004658273.1 CDS Runsl_4828 NC_015703.1 5573294 5573545 D hypothetical protein 5573294..5573545 Runella slithyformis DSM 19594 10873379 YP_004658274.1 CDS Runsl_4829 NC_015703.1 5573435 5573989 R manually curated; hypothetical protein complement(5573435..5573989) Runella slithyformis DSM 19594 10873380 YP_004658275.1 CDS Runsl_4831 NC_015703.1 5574412 5574612 R COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: reh:H16_B0832 2-phosphonopropionate transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Phosphonate metabolism protein PhnB; hypothetical protein complement(5574412..5574612) Runella slithyformis DSM 19594 10873382 YP_004658276.1 CDS Runsl_4832 NC_015703.1 5574614 5575882 R PFAM: Major Facilitator Superfamily; COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154:IPR013149; KEGG: psl:Psta_3166 phosphonate catabolism associated alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; SPTR: Alcohol dehydrogenase; manually curated; major facilitator superfamily protein complement(5574614..5575882) Runella slithyformis DSM 19594 10873383 YP_004658277.1 CDS Runsl_4833 NC_015703.1 5575897 5576991 R PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: phosphonate catabolism associated alcohol dehydrogenase; COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: dfe:Dfer_3144 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family; alcohol dehydrogenase complement(5575897..5576991) Runella slithyformis DSM 19594 10873384 YP_004658278.1 CDS Runsl_4834 NC_015703.1 5577197 5577880 R PFAM: GDSL-like Lipase/Acylhydrolase; COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR007527:IPR000330:IPR001650:IPR014001; KEGG: dfe:Dfer_3874 non-specific serine/threonine protein kinase; PFAM: SNF2-related; Zinc finger, SWIM-type; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Non-specific serine/threonine protein kinase; G-D-S-L family lipolytic protein complement(5577197..5577880) Runella slithyformis DSM 19594 10873385 YP_004658279.1 CDS Runsl_4835 NC_015703.1 5578021 5581875 R PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain; SWIM zinc finger; SNF2-like protein complement(5578021..5581875) Runella slithyformis DSM 19594 10873386 YP_004658280.1 CDS Runsl_4836 NC_015703.1 5581959 5582258 R KEGG: sli:Slin_2429 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5581959..5582258) Runella slithyformis DSM 19594 10873387 YP_004658281.1 CDS Runsl_4837 NC_015703.1 5582371 5583216 D InterPro IPR010496; KEGG: dfe:Dfer_1970 protein of unknown function DUF1080; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; hypothetical protein 5582371..5583216 Runella slithyformis DSM 19594 10873388 YP_004658282.1 CDS Runsl_4838 NC_015703.1 5583337 5584116 R PFAM: Domain of Unknown Function (DUF1080); KEGG: amd:AMED_6200 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5583337..5584116) Runella slithyformis DSM 19594 10873389 YP_004658283.1 CDS Runsl_4839 NC_015703.1 5584181 5585077 R KEGG: dfe:Dfer_5392 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5584181..5585077) Runella slithyformis DSM 19594 10873390 YP_004658284.1 CDS Runsl_4840 NC_015703.1 5585249 5586037 R PFAM: Uncharacterized protein conserved in bacteria (DUF2236); KEGG: psn:Pedsa_0396 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5585249..5586037) Runella slithyformis DSM 19594 10873391 YP_004658285.1 CDS Runsl_4841 NC_015703.1 5586022 5586411 R PFAM: Protein of unknown function (DUF2809); COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_2699 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; hypothetical protein complement(5586022..5586411) Runella slithyformis DSM 19594 10873392 YP_004658286.1 CDS Runsl_4842 NC_015703.1 5586690 5589128 R COGs: COG2860 membrane protein; InterPro IPR005115; KEGG: lbf:LBF_2554 hypothetical protein; PFAM: Uncharacterised protein family UPF0126; SPTR: uncharacterized protein; TonB-dependent receptor complement(5586690..5589128) Runella slithyformis DSM 19594 10873393 YP_004658287.1 CDS Runsl_4843 NC_015703.1 5589469 5590080 D PFAM: UPF0126 domain; COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: ppn:Palpr_0120 bile acid:sodium symporter; PFAM: Bile acid:sodium symporter; SPTR: Bile acid:sodium symporter; hypothetical protein 5589469..5590080 Runella slithyformis DSM 19594 10873394 YP_004658288.1 CDS Runsl_4844 NC_015703.1 5590101 5591039 D PFAM: Sodium Bile acid symporter family; COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: mtt:Ftrac_2184 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; bile acid:sodium symporter 5590101..5591039 Runella slithyformis DSM 19594 10873395 YP_004658289.1 CDS Runsl_4845 NC_015703.1 5591259 5592482 D PFAM: Acyltransferase; Prodigal; manually curated; phospholipid/glycerol acyltransferase 5591259..5592482 Runella slithyformis DSM 19594 10873396 YP_004658290.1 CDS Runsl_4847 NC_015703.1 5593586 5594422 D PFAM: FdhD/NarQ family; TIGRFAM: formate dehydrogenase accessory protein FdhD; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_5310 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: uncharacterized protein; protein fdhD 5593586..5594422 Runella slithyformis DSM 19594 10873398 YP_004658291.1 CDS Runsl_4848 NC_015703.1 5594561 5596954 D PFAM: TonB-dependent Receptor Plug Domain; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR008030; KEGG: lth:KLTH0E10032g KLTH0E10032p; SPTR: KLTH0E10032p; TonB-dependent receptor 5594561..5596954 Runella slithyformis DSM 19594 10873399 YP_004658292.1 CDS Runsl_4849 NC_015703.1 5597031 5597921 D PFAM: NmrA-like family; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: dfe:Dfer_5311 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; hypothetical protein 5597031..5597921 Runella slithyformis DSM 19594 10873400 YP_004658293.1 CDS Runsl_4850 NC_015703.1 5597937 5598956 D PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_5312 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; signal transduction histidine kinase 5597937..5598956 Runella slithyformis DSM 19594 10873401 YP_004658294.1 CDS Runsl_4851 NC_015703.1 5598953 5599720 D PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060; KEGG: ral:Rumal_2538 AraC family transcriptional regulator; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; LytTR family two component transcriptional regulator 5598953..5599720 Runella slithyformis DSM 19594 10873402 YP_004658295.1 CDS Runsl_4852 NC_015703.1 5600018 5600638 R PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: sli:Slin_0986 hypothetical protein; SPTR: uncharacterized protein; AraC family transcriptional regulator complement(5600018..5600638) Runella slithyformis DSM 19594 10873403 YP_004658296.1 CDS Runsl_4853 NC_015703.1 5601135 5601836 R COGs: COG0234 Co-chaperonin GroES (HSP10); HAMAP: Chaperonin Cpn10, subgroup; InterPro IPR001476:IPR020818; KEGG: lby:Lbys_1302 chaperonin cpn10; PFAM: Chaperonin Cpn10; SPTR: 10 kDa chaperonin; hypothetical protein complement(5601135..5601836) Runella slithyformis DSM 19594 10873404 YP_004658297.1 CDS Runsl_4854 NC_015703.1 5602166 5602456 D PFAM: Chaperonin 10 Kd subunit; COGs: COG0459 Chaperonin GroEL (HSP60 family); HAMAP: 60 kDa chaperonin; InterPro IPR002423:IPR001844; KEGG: sli:Slin_0984 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1; SPTR: 60 kDa chaperonin; TIGRFAM: Chaperonin Cpn60; molecular chaperone GroES 5602166..5602456 Runella slithyformis DSM 19594 10873405 YP_004658298.1 CDS Runsl_4855 NC_015703.1 5602567 5604210 D PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL; COGs: COG0466 ATP-dependent Lon protease; InterProIPR003111:IPR003959:IPR008269:IPR003593:IPR 004815; KEGG: dfe:Dfer_4129 ATP-dependent protease La; PFAM: Peptidase S16, lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core; PRIAM: Endopeptidase La; SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; SPTR: ATP-dependent protease La; TIGRFAM: Peptidase S16, ATP-dependent protease La; molecular chaperone GroEL 5602567..5604210 Runella slithyformis DSM 19594 10873406 YP_004658299.1 CDS Runsl_4856 NC_015703.1 5604706 5607201 D PFAM: ATP-dependent protease La (LON) domain; ATPase associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: dfe:Dfer_2723 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Aspartate transaminase; SPTR: Aminotransferase class I and II; anti-sigma H sporulation factor LonB 5604706..5607201 Runella slithyformis DSM 19594 10873407 YP_004658300.1 CDS Runsl_4857 NC_015703.1 5607293 5608537 R PFAM: Aminotransferase class I and II; KEGG: dfe:Dfer_4253 hypothetical protein; SPTR: uncharacterized protein; aspartate transaminase complement(5607293..5608537) Runella slithyformis DSM 19594 10873408 YP_004658301.1 CDS Runsl_4858 NC_015703.1 5608618 5609355 R KEGG: dfe:Dfer_2593 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5608618..5609355) Runella slithyformis DSM 19594 10873409 YP_004658302.1 CDS Runsl_4859 NC_015703.1 5609508 5610530 D COGs: COG2715 Uncharacterized membrane protein required for spore maturation in B.subtilis.; InterPro IPR011642; KEGG: sli:Slin_4460 nucleoside recognition domain protein; PFAM: Nucleoside recognition; SPTR: Nucleoside recognition domain protein; hypothetical protein 5609508..5610530 Runella slithyformis DSM 19594 10873410 YP_004658303.1 CDS Runsl_4860 NC_015703.1 5610643 5611878 D PFAM: Nucleoside recognition; COGs: COG0698 Ribose 5-phosphate isomerase RpiB; InterPro IPR003500:IPR004785; KEGG: dfe:Dfer_4874 sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; PRIAM: Ribose-5-phosphate isomerase; SPTR: Sugar-phosphate isomerase, RpiB/LacA/LacB family; TIGRFAM: Ribose/galactose isomerase; Ribose 5-phosphate isomerase B; nucleoside recognition domain-containing protein 5610643..5611878 Runella slithyformis DSM 19594 10873411 YP_004658304.1 CDS Runsl_4861 NC_015703.1 5611875 5612309 R PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family; COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: dfe:Dfer_4873 hypothetical protein; PFAM: Conserved hypothetical protein CHP00730; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00730; RpiB/LacA/LacB family sugar-phosphate isomerase complement(5611875..5612309) Runella slithyformis DSM 19594 10873412 YP_004658305.1 CDS Runsl_4862 NC_015703.1 5612476 5613201 D PFAM: Possible lysine decarboxylase; TIGRFAM: TIGR00725 family protein; TIGR00730 family protein; InterPro IPR011576; KEGG: npu:Npun_R6336 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; SPTR: Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein; hypothetical protein 5612476..5613201 Runella slithyformis DSM 19594 10873413 YP_004658306.1 CDS Runsl_4863 NC_015703.1 5613324 5613881 D PFAM: Pyridoxamine 5'-phosphate oxidase; SPTR: Transposase IS4 family protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 5613324..5613881 Runella slithyformis DSM 19594 10873414 YP_004658307.1 CDS Runsl_4864 NC_015703.1 5613988 5615334 D COGs: COG2272 Carboxylesterase type B; InterPro IPR002018:IPR006311; KEGG: sli:Slin_4016 carboxylesterase type B; PFAM: Carboxylesterase, type B; SPTR: Carboxylesterase type B; hypothetical protein 5613988..5615334 Runella slithyformis DSM 19594 10873415 YP_004658308.1 CDS Runsl_4865 NC_015703.1 5615398 5617050 R PFAM: Carboxylesterase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; KEGG: sli:Slin_5108 hypothetical protein; SPTR: uncharacterized protein; carboxylesterase type B complement(5615398..5617050) Runella slithyformis DSM 19594 10873416 YP_004658309.1 CDS Runsl_4866 NC_015703.1 5617226 5618407 D COGs: COG4628 conserved hypothetical protein; InterPro IPR018668; KEGG: eta:ETA_07750 hypothetical protein; PFAM: Protein of unknown function DUF2132; SPTR: uncharacterized protein; hypothetical protein 5617226..5618407 Runella slithyformis DSM 19594 10873417 YP_004658310.1 CDS Runsl_4867 NC_015703.1 5618408 5618827 R PFAM: Uncharacterized conserved protein (DUF2132); COGs: COG1785 Alkaline phosphatase; InterPro IPR004129:IPR001952; KEGG: cpi:Cpin_0006 alkaline phosphatase; PFAM: Alkaline phosphatase; Glycerophosphoryl diester phosphodiesterase; SMART: Alkaline phosphatase; SPTR: Alkaline phosphatase; hypothetical protein complement(5618408..5618827) Runella slithyformis DSM 19594 10873418 YP_004658311.1 CDS Runsl_4868 NC_015703.1 5619006 5620841 D PFAM: Alkaline phosphatase; KEGG: dfe:Dfer_5078 hypothetical protein; SPTR: uncharacterized protein; alkaline phosphatase 5619006..5620841 Runella slithyformis DSM 19594 10873419 YP_004658312.1 CDS Runsl_4869 NC_015703.1 5620847 5621140 R TIGRFAM: integral membrane protein; COGs: COG1929 Glycerate kinase; InterPro IPR004381; KEGG: sli:Slin_1926 glycerate kinase; PFAM: Glycerate kinase; PRIAM: Glycerate kinase; SPTR: Glycerate kinase; TIGRFAM: Glycerate kinase; hypothetical protein complement(5620847..5621140) Runella slithyformis DSM 19594 10873420 YP_004658313.1 CDS Runsl_4870 NC_015703.1 5621137 5622276 R PFAM: Glycerate kinase; TIGRFAM: glycerate kinase; COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR001264:IPR001460; KEGG: dfe:Dfer_5029 glycosyl transferase 51; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Glycosyl transferase 51; glycerate kinase complement(5621137..5622276) Runella slithyformis DSM 19594 10873421 YP_004658314.1 CDS Runsl_4871 NC_015703.1 5622363 5624690 R PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; InterPro IPR019734; KEGG: dfe:Dfer_5028 TPR repeat-containing protein; SPTR: TPR repeat-containing protein; peptidoglycan glycosyltransferase complement(5622363..5624690) Runella slithyformis DSM 19594 10873422 YP_004658315.1 CDS Runsl_4872 NC_015703.1 5624877 5627102 R InterPro IPR013216; KEGG: gau:GAU_3119 methyltransferase; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; hypothetical protein complement(5624877..5627102) Runella slithyformis DSM 19594 10873423 YP_004658316.1 CDS Runsl_4873 NC_015703.1 5627462 5628052 D PFAM: Methyltransferase domain; KEGG: sli:Slin_1752 hypothetical protein; SPTR: uncharacterized protein; type 11 methyltransferase 5627462..5628052 Runella slithyformis DSM 19594 10873424 YP_004658317.1 CDS Runsl_4874 NC_015703.1 5628274 5628708 D PFAM: Protein of unknown function (DUF2452); manually curated; hypothetical protein 5628274..5628708 Runella slithyformis DSM 19594 10873425 YP_004658318.1 CDS Runsl_4876 NC_015703.1 5629050 5629157 R KEGG: dfe:Dfer_2647 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5629050..5629157) Runella slithyformis DSM 19594 10873427 YP_004658319.1 CDS Runsl_4877 NC_015703.1 5629227 5631974 D KEGG: dfe:Dfer_2626 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5629227..5631974 Runella slithyformis DSM 19594 10873428 YP_004658320.1 CDS Runsl_4878 NC_015703.1 5632273 5632740 R KEGG: dfe:Dfer_2628 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5632273..5632740) Runella slithyformis DSM 19594 10873429 YP_004658321.1 CDS Runsl_4879 NC_015703.1 5632820 5633914 R COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839; KEGG: dfe:Dfer_2627 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Histidinol-phosphate transaminase; SPTR: Aminotransferase class I and II; hypothetical protein complement(5632820..5633914) Runella slithyformis DSM 19594 10873430 YP_004658322.1 CDS Runsl_4880 NC_015703.1 5634004 5635185 R PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; KEGG: dfe:Dfer_2625 hypothetical protein; SPTR: uncharacterized protein; histidinol-phosphate transaminase complement(5634004..5635185) Runella slithyformis DSM 19594 10873431 YP_004658323.1 CDS Runsl_4881 NC_015703.1 5635241 5636698 R COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_2624 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein complement(5635241..5636698) Runella slithyformis DSM 19594 10873432 YP_004658324.1 CDS Runsl_4882 NC_015703.1 5636769 5639930 R PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839:IPR006311; KEGG: sli:Slin_3478 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Histidinol-phosphate transaminase; SPTR: Aminotransferase class I and II; TonB-dependent receptor plug complement(5636769..5639930) Runella slithyformis DSM 19594 10873433 YP_004658325.1 CDS Runsl_4883 NC_015703.1 5640794 5641975 D PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; KEGG: sli:Slin_6127 Hedgehog/intein hint domain protein; SPTR: Hedgehog/intein hint domain protein; histidinol-phosphate transaminase 5640794..5641975 Runella slithyformis DSM 19594 10873434 YP_004658326.1 CDS Runsl_4884 NC_015703.1 5641986 5642915 D InterPro IPR000297; KEGG: dfe:Dfer_4724 PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase; hypothetical protein 5641986..5642915 Runella slithyformis DSM 19594 10873435 YP_004658327.1 CDS Runsl_4885 NC_015703.1 5643218 5645329 R PFAM: PPIC-type PPIASE domain; InterPro IPR005181; KEGG: sli:Slin_5096 hypothetical protein; PFAM: Protein of unknown function DUF303, acetylesterase SPTR: uncharacterized protein; PpiC-type peptidyl-prolyl cis-trans isomerase complement(5643218..5645329) Runella slithyformis DSM 19594 10873436 YP_004658328.1 CDS Runsl_4886 NC_015703.1 5645486 5647978 R PFAM: Domain of unknown function (DUF303); KEGG: mba:Mbar_A0126 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5645486..5647978) Runella slithyformis DSM 19594 10873437 YP_004658329.1 CDS Runsl_4887 NC_015703.1 5648400 5649176 R COGs: COG4242 Cyanophycinase and related exopeptidase; KEGG: sli:Slin_4208 cyanophycinase-like protein; SPTR: Cyanophycinase-like protein; hypothetical protein complement(5648400..5649176) Runella slithyformis DSM 19594 10873438 YP_004658330.1 CDS Runsl_4888 NC_015703.1 5649260 5650273 R PFAM: Peptidase S51; TIGRFAM: cyanophycinase; COGs: COG1864 DNA/RNA endonuclease G NUC1; InterPro IPR001604:IPR020821; KEGG: ava:Ava_B0336 DNA/RNA non-specific endonuclease; PFAM: DNA/RNA non-specific endonuclease; SMART: Extracellular Endonuclease, subunit A; SPTR: DNA/RNA non-specific endonuclease; cyanophycinase complement(5649260..5650273) Runella slithyformis DSM 19594 10873439 YP_004658331.1 CDS Runsl_4889 NC_015703.1 5650423 5651397 D PFAM: DNA/RNA non-specific endonuclease; COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: dfe:Dfer_1262 protein of unknown function UPF0047; PFAM: Uncharacterised protein family UPF0047; SPTR: uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0047; DNA/RNA non-specific endonuclease 5650423..5651397 Runella slithyformis DSM 19594 10873440 YP_004658332.1 CDS Runsl_4890 NC_015703.1 5651414 5651836 R PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme; KEGG: dmr:Deima_1581 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5651414..5651836) Runella slithyformis DSM 19594 10873441 YP_004658333.1 CDS Runsl_4891 NC_015703.1 5652271 5652639 D hypothetical protein 5652271..5652639 Runella slithyformis DSM 19594 10873442 YP_004658334.1 CDS Runsl_4892 NC_015703.1 5652953 5653456 R InterPro IPR001387; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; hypothetical protein complement(5652953..5653456) Runella slithyformis DSM 19594 10873443 YP_004658335.1 CDS Runsl_4893 NC_015703.1 5653596 5653790 R PFAM: Helix-turn-helix; KEGG: sli:Slin_3285 hypothetical protein; SPTR: uncharacterized protein; helix-turn-helix domain-containing protein complement(5653596..5653790) Runella slithyformis DSM 19594 10873444 YP_004658336.1 CDS Runsl_4894 NC_015703.1 5654018 5654257 R KEGG: sli:Slin_3094 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5654018..5654257) Runella slithyformis DSM 19594 10873445 YP_004658337.1 CDS Runsl_4895 NC_015703.1 5654323 5655471 R COGs: COG3378 ATPase; InterPro IPR014818:IPR006500; KEGG: sli:Slin_3095 P4 family phage/plasmid primase; PFAM: Phage/plasmid primase, P4, C-terminal; SPTR: Phage/plasmid primase, P4 family; TIGRFAM: DNA primase, phage/plasmid; hypothetical protein complement(5654323..5655471) Runella slithyformis DSM 19594 10873446 YP_004658338.1 CDS Runsl_4896 NC_015703.1 5655640 5657223 R PFAM: D5 N terminal like; TIGRFAM: phage/plasmid primase, P4 family, C-terminal domain; phage/plasmid primase, P4 family complement(5655640..5657223) Runella slithyformis DSM 19594 10873447 YP_004658339.1 CDS Runsl_4897 NC_015703.1 5657482 5657682 R KEGG: cat:CA2559_03950 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5657482..5657682) Runella slithyformis DSM 19594 10873448 YP_004658340.1 CDS Runsl_4898 NC_015703.1 5657672 5658025 R KEGG: sli:Slin_3282 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5657672..5658025) Runella slithyformis DSM 19594 10873449 YP_004658341.1 CDS Runsl_4899 NC_015703.1 5658154 5659518 R COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: sli:Slin_3281 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Mobilizable transposon, int protein; hypothetical protein complement(5658154..5659518) Runella slithyformis DSM 19594 10873450 YP_004658342.1 CDS Runsl_4900 NC_015703.1 5659534 5660676 R PFAM: Phage integrase; InterPro IPR010093; KEGG: pdi:BDI_2123 transposase in mobilizable transposon, TnpA protein; SPTR: Transposase in mobilizable transposon, tnpA protein; TIGRFAM: Excisionase/Xis, DNA-binding; integrase complement(5659534..5660676) Runella slithyformis DSM 19594 10873451 YP_004658343.1 CDS Runsl_4901 NC_015703.1 5660697 5661428 R TIGRFAM: DNA binding domain, excisionase; COGs: COG0486 GTPase; HAMAP: tRNA modification GTPase TrmE; InterPro IPR004520:IPR018948:IPR002917:IPR005225; KEGG: dfe:Dfer_0089 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related; SPTR: tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; excisionase complement(5660697..5661428) Runella slithyformis DSM 19594 10873452 YP_004658344.1 CDS Runsl_4902 NC_015703.1 5661663 5662988 R PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: small GTP-binding protein domain; tRNA modification GTPase TrmE; KEGG: lby:Lbys_2700 hypothetical protein; SPTR: uncharacterized protein; tRNA modification GTPase mnmE complement(5661663..5662988) Runella slithyformis DSM 19594 10873453 YP_004658345.1 CDS Runsl_4903 NC_015703.1 5662991 5663194 R KEGG: sli:Slin_1630 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5662991..5663194) Runella slithyformis DSM 19594 10873454 YP_004658346.1 CDS Runsl_4904 NC_015703.1 5663283 5664041 R KEGG: dfe:Dfer_0082 LVIVD repeat protein; SPTR: LVIVD repeat protein; hypothetical protein complement(5663283..5664041) Runella slithyformis DSM 19594 10873455 YP_004658347.1 CDS Runsl_4905 NC_015703.1 5664038 5664799 R KEGG: dfe:Dfer_0081 LVIVD repeat protein; SPTR: LVIVD repeat protein; LVIVD repeat-containing protein complement(5664038..5664799) Runella slithyformis DSM 19594 10873456 YP_004658348.1 CDS Runsl_4906 NC_015703.1 5664805 5665350 R InterPro IPR004843; KEGG: dfe:Dfer_4802 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; LVIVD repeat-containing protein complement(5664805..5665350) Runella slithyformis DSM 19594 10873457 YP_004658349.1 CDS Runsl_4907 NC_015703.1 5665390 5666619 R COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_2542 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein; manually curated; metallophosphoesterase complement(5665390..5666619) Runella slithyformis DSM 19594 10873458 YP_004658350.1 CDS Runsl_4908 NC_015703.1 5666667 5668691 R PFAM: WD40-like Beta Propeller Repeat; OmpA family; KEGG: rhi:NGR_b13550 hypothetical protein; SPTR: uncharacterized protein; manually curated; OmpA/MotB domain-containing protein complement(5666667..5668691) Runella slithyformis DSM 19594 10873459 YP_004658351.1 CDS Runsl_4909 NC_015703.1 5668815 5670182 R COGs: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase beta subunit; InterPro IPR011766; KEGG: gpb:HDN1F_09560 2-ketoglutarate: NADP oxidoreductase, beta subunit; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: 2-oxoglutarate synthase; SPTR: 2-ketoglutarate: NADP oxidoreductase, beta subunit; hypothetical protein complement(5668815..5670182) Runella slithyformis DSM 19594 10873460 YP_004658352.1 CDS Runsl_4910 NC_015703.1 5670415 5671467 R PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: cch:Cag_1441 hypothetical protein; PFAM: Filamentation induced by cAMP/death on curing, related; SPTR: uncharacterized protein; 2-oxoglutarate synthase complement(5670415..5671467) Runella slithyformis DSM 19594 10873461 YP_004658353.1 CDS Runsl_4911 NC_015703.1 5671588 5672709 R PFAM: Fic/DOC family; Fic family protein complement(5671588..5672709) Runella slithyformis DSM 19594 10873462 YP_004658354.1 CDS Runsl_4912 NC_015703.1 5672899 5673381 R COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR019752:IPR002880; KEGG: gpb:HDN1F_09550 2-ketoglutarate: nadp oxidoreductase, alpha subunit; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase; PRIAM: 2-oxoglutarate synthase; SPTR: 2-ketoglutarate: nadp oxidoreductase, alpha subunit; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, alpha subunit; hypothetical protein complement(5672899..5673381) Runella slithyformis DSM 19594 10873463 YP_004658355.1 CDS Runsl_4913 NC_015703.1 5673505 5675334 R PFAM: domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, alpha subunit; COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR013027:IPR001450; KEGG: gpb:HDN1F_09540 2-ketoglutarate: NADP oxidoreductase, gamma subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; PRIAM: Glutamate synthase (NADPH); SPTR: 4Fe-4S binding domain protein; 2-oxoacid:acceptor oxidoreductase subunit alpha complement(5673505..5675334) Runella slithyformis DSM 19594 10873464 YP_004658356.1 CDS Runsl_4914 NC_015703.1 5675425 5677221 R PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG2273 Beta-glucanase/Beta-glucan synthetase; InterPro IPR004129:IPR000757; KEGG: cly:Celly_2438 licheninase; PFAM: Glycoside hydrolase, family 16; Glycerophosphoryl diester phosphodiesterase; PRIAM: Licheninase; SPTR: Glycoside hydrolase 16; glutamate synthase complement(5675425..5677221) Runella slithyformis DSM 19594 10873465 YP_004658357.1 CDS Runsl_4915 NC_015703.1 5677617 5679125 D PFAM: Glycerophosphoryl diester phosphodiesterase; Glycosyl hydrolases family 16; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: lby:Lbys_2250 RNA polymerase, sigma-24 subunit, ecf subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; licheninase 5677617..5679125 Runella slithyformis DSM 19594 10873466 YP_004658358.1 CDS Runsl_4916 NC_015703.1 5679307 5679864 D PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: lby:Lbys_2249 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; ECF subfamily RNA polymerase sigma-24 subunit 5679307..5679864 Runella slithyformis DSM 19594 10873467 YP_004658359.1 CDS Runsl_4917 NC_015703.1 5679886 5680884 D PFAM: FecR protein; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1791 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; anti-FecI sigma factor FecR 5679886..5680884 Runella slithyformis DSM 19594 10873468 YP_004658360.1 CDS Runsl_4918 NC_015703.1 5681002 5684541 D PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: zpr:ZPR_0682 outer hypothetical protein, probably involved in nutrient binding; PFAM: RagB/SusD; SPTR: outer membrane protein, probably involved in nutrient binding; TonB-dependent receptor plug 5681002..5684541 Runella slithyformis DSM 19594 10873469 YP_004658361.1 CDS Runsl_4919 NC_015703.1 5684566 5686206 D PFAM: SusD family; RagB/SusD domain-containing protein 5684566..5686206 Runella slithyformis DSM 19594 10873470 YP_004658362.1 CDS Runsl_4920 NC_015703.1 5686220 5686909 D COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: pfo:Pfl01_0902 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold; hypothetical protein 5686220..5686909 Runella slithyformis DSM 19594 10873471 YP_004658363.1 CDS Runsl_4921 NC_015703.1 5687008 5687883 D PFAM: alpha/beta hydrolase fold; KEGG: aae:aq_1684 alginate synthesis-related protein; SPTR: uncharacterized protein; alpha/beta hydrolase 5687008..5687883 Runella slithyformis DSM 19594 10873472 YP_004658364.1 CDS Runsl_4922 NC_015703.1 5687912 5689075 D COGs: COG1874 Beta-galactosidase; KEGG: tle:Tlet_0218 glycoside hydrolase 42 protein; SPTR: Glycoside hydrolase 42 domain protein; hypothetical protein 5687912..5689075 Runella slithyformis DSM 19594 10873473 YP_004658365.1 CDS Runsl_4923 NC_015703.1 5689087 5691285 D PFAM: Beta-galactosidase trimerisation domain; Beta-galactosidase; InterPro IPR012944; KEGG: sli:Slin_2992 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; hypothetical protein 5689087..5691285 Runella slithyformis DSM 19594 10873474 YP_004658366.1 CDS Runsl_4924 NC_015703.1 5691396 5693168 R PFAM: SusD family; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1460 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; RagB/SusD domain-containing protein complement(5691396..5693168) Runella slithyformis DSM 19594 10873475 YP_004658367.1 CDS Runsl_4925 NC_015703.1 5693253 5696783 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: lby:Lbys_2249 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; TonB-dependent receptor plug complement(5693253..5696783) Runella slithyformis DSM 19594 10873476 YP_004658368.1 CDS Runsl_4926 NC_015703.1 5696834 5697811 R PFAM: FecR protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284:IPR014327; KEGG: lby:Lbys_2250 RNA polymerase, sigma-24 subunit, ecf subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; anti-FecI sigma factor FecR complement(5696834..5697811) Runella slithyformis DSM 19594 10873477 YP_004658369.1 CDS Runsl_4927 NC_015703.1 5697824 5698381 R PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR007630:IPR014284; KEGG: fjo:Fjoh_2896 ECF subfamily RNA polymerase sigma-24 factor; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; SPTR: ECF subfamily RNA polymerase sigma-24 subunit; TIGRFAM: RNA polymerase sigma-70; ECF subfamily RNA polymerase sigma-24 subunit complement(5697824..5698381) Runella slithyformis DSM 19594 10873478 YP_004658370.1 CDS Runsl_4928 NC_015703.1 5698941 5699534 D PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; ECF subfamily RNA polymerase sigma-24 subunit 5698941..5699534 Runella slithyformis DSM 19594 10873479 YP_004658371.1 CDS Runsl_4929 NC_015703.1 5699612 5700715 D PFAM: FecR protein; InterPro IPR011662:IPR012910:IPR000531; KEGG: shg:Sph21_4333 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; anti-FecI sigma factor FecR 5699612..5700715 Runella slithyformis DSM 19594 10873480 YP_004658372.1 CDS Runsl_4930 NC_015703.1 5700907 5704308 D PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: shg:Sph21_4332 RagB/SusD domain-containing protein; PFAM: RagB/SusD; SPTR: uncharacterized protein; TonB-dependent receptor plug 5700907..5704308 Runella slithyformis DSM 19594 10873481 YP_004658373.1 CDS Runsl_4931 NC_015703.1 5704328 5706040 D PFAM: SusD family; KEGG: sli:Slin_4316 hypothetical protein; SPTR: uncharacterized protein; RagB/SusD domain-containing protein 5704328..5706040 Runella slithyformis DSM 19594 10873482 YP_004658374.1 CDS Runsl_4932 NC_015703.1 5706162 5708648 D COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR007630:IPR014284; KEGG: sli:Slin_6565 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein 5706162..5708648 Runella slithyformis DSM 19594 10873483 YP_004658375.1 CDS Runsl_4933 NC_015703.1 5709034 5709645 D PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: dfe:Dfer_2117 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; ECF subfamily RNA polymerase sigma-24 subunit 5709034..5709645 Runella slithyformis DSM 19594 10873484 YP_004658376.1 CDS Runsl_4934 NC_015703.1 5709668 5710762 D PFAM: FecR protein; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_2219 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; anti-FecI sigma factor FecR 5709668..5710762 Runella slithyformis DSM 19594 10873485 YP_004658377.1 CDS Runsl_4935 NC_015703.1 5710930 5714295 D PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_2261 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: uncharacterized protein; TonB-dependent receptor plug 5710930..5714295 Runella slithyformis DSM 19594 10873486 YP_004658378.1 CDS Runsl_4936 NC_015703.1 5714316 5715932 D PFAM: SusD family; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: dfe:Dfer_4489 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; RagB/SusD domain-containing protein 5714316..5715932 Runella slithyformis DSM 19594 10873487 YP_004658379.1 CDS Runsl_4937 NC_015703.1 5715998 5717317 D PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sli:Slin_2652 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; oxidoreductase domain-containing protein 5715998..5717317 Runella slithyformis DSM 19594 10873488 YP_004658380.1 CDS Runsl_4938 NC_015703.1 5717332 5718180 D PFAM: Xylose isomerase-like TIM barrel; xylose isomerase domain-containing protein 5717332..5718180 Runella slithyformis DSM 19594 10873489 YP_004658381.1 CDS Runsl_4939 NC_015703.1 5718241 5718696 R COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR002792:IPR010280:IPR001566; KEGG: psn:Pedsa_3674 23S rRNA m(5)U-1939 methyltransferase; PFAM: (Uracil-5)-methyltransferase; Deoxyribonuclease/rho motif-related TRAM; SPTR: 23S rRNA m(5)U-1939 methyltransferase; TIGRFAM: 23S rRNA methyltransferase/RumA; hypothetical protein complement(5718241..5718696) Runella slithyformis DSM 19594 10873490 YP_004658382.1 CDS Runsl_4940 NC_015703.1 5718776 5720347 R PFAM: TRAM domain; tRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: sli:Slin_1687 hypothetical protein; SPTR: uncharacterized protein; TrmA family RNA methyltransferase complement(5718776..5720347) Runella slithyformis DSM 19594 10873491 YP_004658383.1 CDS Runsl_4941 NC_015703.1 5720372 5722603 D COGs: COG0657 Esterase/lipase; KEGG: cat:CA2559_11223 probable lipase; SPTR: lipase; hypothetical protein 5720372..5722603 Runella slithyformis DSM 19594 10873492 YP_004658384.1 CDS Runsl_4942 NC_015703.1 5722620 5723462 R PFAM: alpha/beta hydrolase fold; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_5738 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; hypothetical protein complement(5722620..5723462) Runella slithyformis DSM 19594 10873493 YP_004658385.1 CDS Runsl_4943 NC_015703.1 5723705 5724478 D PFAM: short chain dehydrogenase; KEGG: sli:Slin_1685 hypothetical protein; SPTR: uncharacterized protein; 3-oxoacyl-ACP reductase 5723705..5724478 Runella slithyformis DSM 19594 10873494 YP_004658386.1 CDS Runsl_4944 NC_015703.1 5724568 5725269 D InterPro IPR010895; KEGG: sli:Slin_2026 CHRD domain containing protein; PFAM: CHRD; SMART: CHRD; SPTR: CHRD domain containing protein; hypothetical protein 5724568..5725269 Runella slithyformis DSM 19594 10873495 YP_004658387.1 CDS Runsl_4945 NC_015703.1 5725350 5725826 D PFAM: CHRD domain; COGs: COG1048 Aconitase A; InterPro IPR001030:IPR000573:IPR006248; KEGG: chu:CHU_2223 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; SPTR: Aconitase; TIGRFAM: Aconitase, mitochondrial-like; CHRD domain-containing protein 5725350..5725826 Runella slithyformis DSM 19594 10873496 YP_004658388.1 CDS Runsl_4946 NC_015703.1 5725969 5728242 R PFAM: Aconitase C-terminal domain; Aconitase (aconitate hydratase); TIGRFAM: aconitate hydratase, mitochondrial; aconitate hydratase complement(5725969..5728242) Runella slithyformis DSM 19594 10873497 YP_004658389.1 CDS Runsl_4947 NC_015703.1 5728445 5728942 R COGs: COG1524 Uncharacterized protein of the AP superfamily; InterPro IPR002591; KEGG: sli:Slin_6200 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase; hypothetical protein complement(5728445..5728942) Runella slithyformis DSM 19594 10873498 YP_004658390.1 CDS Runsl_4948 NC_015703.1 5729018 5730262 R PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase; COGs: COG0855 Polyphosphate kinase; HAMAP: Polyphosphate kinase; InterPro IPR003414; KEGG: sli:Slin_2997 polyphosphate kinase; PFAM: Polyphosphate kinase; PRIAM: Polyphosphate kinase; SPTR: Polyphosphate kinase; TIGRFAM: polyphosphate kinase 1; type I phosphodiesterase/nucleotide pyrophosphatase complement(5729018..5730262) Runella slithyformis DSM 19594 10873499 YP_004658391.1 CDS Runsl_4949 NC_015703.1 5730259 5732580 R PFAM: Polyphosphate kinase; TIGRFAM: polyphosphate kinase 1; polyphosphate kinase complement(5730259..5732580) Runella slithyformis DSM 19594 10873500 YP_004658392.1 CDS Runsl_4950 NC_015703.1 5732681 5732848 D COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterProIPR003594:IPR001241:IPR011557:IPR013506:IPR 006171:IPR002288; KEGG: dfe:Dfer_4986 DNA gyrase, B subunit; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like; SPTR: DNA gyrase subunit B; TIGRFAM: DNA gyrase, subunit B; hypothetical protein 5732681..5732848 Runella slithyformis DSM 19594 10873501 YP_004658393.1 CDS Runsl_4951 NC_015703.1 5732914 5734884 R PFAM: Toprim domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA gyrase, B subunit; KEGG: phe:Phep_4112 tetratricopeptide domain-containing protein; SPTR: Tetratricopeptide domain protein; DNA gyrase subunit B complement(5732914..5734884) Runella slithyformis DSM 19594 10873502 YP_004658394.1 CDS Runsl_4952 NC_015703.1 5735258 5738218 R KEGG: sli:Slin_3425 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5735258..5738218) Runella slithyformis DSM 19594 10873503 YP_004658395.1 CDS Runsl_4953 NC_015703.1 5738311 5738919 D KEGG: dfe:Dfer_4738 ASPIC/UnbV domain protein; SPTR: ASPIC/UnbV domain protein; hypothetical protein 5738311..5738919 Runella slithyformis DSM 19594 10873504 YP_004658396.1 CDS Runsl_4954 NC_015703.1 5739024 5742326 R PFAM: ASPIC and UnbV; KEGG: sli:Slin_3979 hypothetical protein; SPTR: uncharacterized protein; ASPIC/UnbV domain-containing protein complement(5739024..5742326) Runella slithyformis DSM 19594 10873505 YP_004658397.1 CDS Runsl_4955 NC_015703.1 5742406 5743998 R COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_3978 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; hypothetical protein complement(5742406..5743998) Runella slithyformis DSM 19594 10873506 YP_004658398.1 CDS Runsl_4956 NC_015703.1 5744030 5747137 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; manually curated; TonB-dependent receptor complement(5744030..5747137) Runella slithyformis DSM 19594 10873507 YP_004658399.1 CDS Runsl_4958 NC_015703.1 5747707 5748801 R PFAM: Membrane dipeptidase (Peptidase M19); COGs: COG4850 conserved hypothetical protein; InterPro IPR019236; KEGG: phe:Phep_4163 hypothetical protein; PFAM: Protein of unknown function DUF2183; SPTR: uncharacterized protein; peptidase M19 complement(5747707..5748801) Runella slithyformis DSM 19594 10873509 YP_004658400.1 CDS Runsl_4959 NC_015703.1 5748865 5749854 R PFAM: Uncharacterized conserved protein (DUF2183); COGs: COG1597 Sphingosine kinase; InterPro IPR001206; KEGG: phe:Phep_4164 diacylglycerol kinase catalytic subunit; PFAM: Diacylglycerol kinase, catalytic region; SMART: Diacylglycerol kinase, catalytic region; SPTR: uncharacterized protein; hypothetical protein complement(5748865..5749854) Runella slithyformis DSM 19594 10873510 YP_004658401.1 CDS Runsl_4960 NC_015703.1 5749905 5750798 D PFAM: Diacylglycerol kinase catalytic domain; Diacylglycerol kinase accessory domain; KEGG: sli:Slin_2995 hypothetical protein; SPTR: uncharacterized protein; diacylglycerol kinase catalytic subunit 5749905..5750798 Runella slithyformis DSM 19594 10873511 YP_004658402.1 CDS Runsl_4961 NC_015703.1 5750950 5751324 R COGs: COG0686 Alanine dehydrogenase; InterPro IPR007886:IPR007698; KEGG: sli:Slin_2994 alanine dehydrogenase/PNT domain protein; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal; PRIAM: Alanine dehydrogenase; SPTR: Alanine dehydrogenase/PNT domain protein; hypothetical protein complement(5750950..5751324) Runella slithyformis DSM 19594 10873512 YP_004658403.1 CDS Runsl_4962 NC_015703.1 5751462 5752673 R PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase; COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: sli:Slin_2993 hypothetical protein; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria; SPTR: uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; alanine dehydrogenase complement(5751462..5752673) Runella slithyformis DSM 19594 10873513 YP_004658404.1 CDS Runsl_4963 NC_015703.1 5752696 5753127 R PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family; hypothetical protein complement(5752696..5753127) Runella slithyformis DSM 19594 10873514 YP_004658405.1 CDS Runsl_4964 NC_015703.1 5753141 5753317 R COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: dfe:Dfer_4956 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein; hypothetical protein complement(5753141..5753317) Runella slithyformis DSM 19594 10873515 YP_004658406.1 CDS Runsl_4965 NC_015703.1 5753574 5754614 D PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; KEGG: sli:Slin_1872 hypothetical protein; SPTR: uncharacterized protein; oxidoreductase domain-containing protein 5753574..5754614 Runella slithyformis DSM 19594 10873516 YP_004658407.1 CDS Runsl_4966 NC_015703.1 5754708 5756069 R PFAM: Protein of unknown function (DUF3570); SPTR: uncharacterized protein; hypothetical protein complement(5754708..5756069) Runella slithyformis DSM 19594 10873517 YP_004658408.1 CDS Runsl_4967 NC_015703.1 5756601 5757470 D COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_1228 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Glucose 1-dehydrogenase; SPTR: Short-chain dehydrogenase/reductase SDR; hypothetical protein 5756601..5757470 Runella slithyformis DSM 19594 10873518 YP_004658409.1 CDS Runsl_4968 NC_015703.1 5757541 5758338 R PFAM: short chain dehydrogenase; COGs: COG2909 ATP-dependent transcriptional regulator protein; InterPro IPR000792; KEGG: aba:Acid345_2902 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: Transcriptional regulator, LuxR family; glucose 1-dehydrogenase complement(5757541..5758338) Runella slithyformis DSM 19594 10873519 YP_004658410.1 CDS Runsl_4969 NC_015703.1 5758386 5758868 D PFAM: Bacterial regulatory proteins, luxR family; KEGG: aba:Acid345_2901 hypothetical protein; SPTR: uncharacterized protein; LuxR family transcriptional regulator 5758386..5758868 Runella slithyformis DSM 19594 10873520 YP_004658411.1 CDS Runsl_4970 NC_015703.1 5758981 5759502 D COGs: COG2378 transcriptional regulator protein; KEGG: cpi:Cpin_1199 transcriptional regulator; SPTR: transcriptional regulator protein; hypothetical protein 5758981..5759502 Runella slithyformis DSM 19594 10873521 YP_004658412.1 CDS Runsl_4971 NC_015703.1 5759779 5760801 R KEGG: sli:Slin_3847 CRISPR-associated protein Cas6; SPTR: CRISPR-associated protein Cas6; transcriptional regulator complement(5759779..5760801) Runella slithyformis DSM 19594 10873522 YP_004658413.1 CDS Runsl_4972 NC_015703.1 5760970 5761401 D COGs: COG1583 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR010156; KEGG: cts:Ctha_1732 CRISPR-associated protein Cas6; SPTR: CRISPR-associated protein Cas6; TIGRFAM: CRISPR-associated protein, Cas6; hypothetical protein 5760970..5761401 Runella slithyformis DSM 19594 10873523 YP_004658414.1 CDS Runsl_4973 NC_015703.1 5761430 5762092 D PFAM: CRISPR associated protein Cas6; TIGRFAM: CRISPR-associated endoribonuclease Cas6; KEGG: cts:Ctha_1731 hypothetical protein; SPTR: uncharacterized protein; CRISPR-associated protein Cas6 5761430..5762092 Runella slithyformis DSM 19594 10873524 YP_004658415.1 CDS Runsl_4974 NC_015703.1 5762101 5762682 D COGs: COG1203 helicase; InterProIPR001650:IPR006675:IPR006483:IPR006474:IPR 006674; KEGG: cts:Ctha_1730 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; DNA/RNA helicase, C-terminal; SMART: DNA/RNA helicase, C-terminal; SPTR: Metal dependent phosphohydrolase; TIGRFAM: Helicase Cas3, CRISPR-associated, core; CRISPR-associated HD domain; HDIG; hypothetical protein 5762101..5762682 Runella slithyformis DSM 19594 10873525 YP_004658416.1 CDS Runsl_4975 NC_015703.1 5762682 5764832 D PFAM: HD domain; DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated endonuclease Cas3-HD; uncharacterized domain HDIG; KEGG: cts:Ctha_1729 hypothetical protein; SPTR: uncharacterized protein; metal dependent phosphohydrolase 5762682..5764832 Runella slithyformis DSM 19594 10873526 YP_004658417.1 CDS Runsl_4976 NC_015703.1 5764829 5766229 D COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated; hypothetical protein 5764829..5766229 Runella slithyformis DSM 19594 10873527 YP_004658418.1 CDS Runsl_4977 NC_015703.1 5766256 5767267 D PFAM: Rhodopirellula transposase; 'Paired box' domain; KEGG: cts:Ctha_1728 hypothetical protein; SPTR: uncharacterized protein; transposase join(5766256..5766720,5766722..5767267) Runella slithyformis DSM 19594 10873528 YP_004658419.1 CDS Runsl_4978 NC_015703.1 5767376 5768431 D hypothetical protein 5767376..5768431 Runella slithyformis DSM 19594 10873529 YP_004658420.1 CDS Runsl_4979 NC_015703.1 5768488 5768979 D COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: rlg:Rleg_5475 AAA ATPase; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; hypothetical protein 5768488..5768979 Runella slithyformis DSM 19594 10873530 YP_004658421.1 CDS Runsl_4980 NC_015703.1 5769050 5770210 D COGs: COG1468 RecB family exonuclease; InterPro IPR013343; KEGG: osp:Odosp_1295 CRISPR-associated protein Cas4; PFAM: CRISPR-associated protein Cas4; SPTR: CRISPR-associated exonuclease, Cas4 family; TIGRFAM: CRISPR-associated protein Cas4; ATPase AAA 5769050..5770210 Runella slithyformis DSM 19594 10873531 YP_004658422.1 CDS Runsl_4981 NC_015703.1 5770207 5770749 D PFAM: Domain of unknown function DUF83; TIGRFAM: CRISPR-associated protein Cas4; COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR019858:IPR002729; KEGG: osp:Odosp_1294 CRISPR-associated protein Cas1; PFAM: CRISPR-associated protein Cas1; SPTR: CRISPR-associated protein Cas1; TIGRFAM: CRISPR-associated protein Cas1, HMARI/TNEAP subtype; CRISPR-associated protein Cas1; CRISPR-associated protein Cas4 5770207..5770749 Runella slithyformis DSM 19594 10873532 YP_004658423.1 CDS Runsl_4982 NC_015703.1 5770746 5771750 D PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP; CRISPR-associated endonuclease Cas1; COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR003799; KEGG: pgi:PG2013 CRISPR-associated Cas2 family protein; SPTR: CRISPR-associated protein Cas2; TIGRFAM: Protein of unknown function DUF196; CRISPR-associated protein Cas1 5770746..5771750 Runella slithyformis DSM 19594 10873533 YP_004658424.1 CDS Runsl_4983 NC_015703.1 5771790 5772053 D PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2; InterPro IPR001387; KEGG: dfe:Dfer_2028 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; CRISPR-associated protein Cas2 5771790..5772053 Runella slithyformis DSM 19594 10873534 YP_004658425.1 CDS Runsl_4984 NC_015703.1 5784568 5785389 R PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein complement(5784568..5785389) Runella slithyformis DSM 19594 10873535 YP_004658426.1 CDS Runsl_4985 NC_015703.1 5785408 5785533 R InterPro IPR019096; PFAM: YopX protein; hypothetical protein complement(5785408..5785533) Runella slithyformis DSM 19594 10873536 YP_004658427.1 CDS Runsl_4986 NC_015703.1 5785678 5786157 D PFAM: YopX protein; COGs: COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenase; InterPro IPR000262; KEGG: rxy:Rxyl_1052 lactate 2-monooxygenase; PFAM: FMN-dependent dehydrogenase; PRIAM: Lactate 2-monooxygenase; SPTR: Isopentenyl-diphosphate delta-isomerase II 2; hypothetical protein 5785678..5786157 Runella slithyformis DSM 19594 10873537 YP_004658428.1 CDS Runsl_4987 NC_015703.1 5786172 5787428 R PFAM: FMN-dependent dehydrogenase; COGs: COG4539 membrane protein; InterPro IPR009305; KEGG: mtt:Ftrac_0080 hypothetical protein; SPTR: Membrane protein; Lactate 2-monooxygenase complement(5786172..5787428) Runella slithyformis DSM 19594 10873538 YP_004658429.1 CDS Runsl_4988 NC_015703.1 5787524 5787988 R PFAM: Protein of unknown function (DUF962); COGs: COG4870 Cysteine protease; InterPro IPR000668; KEGG: psb:Psyr_2881 peptidase C1A, papain; PFAM: Peptidase C1A, papain C-terminal; SMART: Peptidase C1A, papain C-terminal; SPTR: Papain family cysteine protease; hypothetical protein complement(5787524..5787988) Runella slithyformis DSM 19594 10873539 YP_004658430.1 CDS Runsl_4989 NC_015703.1 5788118 5789218 R PFAM: Papain family cysteine protease; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_3987 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; peptidase C1A papain complement(5788118..5789218) Runella slithyformis DSM 19594 10873540 YP_004658431.1 CDS Runsl_4990 NC_015703.1 5789473 5790258 R PFAM: short chain dehydrogenase; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sli:Slin_3986 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; 3-oxoacyl-ACP reductase complement(5789473..5790258) Runella slithyformis DSM 19594 10873541 YP_004658432.1 CDS Runsl_4991 NC_015703.1 5790289 5791347 R PFAM: Xylose isomerase-like TIM barrel; InterPro IPR013428; KEGG: sli:Slin_3985 dehydrogenase; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; xylose isomerase domain-containing protein complement(5790289..5791347) Runella slithyformis DSM 19594 10873542 YP_004658433.1 CDS Runsl_4992 NC_015703.1 5791484 5794051 R TIGRFAM: membrane-bound dehydrogenase domain; COGs: COG0724 RNA-binding protein (RRM domain); InterPro IPR000504; KEGG: rba:RB10458 RNA-binding protein; PFAM: RNA recognition motif, RNP-1; SMART: RNA recognition motif, RNP-1; SPTR: RNA-binding protein; membrane-bound dehydrogenase domain-containing protein complement(5791484..5794051) Runella slithyformis DSM 19594 10873543 YP_004658434.1 CDS Runsl_4993 NC_015703.1 5794366 5794749 R PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: cpi:Cpin_0913 peptidase M16 domain protein; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: Peptidase M16 domain protein; RNP-1 like RNA-binding protein complement(5794366..5794749) Runella slithyformis DSM 19594 10873544 YP_004658435.1 CDS Runsl_4994 NC_015703.1 5795152 5798091 D PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16); COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR014036; KEGG: sli:Slin_0739 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal; SPTR: Transcriptional regulator, DeoR family; peptidase M16 domain-containing protein 5795152..5798091 Runella slithyformis DSM 19594 10873545 YP_004658436.1 CDS Runsl_4995 NC_015703.1 5798141 5798896 R PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain; InterPro IPR004385:IPR000086; KEGG: dfe:Dfer_3936 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; TIGRFAM: Nucleoside diphosphate pyrophosphatase; DeoR family transcriptional regulator complement(5798141..5798896) Runella slithyformis DSM 19594 10873546 YP_004658437.1 CDS Runsl_4996 NC_015703.1 5798959 5799540 D PFAM: NUDIX domain; TIGRFAM: nudix-type nucleoside diphosphatase, YffH/AdpP family; COGs: COG2971 N-acetylglucosamine kinase; KEGG: dfe:Dfer_3564 hypothetical protein; SPTR: uncharacterized protein; nucleoside diphosphate pyrophosphatase 5798959..5799540 Runella slithyformis DSM 19594 10873547 YP_004658438.1 CDS Runsl_4997 NC_015703.1 5799547 5800386 R PFAM: BadF/BadG/BcrA/BcrD ATPase; KEGG: psn:Pedsa_0334 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5799547..5800386) Runella slithyformis DSM 19594 10873548 YP_004658439.1 CDS Runsl_4998 NC_015703.1 5800386 5800718 R PFAM: Protein of unknown function (DUF1044); hypothetical protein complement(5800386..5800718) Runella slithyformis DSM 19594 10873549 YP_004658440.1 CDS Runsl_4999 NC_015703.1 5800708 5800938 R COGs: COG0321 Lipoate-protein ligase B; HAMAP: Octanoyltransferase; InterPro IPR000544:IPR004143; KEGG: dfe:Dfer_3712 lipoate-protein ligase B; PFAM: Biotin/lipoate A/B protein ligase; PRIAM: Lipoyl(octanoyl) transferase; SPTR: Octanoyltransferase; TIGRFAM: Octanoyltransferase; hypothetical protein complement(5800708..5800938) Runella slithyformis DSM 19594 10873550 YP_004658441.1 CDS Runsl_5000 NC_015703.1 5800992 5801708 D PFAM: Biotin/lipoate A/B protein ligase; TIGRFAM: lipoate-protein ligase B; COGs: COG0514 Superfamily II DNA helicase; InterPro IPR014001:IPR001650:IPR018329:IPR011545; KEGG: dfe:Dfer_3780 ATP-dependent DNA helicase, RecQ family; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent DNA helicase, RecQ family; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, N-terminal; Octanoyltransferase 5800992..5801708 Runella slithyformis DSM 19594 10873551 YP_004658442.1 CDS Runsl_5001 NC_015703.1 5801838 5803739 D PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; InterPro IPR002625; KEGG: dfe:Dfer_2585 Smr protein/MutS2; PFAM: Smr protein/MutS2 C-terminal; SPTR: Smr domain protein; ATP-dependent DNA helicase RecQ 5801838..5803739 Runella slithyformis DSM 19594 10873552 YP_004658443.1 CDS Runsl_5002 NC_015703.1 5803834 5804811 D PFAM: Smr domain; COGs: COG0443 Molecular chaperone; HAMAP: Chaperone DnaK; InterPro IPR012725:IPR013126; KEGG: dfe:Dfer_1226 molecular chaperone DnaK; PFAM: Heat shock protein 70; SPTR: Chaperone protein DnaK; TIGRFAM: Chaperone DnaK; Smr protein/MutS2 5803834..5804811 Runella slithyformis DSM 19594 10873553 YP_004658444.1 CDS Runsl_5003 NC_015703.1 5805046 5806959 D PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK; InterPro IPR019226; PFAM: Protein of unknown function DUF2158; molecular chaperone DnaK 5805046..5806959 Runella slithyformis DSM 19594 10873554 YP_004658445.1 CDS Runsl_5004 NC_015703.1 5807472 5807678 D PFAM: Uncharacterized small protein (DUF2158); hypothetical protein 5807472..5807678 Runella slithyformis DSM 19594 10873555 YP_004658446.1 CDS Runsl_5005 NC_015703.1 5807575 5807886 R hypothetical protein complement(5807575..5807886) Runella slithyformis DSM 19594 10873556 YP_004658447.1 CDS Runsl_5006 NC_015703.1 5807916 5808170 D COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR002818; KEGG: clj:CLJU_c17590 intracellular protease/amidase related enzyme,ThiJ family; PFAM: ThiJ/PfpI; SPTR: DJ-1/PfpI family protein; hypothetical protein 5807916..5808170 Runella slithyformis DSM 19594 10873557 YP_004658448.1 CDS Runsl_5007 NC_015703.1 5808529 5809245 D PFAM: DJ-1/PfpI family; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: dfe:Dfer_1022 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; ThiJ/PfpI domain-containing protein 5808529..5809245 Runella slithyformis DSM 19594 10873558 YP_004658449.1 CDS Runsl_5008 NC_015703.1 5809310 5809897 D PFAM: Cyclic nucleotide-binding domain; KEGG: dfe:Dfer_1023 hypothetical protein; SPTR: uncharacterized protein; Crp/Fnr family transcriptional regulator 5809310..5809897 Runella slithyformis DSM 19594 10873559 YP_004658450.1 CDS Runsl_5009 NC_015703.1 5809965 5810540 D COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: sli:Slin_4170 peptidase M16 domain protein; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: Peptidase M16 domain protein; hypothetical protein 5809965..5810540 Runella slithyformis DSM 19594 10873560 YP_004658451.1 CDS Runsl_5010 NC_015703.1 5810620 5813523 D PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16); COGs: COG2183 Transcriptional accessory protein; InterPro IPR006641:IPR018974:IPR003029; KEGG: dfe:Dfer_1085 RNA binding S1 domain protein; PFAM: Tex-like protein, N-terminal; Ribosomal protein S1, RNA binding domain; SPTR: RNA binding S1 domain protein; peptidase M16 domain-containing protein 5810620..5813523 Runella slithyformis DSM 19594 10873561 YP_004658452.1 CDS Runsl_5011 NC_015703.1 5813597 5815717 R PFAM: Tex-like protein N-terminal domain; S1 RNA binding domain; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region; COGs: COG4857 kinase; InterPro IPR002575; KEGG: cao:Celal_1559 aminoglycoside phosphotransferase; PFAM: Aminoglycoside phosphotransferase; SPTR: Aminoglycoside phosphotransferase; Tex-like protein complement(5813597..5815717) Runella slithyformis DSM 19594 10873562 YP_004658453.1 CDS Runsl_5012 NC_015703.1 5816003 5816986 D PFAM: Phosphotransferase enzyme family; COGs: COG0358 DNA primase; InterProIPR002694:IPR006154:IPR006295:IPR013264:IPR 006171; KEGG: dfe:Dfer_3370 DNA primase; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain; SPTR: DNA primase; TIGRFAM: DNA primase, DnaG; aminoglycoside phosphotransferase 5816003..5816986 Runella slithyformis DSM 19594 10873563 YP_004658454.1 CDS Runsl_5013 NC_015703.1 5816992 5819067 R PFAM: Toprim domain; CHC2 zinc finger; DNA primase catalytic core, N-terminal domain; TIGRFAM: DNA primase, catalytic core; COGs: COG2355 Zn-dependent dipeptidase microsomal dipeptidase homolog; InterPro IPR008257; KEGG: lby:Lbys_2765 membrane dipeptidase; PFAM: Peptidase M19, renal dipeptidase; PRIAM: Membrane dipeptidase; SPTR: Membrane dipeptidase; DNA primase complement(5816992..5819067) Runella slithyformis DSM 19594 10873564 YP_004658455.1 CDS Runsl_5014 NC_015703.1 5819593 5820816 R PFAM: Membrane dipeptidase (Peptidase M19); InterPro IPR009739; KEGG: vpa:VP1847 hypothetical protein; PFAM: Protein of unknown function DUF1311; SPTR: uncharacterized protein; membrane dipeptidase complement(5819593..5820816) Runella slithyformis DSM 19594 10873565 YP_004658456.1 CDS Runsl_5015 NC_015703.1 5820850 5821269 R PFAM: Protein of unknown function (DUF1311); COGs: COG1600 Uncharacterized Fe-S protein; InterPro IPR004453:IPR013542:IPR001450; KEGG: sli:Slin_1519 iron-sulfur cluster binding protein; PFAM: Domain of unknown function DUF1730; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: Iron-sulfur cluster binding protein; TIGRFAM: 4Fe-4S cluster binding; hypothetical protein complement(5820850..5821269) Runella slithyformis DSM 19594 10873566 YP_004658457.1 CDS Runsl_5016 NC_015703.1 5821426 5822370 D PFAM: Domain of unknown function (DUF1730); TIGRFAM: iron-sulfur cluster binding protein, COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: bth:BT_2763 transposase; PFAM: Transposase, mutator type; SPTR: Transposase; iron-sulfur cluster binding protein 5821426..5822370 Runella slithyformis DSM 19594 10873567 YP_004658458.1 CDS Runsl_5017 NC_015703.1 5822463 5823674 D PFAM: Transposase, Mutator family; KEGG: tca:659090 kinesin 7; SPTR: Surface protein; transposase mutator type 5822463..5823674 Runella slithyformis DSM 19594 10873568 YP_004658459.1 CDS Runsl_5018 NC_015703.1 5823936 5824583 R COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated; hypothetical protein complement(5823936..5824583) Runella slithyformis DSM 19594 10873569 YP_004658460.1 CDS Runsl_5019 NC_015703.1 5824683 5825692 R PFAM: Rhodopirellula transposase; 'Paired box' domain; COGs: COG2223 Nitrate/nitrite transporter; InterPro IPR011701; KEGG: dfe:Dfer_1017 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; transposase complement(join(5824683..5825228,5825228..5825692)) Runella slithyformis DSM 19594 10873570 YP_004658461.1 CDS Runsl_5020 NC_015703.1 5825975 5827279 R PFAM: Major Facilitator Superfamily; COGs: COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; InterPro IPR000887; KEGG: dfe:Dfer_1016 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG/KHG aldolase; SPTR: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: KDPG/KHG aldolase; major facilitator superfamily protein complement(5825975..5827279) Runella slithyformis DSM 19594 10873571 YP_004658462.1 CDS Runsl_5021 NC_015703.1 5827279 5827917 R PFAM: KDPG and KHG aldolase; TIGRFAM: Entner-Doudoroff aldolase; COGs: COG4993 Glucose dehydrogenase; InterProIPR018391:IPR019551:IPR002372:IPR019556:IPR 003088; KEGG: dfe:Dfer_1014 quinoprotein glucose dehydrogenase; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal; Cytochrome c, class I; PRIAM: Quinoprotein glucose dehydrogenase; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Quinoprotein glucose dehydrogenase; 2-dehydro-3-deoxyphosphogluconate aldolase complement(5827279..5827917) Runella slithyformis DSM 19594 10873572 YP_004658463.1 CDS Runsl_5022 NC_015703.1 5828105 5830306 R PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus; Cytochrome c; Pyrrolo-quinoline quinone coenzyme C-terminus; PQQ enzyme repeat; KEGG: dfe:Dfer_3444 hypothetical protein; SPTR: uncharacterized protein; quinoprotein glucose dehydrogenase complement(5828105..5830306) Runella slithyformis DSM 19594 10873573 YP_004658464.1 CDS Runsl_5023 NC_015703.1 5830432 5831403 R COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341; KEGG: dfe:Dfer_1010 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; PRIAM: Galactonate dehydratase; SPTR: Mandelate racemase/muconate lactonizing protein; hypothetical protein complement(5830432..5831403) Runella slithyformis DSM 19594 10873574 YP_004658465.1 CDS Runsl_5024 NC_015703.1 5831409 5832650 R PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR006311:IPR013341:IPR013342; KEGG: dfe:Dfer_1008 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal; PRIAM: Galactonate dehydratase; SPTR: Mandelate racemase/muconate lactonizing protein; galactonate dehydratase complement(5831409..5832650) Runella slithyformis DSM 19594 10873575 YP_004658466.1 CDS Runsl_5025 NC_015703.1 5832980 5834335 R PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; galactonate dehydratase complement(5832980..5834335) Runella slithyformis DSM 19594 10873576 YP_004658467.1 CDS Runsl_5026 NC_015703.1 5834564 5834890 R COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: fjo:Fjoh_4487 nitroreductase; PFAM: Nitroreductase-like; SPTR: Nitroreductase; hypothetical protein complement(5834564..5834890) Runella slithyformis DSM 19594 10873577 YP_004658468.1 CDS Runsl_5027 NC_015703.1 5834985 5835617 D PFAM: Nitroreductase; COGs: COG0135 Phosphoribosylanthranilate isomerase; KEGG: sli:Slin_0951 N-(5'phosphoribosyl)anthranilate isomerase (PRAI); SPTR: N-(5'-phosphoribosyl)anthranilate isomerase; nitroreductase 5834985..5835617 Runella slithyformis DSM 19594 10873578 YP_004658469.1 CDS Runsl_5028 NC_015703.1 5835760 5836377 R InterPro IPR001434:IPR008454; KEGG: cag:Cagg_3132 hypothetical protein; PFAM: Protein of unknown function DUF11; Collagen-binding surface protein Cna-like, B region; SPTR: Conserved repeat domain protein; TIGRFAM: Protein of unknown function DUF11; N-(5'-phosphoribosyl)anthranilate isomerase complement(5835760..5836377) Runella slithyformis DSM 19594 10873579 YP_004658470.1 CDS Runsl_5029 NC_015703.1 5836477 5843790 R PFAM: Cna protein B-type domain; Domain of unknown function DUF11; TIGRFAM: conserved repeat domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: zpr:ZPR_0114 HTH domain-containing protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Coproporphyrinogen III oxidase; hypothetical protein complement(5836477..5843790) Runella slithyformis DSM 19594 10873580 YP_004658471.1 CDS Runsl_5030 NC_015703.1 5844453 5845391 D PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931:IPR013589; KEGG: sli:Slin_2855 transglutaminase; PFAM: Transglutaminase-like; Bacterial transglutaminase-like, N-terminal; SMART: Transglutaminase-like; SPTR: Transglutaminase domain protein; AraC family transcriptional regulator 5844453..5845391 Runella slithyformis DSM 19594 10873581 YP_004658472.1 CDS Runsl_5031 NC_015703.1 5845420 5846262 R PFAM: Transglutaminase-like superfamily; Bacterial transglutaminase-like N-terminal region; COGs: COG3484 proteasome-type protease; InterPro IPR001353; KEGG: sli:Slin_2854 proteasome-type protease; PFAM: Proteasome, subunit alpha/beta; SPTR: proteasome-type protease; transglutaminase domain-containing protein complement(5845420..5846262) Runella slithyformis DSM 19594 10873582 YP_004658473.1 CDS Runsl_5032 NC_015703.1 5846322 5847056 R PFAM: Proteasome subunit; COGs: COG2307 conserved hypothetical protein; InterPro IPR007296; KEGG: sli:Slin_0396 hypothetical protein; PFAM: Protein of unknown function DUF403, bacteria; SPTR: uncharacterized protein; 20S proteasome subunits A/B complement(5846322..5847056) Runella slithyformis DSM 19594 10873583 YP_004658474.1 CDS Runsl_5033 NC_015703.1 5847128 5848093 R PFAM: Bacterial domain of unknown function (DUF403); COGs: COG2017 Galactose mutarotase; InterPro IPR008183; KEGG: sli:Slin_1235 aldose 1-epimerase; PFAM: Aldose 1-epimerase; PRIAM: Aldose 1-epimerase; SPTR: Aldose 1-epimerase; hypothetical protein complement(5847128..5848093) Runella slithyformis DSM 19594 10873584 YP_004658475.1 CDS Runsl_5034 NC_015703.1 5848306 5849466 R PFAM: Aldose 1-epimerase; COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001:IPR001650:IPR011545; KEGG: chu:CHU_1658 DEAD box-related helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD box-related helicase (ATP-dependent RNA helicase); aldose 1-epimerase complement(5848306..5849466) Runella slithyformis DSM 19594 10873585 YP_004658476.1 CDS Runsl_5035 NC_015703.1 5849585 5850844 R PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: fjo:Fjoh_3739 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: transcriptional regulator; DEAD/DEAH box helicase complement(5849585..5850844) Runella slithyformis DSM 19594 10873586 YP_004658477.1 CDS Runsl_5036 NC_015703.1 5851266 5852300 D PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469:IPR001375; KEGG: shg:Sph21_1018 peptidase s9b dipeptidylpeptidase IV domain protein; SPTR: Peptidase S9B dipeptidylpeptidase IV domain protein; AraC family transcriptional regulator 5851266..5852300 Runella slithyformis DSM 19594 10873587 YP_004658478.1 CDS Runsl_5037 NC_015703.1 5852420 5854711 D PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region; COGs: COG3533 conserved hypothetical protein; InterPro IPR012878:IPR000421; KEGG: cpi:Cpin_4996 hypothetical protein; PFAM: Protein of unknown function DUF1680; Coagulation factor 5/8 type, C-terminal; SPTR: uncharacterized protein; peptidase s9b dipeptidylpeptidase IV domain-containing protein 5852420..5854711 Runella slithyformis DSM 19594 10873588 YP_004658479.1 CDS Runsl_5038 NC_015703.1 5854790 5857201 D PFAM: F5/8 type C domain; glycosyl hydrolase of unknown function (DUF1680); KEGG: sli:Slin_0237 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5854790..5857201 Runella slithyformis DSM 19594 10873589 YP_004658480.1 CDS Runsl_5039 NC_015703.1 5857264 5859285 D InterPro IPR005184; KEGG: lby:Lbys_3081 hypothetical protein; PFAM: Domain of unknown function DUF306, Meta/HslJ; SPTR: uncharacterized protein; hypothetical protein 5857264..5859285 Runella slithyformis DSM 19594 10873590 YP_004658481.1 CDS Runsl_5040 NC_015703.1 5859375 5859854 D PFAM: META domain; KEGG: nmu:Nmul_A0278 glycosyl transferase; SPTR: uncharacterized protein; hypothetical protein 5859375..5859854 Runella slithyformis DSM 19594 10873591 YP_004658482.1 CDS Runsl_5041 NC_015703.1 5859912 5861240 R KEGG: psn:Pedsa_3200 FkbM family methyltransferase; SPTR: Pcmt-protein-L-isoaspartate(D-aspartate) o-methyltransferase; hypothetical protein complement(5859912..5861240) Runella slithyformis DSM 19594 10873592 YP_004658483.1 CDS Runsl_5042 NC_015703.1 5861252 5861896 R InterPro IPR002797; KEGG: dfe:Dfer_4792 hypothetical protein; PFAM: Polysaccharide biosynthesis protein; SPTR: uncharacterized protein; FkbM family methyltransferase complement(5861252..5861896) Runella slithyformis DSM 19594 10873593 YP_004658484.1 CDS Runsl_5043 NC_015703.1 5861930 5863426 R PFAM: Polysaccharide biosynthesis protein; COGs: COG0381 UDP-N-acetylglucosamine 2-epimerase; InterPro IPR003331; KEGG: sli:Slin_4071 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; PRIAM: UDP-N-acetylglucosamine 2-epimerase; SPTR: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; polysaccharide biosynthesis protein complement(5861930..5863426) Runella slithyformis DSM 19594 10873594 YP_004658485.1 CDS Runsl_5044 NC_015703.1 5863456 5864556 R PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: bfr:BF4507 glycosyltransferase; PFAM: Glycosyl transferase, group 1; SPTR: glycosyltransferase; UDP-N-acetylglucosamine 2-epimerase complement(5863456..5864556) Runella slithyformis DSM 19594 10873595 YP_004658486.1 CDS Runsl_5045 NC_015703.1 5864553 5865764 R PFAM: Glycosyl transferases group 1; COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692; KEGG: sli:Slin_0038 peptidase S45 penicillin amidase; PFAM: Peptidase S45, penicillin amidase; PRIAM: Acyl-homoserine-lactone acylase; SPTR: Peptidase S45 penicillin amidase; group 1 glycosyl transferase complement(5864553..5865764) Runella slithyformis DSM 19594 10873596 YP_004658487.1 CDS Runsl_5046 NC_015703.1 5865921 5868314 R PFAM: Penicillin amidase; COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR011344:IPR000424; KEGG: cpi:Cpin_0936 single-strand binding protein; PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; acyl-homoserine-lactone acylase complement(5865921..5868314) Runella slithyformis DSM 19594 10873597 YP_004658488.1 CDS Runsl_5047 NC_015703.1 5868457 5868804 D PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb); COGs: COG4974 Site-specific recombinase XerD; InterPro IPR011946:IPR002104; KEGG: fbc:FB2170_10354 tyrosine type site-specific recombinase; PFAM: Integrase, catalytic core, phage; SPTR: TnpF; TIGRFAM: Integrase, integron-type; single-strand binding protein 5868457..5868804 Runella slithyformis DSM 19594 10873598 YP_004658489.1 CDS Runsl_5048 NC_015703.1 5868888 5870504 D PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase; TIGRFAM: integron integrase; KEGG: ank:AnaeK_3917 hypothetical protein; SPTR: uncharacterized protein; integron integrase 5868888..5870504 Runella slithyformis DSM 19594 10873599 YP_004658490.1 CDS Runsl_5049 NC_015703.1 5870838 5871323 D PFAM: Protein of unknown function (DUF2679); SPTR: uncharacterized protein; hypothetical protein 5870838..5871323 Runella slithyformis DSM 19594 10873600 YP_004658491.1 CDS Runsl_5050 NC_015703.1 5871541 5871939 R KEGG: ana:all3044 hypothetical protein; SPTR: All3044 protein; hypothetical protein complement(5871541..5871939) Runella slithyformis DSM 19594 10873601 YP_004658492.1 CDS Runsl_5051 NC_015703.1 5872188 5872688 D KEGG: hba:Hbal_0425 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5872188..5872688 Runella slithyformis DSM 19594 10873602 YP_004658493.1 CDS Runsl_5052 NC_015703.1 5872693 5873235 D COGs: COG3832 conserved hypothetical protein; InterPro IPR013538; KEGG: psn:Pedsa_0910 activator of HSP90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase homologue 1-like; SPTR: Activator of Hsp90 ATPase 1 family protein; hypothetical protein 5872693..5873235 Runella slithyformis DSM 19594 10873603 YP_004658494.1 CDS Runsl_5053 NC_015703.1 5873235 5873651 D PFAM: Activator of Hsp90 ATPase homolog 1-like protein; InterPro IPR001845; KEGG: shg:Sph21_2794 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family; Activator of Hsp90 ATPase 1 family protein 5873235..5873651 Runella slithyformis DSM 19594 10873604 YP_004658495.1 CDS Runsl_5054 NC_015703.1 5873648 5873965 D PFAM: Bacterial regulatory protein, arsR family; manually curated; regulatory protein ArsR 5873648..5873965 Runella slithyformis DSM 19594 10873605 YP_004658496.1 CDS Runsl_5056 NC_015703.1 5874143 5874949 D PFAM: PKD domain; KEGG: drt:Dret_2521 hypothetical protein; SPTR: uncharacterized protein; PKD domain-containing protein 5874143..5874949 Runella slithyformis DSM 19594 10873607 YP_004658497.1 CDS Runsl_5057 NC_015703.1 5874881 5875741 R PFAM: Uncharacterised protein family (UPF0236); hypothetical protein complement(5874881..5875741) Runella slithyformis DSM 19594 10873608 YP_004658498.1 CDS Runsl_5058 NC_015703.1 5875843 5876049 R KEGG: phe:Phep_1744 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5875843..5876049) Runella slithyformis DSM 19594 10873609 YP_004658499.1 CDS Runsl_5059 NC_015703.1 5876367 5877182 D Prodigal; manually curated; hypothetical protein 5876367..5877182 Runella slithyformis DSM 19594 10873610 YP_004658500.1 CDS Runsl_5061 NC_015703.1 5878685 5879845 D PFAM: Acyltransferase; KEGG: nhl:Nhal_2068 hypothetical protein; SPTR: uncharacterized protein; acyltransferase 5878685..5879845 Runella slithyformis DSM 19594 10873612 YP_004658501.1 CDS Runsl_5062 NC_015703.1 5880329 5880907 D PFAM: Protoglobin; hypothetical protein 5880329..5880907 Runella slithyformis DSM 19594 10873613 YP_004658502.1 CDS Runsl_5063 NC_015703.1 5880932 5881192 D InterPro IPR018592; KEGG: fbc:FB2170_11031 hypothetical protein; PFAM: Domain of unknown function DUF2024; SPTR: uncharacterized protein; hypothetical protein 5880932..5881192 Runella slithyformis DSM 19594 10873614 YP_004658503.1 CDS Runsl_5064 NC_015703.1 5881454 5881717 D PFAM: Domain of unknown function (DUF2024); InterPro IPR000835; KEGG: fjo:Fjoh_4139 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; hypothetical protein 5881454..5881717 Runella slithyformis DSM 19594 10873615 YP_004658504.1 CDS Runsl_5065 NC_015703.1 5881719 5882315 D PFAM: MarR family; Prodigal; This gene is disrupted by insertion of repetitive element; manually curated; regulatory protein MarR 5881719..5882315 Runella slithyformis DSM 19594 10873616 YP_004658505.1 CDS Runsl_5067 NC_015703.1 5883682 5884692 R PFAM: Transposase IS116/IS110/IS902 family; Transposase; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: fba:FIC_01213 probable integrase; PFAM: Integrase, catalytic core, phage; SPTR: Integrase; transposase IS116/IS110/IS902 family protein complement(5883682..5884692) Runella slithyformis DSM 19594 10873618 YP_004658506.1 CDS Runsl_5068 NC_015703.1 5885185 5885883 R PFAM: Phage integrase; integrase complement(5885185..5885883) Runella slithyformis DSM 19594 10873619 YP_004658507.1 CDS Runsl_5069 NC_015703.1 5886272 5886724 D COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: sli:Slin_1635 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; hypothetical protein 5886272..5886724 Runella slithyformis DSM 19594 10873620 YP_004658508.1 CDS Runsl_5070 NC_015703.1 5886726 5887313 D PFAM: Cyclic nucleotide-binding domain; KEGG: chu:CHU_2272 hypothetical protein; SPTR: uncharacterized protein; Crp/Fnr family transcriptional regulator 5886726..5887313 Runella slithyformis DSM 19594 10873621 YP_004658509.1 CDS Runsl_5071 NC_015703.1 5887392 5888084 D COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR008030; KEGG: sli:Slin_1633 NmrA family protein; SPTR: NmrA family protein; hypothetical protein 5887392..5888084 Runella slithyformis DSM 19594 10873622 YP_004658510.1 CDS Runsl_5072 NC_015703.1 5888091 5889083 D PFAM: NmrA-like family; COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated; NmrA family protein 5888091..5889083 Runella slithyformis DSM 19594 10873623 YP_004658511.1 CDS Runsl_5073 NC_015703.1 5889459 5890470 D PFAM: Rhodopirellula transposase; 'Paired box' domain; transposase join(5889459..5889923,5889925..5890470) Runella slithyformis DSM 19594 10873624 YP_004658512.1 CDS Runsl_5074 NC_015703.1 5890584 5890730 D hypothetical protein 5890584..5890730 Runella slithyformis DSM 19594 10873625 YP_004658513.1 CDS Runsl_5075 NC_015703.1 5890802 5891140 D manually curated; hypothetical protein 5890802..5891140 Runella slithyformis DSM 19594 10873626 YP_004658514.1 CDS Runsl_5077 NC_015703.1 5891981 5892556 D PFAM: Cyclic nucleotide-binding domain; COGs: COG1018 Flavodoxin reductase (ferredoxin-NADPH reductase) family 1; InterPro IPR006694:IPR008333:IPR001433:IPR001041; KEGG: pfl:PFL_3137 phenylacetate-CoA oxygenase, PaaK subunit; PFAM: Fatty acid hydroxylase; Oxidoreductase FAD-binding region; Oxidoreductase FAD/NAD(P)-binding; Ferredoxin; SPTR: Sterol desaturase; Crp/Fnr family transcriptional regulator 5891981..5892556 Runella slithyformis DSM 19594 10873628 YP_004658515.1 CDS Runsl_5078 NC_015703.1 5892667 5894478 D PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; Fatty acid hydroxylase superfamily; KEGG: cpi:Cpin_2508 hypothetical protein; SPTR: uncharacterized protein; fatty acid hydroxylase 5892667..5894478 Runella slithyformis DSM 19594 10873629 YP_004658516.1 CDS Runsl_5079 NC_015703.1 5894483 5895154 D COGs: COG3449 DNA gyrase inhibitor; InterPro IPR018060:IPR000005:IPR010499; KEGG: gur:Gura_3503 transcription activator, effector binding; PFAM: Bacterial transcription activator, effector binding; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC-type; hypothetical protein 5894483..5895154 Runella slithyformis DSM 19594 10873630 YP_004658517.1 CDS Runsl_5080 NC_015703.1 5895899 5896768 D PFAM: Bacterial transcription activator, effector binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: cbi:CLJ_0016 hypothetical protein; SPTR: uncharacterized protein; AraC family transcriptional regulator 5895899..5896768 Runella slithyformis DSM 19594 10873631 YP_004658518.1 CDS Runsl_5081 NC_015703.1 5896830 5897324 D PFAM: Polyketide cyclase / dehydrase and lipid transport; manually curated; hypothetical protein 5896830..5897324 Runella slithyformis DSM 19594 10873632 YP_004658519.1 CDS Runsl_5083 NC_015703.1 5897842 5898705 D PFAM: WD40-like Beta Propeller Repeat; manually curated; hypothetical protein 5897842..5898705 Runella slithyformis DSM 19594 10873634 YP_004658520.1 CDS Runsl_5085 NC_015703.1 5900067 5901083 R PFAM: Transposase DDE domain; transposase IS4 family protein complement(5900067..5901083) Runella slithyformis DSM 19594 10873636 YP_004658521.1 CDS Runsl_5086 NC_015703.1 5901225 5901347 R COGs: COG2354 conserved hypothetical protein; InterPro IPR008526; KEGG: shg:Sph21_0217 protein of unknown function DUF808; PFAM: Protein of unknown function DUF808; SPTR: Conserved hypothetical transmembrane protein; hypothetical protein complement(5901225..5901347) Runella slithyformis DSM 19594 10873637 YP_004658522.1 CDS Runsl_5087 NC_015703.1 5901518 5902384 D PFAM: Protein of unknown function (DUF808); COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR006680; KEGG: fba:FIC_00226 dihydroorotase; PFAM: Amidohydrolase 1; PRIAM: Allantoinase; SPTR: Dihydroorotase; hypothetical protein 5901518..5902384 Runella slithyformis DSM 19594 10873638 YP_004658523.1 CDS Runsl_5088 NC_015703.1 5902633 5903982 D PFAM: Amidohydrolase; TIGRFAM: dihydroorotase, multifunctional complex type; KEGG: cyh:Cyan8802_1036 hypothetical protein; SPTR: uncharacterized protein; allantoinase 5902633..5903982 Runella slithyformis DSM 19594 10873639 YP_004658524.1 CDS Runsl_5089 NC_015703.1 5903972 5904823 D COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140; KEGG: sli:Slin_0324 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; PRIAM: Phosphoglycerate dehydrogenase; SPTR: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; manually curated; hypothetical protein 5903972..5904823 Runella slithyformis DSM 19594 10873640 YP_004658525.1 CDS Runsl_5090 NC_015703.1 5905143 5906087 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; COGs: COG1995 Pyridoxal phosphate biosynthesis protein; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; InterPro IPR005255; KEGG: dfe:Dfer_0418 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; PRIAM: 4-hydroxythreonine-4-phosphate dehydrogenase; SPTR: 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; phosphoglycerate dehydrogenase complement(5905143..5906087) Runella slithyformis DSM 19594 10873641 YP_004658526.1 CDS Runsl_5091 NC_015703.1 5906257 5907342 D PFAM: Pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; Prodigal; manually curated; 4-hydroxythreonine-4-phosphate dehydrogenase 5906257..5907342 Runella slithyformis DSM 19594 10873642 YP_004658527.1 CDS Runsl_5093 NC_015703.1 5907837 5908724 D PFAM: YicC-like family, N-terminal region; Domain of unknown function (DUF1732); TIGRFAM: TIGR00255 family protein; COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176:IPR006108; KEGG: sli:Slin_3957 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; PRIAM: 3-hydroxyacyl-CoA dehydrogenase; SPTR: 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; hypothetical protein 5907837..5908724 Runella slithyformis DSM 19594 10873644 YP_004658528.1 CDS Runsl_5094 NC_015703.1 5908996 5909970 R PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR001610:IPR003018:IPR003661:IPR 003594:IPR001789:IPR008207:IPR013767; KEGG: sli:Slin_3312 multi-sensor hybrid histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; PAS fold; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; PAS; PAC motif; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; 3-hydroxyacyl-CoA dehydrogenase complement(5908996..5909970) Runella slithyformis DSM 19594 10873645 YP_004658529.1 CDS Runsl_5095 NC_015703.1 5910305 5913922 R PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; Hpt domain; TIGRFAM: PAS domain S-box; COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); HAMAP: Ribosomal RNA adenine dimethylase; InterPro IPR020598:IPR011530:IPR001737; KEGG: dfe:Dfer_5760 dimethyladenosine transferase; PFAM: Ribosomal RNA adenine methylase transferase; SMART: Ribosomal RNA adenine methylase transferase, N-terminal; SPTR: Ribosomal RNA small subunit methyltransferase A; TIGRFAM: Ribosomal RNA adenine dimethylase; multi-sensor hybrid histidine kinase complement(5910305..5913922) Runella slithyformis DSM 19594 10873646 YP_004658530.1 CDS Runsl_5096 NC_015703.1 5914364 5915176 D PFAM: Ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase; COGs: COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); InterPro IPR000644:IPR006669:IPR006668:IPR006667; KEGG: sli:Slin_3299 magnesium transporter; PFAM: MgtE integral membrane region; Cystathionine beta-synthase, core; Magnesium transporter, MgtE intracellular region; SPTR: Magnesium transporter; TIGRFAM: Divalent cation transporter; ribosomal RNA small subunit methyltransferase A 5914364..5915176 Runella slithyformis DSM 19594 10873647 YP_004658531.1 CDS Runsl_5097 NC_015703.1 5915329 5916678 D PFAM: MgtE intracellular N domain; CBS domain; Divalent cation transporter; TIGRFAM: Mg2+ transporter (mgtE); COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: ter:Tery_4525 DNA-cytosine methyltransferase; PFAM: DNA methylase, C-5 cytosine-specific; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA methylase, C-5 cytosine-specific; magnesium transporter 5915329..5916678 Runella slithyformis DSM 19594 10873648 YP_004658532.1 CDS Runsl_5098 NC_015703.1 5916772 5917776 D PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); InterPro IPR009528; KEGG: ter:Tery_4526 type II site-specific deoxyribonuclease; PFAM: Restriction endonuclease, type II, BsuBI/PstI, C-terminal; PRIAM: Type II site-specific deoxyribonuclease; SPTR: Type II site-specific deoxyribonuclease; DNA-cytosine methyltransferase 5916772..5917776 Runella slithyformis DSM 19594 10873649 YP_004658533.1 CDS Runsl_5099 NC_015703.1 5917778 5918791 D PFAM: BsuBI/PstI restriction endonuclease C-terminus; InterPro IPR008030; KEGG: sli:Slin_5373 NmrA family protein; SPTR: NmrA family protein; type II site-specific deoxyribonuclease 5917778..5918791 Runella slithyformis DSM 19594 10873650 YP_004658534.1 CDS Runsl_5100 NC_015703.1 5918795 5919820 D PFAM: NmrA-like family; COGs: COG2819 hydrolase of the alpha/beta superfamily; InterPro IPR000801; KEGG: fjo:Fjoh_2146 esterase; PFAM: esterase; SPTR: uncharacterized protein; NmrA family protein 5918795..5919820 Runella slithyformis DSM 19594 10873651 YP_004658535.1 CDS Runsl_5101 NC_015703.1 5919885 5920733 D PFAM: esterase; esterase 5919885..5920733 Runella slithyformis DSM 19594 10873652 YP_004658536.1 CDS Runsl_5102 NC_015703.1 5920833 5920994 D COGs: COG1522 Transcriptional regulators; InterPro IPR019888:IPR019887; KEGG: dfe:Dfer_4405 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type; SPTR: Transcriptional regulator, AsnC family; hypothetical protein 5920833..5920994 Runella slithyformis DSM 19594 10873653 YP_004658537.1 CDS Runsl_5103 NC_015703.1 5921289 5921753 R PFAM: HTH domain; AsnC family; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_4406 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: L-threonine 3-dehydrogenase; SPTR: NAD-dependent epimerase/dehydratase; AsnC family transcriptional regulator complement(5921289..5921753) Runella slithyformis DSM 19594 10873654 YP_004658538.1 CDS Runsl_5104 NC_015703.1 5921947 5922900 D PFAM: NAD dependent epimerase/dehydratase; COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR011282:IPR004839; KEGG: dfe:Dfer_4407 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase, class I/II; PRIAM: Glycine C-acetyltransferase; SPTR: 2-amino-3-ketobutyrate coenzyme A ligase; TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; L-threonine 3-dehydrogenase 5921947..5922900 Runella slithyformis DSM 19594 10873655 YP_004658539.1 CDS Runsl_5105 NC_015703.1 5922905 5924110 D PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase; 2-amino-3-ketobutyrate coenzyme A ligase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sli:Slin_6288 sulfatase; PFAM: Sulfatase; PRIAM: Steryl-sulfatase; SPTR: Sulfatase; 2-amino-3-ketobutyrate CoA ligase 5922905..5924110 Runella slithyformis DSM 19594 10873656 YP_004658540.1 CDS Runsl_5106 NC_015703.1 5924227 5925714 R PFAM: Sulfatase; COGs: COG1490 D-Tyr-tRNAtyr deacylase; HAMAP: D-tyrosyl-tRNA(Tyr) deacylase; InterPro IPR003732; KEGG: dfe:Dfer_5755 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; SPTR: D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; Steryl-sulfatase complement(5924227..5925714) Runella slithyformis DSM 19594 10873657 YP_004658541.1 CDS Runsl_5107 NC_015703.1 5925819 5926271 D PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; COGs: COG4464 Capsular polysaccharide biosynthesis protein; KEGG: cpi:Cpin_4733 capsular polysaccharide biosynthesis protein; SPTR: Capsular polysaccharide biosynthesis protein; D-tyrosyl-tRNA(Tyr) deacylase 5925819..5926271 Runella slithyformis DSM 19594 10873658 YP_004658542.1 CDS Runsl_5108 NC_015703.1 5926375 5927106 D COGs: COG2094 3-methyladenine DNA glycosylase; HAMAP: 3-methyladenine DNA glycosylase; InterPro IPR003180; KEGG: sli:Slin_0319 DNA-3-methyladenine glycosylase; PFAM: Methylpurine-DNA glycosylase (MPG); PRIAM: DNA-3-methyladenine glycosylase II; SPTR: 3-methyladenine DNA glycosylase; TIGRFAM: Methylpurine-DNA glycosylase (MPG); capsular polysaccharide biosynthesis protein 5926375..5927106 Runella slithyformis DSM 19594 10873659 YP_004658543.1 CDS Runsl_5109 NC_015703.1 5927269 5927874 R PFAM: Methylpurine-DNA glycosylase (MPG); TIGRFAM: DNA-3-methyladenine glycosylase (3mg); KEGG: sli:Slin_3865 hypothetical protein; SPTR: uncharacterized protein; 3-methyladenine DNA glycosylase complement(5927269..5927874) Runella slithyformis DSM 19594 10873660 YP_004658544.1 CDS Runsl_5110 NC_015703.1 5928025 5930187 D COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001:IPR001650:IPR000330; KEGG: sli:Slin_6180 SNF2-related protein; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: SNF2-related protein; hypothetical protein 5928025..5930187 Runella slithyformis DSM 19594 10873661 YP_004658545.1 CDS Runsl_5111 NC_015703.1 5930212 5933157 R PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR003313:IPR000005; KEGG: dfe:Dfer_5280 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; AraC protein, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; SNF2-like protein complement(5930212..5933157) Runella slithyformis DSM 19594 10873662 YP_004658546.1 CDS Runsl_5112 NC_015703.1 5933479 5934321 D PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: sli:Slin_4403 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Aspartate transaminase; SPTR: Aminotransferase class I and II; AraC family transcriptional regulator 5933479..5934321 Runella slithyformis DSM 19594 10873663 YP_004658547.1 CDS Runsl_5113 NC_015703.1 5934470 5935687 R PFAM: Aminotransferase class I and II; COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; InterPro IPR014048; KEGG: cly:Celly_1566 methylated-DNA/protein-cysteinemethyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; SPTR: Methylated-DNA--protein-cysteine S-methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; aspartate transaminase complement(5934470..5935687) Runella slithyformis DSM 19594 10873664 YP_004658548.1 CDS Runsl_5114 NC_015703.1 5935705 5936247 D PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase; COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: dfe:Dfer_5434 beta-Ig-H3/fasciclin; PFAM: FAS1 domain; SMART: FAS1 domain; SPTR: Beta-Ig-H3/fasciclin; methylated-DNA--protein-cysteine methyltransferase 5935705..5936247 Runella slithyformis DSM 19594 10873665 YP_004658549.1 CDS Runsl_5115 NC_015703.1 5936400 5936948 R PFAM: Fasciclin domain; KEGG: nve:NEMVE_v1g224714 hypothetical protein; SPTR: Hemopexin repeats containing protein; beta-Ig-H3/fasciclin complement(5936400..5936948) Runella slithyformis DSM 19594 10873666 YP_004658550.1 CDS Runsl_5116 NC_015703.1 5937417 5938331 R InterPro IPR001434; KEGG: sli:Slin_0177 hypothetical protein; PFAM: Protein of unknown function DUF11; SPTR: Conserved repeat domain protein; TIGRFAM: Protein of unknown function DUF11; hypothetical protein complement(5937417..5938331) Runella slithyformis DSM 19594 10873667 YP_004658551.1 CDS Runsl_5117 NC_015703.1 5938388 5939635 R PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain; InterPro IPR003343:IPR010221:IPR003367; KEGG: cpi:Cpin_3623 outer membrane adhesin like protein; SMART: Bacterial Ig-like, group 2; SPTR: Outer membrane adhesin like protein; TIGRFAM: VCBS repeat domain; hypothetical protein complement(5938388..5939635) Runella slithyformis DSM 19594 10873668 YP_004658552.1 CDS Runsl_5118 NC_015703.1 5939712 5949146 R InterPro IPR003367; KEGG: dfe:Dfer_0535 hypothetical protein; SPTR: Probable aggregation factor core protein MAFp3, isoform C; outer membrane adhesin-like protein complement(5939712..5949146) Runella slithyformis DSM 19594 10873669 YP_004658553.1 CDS Runsl_5119 NC_015703.1 5949351 5955887 R KEGG: dfe:Dfer_2338 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5949351..5955887) Runella slithyformis DSM 19594 10873670 YP_004658554.1 CDS Runsl_5120 NC_015703.1 5956057 5956794 R PFAM: C1q domain; hypothetical protein complement(5956057..5956794) Runella slithyformis DSM 19594 10873671 YP_004658555.1 CDS Runsl_5121 NC_015703.1 5956861 5957643 R COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_6424 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; hypothetical protein complement(5956861..5957643) Runella slithyformis DSM 19594 10873672 YP_004658556.1 CDS Runsl_5122 NC_015703.1 5958318 5959130 D PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: fjo:Fjoh_1442 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: Integral membrane sensor signal transduction histidine kinase; LytTR family two component transcriptional regulator 5958318..5959130 Runella slithyformis DSM 19594 10873673 YP_004658557.1 CDS Runsl_5123 NC_015703.1 5959178 5961106 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: fjo:Fjoh_1442 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: Integral membrane sensor signal transduction histidine kinase; histidine kinase 5959178..5961106 Runella slithyformis DSM 19594 10873674 YP_004658558.1 CDS Runsl_5124 NC_015703.1 5961164 5963143 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; histidine kinase 5961164..5963143 Runella slithyformis DSM 19594 10873675 YP_004658559.1 CDS Runsl_5125 NC_015703.1 5963516 5964244 R PFAM: Biopterin-dependent aromatic amino acid hydroxylase; TIGRFAM: phenylalanine-4-hydroxylase, monomeric form; COGs: COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins; InterPro IPR005956:IPR004360; KEGG: sli:Slin_6320 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; PRIAM: 4-hydroxyphenylpyruvate dioxygenase; SPTR: 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; phenylalanine 4-monooxygenase complement(5963516..5964244) Runella slithyformis DSM 19594 10873678 YP_004658560.1 CDS Runsl_5126 NC_015703.1 5964335 5965468 R PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR005914:IPR000873; KEGG: sli:Slin_4421 acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Acetoacetate--CoA ligase; SPTR: Acetoacetyl-CoA synthase; TIGRFAM: Acetoacetyl-CoA synthase; 4-hydroxyphenylpyruvate dioxygenase complement(5964335..5965468) Runella slithyformis DSM 19594 10873679 YP_004658563.1 CDS Runsl_5129 NC_015703.1 5969655 5970848 D PFAM: Glycosyl transferases group 1; KEGG: lby:Lbys_2798 hypothetical protein; SPTR: uncharacterized protein; group 1 glycosyl transferase 5969655..5970848 Runella slithyformis DSM 19594 10873682 YP_004658564.1 CDS Runsl_5130 NC_015703.1 5970893 5972266 R COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_4648 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; hypothetical protein complement(5970893..5972266) Runella slithyformis DSM 19594 10873683 YP_004658565.1 CDS Runsl_5131 NC_015703.1 5972301 5974574 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TonB-dependent receptor complement(5972301..5974574) Runella slithyformis DSM 19594 10873684 YP_004658566.1 CDS Runsl_5132 NC_015703.1 5974779 5974928 R InterPro IPR002516; KEGG: mpl:Mpal_2194 glycosyl transferase 11; PFAM: Glycosyl transferase, family 11; SPTR: Glycosyl transferase 11; hypothetical protein complement(5974779..5974928) Runella slithyformis DSM 19594 10873685 YP_004658567.1 CDS Runsl_5133 NC_015703.1 5975103 5975966 D PFAM: Glycosyl transferase 11; InterPro IPR003088; KEGG: pfo:Pfl01_1738 cytochrome c, class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c, class I; glycosyl transferase family protein 5975103..5975966 Runella slithyformis DSM 19594 10873686 YP_004658568.1 CDS Runsl_5134 NC_015703.1 5975971 5976828 R PFAM: Cytochrome c; InterPro IPR012577; KEGG: sli:Slin_0395 NIPSNAP family containing protein; PFAM: NIPSNAP; SPTR: NIPSNAP family containing protein; cytochrome c class I complement(5975971..5976828) Runella slithyformis DSM 19594 10873687 YP_004658569.1 CDS Runsl_5135 NC_015703.1 5976968 5977699 R PFAM: NIPSNAP; COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129; KEGG: sli:Slin_1715 glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase; SPTR: Glycerophosphoryl diester phosphodiesterase; NIPSNAP family containing protein complement(5976968..5977699) Runella slithyformis DSM 19594 10873688 YP_004658570.1 CDS Runsl_5136 NC_015703.1 5977751 5978605 D PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: mrd:Mrad2831_3735 hypothetical protein; SPTR: uncharacterized protein; glycerophosphoryl diester phosphodiesterase 5977751..5978605 Runella slithyformis DSM 19594 10873689 YP_004658571.1 CDS Runsl_5137 NC_015703.1 5978660 5979028 D InterPro IPR003675; KEGG: cbh:CLC_0981 CAAX amino terminal protease; PFAM: Abortive infection protein; SPTR: Predicted metal-dependent membrane protease; hypothetical protein 5978660..5979028 Runella slithyformis DSM 19594 10873690 YP_004658572.1 CDS Runsl_5138 NC_015703.1 5979077 5979826 R PFAM: CAAX amino terminal protease; InterPro IPR002559; KEGG: app:CAP2UW1_1881 transposase IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase IS4 family protein; abortive infection protein complement(5979077..5979826) Runella slithyformis DSM 19594 10873691 YP_004658573.1 CDS Runsl_5139 NC_015703.1 5980316 5981332 R PFAM: Transposase DDE domain; InterPro IPR003675; KEGG: slg:SLGD_00275 hypothetical protein; PFAM: Abortive infection protein; SPTR: uncharacterized protein; transposase IS4 family protein complement(5980316..5981332) Runella slithyformis DSM 19594 10873692 YP_004658574.1 CDS Runsl_5140 NC_015703.1 5981669 5982562 R PFAM: CAAX amino terminal protease; abortive infection protein complement(5981669..5982562) Runella slithyformis DSM 19594 10873693 YP_004658575.1 CDS Runsl_5141 NC_015703.1 5982820 5983074 R COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated; hypothetical protein complement(5982820..5983074) Runella slithyformis DSM 19594 10873694 YP_004658576.1 CDS Runsl_5142 NC_015703.1 5983482 5984493 D PFAM: Rhodopirellula transposase; 'Paired box' domain; Prodigal; manually curated; transposase join(5983482..5983946,5983948..5984493) Runella slithyformis DSM 19594 10873695 YP_004658577.1 CDS Runsl_5144 NC_015703.1 5984707 5985147 R PFAM: Acetyltransferase (GNAT) family; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR008030; KEGG: sli:Slin_3209 hypothetical protein; SPTR: uncharacterized protein; N-acetyltransferase GCN5 complement(5984707..5985147) Runella slithyformis DSM 19594 10873697 YP_004658578.1 CDS Runsl_5145 NC_015703.1 5985198 5985845 R hypothetical protein complement(5985198..5985845) Runella slithyformis DSM 19594 10873698 YP_004658579.1 CDS Runsl_5146 NC_015703.1 5985861 5985998 R COGs: COG1285 membrane protein; InterPro IPR003416; KEGG: dfe:Dfer_2880 MgtC/SapB transporter; PFAM: MgtC/SapB transporter; SPTR: MgtC/SapB transporter; hypothetical protein complement(5985861..5985998) Runella slithyformis DSM 19594 10873699 YP_004658580.1 CDS Runsl_5147 NC_015703.1 5986029 5986661 R PFAM: MgtC family; COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR007865:IPR000994; KEGG: dfe:Dfer_2876 peptidase M24; PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; SPTR: Peptidase M24; MgtC/SapB transporter complement(5986029..5986661) Runella slithyformis DSM 19594 10873700 YP_004658581.1 CDS Runsl_5148 NC_015703.1 5986723 5988012 R PFAM: Aminopeptidase P, N-terminal domain; Metallopeptidase M24; COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000994; KEGG: osp:Odosp_3645 peptidase M24; PFAM: Peptidase M24, structural domain; PRIAM: Xaa-Pro aminopeptidase; SPTR: Xaa-Pro aminopeptidase; peptidase M24 complement(5986723..5988012) Runella slithyformis DSM 19594 10873701 YP_004658582.1 CDS Runsl_5149 NC_015703.1 5988107 5989492 R PFAM: Aminopeptidase P, N-terminal domain; Metallopeptidase M24; COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: sli:Slin_3456 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Peptidase S8 and S53 subtilisin kexin sedolisin; Xaa-Pro aminopeptidase complement(5988107..5989492) Runella slithyformis DSM 19594 10873702 YP_004658583.1 CDS Runsl_5150 NC_015703.1 5989579 5991126 D PFAM: Subtilase; Prodigal; manually curated; peptidase S8 and S53 subtilisin kexin sedolisin 5989579..5991126 Runella slithyformis DSM 19594 10873703 YP_004658584.1 CDS Runsl_5152 NC_015703.1 5991848 5992315 R KEGG: sli:Slin_5166 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(5991848..5992315) Runella slithyformis DSM 19594 10873705 YP_004658585.1 CDS Runsl_5153 NC_015703.1 5992367 5992690 D COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR002646:IPR006674; KEGG: dfe:Dfer_2415 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; PFAM: Polynucleotide adenylyltransferase region; Metal-dependent phosphohydrolase, HD region, subdomain; SPTR: Polynucleotide adenylyltransferase/metal dependent phosphohydrolase; hypothetical protein 5992367..5992690 Runella slithyformis DSM 19594 10873706 YP_004658586.1 CDS Runsl_5154 NC_015703.1 5992697 5994112 R PFAM: HD domain; Poly A polymerase head domain; InterPro IPR018914; KEGG: sli:Slin_4879 hypothetical protein; PFAM: Protein of unknown function DUF2480; SPTR: uncharacterized protein; polynucleotide adenylyltransferase complement(5992697..5994112) Runella slithyformis DSM 19594 10873707 YP_004658587.1 CDS Runsl_5155 NC_015703.1 5994304 5994834 D PFAM: Protein of unknown function (DUF2480); COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891; KEGG: sli:Slin_3023 hydroxymethylglutaryl-CoA lyase; PFAM: Pyruvate carboxyltransferase; PRIAM: Hydroxymethylglutaryl-CoA lyase; SPTR: Hydroxymethylglutaryl-CoA lyase; hypothetical protein 5994304..5994834 Runella slithyformis DSM 19594 10873708 YP_004658588.1 CDS Runsl_5156 NC_015703.1 5994883 5995728 R PFAM: HMGL-like; InterPro IPR003749; KEGG: cao:Celal_2741 thiamines protein; PFAM: ThiamineS; SPTR: ThiamineS protein; hydroxymethylglutaryl-CoA lyase complement(5994883..5995728) Runella slithyformis DSM 19594 10873709 YP_004658589.1 CDS Runsl_5157 NC_015703.1 5995828 5996070 R PFAM: ThiS family; TIGRFAM: molybdopterin converting factor, subunit 1, non-archaeal; COGs: COG1401 GTPase subunit of restriction endonuclease; InterPro IPR011704; KEGG: sli:Slin_4510 ATPase AAA; PFAM: ATPase associated with various cellular activities, AAA-5; SPTR: ATPase associated with various cellular activities AAA_5; sulfur transfer protein ThiS complement(5995828..5996070) Runella slithyformis DSM 19594 10873710 YP_004658590.1 CDS Runsl_5158 NC_015703.1 5996432 5998024 R PFAM: AAA domain (dynein-related subfamily); ATPase complement(5996432..5998024) Runella slithyformis DSM 19594 10873711 YP_004658591.1 CDS Runsl_5159 NC_015703.1 5998310 5998765 D hypothetical protein 5998310..5998765 Runella slithyformis DSM 19594 10873712 YP_004658592.1 CDS Runsl_5160 NC_015703.1 5999708 6000079 D hypothetical protein 5999708..6000079 Runella slithyformis DSM 19594 10873713 YP_004658593.1 CDS Runsl_5161 NC_015703.1 6000327 6001010 R PFAM: DJ-1/PfpI family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: sli:Slin_5976 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: Response regulator receiver protein; isoprenoid biosynthesis protein with amidotransferase-like domain complement(6000327..6001010) Runella slithyformis DSM 19594 10873715 YP_004658594.1 CDS Runsl_5162 NC_015703.1 6001486 6002406 D PFAM: LytTr DNA-binding domain; InterPro IPR002591; KEGG: dfe:Dfer_3007 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase; response regulator receiver protein 6001486..6002406 Runella slithyformis DSM 19594 10873716 YP_004658595.1 CDS Runsl_5163 NC_015703.1 6002514 6004157 D PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase; InterPro IPR019734:IPR001440:IPR013105; KEGG: sli:Slin_1475 hypothetical protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; type I phosphodiesterase/nucleotide pyrophosphatase 6002514..6004157 Runella slithyformis DSM 19594 10873717 YP_004658596.1 CDS Runsl_5164 NC_015703.1 6004295 6005701 D PFAM: Tetratricopeptide repeat; COGs: COG0366 Glycosidase; InterPro IPR006589:IPR015171:IPR006047:IPR019492; KEGG: sli:Slin_2883 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic region; Cyclomaltodextrinase, N-terminal; Cyclo-malto-dextrinase, C-terminal; PRIAM: Cyclomaltodextrinase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; SPTR: Alpha amylase catalytic region; hypothetical protein 6004295..6005701 Runella slithyformis DSM 19594 10873718 YP_004658597.1 CDS Runsl_5165 NC_015703.1 6005724 6007598 R PFAM: Cyclomaltodextrinase, N-terminal; Alpha amylase, catalytic domain; Cyclo-malto-dextrinase C-terminal domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: dfe:Dfer_5280 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; cyclomaltodextrinase complement(6005724..6007598) Runella slithyformis DSM 19594 10873719 YP_004658598.1 CDS Runsl_5166 NC_015703.1 6007689 6008558 R PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR006402:IPR005834; KEGG: dfe:Dfer_2943 HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; manually curated; AraC family transcriptional regulator complement(6007689..6008558) Runella slithyformis DSM 19594 10873720 YP_004658599.1 CDS Runsl_5167 NC_015703.1 6008723 6009397 D PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; InterPro IPR004360; KEGG: sli:Slin_3076 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; HAD superfamily hydrolase 6008723..6009397 Runella slithyformis DSM 19594 10873721 YP_004658600.1 CDS Runsl_5168 NC_015703.1 6009419 6009808 D PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; InterPro IPR011701; KEGG: sli:Slin_3423 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; Glyoxalase/bleomycin resistance protein/dioxygenase 6009419..6009808 Runella slithyformis DSM 19594 10873722 YP_004658601.1 CDS Runsl_5169 NC_015703.1 6009884 6011041 D PFAM: Major Facilitator Superfamily; KEGG: chu:CHU_2843 hypothetical protein; SPTR: uncharacterized protein; major facilitator superfamily protein 6009884..6011041 Runella slithyformis DSM 19594 10873723 YP_004658602.1 CDS Runsl_5170 NC_015703.1 6011111 6011917 D InterPro IPR002482:IPR018392; KEGG: dfe:Dfer_5051 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Peptidoglycan-binding LysM; hypothetical protein 6011111..6011917 Runella slithyformis DSM 19594 10873724 YP_004658603.1 CDS Runsl_5171 NC_015703.1 6011914 6012975 D PFAM: LysM domain; COGs: COG1597 Sphingosine kinase; InterPro IPR001206:IPR005218; KEGG: sli:Slin_0403 diacylglycerol kinase; PFAM: Diacylglycerol kinase, catalytic region; SMART: Diacylglycerol kinase, catalytic region; SPTR: Diacylglycerol kinase catalytic region; TIGRFAM: Conserved hypothetical protein CHP00147; peptidoglycan-binding lysin domain-containing protein 6011914..6012975 Runella slithyformis DSM 19594 10873725 YP_004658604.1 CDS Runsl_5172 NC_015703.1 6012972 6013859 D PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: lipid kinase, YegS/Rv2252/BmrU family; COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); InterPro IPR010227:IPR001750; KEGG: sli:Slin_4908 proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: Proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: NADH-quinone oxidoreductase, chain M; hypothetical protein 6012972..6013859 Runella slithyformis DSM 19594 10873726 YP_004658605.1 CDS Runsl_5173 NC_015703.1 6013881 6015464 R PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR003945:IPR001516:IPR001750; KEGG: sli:Slin_4909 proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; PRIAM: NADH dehydrogenase (quinone); SPTR: Proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; proton-translocating NADH-quinone oxidoreductase subunit M complement(6013881..6015464) Runella slithyformis DSM 19594 10873727 YP_004658606.1 CDS Runsl_5174 NC_015703.1 6015512 6017491 R PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: sli:Slin_2494 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; proton-translocating NADH-quinone oxidoreductase subunit L complement(6015512..6017491) Runella slithyformis DSM 19594 10873728 YP_004658607.1 CDS Runsl_5175 NC_015703.1 6017577 6018419 R PFAM: alpha/beta hydrolase fold; KEGG: sli:Slin_0364 hypothetical protein; SPTR: uncharacterized protein; alpha/beta hydrolase complement(6017577..6018419) Runella slithyformis DSM 19594 10873729 YP_004658608.1 CDS Runsl_5176 NC_015703.1 6018515 6020392 D InterPro IPR000835; KEGG: dfe:Dfer_2423 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; hypothetical protein 6018515..6020392 Runella slithyformis DSM 19594 10873730 YP_004658609.1 CDS Runsl_5177 NC_015703.1 6020466 6020921 D PFAM: MarR family; COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: dfe:Dfer_2422 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YceI family protein; regulatory protein MarR 6020466..6020921 Runella slithyformis DSM 19594 10873731 YP_004658610.1 CDS Runsl_5178 NC_015703.1 6021030 6021650 D PFAM: YceI-like domain; COGs: COG4642 conserved hypothetical protein; InterPro IPR003409; KEGG: sli:Slin_6615 hypothetical protein; PFAM: MORN motif; SMART: MORN motif; SPTR: MORN repeat-containing protein; hypothetical protein 6021030..6021650 Runella slithyformis DSM 19594 10873732 YP_004658611.1 CDS Runsl_5179 NC_015703.1 6021762 6022919 D PFAM: Peptidase M48; MORN repeat; COGs: COG1801 conserved hypothetical protein; InterPro IPR002763; KEGG: sli:Slin_5530 hypothetical protein; PFAM: Protein of unknown function DUF72; SPTR: uncharacterized protein; MORN repeat-containing protein 6021762..6022919 Runella slithyformis DSM 19594 10873733 YP_004658612.1 CDS Runsl_5180 NC_015703.1 6022952 6023866 D PFAM: Protein of unknown function DUF72; InterPro IPR017941; KEGG: sli:Slin_4885 Rieske (2Fe-2S) iron-sulphur domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Rieske (2Fe-2S) iron-sulphur domain protein; hypothetical protein 6022952..6023866 Runella slithyformis DSM 19594 10873734 YP_004658613.1 CDS Runsl_5181 NC_015703.1 6024015 6024518 D PFAM: Rieske [2Fe-2S] domain; KEGG: dfe:Dfer_4137 hypothetical protein; SPTR: uncharacterized protein; Rieske (2Fe-2S) domain-containing protein 6024015..6024518 Runella slithyformis DSM 19594 10873735 YP_004658614.1 CDS Runsl_5182 NC_015703.1 6024589 6025491 D InterPro IPR007372; KEGG: dfe:Dfer_4138 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YceI family protein; hypothetical protein 6024589..6025491 Runella slithyformis DSM 19594 10873736 YP_004658615.1 CDS Runsl_5183 NC_015703.1 6025541 6026098 D PFAM: YceI-like domain; InterPro IPR010496; KEGG: dfe:Dfer_4583 protein of unknown function DUF1080; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; hypothetical protein 6025541..6026098 Runella slithyformis DSM 19594 10873737 YP_004658616.1 CDS Runsl_5184 NC_015703.1 6026222 6026917 D PFAM: Domain of Unknown Function (DUF1080); COGs: COG0623 Enoyl-(acyl-carrier-protein); KEGG: lby:Lbys_2165 enoyl-(acyl-carrier-protein) reductase (NADH); PRIAM: Enoyl-[acyl-carrier-protein] reductase (NADH); SPTR: Enoyl-[acyl-carrier-protein] reductase [NADH]; hypothetical protein 6026222..6026917 Runella slithyformis DSM 19594 10873738 YP_004658617.1 CDS Runsl_5185 NC_015703.1 6026987 6027793 R COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_3751 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; enoyl-ACP reductase complement(6026987..6027793) Runella slithyformis DSM 19594 10873739 YP_004658618.1 CDS Runsl_5186 NC_015703.1 6027924 6028583 R COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR004634:IPR004635:IPR002142; KEGG: dfe:Dfer_2800 signal peptide peptidase SppA, 67K type; PFAM: Peptidase S49; SPTR: Signal peptide peptidase SppA, 67K type; TIGRFAM: Peptidase S49, protease IV; Peptidase S49, SppA; ABC transporter complement(6027924..6028583) Runella slithyformis DSM 19594 10873740 YP_004658619.1 CDS Runsl_5187 NC_015703.1 6029162 6030919 D PFAM: Peptidase S49; TIGRFAM: signal peptide peptidase SppA, 36K type; signal peptide peptidase SppA, 67K type; SPTR: Transposase IS4 family protein; signal peptide peptidase SppA, 67K type 6029162..6030919 Runella slithyformis DSM 19594 10873741 YP_004658620.1 CDS Runsl_5188 NC_015703.1 6031028 6032374 D hypothetical protein 6031028..6032374 Runella slithyformis DSM 19594 10873742 YP_004658621.1 CDS Runsl_5189 NC_015703.1 6032662 6032994 D COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: cao:Celal_2798 transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase; hypothetical protein 6032662..6032994 Runella slithyformis DSM 19594 10873744 YP_004658622.1 CDS Runsl_5190 NC_015703.1 6033004 6033987 D PFAM: Transposase; transposase IS204/IS1001/IS1096/IS1165 family protein 6033004..6033987 Runella slithyformis DSM 19594 10873745 YP_004658623.1 CDS Runsl_5191 NC_015703.1 6034159 6034377 D COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594:IPR011712; KEGG: sli:Slin_6208 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; SMART: ATP-binding region, ATPase-like; SPTR: Two-component system sensor histidine kinase; hypothetical protein 6034159..6034377 Runella slithyformis DSM 19594 10873746 YP_004658624.1 CDS Runsl_5192 NC_015703.1 6034406 6035668 D PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: rca:Rcas_1142 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SPTR: Two-component system response regulator, LuxR family; signal transduction histidine kinase 6034406..6035668 Runella slithyformis DSM 19594 10873747 YP_004658625.1 CDS Runsl_5193 NC_015703.1 6035750 6036391 D PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; KEGG: pam:PANA_2363 hypothetical protein; SPTR: uncharacterized protein; LuxR family transcriptional regulator 6035750..6036391 Runella slithyformis DSM 19594 10873748 YP_004658626.1 CDS Runsl_5194 NC_015703.1 6036401 6037156 R COGs: COG0515 Serine/threonine protein kinase; InterPro IPR020635:IPR002290:IPR017442; KEGG: sli:Slin_2968 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; PRIAM: Calcium/calmodulin-dependent protein kinase; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, subgroup, catalytic domain; SPTR: Serine/threonine protein kinase; hypothetical protein complement(6036401..6037156) Runella slithyformis DSM 19594 10873749 YP_004658627.1 CDS Runsl_5195 NC_015703.1 6037170 6038681 R PFAM: Protein kinase domain; KEGG: sli:Slin_3310 hypothetical protein; SPTR: uncharacterized protein; serine/threonine protein kinase complement(6037170..6038681) Runella slithyformis DSM 19594 10873750 YP_004658628.1 CDS Runsl_5196 NC_015703.1 6038699 6039502 R hypothetical protein complement(6038699..6039502) Runella slithyformis DSM 19594 10873751 YP_004658629.1 CDS Runsl_5197 NC_015703.1 6039509 6039880 R hypothetical protein complement(6039509..6039880) Runella slithyformis DSM 19594 10873752 YP_004658630.1 CDS Runsl_5198 NC_015703.1 6040009 6040101 D KEGG: chu:CHU_2528 hypothetical protein; SPTR: CHU large protein; uncharacterized; hypothetical protein 6040009..6040101 Runella slithyformis DSM 19594 10873753 YP_004658631.1 CDS Runsl_5199 NC_015703.1 6040091 6043687 D KEGG: dal:Dalk_5199 hypothetical protein; SPTR: Ribonuclease, Rne/Rng family protein; hypothetical protein 6040091..6043687 Runella slithyformis DSM 19594 10873754 YP_004658632.1 CDS Runsl_5200 NC_015703.1 6043684 6045468 D COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: aba:Acid345_4155 transcriptional regulatory protein-like; SPTR: WD40-like Beta Propeller; hypothetical protein 6043684..6045468 Runella slithyformis DSM 19594 10873755 YP_004658633.1 CDS Runsl_5201 NC_015703.1 6045530 6046507 D PFAM: WD40-like Beta Propeller Repeat; KEGG: dfe:Dfer_3581 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6045530..6046507 Runella slithyformis DSM 19594 10873756 YP_004658634.1 CDS Runsl_5202 NC_015703.1 6046540 6047679 D COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: dfe:Dfer_3582 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; hypothetical protein 6046540..6047679 Runella slithyformis DSM 19594 10873757 YP_004658635.1 CDS Runsl_5203 NC_015703.1 6047679 6048998 D PFAM: OmpA family; InterPro IPR011647; KEGG: cyn:Cyan7425_4935 KWG repeat-containing protein; PFAM: KWG Leptospira; SPTR: KWG repeat domain protein; OmpA/MotB domain-containing protein 6047679..6048998 Runella slithyformis DSM 19594 10873758 YP_004658636.1 CDS Runsl_5204 NC_015703.1 6049038 6050066 D PFAM: KWG Leptospira; InterPro IPR011600; KEGG: sli:Slin_2969 peptidase C14 caspase catalytic subunit P20; PFAM: Peptidase C14, caspase catalytic; SPTR: Peptidase C14 caspase catalytic subunit p20; KWG repeat-containing protein 6049038..6050066 Runella slithyformis DSM 19594 10873759 YP_004658637.1 CDS Runsl_5205 NC_015703.1 6050078 6050953 R PFAM: Caspase domain; COGs: COG0631 Serine/threonine protein phosphatase; InterPro IPR001932; KEGG: pdi:BDI_1037 serine/threonine phosphatase; SMART: Protein phosphatase 2C-related; SPTR: uncharacterized protein; peptidase C14 caspase catalytic subunit p20 complement(6050078..6050953) Runella slithyformis DSM 19594 10873760 YP_004658638.1 CDS Runsl_5206 NC_015703.1 6050919 6052508 R PFAM: Protein phosphatase 2C; InterPro IPR000253; KEGG: pdi:BDI_1036 hypothetical protein; PFAM: Forkhead-associated; SPTR: FHA domain protein; Ser/Thr phosphatase complement(6050919..6052508) Runella slithyformis DSM 19594 10873761 YP_004658639.1 CDS Runsl_5207 NC_015703.1 6052517 6053215 R PFAM: FHA domain; KEGG: sli:Slin_2972 hypothetical protein; SPTR: uncharacterized protein; forkhead-associated protein complement(6052517..6053215) Runella slithyformis DSM 19594 10873762 YP_004658640.1 CDS Runsl_5208 NC_015703.1 6053230 6054618 R InterPro IPR000253; KEGG: pdi:BDI_1034 ABC transporter ATP-binding protein; PFAM: Forkhead-associated; SMART: Forkhead-associated; SPTR: uncharacterized protein; hypothetical protein complement(6053230..6054618) Runella slithyformis DSM 19594 10873763 YP_004658641.1 CDS Runsl_5209 NC_015703.1 6054638 6055372 R PFAM: FHA domain; InterPro IPR000601:IPR002035; KEGG: sli:Slin_1773 von Willebrand factor type A; PFAM: PKD; von Willebrand factor, type A; SMART: von Willebrand factor, type A; PKD; SPTR: von Willebrand factor type A; forkhead-associated protein complement(6054638..6055372) Runella slithyformis DSM 19594 10873764 YP_004658642.1 CDS Runsl_5210 NC_015703.1 6055401 6056975 R PFAM: von Willebrand factor type A domain; PKD domain; COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterPro IPR003593:IPR003959:IPR013093:IPR019489; KEGG: dfe:Dfer_3576 ATPase AAA-2 domain protein; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent protease; PKD domain-containing protein complement(6055401..6056975) Runella slithyformis DSM 19594 10873765 YP_004658643.1 CDS Runsl_5211 NC_015703.1 6057176 6059680 D PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ATPase associated with various cellular activities (AAA); ATPase AAA 6057176..6059680 Runella slithyformis DSM 19594 10873766 YP_004658644.1 CDS Runsl_5212 NC_015703.1 6059685 6060629 D KEGG: bfr:BF1956 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6059685..6060629 Runella slithyformis DSM 19594 10873767 YP_004658645.1 CDS Runsl_5213 NC_015703.1 6060683 6061138 D KEGG: dfe:Dfer_3586 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6060683..6061138 Runella slithyformis DSM 19594 10873768 YP_004658646.1 CDS Runsl_5214 NC_015703.1 6061192 6062565 D PFAM: Phage tail sheath protein; KEGG: cpi:Cpin_4871 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6061192..6062565 Runella slithyformis DSM 19594 10873769 YP_004658647.1 CDS Runsl_5215 NC_015703.1 6062606 6062998 D KEGG: lbj:LBJ_0272 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6062606..6062998 Runella slithyformis DSM 19594 10873770 YP_004658648.1 CDS Runsl_5216 NC_015703.1 6063102 6064139 D COGs: COG3501 conserved hypothetical protein; InterPro IPR006533; KEGG: cpi:Cpin_5894 rhs element Vgr protein; PFAM: Rhs element Vgr protein; SPTR: Rhs element Vgr protein; TIGRFAM: Rhs element Vgr protein; hypothetical protein 6063102..6064139 Runella slithyformis DSM 19594 10873771 YP_004658649.1 CDS Runsl_5217 NC_015703.1 6064212 6066005 D PFAM: Phage late control gene D protein (GPD); Phage-related baseplate assembly protein; Rhs element Vgr protein 6064212..6066005 Runella slithyformis DSM 19594 10873772 YP_004658650.1 CDS Runsl_5218 NC_015703.1 6066018 6066536 D InterPro IPR007048; KEGG: cao:Celal_3741 gpW/GP25 family protein; PFAM: GPW/gp25; SPTR: GpW/GP25 family protein; hypothetical protein 6066018..6066536 Runella slithyformis DSM 19594 10873773 YP_004658651.1 CDS Runsl_5219 NC_015703.1 6066551 6067174 D PFAM: Gene 25-like lysozyme; KEGG: cpi:Cpin_2305 hypothetical protein; SPTR: uncharacterized protein; GPW/gp25 family protein 6066551..6067174 Runella slithyformis DSM 19594 10873774 YP_004658652.1 CDS Runsl_5220 NC_015703.1 6067201 6069024 D KEGG: cpi:Cpin_2308 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6067201..6069024 Runella slithyformis DSM 19594 10873775 YP_004658653.1 CDS Runsl_5221 NC_015703.1 6069037 6070038 D KEGG: dfe:Dfer_3591 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6069037..6070038 Runella slithyformis DSM 19594 10873776 YP_004658654.1 CDS Runsl_5222 NC_015703.1 6070061 6070909 D KEGG: sli:Slin_4112 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6070061..6070909 Runella slithyformis DSM 19594 10873777 YP_004658655.1 CDS Runsl_5223 NC_015703.1 6070915 6072027 D PFAM: Bacterial protein of unknown function (DUF876); InterPro IPR008727; KEGG: cpi:Cpin_3928 PaaR repeat-containing protein; PFAM: PAAR motif; SPTR: PAAR repeat-containing protein; hypothetical protein 6070915..6072027 Runella slithyformis DSM 19594 10873778 YP_004658656.1 CDS Runsl_5224 NC_015703.1 6072044 6072343 D PFAM: PAAR motif; PAAR repeat-containing protein 6072044..6072343 Runella slithyformis DSM 19594 10873779 YP_004658657.1 CDS Runsl_5225 NC_015703.1 6072383 6072862 D hypothetical protein 6072383..6072862 Runella slithyformis DSM 19594 10873780 YP_004658658.1 CDS Runsl_5226 NC_015703.1 6072879 6073358 D InterPro IPR001763; KEGG: sli:Slin_1457 rhodanese; SMART: Rhodanese-like; SPTR: Rhodanese domain-containing protein; manually curated; hypothetical protein 6072879..6073358 Runella slithyformis DSM 19594 10873781 YP_004658659.1 CDS Runsl_5227 NC_015703.1 6073390 6073692 R PFAM: Rhodanese-like domain; Prodigal; manually curated; rhodanese-like protein complement(6073390..6073692) Runella slithyformis DSM 19594 10873782 YP_004658660.1 CDS Runsl_5229 NC_015703.1 6075169 6075573 R InterPro IPR007484; KEGG: dfe:Dfer_3904 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28; hypothetical protein complement(6075169..6075573) Runella slithyformis DSM 19594 10873784 YP_004658661.1 CDS Runsl_5230 NC_015703.1 6075603 6076604 R PFAM: Peptidase M28; COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: psa:PST_4158 sugar acetylase; PFAM: Acyltransferase 3; SPTR: Sugar acetylase; peptidase M28 complement(6075603..6076604) Runella slithyformis DSM 19594 10873785 YP_004658662.1 CDS Runsl_5231 NC_015703.1 6076724 6077767 R PFAM: Acyltransferase; KEGG: sli:Slin_5460 hypothetical protein; SPTR: uncharacterized protein; acyltransferase complement(6076724..6077767) Runella slithyformis DSM 19594 10873786 YP_004658663.1 CDS Runsl_5232 NC_015703.1 6078170 6079189 R InterPro IPR006644:IPR013529; KEGG: dfe:Dfer_3550 dystroglycan-type cadherin domain protein; PFAM: Glycoside hydrolase, family 42, N-terminal; SMART: Dystroglycan-type cadherin-like; SPTR: Dystroglycan-type cadherin domain protein; hypothetical protein complement(6078170..6079189) Runella slithyformis DSM 19594 10873787 YP_004658664.1 CDS Runsl_5233 NC_015703.1 6079347 6082442 R PFAM: Beta-galactosidase; InterPro IPR013529; KEGG: dfe:Dfer_3550 dystroglycan-type cadherin domain protein; PFAM: Glycoside hydrolase, family 42, N-terminal; SPTR: Dystroglycan-type cadherin domain protein; glycoside hydrolase complement(6079347..6082442) Runella slithyformis DSM 19594 10873788 YP_004658665.1 CDS Runsl_5234 NC_015703.1 6082452 6085007 R PFAM: Beta-galactosidase; Ig domain; glycoside hydrolase complement(6082452..6085007) Runella slithyformis DSM 19594 10873789 YP_004658666.1 CDS Runsl_5235 NC_015703.1 6085117 6085629 R COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR002818; KEGG: pjd:Pjdr2_0637 ThiJ/PfpI domain protein; PFAM: ThiJ/PfpI; SPTR: Transcriptional regulator, AraC family protein; hypothetical protein complement(6085117..6085629) Runella slithyformis DSM 19594 10873790 YP_004658667.1 CDS Runsl_5236 NC_015703.1 6085820 6086431 R PFAM: DJ-1/PfpI family; InterPro IPR000620; KEGG: cpi:Cpin_4054 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: uncharacterized protein; ThiJ/PfpI domain-containing protein complement(6085820..6086431) Runella slithyformis DSM 19594 10873791 YP_004658668.1 CDS Runsl_5237 NC_015703.1 6086580 6087497 R PFAM: EamA-like transporter family; COGs: COG1496 conserved hypothetical protein; InterPro IPR003730; KEGG: sli:Slin_3530 hypothetical protein; PFAM: Multi-copper polyphenol oxidoreductase, laccase; SPTR: uncharacterized protein; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; hypothetical protein complement(6086580..6087497) Runella slithyformis DSM 19594 10873792 YP_004658669.1 CDS Runsl_5238 NC_015703.1 6087572 6088321 R PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: uncharacterized protein, YfiH family; COGs: COG0461 Orotate phosphoribosyltransferase; HAMAP: Orotate phosphoribosyltransferase; InterPro IPR004467:IPR000836; KEGG: sli:Slin_1439 orotate phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; PRIAM: Orotate phosphoribosyltransferase; SPTR: Orotate phosphoribosyltransferase; TIGRFAM: Orotate phosphoribosyl transferase; multi-copper polyphenol oxidoreductase, laccase complement(6087572..6088321) Runella slithyformis DSM 19594 10873793 YP_004658670.1 CDS Runsl_5239 NC_015703.1 6088334 6088990 R PFAM: Phosphoribosyl transferase domain; TIGRFAM: orotate phosphoribosyltransferase; COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: sli:Slin_3549 UspA domain protein; PFAM: UspA; SPTR: UspA domain protein; orotate phosphoribosyltransferase complement(6088334..6088990) Runella slithyformis DSM 19594 10873794 YP_004658671.1 CDS Runsl_5240 NC_015703.1 6089091 6089903 R PFAM: Universal stress protein family; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR013973; KEGG: dfe:Dfer_5047 response regulator receiver protein; PFAM: PglZ domain; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; UspA domain-containing protein complement(6089091..6089903) Runella slithyformis DSM 19594 10873795 YP_004658672.1 CDS Runsl_5241 NC_015703.1 6090114 6091676 D PFAM: PglZ domain; Response regulator receiver domain; InterPro IPR012910; KEGG: dfe:Dfer_2367 hypothetical protein; PFAM: TonB-dependent receptor, plug; SPTR: uncharacterized protein; response regulator receiver protein 6090114..6091676 Runella slithyformis DSM 19594 10873796 YP_004658673.1 CDS Runsl_5242 NC_015703.1 6091799 6094180 R PFAM: TonB-dependent Receptor Plug Domain; KEGG: sli:Slin_2297 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug complement(6091799..6094180) Runella slithyformis DSM 19594 10873797 YP_004658674.1 CDS Runsl_5243 NC_015703.1 6094256 6094903 D COGs: COG2217 Cation transport ATPase; InterPro IPR008250:IPR005834; KEGG: dfe:Dfer_5325 copper-exporting ATPase; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Copper-exporting ATPase; hypothetical protein 6094256..6094903 Runella slithyformis DSM 19594 10873798 YP_004658675.1 CDS Runsl_5244 NC_015703.1 6095020 6097494 D PFAM: E1-E2 ATPase; Heavy-metal-associated domain; metal-binding domain of cation transport ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: sli:Slin_1483 hypothetical protein; SPTR: uncharacterized protein; manually curated; Copper-exporting ATPase 6095020..6097494 Runella slithyformis DSM 19594 10873799 YP_004658676.1 CDS Runsl_5245 NC_015703.1 6097491 6098255 R InterPro IPR004714; KEGG: dfe:Dfer_5324 cytochrome oxidase maturation protein, cbb3-type; PFAM: Cytochrome oxidase maturation protein cbb3-type; SPTR: Cytochrome oxidase maturation protein, cbb3-type; TIGRFAM: Cytochrome oxidase maturation protein cbb3-type; hypothetical protein complement(6097491..6098255) Runella slithyformis DSM 19594 10873800 YP_004658677.1 CDS Runsl_5246 NC_015703.1 6098539 6098703 D PFAM: Cytochrome oxidase maturation protein cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; COGs: COG3278 Cbb3-type cytochrome oxidase subunit 1; InterPro IPR004677:IPR003468:IPR000883; KEGG: dfe:Dfer_5323 bifunctional cbb3-type cytochrome c oxidase subunit I/II; PFAM: Cytochrome C oxidase, monohaem subunit/FixO; Cytochrome c oxidase, subunit I; SPTR: Cytochrome c oxidase, cbb3-type, subunit I; TIGRFAM: Cytochrome c oxidase cbb3-type, subunit I; Cytochrome C oxidase, monohaem subunit/FixO; cbb3-type cytochrome oxidase maturation protein 6098539..6098703 Runella slithyformis DSM 19594 10873801 YP_004658678.1 CDS Runsl_5247 NC_015703.1 6098722 6100869 D PFAM: Cytochrome C oxidase, mono-heme subunit/FixO; Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; cytochrome c oxidase, cbb3-type, subunit I; InterPro IPR003088; KEGG: dfe:Dfer_5322 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I; cytochrome c oxidase, cbb3-type subunit I 6098722..6100869 Runella slithyformis DSM 19594 10873802 YP_004658679.1 CDS Runsl_5248 NC_015703.1 6100931 6101992 D PFAM: Cytochrome c; Cbb3-type cytochrome oxidase component FixQ; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; COGs: COG0348 Polyferredoxin; InterPro IPR014116:IPR001450; KEGG: dfe:Dfer_5321 cytochrome c oxidase accessory protein CcoG; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: Cytochrome c oxidase accessory protein CcoG; TIGRFAM: Cytochrome c oxidase cbb3 type, accessory protein FixG; cytochrome c class I 6100931..6101992 Runella slithyformis DSM 19594 10873803 YP_004658680.1 CDS Runsl_5249 NC_015703.1 6102064 6103476 D PFAM: Ubp3 associated protein Bre5; TIGRFAM: cytochrome c oxidase accessory protein FixG; KEGG: dfe:Dfer_5320 hypothetical protein; SPTR: uncharacterized protein; cytochrome c oxidase accessory protein CcoG 6102064..6103476 Runella slithyformis DSM 19594 10873804 YP_004658681.1 CDS Runsl_5250 NC_015703.1 6103532 6103966 D PFAM: FixH; COGs: COG2836 conserved hypothetical protein; KEGG: cly:Celly_2055 integral membrane protein; SPTR: uncharacterized protein; hypothetical protein 6103532..6103966 Runella slithyformis DSM 19594 10873805 YP_004658682.1 CDS Runsl_5251 NC_015703.1 6104104 6104799 D COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR006638:IPR004558:IPR007197:IPR010723; KEGG: dfe:Dfer_5318 coproporphyrinogen III oxidase; PFAM: HemN, C-terminal; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; hypothetical protein 6104104..6104799 Runella slithyformis DSM 19594 10873806 YP_004658683.1 CDS Runsl_5252 NC_015703.1 6104992 6106353 D PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR000014:IPR003661:IPR003594:IPR013767; KEGG: dfe:Dfer_5317 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; SPTR: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS; oxygen-independent coproporphyrinogen III oxidase 6104992..6106353 Runella slithyformis DSM 19594 10873807 YP_004658684.1 CDS Runsl_5253 NC_015703.1 6106504 6107742 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR001789:IPR000595:IPR001808; KEGG: dfe:Dfer_5316 transcriptional regulator, Crp/Fnr family; PFAM: Signal transduction response regulator, receiver region; Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: Signal transduction response regulator, receiver region; Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SPTR: Transcriptional regulator, Crp/Fnr family; PAS/PAC sensor signal transduction histidine kinase 6106504..6107742 Runella slithyformis DSM 19594 10873808 YP_004658685.1 CDS Runsl_5254 NC_015703.1 6107746 6108804 D PFAM: Bacterial regulatory proteins, crp family; Response regulator receiver domain; Cyclic nucleotide-binding domain; COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_4779 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; Crp/Fnr family transcriptional regulator 6107746..6108804 Runella slithyformis DSM 19594 10873809 YP_004658686.1 CDS Runsl_5255 NC_015703.1 6108905 6110845 R PFAM: ABC transporter; KEGG: sli:Slin_4259 hypothetical protein; SPTR: uncharacterized protein; ABC transporter complement(6108905..6110845) Runella slithyformis DSM 19594 10873810 YP_004658687.1 CDS Runsl_5256 NC_015703.1 6111101 6112102 D COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; HAMAP: Glutaminyl-tRNA synthetase; InterPro IPR004514:IPR020058:IPR020059; KEGG: dfe:Dfer_2503 glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; PRIAM: Glutamine--tRNA ligase; SPTR: Glutaminyl-tRNA synthetase; TIGRFAM: Glutaminyl-tRNA synthetase, class Ic; hypothetical protein 6111101..6112102 Runella slithyformis DSM 19594 10873811 YP_004658688.1 CDS Runsl_5257 NC_015703.1 6112160 6113893 R PFAM: tRNA synthetases class I (E and Q), catalytic domain; tRNA synthetases class I (E and Q), anti-codon binding domain; TIGRFAM: glutaminyl-tRNA synthetase; glutaminyl-tRNA synthetase complement(6112160..6113893) Runella slithyformis DSM 19594 10873812 YP_004658689.1 CDS Runsl_5258 NC_015703.1 6113972 6114238 D COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: sli:Slin_1005 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; PFAM: 6-pyruvoyl tetrahydropterin synthase-related; SPTR: uncharacterized protein; hypothetical protein 6113972..6114238 Runella slithyformis DSM 19594 10873813 YP_004658690.1 CDS Runsl_5259 NC_015703.1 6114698 6115114 D PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: 6-pyruvoyl tetrahydropterin synthase/QueD family protein; COGs: COG0302 GTP cyclohydrolase I; HAMAP: GTP cyclohydrolase I; InterPro IPR001474:IPR020602; KEGG: dfe:Dfer_0468 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; PRIAM: GTP cyclohydrolase I; SPTR: GTP cyclohydrolase 1 1; TIGRFAM: GTP cyclohydrolase I; hypothetical protein 6114698..6115114 Runella slithyformis DSM 19594 10873814 YP_004658691.1 CDS Runsl_5260 NC_015703.1 6115077 6115772 D PFAM: GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; InterPro IPR019734:IPR001440:IPR013105; KEGG: sli:Slin_3125 hypothetical protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; GTP cyclohydrolase I 6115077..6115772 Runella slithyformis DSM 19594 10873815 YP_004658692.1 CDS Runsl_5261 NC_015703.1 6115799 6117313 R KEGG: sli:Slin_3425 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(6115799..6117313) Runella slithyformis DSM 19594 10873816 YP_004658693.1 CDS Runsl_5262 NC_015703.1 6117310 6117939 R PFAM: Protein of unknown function (DUF820); KEGG: dfe:Dfer_2654 transcription elongation factor; SPTR: Transcription elongation factor; hypothetical protein complement(6117310..6117939) Runella slithyformis DSM 19594 10873817 YP_004658694.1 CDS Runsl_5263 NC_015703.1 6117983 6118426 R PFAM: Transcription elongation factor, GreA/GreB, C-term; COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: dfe:Dfer_0240 aldo/keto reductase; PFAM: Aldo/keto reductase; PRIAM: Aryl-alcohol dehydrogenase (NADP(+)); SPTR: Aldo/keto reductase; transcription elongation factor complement(6117983..6118426) Runella slithyformis DSM 19594 10873818 YP_004658695.1 CDS Runsl_5264 NC_015703.1 6118526 6119548 R PFAM: Aldo/keto reductase; COGs: COG2135 conserved hypothetical protein; InterPro IPR003738; KEGG: sli:Slin_1581 hypothetical protein; PFAM: Protein of unknown function DUF159; SPTR: uncharacterized protein; aryl-alcohol dehydrogenase complement(6118526..6119548) Runella slithyformis DSM 19594 10873819 YP_004658696.1 CDS Runsl_5265 NC_015703.1 6119690 6120436 D PFAM: Uncharacterised ACR, COG2135; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); KEGG: dfe:Dfer_0244 alpha/beta hydrolase fold protein; SPTR: Alpha/beta hydrolase fold protein; hypothetical protein 6119690..6120436 Runella slithyformis DSM 19594 10873820 YP_004658697.1 CDS Runsl_5266 NC_015703.1 6120506 6121417 D PFAM: Prolyl oligopeptidase; COGs: COG3876 conserved hypothetical protein; InterPro IPR008302; KEGG: sli:Slin_0923 hypothetical protein; PFAM: Uncharacterised conserved protein UCP016719; SPTR: uncharacterized protein; alpha/beta hydrolase 6120506..6121417 Runella slithyformis DSM 19594 10873821 YP_004658698.1 CDS Runsl_5267 NC_015703.1 6121585 6122808 D PFAM: Protein of unknown function (DUF1343); COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR014036; KEGG: phe:Phep_3861 regulatory protein DeoR; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal; SPTR: transcriptional Regulator, DeoR family; hypothetical protein 6121585..6122808 Runella slithyformis DSM 19594 10873822 YP_004658699.1 CDS Runsl_5268 NC_015703.1 6122989 6123765 D PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain; COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550:IPR000644:IPR005170; KEGG: sli:Slin_1467 hypothetical protein; PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated region; SPTR: uncharacterized protein; DeoR family transcriptional regulator 6122989..6123765 Runella slithyformis DSM 19594 10873823 YP_004658700.1 CDS Runsl_5269 NC_015703.1 6123809 6125050 R PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain; InterPro IPR000086; KEGG: sli:Slin_1466 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; hypothetical protein complement(6123809..6125050) Runella slithyformis DSM 19594 10873824 YP_004658701.1 CDS Runsl_5270 NC_015703.1 6125203 6125892 D PFAM: NUDIX domain; COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: dol:Dole_2925 N-6 DNA methylase; PFAM: DNA methylase, adenine-specific; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: N-6 DNA methylase; NUDIX hydrolase 6125203..6125892 Runella slithyformis DSM 19594 10873825 YP_004658702.1 CDS Runsl_5271 NC_015703.1 6126186 6128243 D PFAM: N-6 DNA Methylase; HsdM N-terminal domain; COGs: COG4804 conserved hypothetical protein; InterPro IPR009362; KEGG: bhl:Bache_1818 hypothetical protein; PFAM: Protein of unknown function DUF1016; SPTR: uncharacterized protein; adenine-specific DNA methyltransferase 6126186..6128243 Runella slithyformis DSM 19594 10873826 YP_004658703.1 CDS Runsl_5272 NC_015703.1 6128240 6129316 D PFAM: Protein of unknown function (DUF1016); COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: syn:slr6097 type I site-specific deoxyribonuclease; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Restriction modification system DNA specificity domain; hypothetical protein 6128240..6129316 Runella slithyformis DSM 19594 10873827 YP_004658704.1 CDS Runsl_5273 NC_015703.1 6129381 6130694 D PFAM: Type I restriction modification DNA specificity domain; COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014001:IPR004473:IPR007409:IPR006935; KEGG: dol:Dole_2927 HsdR family type I site-specific deoxyribonuclease; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; SPTR: Type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; restriction modification system DNA specificity domain-containing protein 6129381..6130694 Runella slithyformis DSM 19594 10873828 YP_004658705.1 CDS Runsl_5274 NC_015703.1 6130702 6133779 D PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; COGs: COG1451 metal-dependent hydrolase; InterPro IPR002725; KEGG: dol:Dole_2928 hypothetical protein; PFAM: Protein of unknown function DUF45; SPTR: uncharacterized protein; HsdR family type I site-specific deoxyribonuclease 6130702..6133779 Runella slithyformis DSM 19594 10873829 YP_004658706.1 CDS Runsl_5275 NC_015703.1 6133779 6134435 D PFAM: Protein of unknown function DUF45; KEGG: sli:Slin_6082 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6133779..6134435 Runella slithyformis DSM 19594 10873830 YP_004658707.1 CDS Runsl_5276 NC_015703.1 6134656 6135405 D COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: sli:Slin_6081 glycoside hydrolase 43; PFAM: Glycoside hydrolase, family 43; SPTR: Glycoside hydrolase 43; hypothetical protein 6134656..6135405 Runella slithyformis DSM 19594 10873831 YP_004658708.1 CDS Runsl_5277 NC_015703.1 6135477 6136886 D PFAM: Glycosyl hydrolases family 43; InterPro IPR000835; KEGG: sli:Slin_4547 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; glycoside hydrolase 6135477..6136886 Runella slithyformis DSM 19594 10873832 YP_004658709.1 CDS Runsl_5278 NC_015703.1 6137025 6137681 R COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: sli:Slin_4546 ABC transporter; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; regulatory protein MarR complement(6137025..6137681) Runella slithyformis DSM 19594 10873833 YP_004658710.1 CDS Runsl_5279 NC_015703.1 6137812 6138498 D PFAM: ABC transporter; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR000089; KEGG: sli:Slin_4545 secretion protein HlyD; PFAM: Biotin/lipoyl attachment; SPTR: Secretion protein HlyD family protein; phosphonate-transporting ATPase 6137812..6138498 Runella slithyformis DSM 19594 10873834 YP_004658711.1 CDS Runsl_5280 NC_015703.1 6138522 6139466 D PFAM: HlyD family secretion protein; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: chu:CHU_2646 ABC transporter permease; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: ABC transporter, permease component; biotin/lipoyl attachment domain-containing protein 6138522..6139466 Runella slithyformis DSM 19594 10873835 YP_004658712.1 CDS Runsl_5281 NC_015703.1 6139486 6140604 D PFAM: Predicted permease; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_4543 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; hypothetical protein 6139486..6140604 Runella slithyformis DSM 19594 10873836 YP_004658713.1 CDS Runsl_5282 NC_015703.1 6140627 6141952 D PFAM: Outer membrane efflux protein; Prodigal; This gene is disrupted by insertion of repetitive element; manually curated; outer membrane efflux protein 6140627..6141952 Runella slithyformis DSM 19594 10873837 YP_004658714.1 CDS Runsl_5285 NC_015703.1 6144251 6145210 R PFAM: Transposase IS116/IS110/IS902 family; Transposase; KEGG: amr:AM1_5006 IS4 family transposase; SPTR: ISPg2, transposase; transposase IS116/IS110/IS902 family protein complement(6144251..6145210) Runella slithyformis DSM 19594 10873840 YP_004658715.1 CDS Runsl_5286 NC_015703.1 6145486 6146130 D hypothetical protein 6145486..6146130 Runella slithyformis DSM 19594 10873841 YP_004658716.1 CDS Runsl_5287 NC_015703.1 6146120 6146326 D COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: dfe:Dfer_1352 AAA ATPase; SMART: ATPase, AAA+ type, core; SPTR: AAA ATPase; hypothetical protein 6146120..6146326 Runella slithyformis DSM 19594 10873842 YP_004658717.1 CDS Runsl_5288 NC_015703.1 6146451 6147626 D COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: cao:Celal_2798 transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase; ATPase AAA 6146451..6147626 Runella slithyformis DSM 19594 10873843 YP_004658718.1 CDS Runsl_5289 NC_015703.1 6147934 6148917 R PFAM: Transposase; KEGG: dfe:Dfer_4027 hypothetical protein; SPTR: uncharacterized protein; transposase IS204/IS1001/IS1096/IS1165 family protein complement(6147934..6148917) Runella slithyformis DSM 19594 10873844 YP_004658719.1 CDS Runsl_5290 NC_015703.1 6148898 6149260 R hypothetical protein complement(6148898..6149260) Runella slithyformis DSM 19594 10873845 YP_004658720.1 CDS Runsl_5291 NC_015703.1 6149723 6152020 R KEGG: phe:Phep_0729 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(6149723..6152020) Runella slithyformis DSM 19594 10873847 YP_004658721.1 CDS Runsl_5292 NC_015703.1 6152037 6154529 R COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR000192; KEGG: phe:Phep_1563 cysteine desulfurase IscS; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Cysteine desulfurase; SPTR: Cysteine desulfurase; hypothetical protein complement(6152037..6154529) Runella slithyformis DSM 19594 10873848 YP_004658722.1 CDS Runsl_5293 NC_015703.1 6154643 6155794 D PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase NifS; COGs: COG1247 Sortase and related acyltransferase; InterPro IPR000182; KEGG: dfe:Dfer_2457 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; cysteine desulfurase 6154643..6155794 Runella slithyformis DSM 19594 10873849 YP_004658723.1 CDS Runsl_5294 NC_015703.1 6155843 6156334 R PFAM: Acetyltransferase (GNAT) family; COGs: COG3871 Uncharacterized stress protein (general stress protein 26); InterPro IPR011576; KEGG: chu:CHU_0468 general stress protein; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; SPTR: General stress protein; N-acetyltransferase GCN5 complement(6155843..6156334) Runella slithyformis DSM 19594 10873850 YP_004658724.1 CDS Runsl_5295 NC_015703.1 6156540 6157040 D PFAM: Pyridoxamine 5'-phosphate oxidase; COGs: COG1410 Methionine synthase I cobalamin-binding domain; InterProIPR011822:IPR003726:IPR000489:IPR003759:IPR 006158:IPR004223; KEGG: dfe:Dfer_2804 methionine synthase; PFAM: Homocysteine S-methyltransferase; Dihydropteroate synthase, DHPS; Methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; Vitamin B12 dependent methionine synthase, activation region; PRIAM: Methionine synthase; SPTR: Methionine synthase; TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 6156540..6157040 Runella slithyformis DSM 19594 10873851 YP_004658725.1 CDS Runsl_5296 NC_015703.1 6157104 6161006 R PFAM: Pterin binding enzyme; Vitamin B12 dependent methionine synthase, activation domain; B12 binding domain; Homocysteine S-methyltransferase; TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; KEGG: sli:Slin_0752 hypothetical protein; SPTR: uncharacterized protein; methionine synthase complement(6157104..6161006) Runella slithyformis DSM 19594 10873852 YP_004658726.1 CDS Runsl_5297 NC_015703.1 6161377 6162012 R KEGG: mtt:Ftrac_0101 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(6161377..6162012) Runella slithyformis DSM 19594 10873853 YP_004658727.1 CDS Runsl_5298 NC_015703.1 6162051 6162527 R COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR008816:IPR006665; KEGG: rmr:Rmar_0728 OmpA/MotB domain-containing protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Rickettsia 17kDa surface antigen; SPTR: OmpA/MotB domain protein; hypothetical protein complement(6162051..6162527) Runella slithyformis DSM 19594 10873854 YP_004658728.1 CDS Runsl_5299 NC_015703.1 6162590 6163345 R PFAM: OmpA family; COGs: COG1522 Transcriptional regulators; InterPro IPR019888:IPR019887; KEGG: dfe:Dfer_2805 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type; SPTR: Transcriptional regulator, AsnC family; OmpA/MotB domain-containing protein complement(6162590..6163345) Runella slithyformis DSM 19594 10873855 YP_004658729.1 CDS Runsl_5300 NC_015703.1 6163647 6164108 D PFAM: Sugar-specific transcriptional regulator TrmB; AsnC family; AsnC family transcriptional regulator 6163647..6164108 Runella slithyformis DSM 19594 10873856 YP_004658730.1 CDS Runsl_5301 NC_015703.1 6164469 6164741 D COGs: COG2509 Uncharacterized FAD-dependent dehydrogenase; InterPro IPR013027; KEGG: sli:Slin_1023 FAD dependent oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: FAD dependent oxidoreductase; hypothetical protein 6164469..6164741 Runella slithyformis DSM 19594 10873857 YP_004658731.1 CDS Runsl_5302 NC_015703.1 6164848 6166443 D PFAM: Pyridine nucleotide-disulphide oxidoreductase; InterPro IPR000086; KEGG: sli:Slin_1022 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 6164848..6166443 Runella slithyformis DSM 19594 10873858 YP_004658732.1 CDS Runsl_5303 NC_015703.1 6166590 6167210 D PFAM: NUDIX domain; KEGG: dfe:Dfer_4967 hypothetical protein; SPTR: uncharacterized protein; NUDIX hydrolase 6166590..6167210 Runella slithyformis DSM 19594 10873859 YP_004658733.1 CDS Runsl_5304 NC_015703.1 6167358 6170312 D PFAM: Protein of unknown function (DUF2723); COGs: COG2363 Uncharacterized small membrane protein; InterPro IPR006696; KEGG: dfe:Dfer_2013 protein of unknown function DUF423; PFAM: Protein of unknown function DUF423; SPTR: uncharacterized protein; hypothetical protein 6167358..6170312 Runella slithyformis DSM 19594 10873860 YP_004658734.1 CDS Runsl_5305 NC_015703.1 6170415 6170798 R PFAM: Protein of unknown function (DUF423); COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: dfe:Dfer_2012 ADP-heptose:LPS heptosyltransferase-like protein; PFAM: Glycosyl transferase, family 9; SPTR: ADP-heptose:LPS heptosyltransferase-like protein; hypothetical protein complement(6170415..6170798) Runella slithyformis DSM 19594 10873861 YP_004658735.1 CDS Runsl_5306 NC_015703.1 6171065 6172114 D PFAM: Glycosyltransferase 9 (heptosyltransferase); COGs: COG0305 Replicative DNA helicase; InterPro IPR007692:IPR007693:IPR007694; KEGG: sli:Slin_1916 replicative DNA helicase; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; SPTR: Replicative DNA helicase; TIGRFAM: DNA helicase, DnaB type; glycosyl transferase family protein 6171065..6172114 Runella slithyformis DSM 19594 10873862 YP_004658736.1 CDS Runsl_5307 NC_015703.1 6172217 6173818 D PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase; KEGG: sli:Slin_0008 hypothetical protein; SPTR: uncharacterized protein; replicative DNA helicase 6172217..6173818 Runella slithyformis DSM 19594 10873863 YP_004658737.1 CDS Runsl_5308 NC_015703.1 6173933 6174883 R PFAM: Protein of unknown function (DUF3108); COGs: COG4324 aminopeptidase; InterPro IPR014553; KEGG: sli:Slin_0009 aminopeptidase; PFAM: aminopeptidase; SPTR: Aminopeptidase; hypothetical protein complement(6173933..6174883) Runella slithyformis DSM 19594 10873864 YP_004658738.1 CDS Runsl_5309 NC_015703.1 6174891 6175922 R PFAM: Predicted aminopeptidase (DUF2265); COGs: COG2021 Homoserine acetyltransferase; InterPro IPR006296:IPR000073; KEGG: dfe:Dfer_2669 homoserine O-acetyltransferase; PFAM: Alpha/beta hydrolase fold-1; PRIAM: Homoserine O-acetyltransferase; SPTR: Homoserine O-acetyltransferase; TIGRFAM: Homoserine O-acetyltransferase; aminopeptidase complement(6174891..6175922) Runella slithyformis DSM 19594 10873865 YP_004658739.1 CDS Runsl_5310 NC_015703.1 6176038 6177072 R PFAM: alpha/beta hydrolase fold; TIGRFAM: homoserine O-acetyltransferase; InterPro IPR007922; KEGG: dfe:Dfer_2709 protein of unknown function DUF721; PFAM: Protein of unknown function DUF721; SPTR: uncharacterized protein; homoserine O-acetyltransferase complement(6176038..6177072) Runella slithyformis DSM 19594 10873866 YP_004658740.1 CDS Runsl_5311 NC_015703.1 6177499 6177819 D PFAM: Protein of unknown function (DUF721); COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR003593:IPR004176:IPR003959:IPR001943:IPR 013093:IPR019489; KEGG: dfe:Dfer_5019 ATPase AAA-2 domain protein; PFAM: ATPase associated with various cellular activities, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; UvrB/UvrC protein; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATPase AAA-2 domain protein; hypothetical protein 6177499..6177819 Runella slithyformis DSM 19594 10873867 YP_004658741.1 CDS Runsl_5312 NC_015703.1 6178152 6180677 R PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase associated with various cellular activities (AAA); UvrB/uvrC motif; InterPro IPR014985; KEGG: sli:Slin_1369 WbqC-like family protein; PFAM: WbqC-like protein family; SPTR: WbqC-like family protein; ATPase AAA complement(6178152..6180677) Runella slithyformis DSM 19594 10873868 YP_004658742.1 CDS Runsl_5313 NC_015703.1 6180763 6181389 R PFAM: WbqC-like protein family; COGs: COG1402 Uncharacterized protein amidase; InterPro IPR003785; KEGG: zpr:ZPR_4313 creatinine amidohydrolase; PFAM: Creatininase; SPTR: Creatinine amidohydrolase; WbqC-like family protein complement(6180763..6181389) Runella slithyformis DSM 19594 10873869 YP_004658743.1 CDS Runsl_5314 NC_015703.1 6181566 6182330 R PFAM: Creatinine amidohydrolase; COGs: COG1560 Lauroyl/myristoyl acyltransferase; InterPro IPR004960; KEGG: sli:Slin_1368 lipid A biosynthesis acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase; SPTR: Lipid A biosynthesis acyltransferase; creatininase complement(6181566..6182330) Runella slithyformis DSM 19594 10873870 YP_004658744.1 CDS Runsl_5315 NC_015703.1 6182620 6183477 D PFAM: Bacterial lipid A biosynthesis acyltransferase; Prodigal; manually curated; lipid A biosynthesis acyltransferase 6182620..6183477 Runella slithyformis DSM 19594 10873871 YP_004658745.1 CDS Runsl_5317 NC_015703.1 6184086 6184616 D PFAM: Acetyltransferase (GNAT) family; N-acetyltransferase GCN5 6184086..6184616 Runella slithyformis DSM 19594 10873873 YP_004658746.1 CDS Runsl_5318 NC_015703.1 6184464 6184802 R InterPro IPR001387:IPR019759; KEGG: mtt:Ftrac_3516 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; Peptidase S24/S26A/S26B, conserved region; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix domain protein; hypothetical protein complement(6184464..6184802) Runella slithyformis DSM 19594 10873874 YP_004658747.1 CDS Runsl_5319 NC_015703.1 6184799 6185506 R PFAM: Helix-turn-helix; COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase); InterPro IPR019759; KEGG: syf:Synpcc7942_1549 SOS mutagenesis protein UmuD; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: DNA polymerase V; helix-turn-helix domain-containing protein complement(6184799..6185506) Runella slithyformis DSM 19594 10873875 YP_004658748.1 CDS Runsl_5320 NC_015703.1 6185626 6186039 D PFAM: Peptidase S24-like; COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; InterPro IPR001126; KEGG: chu:CHU_1492 DNA repair nucleotidyltransferase/DNA polymerase; PFAM: DNA-repair protein, UmuC-like; PRIAM: DNA-directed DNA polymerase; SPTR: Nucleotidyltransferase/DNA polymerase involved in DNA repair; peptidase S24/S26A/S26B, conserved region 6185626..6186039 Runella slithyformis DSM 19594 10873876 YP_004658749.1 CDS Runsl_5321 NC_015703.1 6186041 6187357 D PFAM: impB/mucB/samB family C-terminal; impB/mucB/samB family; DNA-directed DNA polymerase 6186041..6187357 Runella slithyformis DSM 19594 10873877 YP_004658750.1 CDS Runsl_5322 NC_015703.1 6187401 6187691 D Prodigal; manually curated; hypothetical protein 6187401..6187691 Runella slithyformis DSM 19594 10873878 YP_004658751.1 CDS Runsl_5324 NC_015703.1 6188858 6189028 R Prodigal; manually curated; hypothetical protein complement(6188858..6189028) Runella slithyformis DSM 19594 10873880 YP_004658752.1 CDS Runsl_5326 NC_015703.1 6190664 6191863 D Prodigal; manually curated; hypothetical protein 6190664..6191863 Runella slithyformis DSM 19594 10873882 YP_004658753.1 CDS Runsl_5328 NC_015703.1 6192342 6192713 R PFAM: Response regulator receiver domain; COGs: COG0642 Signal transduction histidine kinase; InterProIPR001610:IPR000014:IPR003661:IPR003594:IPR 013655:IPR013656; KEGG: sli:Slin_0618 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold-4; PAS fold-3; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; response regulator receiver protein complement(6192342..6192713) Runella slithyformis DSM 19594 10873884 YP_004658754.1 CDS Runsl_5329 NC_015703.1 6192753 6194999 R PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: sus:Acid_4818 oxidoreductase domain-containing protein; PFAM: Oxidoreductase, N-terminal; SPTR: uncharacterized protein; PAS/PAC sensor signal transduction histidine kinase complement(6192753..6194999) Runella slithyformis DSM 19594 10873885 YP_004658755.1 CDS Runsl_5330 NC_015703.1 6195410 6196777 D PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: cao:Celal_2798 transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase; oxidoreductase domain-containing protein 6195410..6196777 Runella slithyformis DSM 19594 10873886 YP_004658756.1 CDS Runsl_5331 NC_015703.1 6196927 6197910 R PFAM: Transposase; KEGG: dfe:Dfer_4027 hypothetical protein; SPTR: uncharacterized protein; transposase IS204/IS1001/IS1096/IS1165 family protein complement(6196927..6197910) Runella slithyformis DSM 19594 10873887 YP_004658757.1 CDS Runsl_5332 NC_015703.1 6197891 6198253 R hypothetical protein complement(6197891..6198253) Runella slithyformis DSM 19594 10873888 YP_004658758.1 CDS Runsl_5333 NC_015703.1 6198283 6198717 R hypothetical protein complement(6198283..6198717) Runella slithyformis DSM 19594 10873889 YP_004658759.1 CDS Runsl_5334 NC_015703.1 6199190 6200044 D PFAM: Fumarylacetoacetate (FAA) hydrolase; KEGG: dfe:Dfer_5077 hypothetical protein; SPTR: uncharacterized protein; ureidoglycolate lyase 6199190..6200044 Runella slithyformis DSM 19594 10873891 YP_004658760.1 CDS Runsl_5335 NC_015703.1 6200157 6202316 D PFAM: Domain of unknown function (DUF1083); COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834; KEGG: cpi:Cpin_1727 haloacid dehalogenase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Haloacid dehalogenase domain protein hydrolase; hypothetical protein 6200157..6202316 Runella slithyformis DSM 19594 10873892 YP_004658761.1 CDS Runsl_5336 NC_015703.1 6202338 6203168 D PFAM: haloacid dehalogenase-like hydrolase; InterPro IPR012910; KEGG: dfe:Dfer_4830 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; haloacid dehalogenase 6202338..6203168 Runella slithyformis DSM 19594 10873893 YP_004658762.1 CDS Runsl_5337 NC_015703.1 6203251 6205572 D PFAM: TonB-dependent Receptor Plug Domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060; KEGG: sli:Slin_4241 AraC family transcriptional regulator; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; TonB-dependent receptor plug 6203251..6205572 Runella slithyformis DSM 19594 10873894 YP_004658763.1 CDS Runsl_5338 NC_015703.1 6205625 6206488 D COGs: COG2128 conserved hypothetical protein; InterPro IPR004675:IPR003779; KEGG: sli:Slin_6223 alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; SPTR: Alkylhydroperoxidase like protein, AhpD family; TIGRFAM: Alkylhydroperoxidase AhpD core; AraC family transcriptional regulator 6205625..6206488 Runella slithyformis DSM 19594 10873895 YP_004658764.1 CDS Runsl_5339 NC_015703.1 6206585 6207130 D PFAM: Carboxymuconolactone decarboxylase; TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase AhpD family core domain; InterPro IPR011576; KEGG: sli:Slin_6225 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; SPTR: Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein; alkylhydroperoxidase 6206585..6207130 Runella slithyformis DSM 19594 10873896 YP_004658765.1 CDS Runsl_5340 NC_015703.1 6207189 6207875 D PFAM: Pyridoxamine 5'-phosphate oxidase; COGs: COG3618 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: sli:Slin_0412 amidohydrolase 2; PFAM: Amidohydrolase 2; SPTR: Amidohydrolase 2; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 6207189..6207875 Runella slithyformis DSM 19594 10873897 YP_004658766.1 CDS Runsl_5341 NC_015703.1 6207883 6208722 R PFAM: Amidohydrolase; InterPro IPR006652; KEGG: dfe:Dfer_4451 kelch repeat-containing protein; PFAM: Kelch repeat type 1; SMART: Kelch repeat type 1; SPTR: Kelch repeat-containing protein; amidohydrolase complement(6207883..6208722) Runella slithyformis DSM 19594 10873898 YP_004658767.1 CDS Runsl_5342 NC_015703.1 6208853 6209836 R PFAM: Kelch motif; Kelch repeat type 1-containing protein complement(6208853..6209836) Runella slithyformis DSM 19594 10873899 YP_004658768.1 CDS Runsl_5343 NC_015703.1 6210099 6210203 R COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sli:Slin_2987 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; hypothetical protein complement(6210099..6210203) Runella slithyformis DSM 19594 10873900 YP_004658769.1 CDS Runsl_5344 NC_015703.1 6210268 6211815 R PFAM: Beta-lactamase; Domain of unknown function (DUF3471); beta-lactamase complement(6210268..6211815) Runella slithyformis DSM 19594 10873901 YP_004658770.1 CDS Runsl_5345 NC_015703.1 6211832 6212290 R KEGG: sli:Slin_4467 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(6211832..6212290) Runella slithyformis DSM 19594 10873902 YP_004658771.1 CDS Runsl_5346 NC_015703.1 6212352 6212810 R KEGG: sli:Slin_3038 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(6212352..6212810) Runella slithyformis DSM 19594 10873903 YP_004658772.1 CDS Runsl_5347 NC_015703.1 6212995 6214569 D COGs: COG0327 conserved hypothetical protein; KEGG: sli:Slin_2404 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6212995..6214569 Runella slithyformis DSM 19594 10873904 YP_004658773.1 CDS Runsl_5348 NC_015703.1 6214802 6215467 D PFAM: NIF3 (NGG1p interacting factor 3); InterPro IPR004360; KEGG: sli:Slin_0926 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: uncharacterized protein; hypothetical protein 6214802..6215467 Runella slithyformis DSM 19594 10873905 YP_004658774.1 CDS Runsl_5349 NC_015703.1 6215469 6215849 R PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG1820 N-acetylglucosamine-6-phosphate deacetylase; InterPro IPR003764:IPR006680; KEGG: fjo:Fjoh_3974 N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase 1; PRIAM: N-acetylglucosamine-6-phosphate deacetylase; SPTR: Candidate N-acetylglucosamine-6-phosphate deacetylase; Carbohydrate esterase 9; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; Glyoxalase/bleomycin resistance protein/dioxygenase complement(6215469..6215849) Runella slithyformis DSM 19594 10873906 YP_004658775.1 CDS Runsl_5350 NC_015703.1 6215862 6216986 R PFAM: Amidohydrolase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: tra:Trad_2126 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase; N-acetylglucosamine-6-phosphate deacetylase complement(6215862..6216986) Runella slithyformis DSM 19594 10873907 YP_004658776.1 CDS Runsl_5351 NC_015703.1 6217054 6218184 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG0656 Aldo/keto reductase related to diketogulonate reductase; InterPro IPR001395; KEGG: sli:Slin_6248 2,5-didehydrogluconate reductase; PFAM: Aldo/keto reductase; PRIAM: Methylglyoxal reductase (NADPH-dependent); SPTR: 2,5-didehydrogluconate reductase; DegT/DnrJ/EryC1/StrS aminotransferase 6217054..6218184 Runella slithyformis DSM 19594 10873908 YP_004658777.1 CDS Runsl_5352 NC_015703.1 6218257 6219069 R PFAM: Aldo/keto reductase; COGs: COG4784 Zn-dependent protease; InterPro IPR001915; KEGG: sli:Slin_4877 peptidase M48 Ste24p; PFAM: Peptidase M48, Ste24p; SPTR: Peptidase M48 Ste24p; manually curated; methylglyoxal reductase complement(6218257..6219069) Runella slithyformis DSM 19594 10873909 YP_004658778.1 CDS Runsl_5353 NC_015703.1 6219270 6220745 D PFAM: Peptidase M48; COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: sli:Slin_2383 DNA protecting protein DprA; PFAM: DNA recombination-mediator protein A; SPTR: DNA protecting protein DprA; TIGRFAM: DNA recombination-mediator protein A; peptidase M48 Ste24p 6219270..6220745 Runella slithyformis DSM 19594 10873910 YP_004658779.1 CDS Runsl_5354 NC_015703.1 6220832 6221920 R PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA; COGs: COG0069 Glutamate synthase domain 2; InterPro IPR002932; KEGG: dfe:Dfer_5008 ferredoxin-dependent glutamate synthase; PFAM: Glutamate synthase, central-C; PRIAM: Glutamate synthase (NADPH); SPTR: Ferredoxin-dependent glutamate synthase; DNA protecting protein DprA complement(6220832..6221920) Runella slithyformis DSM 19594 10873911 YP_004658780.1 CDS Runsl_5355 NC_015703.1 6221930 6223495 R PFAM: Conserved region in glutamate synthase; COGs: COG2367 Beta-lactamase class A; KEGG: fnu:FN1584 beta-lactamase; SPTR: Possible beta-lactamase class A; glutamate synthase complement(6221930..6223495) Runella slithyformis DSM 19594 10873912 YP_004658781.1 CDS Runsl_5356 NC_015703.1 6223510 6224364 R PFAM: D-alanyl-D-alanine carboxypeptidase; beta-lactamase complement(6223510..6224364) Runella slithyformis DSM 19594 10873913 YP_004658782.1 CDS Runsl_5357 NC_015703.1 6224401 6224847 R Prodigal; manually curated; hypothetical protein complement(6224401..6224847) Runella slithyformis DSM 19594 10873914 YP_004658783.1 CDS Runsl_5359 NC_015703.1 6225726 6226820 R PFAM: Endonuclease/Exonuclease/phosphatase; KEGG: sli:Slin_3038 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(6225726..6226820) Runella slithyformis DSM 19594 10873916 YP_004658784.1 CDS Runsl_5360 NC_015703.1 6226871 6228373 D COGs: COG1866 Phosphoenolpyruvate carboxykinase (ATP); HAMAP: Phosphoenolpyruvate carboxykinase [ATP]; InterPro IPR001272; KEGG: rmr:Rmar_1197 phosphoenolpyruvate carboxykinase (ATP); PFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising; SPTR: Phosphoenolpyruvate carboxykinase [ATP]; TIGRFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising; hypothetical protein 6226871..6228373 Runella slithyformis DSM 19594 10873917 YP_004658785.1 CDS Runsl_5361 NC_015703.1 6228653 6230242 D PFAM: Phosphoenolpyruvate carboxykinase; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP); COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: cpi:Cpin_2227 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; phosphoenolpyruvate carboxykinase 6228653..6230242 Runella slithyformis DSM 19594 10873918 YP_004658786.1 CDS Runsl_5362 NC_015703.1 6230504 6231835 D PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG1585 Membrane protein implicated in regulation of membrane protease activity; InterPro IPR002810; KEGG: dfe:Dfer_3005 protein of unknown function DUF107; PFAM: Nodulation efficiency, NfeD; SPTR: uncharacterized protein; oxidoreductase domain-containing protein 6230504..6231835 Runella slithyformis DSM 19594 10873919 YP_004658787.1 CDS Runsl_5363 NC_015703.1 6231946 6232395 R PFAM: NfeD-like; COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: dfe:Dfer_3004 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: Band 7 protein; hypothetical protein complement(6231946..6232395) Runella slithyformis DSM 19594 10873920 YP_004658788.1 CDS Runsl_5364 NC_015703.1 6232430 6233347 R PFAM: SPFH domain / Band 7 family; COGs: COG1058 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; InterPro IPR008135:IPR008136:IPR001453; KEGG: sli:Slin_1357 competence/damage-inducible protein CinA; PFAM: CinA, C-terminal; Molybdopterin binding; SPTR: CinA-like protein; TIGRFAM: Competence-induced protein CinA; CinA, C-terminal; hypothetical protein complement(6232430..6233347) Runella slithyformis DSM 19594 10873921 YP_004658789.1 CDS Runsl_5365 NC_015703.1 6233743 6234990 D PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain; COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR000089:IPR004167:IPR001078; KEGG: sli:Slin_1356 catalytic domain of components of various dehydrogenase complexes; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; PRIAM: Dihydrolipoyllysine-residue succinyltransferase; SPTR: Catalytic domain of components of various dehydrogenase complexes; competence/damage-inducible protein CinA 6233743..6234990 Runella slithyformis DSM 19594 10873922 YP_004658790.1 CDS Runsl_5366 NC_015703.1 6235047 6236390 D PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: mea:Mex_1p3295 arylesterase (alpha/beta hydrolase fold), haloperoxidase; PFAM: Alpha/beta hydrolase fold-1; PRIAM: Arylesterase; SPTR: Arylesterase (Alpha/beta hydrolase fold), haloperoxidase; dihydrolipoyllysine-residue succinyltransferase 6235047..6236390 Runella slithyformis DSM 19594 10873923 YP_004658791.1 CDS Runsl_5367 NC_015703.1 6236559 6237395 D PFAM: alpha/beta hydrolase fold; COGs: COG0456 Acetyltransferase; InterPro IPR000182; KEGG: mac:MA3954 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase; arylesterase 6236559..6237395 Runella slithyformis DSM 19594 10873924 YP_004658792.1 CDS Runsl_5368 NC_015703.1 6237402 6237914 R PFAM: Acetyltransferase (GNAT) family; KEGG: sli:Slin_5715 hypothetical protein; SPTR: uncharacterized protein; N-acetyltransferase GCN5 complement(6237402..6237914) Runella slithyformis DSM 19594 10873925 YP_004658793.1 CDS Runsl_5369 NC_015703.1 6238122 6238748 R COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: lby:Lbys_0414 transcriptional regulator, crp/fnr family; PFAM: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; hypothetical protein complement(6238122..6238748) Runella slithyformis DSM 19594 10873926 YP_004658794.1 CDS Runsl_5370 NC_015703.1 6238837 6239415 R PFAM: Cyclic nucleotide-binding domain; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: lby:Lbys_0110 short-chain dehydrogenase/reductase sdr; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; Crp/Fnr family transcriptional regulator complement(6238837..6239415) Runella slithyformis DSM 19594 10873927 YP_004658795.1 CDS Runsl_5371 NC_015703.1 6239431 6240222 R PFAM: short chain dehydrogenase; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: lby:Lbys_0111 transcriptional regulator, crp/fnr family; PFAM: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; short-chain dehydrogenase/reductase SDR complement(6239431..6240222) Runella slithyformis DSM 19594 10873928 YP_004658796.1 CDS Runsl_5372 NC_015703.1 6240291 6240866 R PFAM: Cyclic nucleotide-binding domain; KEGG: lbf:LBF_2484 hypothetical protein; SPTR: uncharacterized protein; Crp/Fnr family transcriptional regulator complement(6240291..6240866) Runella slithyformis DSM 19594 10873929 YP_004658797.1 CDS Runsl_5373 NC_015703.1 6241026 6242219 R COGs: COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain; KEGG: dfe:Dfer_5786 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(6241026..6242219) Runella slithyformis DSM 19594 10873930 YP_004658798.1 CDS Runsl_5374 NC_015703.1 6242351 6243454 R InterPro IPR013216; KEGG: dfe:Dfer_0228 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; hypothetical protein complement(6242351..6243454) Runella slithyformis DSM 19594 10873931 YP_004658799.1 CDS Runsl_5375 NC_015703.1 6243608 6244342 D PFAM: Methyltransferase domain; InterPro IPR009474; KEGG: dfe:Dfer_5785 protein of unknown function DUF1094; PFAM: Uncharacterised protein family UPF0403; SPTR: uncharacterized protein; type 11 methyltransferase 6243608..6244342 Runella slithyformis DSM 19594 10873932 YP_004658800.1 CDS Runsl_5376 NC_015703.1 6244436 6244864 R PFAM: Protein of unknown function (DUF1094); COGs: COG2151 metal-sulfur cluster biosynthetic protein; InterPro IPR014291:IPR002744; KEGG: dfe:Dfer_5784 FeS assembly SUF system protein; PFAM: Protein of unknown function DUF59; SPTR: FeS assembly SUF system protein; TIGRFAM: SUF system FeS cluster assembly associated; hypothetical protein complement(6244436..6244864) Runella slithyformis DSM 19594 10873933 YP_004658801.1 CDS Runsl_5377 NC_015703.1 6244926 6245237 R PFAM: Domain of unknown function DUF59; TIGRFAM: FeS assembly SUF system protein; COGs: COG2166 SufE protein probably involved in Fe-S center assembly; InterPro IPR003808; KEGG: sli:Slin_0163 Fe-S metabolism associated SufE; PFAM: Fe-S metabolism associated SufE; SPTR: Fe-S metabolism associated SufE; FeS assembly SUF system protein complement(6244926..6245237) Runella slithyformis DSM 19594 10873934 YP_004658802.1 CDS Runsl_5378 NC_015703.1 6245281 6245709 R PFAM: Fe-S metabolism associated domain; InterPro IPR007712; KEGG: sli:Slin_0164 plasmid stabilization system; PFAM: Plasmid stabilisation system; SPTR: Plasmid stabilization system; Fe-S metabolism associated SufE complement(6245281..6245709) Runella slithyformis DSM 19594 10873935 YP_004658803.1 CDS Runsl_5379 NC_015703.1 6245706 6245999 R PFAM: Plasmid stabilisation system protein; KEGG: sli:Slin_0165 hypothetical protein; SPTR: uncharacterized protein; plasmid stabilization system complement(6245706..6245999) Runella slithyformis DSM 19594 10873936 YP_004658804.1 CDS Runsl_5380 NC_015703.1 6245984 6246181 R COGs: COG0520 Selenocysteine lyase; InterPro IPR010970:IPR000192; KEGG: dfe:Dfer_5780 cysteine desulfurase, SufS subfamily; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Selenocysteine lyase; SPTR: Cysteine desulfurase, SufS subfamily; TIGRFAM: Cysteine desulfurase, SufS; hypothetical protein complement(6245984..6246181) Runella slithyformis DSM 19594 10873937 YP_004658805.1 CDS Runsl_5381 NC_015703.1 6246193 6247410 R PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily; KEGG: dfe:Dfer_3935 hypothetical protein; SPTR: uncharacterized protein; cysteine desulfurase complement(6246193..6247410) Runella slithyformis DSM 19594 10873938 YP_004658806.1 CDS Runsl_5382 NC_015703.1 6247627 6247941 D COGs: COG0359 Ribosomal protein L9; HAMAP: Ribosomal protein L9, bacteria/chloroplast; InterPro IPR020594:IPR020070:IPR020069; KEGG: dfe:Dfer_2007 ribosomal protein L9; PFAM: Ribosomal protein L9, N-terminal; Ribosomal protein L9, C-terminal; SPTR: 50S ribosomal protein L9; TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; hypothetical protein 6247627..6247941 Runella slithyformis DSM 19594 10873939 YP_004658807.1 CDS Runsl_5383 NC_015703.1 6248009 6248452 R PFAM: Ribosomal protein L9, N-terminal domain; Ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9; COGs: COG0238 Ribosomal protein S18; HAMAP: 30S ribosomal protein S18; InterPro IPR001648; KEGG: dfe:Dfer_2008 30S ribosomal protein S18; PFAM: Ribosomal protein S18; SPTR: 30S ribosomal protein S18; TIGRFAM: Ribosomal protein S18; 50S ribosomal protein L9 complement(6248009..6248452) Runella slithyformis DSM 19594 10873940 YP_004658808.1 CDS Runsl_5384 NC_015703.1 6248475 6248726 R PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18; COGs: COG0360 Ribosomal protein S6; HAMAP: Ribosomal protein S6, bacterial-like; InterPro IPR020814:IPR000529; KEGG: dfe:Dfer_2009 30S ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like; SPTR: 30S ribosomal protein S6; TIGRFAM: Ribosomal protein S6; 30S ribosomal protein S18 complement(6248475..6248726) Runella slithyformis DSM 19594 10873941 YP_004658809.1 CDS Runsl_5385 NC_015703.1 6248726 6249100 R PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6; COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR003953; KEGG: phe:Phep_2084 FAD dependent oxidoreductase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; SPTR: FAD dependent oxidoreductase; 30S ribosomal protein S6 complement(6248726..6249100) Runella slithyformis DSM 19594 10873942 YP_004658810.1 CDS Runsl_5386 NC_015703.1 6249227 6250672 R PFAM: FAD binding domain; COGs: COG2873 O-acetylhomoserine sulfhydrylase; InterPro IPR006235:IPR000277; KEGG: dfe:Dfer_1094 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; PRIAM: Cysteine synthase; SPTR: O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein complement(6249227..6250672) Runella slithyformis DSM 19594 10873943 YP_004658811.1 CDS Runsl_5387 NC_015703.1 6251773 6253059 D PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: OAH/OAS sulfhydrylase; COGs: COG3358 conserved hypothetical protein; InterPro IPR012467; KEGG: sli:Slin_4806 hypothetical protein; PFAM: Protein of unknown function DUF1684; SPTR: uncharacterized protein; O-acetylhomoserine/O-acetylserine sulfhydrylase 6251773..6253059 Runella slithyformis DSM 19594 10873944 YP_004658812.1 CDS Runsl_5388 NC_015703.1 6253167 6254054 R PFAM: Protein of unknown function (DUF1684); KEGG: dfe:Dfer_2835 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; hypothetical protein complement(6253167..6254054) Runella slithyformis DSM 19594 10873945 YP_004658813.1 CDS Runsl_5389 NC_015703.1 6254254 6254853 R PFAM: AhpC/TSA family; COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: dfe:Dfer_4495 fatty acid hydroxylase; PFAM: Fatty acid hydroxylase; SPTR: Fatty acid hydroxylase; alkyl hydroperoxide reductase complement(6254254..6254853) Runella slithyformis DSM 19594 10873946 YP_004658814.1 CDS Runsl_5390 NC_015703.1 6254905 6256110 R PFAM: Fatty acid hydroxylase superfamily; Prodigal; manually curated; fatty acid hydroxylase complement(6254905..6256110) Runella slithyformis DSM 19594 10873947 YP_004658815.1 CDS Runsl_5392 NC_015703.1 6256564 6258621 R PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein; KEGG: sli:Slin_1918 hypothetical protein; SPTR: uncharacterized protein; ComEC/Rec2-like protein complement(6256564..6258621) Runella slithyformis DSM 19594 10873949 YP_004658816.1 CDS Runsl_5393 NC_015703.1 6258618 6259949 R PFAM: Pregnancy-associated plasma protein-A; COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR003714; KEGG: dfe:Dfer_1072 PhoH family protein; PFAM: PhoH-like protein; SPTR: PhoH family protein; hypothetical protein complement(6258618..6259949) Runella slithyformis DSM 19594 10873950 YP_004658817.1 CDS Runsl_5394 NC_015703.1 6259957 6260913 R PFAM: PhoH-like protein; KEGG: ami:Amir_1954 LPXTG-motif cell wall anchor domain protein; SPTR: Predicted protein; PhoH family protein complement(6259957..6260913) Runella slithyformis DSM 19594 10873951 YP_004658818.1 CDS Runsl_5395 NC_015703.1 6261437 6263119 D KEGG: sli:Slin_5055 phosphoesterase PA-phosphatase related protein; SPTR: Phosphoesterase PA-phosphatase related protein; hypothetical protein 6261437..6263119 Runella slithyformis DSM 19594 10873952 YP_004658819.1 CDS Runsl_5396 NC_015703.1 6263475 6264833 D PFAM: PAP2 superfamily; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439; KEGG: sli:Slin_1762 ABC transporter; PFAM: ABC transporter-like; SPTR: ABC transporter related protein; phosphoesterase PA-phosphatase-like protein 6263475..6264833 Runella slithyformis DSM 19594 10873953 YP_004658820.1 CDS Runsl_5397 NC_015703.1 6264868 6265509 D PFAM: ABC transporter; KEGG: sli:Slin_1761 hypothetical protein; SPTR: uncharacterized protein; manually curated; ABC transporter 6264868..6265509 Runella slithyformis DSM 19594 10873954 YP_004658821.1 CDS Runsl_5398 NC_015703.1 6265654 6266787 D KEGG: dfe:Dfer_2414 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6265654..6266787 Runella slithyformis DSM 19594 10873955 YP_004658822.1 CDS Runsl_5399 NC_015703.1 6266878 6267069 D COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683:IPR004104; KEGG: dfe:Dfer_1598 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; PRIAM: Glucose-fructose oxidoreductase; SPTR: Oxidoreductase domain protein; hypothetical protein 6266878..6267069 Runella slithyformis DSM 19594 10873956 YP_004658823.1 CDS Runsl_5400 NC_015703.1 6267245 6268330 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR003593:IPR012763:IPR003959; KEGG: dfe:Dfer_4930 DNA polymerase III, subunits gamma and tau; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunit gamma/ tau; glucose-fructose oxidoreductase complement(6267245..6268330) Runella slithyformis DSM 19594 10873957 YP_004658824.1 CDS Runsl_5401 NC_015703.1 6268400 6270205 R PFAM: ATPase associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, subunit gamma and tau; COGs: COG2258 conserved hypothetical protein; InterPro IPR005302; KEGG: sli:Slin_0265 MOSC domain containing protein; PFAM: Molybdenum cofactor sulfurase, C-terminal; SPTR: uncharacterized protein; DNA polymerase III subunits gamma and tau complement(6268400..6270205) Runella slithyformis DSM 19594 10873958 YP_004658825.1 CDS Runsl_5402 NC_015703.1 6270285 6270800 R PFAM: MOSC domain; COGs: COG3124 conserved hypothetical protein; InterPro IPR007431; KEGG: dfe:Dfer_1066 protein of unknown function DUF479; PFAM: Acyl carrier protein phosphodiesterase; SPTR: uncharacterized protein; MOSC domain-containing protein complement(6270285..6270800) Runella slithyformis DSM 19594 10873959 YP_004658826.1 CDS Runsl_5403 NC_015703.1 6270833 6271429 R PFAM: Protein of unknown function, DUF479; COGs: COG2131 Deoxycytidylate deaminase; InterPro IPR002125; KEGG: dfe:Dfer_1068 CMP/dCMP deaminase zinc-binding; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: CMP/dCMP deaminase zinc-binding; ACP phosphodieterase complement(6270833..6271429) Runella slithyformis DSM 19594 10873960 YP_004658827.1 CDS Runsl_5404 NC_015703.1 6271480 6271965 R PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; KEGG: sli:Slin_4939 hypothetical protein; SPTR: uncharacterized protein; CMP/dCMP deaminase zinc-binding protein complement(6271480..6271965) Runella slithyformis DSM 19594 10873961 YP_004658828.1 CDS Runsl_5405 NC_015703.1 6272048 6273187 D COGs: COG0684 Demethylmenaquinone methyltransferase; KEGG: sli:Slin_6192 demethylmenaquinone methyltransferase-like protein; SPTR: Demethylmenaquinone methyltransferase-like protein; hypothetical protein 6272048..6273187 Runella slithyformis DSM 19594 10873962 YP_004658829.1 CDS Runsl_5406 NC_015703.1 6273274 6274218 D PFAM: Demethylmenaquinone methyltransferase; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR006311:IPR013341:IPR013342; KEGG: sli:Slin_6193 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; PRIAM: Galactonate dehydratase; SPTR: Mandelate racemase/muconate lactonizing protein; demethylmenaquinone methyltransferase-like protein 6273274..6274218 Runella slithyformis DSM 19594 10873963 YP_004658830.1 CDS Runsl_5407 NC_015703.1 6274275 6275549 D PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; KEGG: lby:Lbys_3432 hypothetical protein; SPTR: uncharacterized protein; galactonate dehydratase 6274275..6275549 Runella slithyformis DSM 19594 10873964 YP_004658831.1 CDS Runsl_5408 NC_015703.1 6275612 6276148 R KEGG: lby:Lbys_3432 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(6275612..6276148) Runella slithyformis DSM 19594 10873965 YP_004658832.1 CDS Runsl_5409 NC_015703.1 6276179 6276700 R COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: sli:Slin_1730 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; hypothetical protein complement(6276179..6276700) Runella slithyformis DSM 19594 10873966 YP_004658833.1 CDS Runsl_5410 NC_015703.1 6276745 6277638 R PFAM: OmpA family; OmpA/MotB domain-containing protein complement(6276745..6277638) Runella slithyformis DSM 19594 10873967 YP_004658834.1 CDS Runsl_5411 NC_015703.1 6278082 6278411 D COGs: COG0685 5 10-methylenetetrahydrofolate reductase; InterPro IPR004620:IPR003171; KEGG: sli:Slin_1800 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase; PRIAM: Methylenetetrahydrofolate reductase (NAD(P)H); SPTR: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; hypothetical protein 6278082..6278411 Runella slithyformis DSM 19594 10873968 YP_004658835.1 CDS Runsl_5412 NC_015703.1 6278480 6279439 R PFAM: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase, prokaryotic form; COGs: COG0335 Ribosomal protein L19; HAMAP: Ribosomal protein L19; InterPro IPR001857; KEGG: sli:Slin_1454 ribosomal protein L19; PFAM: Ribosomal protein L19; SPTR: 50S ribosomal protein L19; TIGRFAM: Ribosomal protein L19; 5,10-methylenetetrahydrofolate reductase complement(6278480..6279439) Runella slithyformis DSM 19594 10873969 YP_004658836.1 CDS Runsl_5413 NC_015703.1 6279633 6280040 D PFAM: Ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type; COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: dfe:Dfer_5091 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; 50S ribosomal protein L19 6279633..6280040 Runella slithyformis DSM 19594 10873970 YP_004658837.1 CDS Runsl_5414 NC_015703.1 6280119 6280907 D PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; KEGG: dfe:Dfer_3820 hypothetical protein; SPTR: uncharacterized protein; diaminopimelate epimerase 6280119..6280907 Runella slithyformis DSM 19594 10873971 YP_004658838.1 CDS Runsl_5415 NC_015703.1 6280924 6282183 R KEGG: dfe:Dfer_3821 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(6280924..6282183) Runella slithyformis DSM 19594 10873972 YP_004658839.1 CDS Runsl_5416 NC_015703.1 6282253 6283506 R InterPro IPR013216; KEGG: sml:Smlt0631 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; hypothetical protein complement(6282253..6283506) Runella slithyformis DSM 19594 10873973 YP_004658840.1 CDS Runsl_5417 NC_015703.1 6283514 6284158 R PFAM: Methyltransferase domain; COGs: COG0703 Shikimate kinase; HAMAP: Shikimate kinase; InterPro IPR000623; KEGG: sli:Slin_2313 shikimate kinase; PFAM: Shikimate kinase; PRIAM: Shikimate kinase; SPTR: Shikimate kinase; type 11 methyltransferase complement(6283514..6284158) Runella slithyformis DSM 19594 10873974 YP_004658841.1 CDS Runsl_5418 NC_015703.1 6284441 6284956 R PFAM: Shikimate kinase; KEGG: sli:Slin_2314 DoxX family protein; SPTR: DoxX family protein; shikimate kinase complement(6284441..6284956) Runella slithyformis DSM 19594 10873975 YP_004658842.1 CDS Runsl_5419 NC_015703.1 6285024 6286112 R KEGG: dfe:Dfer_3191 hypothetical protein; SPTR: uncharacterized protein; manually curated; DoxX family protein complement(6285024..6286112) Runella slithyformis DSM 19594 10873976 YP_004658843.1 CDS Runsl_5420 NC_015703.1 6286112 6286600 R hypothetical protein complement(6286112..6286600) Runella slithyformis DSM 19594 10873977 YP_004658844.1 CDS Runsl_5421 NC_015703.1 6286591 6286782 R InterPro IPR011630; KEGG: sli:Slin_2316 hypothetical protein; PFAM: Protein of unknown function DUF1599; SPTR: uncharacterized protein; hypothetical protein complement(6286591..6286782) Runella slithyformis DSM 19594 10873978 YP_004658845.1 CDS Runsl_5422 NC_015703.1 6286841 6287392 R PFAM: Domain of Unknown Function (DUF1599); COGs: COG0294 Dihydropteroate synthase; InterPro IPR006390:IPR000489; KEGG: psn:Pedsa_3680 dihydropteroate synthase; PFAM: Dihydropteroate synthase, DHPS; PRIAM: Dihydropteroate synthase; SPTR: Dihydropteroate synthase; TIGRFAM: Dihydropteroate synthase; hypothetical protein complement(6286841..6287392) Runella slithyformis DSM 19594 10873979 YP_004658846.1 CDS Runsl_5423 NC_015703.1 6287520 6288356 D PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase; COGs: COG2259 membrane protein; InterPro IPR011637; KEGG: dfe:Dfer_3051 DoxX family protein; PFAM: DoxX; SPTR: DoxX family protein; dihydropteroate synthase 6287520..6288356 Runella slithyformis DSM 19594 10873980 YP_004658847.1 CDS Runsl_5424 NC_015703.1 6288409 6288828 R PFAM: DoxX; KEGG: cpi:Cpin_5543 alpha-L-fucosidase; PRIAM: Alpha-L-fucosidase; SPTR: Alpha-L-fucosidase; DoxX family protein complement(6288409..6288828) Runella slithyformis DSM 19594 10873981 YP_004658848.1 CDS Runsl_5425 NC_015703.1 6288957 6291464 R COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro IPR003821:IPR013512:IPR013644; KEGG: sli:Slin_5921 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase; SPTR: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; alpha-L-fucosidase complement(6288957..6291464) Runella slithyformis DSM 19594 10873982 YP_004658849.1 CDS Runsl_5426 NC_015703.1 6291852 6293018 D PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR001478:IPR004387:IPR008915; KEGG: dfe:Dfer_4131 membrane-associated zinc metalloprotease; PFAM: Peptidase M50; PDZ/DHR/GLGF; SPTR: Membrane-associated zinc metalloprotease; TIGRFAM: Peptidase M50, membrane-associated zinc metallopeptidase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 6291852..6293018 Runella slithyformis DSM 19594 10873983 YP_004658850.1 CDS Runsl_5427 NC_015703.1 6293265 6294572 D PFAM: Peptidase M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP; KEGG: dfe:Dfer_4130 hypothetical protein; SPTR: uncharacterized protein; zinc metalloprotease 6293265..6294572 Runella slithyformis DSM 19594 10873984 YP_004658851.1 CDS Runsl_5428 NC_015703.1 6294547 6295167 D HAMAP: Ribosomal protein L35; InterPro IPR001706; KEGG: sli:Slin_2217 ribosomal protein L35; PFAM: Ribosomal protein L35; SPTR: 50S ribosomal protein L35; TIGRFAM: Ribosomal protein L35; hypothetical protein 6294547..6295167 Runella slithyformis DSM 19594 10873985 YP_004658852.1 CDS Runsl_5429 NC_015703.1 6295290 6295484 D PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35; COGs: COG0292 Ribosomal protein L20; HAMAP: Ribosomal protein L20; InterPro IPR005813; KEGG: dfe:Dfer_1224 ribosomal protein L20; PFAM: Ribosomal protein L20; SPTR: 50S ribosomal protein L20; TIGRFAM: Ribosomal protein L20; 50S ribosomal protein L35 6295290..6295484 Runella slithyformis DSM 19594 10873986 YP_004658853.1 CDS Runsl_5430 NC_015703.1 6295642 6295986 D PFAM: Ribosomal protein L20; TIGRFAM: ribosomal protein L20; KEGG: sli:Slin_1510 hypothetical protein; SPTR: uncharacterized protein; 50S ribosomal protein L20 6295642..6295986 Runella slithyformis DSM 19594 10873987 YP_004658854.1 CDS Runsl_5431 NC_015703.1 6296107 6296550 D COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: fjo:Fjoh_0190 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; manually curated; hypothetical protein 6296107..6296550 Runella slithyformis DSM 19594 10873988 YP_004658855.1 CDS Runsl_5432 NC_015703.1 6296634 6297200 D PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR000531; KEGG: dfe:Dfer_3109 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; AraC family transcriptional regulator 6296634..6297200 Runella slithyformis DSM 19594 10873989 YP_004658856.1 CDS Runsl_5433 NC_015703.1 6297197 6299542 D PFAM: TonB-dependent Receptor Plug Domain; InterPro IPR006121; KEGG: dfe:Dfer_3112 heavy metal transport/detoxification protein; PFAM: Heavy metal transport/detoxification protein; SPTR: Heavy metal transport/detoxification protein; TonB-dependent receptor 6297197..6299542 Runella slithyformis DSM 19594 10873990 YP_004658857.1 CDS Runsl_5434 NC_015703.1 6299691 6300044 D PFAM: Heavy-metal-associated domain; KEGG: cpi:Cpin_5819 hypothetical protein; SPTR: uncharacterized protein; heavy metal transport/detoxification protein 6299691..6300044 Runella slithyformis DSM 19594 10873991 YP_004658858.1 CDS Runsl_5435 NC_015703.1 6300114 6302573 R PFAM: esterase; COGs: COG1278 Cold shock protein; InterPro IPR011129:IPR002059; KEGG: dfe:Dfer_0895 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding domain protein; hypothetical protein complement(6300114..6302573) Runella slithyformis DSM 19594 10873992 YP_004658859.1 CDS Runsl_5436 NC_015703.1 6302740 6302931 D PFAM: 'Cold-shock' DNA-binding domain; cold-shock DNA-binding domain-containing protein 6302740..6302931 Runella slithyformis DSM 19594 10873993 YP_004658860.1 CDS Runsl_5437 NC_015703.1 6303542 6303802 D COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR003594; KEGG: sli:Slin_1040 response regulator receiver sensor signal transduction histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; SPTR: Response regulator receiver sensor signal transduction histidine kinase; hypothetical protein 6303542..6303802 Runella slithyformis DSM 19594 10873994 YP_004658861.1 CDS Runsl_5438 NC_015703.1 6304414 6305520 D PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR018060:IPR000005; KEGG: sli:Slin_2666 AraC family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Helix-turn-helix, AraC type; SMART: Signal transduction response regulator, receiver region; Helix-turn-helix, AraC domain; SPTR: Two component transcriptional regulator, AraC family; response regulator receiver sensor signal transduction histidine kinase 6304414..6305520 Runella slithyformis DSM 19594 10873995 YP_004658862.1 CDS Runsl_5439 NC_015703.1 6306060 6306803 D PFAM: Response regulator receiver domain; Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR012506; KEGG: mtt:Ftrac_1144 YhhN family protein; PFAM: YhhN-like; SPTR: uncharacterized protein; AraC family transcriptional regulator 6306060..6306803 Runella slithyformis DSM 19594 10873996 YP_004658863.1 CDS Runsl_5440 NC_015703.1 6306872 6307534 R PFAM: YhhN-like protein; InterPro IPR017515:IPR004360; KEGG: sli:Slin_5823 methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Methylmalonyl-CoA epimerase; TIGRFAM: Methylmalonyl-CoA epimerase; hypothetical protein complement(6306872..6307534) Runella slithyformis DSM 19594 10873997 YP_004658864.1 CDS Runsl_5441 NC_015703.1 6307624 6308028 R PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase; InterPro IPR007828; KEGG: sli:Slin_5242 inositol oxygenase; PFAM: Protein of unknown function DUF706; PRIAM: Inositol oxygenase; SPTR: Inositol oxygenase; methylmalonyl-CoA epimerase complement(6307624..6308028) Runella slithyformis DSM 19594 10873998 YP_004658865.1 CDS Runsl_5442 NC_015703.1 6308324 6309250 D PFAM: Family of unknown function (DUF706); COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: dfe:Dfer_5702 transcriptional regulator, LacI family; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; inositol oxygenase 6308324..6309250 Runella slithyformis DSM 19594 10873999 YP_004658866.1 CDS Runsl_5443 NC_015703.1 6309376 6310404 D PFAM: Bacterial regulatory proteins, lacI family; family; COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: dfe:Dfer_2637 fatty acid hydroxylase; PFAM: Fatty acid hydroxylase; SPTR: Fatty acid hydroxylase; LacI family transcriptional regulator 6309376..6310404 Runella slithyformis DSM 19594 10874000 YP_004658867.1 CDS Runsl_5444 NC_015703.1 6310376 6311284 R PFAM: Fatty acid hydroxylase superfamily; COGs: COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; InterPro IPR000031; KEGG: sli:Slin_5995 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: Phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; fatty acid hydroxylase complement(6310376..6311284) Runella slithyformis DSM 19594 10874001 YP_004658868.1 CDS Runsl_5445 NC_015703.1 6311401 6311895 D PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein; InterPro IPR002482:IPR018392; KEGG: sli:Slin_5996 peptidoglycan-binding lysin domain protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Peptidoglycan-binding lysin domain protein; phosphoribosylaminoimidazole carboxylase catalytic subunit 6311401..6311895 Runella slithyformis DSM 19594 10874002 YP_004658869.1 CDS Runsl_5446 NC_015703.1 6312025 6312753 D PFAM: LysM domain; COGs: COG2908 conserved hypothetical protein; InterPro IPR004843; KEGG: sli:Slin_5686 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; peptidoglycan-binding lysin domain-containing protein 6312025..6312753 Runella slithyformis DSM 19594 10874003 YP_004658870.1 CDS Runsl_5447 NC_015703.1 6312757 6313575 R PFAM: Calcineurin-like phosphoesterase; COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); InterPro IPR020019:IPR001451; KEGG: sli:Slin_5687 sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; SPTR: Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; TIGRFAM: Sialic acid O-acyltransferase, NeuD; metallophosphoesterase complement(6312757..6313575) Runella slithyformis DSM 19594 10874004 YP_004658871.1 CDS Runsl_5448 NC_015703.1 6313750 6314382 D TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; COGs: COG1195 Recombinational DNA repair ATPase (RecF pathway); HAMAP: DNA replication and repair protein recF; InterPro IPR001238:IPR003395; KEGG: dfe:Dfer_3886 DNA replication and repair protein RecF; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: DNA replication and repair protein recF; TIGRFAM: DNA-binding, RecF; sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family 6313750..6314382 Runella slithyformis DSM 19594 10874005 YP_004658872.1 CDS Runsl_5449 NC_015703.1 6314430 6315530 R PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: recF protein; COGs: COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type alpha subunit; InterPro IPR017597:IPR001017; KEGG: sli:Slin_5509 pyruvate dehydrogenase (acetyl-transferring) E1 component, subunit alpha; PFAM: Dehydrogenase, E1 component; PRIAM: Pyruvate dehydrogenase (acetyl-transferring); SPTR: Pyruvate dehydrogenase (Acetyl-transferring) E1 component, alpha subunit; TIGRFAM: Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y; DNA replication and repair protein RecF complement(6314430..6315530) Runella slithyformis DSM 19594 10874006 YP_004658873.1 CDS Runsl_5450 NC_015703.1 6315664 6316683 D PFAM: Dehydrogenase E1 component; TIGRFAM: pyruvate dehydrogenase E1 component, alpha subunit; COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: sli:Slin_5158 hypothetical protein; PFAM: Protein of unknown function DUF140; SPTR: uncharacterized protein; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 6315664..6316683 Runella slithyformis DSM 19594 10874007 YP_004658874.1 CDS Runsl_5451 NC_015703.1 6316772 6317506 D PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000835:IPR000600; KEGG: sli:Slin_3041 ROK family protein; PFAM: ROK; HTH transcriptional regulator, MarR; PRIAM: Glucokinase; SPTR: ROK family protein; hypothetical protein 6316772..6317506 Runella slithyformis DSM 19594 10874008 YP_004658875.1 CDS Runsl_5452 NC_015703.1 6317503 6318729 R PFAM: ROK family; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: lby:Lbys_2803 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; glucokinase complement(6317503..6318729) Runella slithyformis DSM 19594 10874009 YP_004658876.1 CDS Runsl_5453 NC_015703.1 6319196 6322513 D PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: lby:Lbys_2804 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 6319196..6322513 Runella slithyformis DSM 19594 10874010 YP_004658877.1 CDS Runsl_5454 NC_015703.1 6322547 6324121 D InterPro IPR014914; KEGG: sli:Slin_2003 RES domain protein; PFAM: RES; SPTR: RES domain protein; hypothetical protein 6322547..6324121 Runella slithyformis DSM 19594 10874011 YP_004658878.1 CDS Runsl_5455 NC_015703.1 6324259 6324687 D PFAM: RES domain; InterPro IPR000866; KEGG: dfe:Dfer_2065 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; RES domain-containing protein 6324259..6324687 Runella slithyformis DSM 19594 10874012 YP_004658879.1 CDS Runsl_5456 NC_015703.1 6324871 6326295 D PFAM: AhpC/TSA family; COGs: COG1895 conserved hypothetical protein related to C-terminal domain of eukaryotic chaperone SACSIN; InterPro IPR007842; KEGG: mja:MJ_0142 hypothetical protein; PFAM: HEPN; SPTR: UPF0332 protein MJ0142; alkyl hydroperoxide reductase 6324871..6326295 Runella slithyformis DSM 19594 10874013 YP_004658880.1 CDS Runsl_5457 NC_015703.1 6326296 6326712 R PFAM: HEPN domain; InterPro IPR002934; KEGG: sli:Slin_2850 DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase; SPTR: DNA polymerase beta domain protein region; HEPN domain-containing protein complement(6326296..6326712) Runella slithyformis DSM 19594 10874014 YP_004658881.1 CDS Runsl_5458 NC_015703.1 6326696 6327019 R PFAM: Nucleotidyltransferase domain; COGs: COG3127 ABC-type transport system involved in lysophospholipase L1 biosynthesis permease component; InterPro IPR003838; KEGG: phe:Phep_1597 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; DNA polymerase beta domain-containing protein complement(6326696..6327019) Runella slithyformis DSM 19594 10874015 YP_004658882.1 CDS Runsl_5459 NC_015703.1 6327071 6329608 R PFAM: Predicted permease; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_5709 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; hypothetical protein complement(6327071..6329608) Runella slithyformis DSM 19594 10874016 YP_004658883.1 CDS Runsl_5460 NC_015703.1 6329701 6330384 R PFAM: ABC transporter; COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: dfe:Dfer_5710 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family; phosphonate-transporting ATPase complement(6329701..6330384) Runella slithyformis DSM 19594 10874017 YP_004658884.1 CDS Runsl_5461 NC_015703.1 6330494 6331186 D PFAM: GDSL-like Lipase/Acylhydrolase; InterPro IPR002860; KEGG: sli:Slin_1572 glycosyl hydrolase, BNR repeat-containing protein; PFAM: BNR repeat; SPTR: Glycosyl hydrolase, BNR repeat-containing protein; G-D-S-L family lipolytic protein 6330494..6331186 Runella slithyformis DSM 19594 10874018 YP_004658885.1 CDS Runsl_5462 NC_015703.1 6331311 6334529 D PFAM: BNR/Asp-box repeat; KEGG: chu:CHU_2294 hypothetical protein; SPTR: uncharacterized protein; glycosyl hydrolase family protein 6331311..6334529 Runella slithyformis DSM 19594 10874019 YP_004658886.1 CDS Runsl_5463 NC_015703.1 6334699 6335082 D COGs: COG2017 Galactose mutarotase; InterPro IPR008183; KEGG: cpi:Cpin_5592 aldose 1-epimerase; PFAM: Aldose 1-epimerase; SPTR: Aldose 1-epimerase; hypothetical protein 6334699..6335082 Runella slithyformis DSM 19594 10874020 YP_004658887.1 CDS Runsl_5464 NC_015703.1 6335095 6335964 R PFAM: Aldose 1-epimerase; InterPro IPR002223; KEGG: fbc:FB2170_08659 proteinase inhibitor I2, Kunitz metazoa; PFAM: Proteinase inhibitor I2, Kunitz metazoa; SMART: Proteinase inhibitor I2, Kunitz metazoa; SPTR: Proteinase inhibitor I2, Kunitz metazoa; aldose 1-epimerase complement(6335095..6335964) Runella slithyformis DSM 19594 10874021 YP_004658888.1 CDS Runsl_5465 NC_015703.1 6336035 6336289 R PFAM: Kunitz/Bovine pancreatic trypsin inhibitor domain; COGs: COG3506 conserved hypothetical protein; InterPro IPR009784; KEGG: cbk:CLL_A1994 hypothetical protein; PFAM: Protein of unknown function DUF1349; SPTR: uncharacterized protein; proteinase inhibitor I2 Kunitz metazoa complement(6336035..6336289) Runella slithyformis DSM 19594 10874022 YP_004658889.1 CDS Runsl_5466 NC_015703.1 6336398 6336982 R PFAM: Protein of unknown function (DUF1349); COGs: COG2055 Malate/L-lactate dehydrogenase; InterPro IPR003767; KEGG: phe:Phep_3438 2,3-diketo-L-gulonate reductase; PFAM: Malate/L-lactate dehydrogenase; PRIAM: 3-dehydro-L-gulonate 2-dehydrogenase; SPTR: Malate/L-lactate dehydrogenase; hypothetical protein complement(6336398..6336982) Runella slithyformis DSM 19594 10874023 YP_004658890.1 CDS Runsl_5467 NC_015703.1 6336996 6338093 R PFAM: Malate/L-lactate dehydrogenase; COGs: COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin; InterPro IPR008775; KEGG: tau:Tola_1906 phytanoyl-CoA dioxygenase; PFAM: Phytanoyl-CoA dioxygenase; SPTR: phytanoyl-CoA dioxygenase; 3-dehydro-L-gulonate 2-dehydrogenase complement(6336996..6338093) Runella slithyformis DSM 19594 10874024 YP_004658891.1 CDS Runsl_5468 NC_015703.1 6338202 6338939 R PFAM: Phytanoyl-CoA dioxygenase (PhyH); COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: fbc:FB2170_06925 transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator; phytanoyl-CoA dioxygenase complement(6338202..6338939) Runella slithyformis DSM 19594 10874025 YP_004658892.1 CDS Runsl_5469 NC_015703.1 6339138 6339986 D PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG0405 Gamma-glutamyltransferase; InterPro IPR000101; KEGG: dfe:Dfer_5278 gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase; PRIAM: Gamma-glutamyltransferase; SPTR: Gamma-glutamyltransferase; AraC family transcriptional regulator 6339138..6339986 Runella slithyformis DSM 19594 10874026 YP_004658893.1 CDS Runsl_5470 NC_015703.1 6340298 6342169 R PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase; KEGG: met:M446_7061 hypothetical protein; SPTR: uncharacterized protein; gamma-glutamyltransferase complement(6340298..6342169) Runella slithyformis DSM 19594 10874027 YP_004658894.1 CDS Runsl_5471 NC_015703.1 6342246 6343115 R TIGRFAM: TIGR02646 family protein; COGs: COG3950 ATP-binding protein involved in virulence; KEGG: met:M446_7060 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(6342246..6343115) Runella slithyformis DSM 19594 10874028 YP_004658895.1 CDS Runsl_5472 NC_015703.1 6343096 6344466 R PFAM: RecF/RecN/SMC N terminal domain; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073:IPR000383; KEGG: tsa:AciPR4_0063 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; Peptidase S15; SPTR: Alpha/beta hydrolase fold family hydrolase; hypothetical protein complement(6343096..6344466) Runella slithyformis DSM 19594 10874029 YP_004658896.1 CDS Runsl_5473 NC_015703.1 6344659 6345558 D PFAM: alpha/beta hydrolase fold; COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: sli:Slin_4966 hypothetical protein; PFAM: Protein of unknown function DUF58; SPTR: uncharacterized protein; alpha/beta hydrolase 6344659..6345558 Runella slithyformis DSM 19594 10874030 YP_004658897.1 CDS Runsl_5474 NC_015703.1 6345626 6346957 R PFAM: Protein of unknown function DUF58; COGs: COG0009 translation factor (SUA5); InterPro IPR004388:IPR006070; KEGG: sli:Slin_1614 SUA5/YciO/YrdC/YwlC family protein; PFAM: Sua5/YciO/YrdC, N-terminal; SPTR: Sua5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; hypothetical protein complement(6345626..6346957) Runella slithyformis DSM 19594 10874031 YP_004658898.1 CDS Runsl_5475 NC_015703.1 6347001 6347618 R PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: dfe:Dfer_5016 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; Sua5/YciO/YrdC/YwlC family protein complement(6347001..6347618) Runella slithyformis DSM 19594 10874032 YP_004658899.1 CDS Runsl_5476 NC_015703.1 6347877 6348881 R PFAM: Glycosyl transferase 2; COGs: COG1295 membrane protein; InterPro IPR017039:IPR004664; KEGG: dfe:Dfer_5015 ribonuclease BN; PFAM: Ribonuclease BN-related; SPTR: Ribonuclease BN; TIGRFAM: Ribonuclease BN; family 2 glycosyl transferase complement(6347877..6348881) Runella slithyformis DSM 19594 10874033 YP_004658900.1 CDS Runsl_5477 NC_015703.1 6349280 6350194 R PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN); COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_1720 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; ribonuclease BN complement(6349280..6350194) Runella slithyformis DSM 19594 10874034 YP_004658901.1 CDS Runsl_5478 NC_015703.1 6350368 6352650 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG0824 thioesterase; InterPro IPR006684:IPR006683; KEGG: dfe:Dfer_5014 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein; TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; TonB-dependent receptor complement(6350368..6352650) Runella slithyformis DSM 19594 10874035 YP_004658902.1 CDS Runsl_5479 NC_015703.1 6352919 6353353 R PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family; COGs: COG1559 periplasmic solute-binding protein; InterPro IPR003770; KEGG: sli:Slin_1618 aminodeoxychorismate lyase; PFAM: Uncharacterised protein family YceG-like; SPTR: Aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family YceG-like; 4-hydroxybenzoyl-CoA thioesterase complement(6352919..6353353) Runella slithyformis DSM 19594 10874036 YP_004658903.1 CDS Runsl_5480 NC_015703.1 6353463 6354506 R PFAM: YceG-like family; TIGRFAM: conserved hypothetical protein, YceG family; KEGG: dfe:Dfer_2763 hypothetical protein; SPTR: uncharacterized protein; aminodeoxychorismate lyase complement(6353463..6354506) Runella slithyformis DSM 19594 10874037 YP_004658904.1 CDS Runsl_5481 NC_015703.1 6355008 6355571 D PFAM: DinB family; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: msv:Mesil_2652 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; hypothetical protein 6355008..6355571 Runella slithyformis DSM 19594 10874038 YP_004658905.1 CDS Runsl_5482 NC_015703.1 6355617 6356486 D PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase 6355617..6356486 Runella slithyformis DSM 19594 10874039 YP_004658906.1 CDS Runsl_5483 NC_015703.1 6356534 6356725 D COGs: COG3511 Phospholipase C; InterPro IPR006311:IPR017767:IPR007312:IPR008475; KEGG: cpi:Cpin_1336 phospholipase C, phosphocholine-specific; PFAM: Phosphoesterase; Protein of unknown function DUF756; PRIAM: Phospholipase C; SPTR: Phospholipase C, phosphocholine-specific; TIGRFAM: Phospholipase C, phosphocholine-specific; Twin-arginine translocation pathway, signal sequence; hypothetical protein 6356534..6356725 Runella slithyformis DSM 19594 10874040 YP_004658907.1 CDS Runsl_5484 NC_015703.1 6356920 6359496 D PFAM: Phosphoesterase; Domain of unknown function (DUF756); TIGRFAM: phospholipase C, phosphocholine-specific, Pseudomonas-type; InterPro IPR003158; KEGG: aba:Acid345_2503 hypothetical protein; PFAM: Photosynthetic reaction centre, cytochrome c subunit; SPTR: uncharacterized protein; phospholipase C, phosphocholine-specific 6356920..6359496 Runella slithyformis DSM 19594 10874041 YP_004658908.1 CDS Runsl_5485 NC_015703.1 6359893 6360411 D PFAM: Photosynthetic reaction centre cytochrome C subunit; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307:IPR011418; KEGG: sli:Slin_3432 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; AP endonuclease, family 2, C-terminal; SPTR: Xylose isomerase domain protein TIM barrel; photosynthetic reaction centre cytochrome c subunit 6359893..6360411 Runella slithyformis DSM 19594 10874042 YP_004658909.1 CDS Runsl_5486 NC_015703.1 6360531 6361583 R PFAM: AP endonuclease 2 C terminus; Xylose isomerase-like TIM barrel; Prodigal; manually curated; xylose isomerase domain-containing protein complement(6360531..6361583) Runella slithyformis DSM 19594 10874043 YP_004658910.1 CDS Runsl_5488 NC_015703.1 6362041 6363165 R PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; InterPro IPR011701; KEGG: dfe:Dfer_5059 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; oxidoreductase domain-containing protein complement(6362041..6363165) Runella slithyformis DSM 19594 10874045 YP_004658911.1 CDS Runsl_5489 NC_015703.1 6363467 6364693 D PFAM: Major Facilitator Superfamily; InterPro IPR019734:IPR001440; KEGG: sli:Slin_3025 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; major facilitator superfamily protein 6363467..6364693 Runella slithyformis DSM 19594 10874046 YP_004658912.1 CDS Runsl_5490 NC_015703.1 6364926 6365636 R PFAM: Tetratricopeptide repeat; KEGG: sli:Slin_5740 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(6364926..6365636) Runella slithyformis DSM 19594 10874047 YP_004658913.1 CDS Runsl_5491 NC_015703.1 6365824 6366486 D COGs: COG0580 Glycerol uptake facilitator and related permease (Major Intrinsic Protein Family); InterPro IPR000425; KEGG: sli:Slin_5936 major intrinsic protein; PFAM: Major intrinsic protein; SPTR: Major intrinsic protein; hypothetical protein 6365824..6366486 Runella slithyformis DSM 19594 10874048 YP_004658914.1 CDS Runsl_5492 NC_015703.1 6366587 6367285 R PFAM: Major intrinsic protein; TIGRFAM: MIP family channel proteins; COGs: COG4993 Glucose dehydrogenase; InterProIPR018391:IPR019551:IPR002372:IPR019556:IPR 003088; KEGG: dfe:Dfer_4957 pyrrolo-quinoline quinone; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal; Cytochrome c, class I; PRIAM: Quinoprotein glucose dehydrogenase; SPTR: Pyrrolo-quinoline quinone; major intrinsic protein complement(6366587..6367285) Runella slithyformis DSM 19594 10874049 YP_004658915.1 CDS Runsl_5493 NC_015703.1 6367392 6369503 R PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus; Cytochrome c; PQQ enzyme repeat; COGs: COG0015 Adenylosuccinate lyase; InterPro IPR004769:IPR000362:IPR013539; KEGG: sli:Slin_5955 adenylosuccinate lyase; PFAM: Adenylosuccinate lyase C-terminal; Fumarate lyase; PRIAM: Adenylosuccinate lyase; SPTR: Adenylosuccinate lyase; TIGRFAM: Adenylosuccinate lyase; quinoprotein glucose dehydrogenase complement(6367392..6369503) Runella slithyformis DSM 19594 10874050 YP_004658916.1 CDS Runsl_5494 NC_015703.1 6369608 6370951 D PFAM: Lyase; Adenylosuccinate lyase C-terminal; TIGRFAM: adenylosuccinate lyase; COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: mtt:Ftrac_1361 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PRIAM: Nitrilase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; adenylosuccinate lyase 6369608..6370951 Runella slithyformis DSM 19594 10874051 YP_004658917.1 CDS Runsl_5495 NC_015703.1 6371077 6372009 R PFAM: Carbon-nitrogen hydrolase; COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterPro IPR005814; KEGG: dfe:Dfer_3092 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: Aminotransferase class-III; nitrilase complement(6371077..6372009) Runella slithyformis DSM 19594 10874052 YP_004658918.1 CDS Runsl_5496 NC_015703.1 6372012 6373370 R PFAM: Aminotransferase class-III; COGs: COG0628 permease; InterPro IPR002549; KEGG: cpi:Cpin_6357 hypothetical protein; PFAM: Uncharacterised protein family UPF0118; SPTR: Transport protein; acetylornithine transaminase complement(6372012..6373370) Runella slithyformis DSM 19594 10874053 YP_004658919.1 CDS Runsl_5497 NC_015703.1 6373516 6374610 R PFAM: Domain of unknown function DUF20; COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873; KEGG: chu:CHU_3595 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: Long-chain-fatty-acid--CoA ligase (Acyl-CoA synthetase); hypothetical protein complement(6373516..6374610) Runella slithyformis DSM 19594 10874054 YP_004658920.1 CDS Runsl_5498 NC_015703.1 6374945 6376714 D PFAM: AMP-binding enzyme; COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011110:IPR011123:IPR011712:IPR003594; KEGG: sli:Slin_5256 histidine kinase; PFAM: Two component regulator three Y; Two component regulator propeller; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; ATP-binding region, ATPase-like; SPTR: Histidine kinase; long-chain-fatty-acid--CoA ligase 6374945..6376714 Runella slithyformis DSM 19594 10874055 YP_004658921.1 CDS Runsl_5499 NC_015703.1 6376794 6379898 R PFAM: Y_Y_Y domain; Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Two component regulator propeller; COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: dfe:Dfer_0193 glycoside hydrolase 43; PFAM: Glycoside hydrolase, family 43; SPTR: Glycoside hydrolase 43; signal transduction histidine kinase complement(6376794..6379898) Runella slithyformis DSM 19594 10874056 YP_004658922.1 CDS Runsl_5500 NC_015703.1 6379966 6380913 R PFAM: Glycosyl hydrolases family 43; COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: dfe:Dfer_2712 peptidase U61 LD-carboxypeptidase A; PFAM: Peptidase S66, LD-carboxypeptidase A; SPTR: Peptidase U61 LD-carboxypeptidase A; glycoside hydrolase complement(6379966..6380913) Runella slithyformis DSM 19594 10874057 YP_004658923.1 CDS Runsl_5501 NC_015703.1 6380983 6381888 R PFAM: LD-carboxypeptidase; COGs: COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); InterPro IPR001457; KEGG: dfe:Dfer_4038 NADH-ubiquinone/plastoquinone oxidoreductase chain 6; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; SPTR: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; peptidase U61 complement(6380983..6381888) Runella slithyformis DSM 19594 10874058 YP_004658924.1 CDS Runsl_5502 NC_015703.1 6381955 6382482 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: dfe:Dfer_3391 hypothetical protein; SPTR: uncharacterized protein; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 complement(6381955..6382482) Runella slithyformis DSM 19594 10874059 YP_004658925.1 CDS Runsl_5503 NC_015703.1 6382554 6383045 R COGs: COG0541 Signal recognition particle GTPase; InterProIPR003593:IPR004780:IPR013822:IPR000897:IPR 004125; KEGG: dfe:Dfer_3390 signal recognition particle protein; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; SMART: ATPase, AAA+ type, core; SPTR: Signal recognition particle protein; TIGRFAM: Signal recognition particle, SRP; hypothetical protein complement(6382554..6383045) Runella slithyformis DSM 19594 10874060 YP_004658926.1 CDS Runsl_5504 NC_015703.1 6383091 6384404 R PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein; InterPro IPR005181; KEGG: sli:Slin_5097 hypothetical protein; PFAM: Protein of unknown function DUF303, acetylesterase SPTR: uncharacterized protein; signal recognition particle protein complement(6383091..6384404) Runella slithyformis DSM 19594 10874061 YP_004658927.1 CDS Runsl_5505 NC_015703.1 6384551 6386722 D PFAM: Domain of unknown function (DUF303); COGs: COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); HAMAP: NAD(P)H-quinone oxidoreductase subunit 3; InterPro IPR000440; KEGG: sli:Slin_5098 NADH-ubiquinone/plastoquinone oxidoreductase chain 3; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3; SPTR: NADH-quinone oxidoreductase subunit; hypothetical protein 6384551..6386722 Runella slithyformis DSM 19594 10874062 YP_004658928.1 CDS Runsl_5506 NC_015703.1 6386870 6387238 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; COGs: COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase; HAMAP: NAD(P)H-quinone oxidoreductase subunit K; InterPro IPR006138:IPR006137; KEGG: sli:Slin_5099 NADH-quinone oxidoreductase subunit beta; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit B 2; TIGRFAM: NADH:ubiquinone oxidoreductase, 20kDa subunit; NAD(P)H-quinone oxidoreductase subunit 3 6386870..6387238 Runella slithyformis DSM 19594 10874063 YP_004658929.1 CDS Runsl_5507 NC_015703.1 6387325 6387870 D PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; COGs: COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit J; InterPro IPR010218:IPR001268; KEGG: dfe:Dfer_4086 NADH dehydrogenase (ubiquinone) 30 kDa subunit; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit; SPTR: NADH-quinone oxidoreductase subunit C 2; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; NAD(P)H-quinone oxidoreductase subunit K 6387325..6387870 Runella slithyformis DSM 19594 10874064 YP_004658930.1 CDS Runsl_5508 NC_015703.1 6387962 6388462 D PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; COGs: COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; HAMAP: NAD(P)H-quinone oxidoreductase subunit H; InterPro IPR001135; KEGG: sli:Slin_5101 NADH dehydrogenase (quinone); PFAM: NADH-quinone oxidoreductase, subunit D; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH dehydrogenase (Quinone); NAD(P)H-quinone oxidoreductase subunit J 6387962..6388462 Runella slithyformis DSM 19594 10874065 YP_004658931.1 CDS Runsl_5509 NC_015703.1 6388540 6389772 D PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; TIGRFAM: NADH dehydrogenase I, D subunit; COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023; KEGG: dfe:Dfer_4084 NADH-quinone oxidoreductase, E subunit; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; NAD(P)H-quinone oxidoreductase subunit H 6388540..6389772 Runella slithyformis DSM 19594 10874066 YP_004658932.1 CDS Runsl_5510 NC_015703.1 6389785 6390285 D PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterPro IPR011537:IPR011538:IPR019554:IPR019575; KEGG: sli:Slin_5103 NADH-quinone oxidoreductase, F subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH ubiquinone oxidoreductase, F subunit; NADH-quinone oxidoreductase subunit E 6389785..6390285 Runella slithyformis DSM 19594 10874067 YP_004658933.1 CDS Runsl_5511 NC_015703.1 6390306 6391646 D PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain; TIGRFAM: NADH-quinone oxidoreductase, F subunit; COGs: COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); InterPro IPR001041:IPR019574; KEGG: dfe:Dfer_4082 ferredoxin; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; PRIAM: NADH dehydrogenase (quinone); SPTR: Ferredoxin; NADH-quinone oxidoreductase subunit F 6390306..6391646 Runella slithyformis DSM 19594 10874068 YP_004658934.1 CDS Runsl_5512 NC_015703.1 6391678 6392769 D PFAM: 2Fe-2S iron-sulfur cluster binding domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; COGs: COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); HAMAP: NAD(P)H-quinone oxidoreductase subunit 1; InterPro IPR001694; KEGG: sli:Slin_5105 NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone oxidoreductase, subunit 1; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit H 2; NADH dehydrogenase (quinone) 6391678..6392769 Runella slithyformis DSM 19594 10874069 YP_004658935.1 CDS Runsl_5513 NC_015703.1 6392830 6393927 D PFAM: NADH dehydrogenase; COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); HAMAP: NADH-quinone oxidoreductase, chain I; InterPro IPR010226:IPR001450; KEGG: dfe:Dfer_4080 NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit I; TIGRFAM: NADH-quinone oxidoreductase, chain I; NAD(P)H-quinone oxidoreductase subunit 1 6392830..6393927 Runella slithyformis DSM 19594 10874070 YP_004658936.1 CDS Runsl_5514 NC_015703.1 6393995 6394573 D PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I; COGs: COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); InterPro IPR001457; KEGG: dfe:Dfer_4079 NADH-ubiquinone/plastoquinone oxidoreductase chain 6; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; SPTR: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; NAD(P)H-quinone oxidoreductase subunit I 6393995..6394573 Runella slithyformis DSM 19594 10874071 YP_004658937.1 CDS Runsl_5515 NC_015703.1 6394645 6395190 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; COGs: COG4335 DNA alkylation repair protein; KEGG: cpi:Cpin_5072 heat domain containing protein; SPTR: HEAT domain containing protein; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 6394645..6395190 Runella slithyformis DSM 19594 10874072 YP_004658938.1 CDS Runsl_5516 NC_015703.1 6395260 6396360 R COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR001753:IPR006176:IPR006108; KEGG: sli:Slin_6109 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; PRIAM: 3-hydroxybutyryl-CoA epimerase; SPTR: 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; heat domain-containing protein complement(6395260..6396360) Runella slithyformis DSM 19594 10874073 YP_004658939.1 CDS Runsl_5517 NC_015703.1 6396931 6399099 R PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR002155; KEGG: sli:Slin_6110 acetyl-CoA acetyltransferase; PRIAM: Acetyl-CoA C-acyltransferase; SPTR: Acetyl-CoA acetyltransferase; TIGRFAM: Thiolase; 3-hydroxybutyryl-CoA epimerase complement(6396931..6399099) Runella slithyformis DSM 19594 10874074 YP_004658940.1 CDS Runsl_5518 NC_015703.1 6399139 6400344 R PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; KEGG: sli:Slin_1607 hypothetical protein; SPTR: uncharacterized protein; acetyl-CoA acetyltransferase complement(6399139..6400344) Runella slithyformis DSM 19594 10874075 YP_004658941.1 CDS Runsl_5519 NC_015703.1 6400473 6401033 R COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: sli:Slin_3474 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; hypothetical protein complement(6400473..6401033) Runella slithyformis DSM 19594 10874076 YP_004658942.1 CDS Runsl_5520 NC_015703.1 6401317 6402564 R PFAM: Major Facilitator Superfamily; InterPro IPR010496; KEGG: sli:Slin_4772 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; major facilitator superfamily protein complement(6401317..6402564) Runella slithyformis DSM 19594 10874077 YP_004658943.1 CDS Runsl_5521 NC_015703.1 6402577 6404367 R PFAM: PA14 domain; Domain of Unknown Function (DUF1080); InterPro IPR013078; KEGG: shg:Sph21_1181 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase; hypothetical protein complement(6402577..6404367) Runella slithyformis DSM 19594 10874078 YP_004658944.1 CDS Runsl_5522 NC_015703.1 6404504 6405382 R PFAM: Phosphoglycerate mutase; COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; InterPro IPR005750:IPR001986; KEGG: dfe:Dfer_4252 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; PRIAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; SPTR:UDP-N-acetylglucosamine1-carboxyvinyltransfera se; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; phosphoglycerate mutase complement(6404504..6405382) Runella slithyformis DSM 19594 10874079 YP_004658947.1 CDS Runsl_5525 NC_015703.1 6407606 6408304 D COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: fba:FIC_01768 beta-lactamase-like protein; SPTR: Beta-lactamase-like protein; hypothetical protein 6407606..6408304 Runella slithyformis DSM 19594 10874082 YP_004658948.1 CDS Runsl_5526 NC_015703.1 6408401 6409249 R PFAM: Metallo-beta-lactamase superfamily; COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 013656:IPR013655; KEGG: fjo:Fjoh_3360 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-3; PAS fold-4; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAC motif; PAS; SPTR: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS; beta-lactamase-like protein complement(6408401..6409249) Runella slithyformis DSM 19594 10874083 YP_004658949.1 CDS Runsl_5527 NC_015703.1 6409298 6412534 R PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR000014:IPR003661:IPR003594; KEGG: cyj:Cyan7822_2525 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; PAS/PAC sensor signal transduction histidine kinase complement(6409298..6412534) Runella slithyformis DSM 19594 10874084 YP_004658950.1 CDS Runsl_5528 NC_015703.1 6412984 6414123 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR003661:IPR003594:IPR001789:IPR000014:IPR 001610:IPR013656:IPR013655; KEGG: npu:Npun_F2908 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; PAS fold-4; PAS fold-3; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; PAS/PAC sensor signal transduction histidine kinase 6412984..6414123 Runella slithyformis DSM 19594 10874085 YP_004658951.1 CDS Runsl_5529 NC_015703.1 6414750 6418592 R PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; multi-sensor signal transduction histidine kinase complement(6414750..6418592) Runella slithyformis DSM 19594 10874086 YP_004658952.1 CDS Runsl_5530 NC_015703.1 6419562 6420323 R PFAM: Metallo-beta-lactamase superfamily; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: sli:Slin_3276 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; beta-lactamase complement(6419562..6420323) Runella slithyformis DSM 19594 10874088 YP_004658953.1 CDS Runsl_5531 NC_015703.1 6420399 6420776 R PFAM: Response regulator receiver domain; KEGG: rrs:RoseRS_2469 cell wall anchor domain-containing protein; SPTR: LPXTG-motif cell wall anchor domain; response regulator receiver protein complement(6420399..6420776) Runella slithyformis DSM 19594 10874089 YP_004658954.1 CDS Runsl_5532 NC_015703.1 6420988 6421824 R KEGG: ppn:Palpr_0817 TonB-dependent receptor plug; SPTR: OmpA-related protein; hypothetical protein complement(6420988..6421824) Runella slithyformis DSM 19594 10874090 YP_004658955.1 CDS Runsl_5533 NC_015703.1 6421863 6425225 R COGs: COG0313 methyltransferase; HAMAP: Ribosomal RNA small subunit methyltransferase I; InterPro IPR008189:IPR000878; KEGG: dfe:Dfer_4999 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; PFAM: Tetrapyrrole methylase; SPTR: Ribosomal RNA small subunit methyltransferase I; TIGRFAM: Uncharacterised protein family UPF0011; TonB-dependent receptor plug complement(6421863..6425225) Runella slithyformis DSM 19594 10874091 YP_004658956.1 CDS Runsl_5534 NC_015703.1 6425600 6426274 D PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family; KEGG: dfe:Dfer_4998 hypothetical protein; SPTR: uncharacterized protein; ribosomal RNA small subunit methyltransferase I 6425600..6426274 Runella slithyformis DSM 19594 10874092 YP_004658957.1 CDS Runsl_5535 NC_015703.1 6426396 6427601 D COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase; InterPro IPR000760; KEGG: dfe:Dfer_4997 inositol-phosphate phosphatase; PFAM: Inositol monophosphatase; SPTR: Inositol-phosphate phosphatase; hypothetical protein 6426396..6427601 Runella slithyformis DSM 19594 10874093 YP_004658958.1 CDS Runsl_5536 NC_015703.1 6427662 6428510 D PFAM: Inositol monophosphatase; COGs: COG3386 Gluconolactonase; InterPro IPR000801:IPR013658; KEGG: plm:Plim_2162 SMP-30/gluconolaconase/LRE domain protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; esterase; SPTR: SMP-30/Gluconolaconase/LRE domain protein; inositol monophosphatase 6427662..6428510 Runella slithyformis DSM 19594 10874094 YP_004658959.1 CDS Runsl_5537 NC_015703.1 6428645 6430405 D PFAM: SMP-30/Gluconolaconase/LRE-like region; esterase; COGs: COG3182 Uncharacterized iron-regulated membrane protein; InterPro IPR005625; KEGG: sli:Slin_1573 PepSY-associated TM helix domain protein; PFAM: PepSY-associated TM helix; SPTR: PepSY-associated TM helix domain protein; SMP-30/gluconolaconase/LRE-like region-containing protein 6428645..6430405 Runella slithyformis DSM 19594 10874095 YP_004658960.1 CDS Runsl_5538 NC_015703.1 6430618 6431694 D PFAM: PepSY-associated TM helix; KEGG: sli:Slin_0961 hypothetical protein; SPTR: uncharacterized protein; PepSY-associated TM helix domain-containing protein 6430618..6431694 Runella slithyformis DSM 19594 10874096 YP_004658961.1 CDS Runsl_5539 NC_015703.1 6431698 6433866 R PFAM: Planctomycete cytochrome C; InterPro IPR006311:IPR010869; KEGG: dfe:Dfer_1977 protein of unknown function DUF1501; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein; hypothetical protein complement(6431698..6433866) Runella slithyformis DSM 19594 10874097 YP_004658962.1 CDS Runsl_5540 NC_015703.1 6433947 6435401 R PFAM: Protein of unknown function (DUF1501); InterPro IPR011429:IPR011444; KEGG: sli:Slin_0959 hypothetical protein; PFAM: Protein of unknown function DUF1549; Cytochrome C, Planctomycete; SPTR: uncharacterized protein; hypothetical protein complement(6433947..6435401) Runella slithyformis DSM 19594 10874098 YP_004658963.1 CDS Runsl_5541 NC_015703.1 6435423 6437756 R PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553); InterPro IPR006311:IPR010869; KEGG: sli:Slin_0958 hypothetical protein; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein; manually curated; hypothetical protein complement(6435423..6437756) Runella slithyformis DSM 19594 10874099 YP_004658964.1 CDS Runsl_5542 NC_015703.1 6437766 6439199 R PFAM: Protein of unknown function (DUF1501); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; InterPro IPR011429:IPR011444; KEGG: sli:Slin_0957 hypothetical protein; PFAM: Protein of unknown function DUF1549; Cytochrome C, Planctomycete; SPTR: uncharacterized protein; hypothetical protein complement(6437766..6439199) Runella slithyformis DSM 19594 10874100 YP_004658965.1 CDS Runsl_5543 NC_015703.1 6439549 6441906 R PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553); InterPro IPR012944; KEGG: sli:Slin_0956 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; hypothetical protein complement(6439549..6441906) Runella slithyformis DSM 19594 10874101 YP_004658966.1 CDS Runsl_5544 NC_015703.1 6442059 6443561 R PFAM: SusD family; InterPro IPR012910:IPR000531; KEGG: sli:Slin_0955 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; RagB/SusD domain-containing protein complement(6442059..6443561) Runella slithyformis DSM 19594 10874102 YP_004658967.1 CDS Runsl_5545 NC_015703.1 6443574 6446642 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: phe:Phep_3870 lipase; SPTR: uncharacterized protein; TonB-dependent receptor plug complement(6443574..6446642) Runella slithyformis DSM 19594 10874103 YP_004658968.1 CDS Runsl_5546 NC_015703.1 6447226 6447933 R COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_4887 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; lipase complement(6447226..6447933) Runella slithyformis DSM 19594 10874104 YP_004658969.1 CDS Runsl_5547 NC_015703.1 6448261 6448842 D PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: sli:Slin_4886 hypothetical protein; SPTR: uncharacterized protein; ECF subfamily RNA polymerase sigma-24 subunit 6448261..6448842 Runella slithyformis DSM 19594 10874105 YP_004658970.1 CDS Runsl_5548 NC_015703.1 6448817 6450466 D COGs: COG0158 Fructose-1 6-bisphosphatase; HAMAP: Fructose-1,6-bisphosphatase; InterPro IPR000146; KEGG: dfe:Dfer_4096 inositol phosphatase/fructose-16-bisphosphatase; PFAM: Fructose-1,6-bisphosphatase; PRIAM: Fructose-bisphosphatase; SPTR: Fructose-1,6-bisphosphatase class 1; hypothetical protein 6448817..6450466 Runella slithyformis DSM 19594 10874106 YP_004658971.1 CDS Runsl_5549 NC_015703.1 6450474 6451514 R PFAM: Fructose-1-6-bisphosphatase; COGs: COG3001 conserved hypothetical protein; InterPro IPR016477; KEGG: sli:Slin_5692 fructosamine/ketosamine-3-kinase; PFAM: Fructosamine/Ketosamine-3-kinase; SPTR: Fructosamine/Ketosamine-3-kinase; fructose-1,6-bisphosphatase class 1 complement(6450474..6451514) Runella slithyformis DSM 19594 10874107 YP_004658972.1 CDS Runsl_5550 NC_015703.1 6451638 6452525 R PFAM: Fructosamine kinase; COGs: COG2377 molecular chaperone distantly related to HSP70-fold metalloprotease; HAMAP: Anhydro-N-acetylmuramic acid kinase; InterPro IPR005338; KEGG: sli:Slin_5693 hypothetical protein; PFAM: Anhydro-N-acetylmuramic acid kinase; SPTR: Anhydro-N-acetylmuramic acid kinase; fructosamine/Ketosamine-3-kinase complement(6451638..6452525) Runella slithyformis DSM 19594 10874108 YP_004658973.1 CDS Runsl_5551 NC_015703.1 6452585 6453781 D PFAM: Uncharacterised protein family (UPF0075); InterPro IPR001478; KEGG: sli:Slin_5609 PDZ/DHR/GLGF domain protein; PFAM: PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; SPTR: PDZ/DHR/GLGF domain protein; anhydro-N-acetylmuramic acid kinase 6452585..6453781 Runella slithyformis DSM 19594 10874109 YP_004658974.1 CDS Runsl_5552 NC_015703.1 6453867 6455123 R PFAM: PDZ domain (Also known as DHR or GLGF); COGs: COG0149 Triosephosphate isomerase; InterPro IPR000652; KEGG: sli:Slin_5608 triosephosphate isomerase; PFAM: Triosephosphate isomerase; PRIAM: Triose-phosphate isomerase; SPTR: Triosephosphate isomerase; TIGRFAM: Triosephosphate isomerase; PDZ/DHR/GLGF domain-containing protein complement(6453867..6455123) Runella slithyformis DSM 19594 10874110 YP_004658975.1 CDS Runsl_5553 NC_015703.1 6455374 6456138 D PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase; KEGG: sli:Slin_0764 hypothetical protein; SPTR: uncharacterized protein; triosephosphate isomerase 6455374..6456138 Runella slithyformis DSM 19594 10874111 YP_004658976.1 CDS Runsl_5554 NC_015703.1 6456293 6457390 D COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: hmg:100202455 similar to Nitrilase homolog 1; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; hypothetical protein 6456293..6457390 Runella slithyformis DSM 19594 10874112 YP_004658977.1 CDS Runsl_5555 NC_015703.1 6457467 6458240 R PFAM: Carbon-nitrogen hydrolase; COGs: COG3540 Phosphodiesterase/alkaline phosphatase D; KEGG: sli:Slin_0226 phosphodiesterase/alkaline phosphatase D; SPTR: Phosphodiesterase/alkaline phosphatase D; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(6457467..6458240) Runella slithyformis DSM 19594 10874113 YP_004658978.1 CDS Runsl_5556 NC_015703.1 6458267 6459580 R PFAM: PhoD-like phosphatase; InterPro IPR013216; KEGG: sli:Slin_3133 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; phosphodiesterase/alkaline phosphatase D complement(6458267..6459580) Runella slithyformis DSM 19594 10874114 YP_004658979.1 CDS Runsl_5557 NC_015703.1 6459758 6460492 D PFAM: Methyltransferase domain; COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR002986:IPR000183; KEGG: sli:Slin_0227 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; PRIAM: Diaminopimelate decarboxylase; SPTR: Diaminopimelate decarboxylase; TIGRFAM: Diaminopimelate decarboxylase; type 11 methyltransferase 6459758..6460492 Runella slithyformis DSM 19594 10874115 YP_004658980.1 CDS Runsl_5558 NC_015703.1 6460588 6461850 D PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase; COGs: COG0217 conserved hypothetical protein; HAMAP: Protein of unknown function DUF28; InterPro IPR002876; KEGG: sli:Slin_0228 hypothetical protein; PFAM: Protein of unknown function DUF28; SPTR: UPF0082 protein Slin_0228; TIGRFAM: Protein of unknown function DUF28; diaminopimelate decarboxylase 6460588..6461850 Runella slithyformis DSM 19594 10874116 YP_004658981.1 CDS Runsl_5559 NC_015703.1 6461875 6462588 D PFAM: Domain of unknown function DUF28; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family; COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA dimethylallyltransferase; InterPro IPR018022:IPR002627; KEGG: sli:Slin_0297 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: tRNA dimethylallyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; hypothetical protein 6461875..6462588 Runella slithyformis DSM 19594 10874117 YP_004658982.1 CDS Runsl_5560 NC_015703.1 6462674 6463606 R PFAM: IPP transferase; TIGRFAM: tRNA dimethylallyltransferase; KEGG: phe:Phep_2286 hypothetical protein; SPTR: uncharacterized protein; tRNA dimethylallyltransferase complement(6462674..6463606) Runella slithyformis DSM 19594 10874118 YP_004658983.1 CDS Runsl_5561 NC_015703.1 6463603 6464022 R KEGG: dfe:Dfer_2921 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(6463603..6464022) Runella slithyformis DSM 19594 10874119 YP_004658984.1 CDS Runsl_5562 NC_015703.1 6464195 6464872 D hypothetical protein 6464195..6464872 Runella slithyformis DSM 19594 10874120 YP_004658985.1 CDS Runsl_5563 NC_015703.1 6465123 6465740 R COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR005790:IPR010372; KEGG: dfe:Dfer_1065 DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; SPTR: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; hypothetical protein complement(6465123..6465740) Runella slithyformis DSM 19594 10874121 YP_004658986.1 CDS Runsl_5564 NC_015703.1 6465983 6467005 R PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; KEGG: dfe:Dfer_4777 hypothetical protein; SPTR: uncharacterized protein; DNA polymerase III subunit delta complement(6465983..6467005) Runella slithyformis DSM 19594 10874122 YP_004658987.1 CDS Runsl_5565 NC_015703.1 6467095 6468393 R COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: sli:Slin_3374 peptidase U61 LD-carboxypeptidase A; PFAM: Peptidase S66, LD-carboxypeptidase A; SPTR: Peptidase U61 LD-carboxypeptidase A; hypothetical protein complement(6467095..6468393) Runella slithyformis DSM 19594 10874123 YP_004658988.1 CDS Runsl_5566 NC_015703.1 6468491 6469516 D PFAM: LD-carboxypeptidase; KEGG: sli:Slin_5539 hypothetical protein; SPTR: uncharacterized protein; peptidase U61 6468491..6469516 Runella slithyformis DSM 19594 10874124 YP_004658989.1 CDS Runsl_5567 NC_015703.1 6469599 6470582 D COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593:IPR001140:IPR003439; KEGG: sli:Slin_5540 ABC transporter; PFAM: ABC transporter-like; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; hypothetical protein 6469599..6470582 Runella slithyformis DSM 19594 10874125 YP_004658990.1 CDS Runsl_5568 NC_015703.1 6470658 6472466 D PFAM: ABC transporter transmembrane region; ABC transporter; InterPro IPR007165; KEGG: dfe:Dfer_4241 membrane protein of unknown function; PFAM: Membrane protein of unknown function; SPTR: uncharacterized protein; xenobiotic-transporting ATPase 6470658..6472466 Runella slithyformis DSM 19594 10874126 YP_004658991.1 CDS Runsl_5569 NC_015703.1 6472562 6472900 D PFAM: Membrane protein of unknown function; hypothetical protein 6472562..6472900 Runella slithyformis DSM 19594 10874127 YP_004658992.1 CDS Runsl_5570 NC_015703.1 6472937 6473278 D KEGG: sli:Slin_2304 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6472937..6473278 Runella slithyformis DSM 19594 10874128 YP_004658993.1 CDS Runsl_5571 NC_015703.1 6473200 6473736 R KEGG: sli:Slin_1067 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(6473200..6473736) Runella slithyformis DSM 19594 10874129 YP_004658994.1 CDS Runsl_5572 NC_015703.1 6474126 6474662 R COGs: COG4757 alpha/beta hydrolase; KEGG: swp:swp_1822 alpha/beta hydrolase; SPTR: Alpha/beta hydrolase; hypothetical protein complement(6474126..6474662) Runella slithyformis DSM 19594 10874130 YP_004658995.1 CDS Runsl_5573 NC_015703.1 6474668 6475621 R InterPro IPR001647; KEGG: pau:PA14_48190 transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulatory protein, TetR family; alpha/beta hydrolase complement(6474668..6475621) Runella slithyformis DSM 19594 10874131 YP_004658996.1 CDS Runsl_5574 NC_015703.1 6475602 6476174 R PFAM: Bacterial regulatory proteins, tetR family; COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: sli:Slin_5037 amidohydrolase; PFAM: Amidohydrolase 1; SPTR: Amidohydrolase; TetR family transcriptional regulator complement(6475602..6476174) Runella slithyformis DSM 19594 10874132 YP_004658997.1 CDS Runsl_5575 NC_015703.1 6476206 6477651 D PFAM: Amidohydrolase; COGs: COG0372 Citrate synthase; InterPro IPR010953:IPR002020; KEGG: sli:Slin_5036 citrate synthase I; PFAM: Citrate synthase-like; PRIAM: Citrate (Si)-synthase; SPTR: Citrate synthase; TIGRFAM: Citrate synthase, type II; amidohydrolase 6476206..6477651 Runella slithyformis DSM 19594 10874133 YP_004658998.1 CDS Runsl_5576 NC_015703.1 6477843 6479129 D PFAM: Citrate synthase; TIGRFAM: citrate synthase I (hexameric type); InterPro IPR005181:IPR003961; KEGG: dfe:Dfer_3958 fibronectin type III domain protein; PFAM: Protein of unknown function DUF303, acetylesterase ; Fibronectin, type III; SPTR: Fibronectin type III domain protein; citrate synthase I 6477843..6479129 Runella slithyformis DSM 19594 10874134 YP_004658999.1 CDS Runsl_5577 NC_015703.1 6479426 6481414 D PFAM: Domain of unknown function (DUF303); COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR010168:IPR002933:IPR011650; KEGG: sli:Slin_0207 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: N-acetyldiaminopimelate deacetylase; SPTR: Amidohydrolase; TIGRFAM: Peptidase M20D, amidohydrolase; hypothetical protein 6479426..6481414 Runella slithyformis DSM 19594 10874135 YP_004659000.1 CDS Runsl_5578 NC_015703.1 6481649 6482992 R PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase; COGs: COG0131 Imidazoleglycerol-phosphate dehydratase; HAMAP: Imidazoleglycerol-phosphate dehydratase; InterPro IPR000807:IPR005954:IPR006543; KEGG: dfe:Dfer_2927 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; PFAM: Imidazoleglycerol-phosphate dehydratase; PRIAM: Histidinol-phosphatase; SPTR: Histidinol-phosphatase; TIGRFAM: Histidinol-phosphatase; Histidinol-phosphate phosphatase; amidohydrolase complement(6481649..6482992) Runella slithyformis DSM 19594 10874136 YP_004659001.1 CDS Runsl_5579 NC_015703.1 6483086 6484207 D PFAM: Imidazoleglycerol-phosphate dehydratase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; histidinol-phosphate phosphatase domain; histidinol-phosphatase; imidazoleglycerol-phosphate dehydratase 6483086..6484207 Runella slithyformis DSM 19594 10874137 YP_004659002.1 CDS Runsl_5580 NC_015703.1 6484306 6484425 D KEGG: plt:Plut_0531 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6484306..6484425 Runella slithyformis DSM 19594 10874138 YP_004659003.1 CDS Runsl_5581 NC_015703.1 6484550 6484936 D PFAM: Protein of unknown function (DUF3127); COGs: COG1626 Neutral trehalase; InterPro IPR001661; KEGG: cja:CJA_0284 trehalase, , tre37A; PFAM: Glycoside hydrolase, family 37; PRIAM: Alpha,alpha-trehalase; SPTR: Trehalase, , tre37A; hypothetical protein 6484550..6484936 Runella slithyformis DSM 19594 10874139 YP_004659004.1 CDS Runsl_5582 NC_015703.1 6485029 6486558 R PFAM: Trehalase; COGs: COG0738 Fucose permease; InterPro IPR011701; KEGG: psm:PSM_B0242 hypothetical protein; PFAM: Major facilitator superfamily MFS-1; SPTR: uncharacterized protein; alpha,alpha-trehalase complement(6485029..6486558) Runella slithyformis DSM 19594 10874140 YP_004659005.1 CDS Runsl_5583 NC_015703.1 6486597 6487853 R PFAM: Major Facilitator Superfamily; major facilitator superfamily protein complement(6486597..6487853) Runella slithyformis DSM 19594 10874141 YP_004659006.1 CDS Runsl_5584 NC_015703.1 6487897 6488043 R COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: lby:Lbys_2314 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; hypothetical protein complement(6487897..6488043) Runella slithyformis DSM 19594 10874142 YP_004659007.1 CDS Runsl_5585 NC_015703.1 6488104 6488955 D PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG0516 IMP dehydrogenase/GMP reductase; InterPro IPR005990:IPR000644:IPR001093; KEGG: sli:Slin_1193 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core; PRIAM: IMP dehydrogenase; SMART: Cystathionine beta-synthase, core; SPTR: Inosine-5'-monophosphate dehydrogenase; TIGRFAM: IMP dehydrogenase; AraC family transcriptional regulator 6488104..6488955 Runella slithyformis DSM 19594 10874143 YP_004659008.1 CDS Runsl_5586 NC_015703.1 6489050 6490522 R PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase; COGs: COG0162 Tyrosyl-tRNA synthetase; HAMAP: Tyrosyl-tRNA synthetase; InterPro IPR002307:IPR002305; KEGG: sli:Slin_1102 tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; PRIAM: Tyrosine--tRNA ligase; SPTR: Tyrosyl-tRNA synthetase; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; manually curated; inosine-5'-monophosphate dehydrogenase complement(6489050..6490522) Runella slithyformis DSM 19594 10874144 YP_004659009.1 CDS Runsl_5587 NC_015703.1 6490734 6492035 D PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase; COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR000394:IPR007046:IPR007634; KEGG: sli:Slin_0631 RNA polymerase, sigma 54 subunit, RpoN; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54; SPTR: RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma factor 54; tyrosyl-tRNA synthetase 6490734..6492035 Runella slithyformis DSM 19594 10874145 YP_004659010.1 CDS Runsl_5588 NC_015703.1 6492260 6493717 D PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor; KEGG: sli:Slin_0630 hypothetical protein; SPTR: uncharacterized protein; RNA polymerase sigma 54 subunit RpoN 6492260..6493717 Runella slithyformis DSM 19594 10874146 YP_004659011.1 CDS Runsl_5589 NC_015703.1 6493820 6494458 D COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: sli:Slin_0629 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR: Enoyl-CoA hydratase/isomerase; hypothetical protein 6493820..6494458 Runella slithyformis DSM 19594 10874147 YP_004659012.1 CDS Runsl_5590 NC_015703.1 6494518 6495300 D PFAM: Enoyl-CoA hydratase/isomerase; InterPro IPR007138; KEGG: sli:Slin_4551 antibiotic biosynthesis monooxygenase; PFAM: Antibiotic biosynthesis monooxygenase; SPTR: Antibiotic biosynthesis monooxygenase; enoyl-CoA hydratase 6494518..6495300 Runella slithyformis DSM 19594 10874148 YP_004659013.1 CDS Runsl_5591 NC_015703.1 6495385 6495678 D PFAM: Antibiotic biosynthesis monooxygenase; COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: sli:Slin_0539 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein; antibiotic biosynthesis monooxygenase 6495385..6495678 Runella slithyformis DSM 19594 10874149 YP_004659014.1 CDS Runsl_5592 NC_015703.1 6495682 6496200 R PFAM: Thioesterase superfamily; KEGG: dfe:Dfer_3667 hypothetical protein; SPTR: uncharacterized protein; thioesterase complement(6495682..6496200) Runella slithyformis DSM 19594 10874150 YP_004659015.1 CDS Runsl_5593 NC_015703.1 6496407 6496706 D COGs: COG0249 Mismatch repair ATPase (MutS family); InterPro IPR000432; KEGG: sli:Slin_5542 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; SPTR: DNA mismatch repair protein MutS domain protein; hypothetical protein 6496407..6496706 Runella slithyformis DSM 19594 10874151 YP_004659016.1 CDS Runsl_5594 NC_015703.1 6496772 6498559 D PFAM: MutS domain V; MutS domain III; COGs: COG0597 Lipoprotein signal peptidase; HAMAP: Peptidase A8, signal peptidase II; InterPro IPR001872; KEGG: dfe:Dfer_1207 lipoprotein signal peptidase; PFAM: Peptidase A8, signal peptidase II; SPTR: Lipoprotein signal peptidase 1; TIGRFAM: Peptidase A8, signal peptidase II; DNA mismatch repair protein MutS domain-containing protein 6496772..6498559 Runella slithyformis DSM 19594 10874152 YP_004659017.1 CDS Runsl_5595 NC_015703.1 6498633 6499151 D PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase; COGs: COG0326 Molecular chaperone HSP90 family; InterPro IPR003594:IPR020576; KEGG: dfe:Dfer_5199 heat shock protein 90; PFAM: Heat shock protein Hsp90, C-terminal; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: ATP-binding region ATPase domain protein; lipoprotein signal peptidase 6498633..6499151 Runella slithyformis DSM 19594 10874153 YP_004659018.1 CDS Runsl_5596 NC_015703.1 6499335 6501197 D PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Hsp90 protein; Heat shock protein Hsp90 6499335..6501197 Runella slithyformis DSM 19594 10874154 YP_004659019.1 CDS Runsl_5597 NC_015703.1 6501245 6501733 R InterPro IPR003961:IPR001590; KEGG: fba:FIC_00814 hypothetical protein; PFAM: Peptidase M12B, ADAM/reprolysin; Fibronectin, type III; SMART: Fibronectin, type III; SPTR: uncharacterized protein; hypothetical protein complement(6501245..6501733) Runella slithyformis DSM 19594 10874155 YP_004659020.1 CDS Runsl_5598 NC_015703.1 6501841 6505833 D PFAM: Reprolysin (M12B) family zinc metalloprotease; Fibronectin type III domain; InterPro IPR000182; KEGG: fbc:FB2170_13021 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: uncharacterized protein; peptidase M12B ADAM/reprolysin 6501841..6505833 Runella slithyformis DSM 19594 10874156 YP_004659021.1 CDS Runsl_5599 NC_015703.1 6505881 6506333 R PFAM: Acetyltransferase (GNAT) family; COGs: COG1018 Flavodoxin reductase (ferredoxin-NADPH reductase) family 1; InterPro IPR008333:IPR001433:IPR001041; KEGG: sli:Slin_5188 oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: Ferredoxin; Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region; PRIAM: Nitric oxide dioxygenase; SPTR: Oxidoreductase FAD/NAD(P)-binding domain protein; N-acetyltransferase GCN5 complement(6505881..6506333) Runella slithyformis DSM 19594 10874157 YP_004659022.1 CDS Runsl_5600 NC_015703.1 6506477 6507541 R PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; COGs: COG0316 conserved hypothetical protein; InterPro IPR016092:IPR000361; KEGG: dfe:Dfer_3150 iron-sulfur cluster assembly accessory protein; PFAM: FeS cluster biogenesis; SPTR: Iron-sulfur cluster assembly accessory protein; TIGRFAM: FeS cluster insertion; nitric oxide dioxygenase complement(6506477..6507541) Runella slithyformis DSM 19594 10874158 YP_004659023.1 CDS Runsl_5601 NC_015703.1 6507721 6508047 D PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein; COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094:IPR007173; KEGG: sli:Slin_6373 FAD linked oxidase; PFAM: FAD linked oxidase, N-terminal; D-arabinono-1,4-lactone oxidase; PRIAM: Alditol oxidase; SPTR: FAD linked oxidase domain protein; iron-sulfur cluster assembly accessory protein 6507721..6508047 Runella slithyformis DSM 19594 10874159 YP_004659024.1 CDS Runsl_5602 NC_015703.1 6508195 6509538 R PFAM: D-arabinono-1,4-lactone oxidase; FAD binding domain; InterPro IPR010496; KEGG: dfe:Dfer_0295 protein of unknown function DUF1080; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; alditol oxidase complement(6508195..6509538) Runella slithyformis DSM 19594 10874160 YP_004659025.1 CDS Runsl_5603 NC_015703.1 6509558 6510199 R PFAM: Domain of Unknown Function (DUF1080); hypothetical protein complement(6509558..6510199) Runella slithyformis DSM 19594 10874161 YP_004659026.1 CDS Runsl_5604 NC_015703.1 6510365 6510622 D COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: sli:Slin_0241 cobyrinic acid ac-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Cobyrinic acid ac-diamide synthase; hypothetical protein 6510365..6510622 Runella slithyformis DSM 19594 10874162 YP_004659027.1 CDS Runsl_5605 NC_015703.1 6510622 6511446 D PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; COGs: COG1475 transcriptional regulator protein; InterPro IPR004437:IPR003115; KEGG: sli:Slin_0242 ParB-like partition protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; SPTR: ParB-like partition protein; TIGRFAM: ParB-like partition protein; Cobyrinic acid ac-diamide synthase 6510622..6511446 Runella slithyformis DSM 19594 10874163 YP_004659028.1 CDS Runsl_5606 NC_015703.1 6511548 6512468 D PFAM: ParB-like nuclease domain; KorB domain; TIGRFAM: ParB-like partition proteins; KEGG: sli:Slin_0243 hypothetical protein; SPTR: uncharacterized protein; parB-like partition protein 6511548..6512468 Runella slithyformis DSM 19594 10874164 YP_004659029.1 CDS Runsl_5607 NC_015703.1 6512522 6513154 D COGs: COG0289 Dihydrodipicolinate reductase; InterPro IPR011770:IPR000846; KEGG: sli:Slin_0244 dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase; PRIAM: Dihydrodipicolinate reductase; SPTR: Dihydrodipicolinate reductase; TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; hypothetical protein 6512522..6513154 Runella slithyformis DSM 19594 10874165 YP_004659030.1 CDS Runsl_5608 NC_015703.1 6513213 6513932 D PFAM: Dihydrodipicolinate reductase, N-terminus; Dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase; COGs: COG0681 Signal peptidase I; InterPro IPR000223:IPR019759; KEGG: dfe:Dfer_0210 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: Signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; dihydrodipicolinate reductase 6513213..6513932 Runella slithyformis DSM 19594 10874166 YP_004659031.1 CDS Runsl_5609 NC_015703.1 6513973 6515112 D PFAM: Peptidase S26; Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type; KEGG: sli:Slin_1574 glycosyl hydrolase, BNR repeat-containing protein; SPTR: Glycosyl hydrolase, BNR repeat-containing protein; signal peptidase I 6513973..6515112 Runella slithyformis DSM 19594 10874167 YP_004659032.1 CDS Runsl_5610 NC_015703.1 6515314 6518277 R PFAM: BNR/Asp-box repeat; glycoside hydrolase complement(6515314..6518277) Runella slithyformis DSM 19594 10874168 YP_004659033.1 CDS Runsl_5611 NC_015703.1 6518317 6518538 D hypothetical protein 6518317..6518538 Runella slithyformis DSM 19594 10874169 YP_004659034.1 CDS Runsl_5612 NC_015703.1 6518901 6519044 D hypothetical protein 6518901..6519044 Runella slithyformis DSM 19594 10874170 YP_004659035.1 CDS Runsl_5613 NC_015703.1 6519288 6519425 R COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR011659:IPR002469:IPR001375; KEGG: sli:Slin_2851 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein; hypothetical protein complement(6519288..6519425) Runella slithyformis DSM 19594 10874171 YP_004659036.1 CDS Runsl_5614 NC_015703.1 6520000 6522357 R PFAM: Prolyl oligopeptidase; WD40-like Beta Propeller Repeat; Dipeptidyl peptidase IV (DPP IV) N-terminal region; COGs: COG0427 Acetyl-CoA hydrolase; InterPro IPR003702; KEGG: fba:FIC_00447 4-hydroxybutyrate coenzyme A transferase; PFAM: Acetyl-CoA hydrolase/transferase; SPTR: 4-hydroxybutyrate coenzyme A transferase; peptidase S9 prolyl oligopeptidase active site domain-containing protein complement(6520000..6522357) Runella slithyformis DSM 19594 10874172 YP_004659037.1 CDS Runsl_5615 NC_015703.1 6522548 6523861 D PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro IPR012577; KEGG: sli:Slin_4035 NIPSNAP family containing protein; PFAM: NIPSNAP; SPTR: NIPSNAP family containing protein; acetyl-CoA hydrolase/transferase 6522548..6523861 Runella slithyformis DSM 19594 10874173 YP_004659038.1 CDS Runsl_5616 NC_015703.1 6523928 6524719 R PFAM: NIPSNAP; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: dfe:Dfer_1416 transcriptional regulator, HxlR family; PFAM: Helix-turn-helix, HxlR type; SPTR: Transcriptional regulator, HxlR family; NIPSNAP family containing protein complement(6523928..6524719) Runella slithyformis DSM 19594 10874174 YP_004659039.1 CDS Runsl_5617 NC_015703.1 6524867 6525223 R PFAM: HxlR-like helix-turn-helix; COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: shg:Sph21_2760 NADP-dependent oxidoreductase domain; PFAM: Aldo/keto reductase; SPTR: Aldo/keto reductase; HxlR family transcriptional regulator complement(6524867..6525223) Runella slithyformis DSM 19594 10874175 YP_004659040.1 CDS Runsl_5618 NC_015703.1 6525381 6526394 D PFAM: Aldo/keto reductase; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR012938; KEGG: dfe:Dfer_4807 glucose sorbosone dehydrogenase; SPTR: Glucose sorbosone dehydrogenase; aldo/keto reductase 6525381..6526394 Runella slithyformis DSM 19594 10874176 YP_004659041.1 CDS Runsl_5619 NC_015703.1 6526462 6527643 D PFAM: Glucose / Sorbosone dehydrogenase; Membrane bound L-sorbosone dehydrogenase; InterPro IPR003088; KEGG: dfe:Dfer_4806 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I; glucose sorbosone dehydrogenase 6526462..6527643 Runella slithyformis DSM 19594 10874177 YP_004659042.1 CDS Runsl_5620 NC_015703.1 6527741 6528151 D PFAM: Cytochrome c; KEGG: bra:BRADO3484 hypothetical protein; SPTR: uncharacterized protein; cytochrome c class I 6527741..6528151 Runella slithyformis DSM 19594 10874178 YP_004659043.1 CDS Runsl_5621 NC_015703.1 6528260 6529825 D COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; InterPro IPR000192; KEGG: sli:Slin_2434 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; SPTR: Aminotransferase class V; hypothetical protein 6528260..6529825 Runella slithyformis DSM 19594 10874179 YP_004659044.1 CDS Runsl_5622 NC_015703.1 6529875 6530963 R PFAM: Aminotransferase class-V; TIGRFAM: phosphoserine aminotransferase, KEGG: cqu:CpipJ_CPIJ012362 hypothetical protein; SPTR: uncharacterized protein; class V aminotransferase complement(6529875..6530963) Runella slithyformis DSM 19594 10874180 YP_004659045.1 CDS Runsl_5623 NC_015703.1 6531182 6531946 D KEGG: fjo:Fjoh_0717 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6531182..6531946 Runella slithyformis DSM 19594 10874181 YP_004659046.1 CDS Runsl_5624 NC_015703.1 6531907 6532260 R PFAM: S23 ribosomal protein; TIGRFAM: TIGR02436 family protein; COGs: COG0757 3-dehydroquinate dehydratase II; HAMAP: Dehydroquinase, class II; InterPro IPR001874; KEGG: dfe:Dfer_2796 3-dehydroquinate dehydratase, type II; PFAM: Dehydroquinase, class II; PRIAM: 3-dehydroquinate dehydratase; SPTR: 3-dehydroquinate dehydratase, type II; TIGRFAM: Dehydroquinase, class II; hypothetical protein complement(6531907..6532260) Runella slithyformis DSM 19594 10874182 YP_004659047.1 CDS Runsl_5625 NC_015703.1 6532469 6532900 R PFAM: Dehydroquinase class II; TIGRFAM: 3-dehydroquinate dehydratase, type II; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: mtt:Ftrac_1898 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; 3-dehydroquinate dehydratase complement(6532469..6532900) Runella slithyformis DSM 19594 10874183 YP_004659048.1 CDS Runsl_5626 NC_015703.1 6533024 6536131 R PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: phe:Phep_3735 RND family efflux transporter MFP subunit; PFAM: Secretion protein HlyD; SPTR: Cation or acridine efflux membrane fusion protein; TIGRFAM: Secretion protein HlyD; acriflavin resistance protein complement(6533024..6536131) Runella slithyformis DSM 19594 10874184 YP_004659049.1 CDS Runsl_5627 NC_015703.1 6536165 6537292 R PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; RND family efflux transporter MFP subunit complement(6536165..6537292) Runella slithyformis DSM 19594 10874185 YP_004659050.1 CDS Runsl_5628 NC_015703.1 6538306 6538485 D KEGG: shg:Sph21_1774 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6538306..6538485 Runella slithyformis DSM 19594 10874186 YP_004659051.1 CDS Runsl_5629 NC_015703.1 6538563 6539039 R InterPro IPR012944; KEGG: shg:Sph21_1775 RagB/SusD domain-containing protein; PFAM: RagB/SusD; SPTR: Outer membrane protein; hypothetical protein complement(6538563..6539039) Runella slithyformis DSM 19594 10874187 YP_004659052.1 CDS Runsl_5630 NC_015703.1 6539090 6540553 R PFAM: SusD family; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: shg:Sph21_1776 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; RagB/SusD domain-containing protein complement(6539090..6540553) Runella slithyformis DSM 19594 10874188 YP_004659053.1 CDS Runsl_5631 NC_015703.1 6540605 6543727 R PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG3857 ATP-dependent nuclease subunit B; KEGG: dfe:Dfer_2374 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug complement(6540605..6543727) Runella slithyformis DSM 19594 10874189 YP_004659054.1 CDS Runsl_5632 NC_015703.1 6543944 6546997 D COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: phe:Phep_3159 response regulator receiver; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver; hypothetical protein 6543944..6546997 Runella slithyformis DSM 19594 10874190 YP_004659055.1 CDS Runsl_5633 NC_015703.1 6547057 6547794 R PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559:IPR003594; KEGG: shg:Sph21_2097 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; ATP-binding region, ATPase-like; SPTR: Histidine kinase; LytTR family two component transcriptional regulator complement(6547057..6547794) Runella slithyformis DSM 19594 10874191 YP_004659056.1 CDS Runsl_5634 NC_015703.1 6547815 6548909 R PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR008454:IPR012910:IPR000531; KEGG: dfe:Dfer_0346 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Collagen-binding surface protein Cna-like, B region; SPTR: TonB-dependent receptor domain protein; signal transduction histidine kinase complement(6547815..6548909) Runella slithyformis DSM 19594 10874192 YP_004659057.1 CDS Runsl_5635 NC_015703.1 6549114 6551543 D PFAM: TonB-dependent Receptor Plug Domain; InterPro IPR000834; KEGG: sli:Slin_2367 peptidase M14, carboxypeptidase A; PFAM: Peptidase M14, carboxypeptidase A; SPTR: Peptidase M14, carboxypeptidase A; TonB-dependent receptor 6549114..6551543 Runella slithyformis DSM 19594 10874193 YP_004659058.1 CDS Runsl_5636 NC_015703.1 6551796 6553493 D PFAM: Zinc carboxypeptidase; peptidase M14 carboxypeptidase A 6551796..6553493 Runella slithyformis DSM 19594 10874194 YP_004659059.1 CDS Runsl_5637 NC_015703.1 6553423 6553563 R COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR000212; KEGG: dfe:Dfer_1136 UvrD/REP helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: UvrD/REP helicase; hypothetical protein complement(6553423..6553563) Runella slithyformis DSM 19594 10874195 YP_004659060.1 CDS Runsl_5638 NC_015703.1 6553671 6557054 R PFAM: UvrD/REP helicase; Prodigal; manually curated; UvrD/REP helicase complement(6553671..6557054) Runella slithyformis DSM 19594 10874196 YP_004659061.1 CDS Runsl_5640 NC_015703.1 6557821 6559602 D PFAM: ABC transporter transmembrane region; ABC transporter; InterPro IPR000551; KEGG: sli:Slin_2379 MerR family transcriptional regulator; SMART: HTH transcriptional regulator, MerR; SPTR: Transcriptional regulator, MerR family; xenobiotic-transporting ATPase 6557821..6559602 Runella slithyformis DSM 19594 10874198 YP_004659062.1 CDS Runsl_5641 NC_015703.1 6559643 6559969 D regulatory protein MerR 6559643..6559969 Runella slithyformis DSM 19594 10874199 YP_004659063.1 CDS Runsl_5642 NC_015703.1 6559978 6561960 D COGs: COG0207 Thymidylate synthase; HAMAP: Thymidylate synthase; InterPro IPR000398; KEGG: sli:Slin_2832 thymidylate synthase; PFAM: Thymidylate synthase, C-terminal; PRIAM: Thymidylate synthase; SPTR: Thymidylate synthase; TIGRFAM: Thymidylate synthase, C-terminal; hypothetical protein 6559978..6561960 Runella slithyformis DSM 19594 10874200 YP_004659064.1 CDS Runsl_5643 NC_015703.1 6561962 6562756 R PFAM: Thymidylate synthase; TIGRFAM: thymidylate synthase; SPTR: uncharacterized protein; thymidylate synthase complement(6561962..6562756) Runella slithyformis DSM 19594 10874201 YP_004659065.1 CDS Runsl_5644 NC_015703.1 6562848 6563468 R TIGRFAM: TIGR02646 family protein; COGs: COG3950 ATP-binding protein involved in virulence; KEGG: sil:SPOA0124 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein complement(6562848..6563468) Runella slithyformis DSM 19594 10874202 YP_004659066.1 CDS Runsl_5645 NC_015703.1 6563465 6564787 R COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006098:IPR006159:IPR006099:IPR006158; KEGG: sli:Slin_6640 methylmalonyl-CoA mutase, large subunit; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding; PRIAM: Methylmalonyl-CoA mutase; SPTR: Methylmalonyl-CoA mutase, large subunit; TIGRFAM: Methylmalonyl-CoA mutase, alpha chain, catalytic; Methylmalonyl-CoA mutase, C-terminal; hypothetical protein complement(6563465..6564787) Runella slithyformis DSM 19594 10874203 YP_004659067.1 CDS Runsl_5646 NC_015703.1 6564927 6567065 R PFAM: Methylmalonyl-CoA mutase; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase C-terminal domain; COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006099; KEGG: sli:Slin_6641 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; PRIAM: Methylmalonyl-CoA mutase; SPTR: Methylmalonyl-CoA mutase; methylmalonyl-CoA mutase large subunit complement(6564927..6567065) Runella slithyformis DSM 19594 10874204 YP_004659068.1 CDS Runsl_5647 NC_015703.1 6567122 6568498 R PFAM: Methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase, heterodimeric type, beta chain; Signal predicted by SignalP 3.0 HMM; IMG reference gene:2505789240_SP; methylmalonyl-CoA mutase complement(6567122..6568498) Runella slithyformis DSM 19594 10874205 YP_004659069.1 CDS Runsl_5884 NC_015704.1 58 498 R SPTR: Putative uncharacterized protein; hypothetical protein complement(58..498) Runella slithyformis DSM 19594 10868509 YP_004659070.1 CDS Runsl_5885 NC_015704.1 502 771 R COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: sli:Slin_6996 ATPase-like protein involved in chromosome partitioning; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Cobyrinic acid ac-diamide synthase; hypothetical protein complement(502..771) Runella slithyformis DSM 19594 10868419 YP_004659071.1 CDS Runsl_5886 NC_015704.1 786 1382 R PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; Cobyrinic acid ac-diamide synthase complement(786..1382) Runella slithyformis DSM 19594 10868420 YP_004659072.1 CDS Runsl_5887 NC_015704.1 1447 1554 D KEGG: bth:BT_4767 conjugate transposon protein; SPTR: Conjugal transfer protein TraE; hypothetical protein 1447..1554 Runella slithyformis DSM 19594 10868421 YP_004659073.1 CDS Runsl_5888 NC_015704.1 1651 1968 D conjugate transposon protein 1651..1968 Runella slithyformis DSM 19594 10868422 YP_004659074.1 CDS Runsl_5889 NC_015704.1 1973 2362 D hypothetical protein 1973..2362 Runella slithyformis DSM 19594 10868423 YP_004659075.1 CDS Runsl_5890 NC_015704.1 2365 2784 D KEGG: bth:BT_0094 conjugate transposon protein; SPTR: Putative uncharacterized protein; hypothetical protein 2365..2784 Runella slithyformis DSM 19594 10868424 YP_004659076.1 CDS Runsl_5891 NC_015704.1 2781 3113 D COGs: COG3451 Type IV secretory pathway VirB4 protein; KEGG: zpr:ZPR_3458 type IV secretory pathway VirB4 components-like protein; SPTR: Type IV secretory pathway VirB4 components-like protein; TIGRFAM: Bacteroides conjugation system ATPase, TraG family; hypothetical protein 2781..3113 Runella slithyformis DSM 19594 10868425 YP_004659077.1 CDS Runsl_5892 NC_015704.1 3110 5632 D PFAM: Domain of unknown function DUF87; TIGRFAM: Bacteroides conjugation system ATPase, TraG family; KEGG: psn:Pedsa_1679 hypothetical protein; SPTR: Putative uncharacterized protein; conjugation system ATPase, TraG family 3110..5632 Runella slithyformis DSM 19594 10868426 YP_004659078.1 CDS Runsl_5893 NC_015704.1 5644 6645 D KEGG: zpr:ZPR_3462 TraJ family protein conjugative transposon; SPTR: TraJ family protein conjugative transposon; hypothetical protein 5644..6645 Runella slithyformis DSM 19594 10868427 YP_004659079.1 CDS Runsl_5894 NC_015704.1 6647 7912 D PFAM: Homologues of TraJ from Bacteroides conjugative transposon; hypothetical protein 6647..7912 Runella slithyformis DSM 19594 10868428 YP_004659080.1 CDS Runsl_5895 NC_015704.1 7917 8126 D KEGG: bvu:BVU_1567 conjugate transposon protein; SPTR: Putative uncharacterized protein; TIGRFAM: Bacteroides conjugative transposon TraK protein; hypothetical protein 7917..8126 Runella slithyformis DSM 19594 10868429 YP_004659081.1 CDS Runsl_5896 NC_015704.1 8123 8737 D TIGRFAM: Bacteroides conjugative transposon TraK protein; KEGG: pgn:PGN_0595 putative conjugate transposon protein TraA; SPTR: Putative conserved protein found in conjugate transposon TraM; conjugative transposon TraK protein 8123..8737 Runella slithyformis DSM 19594 10868430 YP_004659082.1 CDS Runsl_5897 NC_015704.1 8979 10460 D PFAM: Protein of unknown function (DUF3714); KEGG: bsa:Bacsa_1116 conjugative transposon TraN protein; SPTR: Putative uncharacterized protein; TIGRFAM: Bacteroides conjugative transposon TraN protein; hypothetical protein 8979..10460 Runella slithyformis DSM 19594 10868431 YP_004659083.1 CDS Runsl_5898 NC_015704.1 10475 11419 D TIGRFAM: Bacteroides conjugative transposon TraN protein; SPTR: Putative uncharacterized protein; conjugative transposon TraN protein 10475..11419 Runella slithyformis DSM 19594 10868432 YP_004659084.1 CDS Runsl_5899 NC_015704.1 11441 12004 D PFAM: Conjugative transposon protein TraO; COGs: COG4584 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: sli:Slin_6980 integrase catalytic region; PFAM: Integrase, catalytic core; SPTR: Integrase catalytic region; hypothetical protein 11441..12004 Runella slithyformis DSM 19594 10868433 YP_004659085.1 CDS Runsl_5900 NC_015704.1 12252 13802 D PFAM: Integrase core domain; COGs: COG1484 DNA replication protein; InterPro IPR003593:IPR002611; KEGG: sli:Slin_6979 IstB domain protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; SPTR: IstB domain protein ATP-binding protein; integrase catalytic subunit 12252..13802 Runella slithyformis DSM 19594 10868434 YP_004659086.1 CDS Runsl_5901 NC_015704.1 13833 14573 D PFAM: IstB-like ATP binding protein; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: cly:Celly_2380 UvrD/REP helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: LexA repressor; IstB domain-containing protein ATP-binding protein 13833..14573 Runella slithyformis DSM 19594 10868435 YP_004659087.1 CDS Runsl_5902 NC_015704.1 14664 17132 R PFAM: UvrD/REP helicase; COGs: COG1533 DNA repair photolyase; InterPro IPR006638:IPR007197; KEGG: cly:Celly_2381 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Conserved Archaeal protein; UvrD/REP helicase complement(14664..17132) Runella slithyformis DSM 19594 10868436 YP_004659088.1 CDS Runsl_5903 NC_015704.1 17129 17977 R PFAM: Radical SAM superfamily; COGs: COG3550 conserved hypothetical protein; InterPro IPR012894:IPR012893; KEGG: cpc:Cpar_0148 HipA domain-containing protein; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; SPTR: Putative uncharacterized protein; Radical SAM domain-containing protein complement(17129..17977) Runella slithyformis DSM 19594 10868437 YP_004659089.1 CDS Runsl_5904 NC_015704.1 18037 18975 R PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain; InterPro IPR017508; KEGG: pvi:Cvib_0661 hypothetical protein; SPTR: Toxin-antitoxin system, toxin component, HipA family; TIGRFAM: HipA, N-terminal; HipA domain-containing protein complement(18037..18975) Runella slithyformis DSM 19594 10868438 YP_004659090.1 CDS Runsl_5905 NC_015704.1 18972 19301 R TIGRFAM: HipA N-terminal domain; InterPro IPR017507:IPR001387; KEGG: cpc:Cpar_0146 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; TIGRFAM: Transcriptional regulator, HipB-like; HipA N-terminal domain-containing protein complement(18972..19301) Runella slithyformis DSM 19594 10868439 YP_004659091.1 CDS Runsl_5906 NC_015704.1 19294 19506 R PFAM: Helix-turn-helix; TIGRFAM: transcriptional regulator, y4mF family; transcriptional regulator complement(19294..19506) Runella slithyformis DSM 19594 10868440 YP_004659092.1 CDS Runsl_5907 NC_015704.1 19621 19911 R Prodigal; manually curated; hypothetical protein complement(19621..19911) Runella slithyformis DSM 19594 10868441 YP_004659093.1 CDS Runsl_5909 NC_015704.1 20650 21084 R COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: bsa:Bacsa_3149 conjugate transposon protein; SPTR: Conjugative transposon protein TraA; hypothetical protein complement(20650..21084) Runella slithyformis DSM 19594 10868443 YP_004659094.1 CDS Runsl_5910 NC_015704.1 21241 22065 D PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; hypothetical protein 21241..22065 Runella slithyformis DSM 19594 10868444 YP_004659095.1 CDS Runsl_5911 NC_015704.1 22072 22455 D hypothetical protein 22072..22455 Runella slithyformis DSM 19594 10868445 YP_004659096.1 CDS Runsl_5912 NC_015704.1 22452 22934 D hypothetical protein 22452..22934 Runella slithyformis DSM 19594 10868446 YP_004659097.1 CDS Runsl_5913 NC_015704.1 23055 23609 R KEGG: sli:Slin_6693 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(23055..23609) Runella slithyformis DSM 19594 10868447 YP_004659098.1 CDS Runsl_5914 NC_015704.1 23830 24627 R hypothetical protein complement(23830..24627) Runella slithyformis DSM 19594 10868448 YP_004659099.1 CDS Runsl_5915 NC_015704.1 25240 25722 R KEGG: sli:Slin_6855 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(25240..25722) Runella slithyformis DSM 19594 10868449 YP_004659100.1 CDS Runsl_5916 NC_015704.1 25953 26954 R InterPro IPR000525; KEGG: gka:GKP02 replication initiator protein; PFAM: Initiator Rep protein; SPTR: Replication initiator protein; hypothetical protein complement(25953..26954) Runella slithyformis DSM 19594 10868450 YP_004659101.1 CDS Runsl_5917 NC_015704.1 27816 29006 D PFAM: Initiator Replication protein; COGs: COG2217 Cation transport ATPase; InterPro IPR006403:IPR006416:IPR001757:IPR006121:IPR008250:IPR0058 34; KEGG: sli:Slin_6890 copper-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Copper-translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; initiator RepB protein 27816..29006 Runella slithyformis DSM 19594 10868451 YP_004659102.1 CDS Runsl_5918 NC_015704.1 29100 31316 D PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: zpr:ZPR_4233 heavy metal-associated protein; SPTR: Heavy metal-associated protein; heavy metal translocating P-type ATPase 29100..31316 Runella slithyformis DSM 19594 10868452 YP_004659103.1 CDS Runsl_5919 NC_015704.1 31341 31550 D PFAM: Heavy-metal-associated domain; COGs: COG1451 metal-dependent hydrolase; InterPro IPR002725; KEGG: cyp:PCC8801_2959 hypothetical protein; PFAM: Protein of unknown function DUF45; SPTR: Putative uncharacterized protein; heavy metal-associated protein 31341..31550 Runella slithyformis DSM 19594 10868453 YP_004659104.1 CDS Runsl_5920 NC_015704.1 31572 32246 R PFAM: Protein of unknown function DUF45; COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR004473:IPR014001:IPR007409:IPR006935; KEGG: cyh:Cyan8802_3142 type I site-specific deoxyribonuclease, HsdR family; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; SPTR: Type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; hypothetical protein complement(31572..32246) Runella slithyformis DSM 19594 10868454 YP_004659105.1 CDS Runsl_5921 NC_015704.1 32246 35446 R PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: fra:Francci3_4012 restriction modification system DNA specificity subunit; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Restriction modification system DNA specificity domain; HsdR family type I site-specific deoxyribonuclease complement(32246..35446) Runella slithyformis DSM 19594 10868455 YP_004659106.1 CDS Runsl_5922 NC_015704.1 35455 36726 R PFAM: Type I restriction modification DNA specificity domain; COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: swo:Swol_2258 type I restriction-modification system, M subunit; PFAM: DNA methylase, adenine-specific; SPTR: Type I restriction-modification system, M subunit; restriction modification system DNA specificity domain-containing protein complement(35455..36726) Runella slithyformis DSM 19594 10868456 YP_004659107.1 CDS Runsl_5923 NC_015704.1 36717 39620 R PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM); COGs: COG2217 Cation transport ATPase; InterPro IPR006404:IPR006416:IPR001757:IPR008250:IPR005834; KEGG: dfe:Dfer_1187 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; PRIAM: Zinc-exporting ATPase; SPTR: Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; N-6 DNA methylase complement(36717..39620) Runella slithyformis DSM 19594 10868457 YP_004659108.1 CDS Runsl_5924 NC_015704.1 39905 41893 R PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; KEGG: sli:Slin_6747 hypothetical protein; SPTR: Putative uncharacterized protein; heavy metal translocating P-type ATPase complement(39905..41893) Runella slithyformis DSM 19594 10868458 YP_004659109.1 CDS Runsl_5925 NC_015704.1 41907 42530 R COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: fjo:Fjoh_3345 RND family efflux transporter MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; hypothetical protein complement(41907..42530) Runella slithyformis DSM 19594 10868459 YP_004659110.1 CDS Runsl_5926 NC_015704.1 42574 43821 R TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG3696 Putative silver efflux pump; InterPro IPR004763:IPR001036:IPR003423; KEGG: chu:CHU_1512 cation efflux protein; PFAM: Acriflavin resistance protein; Outer membrane efflux protein; SPTR: Cation efflux protein; TIGRFAM: Heavy metal efflux pump CzcA; RND family efflux transporter MFP subunit complement(42574..43821) Runella slithyformis DSM 19594 10868460 YP_004659111.1 CDS Runsl_5927 NC_015704.1 43834 48174 R PFAM: Outer membrane efflux protein; AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); KEGG: fjo:Fjoh_3348 hypothetical protein; SPTR: Putative uncharacterized protein; CzcA family heavy metal efflux pump complement(43834..48174) Runella slithyformis DSM 19594 10868461 YP_004659112.1 CDS Runsl_5928 NC_015704.1 48293 48706 R COGs: COG2217 Cation transport ATPase; InterPro IPR006403:IPR006416:IPR001757:IPR008250:IPR005834; KEGG: mtt:Ftrac_2065 copper-translocating p-type atpase; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Copper-translocating P-type ATPase; TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; hypothetical protein complement(48293..48706) Runella slithyformis DSM 19594 10868462 YP_004659113.1 CDS Runsl_5929 NC_015704.1 48681 50726 R PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; KEGG: sli:Slin_6865 hypothetical protein; SPTR: Putative uncharacterized protein; copper-translocating P-type ATPase complement(48681..50726) Runella slithyformis DSM 19594 10868463 YP_004659114.1 CDS Runsl_5930 NC_015704.1 50732 51490 R KEGG: cle:Clole_0353 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(50732..51490) Runella slithyformis DSM 19594 10868464 YP_004659115.1 CDS Runsl_5931 NC_015704.1 51501 52166 R KEGG: gfo:GFO_1264 secreted protein; SPTR: Secreted protein; hypothetical protein complement(51501..52166) Runella slithyformis DSM 19594 10868465 YP_004659116.1 CDS Runsl_5932 NC_015704.1 52287 52739 R KEGG: sli:Slin_6867 hypothetical protein; SPTR: Putative uncharacterized protein; secreted protein complement(52287..52739) Runella slithyformis DSM 19594 10868466 YP_004659117.1 CDS Runsl_5933 NC_015704.1 52827 53300 R PFAM: Protein of unknown function (DUF3347); KEGG: fjo:Fjoh_3075 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(52827..53300) Runella slithyformis DSM 19594 10868467 YP_004659118.1 CDS Runsl_5934 NC_015704.1 53350 54600 R KEGG: psn:Pedsa_1579 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated; hypothetical protein complement(53350..54600) Runella slithyformis DSM 19594 10868468 YP_004659119.1 CDS Runsl_5935 NC_015704.1 54600 54809 R COGs: COG2608 Copper chaperone; InterPro IPR003457:IPR006121; KEGG: zpr:ZPR_3374 mercuric transport protein; PFAM: Heavy metal transport/detoxification protein; Mercuric transport protein MerT; SPTR: Mercuric transport protein; hypothetical protein complement(54600..54809) Runella slithyformis DSM 19594 10868469 YP_004659120.1 CDS Runsl_5936 NC_015704.1 54806 55411 R PFAM: Heavy-metal-associated domain; MerT mercuric transport protein; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: aoe:Clos_1084 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; Heavy metal transport/detoxification protein complement(54806..55411) Runella slithyformis DSM 19594 10868470 YP_004659121.1 CDS Runsl_5937 NC_015704.1 55408 56055 R PFAM: Methyltransferase domain; KEGG: sli:Slin_6813 hypothetical protein; SPTR: Putative uncharacterized protein; type 11 methyltransferase complement(55408..56055) Runella slithyformis DSM 19594 10868471 YP_004659122.1 CDS Runsl_5938 NC_015704.1 56070 56942 R PFAM: Protein of unknown function (DUF2911); KEGG: cao:Celal_3908 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated; hypothetical protein complement(56070..56942) Runella slithyformis DSM 19594 10868472 YP_004659123.1 CDS Runsl_5939 NC_015704.1 56939 57385 R KEGG: psn:Pedsa_1599 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(56939..57385) Runella slithyformis DSM 19594 10868473 YP_004659124.1 CDS Runsl_5940 NC_015704.1 57394 57960 R PFAM: Protein of unknown function (DUF3347); KEGG: sli:Slin_6863 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(57394..57960) Runella slithyformis DSM 19594 10868474 YP_004659125.1 CDS Runsl_5941 NC_015704.1 58036 58503 R COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: chu:CHU_1501 copper transport system protein; PFAM: Secretion protein HlyD; SPTR: Possible component of copper transport system; TIGRFAM: Secretion protein HlyD; hypothetical protein complement(58036..58503) Runella slithyformis DSM 19594 10868475 YP_004659126.1 CDS Runsl_5942 NC_015704.1 58666 59874 R TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sli:Slin_6878 RND family efflux transporter MFP subunit; SPTR: RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit complement(58666..59874) Runella slithyformis DSM 19594 10868476 YP_004659127.1 CDS Runsl_5943 NC_015704.1 59871 61478 R COGs: COG1538 Outer membrane protein; KEGG: chu:CHU_1503 hypothetical protein; SPTR: Putative uncharacterized protein; RND family efflux transporter MFP subunit complement(59871..61478) Runella slithyformis DSM 19594 10868477 YP_004659128.1 CDS Runsl_5944 NC_015704.1 61453 62730 R COGs: COG3696 Putative silver efflux pump; InterPro IPR001036; KEGG: chu:CHU_1504 heavy metal efflux pump protein; PFAM: Acriflavin resistance protein; SPTR: Heavy metal efflux pump protein; hypothetical protein complement(61453..62730) Runella slithyformis DSM 19594 10868478 YP_004659129.1 CDS Runsl_5945 NC_015704.1 62717 64651 R PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); COGs: COG3696 Putative silver efflux pump; InterPro IPR001036; KEGG: chu:CHU_1504 heavy metal efflux pump protein; PFAM: Acriflavin resistance protein; SPTR: Heavy metal efflux pump protein; acriflavin resistance protein complement(62717..64651) Runella slithyformis DSM 19594 10868479 YP_004659130.1 CDS Runsl_5946 NC_015704.1 64648 65934 R PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); KEGG: sli:Slin_1514 hypothetical protein; SPTR: Putative uncharacterized protein; acriflavin resistance protein complement(64648..65934) Runella slithyformis DSM 19594 10868480 YP_004659131.1 CDS Runsl_5947 NC_015704.1 65966 67015 R COGs: COG2132 Putative multicopper oxidase; InterPro IPR011707:IPR001117:IPR011706; KEGG: sli:Slin_6866 bilirubin oxidase; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 1; Multicopper oxidase, type 2; PRIAM: Bilirubin oxidase; SPTR: Bilirubin oxidase; hypothetical protein complement(65966..67015) Runella slithyformis DSM 19594 10868481 YP_004659132.1 CDS Runsl_5948 NC_015704.1 67064 68554 R PFAM: Multicopper oxidase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: fjo:Fjoh_0190 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: AraC family transcriptional regulator; Bilirubin oxidase complement(67064..68554) Runella slithyformis DSM 19594 10868482 YP_004659133.1 CDS Runsl_5949 NC_015704.1 68573 69136 R PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: dfe:Dfer_3108 hypothetical protein; SPTR: Putative uncharacterized protein; AraC family transcriptional regulator complement(68573..69136) Runella slithyformis DSM 19594 10868483 YP_004659134.1 CDS Runsl_5950 NC_015704.1 69257 69697 R KEGG: sli:Slin_6854 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(69257..69697) Runella slithyformis DSM 19594 10868484 YP_004659135.1 CDS Runsl_5951 NC_015704.1 69901 70299 D COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107:IPR002104; KEGG: sli:Slin_6972 integrase family protein; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Integrase family protein; hypothetical protein 69901..70299 Runella slithyformis DSM 19594 10868485 YP_004659136.1 CDS Runsl_5952 NC_015704.1 70265 71248 D PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; integrase family protein 70265..71248 Runella slithyformis DSM 19594 10868486 YP_004659137.1 CDS Runsl_5953 NC_015704.1 71261 71581 R COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; hypothetical protein complement(71261..71581) Runella slithyformis DSM 19594 10868487 YP_004659138.1 CDS Runsl_5954 NC_015704.1 71706 72716 R PFAM: Rhodopirellula transposase; 'Paired box' domain; KEGG: rrs:RoseRS_0630 hypothetical protein; SPTR: Putative uncharacterized protein; paired box domain-containing protein complement(71706..72716) Runella slithyformis DSM 19594 10868488 YP_004659139.1 CDS Runsl_5955 NC_015704.1 72802 73275 D KEGG: rrs:RoseRS_0631 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 72802..73275 Runella slithyformis DSM 19594 10868489 YP_004659140.1 CDS Runsl_5956 NC_015704.1 73275 73946 D hypothetical protein 73275..73946 Runella slithyformis DSM 19594 10868490 YP_004659141.1 CDS Runsl_5957 NC_015704.1 73970 74257 R KEGG: ccu:Ccur_13910 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(73970..74257) Runella slithyformis DSM 19594 10868491 YP_004659142.1 CDS Runsl_5958 NC_015704.1 74432 75289 R KEGG: sli:Slin_4859 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(74432..75289) Runella slithyformis DSM 19594 10868492 YP_004659143.1 CDS Runsl_5959 NC_015704.1 75294 75731 R KEGG: ccu:Ccur_13910 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(75294..75731) Runella slithyformis DSM 19594 10868493 YP_004659144.1 CDS Runsl_5960 NC_015704.1 75721 76764 R COGs: COG3621 Patatin; InterPro IPR002641; KEGG: zpr:ZPR_3998 patatin; PFAM: Patatin; SPTR: Patatin; hypothetical protein complement(75721..76764) Runella slithyformis DSM 19594 10868494 YP_004659145.1 CDS Runsl_5961 NC_015704.1 76777 77865 R PFAM: Patatin-like phospholipase; COGs: COG2856 Zn peptidase; InterPro IPR001387:IPR010359; KEGG: psn:Pedsa_1879 protein of unknown function DUF955; PFAM: Protein of unknown function DUF955; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Putative uncharacterized protein; Patatin complement(76777..77865) Runella slithyformis DSM 19594 10868495 YP_004659146.1 CDS Runsl_5962 NC_015704.1 77907 79043 D PFAM: Helix-turn-helix; Domain of unknown function (DUF955); KEGG: kol:Kole_0648 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 77907..79043 Runella slithyformis DSM 19594 10868496 YP_004659147.1 CDS Runsl_5963 NC_015704.1 79043 79552 D COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160; KEGG: rbo:A1I_03790 response regulator PleD; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: Response regulator PleD; TIGRFAM: Diguanylate cyclase, predicted; hypothetical protein 79043..79552 Runella slithyformis DSM 19594 10868497 YP_004659148.1 CDS Runsl_5964 NC_015704.1 79568 80344 D PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain; COGs: COG4646 DNA methylase; InterPro IPR014001:IPR001650:IPR003356; KEGG: pgn:PGN_0086 putative DNA methylase; PFAM: DNA methylase, adenine-specific; DNA/RNA helicase, C-terminal; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal; SPTR: Putative DNA methylase; diguanylate cyclase 79568..80344 Runella slithyformis DSM 19594 10868498 YP_004659149.1 CDS Runsl_5965 NC_015704.1 80346 85334 R PFAM: N-6 DNA Methylase; Helicase conserved C-terminal domain; KEGG: bfr:BF0143 hypothetical protein; SPTR: Putative uncharacterized protein; N-6 DNA methylase complement(80346..85334) Runella slithyformis DSM 19594 10868499 YP_004659150.1 CDS Runsl_5966 NC_015704.1 85324 85824 R PFAM: Domain of unknown function (DUF1896); KEGG: sli:Slin_6836 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(85324..85824) Runella slithyformis DSM 19594 10868500 YP_004659151.1 CDS Runsl_5967 NC_015704.1 85769 88090 R hypothetical protein complement(85769..88090) Runella slithyformis DSM 19594 10868501 YP_004659152.1 CDS Runsl_5968 NC_015704.1 88111 88392 R COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: wvi:Weevi_1329 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23; hypothetical protein complement(88111..88392) Runella slithyformis DSM 19594 10868502 YP_004659153.1 CDS Runsl_5969 NC_015704.1 88494 89111 D PFAM: Peptidase family M23; InterPro IPR001387; KEGG: cao:Celal_0834 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Predicted protein; peptidase M23 88494..89111 Runella slithyformis DSM 19594 10868503 YP_004659154.1 CDS Runsl_5970 NC_015704.1 89206 89409 D PFAM: Helix-turn-helix; InterPro IPR017508; KEGG: bfs:BF0724 HipA-like protein; SPTR: Putative uncharacterized protein; TIGRFAM: HipA, N-terminal; helix-turn-helix domain-containing protein 89206..89409 Runella slithyformis DSM 19594 10868504 YP_004659155.1 CDS Runsl_5971 NC_015704.1 89406 89747 D TIGRFAM: HipA N-terminal domain; COGs: COG3550 conserved hypothetical protein; InterPro IPR012894:IPR012893; KEGG: zpr:ZPR_4409 HipA-like protein; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; SPTR: HipA-like protein; HipA N-terminal domain-containing protein 89406..89747 Runella slithyformis DSM 19594 10868505 YP_004659156.1 CDS Runsl_5972 NC_015704.1 89744 90757 D PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain; HipA domain-containing protein 89744..90757 Runella slithyformis DSM 19594 10868506 YP_004659157.1 CDS Runsl_5973 NC_015704.1 90763 91287 R KEGG: shg:Sph21_3584 hypothetical protein; SPTR: TraG family protein; hypothetical protein complement(90763..91287) Runella slithyformis DSM 19594 10868507 YP_004659158.1 CDS Runsl_5974 NC_015704.1 91331 93478 R PFAM: TraG/TraD family; Signal predicted by SignalP 3.0 HMM; IMG reference gene:2505789148_SP; hypothetical protein complement(91331..93478) Runella slithyformis DSM 19594 10868508 YP_004659159.1 CDS Runsl_5768 NC_015705.1 296 1468 R InterPro IPR014942; KEGG: sbu:SpiBuddy_2626 hypothetical protein; PFAM: Protein of unknown function DUF1814; SPTR: Putative uncharacterized protein; AAA ATPase complement(296..1468) Runella slithyformis DSM 19594 10868417 YP_004659160.1 CDS Runsl_5769 NC_015705.1 2100 2879 R PFAM: Domain of unknown function (DUF1814); KEGG: sbu:SpiBuddy_2625 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2100..2879) Runella slithyformis DSM 19594 10868372 YP_004659161.1 CDS Runsl_5770 NC_015705.1 2876 3490 R hypothetical protein complement(2876..3490) Runella slithyformis DSM 19594 10868373 YP_004659162.1 CDS Runsl_5771 NC_015705.1 3572 3844 R Prodigal; manually curated; hypothetical protein complement(3572..3844) Runella slithyformis DSM 19594 10868374 YP_004659163.1 CDS Runsl_5773 NC_015705.1 5120 5719 D PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; Cobyrinic acid ac-diamide synthase 5120..5719 Runella slithyformis DSM 19594 10868376 YP_004659164.1 CDS Runsl_5774 NC_015705.1 5774 6055 D COGs: COG5527 Protein involved in initiation of plasmid replication; InterPro IPR000525; KEGG: bmq:BMQ_pBM60001 replication initiator protein; PFAM: Initiator Rep protein; SPTR: Replication initiator protein; hypothetical protein 5774..6055 Runella slithyformis DSM 19594 10868377 YP_004659165.1 CDS Runsl_5775 NC_015705.1 6701 8065 D PFAM: Initiator Replication protein; Prodigal; manually curated; initiator RepB protein 6701..8065 Runella slithyformis DSM 19594 10868378 YP_004659166.1 CDS Runsl_5777 NC_015705.1 8648 9046 R InterPro IPR007272; KEGG: sli:Slin_6935 protein of unknown function DUF395 YeeE/YedE; PFAM: Protein of unknown function DUF395, YeeE/YedE; SPTR: Putative uncharacterized protein; hypothetical protein complement(8648..9046) Runella slithyformis DSM 19594 10868380 YP_004659167.1 CDS Runsl_5778 NC_015705.1 9109 9612 R PFAM: YeeE/YedE family (DUF395); InterPro IPR007272; KEGG: sli:Slin_6934 protein of unknown function DUF395 YeeE/YedE; PFAM: Protein of unknown function DUF395, YeeE/YedE; SPTR: Putative uncharacterized protein; hypothetical protein complement(9109..9612) Runella slithyformis DSM 19594 10868381 YP_004659168.1 CDS Runsl_5779 NC_015705.1 9643 10218 R PFAM: YeeE/YedE family (DUF395); KEGG: mtt:Ftrac_3650 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(9643..10218) Runella slithyformis DSM 19594 10868382 YP_004659169.1 CDS Runsl_5780 NC_015705.1 10230 11642 R PFAM: outer membrane porin, OprD family; COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR004843:IPR008334; KEGG: zpr:ZPR_1818 5'-nucleotidase; PFAM: Metallophosphoesterase; 5'-Nucleotidase, C-terminal; PRIAM: 5'-nucleotidase; SPTR: 5'-nucleotidase; hypothetical protein complement(10230..11642) Runella slithyformis DSM 19594 10868383 YP_004659170.1 CDS Runsl_5781 NC_015705.1 11730 13406 R PFAM: 5'-nucleotidase, C-terminal domain; Calcineurin-like phosphoesterase; COGs: COG1416 conserved hypothetical protein; InterPro IPR014865; KEGG: chu:CHU_1583 hypothetical protein; SPTR: Putative uncharacterized protein; 5'-nucleotidase complement(11730..13406) Runella slithyformis DSM 19594 10868384 YP_004659171.1 CDS Runsl_5782 NC_015705.1 13418 13834 R PFAM: DsrE/DsrF-like family; COGs: COG3258 Cytochrome c; InterPro IPR003088; KEGG: sli:Slin_6947 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I; hypothetical protein complement(13418..13834) Runella slithyformis DSM 19594 10868385 YP_004659172.1 CDS Runsl_5783 NC_015705.1 13831 14913 R PFAM: Cytochrome c; cytochrome c class I complement(13831..14913) Runella slithyformis DSM 19594 10868386 YP_004659173.1 CDS Runsl_5784 NC_015705.1 14997 15122 R KEGG: cao:Celal_2348 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(14997..15122) Runella slithyformis DSM 19594 10868387 YP_004659174.1 CDS Runsl_5785 NC_015705.1 15086 15331 R InterPro IPR013217; KEGG: shg:Sph21_0869 methyltransferase type 12; PFAM: Methyltransferase type 12; SPTR: Putative uncharacterized protein; hypothetical protein complement(15086..15331) Runella slithyformis DSM 19594 10868388 YP_004659175.1 CDS Runsl_5786 NC_015705.1 15343 15960 R PFAM: Methyltransferase domain; KEGG: gfo:GFO_1268 hypothetical protein; SPTR: Putative uncharacterized protein; type 12 methyltransferase complement(15343..15960) Runella slithyformis DSM 19594 10868389 YP_004659176.1 CDS Runsl_5787 NC_015705.1 16020 16616 R PFAM: Tellurite resistance protein TehB; COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR005746:IPR013766; KEGG: shg:Sph21_3201 thioredoxin; PFAM: Thioredoxin domain; SPTR: Thioredoxin; TIGRFAM: Thioredoxin; hypothetical protein complement(16020..16616) Runella slithyformis DSM 19594 10868390 YP_004659177.1 CDS Runsl_5788 NC_015705.1 16613 16933 R PFAM: Thioredoxin; TIGRFAM: thioredoxin; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: sli:Slin_6177 beta-lactamase; SMART: Rhodanese-like; SPTR: Beta-lactamase domain protein; thioredoxin complement(16613..16933) Runella slithyformis DSM 19594 10868391 YP_004659178.1 CDS Runsl_5789 NC_015705.1 17094 18515 R PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain; KEGG: zpr:ZPR_3646 hypothetical protein; SPTR: Putative uncharacterized protein; Rhodanese-like protein complement(17094..18515) Runella slithyformis DSM 19594 10868392 YP_004659179.1 CDS Runsl_5790 NC_015705.1 18705 18959 R PFAM: Domain of unknown function DUF; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: shg:Sph21_3587 beta-lactamase domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Metallo-beta-lactamase family protein; hypothetical protein complement(18705..18959) Runella slithyformis DSM 19594 10868393 YP_004659180.1 CDS Runsl_5791 NC_015705.1 19219 20634 R PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain; COGs: COG0730 permease; InterPro IPR002781; KEGG: cat:CA2559_12623 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: Membrane protein; Rhodanese-like protein complement(19219..20634) Runella slithyformis DSM 19594 10868394 YP_004659181.1 CDS Runsl_5792 NC_015705.1 20736 21542 R PFAM: Sulfite exporter TauE/SafE; Prodigal; manually curated; hypothetical protein complement(20736..21542) Runella slithyformis DSM 19594 10868395 YP_004659182.1 CDS Runsl_5795 NC_015705.1 22784 23182 R KEGG: shg:Sph21_4811 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(22784..23182) Runella slithyformis DSM 19594 10868398 YP_004659183.1 CDS Runsl_5796 NC_015705.1 23413 24210 R InterPro IPR012910; KEGG: cpi:Cpin_6408 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; SPTR: Outer membrane protein; hypothetical protein complement(23413..24210) Runella slithyformis DSM 19594 10868399 YP_004659184.1 CDS Runsl_5797 NC_015705.1 24322 26631 R PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: ppn:Palpr_2726 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; TonB-dependent receptor plug complement(24322..26631) Runella slithyformis DSM 19594 10868400 YP_004659185.1 CDS Runsl_5798 NC_015705.1 26859 29990 R PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sli:Slin_2818 efflux transporter RND family, MFP subunit; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; acriflavin resistance protein complement(26859..29990) Runella slithyformis DSM 19594 10868401 YP_004659186.1 CDS Runsl_5799 NC_015705.1 30013 31077 R TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_2819 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; RND family efflux transporter MFP subunit complement(30013..31077) Runella slithyformis DSM 19594 10868402 YP_004659187.1 CDS Runsl_5800 NC_015705.1 31088 32455 R PFAM: Outer membrane efflux protein; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: fjo:Fjoh_0180 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; outer membrane efflux protein complement(31088..32455) Runella slithyformis DSM 19594 10868403 YP_004659188.1 CDS Runsl_5801 NC_015705.1 32549 33481 R PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: lby:Lbys_3124 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; AraC family transcriptional regulator complement(32549..33481) Runella slithyformis DSM 19594 10868404 YP_004659189.1 CDS Runsl_5802 NC_015705.1 33492 34256 R PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: lby:Lbys_3125 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; LytTR family two component transcriptional regulator complement(33492..34256) Runella slithyformis DSM 19594 10868405 YP_004659190.1 CDS Runsl_5803 NC_015705.1 34253 35308 R PFAM: Histidine kinase; putative signal transduction histidine kinase complement(34253..35308) Runella slithyformis DSM 19594 10868406 YP_004659191.1 CDS Runsl_5804 NC_015705.1 35317 35445 D hypothetical protein 35317..35445 Runella slithyformis DSM 19594 10868407 YP_004659192.1 CDS Runsl_5805 NC_015705.1 35438 35536 D manually curated; hypothetical protein 35438..35536 Runella slithyformis DSM 19594 10868408 YP_004659193.1 CDS Runsl_5807 NC_015705.1 35734 37254 R PFAM: Beta-lactamase; Domain of unknown function (DUF3471); beta-lactamase complement(35734..37254) Runella slithyformis DSM 19594 10868410 YP_004659194.1 CDS Runsl_5808 NC_015705.1 37399 37560 R hypothetical protein complement(37399..37560) Runella slithyformis DSM 19594 10868411 YP_004659195.1 CDS Runsl_5809 NC_015705.1 37600 37881 D InterPro IPR003961:IPR001701; KEGG: dfe:Dfer_2105 glycoside hydrolase family 9; PFAM: Glycoside hydrolase, family 9; Fibronectin, type III; SMART: Fibronectin, type III; SPTR: Glycoside hydrolase, family 9; hypothetical protein 37600..37881 Runella slithyformis DSM 19594 10868412 YP_004659196.1 CDS Runsl_5810 NC_015705.1 38040 41777 R PFAM: Glycosyl hydrolase family 9; Fibronectin type III domain; N-terminal ig-like domain of cellulase; KEGG: lby:Lbys_3059 lipoprotein; SPTR: Putative lipoprotein; glycoside hydrolase family 9 complement(38040..41777) Runella slithyformis DSM 19594 10868413 YP_004659197.1 CDS Runsl_5811 NC_015705.1 41870 43144 R hypothetical protein complement(41870..43144) Runella slithyformis DSM 19594 10868414 YP_004659198.1 CDS Runsl_5812 NC_015705.1 43342 43635 R COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119; KEGG: pap:PSPA7_0108 hypothetical protein; PFAM: Resolvase, N-terminal; SPTR: TnpR; hypothetical protein complement(43342..43635) Runella slithyformis DSM 19594 10868415 YP_004659199.1 CDS Runsl_5813 NC_015705.1 43853 44455 D PFAM: Resolvase, N terminal domain; Signal predicted by SignalP 3.0 HMM; IMG reference gene:2505789040_SP; Resolvase domain-containing protein 43853..44455 Runella slithyformis DSM 19594 10868416 Runsl_R0001 tRNA Runsl_R0001 NC_015703.1 240203 240277 R tRNA-Pro complement(240203..240277) Runella slithyformis DSM 19594 10868706 Runsl_R0004 tRNA Runsl_R0004 NC_015703.1 243512 243585 R tRNA-Ala complement(243512..243585) Runella slithyformis DSM 19594 10868709 Runsl_R0005 tRNA Runsl_R0005 NC_015703.1 243661 243734 R tRNA-Ile complement(243661..243734) Runella slithyformis DSM 19594 10868710 Runsl_R0007 tRNA Runsl_R0007 NC_015703.1 381188 381257 D tRNA-Ala 381188..381257 Runella slithyformis DSM 19594 10868825 Runsl_R0008 tRNA Runsl_R0008 NC_015703.1 420067 420141 R tRNA-Arg complement(420067..420141) Runella slithyformis DSM 19594 10868876 Runsl_R0009 tRNA Runsl_R0009 NC_015703.1 744244 744327 D tRNA-Leu 744244..744327 Runella slithyformis DSM 19594 10869141 Runsl_R0010 tRNA Runsl_R0010 NC_015703.1 909944 910020 R tRNA-Asn complement(909944..910020) Runella slithyformis DSM 19594 10869287 Runsl_R0012 tRNA Runsl_R0012 NC_015703.1 1219695 1219766 R tRNA-Arg complement(1219695..1219766) Runella slithyformis DSM 19594 10869558 Runsl_R0013 tRNA Runsl_R0013 NC_015703.1 1366983 1367067 R tRNA-Leu complement(1366983..1367067) Runella slithyformis DSM 19594 10869695 Runsl_R0014 tRNA Runsl_R0014 NC_015703.1 1440216 1440291 R tRNA-Thr complement(1440216..1440291) Runella slithyformis DSM 19594 10869782 Runsl_R0017 tRNA Runsl_R0017 NC_015703.1 1932612 1932684 R tRNA-OTHER complement(1932612..1932684) Runella slithyformis DSM 19594 10870235 Runsl_R0018 tRNA Runsl_R0018 NC_015703.1 1932760 1932833 R tRNA-Ile complement(1932760..1932833) Runella slithyformis DSM 19594 10870236 Runsl_R0020 tRNA Runsl_R0020 NC_015703.1 1955247 1955322 D tRNA-Met 1955247..1955322 Runella slithyformis DSM 19594 10870257 Runsl_R0021 tRNA Runsl_R0021 NC_015703.1 2053225 2053307 D tRNA-Tyr 2053225..2053307 Runella slithyformis DSM 19594 10870338 Runsl_R0022 tRNA Runsl_R0022 NC_015703.1 2053368 2053440 D tRNA-Gly 2053368..2053440 Runella slithyformis DSM 19594 10870339 Runsl_R0023 tRNA Runsl_R0023 NC_015703.1 2053537 2053611 D tRNA-Thr 2053537..2053611 Runella slithyformis DSM 19594 10870340 Runsl_R0024 tRNA Runsl_R0024 NC_015703.1 2058248 2058321 D tRNA-Trp 2058248..2058321 Runella slithyformis DSM 19594 10870344 Runsl_R0025 tRNA Runsl_R0025 NC_015703.1 3442434 3442504 D tRNA-Cys 3442434..3442504 Runella slithyformis DSM 19594 10871493 Runsl_R0026 tRNA Runsl_R0026 NC_015703.1 3782350 3782426 R tRNA-Met complement(3782350..3782426) Runella slithyformis DSM 19594 10871773 Runsl_R0027 tRNA Runsl_R0027 NC_015703.1 3857277 3857366 R tRNA-Ser complement(3857277..3857366) Runella slithyformis DSM 19594 10871838 Runsl_R0028 tRNA Runsl_R0028 NC_015703.1 3914158 3914231 R tRNA-Pro complement(3914158..3914231) Runella slithyformis DSM 19594 10871891 Runsl_R0029 tRNA Runsl_R0029 NC_015703.1 3914827 3914898 D tRNA-Glu 3914827..3914898 Runella slithyformis DSM 19594 10871893 Runsl_R0030 tRNA Runsl_R0030 NC_015703.1 4047099 4047175 R tRNA-His complement(4047099..4047175) Runella slithyformis DSM 19594 10872009 Runsl_R0031 tRNA Runsl_R0031 NC_015703.1 4172173 4172257 D tRNA-Leu 4172173..4172257 Runella slithyformis DSM 19594 10872126 Runsl_R0034 tRNA Runsl_R0034 NC_015703.1 4527967 4528040 R tRNA-Gln complement(4527967..4528040) Runella slithyformis DSM 19594 10872462 Runsl_R0035 tRNA Runsl_R0035 NC_015703.1 4571900 4571977 D tRNA-Val 4571900..4571977 Runella slithyformis DSM 19594 10872502 Runsl_R0036 tRNA Runsl_R0036 NC_015703.1 4600154 4600229 D tRNA-Gly 4600154..4600229 Runella slithyformis DSM 19594 10872525 Runsl_R0037 tRNA Runsl_R0037 NC_015703.1 4602769 4602846 R tRNA-Val complement(4602769..4602846) Runella slithyformis DSM 19594 10872529 Runsl_R0038 tRNA Runsl_R0038 NC_015703.1 4602877 4602954 R tRNA-Val complement(4602877..4602954) Runella slithyformis DSM 19594 10872530 Runsl_R0039 tRNA Runsl_R0039 NC_015703.1 4608834 4608910 D tRNA-Ala 4608834..4608910 Runella slithyformis DSM 19594 10872537 Runsl_R0040 tRNA Runsl_R0040 NC_015703.1 4976618 4976691 R tRNA-Asp complement(4976618..4976691) Runella slithyformis DSM 19594 10872838 Runsl_R0041 tRNA Runsl_R0041 NC_015703.1 5009457 5009544 D tRNA-Ser 5009457..5009544 Runella slithyformis DSM 19594 10872869 Runsl_R0042 tRNA Runsl_R0042 NC_015703.1 5261821 5261894 R tRNA-Arg complement(5261821..5261894) Runella slithyformis DSM 19594 10873106 Runsl_R0043 tRNA Runsl_R0043 NC_015703.1 5291116 5291191 R tRNA-Thr complement(5291116..5291191) Runella slithyformis DSM 19594 10873131 Runsl_R0044 tRNA Runsl_R0044 NC_015703.1 5291229 5291304 R tRNA-Thr complement(5291229..5291304) Runella slithyformis DSM 19594 10873132 Runsl_R0045 tRNA Runsl_R0045 NC_015703.1 5362041 5362114 D tRNA-Met 5362041..5362114 Runella slithyformis DSM 19594 10873202 Runsl_R0046 tRNA Runsl_R0046 NC_015703.1 5963207 5963281 R tRNA-Pro complement(5963207..5963281) Runella slithyformis DSM 19594 10873676 Runsl_R0047 tRNA Runsl_R0047 NC_015703.1 5963320 5963406 R tRNA-Ser complement(5963320..5963406) Runella slithyformis DSM 19594 10873677 Runsl_R0048 tRNA Runsl_R0048 NC_015703.1 6000189 6000272 R tRNA-Leu complement(6000189..6000272) Runella slithyformis DSM 19594 10873714 Runsl_R0049 tRNA Runsl_R0049 NC_015703.1 6032428 6032500 R tRNA-Gly complement(6032428..6032500) Runella slithyformis DSM 19594 10873743 Runsl_R0050 tRNA Runsl_R0050 NC_015703.1 6149488 6149563 R tRNA-Phe complement(6149488..6149563) Runella slithyformis DSM 19594 10873846 Runsl_R0051 tRNA Runsl_R0051 NC_015703.1 6198844 6198916 R tRNA-Lys complement(6198844..6198916) Runella slithyformis DSM 19594 10873890 Runsl_R0052 tRNA Runsl_R0052 NC_015703.1 6419334 6419410 R tRNA-Arg complement(6419334..6419410) Runella slithyformis DSM 19594 10874087 Runsl_R0002 rRNA Runsl_R0002 NC_015703.1 240319 240430 R 5S ribosomal RNA complement(240319..240430) Runella slithyformis DSM 19594 10868707 Runsl_R0003 rRNA Runsl_R0003 NC_015703.1 240647 243449 R 23S ribosomal RNA complement(240647..243449) Runella slithyformis DSM 19594 10868708 Runsl_R0006 rRNA Runsl_R0006 NC_015703.1 243792 245284 R 16S ribosomal RNA complement(243792..245284) Runella slithyformis DSM 19594 10868711 Runsl_R0015 rRNA Runsl_R0015 NC_015703.1 1929419 1929530 R 5S ribosomal RNA complement(1929419..1929530) Runella slithyformis DSM 19594 10870233 Runsl_R0016 rRNA Runsl_R0016 NC_015703.1 1929747 1932549 R 23S ribosomal RNA complement(1929747..1932549) Runella slithyformis DSM 19594 10870234 Runsl_R0019 rRNA Runsl_R0019 NC_015703.1 1932891 1934383 R 16S ribosomal RNA complement(1932891..1934383) Runella slithyformis DSM 19594 10870237