-- dump date 20140620_042205 -- class Genbank::CDS -- table cds_note -- id note YP_004646344.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107:IPR002104; KEGG: sli:Slin_6972 integrase family protein; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Integrase family protein YP_004646345.1 PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR006584:IPR003088:IPR005084; KEGG: sli:Slin_3440 PKD domain containing protein; PFAM: PKD; Cytochrome c, class I; Carbohydrate binding domain, family 6; SMART: PKD; Cellulose binding, type IV; SPTR: PKD domain containing protein YP_004646346.1 PFAM: Cytochrome c; Glucose / Sorbosone dehydrogenase; Carbohydrate binding module (family 6); PKD domain YP_004646347.1 KEGG: sli:Slin_3883 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646348.1 KEGG: sli:Slin_3884 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646349.1 COGs: COG0680 Ni Fe-hydrogenase maturation factor; InterPro IPR000671; KEGG: sli:Slin_3885 hydrogenase maturation protease; PFAM: Peptidase A31, hydrogen uptake protein; SPTR: Hydrogenase maturation protease; TIGRFAM: Peptidase A31, hydrogen uptake protein; manually curated YP_004646350.1 PFAM: Hydrogenase maturation protease; TIGRFAM: hydrogenase maturation protease; COGs: COG0374 Ni Fe-hydrogenase I large subunit; InterPro IPR001501; KEGG: sli:Slin_3886 nickel-dependent hydrogenase large subunit; PFAM: Nickel-dependent hydrogenase, large subunit; PRIAM: Cytochrome-c3 hydrogenase; SPTR: Nickel-dependent hydrogenase large subunit YP_004646351.1 PFAM: Nickel-dependent hydrogenase; COGs: COG1740 Ni Fe-hydrogenase I small subunit; InterPro IPR006137; KEGG: sli:Slin_3887 NADH ubiquinone oxidoreductase 20 kDa subunit; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; PRIAM: Hydrogenase (acceptor); SPTR: NADH ubiquinone oxidoreductase 20 kDa subunit YP_004646352.1 PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: hydrogenase (NiFe) small subunit (hydA); COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: sli:Slin_3888 TetR family transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family YP_004646353.1 PFAM: Bacterial regulatory proteins, tetR family; KEGG: sli:Slin_3889 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646354.1 InterPro IPR001647; KEGG: rbi:RB2501_04325 putative transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family YP_004646355.1 PFAM: Bacterial regulatory proteins, tetR family; COGs: COG1259 conserved hypothetical protein; InterPro IPR003729; KEGG: sli:Slin_3873 hypothetical protein; PFAM: Protein of unknown function DUF151; SPTR: Putative uncharacterized protein YP_004646356.1 PFAM: Uncharacterised ACR, COG1259; KEGG: sli:Slin_3874 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646357.1 InterPro IPR001258; KEGG: sli:Slin_3876 NHL repeat containing protein; PFAM: NHL repeat; SPTR: NHL repeat containing protein YP_004646358.1 COGs: COG0309 Hydrogenase maturation factor; InterPro IPR011854:IPR000728:IPR010918; KEGG: sli:Slin_3877 hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; SPTR: Hydrogenase expression/formation protein HypE; TIGRFAM: Hydrogenase expression/formation protein HypE YP_004646359.1 PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: hydrogenase expression/formation protein HypE; COGs: COG0409 Hydrogenase maturation factor; InterPro IPR002780; KEGG: sli:Slin_3878 hydrogenase expression/formation protein HypD; PFAM: Hydrogenase formation HypD protein; SPTR: Hydrogenase expression/formation protein HypD; TIGRFAM: Hydrogenase formation HypD protein YP_004646360.1 PFAM: Hydrogenase formation hypA family; TIGRFAM: hydrogenase expression/formation protein HypD; COGs: COG0298 Hydrogenase maturation factor; InterPro IPR001109; KEGG: sli:Slin_3879 hydrogenase assembly chaperone HypC/HupF; PFAM: Hydrogenase expression/formation protein, HupF/HypC; SPTR: Hydrogenase assembly chaperone hypC/hupF; TIGRFAM: Hydrogenase expression/formation protein, HupF/HypC YP_004646361.1 PFAM: HupF/HypC family; TIGRFAM: hydrogenase assembly chaperone HypC/HupF; COGs: COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatase; InterPro IPR003672; KEGG: gur:Gura_0774 cobaltochelatase; PFAM: CobN/magnesium chelatase; PRIAM: Magnesium chelatase; SPTR: Cobaltochelatase CobN subunit YP_004646362.1 PFAM: CobN/Magnesium Chelatase; COGs: COG4744 conserved hypothetical protein; InterPro IPR018676; KEGG: dpr:Despr_3126 hypothetical protein; PFAM: Protein of unknown function DUF2149; SPTR: Putative uncharacterized protein YP_004646363.1 PFAM: Uncharacterized conserved protein (DUF2149); KEGG: mmz:MmarC7_1200 MotA/TolQ/ExbB proton channel; SPTR: Hypothetical membrane protein, MotA/TolQ/ExbB proton channel family YP_004646364.1 PFAM: MotA/TolQ/ExbB proton channel family; KEGG: sli:Slin_3875 urease accessory protein; SPTR: Putative urease accessory protein YP_004646365.1 PFAM: High-affinity nickel-transport protein; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_5364 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug YP_004646366.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG0068 Hydrogenase maturation factor; InterPro IPR004421:IPR001792:IPR011125:IPR006070; KEGG: sli:Slin_3880 (NiFe) hydrogenase maturation protein HypF; PFAM: Sua5/YciO/YrdC, N-terminal; Acylphosphatase-like; Zinc finger, HypF-type; SPTR: (NiFe) hydrogenase maturation protein HypF; TIGRFAM: Hydrogenase maturation factor, HypF-type YP_004646367.1 PFAM: HypF finger; yrdC domain; Acylphosphatase; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; COGs: COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; InterPro IPR004392:IPR003495; KEGG: sli:Slin_3881 hydrogenase accessory protein HypB; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; SPTR: Hydrogenase accessory protein HypB; TIGRFAM: Hydrogenase accessory protein HypB YP_004646368.1 PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: hydrogenase accessory protein HypB; COGs: COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); InterPro IPR000688; KEGG: sli:Slin_3882 hydrogenase expression/synthesis HypA; PFAM: Hydrogenase nickel incorporation protein HypA/HybF; SPTR: Hydrogenase expression/synthesis HypA YP_004646369.1 PFAM: Hydrogenase expression/synthesis hypA family; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: cbe:Cbei_3584 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1; SPTR: Proline iminopeptidase-like protein YP_004646370.1 PFAM: alpha/beta hydrolase fold YP_004646371.1 COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: npu:Npun_F0634 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase YP_004646372.1 PFAM: Beta-lactamase; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sus:Acid_0065 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase, putative YP_004646373.1 PFAM: Beta-lactamase; KEGG: sli:Slin_2780 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646374.1 TIGRFAM: YD repeat (two copies); COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_1794 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004646375.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_4868 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS YP_004646376.1 PFAM: Histidine kinase; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_4868 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS YP_004646377.1 PFAM: Histidine kinase; COGs: COG0684 Demethylmenaquinone methyltransferase; InterPro IPR005493; KEGG: caa:Caka_0515 dimethylmenaquinone methyltransferase; PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; SPTR: Putative uncharacterized protein YP_004646378.1 PFAM: Demethylmenaquinone methyltransferase; COGs: COG3386 Gluconolactonase; InterPro IPR013658; KEGG: ttr:Tter_2396 SMP-30/gluconolaconase/LRE domain protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; SPTR: Possible Gluconolactonase YP_004646379.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: phe:Phep_2598 major facilitator superfamily protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Putative uncharacterized protein YP_004646380.1 PFAM: Major Facilitator Superfamily; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104; KEGG: dtu:Dtur_1802 beta-mannosidase; PFAM: Glycoside hydrolase family 2, carbohydrate-binding; PRIAM: Beta-mannosidase; SPTR: Putative uncharacterized protein YP_004646381.1 PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: psa:PST_3895 short chain dehydrogenase/reductase family oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Oxidoreductase, short-chain dehydrogenase/reductase family YP_004646382.1 PFAM: short chain dehydrogenase; KEGG: coc:Coch_1013 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646383.1 PFAM: Cellulase (glycosyl hydrolase family 5); COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341:IPR013342; KEGG: smd:Smed_5845 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; PRIAM: Glucarate dehydratase; SPTR: Mandelate racemase/muconate lactonizing protein YP_004646384.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; COGs: COG3693 Beta-1 4-xylanase; InterPro IPR001000; KEGG: ote:Oter_3662 glycoside hydrolase family protein; PFAM: Glycoside hydrolase, family 10; SMART: Glycoside hydrolase, family 10; SPTR: Glycoside hydrolase family 10 YP_004646385.1 PFAM: Glycosyl hydrolase family 10; KEGG: plm:Plim_0289 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646386.1 InterPro IPR012944; KEGG: dfe:Dfer_0713 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein YP_004646387.1 PFAM: SusD family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_0714 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004646388.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG1414 Transcriptional regulator; InterPro IPR005471; KEGG: psn:Pedsa_0488 transcriptional regulator, IclR family; PFAM: Transcriptional regulator IclR, N-terminal; SMART: Transcriptional regulator IclR, N-terminal; SPTR: Putative uncharacterized protein YP_004646389.1 PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator YP_004646392.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627; KEGG: pbs:Plabr_0594 RNA polymerase, sigma subunit, ECF family; PFAM: RNA polymerase sigma-70 region 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70 YP_004646393.1 PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; manually curated YP_004646394.1 KEGG: sli:Slin_3648 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646395.1 COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: sli:Slin_3649 cobyrinic acid ac-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Cobyrinic acid ac-diamide synthase YP_004646396.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; COGs: COG5527 Protein involved in initiation of plasmid replication; InterPro IPR000525; KEGG: sli:Slin_7066 initiator RepB protein; PFAM: Initiator Rep protein; SPTR: Initiator RepB protein YP_004646397.1 PFAM: Initiator Replication protein; manually curated YP_004646398.1 COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: dfe:Dfer_3737 AAA ATPase; SMART: ATPase, AAA+ type, core; SPTR: AAA ATPase YP_004646401.1 COGs: COG2141 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase; InterPro IPR016048; KEGG: sli:Slin_3890 luciferase-like protein; PFAM: Luciferase-like, subgroup; SPTR: Luciferase-like, subgroup; TIGRFAM: putative oxidoreductase, LLM family YP_004646402.1 PFAM: Luciferase-like monooxygenase; TIGRFAM: probable oxidoreductase, LLM family YP_004646403.1 COGs: COG2603 ATPase; InterPro IPR017582:IPR001763; KEGG: sli:Slin_4991 tRNA 2-selenouridine synthase; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: tRNA 2-selenouridine synthase; TIGRFAM: tRNA 2-selenouridine synthase YP_004646404.1 PFAM: Rhodanese-like domain; TIGRFAM: tRNA 2-selenouridine synthase; COGs: COG0709 Selenophosphate synthase; HAMAP: Selenide, water dikinase; InterPro IPR004536:IPR000728:IPR010918; KEGG: sli:Slin_3011 selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal; SPTR: Selenide, water dikinase; TIGRFAM: Selenide water dikinase YP_004646405.1 PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: selenium donor protein; KEGG: sli:Slin_0591 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646406.1 PFAM: Trehalose utilisation; KEGG: plm:Plim_4136 hypothetical protein; SPTR: Acyl-CoA thioesterase I-like protein YP_004646408.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR000014:IPR001610:IPR003661:IPR003594:IPR013767:IPR0136 55:IPR013656; KEGG: sli:Slin_0618 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-3; PAS fold; PAS fold-4; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS YP_004646409.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; KEGG: dfe:Dfer_2112 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646410.1 InterPro IPR001077; KEGG: sli:Slin_6371 O-methyltransferase family 2; PFAM: O-methyltransferase, family 2; SPTR: O-methyltransferase family 2 YP_004646411.1 PFAM: O-methyltransferase; COGs: COG1260 Myo-inositol-1-phosphate synthase; InterPro IPR002587:IPR013021; KEGG: cpi:Cpin_2400 inositol-3-phosphate synthase; PFAM: Myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase, GAPDH-like; PRIAM: Inositol-3-phosphate synthase; SPTR: Inositol-3-phosphate synthase YP_004646412.1 PFAM: Myo-inositol-1-phosphate synthase; InterPro IPR005181:IPR006104:IPR002509; KEGG: sli:Slin_1717 hypothetical protein; PFAM: Protein of unknown function DUF303, acetylesterase putative; Glycoside hydrolase family 2, carbohydrate-binding; Polysaccharide deacetylase; SPTR: Putative uncharacterized protein YP_004646413.1 PFAM: Domain of unknown function (DUF303); Polysaccharide deacetylase; Glycosyl hydrolases family 2, sugar binding domain; COGs: COG3693 Beta-1 4-xylanase; InterPro IPR001000; KEGG: ppn:Palpr_2306 EndO-1,4-beta-xylanase; PFAM: Glycoside hydrolase, family 10; PRIAM: Endo-1,4-beta-xylanase; SMART: Glycoside hydrolase, family 10; SPTR: Endo-1,4-beta-xylanase YP_004646414.1 PFAM: Glycosyl hydrolase family 10; InterPro IPR006710; KEGG: cao:Celal_0855 xylan 1,4-beta-xylosidase; PFAM: Glycoside hydrolase, family 43; PRIAM: Xylan 1,4-beta-xylosidase; SPTR: Xylan 1,4-beta-xylosidase YP_004646415.1 PFAM: Glycosyl hydrolases family 43; COGs: COG2211 Na+/melibiose symporter and related transporter; InterPro IPR001927:IPR011701; KEGG: fjo:Fjoh_1997 sugar (glycoside-pentoside-hexuronide) transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Sugar (Glycoside-Pentoside-Hexuronide) transporter; TIGRFAM: Sodium:galactoside symporter YP_004646416.1 PFAM: Major Facilitator Superfamily; TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; COGs: COG3693 Beta-1 4-xylanase; InterPro IPR001000; KEGG: sli:Slin_1404 endo-1,4-beta-xylanase; PFAM: Glycoside hydrolase, family 10; PRIAM: Endo-1,4-beta-xylanase; SMART: Glycoside hydrolase, family 10; SPTR: Endo-1,4-beta-xylanase YP_004646417.1 PFAM: Glycosyl hydrolase family 10; KEGG: ppn:Palpr_1422 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646418.1 COGs: COG2382 Enterochelin esterase; InterPro IPR000801:IPR004193; KEGG: sli:Slin_1407 esterase; PFAM: Putative esterase; Glycoside hydrolase, family 13, N-terminal; SPTR: Putative esterase YP_004646419.1 PFAM: Putative esterase; COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: sli:Slin_1411 esterase; PFAM: Putative esterase; SPTR: Putative esterase YP_004646420.1 PFAM: Putative esterase; COGs: COG2382 Enterochelin esterase; InterPro IPR004193:IPR000801; KEGG: sli:Slin_1412 esterase; PFAM: Putative esterase; Glycoside hydrolase, family 13, N-terminal; SPTR: Putative esterase YP_004646421.1 PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Putative esterase; COGs: COG2382 Enterochelin esterase; InterPro IPR004193:IPR000801; KEGG: sli:Slin_1413 esterase; PFAM: Putative esterase; Glycoside hydrolase, family 13, N-terminal; SPTR: Putative esterase YP_004646422.1 PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Putative esterase; COGs: COG2382 Enterochelin esterase; InterPro IPR004193:IPR000801; KEGG: sli:Slin_1414 esterase; PFAM: Putative esterase; Glycoside hydrolase, family 13, N-terminal; SPTR: Putative esterase YP_004646423.1 PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Putative esterase; COGs: COG2272 Carboxylesterase type B; InterPro IPR005181:IPR002018; KEGG: ppn:Palpr_1657 carboxylesterase type B; PFAM: Carboxylesterase, type B; Protein of unknown function DUF303, acetylesterase putative; PRIAM: Acetylcholinesterase; SPTR: Carboxylesterase type B YP_004646424.1 PFAM: Domain of unknown function (DUF303); Carboxylesterase; COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: sli:Slin_1420 glycoside hydrolase family 43; PFAM: Glycoside hydrolase, family 43; SPTR: Glycoside hydrolase family 43 YP_004646425.1 PFAM: Glycosyl hydrolases family 43; COGs: COG3533 conserved hypothetical protein; InterPro IPR012878; KEGG: sli:Slin_1422 hypothetical protein; PFAM: Protein of unknown function DUF1680; SPTR: Putative uncharacterized protein YP_004646426.1 PFAM: Putative glycosyl hydrolase of unknown function (DUF1680); COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: sli:Slin_1423 xylan 1,4-beta-xylosidase; PFAM: Glycoside hydrolase, family 43; PRIAM: Alpha-N-arabinofuranosidase; SPTR: Xylan 1,4-beta-xylosidase YP_004646427.1 PFAM: Glycosyl hydrolases family 43; Signal predicted by SignalP 3.0 HMM; IMG reference gene:2505788930_SP YP_004646428.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004646430.1 KEGG: dfe:Dfer_5228 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646432.1 KEGG: pdi:BDI_2232 mobilization protein BmgB; SPTR: Mobilization protein BmgB YP_004646433.1 InterPro IPR005094; KEGG: pdi:BDI_2231 mobilization protein BmgA; PFAM: Endonuclease relaxase, MobA/VirD2; SPTR: Putative uncharacterized protein YP_004646434.1 PFAM: Relaxase/Mobilisation nuclease domain; COGs: COG3549 Plasmid maintenance system killer protein; InterPro IPR007711; KEGG: dfe:Dfer_2504 plasmid maintenance system killer; PFAM: Plasmid maintenance system killer; SPTR: Plasmid maintenance system killer YP_004646435.1 PFAM: Plasmid maintenance system killer protein; COGs: COG3093 Plasmid maintenance system antidote protein; InterPro IPR013430:IPR001387; KEGG: dfe:Dfer_2505 XRE family plasmid maintenance system antidote protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Plasmid maintenance system antidote protein, XRE family; TIGRFAM: Addiction module antidote protein, HigA YP_004646436.1 PFAM: Helix-turn-helix; TIGRFAM: addiction module antidote protein, HigA family YP_004646441.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: wvi:Weevi_1329 peptidase M23; PFAM: Peptidase M23; SPTR: NlpD YP_004646442.1 PFAM: Peptidase family M23; COGs: COG1864 DNA/RNA endonuclease G NUC1; InterPro IPR003961:IPR020821:IPR001604; KEGG: ava:Ava_4000 DNA/RNA non-specific endonuclease; PFAM: DNA/RNA non-specific endonuclease; Fibronectin, type III; SMART: Extracellular Endonuclease, subunit A; Fibronectin, type III; SPTR: DNA/RNA non-specific endonuclease YP_004646443.1 PFAM: DNA/RNA non-specific endonuclease; Fibronectin type III domain; COGs: COG3505 Type IV secretory pathway VirD4 protein; InterPro IPR003688; KEGG: psn:Pedsa_1580 hypothetical protein; PFAM: TRAG protein; SPTR: TraG family protein YP_004646444.1 PFAM: TraG/TraD family; KEGG: bfs:pBF9343.47c putative plasmid transfer protein; SPTR: Conjugal transfer protein TraE YP_004646447.1 KEGG: lby:Lbys_0168 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646448.1 COGs: COG3451 Type IV secretory pathway VirB4 protein; KEGG: zpr:ZPR_3458 type IV secretory pathway VirB4 components-like protein; SPTR: Type IV secretory pathway VirB4 components-like protein; TIGRFAM: Bacteroides conjugation system ATPase, TraG family YP_004646449.1 PFAM: Domain of unknown function DUF87; TIGRFAM: Bacteroides conjugation system ATPase, TraG family; KEGG: psn:Pedsa_1679 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646450.1 KEGG: fjo:Fjoh_4353 TraJ family protein conjugative transposon; SPTR: Homologues of TraJ from Bacteroides conjugative transposon YP_004646451.1 PFAM: TrbL/VirB6 plasmid conjugal transfer protein YP_004646452.1 KEGG: bsa:Bacsa_2556 conjugative transposon TraK protein; SPTR: Conjugative transposon TraK protein; TIGRFAM: Bacteroides conjugative transposon TraK protein YP_004646453.1 TIGRFAM: Bacteroides conjugative transposon TraK protein YP_004646454.1 KEGG: bsa:Bacsa_1115 conjugative transposon TraM protein; SPTR: Putative uncharacterized protein YP_004646455.1 PFAM: Protein of unknown function (DUF3714); TIGRFAM: Bacteroides conjugative transposon TraM protein; KEGG: bth:BT_2595 conjugate transposon protein; SPTR: Putative uncharacterized protein; TIGRFAM: Bacteroides conjugative transposon TraN protein YP_004646456.1 TIGRFAM: Bacteroides conjugative transposon TraN protein; KEGG: pgn:PGN_0593 putative conjugate transposon protein TraA; SPTR: TraO protein YP_004646457.1 PFAM: Conjugative transposon protein TraO YP_004646459.1 KEGG: pvi:Cvib_0123 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646460.1 PFAM: Protein of unknown function (DUF3127); InterPro IPR006119; KEGG: bsa:Bacsa_3704 resolvase domain; PFAM: Resolvase, N-terminal; SPTR: Putative uncharacterized protein YP_004646461.1 PFAM: Resolvase, N terminal domain YP_004646462.1 KEGG: sli:Slin_3349 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646465.1 COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: bfr:BF3681 C-5 cytosine-specific DNA-methylase; PFAM: DNA methylase, C-5 cytosine-specific; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA methylase, C-5 cytosine-specific YP_004646466.1 PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); KEGG: cph:Cpha266_0081 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646468.1 KEGG: sli:Slin_2296 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646470.1 KEGG: bpt:Bpet4501 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646471.1 manually curated YP_004646472.1 PFAM: Metallo-beta-lactamase superfamily; InterPro IPR004027; KEGG: psn:Pedsa_1884 sec-C motif domain protein; PFAM: SEC-C motif; SPTR: SEC-C motif domain protein YP_004646473.1 PFAM: SEC-C motif; KEGG: sat:SYN_00502 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646474.1 COGs: COG2333 hydrolase (metallo-beta-lactamase superfamily); KEGG: aba:Acid345_1139 metallo-beta-lactamase superfamily hydrolase; SPTR: Hydrolase (Metallo-beta-lactamase superfamily) YP_004646475.1 SPTR: Putative uncharacterized protein YP_004646476.1 COGs: COG2333 hydrolase (metallo-beta-lactamase superfamily); KEGG: sbn:Sbal195_4563 beta-lactamase domain-containing protein; SPTR: Putative uncharacterized protein YP_004646477.1 PFAM: Metallo-beta-lactamase superfamily; KEGG: pgi:PG1202 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646478.1 COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119; KEGG: sli:Slin_7010 resolvase domain protein; PFAM: Resolvase, N-terminal; SPTR: Resolvase domain protein YP_004646479.1 PFAM: Resolvase, N terminal domain; KEGG: fjo:Fjoh_3055 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated YP_004646480.1 InterPro IPR000594; KEGG: fjo:Fjoh_3056 hypothetical protein; PFAM: UBA/THIF-type NAD/FAD binding fold; SPTR: Uba/thif family NAD/fad binding fold protein YP_004646481.1 PFAM: ThiF family; KEGG: fjo:Fjoh_3057 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646482.1 KEGG: deh:cbdb_A103 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646484.1 KEGG: deh:cbdb_A102 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646485.1 KEGG: deh:cbdb_A101 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646486.1 InterPro IPR001387; KEGG: deh:cbdb_B6 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Putative uncharacterized protein YP_004646487.1 PFAM: Helix-turn-helix; KEGG: ypb:YPTS_3418 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646488.1 InterPro IPR006530; KEGG: wvi:Weevi_0867 rhs repeat-associated core domain protein; PFAM: YD repeat; SPTR: Cell well associated RhsD protein; TIGRFAM: RHS repeat-associated core domain; YD repeat YP_004646489.1 TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies); KEGG: azc:AZC_2635 hypothetical protein; SPTR: Fibronectin type III domain protein YP_004646490.1 KEGG: fal:FRAAL2567 hypothetical protein; SPTR: Putative secreted protein YP_004646491.1 InterPro IPR003615:IPR002711; KEGG: cyt:cce_4359 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: Putative uncharacterized protein YP_004646492.1 PFAM: HNH endonuclease YP_004646493.1 COGs: COG4227 Antirestriction protein; InterPro IPR013610; KEGG: sli:Slin_6843 domain of unknown function DUF1738; PFAM: Domain of unknown function DUF1738; SPTR: Putative uncharacterized protein YP_004646494.1 PFAM: Domain of unknown function (DUF1738) YP_004646495.1 COGs: COG5527 Protein involved in initiation of plasmid replication; InterPro IPR000525; KEGG: sli:Slin_7050 initiator RepB protein; PFAM: Initiator Rep protein; SPTR: Initiator RepB protein YP_004646496.1 PFAM: Initiator Replication protein; Signal predicted by SignalP 3.0 HMM; IMG reference gene:2505789089_SP YP_004646497.1 PFAM: Glycosyl transferases group 1; COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR001360:IPR005913; KEGG: cyj:Cyan7822_5881 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; Glycoside hydrolase, family 1; PRIAM: dTDP-4-dehydrorhamnose reductase; SPTR: dTDP-4-dehydrorhamnose reductase YP_004646498.1 PFAM: RmlD substrate binding domain; Glycosyl hydrolase family 1; TIGRFAM: dTDP-4-dehydrorhamnose reductase; COGs: COG3685 conserved hypothetical protein; InterPro IPR010287; KEGG: fba:FIC_01702 protein of unknown function DUF892; PFAM: Protein of unknown function DUF892; SPTR: Putative uncharacterized protein YP_004646499.1 PFAM: Domain of unknown function (DUF892); COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: ttr:Tter_0621 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; manually curated YP_004646500.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG3040 Bacterial lipocalin; InterPro IPR013208; KEGG: chu:CHU_0414 outer membrane lipoprotein; PFAM: Lipocalin-like; SPTR: Outer membrane lipoprotein (Lipocalin) YP_004646501.1 PFAM: Lipocalin-like domain; InterPro IPR010496; KEGG: dfe:Dfer_4250 protein of unknown function DUF1080; PFAM: Protein of unknown function DUF1080; SPTR: Putative uncharacterized protein YP_004646502.1 PFAM: Domain of Unknown Function (DUF1080); InterPro IPR013427:IPR004155; KEGG: dfe:Dfer_0143 heme-binding protein; PFAM: PBS lyase HEAT-like repeat; SPTR: Heme-binding protein; TIGRFAM: Putative haem-binding region YP_004646503.1 PFAM: Cytochrome c; PBS lyase HEAT-like repeat; TIGRFAM: putative heme-binding domain, Pirellula/Verrucomicrobium type; InterPro IPR001087; KEGG: sli:Slin_3845 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family YP_004646504.1 PFAM: GDSL-like Lipase/Acylhydrolase; COGs: COG2936 acyl esterase; InterPro IPR005674:IPR000383:IPR013736; KEGG: phe:Phep_3711 peptidase S15; SPTR: Peptidase S15; TIGRFAM: CocE/NonD hydrolase YP_004646505.1 PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: putative hydrolase, CocE/NonD family; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: sli:Slin_6665 integrase family protein; PFAM: Integrase, catalytic core, phage; SPTR: Integrase family protein YP_004646506.1 PFAM: Phage integrase family; COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: bvu:BVU_0570 hypothetical protein; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein YP_004646507.1 COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; HAMAP: DNA polymerase IV; InterPro IPR001126; KEGG: sli:Slin_1272 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like; PRIAM: DNA-directed DNA polymerase; SPTR: DNA polymerase IV YP_004646508.1 PFAM: impB/mucB/samB family C-terminal; impB/mucB/samB family; IMS family HHH motif; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR006311:IPR012307; KEGG: sli:Slin_1842 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004646509.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: sli:Slin_1843 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004646510.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold; COGs: COG3802 conserved hypothetical protein; InterPro IPR002529; KEGG: mci:Mesci_5979 fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like; SPTR: Fumarylacetoacetate (FAA) hydrolase YP_004646511.1 PFAM: Fumarylacetoacetate (FAA) hydrolase family; InterPro IPR019587; KEGG: mel:Metbo_2377 polyketide cyclase/dehydrase; PFAM: Polyketide cyclase/dehydrase; SPTR: Putative uncharacterized protein YP_004646512.1 PFAM: Polyketide cyclase / dehydrase and lipid transport; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: dfe:Dfer_1119 putative transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: Putative transcriptional regulator, Crp/Fnr family YP_004646513.1 PFAM: Cyclic nucleotide-binding domain; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: ara:Arad_3007 sarcosine oxidase protein; PFAM: FAD dependent oxidoreductase; SPTR: Sarcosine oxidase protein YP_004646514.1 PFAM: FAD dependent oxidoreductase; COGs: COG2721 Altronate dehydratase; InterPro IPR013974:IPR007392; KEGG: sli:Slin_0416 altronate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase, C-terminal; SAF domain; PRIAM: Altronate dehydratase; SPTR: Altronate dehydratase YP_004646515.1 PFAM: SAF domain; D-galactarate dehydratase / Altronate hydrolase, C terminus; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: csa:Csal_1140 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; PRIAM: Aldehyde dehydrogenase (NADP(+)); SPTR: Aldehyde Dehydrogenase YP_004646516.1 PFAM: Aldehyde dehydrogenase family; COGs: COG3970 Fumarylacetoacetate (FAA) hydrolase family protein; InterPro IPR002529; KEGG: sli:Slin_1198 fumarylacetoacetate hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like; SPTR: Fumarylacetoacetate (FAA) hydrolase YP_004646517.1 PFAM: Fumarylacetoacetate (FAA) hydrolase family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: psn:Pedsa_1486 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004646518.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG5527 Protein involved in initiation of plasmid replication; InterPro IPR000525; KEGG: sli:Slin_6661 initiator RepB protein; PFAM: Initiator Rep protein; SPTR: Initiator RepB protein YP_004646519.1 PFAM: Initiator Replication protein; COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: sli:Slin_3649 cobyrinic acid ac-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Cobyrinic acid ac-diamide synthase YP_004646520.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; KEGG: sli:Slin_3648 hypothetical protein; SPTR: Putative uncharacterized protein YP_004646521.1 COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR003088; KEGG: sli:Slin_5485 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Protein up-regulated by thyroid hormone-putative PQQ-dependent glucose dehydrogenase YP_004646522.1 PFAM: Cytochrome c; Glucose / Sorbosone dehydrogenase; InterPro IPR007272; KEGG: lby:Lbys_0966 hypothetical protein; PFAM: Protein of unknown function DUF395, YeeE/YedE; SPTR: Putative uncharacterized protein YP_004646523.1 PFAM: YeeE/YedE family (DUF395); InterPro IPR007272; KEGG: sli:Slin_6934 protein of unknown function DUF395 YeeE/YedE; PFAM: Protein of unknown function DUF395, YeeE/YedE; SPTR: Putative uncharacterized protein YP_004646524.1 PFAM: YeeE/YedE family (DUF395); COGs: COG1295 membrane protein; InterPro IPR017039:IPR004664; KEGG: shg:Sph21_2110 ribonuclease BN; PFAM: Ribonuclease BN-related; SPTR: Putative uncharacterized protein; TIGRFAM: Ribonuclease BN YP_004646525.1 PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN); COGs: COG1546 Uncharacterized protein (competence- and mitomycin-induced); InterPro IPR008136; KEGG: dfe:Dfer_0362 CinA domain protein; PFAM: CinA, C-terminal; SPTR: CinA domain protein; TIGRFAM: CinA, C-terminal YP_004646526.1 PFAM: Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA C-terminal domain; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_0452 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004646527.1 PFAM: short chain dehydrogenase; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; KEGG: sli:Slin_0497 short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR YP_004646528.1 Signal predicted by SignalP 3.0 HMM; IMG reference gene:2505789000_SP YP_004653593.1 PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA; KEGG: sli:Slin_0002 hypothetical protein; SPTR: uncharacterized protein YP_004653594.1 COGs: COG1652 Uncharacterized protein containing LysM domain; InterPro IPR002482:IPR007055:IPR018392; KEGG: lby:Lbys_1294 peptidoglycaN-binding lysin domain; PFAM: Peptidoglycan-binding lysin domain; Transport-associated; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Peptidoglycan-binding lysin domain YP_004653595.1 PFAM: phospholipid-binding domain; LysM domain; COGs: COG1052 Lactate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140; KEGG: fjo:Fjoh_1917 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; PRIAM: D-lactate dehydrogenase; SPTR: D-lactate dehydrogenase YP_004653596.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro IPR000182; KEGG: bha:BH1000 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase YP_004653597.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG2367 Beta-lactamase class A; InterPro IPR001466; KEGG: sli:Slin_3212 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase YP_004653598.1 KEGG: lby:Lbys_1886 periplasmic protein; SPTR: periplasmic protein YP_004653599.1 KEGG: cts:Ctha_0434 hypothetical protein; SPTR: uncharacterized protein YP_004653600.1 TIGRFAM: conserved hypothetical protein ( transposase or invertase); COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_6142 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor YP_004653601.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593:IPR003439; KEGG: sli:Slin_0389 ABC transporter; PFAM: ABC transporter-like; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein YP_004653602.1 PFAM: ABC transporter YP_004653603.1 COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR013428:IPR013427:IPR003088; KEGG: sli:Slin_5811 dehydrogenase; PFAM: Cytochrome c, class I; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; haem-binding region YP_004653604.1 PFAM: Cytochrome c; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_3666 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004653605.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004653606.1 KEGG: cpi:Cpin_2142 hypothetical protein; SPTR: uncharacterized protein YP_004653607.1 COGs: COG1770 Protease II; InterPro IPR004106:IPR001375; KEGG: tde:TDE2140 protease II; PRIAM: Oligopeptidase B; SPTR: Oligopeptidase B YP_004653608.1 PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase; InterPro IPR005181; KEGG: fbc:FB2170_02125 sialic acid-specific 9-O-acetylesterase; PFAM: Protein of unknown function DUF303, acetylesterase PRIAM: Sialate O-acetylesterase; SPTR: Sialic acid-specific 9-O-acetylesterase YP_004653609.1 PFAM: Domain of unknown function (DUF303); COGs: COG3509 Poly(3-hydroxybutyrate) depolymerase; KEGG: sli:Slin_3891 poly(3-hydroxybutyrate) depolymerase-like protein; SPTR: Poly(3-hydroxybutyrate) depolymerase-like protein YP_004653610.1 PFAM: Phospholipase/Carboxylesterase; KEGG: psn:Pedsa_0710 hypothetical protein; SPTR: uncharacterized protein YP_004653611.1 COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006103; KEGG: gym:GYMC10_0218 glycoside hydrolase 2 sugar binding protein; PFAM: Glycoside hydrolase 2, carbohydrate-binding; Glycoside hydrolase 2, TIM barrel; SPTR: Glycoside hydrolase 2 sugar binding protein YP_004653612.1 PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; KEGG: dfe:Dfer_3650 hypothetical protein; SPTR: uncharacterized protein YP_004653613.1 PFAM: alpha/beta hydrolase fold; COGs: COG0221 Inorganic pyrophosphatase; InterPro IPR008162; KEGG: sli:Slin_2409 inorganic diphosphatase; PFAM: Inorganic pyrophosphatase; PRIAM: Inorganic diphosphatase; SPTR: Inorganic diphosphatase YP_004653614.1 PFAM: Inorganic pyrophosphatase; COGs: COG0025 NhaP-type Na+/H+ and K+/H+ antiporter; InterPro IPR004705:IPR006153; KEGG: cpi:Cpin_3978 Na+/H+ antiporter; PFAM: Cation/H+ exchanger; SPTR: Na+/H+ antiporter; TIGRFAM: Na+/H+ exchanger, yjcE-like, bacteria YP_004653615.1 PFAM: Sodium/hydrogen exchanger family; TIGRFAM: Na+/H+ antiporter, bacterial form; COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017; KEGG: dfe:Dfer_4016 protein of unknown function DUF224 cysteine-rich region domain protein; PFAM: Cysteine-rich region, CCG; SPTR: uncharacterized protein YP_004653616.1 PFAM: Cysteine-rich domain; KEGG: dfe:Dfer_4015 hypothetical protein; SPTR: uncharacterized protein YP_004653617.1 COGs: COG2989 conserved hypothetical protein; InterPro IPR005490; KEGG: dfe:Dfer_3137 ErfK/YbiS/YcfS/YnhG family protein; PFAM: YkuD domain; SPTR: ErfK/YbiS/YcfS/YnhG family protein YP_004653618.1 PFAM: L,D-transpeptidase catalytic domain; KEGG: dfe:Dfer_3138 hypothetical protein; SPTR: uncharacterized protein YP_004653619.1 PFAM: L,D-transpeptidase catalytic domain; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: dfe:Dfer_0453 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family YP_004653620.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: dfe:Dfer_0452 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SPTR: Histidine kinase YP_004653621.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004653622.1 COGs: COG0560 Phosphoserine phosphatase; InterPro IPR001173:IPR013200; KEGG: cpi:Cpin_0395 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; HAD superfamily hydrolase-like, type 3; SPTR: Glycosyl transferase 2 YP_004653623.1 PFAM: Glycosyl transferase 2; Phosphatase; TIGRFAM: Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; phosphoserine phosphatase SerB; COGs: COG0530 Ca2+/Na+ antiporter; InterPro IPR004837; KEGG: mrb:Mrub_2556 Na+/Ca+ antiporter, CaCA family; PFAM: Sodium/calcium exchanger membrane region; SPTR: Na+/Ca+ antiporter, CaCA family YP_004653624.1 PFAM: Sodium/calcium exchanger protein; TIGRFAM: K+-dependent Na+/Ca+ exchanger related-protein; COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; InterPro IPR004680; KEGG: sli:Slin_1848 citrate transporter; PFAM: Divalent ion symporter; SPTR: Citrate transporter YP_004653625.1 PFAM: Citrate transporter; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: dfe:Dfer_5034 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; PRIAM: L-aminoadipate-semialdehyde dehydrogenase; SPTR: Aldehyde Dehydrogenase YP_004653626.1 PFAM: Aldehyde dehydrogenase; COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR011611:IPR005834; KEGG: dfe:Dfer_4313 PfkB domain protein; PFAM: Carbohydrate/purine kinase; Haloacid dehalogenase-like hydrolase; SPTR: PfkB domain protein YP_004653627.1 PFAM: pfkB family carbohydrate kinase; haloacid dehalogenase-like hydrolase; TIGRFAM: rfaE bifunctional protein, domain I; COGs: COG3537 alpha-1 2-mannosidase; InterPro IPR005887:IPR012939; KEGG: kol:Kole_0483 alpha-1,2-mannosidase; PFAM: Glycosyl hydrolase 92; SPTR: Alpha-1,2-mannosidase; TIGRFAM: Alpha-1,2-mannosidase YP_004653628.1 PFAM: Glycosyl hydrolase 92; TIGRFAM: alpha-1,2-mannosidase, COGs: COG3394 conserved hypothetical protein; InterPro IPR006879; KEGG: dfe:Dfer_4311 YdjC family protein; PFAM: YdjC-like protein; SPTR: YdjC family protein YP_004653629.1 PFAM: YdjC-like protein; COGs: COG4692 neuraminidase (sialidase); KEGG: shg:Sph21_1902 neuraminidase (sialidase)-like protein; SPTR: Neuraminidase (Sialidase)-like protein YP_004653630.1 PFAM: BNR/Asp-box repeat; KEGG: dfe:Dfer_3113 hypothetical protein; SPTR: uncharacterized protein YP_004653631.1 Prodigal; manually curated YP_004653632.1 KEGG: dfe:Dfer_4310 hypothetical protein; SPTR: uncharacterized protein YP_004653633.1 KEGG: sli:Slin_6607 hypothetical protein; SPTR: uncharacterized protein YP_004653634.1 InterPro IPR011659; KEGG: dfe:Dfer_4309 hypothetical protein; PFAM: WD40-like Beta Propeller; SPTR: uncharacterized protein YP_004653635.1 PFAM: Protein of unknown function (DUF3748); KEGG: sli:Slin_0763 hypothetical protein; SPTR: uncharacterized protein YP_004653636.1 PFAM: Secretory lipase; InterPro IPR007139; KEGG: sli:Slin_5235 hypothetical protein; PFAM: Protein of unknown function DUF349; SPTR: uncharacterized protein YP_004653637.1 PFAM: Domain of Unknown Function (DUF349); COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR003439; KEGG: sli:Slin_5234 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; TIGRFAM: ATP-binding cassette protein, ChvD family YP_004653638.1 PFAM: ABC transporter; TIGRFAM: ATP-binding cassette protein, ChvD family; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_2955 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase YP_004653639.1 PFAM: NAD dependent epimerase/dehydratase; KEGG: sli:Slin_0499 hypothetical protein; SPTR: uncharacterized protein YP_004653640.1 PFAM: OmpA family; COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR002054:IPR003141:IPR004013; KEGG: dfe:Dfer_5653 PHP domain protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal; DNA-directed DNA polymerase, family X; SPTR: PHP domain protein YP_004653641.1 PFAM: PHP domain; KEGG: dfe:Dfer_4377 hypothetical protein; SPTR: uncharacterized protein YP_004653642.1 KEGG: sli:Slin_2831 hypothetical protein; SPTR: uncharacterized protein YP_004653643.1 KEGG: cpi:Cpin_1115 hypothetical protein; SPTR: uncharacterized protein YP_004653644.1 COGs: COG0692 Uracil DNA glycosylase; HAMAP: Uracil-DNA glycosylase; InterPro IPR002043:IPR005122; KEGG: sli:Slin_0246 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase-like; SPTR: Uracil-DNA glycosylase; TIGRFAM: Uracil-DNA glycosylase YP_004653645.1 PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase YP_004653646.1 COGs: COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport; InterPro IPR007474; KEGG: sli:Slin_0247 ApaG domain protein; PFAM: ApaG; SPTR: ApaG domain protein YP_004653647.1 PFAM: Protein of unknown function (DUF525); COGs: COG4122 O-methyltransferase; KEGG: sli:Slin_0248 O-methyltransferase-like protein; SPTR: O-methyltransferase-like protein YP_004653648.1 PFAM: O-methyltransferase; COGs: COG1846 Transcriptional regulators; InterPro IPR000835; KEGG: sli:Slin_6318 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family YP_004653649.1 PFAM: MarR family; COGs: COG0738 Fucose permease; InterPro IPR011701; KEGG: rxy:Rxyl_2098 major facilitator transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004653650.1 PFAM: Major Facilitator Superfamily; COGs: COG0223 Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; InterPro IPR005794:IPR002376:IPR005793; KEGG: dfe:Dfer_4814 methionyl-tRNA formyltransferase; PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; PRIAM: Methionyl-tRNA formyltransferase; SPTR: Methionyl-tRNA formyltransferase; TIGRFAM: Methionyl-tRNA formyltransferase YP_004653651.1 PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase; COGs: COG0782 Transcription elongation factor; HAMAP: Transcription elongation factor greA; InterPro IPR006359:IPR001437; KEGG: dfe:Dfer_4815 transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic; SPTR: Transcription elongation factor greA; TIGRFAM: Prokaryotic transcription elongation factor GreA YP_004653652.1 PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreA YP_004653653.1 COGs: COG0012 GTPase probable translation factor; InterPro IPR004396:IPR002917:IPR013029; KEGG: chu:CHU_2219 GTP-dependent nucleic acid-binding protein EngD; PFAM: Protein of unknown function DUF933; GTP-binding protein, HSR1-related; SPTR: GTP-binding protein; TIGRFAM: Conserved hypothetical protein CHP00092 YP_004653654.1 PFAM: GTPase of unknown function; Protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF; small GTP-binding protein domain; InterPro IPR006628; KEGG: sli:Slin_4280 hypothetical protein; SMART: PUR-alpha/beta/gamma, DNA/RNA-binding; SPTR: uncharacterized protein YP_004653655.1 PFAM: Protein of unknown function (DUF3276); COGs: COG0797 Lipoprotein; InterPro IPR012997:IPR005132; KEGG: dfe:Dfer_4774 rare lipoprotein A; PFAM: Rare lipoprotein A; SPTR: Rare lipoprotein A; TIGRFAM: Rare lipoprotein A, bacterial YP_004653656.1 PFAM: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; TIGRFAM: rare lipoprotein A; COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: sli:Slin_4278 hypothetical protein; PFAM: Protein of unknown function DUF58; SPTR: uncharacterized protein YP_004653657.1 PFAM: Protein of unknown function DUF58; KEGG: psn:Pedsa_2829 hypothetical protein; SPTR: uncharacterized protein YP_004653658.1 COGs: COG4299 conserved hypothetical protein; InterPro IPR019259; KEGG: dfe:Dfer_1233 hypothetical protein; PFAM: Protein of unknown function DUF2261, transmembrane; SPTR: uncharacterized protein YP_004653659.1 PFAM: Protein of unknown function (DUF1624); COGs: COG0366 Glycosidase; InterPro IPR006589:IPR006047; KEGG: dfe:Dfer_2758 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; SPTR: Alpha amylase catalytic region YP_004653660.1 PFAM: Alpha amylase, catalytic domain; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dfe:Dfer_3949 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1 YP_004653661.1 PFAM: Glycosyl transferases group 1; COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; KEGG: sli:Slin_4943 cytochrome c oxidase subunit III; SPTR: Cytochrome c oxidase, subunit III YP_004653662.1 PFAM: Cytochrome c oxidase subunit III; COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; InterPro IPR004424:IPR006204:IPR013750; KEGG: sli:Slin_4944 4-diphosphocytidyl-2C-methyl-D-erythritolkinase; PFAM: GHMP kinase; GHMP kinase, C-terminal; SPTR: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YP_004653663.1 PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140:IPR002912; KEGG: dfe:Dfer_4690 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; Amino acid-binding ACT; SPTR: HAD-superfamily hydrolase, subfamily IB (PSPase-like) YP_004653664.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; ACT domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; InterPro IPR001701; KEGG: lby:Lbys_2672 glycoside hydrolase 9; PFAM: Glycoside hydrolase, family 9; SPTR: uncharacterized protein YP_004653665.1 PFAM: Glycosyl hydrolase 9; N-terminal ig-like domain of cellulase; COGs: COG0420 DNA repair exonuclease; InterPro IPR004593:IPR004843; KEGG: dfe:Dfer_3506 nuclease SbcCD, D subunit; PFAM: Metallophosphoesterase; SPTR: Nuclease SbcCD, D subunit; TIGRFAM: Exonuclease SbcD YP_004653666.1 PFAM: Calcineurin-like phosphoesterase; Type 5 capsule protein repressor C terminal; TIGRFAM: exonuclease SbcD; COGs: COG0419 ATPase involved in DNA repair; InterPro IPR003395; KEGG: dfe:Dfer_3418 SMC domain protein; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: SMC domain protein YP_004653667.1 TIGRFAM: exonuclease SbcC YP_004653668.1 COGs: COG1434 conserved hypothetical protein; InterPro IPR003848; KEGG: dfe:Dfer_3103 protein of unknown function DUF218; PFAM: Protein of unknown function DUF218; SPTR: uncharacterized protein YP_004653669.1 PFAM: DUF218 domain; InterPro IPR000866; KEGG: sli:Slin_4277 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_004653670.1 PFAM: AhpC/TSA family; InterPro IPR000866; KEGG: sli:Slin_4277 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_004653671.1 PFAM: AhpC/TSA family; InterPro IPR003769; KEGG: sli:Slin_1599 ATP-dependent Clp protease adaptor protein ClpS; PFAM: Adaptor protein ClpS, core; SPTR: ATP-dependent Clp protease adaptor protein ClpS YP_004653672.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: sli:Slin_1598 Na+/solute symporter; PFAM: Sodium/solute symporter; SPTR: Na+/solute symporter YP_004653673.1 PFAM: Sodium:solute symporter family; KEGG: rbi:RB2501_03795 hypothetical protein; SPTR: uncharacterized protein YP_004653674.1 InterPro IPR012910; KEGG: sli:Slin_2829 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug YP_004653675.1 PFAM: TonB-dependent Receptor Plug Domain; COGs: COG1434 conserved hypothetical protein; InterPro IPR003848; KEGG: sli:Slin_3912 hypothetical protein; PFAM: Protein of unknown function DUF218; SPTR: uncharacterized protein YP_004653676.1 PFAM: DUF218 domain; COGs: COG2388 acetyltransferase; KEGG: lby:Lbys_1223 gcn5-related N-acetyltransferase; SPTR: Acetyltransferase, GNAT family YP_004653677.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG1741 Pirin-related protein; InterPro IPR003829:IPR008778; KEGG: fjo:Fjoh_3490 pirin domain-containing protein; PFAM: Pirin, N-terminal; Pirin, C-terminal; SPTR: Pirin domain protein YP_004653678.1 PFAM: Pirin C-terminal cupin domain; Pirin; COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933:IPR002860:IPR000421; KEGG: lby:Lbys_2488 coagulation factor 5/8 type domain protein; PFAM: Coagulation factor 5/8 type, C-terminal; Glycoside hydrolase, family 29; BNR repeat; PRIAM: Alpha-L-fucosidase; SMART: Glycoside hydrolase, family 29; SPTR: Coagulation factor 5/8 type domain protein YP_004653679.1 PFAM: F5/8 type C domain; Alpha-L-fucosidase; KEGG: dfe:Dfer_3528 hypothetical protein; SPTR: uncharacterized protein YP_004653680.1 KEGG: dfe:Dfer_3528 hypothetical protein; SPTR: uncharacterized protein YP_004653681.1 KEGG: cmi:CMM_2296 hypothetical protein; SPTR: Predicted protein YP_004653682.1 InterPro IPR018580; KEGG: dfe:Dfer_3101 conserved hypothetical protein, membrane; PFAM: Protein of unknown function, membrane YfhO; SPTR: uncharacterized protein YP_004653683.1 PFAM: Bacterial membrane protein YfhO; KEGG: dfe:Dfer_5102 hypothetical protein; SPTR: uncharacterized protein YP_004653684.1 COGs: COG0205 6-phosphofructokinase; HAMAP: 6-phosphofructokinase; InterPro IPR012828:IPR000023; KEGG: sli:Slin_4275 6-phosphofructokinase; PFAM: Phosphofructokinase; PRIAM: 6-phosphofructokinase; SPTR: 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase YP_004653685.1 PFAM: Phosphofructokinase; TIGRFAM: 6-phosphofructokinase; COGs: COG4772 Outer membrane receptor for Fe3+-dicitrate; InterPro IPR012910:IPR000531; KEGG: sli:Slin_6883 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor YP_004653686.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001:IPR001650:IPR007527:IPR000330; KEGG: sli:Slin_5625 SNF2-related protein; PFAM: SNF2-related; Zinc finger, SWIM-type; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: SNF2-related protein YP_004653687.1 PFAM: SNF2 Helicase; Helicase conserved C-terminal domain; SNF2 family N-terminal domain; SWIM zinc finger; KEGG: pdi:BDI_2149 hypothetical protein; SPTR: uncharacterized protein YP_004653688.1 PFAM: Domain of unknown function DUF87; KEGG: bfr:BF1154 hypothetical protein; SPTR: DNA sulfur modification protein DndD YP_004653689.1 TIGRFAM: DNA sulfur modification protein DndD; KEGG: bfr:BF1155 hypothetical protein; SPTR: uncharacterized protein YP_004653690.1 manually curated YP_004653691.1 PFAM: Nucleotidyltransferase domain; InterPro IPR006935; KEGG: pdi:BDI_2135 hypothetical protein; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; SPTR: uncharacterized protein YP_004653692.1 PFAM: Type III restriction enzyme, res subunit; KEGG: chu:CHU_0701 hypothetical protein; SPTR: uncharacterized protein YP_004653693.1 COGs: COG2189 Adenine specific DNA methylase Mod; InterPro IPR002941; KEGG: bfr:BF1158 methyltransferase; PFAM: DNA methylase N-4/N-6; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Methyltransferase YP_004653694.1 PFAM: DNA methylase; InterPro IPR000595; KEGG: fjo:Fjoh_0475 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding protein YP_004653695.1 PFAM: Cyclic nucleotide-binding domain; InterPro IPR003961:IPR003343:IPR001547; KEGG: pjd:Pjdr2_5278 fibronectin type III domain protein; PFAM: Fibronectin, type III; Glycoside hydrolase, family 5; Bacterial Ig-like, group 2; SMART: Fibronectin, type III; Bacterial Ig-like, group 2; SPTR: Alpha amylase catalytic region YP_004653696.1 PFAM: Cellulase (glycosyl hydrolase 5); Fibronectin type III domain; KEGG: dfe:Dfer_4567 hypothetical protein; SPTR: uncharacterized protein YP_004653697.1 COGs: COG0523 GTPase (G3E family); InterPro IPR003495:IPR011629; KEGG: dfe:Dfer_2212 cobalamin synthesis protein P47K; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SPTR: Cobalamin synthesis protein P47K YP_004653698.1 PFAM: Cobalamin synthesis protein cobW C-terminal domain; CobW/HypB/UreG, nucleotide-binding domain; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: cpi:Cpin_3275 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: Transcriptional regulator, Crp/Fnr family protein YP_004653699.1 PFAM: Cyclic nucleotide-binding domain; KEGG: mtt:Ftrac_2707 cytochrome c class I; SPTR: Cytochrome c class I YP_004653700.1 PFAM: Cytochrome c; COGs: COG4263 Nitrous oxide reductase; InterPro IPR002429; KEGG: dfe:Dfer_0693 nitrous-oxide reductase; PFAM: Cytochrome c oxidase subunit II C-terminal; PRIAM: Nitrous-oxide reductase; SPTR: Nitrous-oxide reductase YP_004653701.1 PFAM: Cytochrome C oxidase subunit II, periplasmic domain; KEGG: dfe:Dfer_0694 hypothetical protein; SPTR: uncharacterized protein YP_004653702.1 PFAM: NosL; COGs: COG3420 Nitrous oxidase accessory protein; InterPro IPR006633:IPR006626:IPR007742; KEGG: dfe:Dfer_0695 periplasmic copper-binding; PFAM: Periplasmic copper-binding; SMART: Carbohydrate-binding/sugar hydrolysis domain; Parallel beta-helix repeat; SPTR: Periplasmic copper-binding; TIGRFAM: parallel beta-helix repeat YP_004653703.1 PFAM: Periplasmic copper-binding protein (NosD); TIGRFAM: parallel beta-helix repeat (two copies); COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_0696 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related YP_004653704.1 PFAM: ABC transporter; KEGG: dfe:Dfer_0697 nitrous-oxide metabolic protein NosY; SPTR: Nitrous-oxide metabolic protein NosY YP_004653705.1 COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: gau:GAU_2687 hypothetical protein; PFAM: FAS1 domain; SMART: FAS1 domain; SPTR: uncharacterized protein YP_004653706.1 PFAM: Fasciclin domain; InterPro IPR013096; KEGG: fbc:FB2170_03785 hypothetical protein; PFAM: Cupin 2, conserved barrel; SPTR: uncharacterized protein YP_004653707.1 PFAM: Cupin domain; KEGG: dfe:Dfer_0096 hypothetical protein; SPTR: uncharacterized protein YP_004653708.1 KEGG: dfe:Dfer_5208 viral A-type inclusion protein; SPTR: Viral A-type inclusion protein YP_004653709.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_4534 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor YP_004653710.1 PFAM: TonB-dependent Receptor Plug Domain; KEGG: sli:Slin_4533 hypothetical protein; SPTR: uncharacterized protein YP_004653711.1 PFAM: BNR/Asp-box repeat; KEGG: lby:Lbys_1453 hypothetical protein; SPTR: uncharacterized protein YP_004653712.1 PFAM: DinB family; KEGG: dfe:Dfer_3660 glycosyltransferase; SPTR: glycosyltransferase YP_004653713.1 PFAM: UDP-glucoronosyl and UDP-glucosyl transferase; TIGRFAM: conserved hypothetical protein; KEGG: dfe:Dfer_5123 hypothetical protein; SPTR: uncharacterized protein YP_004653714.1 COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: cfa:484681 sulfatase modifying factor 1; PFAM: Sulphatase-modifying factor; SPTR: Sulfatase-modifying factor 1 YP_004653715.1 PFAM: Formylglycine-generating sulfatase enzyme; InterPro IPR019882; KEGG: bse:Bsel_0595 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03643 YP_004653716.1 PFAM: Protein of unknown function (DUF2805); TIGRFAM: TIGR03643 family protein; InterPro IPR007362; KEGG: rmr:Rmar_1416 hypothetical protein; SPTR: uncharacterized protein YP_004653717.1 PFAM: Protein of unknown function (DUF429); InterPro IPR017136; KEGG: azl:AZL_a03980 hypothetical protein; PFAM: Uncharacterised conserved protein UCP037205; SPTR: uncharacterized protein; manually curated YP_004653718.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2256); COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692; KEGG: sli:Slin_4469 peptidase S45 penicillin amidase; PFAM: Peptidase S45, penicillin amidase; PRIAM: Glutaryl-7-aminocephalosporanic-acid acylase; SPTR: Peptidase S45 penicillin amidase YP_004653719.1 PFAM: Penicillin amidase; COGs: COG1196 Chromosome segregation ATPase; KEGG: dfe:Dfer_3800 hypothetical protein; SPTR: uncharacterized protein YP_004653720.1 KEGG: sli:Slin_2262 hypothetical protein; SPTR: uncharacterized protein YP_004653721.1 KEGG: sli:Slin_1854 hypothetical protein; SPTR: uncharacterized protein YP_004653722.1 PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family; KEGG: sli:Slin_3077 hypothetical protein; SPTR: uncharacterized protein YP_004653723.1 KEGG: dfe:Dfer_2687 hypothetical protein YP_004653724.1 COGs: COG0297 Glycogen synthase; InterPro IPR013534; KEGG: dfe:Dfer_4558 starch synthase catalytic domain protein; PFAM: Starch synthase catalytic region; PRIAM: Starch synthase; SPTR: Starch synthase catalytic domain protein YP_004653725.1 PFAM: Starch synthase catalytic domain; KEGG: fjo:Fjoh_1685 hypothetical protein; SPTR: Hypothetical lipoprotein YP_004653726.1 COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; HAMAP: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; InterPro IPR005855:IPR000583:IPR001347; KEGG: sli:Slin_4464 glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: Sugar isomerase (SIS); Glutamine amidotransferase, class-II; PRIAM: Glutamine--fructose-6-phosphate transaminase (isomerizing); SPTR: Glucosamine/fructose-6-phosphate aminotransferase, isomerizing; TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising YP_004653727.1 PFAM: SIS domain; Glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing); InterPro IPR006311:IPR013097; KEGG: dfe:Dfer_1578 stress responsive alpha-beta barrel domain protein; PFAM: Stress responsive alpha-beta barrel; SPTR: Stress responsive alpha-beta barrel domain protein YP_004653728.1 PFAM: Stress responsive A/B Barrel Domain; COGs: COG2154 Pterin-4a-carbinolamine dehydratase; InterPro IPR001533; KEGG: sli:Slin_2232 transcriptional coactivator/pterin dehydratase; PFAM: Transcriptional coactivator/pterin dehydratase; SPTR: Transcriptional coactivator/pterin dehydratase YP_004653729.1 PFAM: Pterin 4 alpha carbinolamine dehydratase YP_004653730.1 COGs: COG0712 F0F1-type ATP synthase delta subunit (mitochondrial oligomycin sensitivity protein); HAMAP: ATPase, F1 complex, OSCP/delta subunit; InterPro IPR000711; KEGG: dfe:Dfer_5022 ATP synthase F1, delta subunit; PFAM: ATPase, F1 complex, OSCP/delta subunit; SPTR: ATP synthase subunit delta; TIGRFAM: ATPase, F1 complex, OSCP/delta subunit YP_004653731.1 PFAM: ATP synthase delta (OSCP) subunit; TIGRFAM: ATP synthase, F1 delta subunit; COGs: COG0711 F0F1-type ATP synthase subunit b; HAMAP: ATP synthase subunit b; InterPro IPR005864:IPR002146; KEGG: sli:Slin_3214 ATP synthase F0 subunit beta; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; SPTR: ATP synthase subunit b; TIGRFAM: ATPase, F0 complex, subunit B, bacterial YP_004653732.1 PFAM: ATP synthase B/B' CF(0); TIGRFAM: ATP synthase, F0 subunit b; HAMAP: ATPase, F0 complex, subunit C; InterPro IPR005953:IPR000454:IPR002379; KEGG: lby:Lbys_3611 ATP synthase f0 subcomplex C subunit; PFAM: ATPase, F0/V0 complex, subunit C; SPTR: ATP synthase subunit c; TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast YP_004653733.1 PFAM: ATP synthase subunit C; TIGRFAM: ATP synthase, F0 subunit c; COGs: COG0356 F0F1-type ATP synthase subunit a; HAMAP: ATP synthase subunit a; InterPro IPR000568; KEGG: sli:Slin_3216 ATP synthase F0 subunit alpha; PFAM: ATPase, F0 complex, subunit A; SPTR: ATP synthase subunit a; TIGRFAM: ATPase, F0 complex, subunit A YP_004653734.1 PFAM: ATP synthase A chain; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); KEGG: dfe:Dfer_5026 hypothetical protein; SPTR: uncharacterized protein YP_004653735.1 KEGG: sli:Slin_3218 hypothetical protein; SPTR: uncharacterized protein YP_004653736.1 InterPro IPR013099; KEGG: sli:Slin_0210 K channel inward rectifier conserved region 2 domain protein; PFAM: Ion transport 2; SPTR: K channel inward rectifier conserved region 2 domain protein YP_004653737.1 PFAM: Inward rectifier potassium channel; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_2236 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004653738.1 PFAM: Glycosyl transferase 2; COGs: COG0084 Mg-dependent DNase; InterPro IPR015991:IPR001130; KEGG: dfe:Dfer_5476 hydrolase, TatD family; PFAM: Deoxyribonuclease, TatD-related; SPTR: Hydrolase, TatD family; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote YP_004653739.1 PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family; COGs: COG0252 L-asparaginase/ Glu-tRNAGln amidotransferase subunit D; InterPro IPR006033:IPR006034; KEGG: dfe:Dfer_5475 L-asparaginase, type I; PFAM: Asparaginase/glutaminase; PRIAM: 1-alkyl-2-acetylglycerophosphocholine esterase; SPTR: L-asparaginase, type I; TIGRFAM: L-asparaginase, type I YP_004653740.1 PFAM: Asparaginase; TIGRFAM: L-asparaginases, type I; InterPro IPR019223; KEGG: cpi:Cpin_6391 signal peptide protein; PFAM: Protein of unknown function DUF2147; SPTR: signal peptide protein YP_004653741.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2147); InterPro IPR004993; KEGG: sli:Slin_1664 GH3 auxin-responsive promoter; PFAM: GH3 auxin-responsive promoter; SPTR: GH3 auxin-responsive promoter YP_004653742.1 PFAM: GH3 auxin-responsive promoter; COGs: COG0496 acid phosphatase; HAMAP: Multifunctional protein surE; InterPro IPR002828; KEGG: sli:Slin_1665 stationary-phase survival protein SurE; PFAM: Survival protein SurE-like phosphatase/nucleotidase; SPTR: 5'-nucleotidase surE; TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase YP_004653743.1 PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE; COGs: COG2217 Cation transport ATPase; InterProIPR006403:IPR006416:IPR001757:IPR006121:IPR 008250:IPR005834; KEGG: phe:Phep_3058 copper-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Copper-translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter YP_004653744.1 PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: zpr:ZPR_3369 hypothetical protein; SPTR: Protein containing heavy-metal-associated domain YP_004653745.1 PFAM: Heavy-metal-associated domain; manually curated YP_004653746.1 PFAM: BNR/Asp-box repeat; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sli:Slin_1432 sulfatase; PFAM: Sulfatase; SPTR: Sulfatase YP_004653747.1 PFAM: Sulfatase; COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated YP_004653748.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; COGs: COG1054 sulfurtransferase; HAMAP: UPF0176 protein yceA; InterPro IPR001763; KEGG: dfe:Dfer_0476 hypothetical protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: UPF0176 protein Dfer_0476 YP_004653749.1 PFAM: Rhodanese-like domain; COGs: COG1428 Deoxynucleoside kinase; InterPro IPR002624; KEGG: dfe:Dfer_0477 deoxynucleoside kinase; PFAM: Deoxynucleoside kinase; PRIAM: Deoxyadenosine kinase; SPTR: Deoxynucleoside kinase YP_004653750.1 PFAM: Deoxynucleoside kinase; COGs: COG0208 Ribonucleotide reductase beta subunit; InterPro IPR000358; KEGG: sli:Slin_5045 ribonucleoside-diphosphate reductase; PFAM: Ribonucleotide reductase; PRIAM: Ribonucleoside-diphosphate reductase; SPTR: Ribonucleoside-diphosphate reductase YP_004653751.1 PFAM: Ribonucleotide reductase, small chain; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: ppn:Palpr_1950 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase YP_004653752.1 PFAM: Polysaccharide deacetylase; COGs: COG3616 amino acid aldolase or racemase; InterPro IPR001608; KEGG: dfe:Dfer_1026 alanine racemase domain protein; PFAM: Alanine racemase, N-terminal; SPTR: Alanine racemase domain protein YP_004653753.1 PFAM: Alanine racemase, N-terminal domain; COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: dfe:Dfer_4951 heat shock protein HSP20; PFAM: Heat shock protein Hsp20; SPTR: Heat shock protein Hsp20 YP_004653754.1 PFAM: Hsp20/alpha crystallin family; KEGG: dfe:Dfer_4952 hypothetical protein; SPTR: uncharacterized protein YP_004653756.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_4954 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004653757.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692; KEGG: mtt:Ftrac_0457 acyl-homoserine-lactone acylase; PFAM: Peptidase S45, penicillin amidase; SPTR: Acyl-homoserine-lactone acylase YP_004653758.1 PFAM: Penicillin amidase; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: sli:Slin_5859 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: AMP-dependent synthetase and ligase YP_004653759.1 PFAM: AMP-binding enzyme; COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: dal:Dalk_1296 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase domain protein YP_004653760.1 PFAM: Acyl-CoA dehydrogenase N terminal; Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; COGs: COG0686 Alanine dehydrogenase; InterPro IPR008141:IPR007886:IPR007698; KEGG: sli:Slin_2902 alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal; PRIAM: Alanine dehydrogenase; SPTR: Alanine dehydrogenase; TIGRFAM: Alanine dehydrogenase/pyridine nucleotide transhydrogenase YP_004653761.1 PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase; COGs: COG1522 Transcriptional regulators; InterPro IPR019888:IPR019887; KEGG: dfe:Dfer_0204 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type; SPTR: Transcriptional regulator, AsnC family YP_004653762.1 PFAM: MarR family; AsnC family; COGs: COG1165 2-succinyl-6-hydroxy-2 4-cyclohexadiene-1-carboxylate synthase; HAMAP: Menaquinone biosynthesis protein MenD; InterPro IPR004433:IPR012001; KEGG: sli:Slin_1992 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; PRIAM:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex ene-1-carboxylic-acidsynthase; SPTR:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexe ne-1-carboxylatesynthase; TIGRFAM: Menaquinone biosynthesis protein MenD YP_004653763.1 PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; TIGRFAM: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: aoe:Clos_1084 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11 YP_004653764.1 PFAM: Methyltransferase domain; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: dfe:Dfer_2674 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein YP_004653765.1 PFAM: OmpA family; KEGG: sli:Slin_1179 lipoprotein; SPTR: lipoprotein YP_004653766.1 InterPro IPR013217; KEGG: axy:AXYL_06309 methyltransferase domain-containing protein 11; PFAM: Methyltransferase type 12; SPTR: Methyltransferase domain protein 11 YP_004653767.1 PFAM: Methyltransferase domain; COGs: COG5305 membrane protein; InterPro IPR003342; KEGG: sli:Slin_2543 hypothetical protein; PFAM: Glycosyl transferase, family 39; SPTR: Membrane protein-like protein YP_004653768.1 PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase; KEGG: dfe:Dfer_5126 hypothetical protein; SPTR: uncharacterized protein YP_004653769.1 COGs: COG1398 Fatty-acid desaturase; InterPro IPR005804; KEGG: chu:CHU_1136 fatty acid desaturase; PFAM: Fatty acid desaturase, type 1; SPTR: Fatty acid desaturase YP_004653770.1 PFAM: Fatty acid desaturase; COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; InterPro IPR000672:IPR020630:IPR020631; KEGG: dfe:Dfer_1212 methenyltetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; PRIAM: Methenyltetrahydrofolate cyclohydrolase; SPTR: Bifunctional protein FolD YP_004653771.1 PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; HAMAP: NAD-dependent deacetylase; InterPro IPR003000; KEGG: sli:Slin_2032 silent information regulator protein Sir2; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; SPTR: Silent information regulator protein Sir2 YP_004653772.1 PFAM: Sir2 family YP_004653773.1 COGs: COG0137 Argininosuccinate synthase; InterPro IPR001518; KEGG: dfe:Dfer_4424 argininosuccinate synthase; PFAM: Argininosuccinate synthase; PRIAM: Argininosuccinate synthase; SPTR: Argininosuccinate synthase; TIGRFAM: Argininosuccinate synthase YP_004653774.1 PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase; KEGG: dfe:Dfer_4427 hypothetical protein; SPTR: uncharacterized protein YP_004653775.1 COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR006584:IPR003088:IPR005084; KEGG: sli:Slin_3440 PKD domain containing protein; PFAM: PKD; Cytochrome c, class I; Carbohydrate binding domain, family 6; SMART: PKD; Cellulose binding, type IV; SPTR: PKD domain containing protein YP_004653776.1 PFAM: Cytochrome c; Carbohydrate binding module (family 6); PKD domain; InterPro IPR000866; KEGG: dfe:Dfer_3156 hypothetical protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein YP_004653777.1 InterPro IPR016047; KEGG: sli:Slin_0667 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23 YP_004653778.1 PFAM: Peptidase M23; COGs: COG3386 Gluconolactonase; InterPro IPR013658; KEGG: dfe:Dfer_4886 SMP-30/gluconolaconase/LRE domain protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; SPTR: SMP-30/Gluconolaconase/LRE domain protein YP_004653779.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: sli:Slin_5957 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_004653780.1 PFAM: AhpC/TSA family; KEGG: sli:Slin_0953 hypothetical protein; SPTR: uncharacterized protein YP_004653781.1 KEGG: dfe:Dfer_2825 hypothetical protein; SPTR: uncharacterized protein YP_004653782.1 COGs: COG1983 stress-responsive transcriptional regulator protein; InterPro IPR007168; KEGG: dfe:Dfer_2824 phage shock protein C, PspC; PFAM: PspC; SPTR: Phage shock protein C, PspC YP_004653783.1 PFAM: PspC domain; InterPro IPR000182; KEGG: maq:Maqu_2923 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase YP_004653784.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG0498 Threonine synthase; InterPro IPR004450:IPR001926; KEGG: dfe:Dfer_3806 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Threonine synthase; SPTR: Threonine synthase; TIGRFAM: Threonine synthase YP_004653785.1 PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase YP_004653786.1 PFAM: GlcNAc-PI de-N-acetylase; TIGRFAM: bacillithiol biosynthesis deacetylase BshB1; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR002482:IPR016047:IPR018392; KEGG: sli:Slin_1779 peptidase M23; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Peptidase M23 YP_004653787.1 PFAM: Peptidase M23; LysM domain; COGs: COG0492 Thioredoxin reductase; InterPro IPR005982:IPR013027; KEGG: dfe:Dfer_0086 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Thioredoxin-disulfide reductase; SPTR: Thioredoxin reductase; TIGRFAM: Thioredoxin reductase YP_004653788.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR019734:IPR011659:IPR006665; KEGG: sli:Slin_1781 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SMART: Tetratricopeptide repeat; SPTR: OmpA/MotB domain protein YP_004653789.1 PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG0602 Organic radical activating protein; InterPro IPR007197; KEGG: lby:Lbys_1123 radical sam domain protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein YP_004653790.1 PFAM: Radical SAM superfamily; COGs: COG0176 Transaldolase; InterPro IPR000644:IPR001585; KEGG: sgg:SGGBAA2069_c21100 transaldolase; PFAM: Cystathionine beta-synthase, core; Transaldolase; SMART: Cystathionine beta-synthase, core; SPTR: Transaldolase YP_004653791.1 PFAM: CBS domain; Transaldolase; TIGRFAM: fructose-6-phosphate aldolase, TalC/MipB family; InterPro IPR012480; KEGG: bfs:BF0747 hypothetical protein; PFAM: Heparinase II/III-like; SPTR: uncharacterized protein YP_004653792.1 PFAM: Heparinase II/III-like protein; KEGG: dfe:Dfer_3951 hypothetical protein; SPTR: uncharacterized protein YP_004653793.1 InterPro IPR000923; KEGG: sli:Slin_1172 blue (type 1) copper domain protein; PFAM: Blue (type 1) copper domain; SPTR: Blue (Type 1) copper domain protein YP_004653794.1 PFAM: Copper binding proteins, plastocyanin/azurin family; KEGG: sli:Slin_1171 glucose/sorbosone dehydrogenase; SPTR: Glucose/sorbosone dehydrogenase-like protein YP_004653795.1 COGs: COG2273 Beta-glucanase/Beta-glucan synthetase; InterPro IPR000757; KEGG: sli:Slin_6434 glycoside hydrolase 16; PFAM: Glycoside hydrolase, family 16; PRIAM: Glucan endo-1,3-beta-D-glucosidase; SPTR: Glycoside hydrolase 16 YP_004653796.1 PFAM: Glycosyl hydrolases family 16; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341:IPR013342; KEGG: sli:Slin_1934 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; PRIAM: Chloromuconate cycloisomerase; SPTR: Mandelate racemase/muconate lactonizing protein YP_004653797.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; COGs: COG3367 conserved hypothetical protein; InterPro IPR011669; KEGG: sli:Slin_1935 hypothetical protein; PFAM: Protein of unknown function DUF1611; SPTR: uncharacterized protein YP_004653798.1 PFAM: Protein of unknown function (DUF1611); COGs: COG3653 N-acyl-D-aspartate/D-glutamate deacylase; InterPro IPR001466:IPR006680:IPR012855; KEGG: sli:Slin_1936 beta-lactamase; PFAM: Beta-lactamase-related; Amidohydrolase 1; D-aminoacylase, C-terminal; SPTR: Beta-lactamase YP_004653799.1 PFAM: D-aminoacylase, C-terminal region; Beta-lactamase; Amidohydrolase; COGs: COG1522 Transcriptional regulators; InterPro IPR019888:IPR000835:IPR019887; KEGG: hmg:100207563 hypothetical protein LOC100207563; PFAM: Transcription regulator, AsnC-type, C-terminal; HTH transcriptional regulator, MarR; SMART: Transcription regulator, AsnC-type; SPTR: AsnC family transcriptional regulator YP_004653800.1 PFAM: MarR family; AsnC family; COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: sli:Slin_1771 amidohydrolase; PFAM: Amidohydrolase 1; SPTR: Amidohydrolase YP_004653801.1 PFAM: Amidohydrolase; COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: sli:Slin_1772 amidohydrolase; PFAM: Amidohydrolase 1; SPTR: Amidohydrolase YP_004653802.1 PFAM: Amidohydrolase; KEGG: cph:Cpha266_1734 hypothetical protein; SPTR: uncharacterized protein YP_004653803.1 Prodigal; manually curated YP_004653804.1 PFAM: NmrA-like family; InterPro IPR001647; KEGG: tbd:Tbd_0482 TetR family transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Possible Transcriptional Regulator, TetR family YP_004653805.1 PFAM: Bacterial regulatory proteins, tetR family; COGs: COG2308 conserved hypothetical protein; InterPro IPR007297:IPR007302; KEGG: sli:Slin_0231 hypothetical protein; PFAM: Protein of unknown function DUF404, bacteria N-terminal; Protein of unknown function DUF407; SPTR: uncharacterized protein YP_004653806.1 PFAM: Domain of unknown function (DUF407); Domain of unknown function (DUF404); KEGG: dfe:Dfer_4766 hypothetical protein; SPTR: uncharacterized protein YP_004653807.1 COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: cat:CA2559_05265 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR: Enoyl-CoA hydratase/isomerase YP_004653808.1 PFAM: Enoyl-CoA hydratase/isomerase; COGs: COG3021 conserved hypothetical protein; InterPro IPR005135; KEGG: cyp:PCC8801_0260 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase YP_004653809.1 PFAM: Endonuclease/Exonuclease/phosphatase; COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; InterPro IPR003593:IPR003959; KEGG: sli:Slin_0420 ATPase AAA; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: AAA ATPase central domain protein YP_004653810.1 PFAM: MgsA AAA+ ATPase C terminal; ATPase associated with various cellular activities (AAA); COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_5734 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004653811.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1001 Adenine deaminase; HAMAP: Adenine deaminase; InterPro IPR006679:IPR006680; KEGG: sli:Slin_0418 adenine deaminase; PFAM: Amidohydrolase 1; PRIAM: Adenine deaminase; SPTR: Adenine deaminase; TIGRFAM: Adenine deaminase YP_004653812.1 PFAM: Amidohydrolase; TIGRFAM: adenine deaminase; KEGG: dfe:Dfer_4816 hypothetical protein; SPTR: uncharacterized protein YP_004653813.1 KEGG: rbi:RB2501_01975 membrane associated hydrolase; SPTR: uncharacterized protein YP_004653814.1 Prodigal; manually curated YP_004653815.1 PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; GTP-binding protein LepA C-terminus; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: scl:sce0505 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein YP_004653816.1 PFAM: Protein of unknown function (DUF820); COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR006257:IPR000089:IPR004167:IPR001078; KEGG: dfe:Dfer_5625 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; E3 binding; Biotin/lipoyl attachment; PRIAM: Dihydrolipoyllysine-residue acetyltransferase; SPTR: Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; TIGRFAM: Dihydrolipoamide acetyltransferase, long form YP_004653817.1 PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; COGs: COG5405 ATP-dependent protease HslVU (ClpYQ) peptidase subunit; HAMAP: ATP-dependent protease hslV; InterPro IPR001353; KEGG: sli:Slin_2720 20S proteasome A and subunit betas; PFAM: Proteasome, subunit alpha/beta; SPTR: ATP-dependent protease subunit HslV; TIGRFAM: ATP-dependent protease HslVU, peptidase subunit YP_004653818.1 PFAM: Proteasome subunit; TIGRFAM: ATP-dependent protease HslVU, peptidase subunit; COGs: COG0193 Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; InterPro IPR001328; KEGG: dfe:Dfer_2675 peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; PRIAM: Aminoacyl-tRNA hydrolase; SPTR: Peptidyl-tRNA hydrolase; TIGRFAM: Peptidyl-tRNA hydrolase YP_004653819.1 PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; KEGG: sli:Slin_3162 hypothetical protein; SPTR: uncharacterized protein YP_004653820.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: swp:swp_1670 twin-arginine translocation pathway signal; PFAM: Oxidoreductase, N-terminal; PRIAM: Alpha-N-acetylgalactosaminidase; SPTR: Twin-arginine translocation pathway signal YP_004653821.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; InterPro IPR008671; KEGG: cao:Celal_1771 lycopene beta and epsilon cyclase; PFAM: Lycopene beta/epsilon cyclase; SPTR: Lycopene beta and epsilon cyclase YP_004653822.1 PFAM: Lycopene cyclase; TIGRFAM: lycopene cyclase; KEGG: mtt:Ftrac_2394 beta-carotene 15,15'-monooxygenase, brp/blh family; SPTR: Beta-carotene 15,15'-monooxygenase, Brp/Blh family; TIGRFAM: beta-carotene 15,15'-monooxygenase, Brp/Blh family YP_004653823.1 TIGRFAM: beta-carotene 15,15'-monooxygenase, Brp/Blh family; COGs: COG0143 Methionyl-tRNA synthetase; HAMAP: Methionyl-tRNA synthetase; InterPro IPR002304:IPR004495:IPR015413:IPR002547; KEGG: dfe:Dfer_2956 methionyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding region; PRIAM: Methionine--tRNA ligase; SPTR: Methionyl-tRNA synthetase; TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal YP_004653824.1 PFAM: Anticodon-binding domain; tRNA synthetases class I (M); tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; methionyl-tRNA synthetase YP_004653825.1 InterPro IPR001425; KEGG: sli:Slin_1643 rhodopsin; PFAM: Rhodopsin, bacterial; SPTR: Rhodopsin YP_004653826.1 PFAM: Bacteriorhodopsin-like protein; COGs: COG1106 ATPase; KEGG: sli:Slin_1472 ATPase; SPTR: ATPase-like protein YP_004653827.1 KEGG: sli:Slin_1473 hypothetical protein; SPTR: uncharacterized protein YP_004653828.1 COGs: COG0691 tmRNA-binding protein; HAMAP: SsrA-binding protein; InterPro IPR000037; KEGG: lby:Lbys_2545 SsrA-binding protein; PFAM: SsrA-binding protein; SPTR: SsrA-binding protein; TIGRFAM: SsrA-binding protein YP_004653829.1 PFAM: SmpB protein; TIGRFAM: SsrA-binding protein; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR001375; KEGG: sus:Acid_3737 peptidase S9 prolyl oligopeptidase; SPTR: Acylaminoacyl-peptidase YP_004653830.1 PFAM: Prolyl oligopeptidase; COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: sli:Slin_3590 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase YP_004653831.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: sli:Slin_4876 ABC transporter; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein YP_004653832.1 PFAM: ABC transporter; InterPro IPR014782; KEGG: sli:Slin_4874 hypothetical protein; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; SPTR: uncharacterized protein YP_004653833.1 PFAM: Peptidase M1; Prodigal; manually curated YP_004653834.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: sli:Slin_0240 radical SAM protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein YP_004653835.1 PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: lby:Lbys_2061 short-chain dehydrogenase/reductase sdr; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004653836.1 PFAM: short chain dehydrogenase; COGs: COG0738 Fucose permease; InterPro IPR005275:IPR011701; KEGG: sli:Slin_1494 L-fucose transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: L-fucose transporter; TIGRFAM: L-fucose permease YP_004653837.1 PFAM: Major Facilitator Superfamily; TIGRFAM: L-fucose:H+ symporter permease; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: phe:Phep_0675 cellulase; PFAM: Polysaccharide deacetylase; SPTR: Cellulase YP_004653838.1 PFAM: Polysaccharide deacetylase; COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001:IPR001650:IPR000330; KEGG: dfe:Dfer_0265 non-specific serine/threonine protein kinase; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Snf2 family protein YP_004653839.1 PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain; COGs: COG2114 Adenylate cyclase 3 (some protein contain HAMP domain); InterPro IPR001789:IPR001054; KEGG: dfe:Dfer_1110 adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; Adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: Adenylate/guanylate cyclase YP_004653840.1 PFAM: Adenylate and Guanylate cyclase catalytic domain; Response regulator receiver domain; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: dfe:Dfer_1111 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein YP_004653841.1 PFAM: Response regulator receiver domain; COGs: COG1979 Uncharacterized oxidoreductase Fe-dependent alcohol dehydrogenase; InterPro IPR001670; KEGG: ava:Ava_2489 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type; PRIAM: Alcohol dehydrogenase (NADP(+)); SPTR: Iron-containing alcohol dehydrogenase YP_004653842.1 PFAM: Iron-containing alcohol dehydrogenase; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: mbn:Mboo_0013 HxlR family transcriptional regulator; PFAM: Helix-turn-helix, HxlR type; SPTR: Transcriptional regulator, MarR family YP_004653843.1 PFAM: HxlR-like helix-turn-helix; COGs: COG1846 Transcriptional regulators; InterPro IPR000835; KEGG: bvu:BVU_0014 transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator YP_004653844.1 PFAM: MarR family YP_004653845.1 Prodigal; manually curated YP_004653846.1 PFAM: Pirin; COGs: COG0693 intracellular protease/amidase; InterPro IPR002818; KEGG: ana:alr8073 hypothetical protein; PFAM: ThiJ/PfpI; SPTR: ThiJ/PfpI family protein YP_004653847.1 PFAM: DJ-1/PfpI family; KEGG: mtt:Ftrac_3234 hypothetical protein; SPTR: uncharacterized protein YP_004653848.1 COGs: COG3324 protein related to lactoylglutathione lyase; KEGG: acp:A2cp1_4043 glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004653849.1 KEGG: dfe:Dfer_0266 hypothetical protein; SPTR: uncharacterized protein YP_004653850.1 PFAM: Protein of unknown function, DUF481; COGs: COG3781 membrane protein; InterPro IPR007913; KEGG: chu:CHU_1817 hypothetical protein; SPTR: Conserved effector locus protein YP_004653851.1 PFAM: Bestrophin; COGs: COG3548 integral membrane protein; InterPro IPR010617; KEGG: psn:Pedsa_2090 protein of unknown function DUF1211; PFAM: Protein of unknown function DUF1211; SPTR: uncharacterized protein YP_004653852.1 PFAM: Protein of unknown function (DUF1211); COGs: COG2085 dinucleotide-binding protein; InterPro IPR004455; KEGG: sus:Acid_3142 NADP oxidoreductase, coenzyme F420-dependent; PFAM: NADP oxidoreductase, coenzyme F420-dependent; SPTR: NADP oxidoreductase coenzyme f420-dependent superfamily YP_004653853.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: sli:Slin_5025 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family YP_004653854.1 PFAM: Cyclic nucleotide-binding domain; COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR003661:IPR003594; KEGG: dfe:Dfer_1112 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase YP_004653855.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR019734:IPR003661:IPR003594:IPR001440; KEGG: sli:Slin_3715 histidine kinase; PFAM: ATP-binding region, ATPase-like; Tetratricopeptide TPR-1; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Tetratricopeptide repeat; SPTR: Histidine kinase YP_004653856.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR003661:IPR003594; KEGG: sli:Slin_2864 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase YP_004653857.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR003661:IPR003594; KEGG: sli:Slin_2864 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase YP_004653858.1 PFAM: 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; KEGG: gfo:GFO_3525 hypothetical protein; SPTR: uncharacterized protein YP_004653859.1 Prodigal; This gene is disrupted by complex chromosomal rearrangement; manually curated YP_004653860.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR001375; KEGG: sli:Slin_5023 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein YP_004653861.1 PFAM: Prolyl oligopeptidase; COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR000524:IPR004839; KEGG: dfe:Dfer_1191 transcriptional regulator, GntR family with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/II; SMART: HTH transcriptional regulator, GntR; SPTR: Transcriptional regulator, GntR family with aminotransferase domain YP_004653862.1 PFAM: Aminotransferase class I and II; Bacterial regulatory proteins, gntR family; COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR010168:IPR002933:IPR011650; KEGG: rbi:RB2501_12622 hypothetical protein; PFAM: Peptidase M20, dimerisation; Peptidase M20; SPTR: uncharacterized protein; TIGRFAM: Peptidase M20D, amidohydrolase YP_004653863.1 PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase; COGs: COG3467 flavin-nucleotide-binding protein; KEGG: dfe:Dfer_1192 hypothetical protein; SPTR: uncharacterized protein YP_004653864.1 KEGG: dfe:Dfer_0026 hypothetical protein; SPTR: uncharacterized protein YP_004653865.1 InterPro IPR013096; KEGG: bcj:BCAM0980 hypothetical protein; PFAM: Cupin 2, conserved barrel; SPTR: uncharacterized protein YP_004653866.1 PFAM: Cupin domain; COGs: COG0325 enzyme with a TIM-barrel fold; InterPro IPR011078:IPR001608; KEGG: dfe:Dfer_2011 alanine racemase domain protein; PFAM: Alanine racemase, N-terminal; SPTR: Alanine racemase domain protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type YP_004653867.1 PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family; COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692; KEGG: npu:Npun_R3418 peptidase S45, penicillin amidase; PFAM: Peptidase S45, penicillin amidase; PRIAM: Glutaryl-7-aminocephalosporanic-acid acylase; SPTR: Penicillin amidase superfamily YP_004653868.1 PFAM: Penicillin amidase YP_004653869.1 KEGG: dfe:Dfer_2225 hypothetical protein; SPTR: uncharacterized protein YP_004653870.1 PFAM: Beta-propeller repeat; InterPro IPR001087; KEGG: sli:Slin_4778 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family YP_004653871.1 PFAM: GDSL-like Lipase/Acylhydrolase; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR013428:IPR013427; KEGG: sli:Slin_4779 dehydrogenase; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; haem-binding region YP_004653872.1 PFAM: Cytochrome c; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: fjo:Fjoh_4841 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein YP_004653873.1 PFAM: Response regulator receiver domain; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1620 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor YP_004653874.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_1619 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein YP_004653875.1 PFAM: SusD family; KEGG: sli:Slin_2732 hypothetical protein; SPTR: uncharacterized protein YP_004653876.1 KEGG: sli:Slin_2733 hypothetical protein; SPTR: uncharacterized protein YP_004653878.1 InterPro IPR003088; KEGG: sli:Slin_2734 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I YP_004653879.1 PFAM: Cytochrome c; COGs: COG2041 Sulfite oxidase; InterPro IPR006311:IPR000572:IPR005066; KEGG: sli:Slin_2735 oxidoreductase molybdopterin binding protein; PFAM: Oxidoreductase, molybdopterin binding; Moybdenum cofactor oxidoreductase, dimerisation; PRIAM: Nitrate reductase (NADH); SPTR: Oxidoreductase molybdopterin binding protein YP_004653880.1 PFAM: Mo-co oxidoreductase dimerisation domain; Oxidoreductase molybdopterin binding domain; InterPro IPR008775; KEGG: sli:Slin_2447 phytanoyl-CoA dioxygenase; PFAM: Phytanoyl-CoA dioxygenase; SPTR: Phytanoyl-CoA dioxygenase YP_004653881.1 PFAM: Phytanoyl-CoA dioxygenase (PhyH); COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: sli:Slin_2448 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR YP_004653882.1 PFAM: short chain dehydrogenase; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1518 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor YP_004653883.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; KEGG: fjo:Fjoh_4619 hypothetical protein; SPTR: uncharacterized protein YP_004653884.1 PFAM: Domain of unknown function (DUF3291); COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR006055:IPR013520:IPR001357; KEGG: cle:Clole_0717 exonuclease RNase T and DNA polymerase III; PFAM: Exonuclease, RNase T/DNA polymerase III; BRCT; SMART: Exonuclease; SPTR: Exonuclease RNase T and DNA polymerase III YP_004653885.1 PFAM: Exonuclease; BRCA1 C Terminus (BRCT) domain; InterPro IPR007829; KEGG: cni:Calni_1848 hypothetical protein; SPTR: Predicted protein YP_004653886.1 PFAM: TM2 domain YP_004653887.1 KEGG: dfe:Dfer_1189 hypothetical protein; SPTR: uncharacterized protein YP_004653895.1 SPTR: uncharacterized protein YP_004653902.1 SPTR: uncharacterized protein YP_004653903.1 COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR002142; KEGG: bra:BRADO3628 hypothetical protein; PFAM: Peptidase S49; SPTR: Signal peptide peptidase SppA, 36K type YP_004653904.1 PFAM: Peptidase S49; TIGRFAM: signal peptide peptidase SppA, 36K type; KEGG: bbo:BBOV_II002880 85 kDa protein; SPTR: Bv80/Bb-1 YP_004653911.1 KEGG: adn:Alide_3560 ParB domain protein nuclease; SPTR: ParB domain protein nuclease YP_004653912.1 KEGG: bvu:BVU_2841 hypothetical protein; SPTR: uncharacterized protein YP_004653913.1 KEGG: fjo:Fjoh_3588 hypothetical protein; SPTR: uncharacterized protein YP_004653915.1 InterPro IPR003356; KEGG: bvu:BVU_1577 type I restriction enzyme, M subunit; PFAM: DNA methylase, adenine-specific; SPTR: Type I restriction enzyme, M subunit YP_004653916.1 PFAM: N-6 DNA Methylase YP_004653918.1 InterPro IPR014944; PFAM: Protein of unknown function DUF1813, HSP20-like YP_004653919.1 PFAM: HSP20-like domain of unknown function (DUF1813); COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; KEGG: efa:EF2258 hypothetical protein; SPTR: uncharacterized protein YP_004653920.1 PFAM: MgsA AAA+ ATPase C terminal YP_004653922.1 KEGG: osp:Odosp_2613 hypothetical protein; SPTR: uncharacterized protein YP_004653923.1 PFAM: Terminase-like family YP_004653924.1 KEGG: osp:Odosp_2618 hypothetical protein; SPTR: uncharacterized protein YP_004653926.1 KEGG: shg:Sph21_3470 hypothetical protein YP_004653934.1 KEGG: mel:Metbo_1109 hypothetical protein; SPTR: uncharacterized protein YP_004653938.1 KEGG: wvi:Weevi_0252 hypothetical protein; SPTR: uncharacterized protein YP_004653943.1 InterPro IPR002104; KEGG: sli:Slin_6168 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Integrase YP_004653944.1 PFAM: Phage integrase YP_004653945.1 PFAM: Amidase; KEGG: cpi:Cpin_0774 hypothetical protein; SPTR: uncharacterized protein YP_004653946.1 PFAM: Protein of unknown function (DUF3050); InterPro IPR007492; KEGG: phe:Phep_1585 LytTr DNA-binding subunit; PFAM: LytTr DNA-binding region; SPTR: Response regulator YP_004653947.1 PFAM: LytTr DNA-binding domain; InterPro IPR000834; KEGG: sli:Slin_0971 hypothetical protein; PFAM: Peptidase M14, carboxypeptidase A; SPTR: uncharacterized protein YP_004653948.1 PFAM: Zinc carboxypeptidase YP_004653949.1 SPTR: uncharacterized protein YP_004653950.1 COGs: COG1373 ATPase (AAA+ superfamily); KEGG: mtt:Ftrac_2734 hypothetical protein; SPTR: uncharacterized protein YP_004653952.1 InterPro IPR000834; KEGG: sli:Slin_3266 hypothetical protein; PFAM: Peptidase M14, carboxypeptidase A; SPTR: uncharacterized protein YP_004653953.1 PFAM: Zinc carboxypeptidase; COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151:IPR011659; KEGG: sli:Slin_5713 peptidase S41; PFAM: Peptidase S41; WD40-like Beta Propeller; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: Tricorn-like protease YP_004653954.1 PFAM: WD40-like Beta Propeller Repeat; Peptidase S41; KEGG: dfe:Dfer_2989 hypothetical protein; SPTR: uncharacterized protein YP_004653955.1 KEGG: sli:Slin_5579 hypothetical protein; SPTR: uncharacterized protein YP_004653956.1 COGs: COG0274 Deoxyribose-phosphate aldolase; HAMAP: Deoxyribose-phosphate aldolase; InterPro IPR011343:IPR002915; KEGG: afv:AFLA_123760 deoxyribose-phosphate aldolase; PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PRIAM: Deoxyribose-phosphate aldolase; SPTR: Predicted protein; TIGRFAM: Deoxyribose-phosphate aldolase YP_004653957.1 PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase; InterPro IPR019734:IPR001440; KEGG: sli:Slin_0369 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein YP_004653958.1 PFAM: Tetratricopeptide repeat; KEGG: sli:Slin_3278 hypothetical protein; SPTR: uncharacterized protein YP_004653959.1 COGs: COG1577 Mevalonate kinase; InterPro IPR006204:IPR013750; KEGG: sli:Slin_4183 GHMP kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal; SPTR: GHMP kinase YP_004653960.1 PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; InterPro IPR006260:IPR008756:IPR003538:IPR012910; KEGG: sli:Slin_6188 TonB family protein; PFAM: Gram-negative bacterial tonB protein; Peptidase M56, BlaR1; TonB-dependent receptor, plug; SPTR: TonB family protein; TIGRFAM: TonB, C-terminal YP_004653961.1 PFAM: BlaR1 peptidase M56; TonB-dependent Receptor Plug Domain; Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: sli:Slin_6189 CopY family transcriptional regulator; PFAM: Penicillinase repressor; SPTR: Transcriptional repressor, CopY family YP_004653962.1 PFAM: Penicillinase repressor; COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006056:IPR006175; KEGG: thx:Thet_1042 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP; TIGRFAM: YjgF-like protein YP_004653963.1 PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, COGs: COG3255 sterol carrier protein; InterPro IPR003033; KEGG: dfe:Dfer_4726 sterol-binding domain protein; PFAM: Sterol-binding; SPTR: Sterol-binding domain protein YP_004653964.1 PFAM: SCP-2 sterol transfer family; KEGG: dfe:Dfer_3257 hypothetical protein; SPTR: uncharacterized protein YP_004653965.1 PFAM: Histone H1-like protein Hc1; KEGG: sli:Slin_1746 hypothetical protein; SPTR: uncharacterized protein YP_004653966.1 COGs: COG2315 conserved hypothetical protein; InterPro IPR007351; KEGG: chu:CHU_2412 hypothetical protein; SPTR: uncharacterized protein YP_004653967.1 PFAM: Protein of unknown function (DUF419); KEGG: dfe:Dfer_0460 hypothetical protein; SPTR: uncharacterized protein YP_004653968.1 COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; InterPro IPR004588; KEGG: sli:Slin_1366 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; SPTR: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type YP_004653969.1 PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; COGs: COG1169 Isochorismate synthase; InterPro IPR015890; KEGG: sli:Slin_0770 chorismate binding-like protein; PFAM: Chorismate binding, C-terminal; SPTR: Chorismate binding-like protein YP_004653970.1 PFAM: chorismate binding enzyme; TIGRFAM: isochorismate synthases; KEGG: phe:Phep_2153 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004653971.1 COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: sli:Slin_1096 fatty acid hydroxylase; PFAM: Fatty acid hydroxylase; SPTR: sterol desaturase-related protein YP_004653972.1 PFAM: Fatty acid hydroxylase superfamily; COGs: COG0192 S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthase; InterPro IPR002133; KEGG: lby:Lbys_1573 methionine adenosyltransferase; PFAM: S-adenosylmethionine synthetase; PRIAM: Methionine adenosyltransferase; SPTR: S-adenosylmethionine synthase; TIGRFAM: S-adenosylmethionine synthetase YP_004653973.1 PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, N-terminal domain; S-adenosylmethionine synthetase, central domain; TIGRFAM: S-adenosylmethionine synthetase; COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR004652:IPR001269; KEGG: sli:Slin_2392 hypothetical protein; PFAM: tRNA-dihydrouridine synthase; SPTR: tRNA-dihydrouridine synthase; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3 YP_004653974.1 PFAM: Dihydrouridine synthase (Dus); TIGRFAM: TIM-barrel protein, nifR3 family; KEGG: sli:Slin_5357 hypothetical protein; SPTR: uncharacterized protein YP_004653975.1 KEGG: lby:Lbys_3070 hypothetical protein; SPTR: uncharacterized protein YP_004653976.1 PFAM: Protein of unknown function (DUF2891); KEGG: zpr:ZPR_1895 hypothetical protein; SPTR: uncharacterized protein YP_004653977.1 KEGG: sli:Slin_6414 hypothetical protein; SPTR: uncharacterized protein YP_004653978.1 PFAM: Uncharacterised protein family UPF0560 YP_004653979.1 KEGG: dfe:Dfer_3783 hypothetical protein; SPTR: uncharacterized protein YP_004653980.1 COGs: COG2942 N-acyl-D-glucosamine 2-epimerase; InterPro IPR010819; KEGG: bth:BT_0453 N-acylglucosamine 2-epimerase; PFAM: N-acylglucosamine 2-epimerase; SPTR: N-acylglucosamine 2-epimerase YP_004653981.1 PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); Prodigal; This gene is disrupted by insertion of repetitive element; manually curated YP_004653982.1 PFAM: Prolyl oligopeptidase; COGs: COG2195 Di- and tripeptidase; InterPro IPR002933:IPR011650; KEGG: sli:Slin_3913 peptidase M20; PFAM: Peptidase M20; Peptidase M20, dimerisation; SPTR: Peptidase M20 YP_004653983.1 PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; COGs: COG3342 conserved hypothetical protein; InterPro IPR010430; KEGG: gfo:GFO_3451 secreted protein containing DUF1028; PFAM: Protein of unknown function DUF1028; SPTR: Secreted protein containing DUF1028 YP_004653984.1 PFAM: Family of unknown function (DUF1028); COGs: COG5010 Flp pilus assembly protein TadD contains TPR repeats; InterProIPR019734:IPR003107:IPR011600:IPR001440:IPR 013105; KEGG: cyp:PCC8801_1300 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR2; Peptidase C14, caspase catalytic; Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein YP_004653985.1 PFAM: Caspase domain; Tetratricopeptide repeat; KEGG: dfe:Dfer_0575 peptidase C14 caspase catalytic subunit P20; SPTR: uncharacterized protein YP_004653986.1 InterPro IPR000668; KEGG: sli:Slin_6485 peptidase C1A papain; PFAM: Peptidase C1A, papain C-terminal; SMART: Peptidase C1A, papain C-terminal; SPTR: Cysteine protease YP_004653987.1 PFAM: Papain family cysteine protease YP_004653988.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR019734:IPR003661:IPR003594:IPR001440; KEGG: sli:Slin_3715 histidine kinase; PFAM: ATP-binding region, ATPase-like; Tetratricopeptide TPR-1; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Tetratricopeptide repeat; SPTR: Histidine kinase YP_004653989.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Tetratricopeptide repeat; COGs: COG0527 Aspartokinase; InterProIPR001341:IPR001048:IPR002912:IPR005106:IPR 001342; KEGG: dfe:Dfer_3152 bifunctional aspartokinase I/homeserine dehydrogenase I; PFAM: Homoserine dehydrogenase, catalytic; Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT; Aspartate/homoserine dehydrogenase, NAD-binding; PRIAM: Aspartate kinase., Homoserine dehydrogenase; SPTR: Aspartate kinase; TIGRFAM: Aspartate kinase region YP_004653990.1 PFAM: Homoserine dehydrogenase; Homoserine dehydrogenase, NAD binding domain; Amino acid kinase; ACT domain; TIGRFAM: aspartate kinase, monofunctional class; aspartate kinase; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076; KEGG: dfe:Dfer_4714 glucose-methanol-choline oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase YP_004653991.1 PFAM: GMC oxidoreductase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: sli:Slin_5717 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase YP_004653992.1 PFAM: NAD dependent epimerase/dehydratase YP_004653993.1 InterPro IPR010496; KEGG: fbc:FB2170_11601 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein YP_004653994.1 PFAM: Domain of Unknown Function (DUF1080); InterPro IPR011483; KEGG: dfe:Dfer_2125 protein of unknown function DUF1593; PFAM: Protein of unknown function DUF1593; SPTR: uncharacterized protein YP_004653995.1 PFAM: Protein of unknown function (DUF1593); COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076; KEGG: dfe:Dfer_4714 glucose-methanol-choline oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase YP_004653996.1 PFAM: GMC oxidoreductase; KEGG: sli:Slin_1890 hypothetical protein; SPTR: uncharacterized protein YP_004653997.1 COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: sli:Slin_1481 LacI family transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family YP_004653998.1 PFAM: Bacterial regulatory proteins, lacI family; family; InterPro IPR010905; KEGG: sli:Slin_1019 glycosyl hydrolase 88; PFAM: Glycosyl hydrolase, family 88; SPTR: Glycosyl hydrolase 88 YP_004653999.1 PFAM: Glycosyl Hydrolase 88; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_1567 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004654000.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: dfe:Dfer_4707 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR YP_004654001.1 PFAM: FecR protein; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR011662:IPR012910:IPR000531; KEGG: sli:Slin_2454 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004654002.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: sli:Slin_2453 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein YP_004654003.1 PFAM: SusD family YP_004654004.1 InterPro IPR010496; KEGG: fbc:FB2170_06090 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein YP_004654005.1 PFAM: Domain of Unknown Function (DUF1080); KEGG: bcv:Bcav_3390 coagulation factor 5/8 type domain protein; SPTR: uncharacterized protein YP_004654006.1 PFAM: Heparinase II/III-like protein; COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR001078; KEGG: lby:Lbys_3077 catalytic domaiN-containing protein of components of various dehydrogenase complexes; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; SPTR: Catalytic domain-containing protein of components of various dehydrogenase complexes YP_004654007.1 PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YP_004654008.1 InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1683 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004654009.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_1684 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein YP_004654010.1 PFAM: SusD family; Prodigal; This gene is disrupted by complex chromosomal rearrangement; manually curated YP_004654011.1 Prodigal; manually curated YP_004654012.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; KEGG: sli:Slin_2455 heparinase II/III family protein; SPTR: Heparinase II/III family protein YP_004654013.1 PFAM: Heparinase II/III-like protein; KEGG: rba:RB940 hypothetical protein; SPTR: uncharacterized protein YP_004654014.1 KEGG: sli:Slin_2511 YHS domain protein; SPTR: YHS domain protein YP_004654015.1 KEGG: sli:Slin_0582 hypothetical protein; SPTR: uncharacterized protein YP_004654016.1 InterPro IPR010870; KEGG: dfe:Dfer_1082 phosphate-selective porin O and P; PFAM: Phosphate-selective porin O/P; SPTR: Phosphate-selective porin O and P YP_004654017.1 PFAM: Phosphate-selective porin O and P; COGs: COG0446 NAD(FAD)-dependent dehydrogenase; InterPro IPR013027; KEGG: reu:Reut_A1474 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Ferredoxin--NAD(+) reductase; SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004654018.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG0633 Ferredoxin; InterPro IPR001041; KEGG: azo:azo2528 ferrodoxin; PFAM: Ferredoxin; SPTR: Probable ferrodoxin YP_004654019.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: bbt:BBta_1600 3-oxoacyl-(acyl-carrier protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: 3-oxoacyl-(Acyl-carrier protein) reductase YP_004654020.1 PFAM: short chain dehydrogenase; InterPro IPR006674; KEGG: bbt:BBta_1601 hypothetical protein; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SPTR: uncharacterized protein YP_004654021.1 PFAM: HD domain; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: bbt:BBta_1602 succinate-semialdehyde dehydrogenase I (NADP+) (SSDH); PFAM: Aldehyde dehydrogenase; PRIAM: Betaine-aldehyde dehydrogenase; SPTR: succinate-semialdehyde dehydrogenase I (NADP+) (SSDH) YP_004654022.1 PFAM: Aldehyde dehydrogenase; InterPro IPR006674; KEGG: bbt:BBta_1603 hypothetical protein; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SPTR: uncharacterized protein YP_004654023.1 PFAM: HD domain; COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterPro IPR008279; KEGG: bbt:BBta_1604 hypothetical protein; PFAM: PEP-utilising enzyme, mobile region; SPTR: Phosphoenolpyruvate synthase YP_004654024.1 PFAM: PEP-utilising enzyme, mobile domain; COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterPro IPR002192; KEGG: bbt:BBta_1605 phosphoenolpyruvate synthase (pyruvate, water dikinase) (PEP synthase); PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PRIAM: Pyruvate, water dikinase; SPTR: phosphoenolpyruvate synthase (Pyruvate, water dikinase) (PEP synthase) YP_004654025.1 PFAM: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: phosphoenolpyruvate synthase; COGs: COG2124 Cytochrome P450; InterPro IPR001128; KEGG: bbt:BBta_1606 cytochrome P450; PFAM: Cytochrome P450; PRIAM: Linalool 8-monooxygenase; SPTR: cytochrome P450 YP_004654026.1 PFAM: Cytochrome P450; COGs: COG3947 Response regulator containing CheY-like receiver and SARP domains; InterPro IPR019734:IPR001440; KEGG: bbt:BBta_1607 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: uncharacterized protein YP_004654027.1 PFAM: Bacterial transcriptional activator domain; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910; KEGG: dfe:Dfer_1455 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug YP_004654028.1 PFAM: TonB-dependent Receptor Plug Domain; InterPro IPR013737:IPR008902; KEGG: rbi:RB2501_00941 rhamnosidase; PFAM: Bacterial alpha-L-rhamnosidase; Bacterial alpha-L-rhamnosidase N-terminal; SPTR: rhamnosidase YP_004654029.1 PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain; manually curated YP_004654030.1 PFAM: Calcineurin-like phosphoesterase; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR006311:IPR008274; KEGG: sli:Slin_1104 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein YP_004654031.1 PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; InterPro IPR001041:IPR002888; KEGG: sli:Slin_1103 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; Ferredoxin; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: (2Fe-2S)-binding domain protein YP_004654032.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain; SPTR: uncharacterized protein YP_004654033.1 manually curated YP_004654034.1 KEGG: sli:Slin_2632 hypothetical protein; SPTR: uncharacterized protein YP_004654035.1 InterPro IPR000086; KEGG: dfe:Dfer_2189 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase YP_004654036.1 PFAM: NUDIX domain; COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: rfr:Rfer_2445 aldo/keto reductase; PFAM: Aldo/keto reductase; PRIAM: Pyridoxine 4-dehydrogenase; SPTR: Pyridoxine 4-dehydrogenase YP_004654037.1 PFAM: Aldo/keto reductase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: cts:Ctha_0791 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004654038.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; Prodigal; manually curated YP_004654039.1 PFAM: Protein of unknown function (DUF2911); InterPro IPR000421:IPR006104; KEGG: dfe:Dfer_1521 glycoside hydrolase 2 sugar binding; PFAM: Coagulation factor 5/8 type, C-terminal; Glycoside hydrolase 2, carbohydrate-binding; SPTR: Glycoside hydrolase 2 sugar binding YP_004654040.1 PFAM: Glycosyl hydrolases family 2, sugar binding domain; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: dfe:Dfer_3436 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004654041.1 PFAM: Xylose isomerase-like TIM barrel; InterPro IPR013097; KEGG: rle:RL2214 hypothetical protein; PFAM: Stress responsive alpha-beta barrel; SPTR: uncharacterized protein YP_004654042.1 PFAM: Stress responsive A/B Barrel Domain; InterPro IPR013737:IPR008902; KEGG: lby:Lbys_2344 alpha-L-rhamnosidase; PFAM: Bacterial alpha-L-rhamnosidase; Bacterial alpha-L-rhamnosidase N-terminal; SPTR: Alpha-L-rhamnosidase YP_004654043.1 PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain; SPTR: Transposase IS4 family protein YP_004654045.1 COGs: COG0657 Esterase/lipase; InterPro IPR013094; KEGG: rbi:RB2501_00881 lipase/esterase; SPTR: Probable lipase/esterase YP_004654046.1 PFAM: alpha/beta hydrolase fold; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: pst:PSPTO_3052 major facilitator family transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004654047.1 PFAM: Major Facilitator Superfamily; COGs: COG2382 Enterochelin esterase; InterPro IPR004193:IPR000801; KEGG: sli:Slin_1256 esterase; PFAM: esterase; Glycoside hydrolase, family 13, N-terminal; SPTR: esterase YP_004654048.1 PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); esterase; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: sli:Slin_1327 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein YP_004654049.1 PFAM: Protein of unknown function (DUF820); COGs: COG1878 metal-dependent hydrolase; InterPro IPR007325; KEGG: sli:Slin_1543 cyclase; PFAM: cyclase; SPTR: Cyclase YP_004654050.1 PFAM: cyclase; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: sli:Slin_0741 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein YP_004654051.1 PFAM: Protein of unknown function (DUF820); manually curated YP_004654052.1 PFAM: Fumarylacetoacetate (FAA) hydrolase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: mrb:Mrub_2546 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004654053.1 PFAM: short chain dehydrogenase; COGs: COG0141 Histidinol dehydrogenase; HAMAP: Histidinol dehydrogenase, prokaryotic-type; InterPro IPR012131; KEGG: ara:Arad_12308 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase, prokaryotic-type; PRIAM: Histidinol dehydrogenase; SPTR: Histidinol dehydrogenase; TIGRFAM: Histidinol dehydrogenase, prokaryotic-type YP_004654054.1 PFAM: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; COGs: COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; InterPro IPR002938; KEGG: nar:Saro_3428 monooxygenase, FAD-binding; PFAM: Monooxygenase, FAD-binding; SPTR: Monooxygenase, FAD-binding YP_004654055.1 PFAM: FAD binding domain; SPTR: uncharacterized protein YP_004654056.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR010520; KEGG: sli:Slin_1547 hypothetical protein; SPTR: uncharacterized protein YP_004654057.1 PFAM: Alpha/beta hydrolase of unknown function (DUF1100); InterPro IPR004360; KEGG: sli:Slin_1548 catechol 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; PRIAM: Biphenyl-2,3-diol 1,2-dioxygenase; SPTR: Catechol 2,3-dioxygenase YP_004654058.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG0684 Demethylmenaquinone methyltransferase; KEGG: shg:Sph21_2770 demethylmenaquinone methyltransferase-like protein; SPTR: uncharacterized protein YP_004654059.1 PFAM: Demethylmenaquinone methyltransferase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: sli:Slin_1550 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004654060.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: zpr:ZPR_1603 esterase/lipase-like protein; PFAM: Lipase, GDSL; SPTR: Esterase/lipase-like protein YP_004654061.1 PFAM: GDSL-like Lipase/Acylhydrolase; Dienelactone hydrolase; COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: sli:Slin_2686 LacI family transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family YP_004654062.1 PFAM: Bacterial regulatory proteins, lacI family; family; COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764:IPR002772; KEGG: sli:Slin_2687 glycoside hydrolase; PFAM: Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal; PRIAM: Xylan 1,4-beta-xylosidase; SPTR: Glycoside hydrolase 3 domain protein YP_004654063.1 PFAM: Glycosyl hydrolase 3 C terminal domain; Glycosyl hydrolase 3 N terminal domain; KEGG: sli:Slin_4148 hypothetical protein; SPTR: uncharacterized protein YP_004654064.1 InterPro IPR010839; KEGG: sli:Slin_4147 hypothetical protein; PFAM: Protein of unknown function DUF1446; SPTR: uncharacterized protein YP_004654065.1 PFAM: Protein of unknown function (DUF1446); KEGG: sli:Slin_4519 hypothetical protein; SPTR: uncharacterized protein YP_004654066.1 COGs: COG2851 H+/citrate symporter; InterPro IPR014738:IPR004680; KEGG: sli:Slin_4146 citrate/H+ symporter, CitMHS family; PFAM: Divalent ion symporter; SPTR: Citrate/H+ symporter, CitMHS family; TIGRFAM: Citrate transporter YP_004654067.1 PFAM: Citrate transporter; TIGRFAM: citrate transporter, CitMHS family; COGs: COG2272 Carboxylesterase type B; InterPro IPR002018; KEGG: sli:Slin_4145 carboxylesterase; PFAM: Carboxylesterase, type B; SPTR: Carboxylesterase YP_004654068.1 PFAM: Carboxylesterase; COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: lby:Lbys_0275 esterase; PFAM: esterase; SPTR: Esterase YP_004654069.1 PFAM: esterase; InterPro IPR006311:IPR012307; KEGG: dfe:Dfer_0286 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004654070.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG2272 Carboxylesterase type B; InterPro IPR002018; KEGG: rbi:RB2501_13134 esterase; PFAM: Carboxylesterase, type B; SPTR: esterase YP_004654071.1 PFAM: Carboxylesterase; COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: sli:Slin_0652 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: uncharacterized protein YP_004654072.1 PFAM: NUDIX domain; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: cpi:Cpin_4312 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase YP_004654073.1 PFAM: NAD dependent epimerase/dehydratase; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: cpi:Cpin_4313 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family YP_004654074.1 PFAM: Cyclic nucleotide-binding domain; COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154:IPR013149; KEGG: oih:OB3353 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; PRIAM: L-iditol 2-dehydrogenase; SPTR: Alcohol dehydrogenase YP_004654075.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: dae:Dtox_3261 filamentation induced by cAMP protein Fic; PFAM: Filamentation induced by cAMP/death on curing, related; SPTR: Filamentation induced by cAMP protein Fic YP_004654076.1 PFAM: Fic/DOC family; KEGG: sen:SACE_2822 MFS superfamily vanillate transporter; SPTR: Vanillate transporter (MFS superfamily) YP_004654077.1 SPTR: Transposase IS4 family protein YP_004654078.1 COGs: COG2159 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: sli:Slin_1557 amidohydrolase 2; PFAM: Amidohydrolase 2; SPTR: Amidohydrolase 2 YP_004654079.1 PFAM: Amidohydrolase YP_004654080.1 KEGG: pru:PRU_0821 hypothetical protein; SPTR: uncharacterized protein YP_004654081.1 PFAM: S23 ribosomal protein; TIGRFAM: TIGR02436 family protein; KEGG: sli:Slin_1558 hypothetical protein; SPTR: uncharacterized protein YP_004654082.1 PFAM: Prolyl oligopeptidase; COGs: COG0620 Methionine synthase II (cobalamin-independent); InterPro IPR002629; KEGG: sli:Slin_1559 methionine synthase vitamin-B12 independent; PFAM: Methionine synthase, vitamin-B12 independent; SPTR: Methionine synthase vitamin-B12 independent YP_004654083.1 PFAM: Cobalamin-independent synthase, Catalytic domain; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: pag:PLES_27401 short-chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-hydroxy-2-methylbutyryl-CoA dehydrogenase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004654084.1 PFAM: short chain dehydrogenase; KEGG: bvu:BVU_0335 hypothetical protein; SPTR: uncharacterized protein YP_004654085.1 COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: sli:Slin_1560 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: AMP-dependent synthetase and ligase YP_004654086.1 PFAM: AMP-binding enzyme; COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: sli:Slin_1561 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR: Enoyl-CoA hydratase/isomerase YP_004654087.1 PFAM: Enoyl-CoA hydratase/isomerase YP_004654088.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: sli:Slin_1550 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004654089.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain; KEGG: rbi:RB2501_01071 hypothetical protein; SPTR: uncharacterized protein YP_004654090.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: sli:Slin_2180 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004654091.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076:IPR000172; KEGG: sli:Slin_4690 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase YP_004654092.1 PFAM: GMC oxidoreductase; KEGG: sli:Slin_4689 hypothetical protein; SPTR: uncharacterized protein YP_004654093.1 KEGG: sli:Slin_1562 hypothetical protein; SPTR: uncharacterized protein YP_004654094.1 PFAM: Protein of unknown function (DUF3237); COGs: COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; InterPro IPR006076; KEGG: sli:Slin_0336 monooxygenase FAD-binding protein; PFAM: FAD dependent oxidoreductase; SPTR: Monooxygenase FAD-binding protein YP_004654095.1 PFAM: FAD binding domain; COGs: COG2814 Arabinose efflux permease; InterPro IPR004812:IPR011701; KEGG: dfe:Dfer_1982 drug resistance transporter, Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1; SPTR: Drug resistance transporter, Bcr/CflA subfamily; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily YP_004654096.1 PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; Multidrug resistance protein; COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR012793:IPR002155; KEGG: sli:Slin_1532 beta-ketoadipyl CoA thiolase; PRIAM: 3-oxoadipyl-CoA thiolase; SPTR: Beta-ketoadipyl CoA thiolase; TIGRFAM: Beta-ketoadipyl CoA thiolase; Thiolase YP_004654097.1 PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; 3-oxoadipyl-CoA thiolase; COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: dfe:Dfer_4042 hypothetical protein; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein YP_004654098.1 COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; InterPro IPR012792:IPR012791:IPR004165; KEGG: sli:Slin_1533 3-oxoacid CoA-transferase subunit beta; PFAM: Coenzyme A transferase; PRIAM: 3-oxoacid CoA-transferase; SPTR: 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; 3-oxoacid CoA-transferase, subunit A YP_004654099.1 PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; 3-oxoacid CoA-transferase, A subunit; KEGG: npu:Npun_F0423 hypothetical protein; SPTR: uncharacterized protein YP_004654100.1 InterPro IPR003615:IPR002711; KEGG: cyj:Cyan7822_6695 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: HNH endonuclease YP_004654101.1 PFAM: HNH endonuclease; COGs: COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; InterPro IPR002938; KEGG: sli:Slin_1534 4-hydroxybenzoate 3-monooxygenase; PFAM: Monooxygenase, FAD-binding; PRIAM: 4-hydroxybenzoate 3-monooxygenase; SPTR: 4-hydroxybenzoate 3-monooxygenase YP_004654102.1 PFAM: FAD binding domain; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR012790:IPR012788:IPR000073:IPR003779; KEGG: sli:Slin_1535 3-oxoadipate enol-lactonase; PFAM: Carboxymuconolactone decarboxylase; Alpha/beta hydrolase fold-1; PRIAM: 3-oxoadipate enol-lactonase., 4-carboxymuconolactone decarboxylase; SPTR: 3-oxoadipate enol-lactonase; TIGRFAM: 3-oxoadipate enol-lactonase; 4-carboxymuconolactone decarboxylase YP_004654103.1 PFAM: Carboxymuconolactone decarboxylase; alpha/beta hydrolase fold; TIGRFAM: 4-carboxymuconolactone decarboxylase; 3-oxoadipate enol-lactonase; COGs: COG0015 Adenylosuccinate lyase; InterPro IPR012789:IPR000362:IPR019468; KEGG: sli:Slin_1536 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: Fumarate lyase; Adenylosuccinate lyase, C-terminal; PRIAM: 3-carboxy-cis,cis-muconate cycloisomerase; SPTR: 3-carboxy-cis,cis-muconate cycloisomerase; TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase YP_004654104.1 PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; COGs: COG3485 Protocatechuate 3 4-dioxygenase beta subunit; InterPro IPR012786:IPR000627; KEGG: sli:Slin_1537 protocatechuate 3,4-dioxygenase subunit alpha; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; PRIAM: Protocatechuate 3,4-dioxygenase; SPTR: Protocatechuate 3,4-dioxygenase, alpha subunit; TIGRFAM: Protocatechuate 3,4-dioxygenase, alpha subunit YP_004654105.1 TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; COGs: COG3485 Protocatechuate 3 4-dioxygenase beta subunit; InterPro IPR012785:IPR000627; KEGG: sli:Slin_1538 protocatechuate 3,4-dioxygenase subunit beta; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; PRIAM: Protocatechuate 3,4-dioxygenase; SPTR: Protocatechuate 3,4-dioxygenase, beta subunit; TIGRFAM: Protocatechuate 3,4-dioxygenase, beta subunit YP_004654106.1 PFAM: Protocatechuate 3,4-dioxygenase beta subunit N terminal; Dioxygenase; TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: sli:Slin_1539 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004654107.1 PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: sli:Slin_1556 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004654108.1 PFAM: Major Facilitator Superfamily; TIGRFAM: benzoate transport; COGs: COG1350 alternative tryptophan synthase beta-subunit (paralog of TrpB); HAMAP: Tryptophan synthase beta chain; InterPro IPR006316:IPR001926; KEGG: cag:Cagg_2123 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Tryptophan synthase; SPTR: uncharacterized protein; TIGRFAM: Tryptophan synthase, beta chain-like YP_004654109.1 PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: pyridoxal-phosphate dependent TrpB-like enzyme YP_004654111.1 Prodigal; manually curated YP_004654112.1 PFAM: Cytochrome c; HEAT repeat; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type; KEGG: dfe:Dfer_4959 hypothetical protein; SPTR: uncharacterized protein YP_004654113.1 PFAM: Heparinase II/III-like protein; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR006584:IPR003088:IPR005084; KEGG: sli:Slin_3440 PKD domain containing protein; PFAM: Carbohydrate binding domain, family 6; PKD; Cytochrome c, class I; SMART: PKD; Cellulose binding, type IV; SPTR: PKD domain containing protein YP_004654114.1 PFAM: Cytochrome c; Trehalose utilisation; Carbohydrate binding module (family 6); PKD domain; COGs: COG0001 Glutamate-1-semialdehyde aminotransferase; HAMAP: Glutamate-1-semialdehyde 2,1-aminomutase; InterPro IPR004639:IPR005814; KEGG: dfe:Dfer_1148 glutamate-1-semialdehyde aminotransferase; PFAM: Aminotransferase class-III; PRIAM: Glutamate-1-semialdehyde 2,1-aminomutase; SPTR: Glutamate-1-semialdehyde 2,1-aminomutase; TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase YP_004654115.1 PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; KEGG: sli:Slin_2013 hypothetical protein; SPTR: uncharacterized protein YP_004654116.1 PFAM: Receptor family ligand binding region; COGs: COG1109 Phosphomannomutase; InterPro IPR005844:IPR005845; KEGG: dfe:Dfer_4939 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; SPTR: Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_004654117.1 PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro IPR003347; KEGG: dfe:Dfer_4653 transcription factor jumonji JmjC domain protein; SMART: Transcription factor jumonji/aspartyl beta-hydroxylase; SPTR: Transcription factor jumonji jmjC domain protein YP_004654118.1 InterPro IPR010499; KEGG: dfe:Dfer_3911 transcription activator, effector binding; PFAM: Bacterial transcription activator, effector binding; SPTR: Transcription activator, effector binding YP_004654119.1 PFAM: Bacterial transcription activator, effector binding domain; COGs: COG2764 conserved hypothetical protein; InterPro IPR004360; KEGG: phe:Phep_1228 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004654120.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; COGs: COG2378 transcriptional regulator protein; InterPro IPR001034:IPR013196; KEGG: sli:Slin_1289 hypothetical protein; SMART: HTH transcriptional regulator, DeoR N-terminal; SPTR: Helix-turn-helix type 11 domain protein YP_004654121.1 PFAM: HTH domain; KEGG: dfe:Dfer_0156 hypothetical protein; SPTR: uncharacterized protein YP_004654123.1 COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: bcj:BCAM2643 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase YP_004654124.1 PFAM: Beta-lactamase YP_004654125.1 COGs: COG4938 conserved hypothetical protein; KEGG: tye:THEYE_A0523 hypothetical protein; SPTR: uncharacterized protein YP_004654126.1 KEGG: sli:Slin_5502 hypothetical protein; SPTR: uncharacterized protein YP_004654127.1 KEGG: dfe:Dfer_4482 hypothetical protein; SPTR: uncharacterized protein YP_004654128.1 COGs: COG4185 conserved hypothetical protein; KEGG: dfe:Dfer_4483 hypothetical protein; SPTR: uncharacterized protein YP_004654129.1 PFAM: Zeta toxin YP_004654130.1 COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764:IPR002772:IPR001466; KEGG: dfe:Dfer_2708 beta-lactamase; PFAM: Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal; Beta-lactamase-related; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Beta-lactamase YP_004654131.1 PFAM: Glycosyl hydrolase 3 C terminal domain; Glycosyl hydrolase 3 N terminal domain; Beta-lactamase; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466:IPR011659; KEGG: sli:Slin_1815 beta-lactamase; PFAM: Beta-lactamase-related; WD40-like Beta Propeller; SPTR: Beta-lactamase YP_004654132.1 PFAM: WD40-like Beta Propeller Repeat; Beta-lactamase; InterPro IPR012312; KEGG: lby:Lbys_2912 hypothetical protein; PFAM: Haemerythrin/HHE cation-binding motif; SPTR: uncharacterized protein YP_004654133.1 PFAM: Hemerythrin HHE cation binding domain; COGs: COG2055 Malate/L-lactate dehydrogenase; InterPro IPR003767; KEGG: sli:Slin_0235 malate/L-lactate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase; PRIAM: Malate dehydrogenase; SPTR: Malate/L-lactate dehydrogenase YP_004654134.1 PFAM: Malate/L-lactate dehydrogenase; COGs: COG3391 conserved hypothetical protein; InterPro IPR007312; KEGG: sli:Slin_6217 40-residue YVTN family beta-propeller repeat protein; PFAM: Phosphoesterase; SPTR: 40-residue YVTN family beta-propeller repeat protein YP_004654135.1 PFAM: Phosphoesterase; 3-carboxy-cis,cis-muconate lactonizing enzyme; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: gvi:glr0280 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: Glr0280 protein YP_004654136.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG3391 conserved hypothetical protein; InterPro IPR011964:IPR007312; KEGG: sli:Slin_3396 phosphoesterase; PFAM: Phosphoesterase; SPTR: Phosphoesterase; TIGRFAM: YVTN beta-propeller repeat YP_004654137.1 PFAM: Phosphoesterase; TIGRFAM: 40-residue YVTN family beta-propeller repeat; COGs: COG0076 Glutamate decarboxylase and related PLP-dependent protein; InterPro IPR002129; KEGG: fjo:Fjoh_1514 pyridoxal-dependent decarboxylase; PFAM: Pyridoxal phosphate-dependent decarboxylase; PRIAM: Diaminobutyrate decarboxylase; SPTR: Pyridoxal-dependent decarboxylase YP_004654138.1 PFAM: Pyridoxal-dependent decarboxylase conserved domain; COGs: COG2334 homoserine kinase type II (protein kinase fold); InterPro IPR002575; KEGG: dfe:Dfer_0292 aminoglycoside phosphotransferase; PFAM: Aminoglycoside phosphotransferase; SPTR: Aminoglycoside phosphotransferase YP_004654139.1 PFAM: Phosphotransferase enzyme family YP_004654140.1 KEGG: sli:Slin_0430 hypothetical protein; SPTR: uncharacterized protein YP_004654141.1 PFAM: Late embryogenesis abundant protein; KEGG: sli:Slin_4662 hypothetical protein; SPTR: uncharacterized protein YP_004654142.1 PFAM: Protein of unknown function (DUF3179); InterPro IPR000326; KEGG: sli:Slin_4663 phosphoesterase PA-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: Phosphoesterase PA-phosphatase related protein YP_004654143.1 PFAM: PAP2 superfamily; KEGG: sli:Slin_4664 hypothetical protein; SPTR: uncharacterized protein YP_004654144.1 KEGG: sli:Slin_4666 hypothetical protein; SPTR: uncharacterized protein YP_004654145.1 KEGG: dfe:Dfer_0024 hypothetical protein; SPTR: uncharacterized protein YP_004654146.1 InterPro IPR019619; PFAM: Protein of unknown function DUF2490 YP_004654147.1 PFAM: Protein of unknown function (DUF2490); COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dfe:Dfer_0253 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1 YP_004654148.1 PFAM: Glycosyl transferases group 1; KEGG: dfe:Dfer_3713 hypothetical protein; SPTR: uncharacterized protein YP_004654149.1 KEGG: lby:Lbys_1640 hypothetical protein; SPTR: uncharacterized protein YP_004654153.1 KEGG: lby:Lbys_1639 hypothetical protein; SPTR: uncharacterized protein YP_004654156.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: lby:Lbys_1637 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein YP_004654157.1 PFAM: OmpA family YP_004654158.1 COGs: COG2972 signal transduction protein with a C-terminal ATPase domain; InterPro IPR010559; KEGG: dfe:Dfer_1280 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS YP_004654159.1 PFAM: Histidine kinase; 7TM diverse intracellular signalling; 7TMR-DISM extracellular 2; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_1279 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004654160.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: dfe:Dfer_4778 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein YP_004654161.1 PFAM: Protein of unknown function (DUF820); COGs: COG0519 GMP synthase PP-ATPase domain/subunit; HAMAP: GMP synthase [glutamine-hydrolyzing]; InterPro IPR004739:IPR001674:IPR000991:IPR018318; KEGG: dfe:Dfer_2697 GMP synthase; PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; tRNA methyl transferase-like; PRIAM: GMP synthase (glutamine-hydrolyzing); SPTR: GMP synthase [glutamine-hydrolyzing]; TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal YP_004654162.1 PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit; KEGG: sli:Slin_0996 hypothetical protein; SPTR: uncharacterized protein YP_004654163.1 COGs: COG1760 L-serine deaminase; InterPro IPR004644:IPR005131:IPR005130; KEGG: lby:Lbys_1842 L-serine ammonia-lyase; PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain; SPTR: L-serine ammonia-lyase; TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form YP_004654164.1 PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, single chain form; KEGG: rrs:RoseRS_0445 hypothetical protein; SPTR: uncharacterized protein YP_004654165.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: cbb:CLD_3508 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: transcriptional regulator YP_004654166.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004654167.1 COGs: COG0004 Ammonia permease; InterPro IPR001905; KEGG: sli:Slin_1347 ammonium transporter; PFAM: Ammonium transporter; SPTR: Ammonium transporter; TIGRFAM: Ammonium transporter YP_004654168.1 PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter; KEGG: dfe:Dfer_0442 outer membrane protein; SPTR: Outer membrane protein YP_004654169.1 InterPro IPR001450; KEGG: sli:Slin_1345 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_004654170.1 KEGG: dfe:Dfer_0440 acyl-CoA reductase; SPTR: Acyl-CoA reductase YP_004654171.1 PFAM: Acyl-CoA reductase (LuxC); COGs: COG2170 conserved hypothetical protein; HAMAP: Carboxylate-amine ligase ybdK; InterPro IPR011793:IPR006336; KEGG: sli:Slin_1316 glutamate--cysteine ligase; PFAM: Glutamate--cysteine ligase, GCS2; SPTR: Carboxylate-amine ligase Slin_1316; TIGRFAM: Carboxylate-amine ligase, predicted YP_004654172.1 PFAM: Glutamate-cysteine ligase 2(GCS2); TIGRFAM: carboxylate-amine ligase, YbdK family; COGs: COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); KEGG: lby:Lbys_1134 glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase)-like protein; SPTR: Glutathione synthase/ribosomal protein S6 modification enzyme (Glutaminyl transferase)-like protein YP_004654173.1 COGs: COG4947 conserved hypothetical protein; InterPro IPR000801; KEGG: dfe:Dfer_0438 esterase; PFAM: esterase; SPTR: esterase YP_004654174.1 PFAM: esterase; COGs: COG0854 Pyridoxal phosphate biosynthesis protein; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; InterPro IPR004569; KEGG: dfe:Dfer_4728 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; PRIAM: Pyridoxine 5'-phosphate synthase; SPTR: Pyridoxine 5'-phosphate synthase; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ YP_004654175.1 PFAM: Pyridoxal phosphate biosynthesis protein PdxJ; TIGRFAM: pyridoxine 5'-phosphate synthase; COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006056:IPR006175; KEGG: sli:Slin_4890 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: uncharacterized protein; TIGRFAM: YjgF-like protein YP_004654176.1 PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR002155; KEGG: sli:Slin_5109 acetyl-CoA acetyltransferase; PRIAM: Acetyl-CoA C-acyltransferase; SPTR: Acetyl-CoA acetyltransferase; TIGRFAM: Thiolase YP_004654177.1 PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; KEGG: mtt:Ftrac_3437 hypothetical protein; SPTR: uncharacterized protein YP_004654178.1 COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: cbg:CbuG_1385 acyltransferase; PFAM: Acyltransferase 3; SPTR: Acyltransferase YP_004654179.1 PFAM: Acyltransferase; KEGG: chu:CHU_1634 hypothetical protein; SPTR: uncharacterized protein YP_004654180.1 COGs: COG4947 conserved hypothetical protein; KEGG: dfe:Dfer_4768 hypothetical protein; SPTR: uncharacterized protein YP_004654181.1 PFAM: esterase; COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: dfe:Dfer_3406 Na+/solute symporter; PFAM: Sodium/solute symporter; SPTR: Na+/solute symporter YP_004654182.1 PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: dfe:Dfer_3873 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase YP_004654183.1 PFAM: NUDIX domain; COGs: COG1512 Beta-propeller domains of methanol dehydrogenase type; InterPro IPR007621; KEGG: sli:Slin_5849 hypothetical protein; PFAM: Protein of unknown function DUF477; SPTR: uncharacterized protein YP_004654184.1 PFAM: Domain of unknown function (DUF477); COGs: COG3762 membrane protein; InterPro IPR007621; KEGG: sli:Slin_5848 hypothetical protein; PFAM: Protein of unknown function DUF477; SPTR: uncharacterized protein YP_004654185.1 PFAM: Domain of unknown function (DUF477); COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: sli:Slin_5847 LemA family protein; PFAM: LemA; SPTR: LemA family protein YP_004654186.1 PFAM: LemA family; InterPro IPR004993; KEGG: dfe:Dfer_3419 GH3 auxin-responsive promoter; PFAM: GH3 auxin-responsive promoter; SPTR: GH3 auxin-responsive promoter YP_004654187.1 PFAM: GH3 auxin-responsive promoter; COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129; KEGG: sli:Slin_5652 glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase; SPTR: Glycerophosphoryl diester phosphodiesterase YP_004654188.1 PFAM: Glycerophosphoryl diester phosphodiesterase; COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891; KEGG: sli:Slin_5897 pyruvate carboxyltransferase; PFAM: Pyruvate carboxyltransferase; PRIAM: 2-isopropylmalate synthase; SPTR: Pyruvate carboxyltransferase YP_004654189.1 PFAM: HMGL-like; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR000172:IPR007867; KEGG: sli:Slin_5650 choline dehydrogenase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal; PRIAM: Choline dehydrogenase; SPTR: Choline dehydrogenase YP_004654190.1 PFAM: GMC oxidoreductase YP_004654192.1 COGs: COG1725 transcriptional regulator protein; InterPro IPR000524; KEGG: phe:Phep_3352 regulatory protein GntR; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; SPTR: Regulatory protein GntR HTH YP_004654193.1 PFAM: Bacterial regulatory proteins, gntR family; KEGG: cpi:Cpin_7290 hypothetical protein; SPTR: uncharacterized protein YP_004654194.1 KEGG: cpi:Cpin_7290 hypothetical protein; SPTR: uncharacterized protein YP_004654195.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: cpi:Cpin_7291 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related YP_004654196.1 PFAM: ABC transporter; KEGG: sli:Slin_5041 hypothetical protein; SPTR: uncharacterized protein YP_004654197.1 COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR013520:IPR006055; KEGG: dfe:Dfer_3900 DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; SPTR: DNA polymerase III, epsilon subunit YP_004654198.1 PFAM: Exonuclease; KEGG: sli:Slin_0793 hypothetical protein; SPTR: uncharacterized protein YP_004654199.1 COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: dfe:Dfer_5607 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004654200.1 PFAM: Predicted permease YP_004654201.1 InterPro IPR013427; KEGG: sli:Slin_0965 heme-binding protein; SPTR: Heme-binding protein; TIGRFAM: haem-binding region YP_004654202.1 PFAM: Cytochrome c; TIGRFAM: heme-binding domain, Pirellula/Verrucomicrobium type; InterPro IPR012944; KEGG: sli:Slin_0963 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein YP_004654203.1 PFAM: SusD family; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: sli:Slin_0962 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004654204.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG1879 ABC-type sugar transport system periplasmic component; InterPro IPR001761; KEGG: sli:Slin_1047 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SPTR: Periplasmic binding protein/LacI transcriptional regulator YP_004654205.1 PFAM: family; COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: sli:Slin_1048 inner-membrane translocator; PFAM: Bacterial inner-membrane translocator; SPTR: Inner-membrane translocator YP_004654206.1 PFAM: Branched-chain amino acid transport system / permease component; COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: sli:Slin_1049 ABC transporter; PFAM: ABC transporter-like; PRIAM: Monosaccharide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein YP_004654207.1 PFAM: ABC transporter; KEGG: sli:Slin_4611 hypothetical protein; SPTR: uncharacterized protein YP_004654208.1 InterPro IPR002934; KEGG: ppn:Palpr_2605 DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase; SPTR: DNA polymerase beta domain protein region; manually curated YP_004654209.1 PFAM: Nucleotidyltransferase domain; COGs: COG1895 conserved hypothetical protein related to C-terminal domain of eukaryotic chaperone SACSIN; InterPro IPR007842; KEGG: tna:CTN_1578 hypothetical protein; PFAM: HEPN; SPTR: Toxin-antitoxin system antitoxin component YP_004654210.1 PFAM: HEPN domain; COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: dfe:Dfer_2465 hypothetical protein; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein YP_004654211.1 PFAM: Archaeal ATPase YP_004654213.1 KEGG: ami:Amir_5397 hypothetical protein; SPTR: uncharacterized protein YP_004654214.1 PFAM: NACHT domain; COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated YP_004654215.1 PFAM: Rhodopirellula transposase; 'Paired box' domain YP_004654216.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: sli:Slin_0970 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004654217.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; InterPro IPR012307; KEGG: sli:Slin_0969 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004654218.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: dfe:Dfer_3169 hypothetical protein; SPTR: uncharacterized protein YP_004654219.1 KEGG: sli:Slin_0967 hypothetical protein; SPTR: uncharacterized protein YP_004654220.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dfe:Dfer_3171 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein YP_004654221.1 PFAM: alpha/beta hydrolase fold; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: dfe:Dfer_3172 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004654222.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: dfe:Dfer_3173 signal peptide; SPTR: Signal peptide YP_004654223.1 PFAM: Trehalose utilisation; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: dfe:Dfer_3174 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004654224.1 PFAM: Xylose isomerase-like TIM barrel; InterPro IPR010496; KEGG: sli:Slin_0966 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein YP_004654225.1 PFAM: Domain of Unknown Function (DUF1080) YP_004654226.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594:IPR001789; KEGG: dfe:Dfer_2525 PAS/PAC sensor hybrid histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase YP_004654227.1 PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG3287 conserved hypothetical protein; InterPro IPR013702:IPR019494; KEGG: sli:Slin_0140 FIST C domain protein; PFAM: FIST C domain; FIST domain, N-terminal; SPTR: FIST C domain protein YP_004654228.1 PFAM: FIST C domain; FIST N domain; COGs: COG0384 epimerase PhzC/PhzF homolog; InterPro IPR003719; KEGG: dfe:Dfer_2672 phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; SPTR: Phenazine biosynthesis protein PhzF family; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein YP_004654229.1 PFAM: Phenazine biosynthesis-like protein; TIGRFAM: phenazine biosynthesis protein PhzF family; KEGG: sli:Slin_4487 thioredoxin; SPTR: Thioredoxin-related protein-like protein YP_004654230.1 PFAM: Protein of unknown function, DUF255; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: sli:Slin_0411 carbohydrate kinase, FGGY-like protein; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; PRIAM: Gluconokinase; SPTR: Carbohydrate kinase, FGGY-like protein YP_004654231.1 PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: gluconate kinase, FGGY type; COGs: COG1522 Transcriptional regulators; InterPro IPR019887:IPR019888; KEGG: fjo:Fjoh_4658 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type; SPTR: Regulatory protein AsnC YP_004654232.1 PFAM: AsnC family; KEGG: dfe:Dfer_3925 conserved hypothetical protein, membrane or secreted; SPTR: uncharacterized protein YP_004654233.1 COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814:IPR010164; KEGG: sur:STAUR_1193 ornithine-oxo-acid transaminase; PFAM: Aminotransferase class-III; PRIAM: Ornithine aminotransferase; SPTR: Ornithine-oxo-acid transaminase; TIGRFAM: Ornithine aminotransferase YP_004654234.1 PFAM: Aminotransferase class-III; TIGRFAM: ornithine aminotransferase; COGs: COG0415 Deoxyribodipyrimidine photolyase; InterPro IPR006050:IPR005101:IPR014133; KEGG: sli:Slin_6186 cryptochrome, DASH family; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal; SPTR: Cryptochrome, DASH family; TIGRFAM: Cryptochrome, DASH YP_004654235.1 PFAM: FAD binding domain of DNA photolyase; DNA photolyase; TIGRFAM: cryptochrome, DASH family; InterPro IPR004360; KEGG: chu:CHU_2533 lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Lactoylglutathione lyase YP_004654236.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG0218 GTPase; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; InterPro IPR019987:IPR002917; KEGG: osp:Odosp_1339 GTP-binding protein EngB; PFAM: GTP-binding protein, HSR1-related; SPTR: GTP-binding protein; TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC YP_004654237.1 PFAM: GTPase of unknown function; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC/EngB; COGs: COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); InterPro IPR011611:IPR017583; KEGG: dfe:Dfer_4571 1-phosphofructokinase; PFAM: Carbohydrate/purine kinase; PRIAM: 6-phosphofructokinase; SPTR: 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase YP_004654238.1 PFAM: pfkB family carbohydrate kinase; TIGRFAM: hexose kinase, 1-phosphofructokinase; COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); InterPro IPR001450; KEGG: dfe:Dfer_4037 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_004654239.1 KEGG: ldb:Ldb1963 hypothetical protein; SPTR: uncharacterized protein YP_004654240.1 COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: sli:Slin_0514 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: tRNA/rRNA methyltransferase (SpoU) YP_004654241.1 PFAM: SpoU rRNA Methylase; COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: sli:Slin_3480 peptidase M16 domain protein; PFAM: Peptidase M16, N-terminal; Peptidase M16, C-terminal; PRIAM: processing peptidase; SPTR: Peptidase M16 domain protein YP_004654242.1 PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16); COGs: COG4122 O-methyltransferase; InterPro IPR002935; KEGG: dfe:Dfer_2897 O-methyltransferase 3; PFAM: O-methyltransferase, family 3; PRIAM: Caffeoyl-CoA O-methyltransferase; SPTR: O-methyltransferase 3 YP_004654243.1 PFAM: O-methyltransferase; InterPro IPR008258:IPR018392:IPR002482; KEGG: sli:Slin_0474 peptidoglycan-binding lysin domain protein; PFAM: Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SPTR: Peptidoglycan-binding lysin domain protein YP_004654244.1 PFAM: Transglycosylase SLT domain; LysM domain; KEGG: mtt:Ftrac_0122 hypothetical protein; SPTR: uncharacterized protein YP_004654245.1 PFAM: Protein of unknown function (DUF3109); COGs: COG3695 methylated DNA-protein cysteine methyltransferase; InterPro IPR014048; KEGG: sli:Slin_0476 methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding protein; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; SPTR: Methylated-DNA-(Protein)-cysteine S-methyltransferase DNA binding protein YP_004654246.1 PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_2542 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein YP_004654247.1 PFAM: WD40-like Beta Propeller Repeat; OmpA family YP_004654250.1 InterPro IPR002559; KEGG: app:CAP2UW1_1881 transposase IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase IS4 family protein YP_004654251.1 PFAM: Transposase DDE domain; COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310; KEGG: sli:Slin_1055 histidine triad (HIT) protein; PFAM: Histidine triad (HIT) protein; SPTR: Histidine triad (HIT) protein YP_004654252.1 PFAM: HIT domain; KEGG: lby:Lbys_2206 thrombospondin type 3 repeat-containing protein; SPTR: Thrombospondin type 3 repeat-containing protein YP_004654253.1 COGs: COG0480 Translation elongation factors (GTPase); InterProIPR000795:IPR004161:IPR005517:IPR000640:IPR 004540:IPR005225; KEGG: sli:Slin_5571 translation elongation factor G; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; SPTR: Elongation factor G; TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein YP_004654254.1 PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain; COGs: COG0051 Ribosomal protein S10; HAMAP: 30S ribosomal protein S10; InterPro IPR001848:IPR005731; KEGG: sli:Slin_5570 ribosomal protein S10; PFAM: Ribosomal protein S10; SPTR: 30S ribosomal protein S10; TIGRFAM: Ribosomal protein S10, bacterial YP_004654255.1 PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle YP_004654257.1 InterPro IPR000792; KEGG: ppm:PPSC2_c0399 transcriptional regulatory protein DegU (protease production enhancerprotein); PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: Transcriptional regulatory protein DegU (Protease production enhancerprotein) YP_004654258.1 PFAM: Bacterial regulatory proteins, luxR family YP_004654260.1 InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_4749 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004654261.1 PFAM: TonB-dependent Receptor Plug Domain YP_004654262.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sli:Slin_4261 sulfatase; PFAM: Sulfatase; PRIAM: Cerebroside-sulfatase; SPTR: Sulfatase YP_004654263.1 PFAM: Sulfatase; KEGG: cao:Celal_1651 hypothetical protein; SPTR: uncharacterized protein YP_004654264.1 KEGG: dfe:Dfer_1170 hypothetical protein; SPTR: uncharacterized protein YP_004654265.1 Prodigal; manually curated YP_004654266.1 PFAM: Sulfatase; COGs: COG2989 conserved hypothetical protein; InterPro IPR002477:IPR005490; KEGG: cpi:Cpin_0941 ErfK/YbiS/YcfS/YnhG family protein; PFAM: YkuD domain; Peptidoglycan binding-like; SPTR: ErfK/YbiS/YcfS/YnhG family protein YP_004654267.1 PFAM: peptidoglycan binding domain; L,D-transpeptidase catalytic domain; COGs: COG0443 Molecular chaperone; InterPro IPR013126; KEGG: sli:Slin_1429 DnaK-type molecular chaperone DnaK; PFAM: Heat shock protein 70; SPTR: DnaK-type molecular chaperone DnaK YP_004654268.1 PFAM: Hsp70 protein; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_5135 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein YP_004654269.1 PFAM: Outer membrane efflux protein; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: dfe:Dfer_5136 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein YP_004654270.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_5137 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD YP_004654271.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_004654272.1 KEGG: sli:Slin_1872 hypothetical protein; SPTR: uncharacterized protein YP_004654273.1 PFAM: Protein of unknown function (DUF3570); KEGG: sli:Slin_1873 lipoprotein; SPTR: lipoprotein YP_004654274.1 COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: cpi:Cpin_5765 ApbE family lipoprotein; PFAM: ApbE-like lipoprotein; SPTR: ApbE family lipoprotein YP_004654275.1 PFAM: ApbE family; KEGG: sli:Slin_1875 hypothetical protein; SPTR: uncharacterized protein YP_004654276.1 PFAM: AhpC/TSA family; InterPro IPR017941; KEGG: sli:Slin_1876 Rieske (2Fe-2S) iron-sulphur domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Rieske (2Fe-2S) iron-sulphur domain protein YP_004654277.1 PFAM: Rieske [2Fe-2S] domain; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_0332 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor YP_004654278.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_0331 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS YP_004654279.1 PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_3280 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004654280.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; KEGG: dfe:Dfer_4613 hypothetical protein; SPTR: uncharacterized protein YP_004654281.1 InterPro IPR000834; KEGG: gau:GAU_2982 hypothetical protein; PFAM: Peptidase M14, carboxypeptidase A; SMART: Peptidase M14, carboxypeptidase A; SPTR: peptidase M14, carboxypeptidase A YP_004654282.1 PFAM: Zinc carboxypeptidase; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sfu:Sfum_1138 beta-lactamase domain-containing protein; SPTR: Beta-lactamase domain protein YP_004654283.1 PFAM: Metallo-beta-lactamase superfamily; COGs: COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase glutamine amidotransferase domain; HAMAP: Phosphoribosylformylglycinamidine synthase 1; InterPro IPR011698:IPR010075; KEGG: lby:Lbys_3066 phosphoribosylformylglycinamidine synthase subunit I; PFAM: CobB/CobQ-like glutamine amidotransferase; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: Phosphoribosylformylglycinamidine synthase subunit I; TIGRFAM: Phosphoribosylformylglycinamidine synthase I YP_004654284.1 PFAM: CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: phosphoribosylformylglycinamidine synthase I; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: dfe:Dfer_3196 surface antigen (D15); PFAM: Bacterial surface antigen (D15); SPTR: Surface antigen (D15) YP_004654285.1 PFAM: Surface antigen; InterPro IPR007452; KEGG: dfe:Dfer_3195 protein of unknown function DUF490; PFAM: Protein of unknown function DUF490; SPTR: uncharacterized protein; manually curated YP_004654286.1 PFAM: Family of unknown function (DUF490); KEGG: dfe:Dfer_3194 hypothetical protein; SPTR: uncharacterized protein YP_004654288.1 COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; InterPro IPR005475:IPR005476; KEGG: lby:Lbys_1402 transketolase central region; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: Pyruvate dehydrogenase (acetyl-transferring); SPTR: Transketolase central region YP_004654289.1 PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; COGs: COG2124 Cytochrome P450; InterPro IPR001128; KEGG: sli:Slin_0451 cytochrome P450; PFAM: Cytochrome P450; PRIAM: Unspecific monooxygenase; SPTR: Cytochrome P450; manually curated YP_004654290.1 PFAM: Cytochrome P450; COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: dfe:Dfer_2377 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein YP_004654291.1 PFAM: OmpA family; SPTR: Transposase IS4 family protein YP_004654292.1 COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151:IPR004447; KEGG: sli:Slin_3923 carboxyl-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: Carboxyl-terminal protease; TIGRFAM: Peptidase S41A, C-terminal protease YP_004654293.1 PFAM: Peptidase S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_4671 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004654294.1 PFAM: short chain dehydrogenase; Prodigal; manually curated YP_004654295.1 PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase; COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase; HAMAP: nicotinate-nucleotide adenylyltransferase; InterPro IPR004820:IPR004821:IPR005248; KEGG: sli:Slin_5549 nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: Cytidylyltransferase; PRIAM: Nicotinate-nucleotide adenylyltransferase; SPTR: Probable nicotinate-nucleotide adenylyltransferase; TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related YP_004654296.1 PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain; COGs: COG0236 Acyl carrier protein; HAMAP: Acyl carrier protein (ACP); InterPro IPR003231:IPR006163; KEGG: mtt:Ftrac_1173 acyl carrier protein; PFAM: Phosphopantetheine-binding; SPTR: Acyl carrier protein 1; TIGRFAM: Acyl carrier protein (ACP) YP_004654297.1 PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein; COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030:IPR014031:IPR017568; KEGG: dfe:Dfer_3915 3-oxoacyl-(acyl-carrier-protein) synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase II; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase 2; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2 YP_004654298.1 PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II; COGs: COG0571 dsRNA-specific ribonuclease; HAMAP: Ribonuclease III, bacterial; InterPro IPR011907:IPR000999:IPR001159; KEGG: dfe:Dfer_3916 ribonuclease III; PFAM: Ribonuclease III; Double-stranded RNA binding; PRIAM: Ribonuclease III; SMART: Ribonuclease III; Double-stranded RNA binding; SPTR: Ribonuclease 3; TIGRFAM: Ribonuclease III, bacterial YP_004654299.1 PFAM: RNase3 domain; Double-stranded RNA binding motif; TIGRFAM: ribonuclease III, bacterial YP_004654300.1 InterPro IPR002559; KEGG: app:CAP2UW1_1881 transposase IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase IS4 family protein YP_004654301.1 PFAM: Transposase DDE domain YP_004654304.1 KEGG: dfe:Dfer_3662 hypothetical protein; SPTR: uncharacterized protein YP_004654305.1 InterPro IPR013211; KEGG: sli:Slin_5493 hypothetical protein; PFAM: LVIVD; SPTR: uncharacterized protein YP_004654306.1 COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; KEGG: sli:Slin_5757 superfamily I DNA and RNA helicase and helicase subunits-like protein; SPTR: Superfamily I DNA and RNA helicase and helicase subunits-like protein YP_004654307.1 KEGG: cao:Celal_1424 hypothetical protein; SPTR: uncharacterized protein YP_004654308.1 KEGG: sli:Slin_3044 hypothetical protein; SPTR: uncharacterized protein YP_004654309.1 InterPro IPR014127; KEGG: dfe:Dfer_5052 hypothetical protein; PFAM: Conserved hypothetical protein CHP02757; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02757 YP_004654310.1 PFAM: Protein of unknown function (DUF2400); TIGRFAM: TIGR02757 family protein YP_004654311.1 COGs: COG3744 conserved hypothetical protein; InterPro IPR002716; KEGG: sli:Slin_3651 PilT protein domain protein; PFAM: PilT protein, N-terminal; SPTR: PilT protein domain protein YP_004654312.1 PFAM: PIN domain; COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: lpp:plpp0112 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: Nucleotidyltransferase plus glutamate rich protein grpb plus ribosomal protein alanine acetyltransferase YP_004654313.1 PFAM: Acetyltransferase (GNAT) family; InterPro IPR006976; KEGG: dfe:Dfer_1230 VanZ family protein; PFAM: VanZ like protein; SPTR: VanZ family protein YP_004654314.1 PFAM: VanZ like family; COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; HAMAP: Isopropylmalate dehydrogenase; InterPro IPR004429:IPR001804; KEGG: dfe:Dfer_3671 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; PRIAM: 3-isopropylmalate dehydrogenase; SPTR: 3-isopropylmalate dehydrogenase; TIGRFAM: Isopropylmalate dehydrogenase YP_004654315.1 PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; KEGG: mtt:Ftrac_0562 hypothetical protein; SPTR: uncharacterized protein YP_004654316.1 COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891:IPR013709; KEGG: sli:Slin_5900 pyruvate carboxyltransferase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; PRIAM: (R)-citramalate synthase; SPTR: Pyruvate carboxyltransferase YP_004654317.1 PFAM: LeuA allosteric (dimerisation) domain; HMGL-like; COGs: COG0066 3-isopropylmalate dehydratase small subunit; InterPro IPR000573:IPR004431; KEGG: dfe:Dfer_3673 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel; SPTR: 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit region YP_004654318.1 PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; COGs: COG0065 3-isopropylmalate dehydratase large subunit; InterPro IPR001030:IPR004430; KEGG: dfe:Dfer_3675 isopropylmalate isomerase large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; SPTR: 3-isopropylmalate dehydratase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit region YP_004654319.1 PFAM: Aconitase (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: sli:Slin_5908 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004654320.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: lby:Lbys_0758 hypothetical protein; SPTR: uncharacterized protein YP_004654321.1 COGs: COG2361 conserved hypothetical protein; InterPro IPR008201; KEGG: rca:Rcas_0089 hypothetical protein; PFAM: Protein of unknown function DUF86; SPTR: uncharacterized protein; manually curated YP_004654322.1 PFAM: Protein of unknown function DUF86; Prodigal; manually curated YP_004654323.1 PFAM: YcfA-like protein; InterPro IPR005357; KEGG: mhu:Mhun_2648 hypothetical protein; PFAM: Uncharacterised protein family UPF0150; SPTR: uncharacterized protein YP_004654324.1 PFAM: Uncharacterised protein family (UPF0150); COGs: COG1171 Threonine dehydratase; InterPro IPR001926:IPR001721:IPR011820; KEGG: sli:Slin_5911 threonine dehydratase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threonine dehydratase, C-terminal; SPTR: Threonine dehydratase; TIGRFAM: Threonine dehydratase YP_004654325.1 PFAM: C-terminal regulatory domain of Threonine dehydratase; Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine ammonia-lyase, biosynthetic, long form; threonine dehydratase; COGs: COG0059 Ketol-acid reductoisomerase; InterPro IPR013116:IPR000506:IPR013023; KEGG: sli:Slin_5912 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal; SPTR: Ketol-acid reductoisomerase; TIGRFAM: Acetohydroxy acid isomeroreductase YP_004654326.1 PFAM: Acetohydroxy acid isomeroreductase, catalytic domain; TIGRFAM: ketol-acid reductoisomerase; InterPro IPR013216; KEGG: aba:Acid345_3127 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Generic methyltransferase YP_004654327.1 PFAM: Methyltransferase domain; COGs: COG0440 Acetolactate synthase small (regulatory) subunit; InterPro IPR002912:IPR019455:IPR004789; KEGG: sli:Slin_5913 acetolactate synthase, small subunit; PFAM: Amino acid-binding ACT; Acetolactate synthase, small subunit, C-terminal; SPTR: Acetolactate synthase, small subunit; TIGRFAM: Acetolactate synthase, small subunit YP_004654328.1 PFAM: ACT domain; Small subunit of acetolactate synthase; TIGRFAM: acetolactate synthase, small subunit; COGs: COG0028 Thiamine pyrophosphate-requiring protein; InterPro IPR012001:IPR012000:IPR011766:IPR012846; KEGG: dfe:Dfer_3681 acetolactate synthase, large subunit, biosynthetic type; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: Acetolactate synthase; SPTR: Acetolactate synthase; TIGRFAM: Acetolactate synthase, large subunit, biosynthetic YP_004654329.1 PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; COGs: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; HAMAP: Dihydroxy-acid dehydratase; InterPro IPR004404:IPR000581; KEGG: sli:Slin_5915 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; PRIAM: Dihydroxy-acid dehydratase; SPTR: Dihydroxy-acid dehydratase; TIGRFAM: Dihydroxy-acid dehydratase YP_004654330.1 PFAM: Dehydratase; TIGRFAM: dihydroxy-acid dehydratase; COGs: COG4095 conserved hypothetical protein; InterPro IPR018169:IPR006603; KEGG: cte:CT0076 hypothetical protein; PFAM: MtN3/saliva-related transmembrane protein, conserved region; SMART: Cystinosin/ERS1p repeat; SPTR: uncharacterized protein YP_004654331.1 PFAM: PQ loop repeat; COGs: COG0469 Pyruvate kinase; InterPro IPR015793:IPR015794:IPR001697; KEGG: dfe:Dfer_3378 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta; PRIAM: Pyruvate kinase; SPTR: Pyruvate kinase; TIGRFAM: Pyruvate kinase YP_004654332.1 PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase; COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; InterPro IPR011545:IPR001650:IPR014001:IPR005259; KEGG: dfe:Dfer_3377 primosomal protein N'; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Primosomal protein N'; TIGRFAM: Primosomal protein n YP_004654333.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: primosomal protein N'; KEGG: osp:Odosp_1433 hypothetical protein; SPTR: uncharacterized protein YP_004654334.1 InterPro IPR008454; KEGG: sli:Slin_4061 hypothetical protein; PFAM: Collagen-binding surface protein Cna-like, B region; SPTR: uncharacterized protein YP_004654335.1 KEGG: dfe:Dfer_3376 hypothetical protein; SPTR: uncharacterized protein YP_004654336.1 PFAM: Aminotransferase class IV; COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR015890; KEGG: dfe:Dfer_3375 para-aminobenzoate synthase component I; PFAM: Chorismate binding, C-terminal; SPTR: Chorismate binding-like protein YP_004654337.1 PFAM: chorismate binding enzyme; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: mtt:Ftrac_3639 surface antigen (d15); PFAM: Bacterial surface antigen (D15); SPTR: Surface antigen (D15) YP_004654338.1 PFAM: Surface antigen; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: rbi:RB2501_00611 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase YP_004654339.1 PFAM: Glycosyl transferase 2 YP_004654340.1 KEGG: dfe:Dfer_1441 hypothetical protein; SPTR: uncharacterized protein YP_004654341.1 InterPro IPR001387; KEGG: pmz:HMPREF0659_A6177 toxin-antitoxin system, antitoxin component, Xre family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: XRE family transcriptional regulator YP_004654342.1 PFAM: Helix-turn-helix YP_004654343.1 COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division; HAMAP: rRNA small subunit methyltransferase G; InterPro IPR003682; KEGG: dfe:Dfer_3357 methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G; SPTR: Ribosomal RNA small subunit methyltransferase G; TIGRFAM: rRNA small subunit methyltransferase G YP_004654344.1 PFAM: rRNA small subunit methyltransferase G; TIGRFAM: 16S rRNA (guanine(527)-N(7))-methyltransferase GidB; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_3358 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004654345.1 PFAM: Glycosyl transferase 2; COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; InterPro IPR004803:IPR002616; KEGG: dfe:Dfer_3359 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; PRIAM: tRNA-guanine transglycosylase; SPTR: Queuine tRNA-ribosyltransferase; TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase YP_004654346.1 PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: dfe:Dfer_3360 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein YP_004654347.1 PFAM: OmpA family; COGs: COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; InterProIPR001347:IPR001732:IPR014026:IPR014027:IPR 017476; KEGG: sli:Slin_4077 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; Sugar isomerase (SIS); UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; SPTR: Nucleotide sugar dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase YP_004654348.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase, central domain; UDP-glucose/GDP-mannose dehydrogenase, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase; COGs: COG0562 UDP-galactopyranose mutase; InterPro IPR006076:IPR015899:IPR004379; KEGG: dfe:Dfer_3361 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase, C-terminal; FAD dependent oxidoreductase; PRIAM: UDP-galactopyranose mutase; SPTR: UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase YP_004654349.1 PFAM: UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase YP_004654350.1 COGs: COG0247 Fe-S oxidoreductase; KEGG: dfe:Dfer_4017 oxidoreductase, Fe-S subunit; SPTR: Oxidoreductase, Fe-S subunit YP_004654351.1 COGs: COG1239 Mg-chelatase subunit ChlI; KEGG: sli:Slin_0326 Mg-chelatase subunit ChlI-like protein; SPTR: Mg-chelatase subunit ChlI-like protein YP_004654352.1 KEGG: sli:Slin_0645 hypothetical protein; SPTR: uncharacterized protein YP_004654353.1 COGs: COG5010 Flp pilus assembly protein TadD contains TPR repeats; InterPro IPR001440:IPR013105:IPR019734; KEGG: sli:Slin_1991 hypothetical protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide TPR_2 repeat protein YP_004654354.1 PFAM: Tetratricopeptide repeat; InterPro IPR000620; KEGG: cpi:Cpin_1584 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: uncharacterized protein YP_004654355.1 PFAM: EamA-like transporter family; KEGG: sli:Slin_6136 hypothetical protein; SPTR: uncharacterized protein YP_004654356.1 COGs: COG3002 conserved hypothetical protein; HAMAP: UPF0753 protein; InterPro IPR018752; KEGG: sli:Slin_1124 hypothetical protein; PFAM: Protein of unknown function DUF2309; SPTR: UPF0753 protein Slin_1124 YP_004654357.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2309); COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR001516:IPR001750; KEGG: sli:Slin_1125 NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH dehydrogenase (Quinone) YP_004654358.1 PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; COGs: COG3568 Metal-dependent hydrolase; InterPro IPR005135; KEGG: rba:RB8407 hypothetical protein; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase YP_004654359.1 PFAM: Endonuclease/Exonuclease/phosphatase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: sli:Slin_1480 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004654360.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain; COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220; KEGG: fbc:FB2170_10606 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase; PRIAM: Dihydrodipicolinate synthase; SPTR: Dihydrodipicolinate synthase YP_004654361.1 PFAM: Dihydrodipicolinate synthetase; manually curated YP_004654362.1 PFAM: Zeta toxin; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: pbs:Plabr_1258 sulfatase; PFAM: Sulfatase; SPTR: Choline sulfatase YP_004654363.1 PFAM: Sulfatase; InterPro IPR005181; KEGG: sli:Slin_2555 hypothetical protein; PFAM: Protein of unknown function DUF303, acetylesterase SPTR: uncharacterized protein YP_004654364.1 PFAM: Domain of unknown function (DUF303) YP_004654365.1 InterPro IPR006311; KEGG: sli:Slin_1890 hypothetical protein; SPTR: uncharacterized protein YP_004654366.1 COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076; KEGG: dfe:Dfer_4714 glucose-methanol-choline oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase YP_004654367.1 PFAM: GMC oxidoreductase; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sli:Slin_3337 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004654368.1 PFAM: Xylose isomerase-like TIM barrel; Prodigal; manually curated YP_004654369.1 COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: mmp:MMP0791 TetR family transcriptional regulator member; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR Family Member YP_004654370.1 PFAM: Bacterial regulatory proteins, tetR family; KEGG: chu:CHU_3332 hypothetical protein; SPTR: uncharacterized protein YP_004654371.1 COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; InterPro IPR001041:IPR002888; KEGG: bmj:BMULJ_01550 isoquinoline 1-oxidoreductase subunit alpha; PFAM: [2Fe-2S]-binding; Ferredoxin; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: Aldehyde dehydrogenase subunit III YP_004654372.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR008274:IPR006311; KEGG: rbi:RB2501_13024 aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL-like protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: Twin-arginine translocation pathway signal YP_004654373.1 PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; InterPro IPR019288; KEGG: dfe:Dfer_3714 hypothetical protein; PFAM: 3'-5' exonuclease, PolB-like; SPTR: uncharacterized protein YP_004654374.1 PFAM: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; COGs: COG0242 N-formylmethionyl-tRNA deformylase; HAMAP: Formylmethionine deformylase; InterPro IPR000181; KEGG: dfe:Dfer_4052 peptide deformylase; PFAM: Formylmethionine deformylase; PRIAM: Peptide deformylase; SPTR: Peptide deformylase; TIGRFAM: Formylmethionine deformylase YP_004654375.1 PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase; COGs: COG0816 endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); HAMAP: Holliday junction resolvase; InterPro IPR005227:IPR006641; KEGG: dfe:Dfer_4051 Holliday junction resolvase YqgF; PFAM: Resolvase, holliday junction-type, YqgF-like; SMART: Resolvase, RNase H-like fold; SPTR: Holliday junction resolvase; TIGRFAM: Resolvase, holliday junction-type, YqgF-like YP_004654376.1 PFAM: Uncharacterised protein family (UPF0081); TIGRFAM: RNAse H-fold protein YqgF; COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254:IPR001478:IPR011782; KEGG: dfe:Dfer_3918 protease Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF; SPTR: Protease Do; TIGRFAM: Peptidase S1C, Do YP_004654377.1 PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family; InterPro IPR006153; KEGG: lby:Lbys_1407 sodium/proton antiporter, cpa1 family; PFAM: Cation/H+ exchanger; SPTR: Na(+)/H(+) exchanger family protein YP_004654378.1 PFAM: Sodium/hydrogen exchanger family; COGs: COG0673 dehydrogenase and related protein; InterPro IPR013149:IPR000683; KEGG: pdi:BDI_1580 zinc-binding dehydrogenase; PFAM: Oxidoreductase, N-terminal; Alcohol dehydrogenase, zinc-binding; SPTR: Oxidoreductase YP_004654379.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Zinc-binding dehydrogenase; KEGG: sli:Slin_0251 hypothetical protein; SPTR: uncharacterized protein YP_004654380.1 PFAM: Protein of unknown function (DUF2905); InterPro IPR004740; KEGG: sli:Slin_0520 nucleoside:H symporter; PFAM: Nucleoside:H+ symporter; SPTR: Nucleoside:H symporter YP_004654381.1 PFAM: Nucleoside H+ symporter; TIGRFAM: nucleoside transporter; COGs: COG0708 Exonuclease III; InterPro IPR005135:IPR000097:IPR004808; KEGG: dfe:Dfer_2986 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: Exodeoxyribonuclease III; SPTR: Exodeoxyribonuclease III Xth; TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1 YP_004654382.1 PFAM: Endonuclease/Exonuclease/phosphatase; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth) YP_004654383.1 InterPro IPR001440:IPR013105:IPR019734; KEGG: dfe:Dfer_3772 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein YP_004654384.1 PFAM: Tetratricopeptide repeat; KEGG: sli:Slin_4397 hypothetical protein; SPTR: uncharacterized protein YP_004654385.1 COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR016047; KEGG: sli:Slin_4398 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23 YP_004654386.1 PFAM: Peptidase M23; COGs: COG0413 Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; InterPro IPR003700; KEGG: dfe:Dfer_3775 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; PRIAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; SPTR: 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: Ketopantoate hydroxymethyltransferase YP_004654389.1 KEGG: dfe:Dfer_3812 hypothetical protein; SPTR: uncharacterized protein YP_004654390.1 COGs: COG0323 DNA mismatch repair enzyme (predicted ATPase); HAMAP: DNA mismatch repair protein mutL; InterPro IPR003594:IPR013507:IPR014790:IPR014763; KEGG: dfe:Dfer_3811 DNA mismatch repair protein MutL; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATP-binding region, ATPase-like; SPTR: DNA mismatch repair protein mutL; TIGRFAM: DNA mismatch repair protein, N-terminal YP_004654391.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; MutL C terminal dimerisation domain; DNA mismatch repair protein, C-terminal domain; TIGRFAM: DNA mismatch repair protein MutL; InterPro IPR002610; KEGG: dfe:Dfer_3810 rhomboid family protein; PFAM: Peptidase S54, rhomboid; SPTR: Rhomboid family protein YP_004654392.1 PFAM: Rhomboid family; COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: dfe:Dfer_3809 rhomboid family protein; PFAM: Peptidase S54, rhomboid; SPTR: Rhomboid family protein YP_004654393.1 PFAM: Rhomboid family; COGs: COG1154 Deoxyxylulose-5-phosphate synthase; HAMAP: Deoxyxylulose-5-phosphate synthase; InterPro IPR005477:IPR005475:IPR005476; KEGG: sli:Slin_5566 deoxyxylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase; SPTR: 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: Deoxyxylulose-5-phosphate synthase YP_004654394.1 PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase; COGs: COG1301 Na+/H+-dicarboxylate symporter; InterPro IPR001991; KEGG: sli:Slin_1737 sodium:dicarboxylate symporter; PFAM: Sodium:dicarboxylate symporter; SPTR: Sodium:dicarboxylate symporter YP_004654395.1 PFAM: Sodium:dicarboxylate symporter family; InterPro IPR018713; KEGG: sli:Slin_2259 hypothetical protein; PFAM: Protein of unknown function DUF2236; SPTR: uncharacterized protein YP_004654396.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2236); InterPro IPR000835; KEGG: cpi:Cpin_4956 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family YP_004654397.1 InterPro IPR012910:IPR000531; KEGG: mtt:Ftrac_1466 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug YP_004654398.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; InterPro IPR012307:IPR006311; KEGG: dfe:Dfer_0469 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004654399.1 PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; KEGG: mpn:MPN138 hypothetical protein; SPTR: UPF0134 protein MPN_138 YP_004654400.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR011659:IPR001375; KEGG: sli:Slin_5739 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein YP_004654401.1 PFAM: Prolyl oligopeptidase; WD40-like Beta Propeller Repeat; COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: sli:Slin_2560 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PRIAM: N-carbamoylputrescine amidase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004654402.1 PFAM: Carbon-nitrogen hydrolase; TIGRFAM: N-carbamoylputrescine amidase; COGs: COG0139 Phosphoribosyl-AMP cyclohydrolase; HAMAP: Histidine biosynthesis bifunctional protein hisIE; InterPro IPR002496:IPR008179; KEGG: sli:Slin_5481 phosphoribosyl-ATP diphosphatase; PFAM: Phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphohydrolase; PRIAM: Phosphoribosyl-AMP cyclohydrolase., Phosphoribosyl-ATP diphosphatase; SPTR: Phosphoribosyl-ATP diphosphatase; TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase YP_004654403.1 PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; Phosphoribosyl-AMP cyclohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR002078:IPR003593; KEGG: sli:Slin_3615 two component, sigma54 specific, fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; SPTR: two component, sigma54 specific, transcriptional regulator, Fis family YP_004654404.1 PFAM: Response regulator receiver domain; Sigma-54 interaction domain YP_004654405.1 COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130; KEGG: sli:Slin_4816 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; SPTR: Peptidyl-prolyl cis-trans isomerase YP_004654406.1 PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; COGs: COG1078 HD superfamily phosphohydrolase; InterPro IPR006674:IPR003607; KEGG: sli:Slin_6492 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region; SPTR: Metal dependent phosphohydrolase YP_004654407.1 PFAM: HD domain; COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; InterPro IPR007691:IPR020573:IPR001451; KEGG: sli:Slin_6493 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat; SPTR: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_004654408.1 PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Bacterial transferase hexapeptide (three repeats); TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; COGs: COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; HAMAP: (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; UDP-3-O-acyl N-acetylglucosamine deacetylase; InterPro IPR004463:IPR013114:IPR010084; KEGG: sli:Slin_6494 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; SPTR: Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase FabZ; TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; UDP-3-O-acyl N-acetylglucosamine deacetylase YP_004654409.1 PFAM: FabA-like domain; UDP-3-O-acyl N-acetylglycosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ; COGs: COG1043 Acyl-(acyl carrier protein); InterPro IPR001451:IPR010137; KEGG: sli:Slin_6495 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosa MinE O-acyltransferase; PRIAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgluc osamineO-acyltransferase; SPTR: Acyl-(Acyl-carrier-protein)--UDP-N-acetylglucosa mine O-acyltransferase; TIGRFAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgl ucosamineO-acyltransferase YP_004654410.1 PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: ote:Oter_1907 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase YP_004654411.1 PFAM: Polysaccharide deacetylase; InterPro IPR003088:IPR013428:IPR013427; KEGG: pbs:Plabr_3239 membrane-bound dehydrogenase domain protein; PFAM: Cytochrome c, class I; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; haem-binding region YP_004654412.1 PFAM: Cytochrome c; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type; COGs: COG0031 Cysteine synthase; InterPro IPR001926:IPR005858:IPR005856; KEGG: sli:Slin_5857 cysteine synthase B; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Cysteine synthase; SPTR: Cysteine synthase; TIGRFAM: Cysteine synthase B; Cysteine synthase K/M YP_004654413.1 PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthases; cysteine synthase B; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; KEGG: sli:Slin_5446 polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein YP_004654414.1 InterPro IPR020018; KEGG: sli:Slin_5969 gliding motility-associated lipoprotein GldH; SPTR: Gliding motility-associated lipoprotein GldH; TIGRFAM: Gliding motility-associated lipoprotein, GldH YP_004654415.1 TIGRFAM: gliding motility-associated lipoprotein GldH; COGs: COG2802 Uncharacterized protein similar to the N-terminal domain of Lon protease; InterPro IPR003111; KEGG: sli:Slin_5613 peptidase S16; PFAM: Peptidase S16, lon N-terminal; SMART: Peptidase S16, lon N-terminal; SPTR: Peptidase S16 lon domain protein YP_004654416.1 PFAM: ATP-dependent protease La (LON) domain; COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125; KEGG: zpr:ZPR_1903 guanine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; PRIAM: Guanine deaminase; SPTR: Guanine deaminase YP_004654417.1 PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: aba:Acid345_4345 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; PRIAM: Sarcosine oxidase; SPTR: FAD dependent oxidoreductase YP_004654418.1 PFAM: FAD dependent oxidoreductase; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: cts:Ctha_2148 group 1 glycosyl transferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyltransferase YP_004654419.1 PFAM: Glycosyl transferases group 1; COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: sli:Slin_0708 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein YP_004654420.1 PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_6620 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; PRIAM: Glucomannan 4-beta-mannosyltransferase; SPTR: Glycosyl transferase 2 YP_004654421.1 PFAM: Glycosyl transferase 2; COGs: COG0227 Ribosomal protein L28; HAMAP: Ribosomal protein L28; InterPro IPR001383; KEGG: sli:Slin_6556 ribosomal protein L28; PFAM: Ribosomal protein L28; SPTR: 50S ribosomal protein L28; TIGRFAM: Ribosomal protein L28 YP_004654422.1 PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: dfe:Dfer_5645 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; SPTR: Two component transcriptional regulator, LytTR family YP_004654423.1 PFAM: LytTr DNA-binding domain; COGs: COG2255 Holliday junction resolvasome helicase subunit; HAMAP: DNA helicase, Holliday junction RuvB type; InterProIPR004605:IPR008824:IPR003959:IPR008823:IPR 003593; KEGG: dfe:Dfer_3690 Holliday junction DNA helicase RuvB; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: Holliday junction ATP-dependent DNA helicase ruvB; TIGRFAM: DNA helicase, Holliday junction RuvB type YP_004654424.1 PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit; KEGG: ppd:Ppro_2108 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004654425.1 PFAM: PKD domain; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sli:Slin_3491 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004654426.1 PFAM: Xylose isomerase-like TIM barrel; InterPro IPR011701; KEGG: sli:Slin_2840 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004654427.1 PFAM: Major Facilitator Superfamily; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: sli:Slin_2839 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004654428.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_2838 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004654429.1 PFAM: short chain dehydrogenase; COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155; KEGG: sli:Slin_2837 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; SPTR: NADH:flavin oxidoreductase/NADH oxidase YP_004654430.1 PFAM: NADH:flavin oxidoreductase / NADH oxidase; InterPro IPR010905; KEGG: sli:Slin_2836 hypothetical protein; PFAM: Glycosyl hydrolase, family 88; SPTR: uncharacterized protein YP_004654431.1 PFAM: Glycosyl Hydrolase 88; COGs: COG2610 H+/gluconate symporter and related permease; InterPro IPR003474; KEGG: cdf:CD2812 gluconate permease; PFAM: Gluconate transporter; SPTR: gluconate permease; TIGRFAM: Gluconate transporter YP_004654432.1 PFAM: GntP family permease; TIGRFAM: gluconate transporter; KEGG: dfe:Dfer_2216 hypothetical protein; SPTR: uncharacterized protein YP_004654433.1 PFAM: Polysaccharide pyruvyl transferase; COGs: COG2327 conserved hypothetical protein; KEGG: phe:Phep_2607 hypothetical protein; SPTR: uncharacterized protein YP_004654434.1 PFAM: Polysaccharide pyruvyl transferase; InterPro IPR012944; KEGG: dfe:Dfer_2218 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein YP_004654435.1 PFAM: SusD family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_2219 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004654436.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: sli:Slin_6285 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR YP_004654437.1 PFAM: FecR protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284:IPR014327; KEGG: sli:Slin_6284 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70 YP_004654438.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: pbs:Plabr_3889 lipase/esterase; SPTR: Probable lipase/esterase YP_004654439.1 PFAM: alpha/beta hydrolase fold; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR013428; KEGG: dfe:Dfer_4984 membrane-bound dehydrogenase domain protein; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase YP_004654440.1 PFAM: Cytochrome c; Membrane bound L-sorbosone dehydrogenase; TIGRFAM: membrane-bound dehydrogenase domain; KEGG: sli:Slin_1261 hypothetical protein; SPTR: uncharacterized protein YP_004654441.1 PFAM: Trehalose utilisation; InterPro IPR012944; KEGG: dfe:Dfer_4718 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein YP_004654442.1 PFAM: SusD family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR011662:IPR012910:IPR000531; KEGG: dfe:Dfer_4717 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004654443.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: sli:Slin_6566 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR YP_004654444.1 PFAM: FecR protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_6565 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004654445.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: dfe:Dfer_0191 hypothetical protein; SPTR: uncharacterized protein YP_004654447.1 KEGG: dfe:Dfer_4617 hypothetical protein; SPTR: uncharacterized protein YP_004654449.1 COGs: COG3622 Hydroxypyruvate isomerase; InterPro IPR012307:IPR006311; KEGG: sli:Slin_3461 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004654450.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: sli:Slin_3971 hypothetical protein; SPTR: uncharacterized protein YP_004654451.1 InterPro IPR001647; KEGG: dfe:Dfer_2561 transcriptional regulator, TetR family; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family YP_004654452.1 PFAM: Bacterial regulatory proteins, tetR family; COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839; KEGG: dfe:Dfer_2557 glycine C-acetyltransferase; PFAM: Aminotransferase, class I/II; PRIAM: Glycine C-acetyltransferase; SPTR: Glycine C-acetyltransferase YP_004654453.1 PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase; KEGG: dfe:Dfer_2556 hypothetical protein; SPTR: uncharacterized protein YP_004654454.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_2555 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase YP_004654455.1 PFAM: NAD dependent epimerase/dehydratase; KEGG: dfe:Dfer_2554 hypothetical protein; SPTR: uncharacterized protein YP_004654456.1 COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); KEGG: dfe:Dfer_2553 nucleoside-diphosphate-sugar pyrophosphorylase; SPTR: nucleoside-diphosphate-sugar pyrophosphorylase YP_004654457.1 PFAM: Nucleotidyl transferase; KEGG: dfe:Dfer_2552 hypothetical protein; SPTR: uncharacterized protein YP_004654458.1 COGs: COG0558 Phosphatidylglycerophosphate synthase; InterPro IPR000462; KEGG: dfe:Dfer_2551 CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-alcohol phosphatidyltransferase YP_004654459.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dfe:Dfer_2550 hypothetical protein; SPTR: uncharacterized protein YP_004654460.1 PFAM: Uncharacterised protein family (UPF0104); COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834:IPR006402; KEGG: dfe:Dfer_2549 haloacid dehalogenase domain protein hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Haloacid dehalogenase domain protein hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3 YP_004654461.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; COGs: COG0524 Sugar kinase ribokinase; InterPro IPR011611; KEGG: dfe:Dfer_2548 PfkB domain protein; PFAM: Carbohydrate/purine kinase; SPTR: PfkB domain protein YP_004654462.1 PFAM: pfkB family carbohydrate kinase; KEGG: dfe:Dfer_2547 hypothetical protein; SPTR: uncharacterized protein YP_004654463.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_0042 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein YP_004654464.1 PFAM: Outer membrane efflux protein; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_0041 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD YP_004654465.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036:IPR004764; KEGG: dfe:Dfer_0040 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: Acriflavin resistance protein; SPTR: Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1 YP_004654466.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; InterPro IPR019861; KEGG: dfe:Dfer_3688 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes YP_004654467.1 PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein YP_004654468.1 InterPro IPR007842; KEGG: geb:GM18_2404 HEPN domain-containing protein; PFAM: HEPN; SPTR: HEPN domain protein YP_004654469.1 PFAM: HEPN domain; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: sli:Slin_4817 sigma 54 interacting domain protein; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Sigma 54 interacting domain protein YP_004654470.1 PFAM: ABC transporter; KEGG: sli:Slin_5161 hypothetical protein; SPTR: uncharacterized protein YP_004654471.1 COGs: COG1435 Thymidine kinase; HAMAP: Thymidine kinase, subgroup; InterPro IPR020634:IPR001267; KEGG: dfe:Dfer_4396 thymidine kinase; PFAM: Thymidine kinase; PRIAM: Thymidine kinase; SPTR: Thymidine kinase YP_004654472.1 PFAM: Thymidine kinase; KEGG: pdi:BDI_1307 hypothetical protein; SPTR: uncharacterized protein YP_004654473.1 KEGG: shg:Sph21_2321 hypothetical protein; SPTR: uncharacterized protein YP_004654474.1 PFAM: Protein of unknown function (DUF1044) YP_004654475.1 InterPro IPR005046:IPR011889; KEGG: dfe:Dfer_0502 lipoprotein; PFAM: Protein of unknown function DUF285, lipoprotein predicted; SPTR: Lipoprotein; TIGRFAM: Bacterial surface protein 26-residue repeat YP_004654476.1 PFAM: Mycoplasma protein of unknown function, DUF285; TIGRFAM: bacterial surface protein 26-residue repeat; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR011659:IPR001375; KEGG: sli:Slin_2704 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein YP_004654477.1 PFAM: Prolyl oligopeptidase; WD40-like Beta Propeller Repeat; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650; KEGG: fbc:FB2170_01821 peptidase; PFAM: Peptidase M20, dimerisation; Peptidase M20; SPTR: Peptidase M20 YP_004654478.1 PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; KEGG: dfe:Dfer_2429 GtrA family protein; SPTR: GtrA family protein YP_004654479.1 PFAM: GtrA-like protein; COGs: COG4219 Antirepressor regulating drug resistance predicted signal transduction N-terminal membrane component; InterPro IPR008756; KEGG: sli:Slin_5187 peptidase M56 BlaR1; PFAM: Peptidase M56, BlaR1; SPTR: Peptidase M56 BlaR1 YP_004654480.1 PFAM: BlaR1 peptidase M56; COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: sli:Slin_5186 CopY family transcriptional regulator; PFAM: Penicillinase repressor; SPTR: Transcriptional repressor, CopY family YP_004654481.1 PFAM: Penicillinase repressor; COGs: COG0014 Gamma-glutamyl phosphate reductase; HAMAP: Glutamate-5-semialdehyde dehydrogenase; InterPro IPR012134:IPR000965; KEGG: sli:Slin_0425 gamma-glutamyl phosphate reductase; PRIAM: Glutamate-5-semialdehyde dehydrogenase; SPTR: Gamma-glutamyl phosphate reductase; TIGRFAM: Gamma-glutamyl phosphate reductase GPR YP_004654482.1 PFAM: Aldehyde dehydrogenase; TIGRFAM: gamma-glutamyl phosphate reductase; InterPro IPR000834; KEGG: sli:Slin_5441 hypothetical protein; PFAM: Peptidase M14, carboxypeptidase A; SPTR: uncharacterized protein YP_004654483.1 PFAM: Zinc carboxypeptidase; KEGG: chu:CHU_0434 hypothetical protein; SPTR: Fjo21 YP_004654484.1 PFAM: DoxX; COGs: COG0414 Panthothenate synthetase; HAMAP: Pantoate-beta-alanine ligase; InterPro IPR003721; KEGG: sli:Slin_4462 pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; SPTR: Pantothenate synthetase; TIGRFAM: Pantoate-beta-alanine ligase YP_004654485.1 PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; COGs: COG0853 Aspartate 1-decarboxylase; HAMAP: Aspartate decarboxylase; InterPro IPR003190; KEGG: sli:Slin_3464 aspartate 1-decarboxylase; PFAM: Aspartate decarboxylase; PRIAM: Aspartate 1-decarboxylase; SPTR: Aspartate 1-decarboxylase; TIGRFAM: Aspartate decarboxylase YP_004654486.1 PFAM: Aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase; InterPro IPR005242; KEGG: dfe:Dfer_4554 integral membrane protein; SPTR: Integral membrane protein YP_004654487.1 PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein; COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR004820:IPR011914:IPR004821; KEGG: dfe:Dfer_4553 RfaE bifunctional protein; PFAM: Cytidylyltransferase; SPTR: RfaE bifunctional protein; TIGRFAM: RfaE bifunctional protein, domain II; Cytidyltransferase-related YP_004654488.1 PFAM: Cytidylyltransferase; TIGRFAM: rfaE bifunctional protein, domain II; cytidyltransferase-related domain; COGs: COG2738 Zn-dependent protease; InterPro IPR007395; KEGG: lby:Lbys_0458 peptidase membrane zinc metallopeptidase; PFAM: Peptidase, membrane zinc metallopeptidase, SPTR: Peptidase membrane zinc metallopeptidase YP_004654489.1 PFAM: neutral zinc metallopeptidase; InterPro IPR000601; KEGG: dfe:Dfer_2684 PKD domain containing protein; PFAM: PKD; SMART: PKD; SPTR: PKD domain containing protein YP_004654490.1 COGs: COG0345 Pyrroline-5-carboxylate reductase; InterPro IPR004455:IPR000304; KEGG: sli:Slin_5956 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; PRIAM: Pyrroline-5-carboxylate reductase; SPTR: Pyrroline-5-carboxylate reductase; TIGRFAM: Delta 1-pyrroline-5-carboxylate reductase YP_004654491.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR011659:IPR001375; KEGG: phe:Phep_2588 peptidase S9 prolyl oligopeptidase active site domain-containing protein; SPTR: Probable acylaminoacyl-peptidase YP_004654492.1 PFAM: Prolyl oligopeptidase; InterPro IPR001387; KEGG: sli:Slin_1627 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: XRE family transcriptional regulator YP_004654493.1 PFAM: Helix-turn-helix; COGs: COG1819 Glycosyl transferase related to UDP-glucuronosyltransferase; InterPro IPR007235; KEGG: dfe:Dfer_5248 glycosyltransferase 28 domain; PFAM: Glycosyl transferase, family 28, C-terminal; SPTR: Glycosyltransferase, MGT family YP_004654494.1 PFAM: Glycosyltransferase 28 C-terminal domain; KEGG: sli:Slin_0773 peptidase C39 bacteriocin processing; SPTR: Peptidase C39 bacteriocin processing YP_004654495.1 PFAM: Peptidase C39 family; KEGG: dfe:Dfer_2224 hypothetical protein; SPTR: uncharacterized protein YP_004654498.1 Prodigal; This gene is disrupted by insertion of repetitive element; manually curated YP_004654499.1 PFAM: Rhodopirellula transposase; 'Paired box' domain YP_004654500.1 KEGG: pmo:Pmob_0677 hypothetical protein; SPTR: uncharacterized protein YP_004654501.1 TIGRFAM: radical SAM additional 4Fe4S-binding domain YP_004654502.1 COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR005074:IPR001140:IPR003439:IPR003593; KEGG: sli:Slin_0781 ABC transporter; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein YP_004654503.1 PFAM: ABC transporter; ABC transporter transmembrane region; Peptidase C39 family; InterPro IPR006143; KEGG: sli:Slin_0782 hypothetical protein; PFAM: Secretion protein HlyD; SPTR: uncharacterized protein YP_004654504.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR011703; KEGG: sli:Slin_2939 ATPase AAA; PFAM: ATPase associated with various cellular activities, AAA-3; SPTR: ATPase associated with various cellular activities AAA_3 YP_004654505.1 PFAM: ATPase associated with various cellular activities (AAA); COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119; KEGG: bvu:BVU_3813 transcriptional regulator; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; SPTR: uncharacterized protein; manually curated YP_004654506.1 PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: mtt:Ftrac_0426 DNA-cytosine methyltransferase; PFAM: DNA methylase, C-5 cytosine-specific; PRIAM: DNA (cytosine-5-)-methyltransferase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA methylase, C-5 cytosine-specific YP_004654507.1 PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm) YP_004654508.1 Prodigal; manually curated YP_004654509.1 PFAM: Beta-lactamase; COGs: COG3394 conserved hypothetical protein; InterPro IPR006879; KEGG: sli:Slin_1052 YdjC family protein; PFAM: YdjC-like protein; SPTR: YdjC family protein YP_004654510.1 PFAM: YdjC-like protein; KEGG: sli:Slin_2577 hypothetical protein; SPTR: uncharacterized protein YP_004654511.1 PFAM: Glycosyl transferase 8; InterPro IPR001173; KEGG: sli:Slin_2580 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004654512.1 PFAM: Glycosyl transferase 2; COGs: COG0859 ADP-heptose:LPS heptosyltransferase; KEGG: sli:Slin_0408 ADP-heptose:LPS heptosyltransferase-like protein; SPTR: ADP-heptose:LPS heptosyltransferase-like protein YP_004654513.1 PFAM: Glycosyltransferase 9 (heptosyltransferase); KEGG: sli:Slin_2579 hypothetical protein; SPTR: uncharacterized protein YP_004654514.1 COGs: COG0056 F0F1-type ATP synthase alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; InterPro IPR005294:IPR004100:IPR000194:IPR000793; KEGG: lby:Lbys_1612 ATP synthase f1 subcomplex alpha subunit; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; SPTR: ATP synthase subunit alpha; TIGRFAM: ATPase, F1 complex, alpha subunit YP_004654515.1 PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain; ATP synthase alpha/beta chain, C terminal domain; TIGRFAM: proton translocating ATP synthase, F1 alpha subunit; KEGG: cyp:PCC8801_2037 hypothetical protein; SPTR: uncharacterized protein YP_004654516.1 COGs: COG0224 F0F1-type ATP synthase gamma subunit; HAMAP: ATP synthase gamma chain; InterPro IPR000131; KEGG: dfe:Dfer_4631 ATP synthase F1, gamma subunit; PFAM: ATPase, F1 complex, gamma subunit; SPTR: ATP synthase gamma chain; TIGRFAM: ATPase, F1 complex, gamma subunit YP_004654517.1 PFAM: ATP synthase; TIGRFAM: ATP synthase, F1 gamma subunit; KEGG: sli:Slin_3387 hypothetical protein; SPTR: uncharacterized protein YP_004654518.1 Prodigal; manually curated YP_004654519.1 KEGG: sli:Slin_6357 hypothetical protein; SPTR: uncharacterized protein YP_004654521.1 Prodigal; manually curated YP_004654522.1 Prodigal; manually curated YP_004654523.1 PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_004654524.1 COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094:IPR004113; KEGG: dfe:Dfer_3155 D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; PRIAM: D-lactate dehydrogenase (cytochrome); SPTR: D-lactate dehydrogenase (Cytochrome) YP_004654525.1 PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; COGs: COG2264 Ribosomal protein L11 methylase; HAMAP: Ribosomal protein L11 methyltransferase; InterPro IPR010456; KEGG: sli:Slin_5617 ribosomal L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase; SPTR: Ribosomal protein L11 methyltransferase YP_004654526.1 PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; KEGG: sli:Slin_5684 epimerase; SPTR: Epimerase YP_004654527.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_5961 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004654528.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG0812 UDP-N-acetylmuramate dehydrogenase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; InterPro IPR003170:IPR006094:IPR011601; KEGG: sli:Slin_5155 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal; SPTR: UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase YP_004654529.1 PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR001678; KEGG: dfe:Dfer_1088 Fmu (Sun) domain protein; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; SPTR: Fmu (Sun) domain protein YP_004654530.1 PFAM: NOL1/NOP2/sun family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB; KEGG: sli:Slin_3058 hypothetical protein; SPTR: uncharacterized protein YP_004654531.1 KEGG: dfe:Dfer_3243 hypothetical protein; SPTR: uncharacterized protein YP_004654532.1 COGs: COG2041 Sulfite oxidase; InterPro IPR006311:IPR000572:IPR005066; KEGG: sli:Slin_3624 oxidoreductase molybdopterin binding protein; PFAM: Oxidoreductase, molybdopterin binding; Moybdenum cofactor oxidoreductase, dimerisation; PRIAM: Sulfite oxidase; SPTR: Oxidoreductase molybdopterin binding protein YP_004654533.1 PFAM: Mo-co oxidoreductase dimerisation domain; Oxidoreductase molybdopterin binding domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839; KEGG: sli:Slin_6350 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; SPTR: Aminotransferase class I and II YP_004654534.1 PFAM: Aminotransferase class I and II; KEGG: sli:Slin_5747 hypothetical protein; SPTR: uncharacterized protein YP_004654535.1 InterPro IPR000835; KEGG: sli:Slin_4426 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family YP_004654536.1 PFAM: MarR family; InterPro IPR001647; KEGG: dfe:Dfer_3428 transcriptional regulator, TetR family; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family YP_004654537.1 PFAM: Bacterial regulatory proteins, tetR family; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_5506 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein YP_004654538.1 PFAM: Outer membrane efflux protein; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_3430 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD YP_004654539.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: sli:Slin_5504 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein YP_004654540.1 PFAM: AcrB/AcrD/AcrF family; COGs: COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; InterPro IPR002579; KEGG: fjo:Fjoh_0270 methionine-R-sulfoxide reductase; PFAM: Methionine sulphoxide reductase B; PRIAM: Peptide-methionine (R)-S-oxide reductase; SPTR: Methionine-R-sulfoxide reductase; TIGRFAM: Methionine sulphoxide reductase B YP_004654541.1 PFAM: SelR domain; TIGRFAM: methionine-R-sulfoxide reductase; COGs: COG4634 conserved hypothetical protein; KEGG: dfe:Dfer_5087 hypothetical protein; SPTR: uncharacterized protein YP_004654542.1 PFAM: Protein of unknown function DUF82; COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: dfe:Dfer_5088 protein of unknown function DUF433; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein YP_004654543.1 PFAM: Protein of unknown function (DUF433); COGs: COG3358 conserved hypothetical protein; InterPro IPR012467; KEGG: sli:Slin_6369 hypothetical protein; PFAM: Protein of unknown function DUF1684; SPTR: uncharacterized protein YP_004654544.1 PFAM: Protein of unknown function (DUF1684); KEGG: sli:Slin_1343 hypothetical protein; SPTR: uncharacterized protein YP_004654545.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR000014:IPR013655:IPR013767:IPR003661:IPR 003594:IPR001610:IPR003018; KEGG: mtt:Ftrac_0408 pas/pac sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold; PAS fold-3; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAC motif; PAS; GAF; SPTR: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS YP_004654546.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789; KEGG: cao:Celal_1932 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein YP_004654547.1 PFAM: Response regulator receiver domain; COGs: COG0784 FOG: CheY-like receiver; InterPro IPR000014:IPR001789:IPR013655:IPR003661; KEGG: mtt:Ftrac_2272 pas/pac sensor protein; PFAM: Signal transduction response regulator, receiver region; PAS fold-3; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: Signal transduction response regulator, receiver region; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: PAS/PAC sensor protein; TIGRFAM: PAS YP_004654548.1 PFAM: Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; InterPro IPR001789; KEGG: mtt:Ftrac_2271 response regulator receiver; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver YP_004654549.1 PFAM: Response regulator receiver domain; COGs: COG1725 transcriptional regulator protein; InterPro IPR000524; KEGG: sli:Slin_3237 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; SPTR: Transcriptional regulator, GntR family YP_004654550.1 PFAM: Bacterial regulatory proteins, gntR family; COGs: COG1179 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 1; InterPro IPR000594; KEGG: psn:Pedsa_2841 UBA/ThiF-type NAD/FAD binding protein; PFAM: UBA/THIF-type NAD/FAD binding fold; SPTR: UBA/THIF-type NAD/FAD binding protein YP_004654551.1 PFAM: ThiF family; COGs: COG0084 Mg-dependent DNase; InterPro IPR001130; KEGG: phe:Phep_4182 TatD-related deoxyribonuclease; PFAM: Deoxyribonuclease, TatD-related; SPTR: TatD-related deoxyribonuclease YP_004654552.1 PFAM: TatD related DNase; COGs: COG2153 acyltransferase; InterPro IPR000182; KEGG: lby:Lbys_1165 gcn5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase YP_004654553.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG1301 Na+/H+-dicarboxylate symporter; InterPro IPR001991; KEGG: dfe:Dfer_3533 sodium:dicarboxylate symporter; PFAM: Sodium:dicarboxylate symporter; SPTR: Sodium:dicarboxylate symporter YP_004654554.1 PFAM: Sodium:dicarboxylate symporter family; KEGG: sli:Slin_3425 hypothetical protein; SPTR: uncharacterized protein YP_004654555.1 COGs: COG0679 permease; InterPro IPR004776; KEGG: wvi:Weevi_0924 auxin efflux carrier; PFAM: Auxin efflux carrier; SPTR: uncharacterized protein YP_004654556.1 PFAM: Membrane transport protein; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR011662:IPR012910:IPR000531; KEGG: sli:Slin_5287 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; SPTR: TonB-dependent receptor YP_004654557.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: sli:Slin_4781 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR YP_004654558.1 PFAM: FecR protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR014327:IPR007627:IPR013249; KEGG: sli:Slin_4780 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70 YP_004654559.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; InterPro IPR002509; KEGG: tgr:Tgr7_2375 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: uncharacterized protein YP_004654560.1 PFAM: Polysaccharide deacetylase; COGs: COG0627 esterase; InterPro IPR000801; KEGG: sli:Slin_6266 esterase; PFAM: esterase; SPTR: esterase YP_004654561.1 PFAM: esterase; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR006311:IPR012307; KEGG: dfe:Dfer_3269 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004654562.1 PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; KEGG: cyj:Cyan7822_1092 hypothetical protein; SPTR: uncharacterized protein YP_004654563.1 InterPro IPR007367; KEGG: rrs:RoseRS_0655 hypothetical protein; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein YP_004654564.1 PFAM: Protein of unknown function (DUF433); InterPro IPR006311:IPR010869; KEGG: dfe:Dfer_0332 protein of unknown function DUF1501; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein YP_004654565.1 PFAM: Protein of unknown function (DUF1501); InterPro IPR011429:IPR011444; KEGG: dfe:Dfer_0333 protein of unknown function DUF1549; PFAM: Protein of unknown function DUF1549; Cytochrome C, Planctomycete; SPTR: uncharacterized protein YP_004654566.1 PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553); COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: zpr:ZPR_4364 bacterial regulatory helix-turn-helix protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004654567.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR013216; KEGG: chu:CHU_1562 SAM-dependent methyltransferase; PFAM: Methyltransferase type 11; SPTR: SAM-dependent methyltransferase YP_004654568.1 PFAM: Methyltransferase domain; KEGG: sli:Slin_0320 hypothetical protein; SPTR: uncharacterized protein YP_004654569.1 PFAM: Predicted nucleotide-binding protein, containing PIN domain; KEGG: sli:Slin_0321 hypothetical protein; SPTR: uncharacterized protein YP_004654570.1 COGs: COG3622 Hydroxypyruvate isomerase; InterPro IPR012307; KEGG: sli:Slin_5812 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004654571.1 PFAM: Xylose isomerase-like TIM barrel YP_004654572.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: lby:Lbys_1107 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SPTR: Integral membrane sensor signal transduction histidine kinase YP_004654573.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; KEGG: sli:Slin_1749 hypothetical protein; SPTR: uncharacterized protein YP_004654574.1 COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: sli:Slin_1750 O-succinylbenzoic acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: o-succinylbenzoate--CoA ligase; SPTR: O-succinylbenzoic acid--CoA ligase YP_004654575.1 PFAM: AMP-binding enzyme; InterPro IPR017941; KEGG: sli:Slin_4885 Rieske (2Fe-2S) iron-sulphur domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Rieske (2Fe-2S) iron-sulphur domain protein YP_004654576.1 PFAM: Rieske [2Fe-2S] domain; InterPro IPR014867; KEGG: sli:Slin_3459 spore coat protein CotH; PFAM: Spore coat protein CotH; SPTR: Spore coat protein CotH YP_004654577.1 PFAM: CotH protein; InterPro IPR007409; KEGG: sli:Slin_0367 hypothetical protein; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; SPTR: uncharacterized protein YP_004654578.1 COGs: COG0775 Nucleoside phosphorylase; InterPro IPR010944:IPR000845; KEGG: sli:Slin_0368 AMP nucleosidase; PFAM: Nucleoside phosphorylase; SPTR: AMP nucleosidase; TIGRFAM: AMP nucleosidase YP_004654579.1 PFAM: Phosphorylase superfamily; TIGRFAM: AMP nucleosidase, InterPro IPR001440:IPR019734; KEGG: sli:Slin_0369 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein YP_004654580.1 PFAM: Tetratricopeptide repeat; COGs: COG1575 1 4-dihydroxy-2-naphthoate octaprenyltransferase; InterPro IPR004657:IPR000537; KEGG: dfe:Dfer_2681 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; SPTR:1,4-dihydroxy-2-naphthoateoctaprenyltransferas e; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_004654581.1 PFAM: UbiA prenyltransferase; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_004654582.1 PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; HAMAP:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-di aminopimelateligase; InterPro IPR005761:IPR000713:IPR013221:IPR004101; KEGG: sli:Slin_4739 UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelateligase; SPTR: UDP-N-acetylmuramyl-tripeptide synthetase; TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelateligase YP_004654583.1 PFAM: Mur ligase, glutamate ligase domain; Mur ligase, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: dfe:Dfer_4116 hypothetical protein; PFAM: Conserved hypothetical protein CHP00730; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00730 YP_004654584.1 PFAM: Possible lysine decarboxylase; TIGRFAM: TIGR00725 family protein; TIGR00730 family protein; COGs: COG1975 Xanthine and CO dehydrogenase maturation factor XdhC/CoxF family; InterPro IPR003777; KEGG: sli:Slin_5428 xanthine dehydrogenase; PFAM: XdhC- CoxI; SPTR: Xanthine dehydrogenase YP_004654585.1 PFAM: XdhC and CoxI family; COGs: COG0303 Molybdopterin biosynthesis enzyme; InterPro IPR020817:IPR005110:IPR001453:IPR005111; KEGG: sli:Slin_2812 molybdenum cofactor synthesis protein; PFAM: MoeA, N-terminal region, domain I/II; Molybdopterin binding; MoeA, C-terminal, domain IV; SPTR: Molybdopterin biosynthesis protein MoeA; TIGRFAM: Molybdenum cofactor synthesis YP_004654586.1 PFAM: Probable molybdopterin binding domain; MoeA N-terminal region (domain I and II); MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain; InterPro IPR013346:IPR005144:IPR013509:IPR000788; KEGG: dfe:Dfer_3267 ribonucleoside-diphosphate reductase, alpha subunit; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal; ATP-cone; PRIAM: Ribonucleoside-diphosphate reductase; SPTR: Ribonucleoside-diphosphate reductase; TIGRFAM: Ribonucleoside-diphosphate reductase, alpha subunit YP_004654587.1 PFAM: Ribonucleotide reductase, all-alpha domain; ATP cone domain; Ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; COGs: COG0718 conserved hypothetical protein; HAMAP: Uncharacterised protein family UPF0133; InterPro IPR004401; KEGG: dfe:Dfer_4005 hypothetical protein; PFAM: Uncharacterised protein family UPF0133; SPTR: UPF0133 protein Dfer_4005; TIGRFAM: Uncharacterised protein family UPF0133 YP_004654588.1 PFAM: Uncharacterised BCR, YbaB family COG0718; TIGRFAM: DNA-binding protein, YbaB/EbfC family; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: sli:Slin_6387 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004654589.1 PFAM: Glycosyl transferase 2; COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753; KEGG: sli:Slin_5925 cell shape determining protein, MreB/Mrl family; PFAM: Cell shape determining protein MreB/Mrl; SPTR: Cell shape determining protein, MreB/Mrl family; TIGRFAM: Cell shape determining protein MreB/Mrl YP_004654590.1 PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family; COGs: COG1792 Cell shape-determining protein; InterPro IPR007221; KEGG: dfe:Dfer_3831 rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; SPTR: Rod shape-determining protein MreC YP_004654591.1 PFAM: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; KEGG: sli:Slin_5927 hypothetical protein; SPTR: uncharacterized protein YP_004654592.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_3829 RNA polymerase sigma factor RpoE; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004654593.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: dfe:Dfer_3828 hypothetical protein; SPTR: uncharacterized protein YP_004654594.1 TIGRFAM: anti-sigma factor, TIGR02949 family; COGs: COG0194 Guanylate kinase; HAMAP: Guanylate kinase, sub-group; InterPro IPR017665:IPR008144:IPR008145; KEGG: sli:Slin_5548 guanylate kinase; PFAM: Guanylate kinase; PRIAM: Guanylate kinase; SMART: Guanylate kinase/L-type calcium channel region; SPTR: Guanylate kinase; TIGRFAM: Guanylate kinase, sub-group YP_004654595.1 PFAM: Guanylate kinase; TIGRFAM: guanylate kinase; COGs: COG0492 Thioredoxin reductase; InterPro IPR013027; KEGG: dfe:Dfer_3374 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Ferredoxin--NADP(+) reductase; SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004654596.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: bacillithiol system thiol disulfide oxidoreductase, YpdA family; COGs: COG2939 Carboxypeptidase C (cathepsin A); InterPro IPR001563; KEGG: sli:Slin_3251 peptidase S10 serine carboxypeptidase; PFAM: Peptidase S10, serine carboxypeptidase; SPTR: Peptidase S10 serine carboxypeptidase YP_004654597.1 PFAM: Serine carboxypeptidase; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: fbc:FB2170_04350 hypothetical protein; PFAM: Beta-lactamase-related; SPTR: uncharacterized protein YP_004654598.1 PFAM: Beta-lactamase; InterPro IPR000866; KEGG: dfe:Dfer_0285 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_004654599.1 PFAM: AhpC/TSA family; COGs: COG1515 Deoxyinosine 3'endonuclease (endonuclease V); HAMAP: Endonuclease V; InterPro IPR007581; KEGG: dfe:Dfer_3087 deoxyribonuclease V; PFAM: Endonuclease V; PRIAM: Deoxyribonuclease V; SPTR: Endonuclease V YP_004654600.1 PFAM: Endonuclease V; KEGG: sli:Slin_6364 hypothetical protein; SPTR: uncharacterized protein YP_004654601.1 InterPro IPR001789; KEGG: dfe:Dfer_0372 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein YP_004654602.1 PFAM: Response regulator receiver domain YP_004654603.1 PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX; small GTP-binding protein domain; COGs: COG1073 Hydrolase of the alpha/beta superfamily; InterPro IPR000073; KEGG: fbc:FB2170_11196 hypothetical protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: uncharacterized protein YP_004654604.1 PFAM: lysophospholipase; KEGG: fbc:FB2170_11216 glyoxalase; SPTR: uncharacterized protein YP_004654605.1 COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650; KEGG: dfe:Dfer_4431 peptidase dimerisation domain protein; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: Succinyl-diaminopimelate desuccinylase; SPTR: Peptidase dimerisation domain protein YP_004654606.1 PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; InterPro IPR011551:IPR004518; KEGG: dfe:Dfer_4447 nucleoside triphosphate pyrophosphohydrolase; PFAM: NTP pyrophosphohydrolase MazG, catalytic core; SPTR: MazG family protein; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial YP_004654607.1 PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein; KEGG: sli:Slin_6006 hypothetical protein; SPTR: uncharacterized protein YP_004654608.1 KEGG: sli:Slin_2807 hypothetical protein; SPTR: uncharacterized protein YP_004654609.1 KEGG: sli:Slin_5997 hypothetical protein; SPTR: uncharacterized protein YP_004654610.1 PFAM: Protein of unknown function, DUF481; InterPro IPR009288; KEGG: sli:Slin_5497 AIG2 family protein; PFAM: AIG2-like; SPTR: AIG2 family protein YP_004654611.1 PFAM: AIG2-like family; KEGG: sli:Slin_0266 hypothetical protein; SPTR: uncharacterized protein YP_004654612.1 KEGG: lby:Lbys_1691 hypothetical protein; SPTR: uncharacterized protein YP_004654613.1 PFAM: Protein of unknown function (DUF2853); COGs: COG4365 conserved hypothetical protein; HAMAP: UPF0747 protein; InterPro IPR011199; KEGG: dfe:Dfer_3548 hypothetical protein; PFAM: Uncharacterised conserved protein UCP012535; SPTR: UPF0747 protein Dfer_3548 YP_004654614.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2317); TIGRFAM: bacillithiol biosynthesis cysteine-adding enzyme BshC; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: mtt:Ftrac_3360 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004654615.1 PFAM: Glycosyl transferase 2; KEGG: sjp:SJA_C1-23170 hypothetical protein; SPTR: uncharacterized protein YP_004654616.1 COGs: COG0527 Aspartokinase; InterPro IPR001341:IPR001048; KEGG: dfe:Dfer_3817 aspartate kinase; PFAM: Aspartate/glutamate/uridylate kinase; SPTR: Aspartokinase; TIGRFAM: Aspartate kinase region YP_004654617.1 PFAM: Amino acid kinase; TIGRFAM: aspartate kinase; COGs: COG1943 Transposase and inactivated derivatives; KEGG: lby:Lbys_0121 hypothetical protein; SPTR: uncharacterized protein YP_004654618.1 PFAM: Transposase IS200 like; COGs: COG0172 Seryl-tRNA synthetase; InterPro IPR002317:IPR015866:IPR002314; KEGG: sli:Slin_5630 seryl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Seryl-tRNA synthetase, class IIa, N-terminal; PRIAM: Serine--tRNA ligase; SPTR: Seryl-tRNA synthetase; TIGRFAM: Seryl-tRNA synthetase, class IIa YP_004654619.1 PFAM: Seryl-tRNA synthetase N-terminal domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: seryl-tRNA synthetase; KEGG: bth:BT_4152 beta-galactosidase I; SPTR: uncharacterized protein; manually curated YP_004654620.1 PFAM: Glycosyl hydrolases family 43; COGs: COG3238 conserved hypothetical protein; InterPro IPR006750; KEGG: dfe:Dfer_4040 protein of unknown function DUF606; PFAM: Protein of unknown function DUF606; SPTR: uncharacterized protein YP_004654621.1 PFAM: Protein of unknown function, DUF606; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: sli:Slin_4653 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004654622.1 PFAM: Predicted permease; COGs: COG2815 conserved hypothetical protein; InterPro IPR005543; KEGG: sli:Slin_0294 PASTA domain containing protein; PFAM: PASTA; SMART: PASTA; SPTR: PASTA domain containing protein YP_004654623.1 PFAM: PASTA domain; KEGG: sli:Slin_0295 hypothetical protein; SPTR: uncharacterized protein YP_004654624.1 COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: dfe:Dfer_2923 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Rhodanese domain protein YP_004654625.1 PFAM: Rhodanese-like domain; COGs: COG0233 Ribosome recycling factor; HAMAP: Ribosome recycling factor, bacterial-like; InterPro IPR015998:IPR002661; KEGG: sli:Slin_2387 ribosome recycling factor; PFAM: Ribosome recycling factor; SPTR: Ribosome-recycling factor; TIGRFAM: Ribosome recycling factor YP_004654626.1 PFAM: Ribosome recycling factor; TIGRFAM: ribosome recycling factor; KEGG: cyc:PCC7424_4118 hypothetical protein; SPTR: uncharacterized protein YP_004654627.1 KEGG: cyc:PCC7424_4117 hypothetical protein; SPTR: uncharacterized protein YP_004654628.1 COGs: COG0528 Uridylate kinase; InterPro IPR015963:IPR001048; KEGG: dfe:Dfer_2998 uridylate kinase; PFAM: Aspartate/glutamate/uridylate kinase; PRIAM: UMP kinase; SPTR: Uridylate kinase; TIGRFAM: Uridylate kinase, bacteria YP_004654629.1 PFAM: Amino acid kinase; TIGRFAM: uridylate kinase; COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR000089; KEGG: sli:Slin_2390 biotin/lipoyl attachment domain-containing protein; PFAM: Biotin/lipoyl attachment; SPTR: Biotin/lipoyl attachment domain-containing protein YP_004654630.1 PFAM: Biotin-requiring enzyme; InterPro IPR000620; KEGG: sli:Slin_2391 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: uncharacterized protein YP_004654631.1 PFAM: EamA-like transporter family; KEGG: sli:Slin_6546 hypothetical protein; SPTR: uncharacterized protein YP_004654632.1 COGs: COG0793 Periplasmic protease; InterPro IPR011659:IPR005151; KEGG: lby:Lbys_3108 peptidase S41; PFAM: Peptidase S41; WD40-like Beta Propeller; SPTR: Peptidase S41 YP_004654633.1 PFAM: WD40-like Beta Propeller Repeat; Peptidase S41 YP_004654634.1 KEGG: dfe:Dfer_4933 hypothetical protein; SPTR: uncharacterized protein YP_004654635.1 COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR004602:IPR003439; KEGG: dfe:Dfer_3281 excinuclease ABC, A subunit; PFAM: ABC transporter-like; SPTR: Excinuclease ABC, A subunit; TIGRFAM: Excinuclease ABC, A subunit YP_004654636.1 PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit; KEGG: ppd:Ppro_1272 hypothetical protein; SPTR: uncharacterized protein YP_004654637.1 KEGG: dfe:Dfer_5688 hypothetical protein; SPTR: uncharacterized protein YP_004654638.1 COGs: COG2234 aminopeptidase; InterPro IPR003137:IPR007484; KEGG: sli:Slin_0518 glutamate carboxypeptidase II; PFAM: Peptidase M28; Protease-associated PA; PRIAM: Glutamate carboxypeptidase II; SPTR: Glutamate carboxypeptidase II YP_004654639.1 PFAM: PA domain; Peptidase M28; Transferrin receptor-like dimerisation domain; InterPro IPR011429:IPR011444; KEGG: sli:Slin_5453 hypothetical protein; PFAM: Protein of unknown function DUF1549; Cytochrome C, Planctomycete; SPTR: uncharacterized protein YP_004654640.1 PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553); InterPro IPR006311:IPR010869; KEGG: phe:Phep_2714 hypothetical protein; PFAM: Protein of unknown function DUF1501; SPTR: Twin-arginine translocation pathway signal YP_004654641.1 PFAM: Protein of unknown function (DUF1501); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG2013 conserved hypothetical protein; InterPro IPR002838; KEGG: dfe:Dfer_4264 protein of unknown function DUF124; PFAM: Protein of unknown function DUF124; SPTR: uncharacterized protein; TIGRFAM: Protein of unknown function DUF124 YP_004654642.1 PFAM: Protein of unknown function DUF124; TIGRFAM: TIGR00266 family protein; KEGG: sli:Slin_4892 hypothetical protein; SPTR: uncharacterized protein YP_004654644.1 COGs: COG0538 Isocitrate dehydrogenase; InterPro IPR004790:IPR001804; KEGG: dfe:Dfer_3730 isocitrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; PRIAM: Isocitrate dehydrogenase (NADP(+)); SPTR: Isocitrate dehydrogenase [NADP]; TIGRFAM: Isocitrate dehydrogenase NADP-dependent, eukaryotic YP_004654645.1 PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, eukaryotic type; KEGG: dfe:Dfer_3845 hypothetical protein; SPTR: uncharacterized protein YP_004654647.1 COGs: COG4115 conserved hypothetical protein; InterPro IPR009614; KEGG: bsa:Bacsa_1800 addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin, Txe/YoeB; SPTR: uncharacterized protein; TIGRFAM: Addiction module toxin, Txe/YoeB YP_004654648.1 PFAM: Plasmid encoded toxin Txe; TIGRFAM: toxin-antitoxin system, toxin component, Txe/YoeB family; addiction module toxin, RelE/StbE family; KEGG: sus:Acid_4693 hypothetical protein; SPTR: uncharacterized protein YP_004654649.1 COGs: COG1073 Hydrolase of the alpha/beta superfamily; InterPro IPR000073; KEGG: fbc:FB2170_11191 hypothetical protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Hydrolase with alpha/beta fold protein YP_004654650.1 PFAM: lysophospholipase YP_004654651.1 COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: cpi:Cpin_1928 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; PRIAM: Xylulokinase; SPTR: Carbohydrate kinase FGGY YP_004654652.1 PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain YP_004654653.1 COGs: COG4731 conserved hypothetical protein; InterPro IPR019223; KEGG: sli:Slin_1853 hypothetical protein; PFAM: Protein of unknown function DUF2147; SPTR: uncharacterized protein YP_004654654.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2147); COGs: COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain); InterPro IPR006367; KEGG: sli:Slin_0478 siroheme synthase; SPTR: Siroheme synthase; TIGRFAM: Sirohaem synthase, N-terminal YP_004654655.1 TIGRFAM: siroheme synthase, N-terminal domain; KEGG: sli:Slin_2835 hypothetical protein; SPTR: uncharacterized protein YP_004654656.1 COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: dfe:Dfer_2622 glycosyl transferase 9; PFAM: Glycosyl transferase, family 9; SPTR: Glycosyl transferase 9 YP_004654657.1 PFAM: Glycosyltransferase 9 (heptosyltransferase); COGs: COG1956 GAF domain-containing protein; KEGG: sli:Slin_5928 GAF domain-containing protein; SPTR: GAF domain-containing protein YP_004654658.1 manually curated YP_004654659.1 InterPro IPR002035; KEGG: dfe:Dfer_3846 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: von Willebrand factor type A YP_004654660.1 PFAM: von Willebrand factor type A domain; COGs: COG1404 Subtilisin-like serine protease; InterPro IPR010259:IPR000209; KEGG: sli:Slin_1710 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Proteinase inhibitor I9, subtilisin propeptide; PRIAM: Aqualysin 1; SPTR: Peptidase S8 and S53 subtilisin kexin sedolisin YP_004654661.1 PFAM: Peptidase inhibitor I9; Subtilase; InterPro IPR005632; KEGG: dfe:Dfer_3973 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH) YP_004654662.1 PFAM: Outer membrane protein (OmpH-like); KEGG: sli:Slin_5972 hypothetical protein; SPTR: uncharacterized protein YP_004654663.1 PFAM: PAP2 superfamily; manually curated YP_004654664.1 PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucosamine mutase; KEGG: dfe:Dfer_3940 hypothetical protein; SPTR: uncharacterized protein YP_004654665.1 COGs: COG2936 acyl esterase; InterPro IPR005674:IPR009894:IPR000383:IPR013736; KEGG: sli:Slin_0314 X-Pro dipeptidyl-peptidase domain protein; PFAM: Peptidase S15/CocE/NonD, C-terminal; Peptidase S15; Exported; SPTR: X-Pro dipeptidyl-peptidase domain protein; TIGRFAM: CocE/NonD hydrolase YP_004654666.1 PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: hydrolase, CocE/NonD family; KEGG: sli:Slin_0177 hypothetical protein; SPTR: Conserved repeat domain protein YP_004654667.1 COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154:IPR013149; KEGG: fbc:FB2170_14683 oxidoreductase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SPTR: Alcohol dehydrogenase zinc-binding domain protein YP_004654668.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; KEGG: sli:Slin_1168 hypothetical protein; SPTR: uncharacterized protein YP_004654669.1 InterPro IPR012910:IPR000531; KEGG: sli:Slin_1167 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004654670.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: sli:Slin_1165 hypothetical protein; SPTR: uncharacterized protein YP_004654671.1 InterPro IPR012910:IPR000531; KEGG: sli:Slin_1166 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: outer membrane protein, probably involved in nutrient binding YP_004654672.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG4330 membrane protein; InterPro IPR009793; KEGG: dfe:Dfer_4887 protein of unknown function DUF1361; PFAM: Protein of unknown function DUF1361; SPTR: uncharacterized protein YP_004654673.1 PFAM: Protein of unknown function (DUF1361); COGs: COG0818 Diacylglycerol kinase; InterPro IPR000829; KEGG: sli:Slin_1186 diacylglycerol kinase; PFAM: Diacylglycerol kinase, prokaryotic; SPTR: Diacylglycerol kinase YP_004654674.1 PFAM: Prokaryotic diacylglycerol kinase; KEGG: sli:Slin_1185 hypothetical protein; SPTR: uncharacterized protein YP_004654675.1 InterPro IPR001845; KEGG: sli:Slin_1184 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family YP_004654676.1 PFAM: Bacterial regulatory protein, arsR family; KEGG: sli:Slin_0198 hypothetical protein; SPTR: uncharacterized protein YP_004654677.1 KEGG: mtt:Ftrac_2315 TonB family protein; SPTR: TonB family protein YP_004654678.1 PFAM: Gram-negative bacterial tonB protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_0159 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004654679.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; InterPro IPR002035; KEGG: dfe:Dfer_0158 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: von Willebrand factor type A YP_004654680.1 PFAM: von Willebrand factor; von Willebrand factor type A domain; Domain of unknown function (DUF3520); KEGG: dfe:Dfer_2485 hypothetical protein; SPTR: uncharacterized protein YP_004654681.1 COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: dfe:Dfer_2590 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004654682.1 PFAM: short chain dehydrogenase; COGs: COG2020 protein-S-isoprenylcysteine methyltransferase; KEGG: dae:Dtox_2171 hypothetical protein; SPTR: uncharacterized protein YP_004654683.1 PFAM: NnrU protein; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sli:Slin_3274 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase YP_004654684.1 PFAM: Beta-lactamase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: sli:Slin_4717 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004654685.1 PFAM: Oxidoreductase, C-terminal alpha/beta domain; Oxidoreductase, NAD-binding Rossmann fold; COGs: COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; InterPro IPR010918; KEGG: sli:Slin_6005 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, C-terminal; PRIAM: Phosphoribosylformylglycinamidine cyclo-ligase; SPTR: Phosphoribosylformylglycinamidine cyclo-ligase YP_004654686.1 PFAM: AIR synthase related protein, C-terminal domain; KEGG: cyh:Cyan8802_4363 hypothetical protein; SPTR: uncharacterized protein YP_004654688.1 KEGG: ent:Ent638_1339 hypothetical protein; SPTR: Bacterial SH3 domain-containing protein YP_004654689.1 COGs: COG0013 Alanyl-tRNA synthetase; InterPro IPR002318:IPR018164:IPR012947:IPR003156; KEGG: dfe:Dfer_5667 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1; SPTR: Alanyl-tRNA synthetase; TIGRFAM: Alanyl-tRNA synthetase, class IIc YP_004654690.1 PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase YP_004654691.1 COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: sli:Slin_1830 glucose/sorbosone dehydrogenase; SPTR: Glucose/sorbosone dehydrogenase-like protein YP_004654692.1 PFAM: Glucose / Sorbosone dehydrogenase; KEGG: dfe:Dfer_4012 hypothetical protein; SPTR: uncharacterized protein YP_004654693.1 COGs: COG0628 permease; InterPro IPR002549; KEGG: dfe:Dfer_4013 protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; SPTR: uncharacterized protein YP_004654694.1 PFAM: Domain of unknown function DUF20; KEGG: sli:Slin_3273 hypothetical protein; SPTR: uncharacterized protein YP_004654695.1 PFAM: Planctomycete cytochrome C; TIGRFAM: conserved hypothetical protein, HNE_0200 family; COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterPro IPR003660:IPR013767:IPR003594:IPR000014; KEGG: sli:Slin_2346 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; PAS fold; SMART: ATP-binding region, ATPase-like; HAMP linker domain; PAS; SPTR: Two-component system sensor histidine kinase YP_004654696.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; KEGG: fjo:Fjoh_4705 hypothetical protein; SPTR: uncharacterized protein YP_004654697.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR002078:IPR002197:IPR003593; KEGG: sli:Slin_2347 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family YP_004654698.1 PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: sli:Slin_2348 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004654699.1 PFAM: Predicted permease; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dfe:Dfer_5612 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004654700.1 PFAM: Predicted permease; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: sli:Slin_2350 ABC transporter; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein YP_004654701.1 PFAM: ABC transporter; TIGRFAM: bacteriocin export ABC transporter, lactococcin 972 group; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_5610 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: exported outer membrane protein YP_004654702.1 PFAM: Outer membrane efflux protein; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_5609 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD YP_004654703.1 KEGG: cts:Ctha_0434 hypothetical protein; SPTR: uncharacterized protein YP_004654704.1 TIGRFAM: conserved hypothetical protein ( transposase or invertase); COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; InterPro IPR001041:IPR002888; KEGG: sli:Slin_1103 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; Ferredoxin; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: (2Fe-2S)-binding domain protein YP_004654705.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR006311:IPR008274; KEGG: sli:Slin_1104 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein YP_004654706.1 PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR006258:IPR013027:IPR004099; KEGG: lby:Lbys_2718 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; PRIAM: Dihydrolipoyl dehydrogenase; SPTR: Dihydrolipoyl dehydrogenase; TIGRFAM: Dihydrolipoamide dehydrogenase YP_004654707.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase; KEGG: sli:Slin_5307 hypothetical protein; SPTR: uncharacterized protein YP_004654708.1 KEGG: sli:Slin_1652 hypothetical protein; SPTR: uncharacterized protein YP_004654709.1 KEGG: cao:Celal_1650 hypothetical protein; SPTR: uncharacterized protein YP_004654710.1 KEGG: fps:FP0437 exopolyphosphatase; SPTR: Probable exopolyphosphatase YP_004654711.1 PFAM: Ppx/GppA phosphatase YP_004654712.1 KEGG: dfe:Dfer_4771 secreted protein; SPTR: Secreted protein YP_004654713.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: sli:Slin_0504 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: Response regulator receiver protein YP_004654714.1 PFAM: LytTr DNA-binding domain YP_004654715.1 COGs: COG1970 Large-conductance mechanosensitive channel; InterPro IPR001185; KEGG: sli:Slin_4749 large conductance mechanosensitive channel protein; PFAM: Large-conductance mechanosensitive channel; SPTR: Large conductance mechanosensitive channel protein; TIGRFAM: Large-conductance mechanosensitive channel YP_004654716.1 PFAM: Large-conductance mechanosensitive channel, MscL; TIGRFAM: large conductance mechanosensitive channel protein; KEGG: dfe:Dfer_1560 hypothetical protein; SPTR: uncharacterized protein YP_004654717.1 PFAM: Protein of unknown function (DUF3078); InterPro IPR008910; KEGG: sli:Slin_4747 TM helix repeat-containing protein; PFAM: Conserved TM helix; SPTR: Conserved TM helix repeat-containing protein YP_004654718.1 PFAM: Mechanosensitive ion channel; Conserved TM helix YP_004654719.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: lby:Lbys_2030 RNA polymerase, sigma-24 subunit, ecf subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004654720.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG0264 Translation elongation factor Ts; HAMAP: Elongation factor Ts; InterPro IPR001816:IPR000449:IPR014039; KEGG: sli:Slin_4744 translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal; SPTR: Elongation factor Ts; TIGRFAM: Translation elongation factor EFTs/EF1B YP_004654721.1 PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts; COGs: COG0052 Ribosomal protein S2; InterPro IPR005706:IPR001865; KEGG: sli:Slin_4743 ribosomal protein S2; PFAM: Ribosomal protein S2; SPTR: 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid YP_004654722.1 PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type; COGs: COG0103 Ribosomal protein S9; InterPro IPR000754; KEGG: sli:Slin_4742 ribosomal protein S9; PFAM: Ribosomal protein S9; SPTR: 30S ribosomal protein S9 YP_004654723.1 PFAM: Ribosomal protein S9/S16; COGs: COG0102 Ribosomal protein L13; InterPro IPR005823:IPR005822; KEGG: dfe:Dfer_3497 ribosomal protein L13; PFAM: Ribosomal protein L13; SPTR: 50S ribosomal protein L13; TIGRFAM: Ribosomal protein L13, bacterial-type YP_004654724.1 PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type; COGs: COG0029 Aspartate oxidase; InterPro IPR005288:IPR003953; KEGG: dfe:Dfer_4734 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; PRIAM: L-aspartate oxidase; SPTR: L-aspartate oxidase; TIGRFAM: L-aspartate oxidase YP_004654725.1 PFAM: domain; FAD binding domain; TIGRFAM: L-aspartate oxidase; KEGG: sli:Slin_3395 hypothetical protein; SPTR: uncharacterized protein YP_004654726.1 COGs: COG0684 Demethylmenaquinone methyltransferase; KEGG: dfe:Dfer_2455 demethylmenaquinone methyltransferase-like protein; SPTR: Demethylmenaquinone methyltransferase-like protein YP_004654727.1 PFAM: Demethylmenaquinone methyltransferase; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341:IPR013342; KEGG: sli:Slin_6070 galactonate dehydratase; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; PRIAM: Galactonate dehydratase; SPTR: Galactonate dehydratase YP_004654728.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; KEGG: dfe:Dfer_5070 hypothetical protein; SPTR: uncharacterized protein YP_004654729.1 InterPro IPR006260; KEGG: dfe:Dfer_3658 TonB family protein; SPTR: TonB family protein; TIGRFAM: TonB, C-terminal YP_004654730.1 PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain YP_004654731.1 COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sli:Slin_3517 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase YP_004654732.1 PFAM: Beta-lactamase; COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR014189:IPR013154:IPR013149; KEGG: ote:Oter_0170 PIG3 family NAD(P)H quinone oxidoreductase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SPTR: NAD(P)H quinone oxidoreductase, PIG3 family; TIGRFAM: Quinone oxidoreductase , PIG3 YP_004654733.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; COGs: COG3347 conserved hypothetical protein; InterPro IPR013454:IPR001303:IPR002198; KEGG: fjo:Fjoh_4215 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; Class II aldolase/adducin, N-terminal; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; TIGRFAM: Bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase YP_004654734.1 PFAM: Class II Aldolase and Adducin N-terminal domain; short chain dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; COGs: COG4952 sugar isomerase; InterPro IPR012307; KEGG: fjo:Fjoh_4214 xylose isomerase domain-containing protein; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004654735.1 PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484; KEGG: shg:Sph21_0514 carbohydrate kinase, FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; SPTR: Carbohydrate kinase, FGGY YP_004654736.1 PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain YP_004654737.1 PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain; InterPro IPR011444; KEGG: sli:Slin_5453 hypothetical protein; PFAM: Protein of unknown function DUF1549; SPTR: uncharacterized protein YP_004654738.1 PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Carbohydrate binding module (family 6); Protein of unknown function (DUF1553); COGs: COG2267 Lysophospholipase; InterPro IPR000073; KEGG: afu:AF1753 lysophospholipase; PFAM: Alpha/beta hydrolase fold-1; SPTR: Lysophospholipase YP_004654739.1 PFAM: lysophospholipase; KEGG: dfe:Dfer_3974 hypothetical protein; SPTR: uncharacterized protein YP_004654740.1 COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692; KEGG: lby:Lbys_3063 peptidase S45 penicillin amidase; PFAM: Peptidase S45, penicillin amidase; SPTR: Peptidase S45 penicillin amidase YP_004654741.1 PFAM: Penicillin amidase YP_004654742.1 COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545:IPR001650:IPR014001; KEGG: dfe:Dfer_0542 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein YP_004654743.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; InterPro IPR002686; KEGG: chu:CHU_0236 transposase; PFAM: Transposase IS200-like; SPTR: Transposase YP_004654744.1 PFAM: Transposase IS200 like YP_004654745.1 InterPro IPR013428:IPR013427:IPR003088; KEGG: dfe:Dfer_0279 membrane-bound dehydrogenase domain protein; PFAM: Cytochrome c, class I; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; haem-binding region YP_004654746.1 PFAM: Cytochrome c; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type; KEGG: dfe:Dfer_4881 hypothetical protein; SPTR: uncharacterized protein YP_004654747.1 KEGG: sli:Slin_6049 hypothetical protein; SPTR: uncharacterized protein YP_004654749.1 COGs: COG1879 ABC-type sugar transport system periplasmic component; InterProIPR003661:IPR003594:IPR001789:IPR000005:IPR 018060; KEGG: sli:Slin_3199 AraC family transcriptional regulator; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; Helix-turn-helix, AraC type; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; Helix-turn-helix, AraC domain; SPTR: Two component transcriptional regulator, AraC family YP_004654750.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR003663:IPR005828; KEGG: sli:Slin_3184 sugar transporter; PFAM: General substrate transporter; SPTR: Sugar transporter; TIGRFAM: Sugar/inositol transporter YP_004654751.1 PFAM: Sugar (and other) transporter; TIGRFAM: MFS transporter, sugar porter (SP) family; COGs: COG0524 Sugar kinase ribokinase; InterPro IPR011611; KEGG: sli:Slin_3183 PfkB domain protein; PFAM: Carbohydrate/purine kinase; PRIAM: Fructokinase; SPTR: PfkB domain protein YP_004654752.1 PFAM: pfkB family carbohydrate kinase; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1601 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor YP_004654753.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_1602 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein YP_004654754.1 PFAM: SusD family; COGs: COG1621 Beta-fructosidase (levanase/invertase); InterPro IPR013148:IPR013189:IPR001362; KEGG: bss:BSUW23_13050 levanase; PFAM: Glycosyl hydrolases family 32, N-terminal; Glycosyl hydrolase 32, C-terminal; SMART: Glycoside hydrolase, family 32; SPTR: Levanase YP_004654755.1 PFAM: Glycosyl hydrolases family 32 C terminal; Glycosyl hydrolases family 32 N-terminal domain; KEGG: sli:Slin_2024 hypothetical protein; SPTR: uncharacterized protein YP_004654756.1 COGs: COG3836 2 4-dihydroxyhept-2-ene-1 7-dioic acid aldolase; InterPro IPR005000; KEGG: sli:Slin_1071 4-hydroxy-2-oxovalerate aldolase; PFAM: HpcH/HpaI aldolase; PRIAM: 4-hydroxy-2-oxovalerate aldolase; SPTR: 4-hydroxy-2-oxovalerate aldolase YP_004654757.1 PFAM: HpcH/HpaI aldolase/citrate lyase; COGs: COG2610 H+/gluconate symporter and related permease; InterPro IPR003474; KEGG: sli:Slin_1070 gluconate transporter; PFAM: Gluconate transporter; SPTR: Gluconate transporter YP_004654758.1 PFAM: GntP family permease; COGs: COG2721 Altronate dehydratase; InterPro IPR017654:IPR013974:IPR007392; KEGG: rso:RSp0830 D-galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase, C-terminal; SAF domain; PRIAM: Galactarate dehydratase; SPTR: (D)-galactarate dehydrogenase; TIGRFAM: Galactarate dehydratase YP_004654759.1 PFAM: D-galactarate dehydratase / Altronate hydrolase, C terminus; SAF domain; TIGRFAM: galactarate dehydratase; COGs: COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase; InterPro IPR006398:IPR006115; KEGG: dfe:Dfer_1409 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; PRIAM: 2-hydroxy-3-oxopropionate reductase; SPTR: 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase YP_004654760.1 PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; COGs: COG1312 D-mannonate dehydratase; InterPro IPR004628; KEGG: sli:Slin_1069 mannonate dehydratase; PFAM: Mannonate dehydratase; SPTR: Mannonate dehydratase YP_004654761.1 PFAM: D-mannonate dehydratase (UxuA) YP_004654762.1 COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341:IPR013342; KEGG: sli:Slin_1068 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; PRIAM: Glucarate dehydratase; SPTR: Mandelate racemase/muconate lactonizing protein YP_004654763.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; KEGG: sli:Slin_2253 hypothetical protein; SPTR: uncharacterized protein YP_004654764.1 InterPro IPR001387; KEGG: fjo:Fjoh_2803 bacteriophage CI repressor; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Bacteriophage CI repressor YP_004654765.1 PFAM: Helix-turn-helix YP_004654767.1 Prodigal; manually curated YP_004654775.1 KEGG: rbi:RB2501_01435 hypothetical protein; SPTR: uncharacterized protein YP_004654777.1 KEGG: reu:Reut_D6518 phage DNA methylase; SPTR: dna-methyltransferase YP_004654778.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_004654780.1 KEGG: psn:Pedsa_0894 hypothetical protein; SPTR: uncharacterized protein YP_004654781.1 COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: mea:Mex_2p0039 hypothetical protein; PFAM: DNA methylase, C-5 cytosine-specific; SPTR: Site-specific DNA methylase-like protein YP_004654782.1 PFAM: C-5 cytosine-specific DNA methylase YP_004654787.1 KEGG: psn:Pedsa_0863 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004654792.1 Prodigal; manually curated YP_004654793.1 KEGG: vcn:VOLCADRAFT_101335 hypothetical protein; SPTR: uncharacterized protein YP_004654802.1 InterPro IPR013247; PFAM: SH3, type 3 YP_004654803.1 PFAM: Bacterial SH3 domain YP_004654805.1 KEGG: sli:Slin_0588 hypothetical protein; SPTR: uncharacterized protein YP_004654806.1 PFAM: Protein of unknown function (DUF3380) YP_004654809.1 SPTR: uncharacterized protein YP_004654813.1 KEGG: sli:Slin_0677 hypothetical protein; SPTR: uncharacterized protein YP_004654817.1 manually curated YP_004654819.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: rbi:RB2501_10362 tyrosine type site-specific recombinase; PFAM: Integrase, catalytic core, phage; SPTR: Tyrosine type site-specific recombinase YP_004654820.1 PFAM: Phage integrase YP_004654821.1 PFAM: pfkB family carbohydrate kinase YP_004654822.1 KEGG: fbc:FB2170_02555 hypothetical protein; SPTR: uncharacterized protein YP_004654823.1 KEGG: fbc:FB2170_02550 hypothetical protein; SPTR: uncharacterized protein YP_004654824.1 InterPro IPR012910:IPR000531; KEGG: zpr:ZPR_3678 outer hypothetical protein probably involved in nutrient binding; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: outer membrane protein, probably involved in nutrient binding YP_004654825.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: sli:Slin_4239 patatin; PFAM: Patatin; SPTR: Patatin YP_004654826.1 PFAM: Patatin-like phospholipase; COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR005730:IPR000183; KEGG: dfe:Dfer_1153 carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Carboxynorspermidine decarboxylase; TIGRFAM: Carboxynorspermidine decarboxylase YP_004654827.1 PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; TIGRFAM: carboxynorspermidine decarboxylase; COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: sli:Slin_5437 BadM/Rrf2 family transcriptional regulator; PFAM: Transcriptional regulator, Rrf2; SPTR: Transcriptional regulator, BadM/Rrf2 family; TIGRFAM: Transcriptional regulator, Rrf2 YP_004654828.1 PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein; COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR004602:IPR003439; KEGG: dfe:Dfer_3862 excinuclease ABC, A subunit; PFAM: ABC transporter-like; SPTR: Excinuclease ABC, A subunit; TIGRFAM: Excinuclease ABC, A subunit YP_004654829.1 PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: pdi:BDI_2050 NADH-dependent dyhydrogenase; PFAM: Oxidoreductase, N-terminal; SPTR: NADH-dependent dyhydrogenase YP_004654830.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; InterPro IPR006311:IPR001258; KEGG: dfe:Dfer_4570 NHL repeat containing protein; PFAM: NHL repeat; SPTR: NHL repeat containing protein YP_004654832.1 COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR013751:IPR013747; KEGG: bbe:BBR47_46770 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase III; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase III YP_004654833.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR012685; KEGG: bbe:BBR47_46730 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein, F390 synthetase-related YP_004654834.1 TIGRFAM: adenylate-forming enzyme; KEGG: bal:BACI_c31830 metallo-beta-lactamase superfamily protein; SPTR: Zn-dependent hydrolase GumP YP_004654835.1 PFAM: Metallo-beta-lactamase superfamily; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: pfo:Pfl01_4482 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: Sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating); SPTR: 3-beta hydroxysteroid dehydrogenase/isomerase YP_004654836.1 PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase YP_004654837.1 KEGG: mar:MAE_61060 hyalin repeat-containing protein; SPTR: uncharacterized protein YP_004654838.1 COGs: COG2819 hydrolase of the alpha/beta superfamily; InterPro IPR000801; KEGG: dfe:Dfer_4810 esterase; PFAM: esterase; SPTR: esterase YP_004654839.1 PFAM: esterase YP_004654840.1 InterPro IPR002931; KEGG: mtt:Ftrac_0150 transglutaminase domain-containing protein; PFAM: Transglutaminase-like; SPTR: Transglutaminase domain-containing protein YP_004654841.1 PFAM: Transglutaminase-like superfamily; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR013704:IPR006638; KEGG: sli:Slin_1403 radical SAM protein; PFAM: Radical SAM N-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: UPF0313 protein Slin_1403 YP_004654842.1 PFAM: Radical SAM superfamily; Radical SAM N-terminal; TIGRFAM: uncharacterized radical SAM protein YgiQ; COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545:IPR001650:IPR005580:IPR014001; KEGG: sli:Slin_0250 DEAD/DEAH box helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein YP_004654843.1 PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase; COGs: COG2884 ATPase involved in cell division; InterPro IPR003439:IPR003593; KEGG: sli:Slin_3028 ABC transporter; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein YP_004654844.1 PFAM: ABC transporter; COGs: COG0176 Transaldolase; HAMAP: transaldolase; InterPro IPR004731:IPR001585; KEGG: dfe:Dfer_5045 translaldolase; PFAM: Transaldolase; SPTR: Probable transaldolase; TIGRFAM: Transaldolase C YP_004654845.1 PFAM: Transaldolase; TIGRFAM: fructose-6-phosphate aldolase, TalC/MipB family; InterPro IPR012910:IPR000531; KEGG: mtt:Ftrac_0132 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor YP_004654846.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: zpr:ZPR_2448 SusD/RagB family protein; PFAM: RagB/SusD; SPTR: SusD/RagB family protein YP_004654847.1 PFAM: SusD family YP_004654848.1 InterPro IPR013519; KEGG: mtt:Ftrac_0135 fg-gap repeat protein; SPTR: FG-GAP repeat protein YP_004654849.1 PFAM: ASPIC and UnbV; FG-GAP repeat; InterPro IPR013517:IPR011519; KEGG: sli:Slin_5060 ASPIC/UnbV domain protein; PFAM: ASPIC/UnbV; FG-GAP; SPTR: ASPIC/UnbV domain protein YP_004654850.1 PFAM: ASPIC and UnbV; FG-GAP repeat; KEGG: sli:Slin_2828 hypothetical protein; SPTR: uncharacterized protein YP_004654851.1 InterPro IPR012910; KEGG: rbi:RB2501_03790 TonB-dependent outer membrane receptor protein; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent outer membrane receptor protein YP_004654852.1 PFAM: TonB-dependent Receptor Plug Domain; KEGG: pfl:PFL_6136 hypothetical protein; SPTR: uncharacterized protein YP_004654853.1 PFAM: ATP-grasp domain; KEGG: llo:LLO_0927 hypothetical protein; SPTR: uncharacterized protein YP_004654854.1 COGs: COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenase large terminal subunit; InterPro IPR017941; KEGG: pfl:PFL_6138 Rieske (2Fe-2S) domain-containing protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Rieske 2Fe-2S domain protein YP_004654855.1 PFAM: Rieske [2Fe-2S] domain YP_004654856.1 COGs: COG0557 Exoribonuclease R; InterProIPR011805:IPR004476:IPR013223:IPR001900:IPR 003029; KEGG: sli:Slin_5873 ribonuclease R; PFAM: Ribonuclease II/R; Ribonuclease B, OB region N-terminal; Ribosomal protein S1, RNA binding domain; PRIAM: Exoribonuclease II; SPTR: Ribonuclease R; TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria YP_004654857.1 PFAM: RNB domain; Ribonuclease B OB domain; S1 RNA binding domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases; InterPro IPR004675:IPR003779; KEGG: zpr:ZPR_4188 carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; SPTR: Carboxymuconolactone decarboxylase; TIGRFAM: Alkylhydroperoxidase AhpD core YP_004654858.1 PFAM: Carboxymuconolactone decarboxylase; TIGRFAM: alkylhydroperoxidase AhpD family core domain; COGs: COG0535 Fe-S oxidoreductase; KEGG: gfo:GFO_3602 radical SAM superfamily protein; SPTR: uncharacterized protein YP_004654859.1 PFAM: Radical SAM superfamily; Protein of unknown function (DUF3641); InterPro IPR001387; KEGG: cao:Celal_0834 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix domain protein YP_004654860.1 PFAM: Helix-turn-helix; InterPro IPR017508; KEGG: cao:Celal_0835 HipA N-terminal domain protein; SPTR: Possible HipA-like protein; TIGRFAM: HipA, N-terminal YP_004654861.1 TIGRFAM: HipA N-terminal domain; COGs: COG3550 conserved hypothetical protein; InterPro IPR012894:IPR012893; KEGG: zpr:ZPR_4409 HipA-like protein; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; SPTR: HipA-like protein YP_004654862.1 PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain; KEGG: cat:CA2559_04180 hypothetical protein; SPTR: uncharacterized protein YP_004654863.1 InterPro IPR001734; KEGG: cat:CA2559_04175 hypothetical protein; PFAM: Sodium/solute symporter; SPTR: uncharacterized protein YP_004654864.1 PFAM: Sodium:solute symporter family; KEGG: gfo:GFO_3605 hypothetical protein; SPTR: uncharacterized protein YP_004654865.1 COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: cat:CA2559_04165 outer membrane protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: Outer membrane protein YP_004654866.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: fjo:Fjoh_3509 sterol desaturase-like protein; PFAM: Fatty acid hydroxylase; SPTR: Sterol desaturase-like protein YP_004654867.1 PFAM: Fatty acid hydroxylase superfamily; COGs: COG3591 V8-like Glu-specific endopeptidase; KEGG: fre:Franean1_5547 peptidase S1 and S6 chymotrypsin/Hap; SPTR: Peptidase S1 and S6 chymotrypsin/Hap YP_004654868.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_1007 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004654869.1 PFAM: short chain dehydrogenase; COGs: COG2834 Outer membrane lipoprotein-sorting protein; InterPro IPR004564; KEGG: dfe:Dfer_3188 outer membrane lipoprotein carrier protein LolA; PFAM: Outer membrane lipoprotein carrier protein LolA; SPTR: Outer membrane lipoprotein carrier protein LolA YP_004654870.1 PFAM: Outer membrane lipoprotein carrier protein LolA; COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543:IPR018541; KEGG: sli:Slin_5855 cell divisionFtsK/SpoIIIE; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SPTR: Cell divisionFtsK/SpoIIIE YP_004654871.1 PFAM: Ftsk gamma domain; FtsK/SpoIIIE family; COGs: COG0167 Dihydroorotate dehydrogenase; HAMAP: Dihydroorotate dehydrogenase; InterPro IPR005719:IPR012135; KEGG: dfe:Dfer_3190 dihydroorotate dehydrogenase 2; PFAM: Dihydroorotate dehydrogenase, class 1/ 2; PRIAM: Dihydroorotate oxidase; SPTR: Dihydroorotate dehydrogenase; TIGRFAM: Dihydroorotate dehydrogenase, class 2 YP_004654872.1 PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase, subfamily 2; KEGG: dfe:Dfer_3880 hypothetical protein; SPTR: uncharacterized protein YP_004654873.1 COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: dfe:Dfer_3504 acyltransferase 3; PFAM: Acyltransferase 3; SPTR: Acyltransferase 3; manually curated YP_004654874.1 PFAM: Acyltransferase; InterPro IPR002509; KEGG: dfe:Dfer_3505 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase YP_004654875.1 PFAM: Polysaccharide deacetylase; COGs: COG0035 Uracil phosphoribosyltransferase; KEGG: dfe:Dfer_3881 uracil phosphoribosyltransferase; SPTR: Uracil phosphoribosyltransferase YP_004654876.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: uracil phosphoribosyltransferase; KEGG: dfe:Dfer_3697 barstar (barnase inhibitor); SPTR: Barstar (Barnase inhibitor) YP_004654877.1 PFAM: Barstar (barnase inhibitor); COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; HAMAP: Uncharacterised protein family UPF0102; InterPro IPR003509; KEGG: sli:Slin_5877 hypothetical protein; PFAM: Uncharacterised protein family UPF0102; SPTR: UPF0102 protein Slin_5877 YP_004654878.1 PFAM: Uncharacterised protein family UPF0102; TIGRFAM: TIGR00252 family protein; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR013096:IPR000005:IPR018060; KEGG: dfe:Dfer_4301 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; Cupin 2, conserved barrel; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004654879.1 PFAM: Cupin domain; Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; InterPro IPR006935:IPR003593; KEGG: sli:Slin_3380 ATPase AAA; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: ATPase, AAA+ type, core; SPTR: AAA ATPase YP_004654880.1 PFAM: Type III restriction enzyme, res subunit; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: dfe:Dfer_4299 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004654881.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: dfe:Dfer_4289 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004654882.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG3828 conserved hypothetical protein; InterPro IPR013428:IPR009381:IPR000923; KEGG: dfe:Dfer_4288 membrane-bound dehydrogenase domain protein; PFAM: Blue (type 1) copper domain; Protein of unknown function DUF1037; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase YP_004654883.1 PFAM: Trehalose utilisation; Copper binding proteins, plastocyanin/azurin family; CARDB; TIGRFAM: membrane-bound dehydrogenase domain; COGs: COG4299 conserved hypothetical protein; InterPro IPR019259; KEGG: sli:Slin_5410 hypothetical protein; PFAM: Protein of unknown function DUF2261, transmembrane; SPTR: uncharacterized protein YP_004654884.1 PFAM: Protein of unknown function (DUF1624); COGs: COG1858 Cytochrome c peroxidase; InterPro IPR004852; KEGG: dfe:Dfer_1545 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; PRIAM: Cytochrome-c peroxidase; SPTR: Cytochrome-c peroxidase YP_004654885.1 PFAM: Di-haem cytochrome c peroxidase; COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: fbc:FB2170_00745 hypothetical protein; SPTR: WD40 domain protein beta Propeller YP_004654886.1 PFAM: WD40-like Beta Propeller Repeat; COGs: COG0262 Dihydrofolate reductase; InterPro IPR002734; KEGG: cpi:Cpin_6691 bifunctional deaminase-reductase domain protein; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; SPTR: Bifunctional deaminase-reductase domain protein YP_004654887.1 PFAM: RibD C-terminal domain; KEGG: fjo:Fjoh_1571 hypothetical protein; SPTR: uncharacterized protein YP_004654888.1 PFAM: Protein of unknown function (DUF419); InterPro IPR015018; KEGG: sli:Slin_4564 hypothetical protein; PFAM: Protein of unknown function DUF1905; SPTR: uncharacterized protein YP_004654889.1 PFAM: Domain of unknown function (DUF1905); InterPro IPR013538; KEGG: lic:LIC10281 hypothetical protein; PFAM: Activator of Hsp90 ATPase homologue 1-like; SPTR: uncharacterized protein YP_004654890.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein; COGs: COG3795 conserved hypothetical protein; InterPro IPR005545; KEGG: dfe:Dfer_5356 YCII-related protein; PFAM: YCII-related; SPTR: YCII-related protein YP_004654891.1 PFAM: YCII-related domain; COGs: COG4941 RNA polymerase sigma factor containing a TPR repeat domain; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_2782 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004654892.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1741 Pirin-related protein; InterPro IPR003829:IPR008778; KEGG: sli:Slin_5591 pirin; PFAM: Pirin, N-terminal; Pirin, C-terminal; SPTR: Pirin domain protein YP_004654893.1 PFAM: Pirin C-terminal cupin domain; Pirin; COGs: COG0400 esterase; InterPro IPR003140; KEGG: cpi:Cpin_5017 phospholipase/carboxylesterase; PFAM: Phospholipase/carboxylesterase; SPTR: Phospholipase/Carboxylesterase YP_004654894.1 PFAM: Phospholipase/Carboxylesterase; COGs: COG0346 Lactoylglutathione lyase and related lyase; InterPro IPR004360; KEGG: sli:Slin_5510 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxylase YP_004654895.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; InterPro IPR000835:IPR000182; KEGG: fjo:Fjoh_4320 MarR family transcriptional regulator; PFAM: GCN5-related N-acetyltransferase; HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family YP_004654896.1 PFAM: Acetyltransferase (GNAT) family; InterPro IPR004360; KEGG: sti:Sthe_3215 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004654897.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: ppn:Palpr_0322 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: transcriptional regulator YP_004654898.1 PFAM: AraC-like ligand binding domain; KEGG: ava:Ava_4034 PilT protein-like protein; SPTR: PilT protein-like protein YP_004654899.1 COGs: COG2255 Holliday junction resolvasome helicase subunit; HAMAP: DNA helicase, Holliday junction RuvB type; InterProIPR004605:IPR008824:IPR003959:IPR008823:IPR 003593; KEGG: dfe:Dfer_3690 Holliday junction DNA helicase RuvB; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: Holliday junction ATP-dependent DNA helicase ruvB; TIGRFAM: DNA helicase, Holliday junction RuvB type YP_004654900.1 PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit; KEGG: sli:Slin_4186 hypothetical protein; SPTR: uncharacterized protein YP_004654902.1 KEGG: sli:Slin_6908 hypothetical protein; SPTR: uncharacterized protein YP_004654904.1 KEGG: sli:Slin_4185 hypothetical protein; SPTR: uncharacterized protein YP_004654906.1 PFAM: Ndr family YP_004654910.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: rmr:Rmar_0728 OmpA/MotB domain-containing protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein YP_004654911.1 PFAM: OmpA family; COGs: COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); InterPro IPR008331; KEGG: cyc:PCC7424_1076 ferritin Dps family protein; PFAM: Ferritin/Dps protein; SPTR: Ferritin Dps family protein YP_004654912.1 PFAM: Ferritin-like domain YP_004654913.1 KEGG: cpi:Cpin_1932 hypothetical protein; SPTR: uncharacterized protein YP_004654914.1 manually curated YP_004654915.1 COGs: COG3852 Signal transduction histidine kinase nitrogen specific; InterProIPR000014:IPR001789:IPR013767:IPR003661:IPR 003594; KEGG: dfe:Dfer_2748 signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; PAS fold; SMART: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS YP_004654916.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789; KEGG: amr:AM1_1726 response regulator; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator YP_004654917.1 PFAM: Response regulator receiver domain; COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR000014:IPR013655:IPR003661:IPR003594:IPR 001610; KEGG: sli:Slin_4322 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-3; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAC motif; SPTR: PAS fold family; TIGRFAM: PAS YP_004654918.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR002078:IPR002197:IPR003593; KEGG: dfe:Dfer_2749 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family YP_004654919.1 PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR000394:IPR007046:IPR007634; KEGG: dfe:Dfer_2750 RNA polymerase, sigma 54 subunit, RpoN; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54; SPTR: RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma factor 54 YP_004654920.1 PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54, DNA binding domain; Sigma-54 factor, core binding domain; TIGRFAM: RNA polymerase sigma-54 factor; COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR007891:IPR003661:IPR003594; KEGG: sli:Slin_2719 histidine kinase; PFAM: CHASE3; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase YP_004654921.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; CHASE3 domain; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789; KEGG: lic:LIC11201 response regulator; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator Rcp1 YP_004654922.1 PFAM: Response regulator receiver domain YP_004654923.1 KEGG: psn:Pedsa_2779 hypothetical protein; SPTR: uncharacterized protein YP_004654924.1 PFAM: Protein of unknown function (DUF1469); KEGG: wvi:Weevi_1691 hypothetical protein; SPTR: Aspartyl-tRNA synthetase YP_004654925.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: cpi:Cpin_2890 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein YP_004654926.1 PFAM: Response regulator receiver domain; KEGG: ckp:ckrop_0034 hypothetical protein; SPTR: uncharacterized protein YP_004654928.1 InterPro IPR011971:IPR019052; KEGG: dfe:Dfer_3187 hypothetical protein; PFAM: Protein of unknown function DUF2383; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02284 YP_004654929.1 PFAM: Domain of unknown function (DUF2383); TIGRFAM: conserved hypothetical protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_3071 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004654930.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931; KEGG: dfe:Dfer_4408 transglutaminase domain protein; PFAM: Transglutaminase-like; SMART: Transglutaminase-like; SPTR: Transglutaminase domain protein YP_004654931.1 PFAM: Transglutaminase-like superfamily YP_004654932.1 KEGG: lby:Lbys_2890 hypothetical protein; SPTR: uncharacterized protein YP_004654933.1 COGs: COG0296 1 4-alpha-glucan branching enzyme; InterPro IPR004193:IPR006047:IPR006048:IPR006589; KEGG: dfe:Dfer_0213 glycoside hydrolase 13 domain protein; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic region; Alpha-amylase, C-terminal all beta; PRIAM: 1,4-alpha-glucan branching enzyme; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; SPTR: Maltooligosyl trehalose hydrolase YP_004654934.1 PFAM: Alpha amylase, C-terminal all-beta domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain; TIGRFAM: alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase; malto-oligosyltrehalose trehalohydrolase; COGs: COG0628 permease; InterPro IPR002549; KEGG: dfe:Dfer_4013 protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; SPTR: uncharacterized protein YP_004654935.1 PFAM: Domain of unknown function DUF20; KEGG: ava:Ava_4160 VCBS; SPTR: VCBS YP_004654936.1 KEGG: dfe:Dfer_2635 hypothetical protein; SPTR: uncharacterized protein YP_004654938.1 COGs: COG3828 conserved hypothetical protein; KEGG: sli:Slin_3440 PKD domain containing protein; SPTR: PKD domain containing protein YP_004654939.1 PFAM: Trehalose utilisation; InterPro IPR006694; KEGG: sli:Slin_5702 fatty acid hydroxylase; PFAM: Fatty acid hydroxylase; SPTR: Fatty acid hydroxylase YP_004654940.1 PFAM: Fatty acid hydroxylase superfamily; COGs: COG1164 Oligoendopeptidase F; InterPro IPR011976:IPR001567; KEGG: sli:Slin_5185 oligoendopeptidase, M3 family; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; SPTR: Oligoendopeptidase, M3 family; TIGRFAM: Peptidase M3B, oligoendopeptidase-related clade 2 YP_004654941.1 PFAM: Peptidase M3; TIGRFAM: oligoendopeptidase, M3 family; InterPro IPR019298; KEGG: sli:Slin_0320 hypothetical protein; PFAM: Nucleotide-binding protein, PIN domain; SPTR: uncharacterized protein YP_004654942.1 PFAM: Predicted nucleotide-binding protein, containing PIN domain YP_004654943.1 COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: sli:Slin_6038 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28 YP_004654944.1 PFAM: PA domain; Peptidase M28; InterPro IPR006311:IPR010869; KEGG: dfe:Dfer_3701 protein of unknown function DUF1501; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein YP_004654945.1 PFAM: Protein of unknown function (DUF1501); InterPro IPR005804; KEGG: mtt:Ftrac_0880 alkane 1-monooxygenase; PFAM: Fatty acid desaturase, type 1; PRIAM: Alkane 1-monooxygenase; SPTR: Alkane 1-monooxygenase YP_004654946.1 PFAM: Fatty acid desaturase; KEGG: sli:Slin_0424 hypothetical protein; SPTR: uncharacterized protein YP_004654947.1 KEGG: sli:Slin_0423 hypothetical protein; SPTR: uncharacterized protein YP_004654948.1 PFAM: Protein of unknown function (DUF2846); COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_0422 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS YP_004654949.1 PFAM: Histidine kinase YP_004654950.1 KEGG: sli:Slin_5138 hypothetical protein; SPTR: uncharacterized protein YP_004654951.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_0421 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004654952.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: dfe:Dfer_5692 protein of unknown function DUF433; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein YP_004654953.1 PFAM: Protein of unknown function (DUF433); COGs: COG0415 Deoxyribodipyrimidine photolyase; InterPro IPR006050:IPR005101; KEGG: sli:Slin_0029 deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal; PRIAM: Deoxyribodipyrimidine photo-lyase; SPTR: Deoxyribodipyrimidine photo-lyase YP_004654954.1 PFAM: FAD binding domain of DNA photolyase; DNA photolyase; COGs: COG3448 CBS-domain-containing membrane protein; InterPro IPR000644; KEGG: fjo:Fjoh_1068 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; SPTR: CBS domain containing protein YP_004654955.1 PFAM: CBS domain; COGs: COG1003 Glycine cleavage system protein P (pyridoxal-binding) C-terminal domain; HAMAP: Glycine cleavage system P-protein; InterPro IPR003437:IPR020580; KEGG: dfe:Dfer_4078 glycine dehydrogenase; PFAM: Glycine cleavage system P-protein, N-terminal; SPTR: Glycine dehydrogenase [decarboxylating]; TIGRFAM: Glycine cleavage system P-protein YP_004654956.1 PFAM: Glycine cleavage system P-protein; TIGRFAM: glycine dehydrogenase (decarboxylating); COGs: COG3664 Beta-xylosidase; InterPro IPR000514; KEGG: dfe:Dfer_5268 glycoside hydrolase 39; PFAM: Glycoside hydrolase, family 39; PRIAM: Xylan 1,4-beta-xylosidase; SPTR: Glycoside hydrolase 39 YP_004654957.1 PFAM: Glycosyl hydrolases family 39; COGs: COG2368 Aromatic ring hydroxylase; InterPro IPR004925; KEGG: nmr:Nmar_0207 vinylacetyl-CoA delta-isomerase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase; PRIAM: Vinylacetyl-CoA Delta-isomerase; SPTR: 4-hydroxyphenylacetate 3-hydroxylase YP_004654958.1 PFAM: 4-hydroxyphenylacetate 3-hydroxylase N terminal; 4-hydroxyphenylacetate 3-hydroxylase C terminal; COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: dal:Dalk_1293 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR: Enoyl-CoA hydratase/isomerase YP_004654959.1 PFAM: Enoyl-CoA hydratase/isomerase; COGs: COG1257 Hydroxymethylglutaryl-CoA reductase; InterPro IPR002202; KEGG: gpb:HDN1F_32470 similar to hydroxymethylglutaryl-CoA reductase (NADPH); PFAM: Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic; PRIAM: Hydroxymethylglutaryl-CoA reductase (NADPH); SPTR: Similar to hydroxymethylglutaryl-CoA reductase (NADPH) YP_004654960.1 PFAM: Hydroxymethylglutaryl-coenzyme A reductase; TIGRFAM: 3-hydroxy-3-methylglutaryl Coenzyme A reductase, hydroxymethylglutaryl-CoA reductase (NADP); COGs: COG3384 conserved hypothetical protein; InterPro IPR004183; KEGG: cpi:Cpin_4445 extradiol ring-cleavage dioxygenase class III protein subunit B; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; SPTR: Extradiol ring-cleavage dioxygenase class III protein subunit B YP_004654961.1 PFAM: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro IPR010720; KEGG: dfe:Dfer_1570 hypothetical protein; SMART: Alpha-L-arabinofuranosidase, C-terminal; SPTR: uncharacterized protein YP_004654962.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: sli:Slin_0234 aldo/keto reductase; PFAM: Aldo/keto reductase; SPTR: Aldo/keto reductase YP_004654963.1 PFAM: Aldo/keto reductase; COGs: COG3254 conserved hypothetical protein; HAMAP: L-rhamnose 1-epimerase; InterPro IPR013448:IPR008000; KEGG: sli:Slin_1807 L-rhamnose 1-epimerase; PFAM: Rhamnose mutarotase; SPTR: L-rhamnose 1-epimerase; TIGRFAM: L-rhamnose 1-epimerase YP_004654964.1 PFAM: Domain of unknown function (DUF718); TIGRFAM: L-rhamnose 1-epimerase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683:IPR004104; KEGG: fbc:FB2170_00605 hypothetical protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: uncharacterized protein YP_004654965.1 PFAM: Oxidoreductase, C-terminal alpha/beta domain; Oxidoreductase, NAD-binding Rossmann fold; InterPro IPR006869; KEGG: cao:Celal_0940 hypothetical protein; PFAM: Protein of unknown function DUF547; SPTR: uncharacterized protein YP_004654966.1 PFAM: Protein of unknown function, DUF547; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_3075 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004654967.1 PFAM: short chain dehydrogenase; COGs: COG2030 Acyl dehydratase; InterPro IPR002539; KEGG: sli:Slin_3533 MaoC domain protein dehydratase; PFAM: MaoC-like dehydratase; SPTR: MaoC domain protein dehydratase YP_004654968.1 PFAM: MaoC like domain; COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; HAMAP: Maf-like protein; InterPro IPR003697; KEGG: dfe:Dfer_2424 maf protein; PFAM: Maf-like protein; SPTR: Maf-like protein Dfer_2424; TIGRFAM: Maf-like protein YP_004654969.1 PFAM: Maf-like protein; TIGRFAM: MAF protein; KEGG: sli:Slin_0715 hypothetical protein; SPTR: uncharacterized protein YP_004654970.1 KEGG: mtt:Ftrac_3362 hypothetical protein; SPTR: Membrane protein YP_004654971.1 PFAM: Protein of unknown function (DUF2029); HAMAP: 50S ribosomal protein L34; InterPro IPR000271; KEGG: dfe:Dfer_3852 ribosomal protein L34; PFAM: Ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: Ribosomal protein L34 YP_004654972.1 PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; HAMAP: Ribonuclease P; InterPro IPR000100; KEGG: dfe:Dfer_3851 ribonuclease P protein component; SPTR: Ribonuclease P protein component; TIGRFAM: Ribonuclease P YP_004654973.1 PFAM: Ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: sli:Slin_5611 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family YP_004654974.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; HAMAP: NAD(P)H-quinone oxidoreductase subunit H; InterPro IPR001135; KEGG: dfe:Dfer_3733 NADH dehydrogenase (quinone); PFAM: NADH-quinone oxidoreductase, subunit D; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH dehydrogenase (Quinone) YP_004654975.1 PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit YP_004654976.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047:IPR013247; KEGG: sli:Slin_6234 peptidase M23; PFAM: Peptidase M23; SH3, type 3; SPTR: Peptidase M23 YP_004654977.1 PFAM: Peptidase M23; Bacterial SH3 domain; KEGG: dfe:Dfer_3230 hypothetical protein; SPTR: uncharacterized protein YP_004654978.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3424 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; manually curated YP_004654979.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; COGs: COG0671 Membrane-associated phospholipid phosphatase; InterPro IPR000326; KEGG: ppn:Palpr_2396 phosphoesterase pa-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: Phosphoesterase PA-phosphatase related protein YP_004654980.1 PFAM: PAP2 superfamily; InterPro IPR002781; KEGG: chu:CHU_0807 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: uncharacterized protein YP_004654981.1 PFAM: Sulfite exporter TauE/SafE; COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: sli:Slin_6105 hypothetical protein; PFAM: Protein of unknown function DUF58; SPTR: uncharacterized protein YP_004654982.1 PFAM: Protein of unknown function DUF58; KEGG: dfe:Dfer_3843 hypothetical protein; SPTR: uncharacterized protein YP_004654983.1 KEGG: sli:Slin_6086 hypothetical protein; SPTR: uncharacterized protein YP_004654984.1 COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: dfe:Dfer_3384 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR YP_004654985.1 PFAM: Biopolymer transport protein ExbD/TolR; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: dfe:Dfer_3385 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB proton channel YP_004654986.1 PFAM: MotA/TolQ/ExbB proton channel family; COGs: COG4111 conserved hypothetical protein; InterPro IPR000086; KEGG: cpi:Cpin_6951 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: uncharacterized protein YP_004654987.1 PFAM: NUDIX domain; KEGG: sli:Slin_2853 hypothetical protein; SPTR: uncharacterized protein YP_004654988.1 COGs: COG0405 Gamma-glutamyltransferase; InterPro IPR000101; KEGG: dfe:Dfer_3938 gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase; PRIAM: Gamma-glutamyltransferase; SPTR: Gamma-glutamyltransferase; TIGRFAM: Gamma-glutamyltranspeptidase YP_004654989.1 PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dfe:Dfer_3991 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein YP_004654990.1 PFAM: alpha/beta hydrolase fold; InterPro IPR015414; KEGG: dfe:Dfer_3984 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein; SPTR: SNARE associated Golgi protein YP_004654991.1 PFAM: SNARE associated Golgi protein; COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR001001; KEGG: dfe:Dfer_3720 DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; PRIAM: DNA-directed DNA polymerase; SMART: DNA polymerase III, beta chain; SPTR: DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta chain YP_004654992.1 PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit; COGs: COG0082 Chorismate synthase; InterPro IPR000453; KEGG: dfe:Dfer_4064 chorismate synthase; PFAM: Chorismate synthase; PRIAM: Chorismate synthase; SPTR: Chorismate synthase; TIGRFAM: Chorismate synthase YP_004654993.1 PFAM: Chorismate synthase; TIGRFAM: chorismate synthase; KEGG: dfe:Dfer_4063 hypothetical protein; SPTR: uncharacterized protein YP_004654994.1 KEGG: dfe:Dfer_4062 hypothetical protein; SPTR: uncharacterized protein YP_004654995.1 InterPro IPR013105:IPR001440:IPR019734; KEGG: dfe:Dfer_4061 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; SPTR: Tetratricopeptide TPR_2 repeat protein YP_004654996.1 COGs: COG0226 ABC-type phosphate transport system periplasmic component; KEGG: sli:Slin_5092 ABC-type phosphate transporter periplasmic component-like protein; SPTR: ABC-type phosphate transport system periplasmic component-like protein YP_004654997.1 KEGG: sli:Slin_5091 hypothetical protein; SPTR: uncharacterized protein YP_004654998.1 InterPro IPR006260:IPR003538; KEGG: sli:Slin_5090 TonB family protein; PFAM: Gram-negative bacterial tonB protein; SPTR: TonB family protein; TIGRFAM: TonB, C-terminal YP_004654999.1 PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; InterPro IPR003400; KEGG: dfe:Dfer_4057 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR YP_004655000.1 PFAM: Biopolymer transport protein ExbD/TolR; InterPro IPR003400; KEGG: sli:Slin_5088 biopolymertransporter ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR YP_004655001.1 PFAM: Biopolymer transport protein ExbD/TolR; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: sli:Slin_5087 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB proton channel YP_004655002.1 PFAM: MotA/TolQ/ExbB proton channel family; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: mxa:MXAN_7310 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Oxidoreductase, short chain dehydrogenase/reductase YP_004655003.1 PFAM: short chain dehydrogenase; KEGG: sli:Slin_4946 hypothetical protein; SPTR: uncharacterized protein YP_004655004.1 TIGRFAM: conserved repeat domain; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_4945 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein YP_004655005.1 PFAM: WD40-like Beta Propeller Repeat; OmpA family; InterPro IPR004993; KEGG: sli:Slin_5924 GH3 auxin-responsive promoter; PFAM: GH3 auxin-responsive promoter; SPTR: GH3 auxin-responsive promoter YP_004655006.1 PFAM: GH3 auxin-responsive promoter; InterPro IPR008258; KEGG: dfe:Dfer_3070 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase-like, catalytic; SPTR: Lytic transglycosylase catalytic YP_004655007.1 PFAM: Transglycosylase SLT domain; COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: sli:Slin_1870 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YceI family protein YP_004655008.1 PFAM: YceI-like domain YP_004655009.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_3842 dolichyl-phosphate beta-D-mannosyltransferase; PFAM: Glycosyl transferase, family 2; PRIAM: Dolichyl-phosphate beta-D-mannosyltransferase; SPTR: Dolichyl-phosphate beta-D-mannosyltransferase YP_004655010.1 PFAM: Glycosyl transferase 2; COGs: COG0407 Uroporphyrinogen-III decarboxylase; HAMAP: Uroporphyrinogen decarboxylase HemE; InterPro IPR006361:IPR000257; KEGG: dfe:Dfer_3425 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); PRIAM: Uroporphyrinogen decarboxylase; SPTR: Uroporphyrinogen decarboxylase; TIGRFAM: Uroporphyrinogen decarboxylase HemE YP_004655011.1 PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: uroporphyrinogen decarboxylase; COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR001367; KEGG: sli:Slin_2957 iron (metal) dependent repressor, DtxR family; PFAM: Iron dependent repressor; SMART: Iron dependent repressor; SPTR: Iron (Metal) dependent repressor, DtxR family YP_004655012.1 PFAM: FeoA domain; Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain; KEGG: sli:Slin_5143 hypothetical protein; SPTR: uncharacterized protein YP_004655013.1 KEGG: sli:Slin_5142 hypothetical protein; SPTR: uncharacterized protein YP_004655014.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_5141 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004655015.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1914 Mn2+ and Fe2+ transporter of the NRAMP family; HAMAP: Manganese transport protein mntH; InterPro IPR001046; KEGG: dfe:Dfer_4677 Mn2+/Fe2+ transporter, NRAMP family; PFAM: Natural resistance-associated macrophage protein; SPTR: Mn2+/Fe2+ transporter, NRAMP family; TIGRFAM: Natural resistance-associated macrophage protein YP_004655016.1 PFAM: Natural resistance-associated macrophage protein; TIGRFAM: NRAMP (natural resistance-associated macrophage protein) metal ion transporters; KEGG: dfe:Dfer_5355 hypothetical protein; SPTR: uncharacterized protein YP_004655017.1 PFAM: Domain of Unknown Function (DUF748); KEGG: sli:Slin_5618 hypothetical protein; SPTR: uncharacterized protein YP_004655018.1 KEGG: aas:Aasi_0589 hypothetical protein; SPTR: uncharacterized protein YP_004655019.1 PFAM: Protein of unknown function (DUF2851); COGs: COG2234 aminopeptidase; InterPro IPR003137:IPR007484; KEGG: dfe:Dfer_4110 peptidase M28; PFAM: Peptidase M28; Protease-associated PA; SPTR: Peptidase M28 YP_004655020.1 PFAM: PA domain; Peptidase M28; KEGG: apj:APJL_1764 hypothetical protein; SPTR: uncharacterized protein YP_004655021.1 SPTR: uncharacterized protein YP_004655022.1 COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated YP_004655023.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; COGs: COG2373 Large extracellular alpha-helical protein; InterPro IPR002890:IPR011625; KEGG: dfe:Dfer_3542 alpha-2-macroglobulin domain protein; PFAM: Alpha-2-macroglobulin, N-terminal; Alpha-2-macroglobulin, N-terminal 2; SPTR: Alpha-2-macroglobulin domain protein YP_004655024.1 PFAM: Alpha-macro-globulin thiol-ester bond-forming region; MG2 domain; Alpha-2-macroglobulin family; Alpha-2-macroglobulin MG1 domain; Alpha-2-macroglobulin family N-terminal region; manually curated YP_004655025.1 PFAM: ABC transporter YP_004655026.1 InterPro IPR004843; KEGG: fjo:Fjoh_0747 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase YP_004655027.1 PFAM: Calcineurin-like phosphoesterase; COGs: COG1381 Recombinational DNA repair protein (RecF pathway); HAMAP: DNA repair protein recO; InterPro IPR003717; KEGG: dfe:Dfer_4044 DNA repair protein RecO; PFAM: Recombination protein O, RecO; SPTR: DNA repair protein recO; TIGRFAM: Recombination protein O, RecO YP_004655028.1 PFAM: Recombination protein O C terminal; Recombination protein O N terminal; TIGRFAM: DNA repair protein RecO; COGs: COG0548 Acetylglutamate kinase; InterPro IPR004662:IPR001048; KEGG: dfe:Dfer_4174 acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase; PRIAM: Acetylglutamate kinase; SPTR: Acetylglutamate kinase; TIGRFAM: Acetylglutamate kinase YP_004655029.1 PFAM: Amino acid kinase; TIGRFAM: acetylglutamate kinase; COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006175; KEGG: lby:Lbys_3494 endoribonuclease L-psp; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP YP_004655030.1 PFAM: Endoribonuclease L-PSP; KEGG: sli:Slin_6621 hypothetical protein; SPTR: uncharacterized protein YP_004655031.1 COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); InterPro IPR002695:IPR011607:IPR013982; KEGG: dfe:Dfer_3074 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, formylation region; MGS-like; PRIAM: Phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme, formylation region; SPTR: IMP cyclohydrolase; TIGRFAM: AICARFT/IMPCHase bienzyme YP_004655032.1 PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; InterPro IPR011701; KEGG: gfo:GFO_2207 hypothetical protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily transporter YP_004655033.1 PFAM: Major Facilitator Superfamily; KEGG: psn:Pedsa_2060 hypothetical protein; SPTR: uncharacterized protein YP_004655034.1 PFAM: Prolyl oligopeptidase; KEGG: fjo:Fjoh_2886 hypothetical protein; SPTR: uncharacterized protein YP_004655035.1 KEGG: fjo:Fjoh_2065 hypothetical protein; SPTR: Transposase YP_004655036.1 PFAM: Transposase IS200 like; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR005931:IPR015590; KEGG: dfe:Dfer_3807 delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase; PRIAM: 1-pyrroline-5-carboxylate dehydrogenase; SPTR: 1-pyrroline-5-carboxylate dehydrogenase; TIGRFAM: Delta-1-pyrroline-5-carboxylate dehydrogenase 1 YP_004655037.1 PFAM: Aldehyde dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase, group 1; COGs: COG1505 Serine protease of the peptidase S9A; InterPro IPR004106:IPR001375; KEGG: dfe:Dfer_4608 prolyl oligopeptidase; PFAM: Peptidase S9A, oligopeptidase, N-terminal beta-propeller; Peptidase S9, prolyl oligopeptidase, catalytic domain; PRIAM: Prolyl oligopeptidase; SPTR: Prolyl oligopeptidase YP_004655038.1 PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase; KEGG: dfe:Dfer_3562 hypothetical protein; SPTR: uncharacterized protein YP_004655039.1 KEGG: reh:H16_A1246 hypothetical protein; SPTR: uncharacterized protein h16_A1246 YP_004655040.1 COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076; KEGG: sli:Slin_0454 glucose-methanol-choline oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase YP_004655041.1 PFAM: GMC oxidoreductase; COGs: COG4783 Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: sli:Slin_0980 peptidase M48 Ste24p; PFAM: Peptidase M48, Ste24p; SPTR: Peptidase M48 Ste24p YP_004655042.1 PFAM: Peptidase M48; COGs: COG0824 thioesterase; KEGG: geo:Geob_1205 thioesterase superfamily protein; SPTR: Thioesterase superfamily YP_004655043.1 PFAM: Acyl-ACP thioesterase; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family; COGs: COG1714 membrane protein/domain; InterPro IPR010432; KEGG: sli:Slin_4958 RDD domain containing protein; PFAM: RDD; SPTR: RDD domain containing protein YP_004655044.1 PFAM: RDD family; COGs: COG1300 membrane protein; InterPro IPR002798; KEGG: sli:Slin_4959 hypothetical protein; PFAM: Protein of unknown function DUF95, transmembrane; SPTR: uncharacterized protein YP_004655045.1 PFAM: Integral membrane protein DUF95; KEGG: sli:Slin_4960 hypothetical protein; SPTR: uncharacterized protein YP_004655046.1 COGs: COG3275 regulator of cell autolysis; InterPro IPR001646:IPR010559:IPR003594; KEGG: sli:Slin_3593 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; Pentapeptide repeat; ATP-binding region, ATPase-like; SPTR: Signal transduction histidine kinase, LytS YP_004655049.1 PFAM: Serine hydroxymethyltransferase; COGs: COG0164 Ribonuclease HII; InterPro IPR001352; KEGG: sli:Slin_6108 ribonuclease H; PFAM: Ribonuclease HII/HIII; PRIAM: Ribonuclease H; SPTR: Ribonuclease HII YP_004655050.1 PFAM: Ribonuclease HII; COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715; KEGG: phe:Phep_3890 polysaccharide export system outer membrane protein; PFAM: Polysaccharide export protein; SPTR: Polysaccharide export system outer membrane protein YP_004655051.1 PFAM: Polysaccharide biosynthesis/export protein; COGs: COG4464 Capsular polysaccharide biosynthesis protein; KEGG: psn:Pedsa_3849 PHP domain protein; SPTR: PHP domain protein YP_004655052.1 COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR005702:IPR003856; KEGG: phe:Phep_3891 capsular exopolysaccharide family; PFAM: Lipopolysaccharide biosynthesis; PRIAM: Non-specific protein-tyrosine kinase; SPTR: Capsular exopolysaccharide family; TIGRFAM: Exopolysaccharide synthesis protein YP_004655053.1 PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family YP_004655054.1 InterPro IPR013105:IPR001440:IPR019734; KEGG: sli:Slin_5634 hypothetical protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide TPR_2 repeat protein YP_004655055.1 PFAM: Tetratricopeptide repeat; COGs: COG0524 Sugar kinase ribokinase; InterPro IPR011611; KEGG: dfe:Dfer_3908 PfkB domain protein; PFAM: Carbohydrate/purine kinase; SPTR: PfkB domain protein YP_004655056.1 PFAM: pfkB family carbohydrate kinase; KEGG: amr:AM1_0502 hypothetical protein; SPTR: Membrane protein YP_004655057.1 PFAM: CAAX amino terminal protease; COGs: COG0113 Delta-aminolevulinic acid dehydratase; InterPro IPR001731; KEGG: dfe:Dfer_3652 delta-aminolevulinic acid dehydratase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase; PRIAM: Porphobilinogen synthase; SPTR: Delta-aminolevulinic acid dehydratase YP_004655058.1 PFAM: Delta-aminolevulinic acid dehydratase; InterPro IPR000782; KEGG: sli:Slin_4432 beta-Ig-H3/fasciclin; PFAM: FAS1 domain; SMART: FAS1 domain; SPTR: Beta-Ig-H3/fasciclin YP_004655059.1 PFAM: Fasciclin domain; KEGG: sli:Slin_0698 hypothetical protein; SPTR: uncharacterized protein YP_004655060.1 COGs: COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC; InterPro IPR011815:IPR001264:IPR001460:IPR009647; KEGG: dfe:Dfer_3903 penicillin-binding protein 1C; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; Penicillin-binding, C-terminal; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Penicillin-binding protein 1C; TIGRFAM: Penicillin-binding protein 1C YP_004655061.1 PFAM: Penicillin-Binding Protein C-terminus Family; Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein 1C; KEGG: dfe:Dfer_3254 hypothetical protein; SPTR: uncharacterized protein YP_004655062.1 COGs: COG2865 transcriptional regulator protein; InterPro IPR007421; KEGG: sli:Slin_5703 transcriptional regulator; PFAM: ATPase associated with various cellular activities, AAA-4; SPTR: transcriptional regulator YP_004655063.1 PFAM: Divergent AAA domain YP_004655064.1 COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: cpi:Cpin_3674 amino acid permease-associated region; PFAM: Amino acid permease-associated region; SPTR: Amino acid permease-associated region YP_004655065.1 PFAM: Amino acid permease; COGs: COG3222 conserved hypothetical protein; InterPro IPR018641; KEGG: gfo:GFO_3609 hypothetical protein; PFAM: Protein of unknown function DUF2064; SPTR: uncharacterized protein YP_004655066.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2064); KEGG: mtt:Ftrac_0149 hypothetical protein; SPTR: uncharacterized protein YP_004655067.1 InterPro IPR007730; KEGG: sli:Slin_5154 sporulation domain protein; PFAM: Sporulation/cell division region, bacteria; SPTR: Sporulation domain protein YP_004655068.1 PFAM: Sporulation related domain; COGs: COG1089 GDP-D-mannose dehydratase; InterPro IPR006368:IPR001509; KEGG: dfe:Dfer_3954 GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: GDP-mannose 4,6-dehydratase; SPTR: GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase YP_004655069.1 PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; COGs: COG0566 rRNA methylase; InterPro IPR004441:IPR013123:IPR001537; KEGG: dfe:Dfer_2661 RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SPTR: RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase TrmH, group 3 YP_004655070.1 PFAM: SpoU rRNA Methylase; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, , group 3; InterPro IPR013216; KEGG: ttr:Tter_2164 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11 YP_004655071.1 PFAM: O-methyltransferase; COGs: COG0211 Ribosomal protein L27; HAMAP: Ribosomal protein L27; InterPro IPR001684; KEGG: lby:Lbys_0882 lsu ribosomal protein l27p; PFAM: Ribosomal protein L27; SPTR: 50S ribosomal protein L27; TIGRFAM: Ribosomal protein L27 YP_004655072.1 PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; COGs: COG0261 Ribosomal protein L21; HAMAP: Ribosomal protein L21; InterPro IPR001787; KEGG: dfe:Dfer_4884 ribosomal protein L21; PFAM: Ribosomal protein L21; SPTR: 50S ribosomal protein L21; TIGRFAM: Ribosomal protein L21 YP_004655073.1 PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21; COGs: COG0266 Formamidopyrimidine-DNA glycosylase; InterPro IPR012319:IPR015886; KEGG: sli:Slin_5592 DNA-formamidopyrimidine glycosylase; PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; PRIAM: DNA-formamidopyrimidine glycosylase; SPTR: Formamidopyrimidine-DNA glycosylase YP_004655074.1 PFAM: Formamidopyrimidine-DNA glycosylase H2TH domain; Formamidopyrimidine-DNA glycosylase N-terminal domain; TIGRFAM: formamidopyrimidine-DNA glycosylase (fpg); COGs: COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; HAMAP: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; InterPro IPR003837; KEGG: sli:Slin_5449 glutamyl-tRNA(Gln) amidotransferase subunit C; PFAM: Glu-tRNAGln amidotransferase, C subunit; SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; TIGRFAM: Glu-tRNAGln amidotransferase, C subunit YP_004655075.1 PFAM: Glu-tRNAGln amidotransferase C subunit; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit; KEGG: sli:Slin_5879 hypothetical protein; SPTR: uncharacterized protein YP_004655076.1 KEGG: dfe:Dfer_4548 hypothetical protein; SPTR: uncharacterized protein YP_004655077.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_5177 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004655078.1 PFAM: Glycosyl transferase 2; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_3837 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004655079.1 PFAM: Glycosyl transferase 2; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_5180 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004655080.1 PFAM: Glycosyl transferase 2; InterPro IPR008775; KEGG: dfe:Dfer_3838 phytanoyl-CoA dioxygenase; PFAM: Phytanoyl-CoA dioxygenase; SPTR: Phytanoyl-CoA dioxygenase YP_004655081.1 PFAM: Phytanoyl-CoA dioxygenase (PhyH); KEGG: dfe:Dfer_3839 hypothetical protein; SPTR: uncharacterized protein YP_004655082.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dfe:Dfer_3840 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11 YP_004655083.1 PFAM: ubiE/COQ5 methyltransferase; KEGG: dfe:Dfer_3528 hypothetical protein; SPTR: uncharacterized protein YP_004655084.1 InterPro IPR001173; KEGG: dfe:Dfer_3529 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004655085.1 PFAM: Glycosyl transferase 2; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_3530 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase YP_004655086.1 PFAM: NAD dependent epimerase/dehydratase; COGs: COG5002 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: sli:Slin_5610 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase YP_004655087.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; HAMAP: Ribosomal protein L33; InterPro IPR001705; KEGG: dfe:Dfer_3609 ribosomal protein L33; PFAM: Ribosomal protein L33; SPTR: 50S ribosomal protein L33; TIGRFAM: Ribosomal protein L33 YP_004655088.1 PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; KEGG: dfe:Dfer_3608 hypothetical protein; SPTR: uncharacterized protein YP_004655089.1 COGs: COG0552 Signal recognition particle GTPase; InterPro IPR004390:IPR013822:IPR000897:IPR003593; KEGG: dfe:Dfer_3607 signal recognition particle-docking protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; SMART: ATPase, AAA+ type, core; SPTR: Signal recognition particle-docking protein FtsY; TIGRFAM: Cell division transporter substrate-binding protein FtsY YP_004655090.1 PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY YP_004655091.1 InterPro IPR010869:IPR006311; KEGG: sli:Slin_5933 hypothetical protein; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein YP_004655092.1 PFAM: Protein of unknown function (DUF1501); COGs: COG2852 conserved hypothetical protein; InterPro IPR007569; KEGG: tra:Trad_2714 hypothetical protein; PFAM: Protein of unknown function DUF559; SPTR: uncharacterized protein YP_004655093.1 PFAM: Protein of unknown function (DUF559); InterPro IPR011429:IPR011444; KEGG: dfe:Dfer_1334 protein of unknown function DUF1549; PFAM: Protein of unknown function DUF1549; Cytochrome C, Planctomycete; SPTR: uncharacterized protein YP_004655094.1 PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553); KEGG: sli:Slin_1721 hypothetical protein; SPTR: uncharacterized protein YP_004655095.1 KEGG: sli:Slin_1722 hypothetical protein; SPTR: uncharacterized protein YP_004655096.1 PFAM: Protein of unknown function (DUF3500); COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: cpi:Cpin_2661 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004655097.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: bfs:BF3660 hypothetical protein; PFAM: Signal transduction histidine kinase, internal region; SPTR: membrane protein YP_004655098.1 PFAM: Histidine kinase YP_004655099.1 COGs: COG2828 conserved hypothetical protein; InterPro IPR007400; KEGG: sli:Slin_4025 hypothetical protein; PFAM: PrpF protein; SPTR: uncharacterized protein; manually curated YP_004655100.1 PFAM: PrpF protein; COGs: COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase; InterPro IPR006115:IPR015814; KEGG: sli:Slin_4024 6-phosphogluconate dehydrogenase NAD-binding protein; PFAM: Phosphogluconate dehydrogenase, NAD-binding, , C-terminal; 6-phosphogluconate dehydrogenase, NAD-binding; SPTR: 6-phosphogluconate dehydrogenase NAD-binding protein YP_004655101.1 PFAM: Domain of unknown function (DUF1932); NAD binding domain of 6-phosphogluconate dehydrogenase; COGs: COG0684 Demethylmenaquinone methyltransferase; InterPro IPR005493; KEGG: sli:Slin_4023 dimethylmenaquinone methyltransferase; PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; SPTR: Dimethylmenaquinone methyltransferase YP_004655102.1 PFAM: Demethylmenaquinone methyltransferase; COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: sli:Slin_4022 LmbE family protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR: LmbE family protein YP_004655103.1 PFAM: GlcNAc-PI de-N-acetylase; InterPro IPR012657; KEGG: fjo:Fjoh_0085 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02436 YP_004655104.1 PFAM: S23 ribosomal protein; TIGRFAM: TIGR02436 family protein; InterPro IPR004360; KEGG: sli:Slin_4021 catechol 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; PRIAM: Biphenyl-2,3-diol 1,2-dioxygenase; SPTR: Catechol 2,3-dioxygenase YP_004655105.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: catechol 2,3 dioxygenase; KEGG: nla:NLA_20040 hypothetical protein; SPTR: Alpha/beta superfamily hydrolase YP_004655106.1 PFAM: alpha/beta hydrolase fold; KEGG: sli:Slin_3122 hypothetical protein; SPTR: uncharacterized protein YP_004655107.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: sli:Slin_4019 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004655108.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism; InterPro IPR013987:IPR013988:IPR004624; KEGG: lby:Lbys_2347 alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein, C-terminal; PhnA protein, N-terminal; SPTR: Alkylphosphonate utilization operon protein PhnA; TIGRFAM: PhnA protein YP_004655109.1 PFAM: PhnA protein; PhnA Zinc-Ribbon; TIGRFAM: alkylphosphonate utilization operon protein PhnA; COGs: COG4099 peptidase; InterPro IPR003140; KEGG: rbi:RB2501_02810 glucan-binding protein D; BglB-like protein; PFAM: Phospholipase/carboxylesterase; SPTR: glucan-binding protein D; BglB-like protein YP_004655110.1 PFAM: Phospholipase/Carboxylesterase; COGs: COG0288 Carbonic anhydrase; InterPro IPR001765; KEGG: cao:Celal_1252 carbonate dehydratase; PFAM: Carbonic anhydrase; PRIAM: Carbonate dehydratase; SPTR: Carbonic anhydrase YP_004655111.1 PFAM: Carbonic anhydrase; KEGG: dfe:Dfer_3073 hypothetical protein; SPTR: uncharacterized protein YP_004655112.1 COGs: COG0349 Ribonuclease D; InterPro IPR002562; KEGG: sfu:Sfum_0414 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease; SPTR: 3'-5' exonuclease; manually curated YP_004655113.1 PFAM: 3'-5' exonuclease; TIGRFAM: ribonuclease D; COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR004176:IPR003959:IPR013093:IPR019489:IPR 003593:IPR017730; KEGG: dfe:Dfer_2969 ATP-dependent chaperone ClpB; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent chaperone ClpB; TIGRFAM: Chaperonin ClpB YP_004655114.1 PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB; InterPro IPR008538; KEGG: sli:Slin_4968 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein YP_004655115.1 PFAM: Protein of unknown function (DUF820); KEGG: tva:TVAG_073360 hypothetical protein; SPTR: uncharacterized protein YP_004655116.1 PFAM: PBCV-specific basic adaptor domain; KEGG: sli:Slin_6276 hypothetical protein; SPTR: uncharacterized protein YP_004655117.1 PFAM: FG-GAP repeat; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sli:Slin_2585 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1 YP_004655118.1 PFAM: Glycosyl transferases group 1; KEGG: dfe:Dfer_0255 hypothetical protein; SPTR: uncharacterized protein YP_004655119.1 KEGG: dfe:Dfer_2782 hypothetical protein; SPTR: uncharacterized protein YP_004655120.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_3959 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004655121.1 PFAM: Glycosyl transferase 2; InterPro IPR001296; KEGG: lby:Lbys_1846 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1 YP_004655122.1 PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sli:Slin_2582 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1 YP_004655123.1 PFAM: Glycosyl transferases group 1; KEGG: lby:Lbys_3142 glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1 YP_004655124.1 KEGG: dfe:Dfer_2778 glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1 YP_004655125.1 KEGG: dfe:Dfer_4231 hypothetical protein; SPTR: uncharacterized protein YP_004655126.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dfe:Dfer_2777 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1 YP_004655127.1 PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dfe:Dfer_3551 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1 YP_004655128.1 PFAM: Glycosyl transferases group 1; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: dfe:Dfer_3552 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004655129.1 PFAM: Glycosyl transferase 2; COGs: COG1043 Acyl-(acyl carrier protein); InterPro IPR001451; KEGG: dfe:Dfer_2776 acyl-(acyl carrier protein)-like protein; SPTR: Acyl-(Acyl carrier protein)-like protein YP_004655130.1 PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; InterPro IPR014985; KEGG: sli:Slin_2574 WbqC-like family protein; PFAM: WbqC-like protein family; SPTR: WbqC-like family protein YP_004655131.1 PFAM: WbqC-like protein family; KEGG: sli:Slin_2573 hypothetical protein; SPTR: uncharacterized protein YP_004655132.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: dfe:Dfer_2773 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase YP_004655133.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_2772 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Teichoic-acid-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related YP_004655134.1 PFAM: ABC transporter; COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525; KEGG: sli:Slin_2570 ABC transporter; PFAM: ABC-2 type transporter; SPTR: ABC-2 type transporter YP_004655135.1 PFAM: ABC-2 type transporter; KEGG: dfe:Dfer_2770 hypothetical protein; SPTR: uncharacterized protein YP_004655136.1 COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715:IPR019554; KEGG: sli:Slin_2568 ligand-binding protein; PFAM: Polysaccharide export protein; Soluble ligand binding domain; SPTR: Soluble ligand binding domain protein YP_004655137.1 PFAM: Polysaccharide biosynthesis/export protein; SLBB domain; COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterPro IPR003594:IPR013506:IPR001241; KEGG: sli:Slin_2567 DNA topoisomerase type II subunit alpha B region 2 domain protein; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like; SPTR: DNA topoisomerase type IIA subunit B region 2 domain protein YP_004655138.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; SPTR: Transposase IS4 family protein YP_004655139.1 COGs: COG3225 ABC-type uncharacterized transport system involved in gliding motility auxiliary component; InterPro IPR019196:IPR019863; KEGG: dfe:Dfer_3719 gliding motility protein, ABC-related protein; PFAM: ABC-type uncharacterised transport system; SPTR: Gliding motility protein, ABC-related protein; TIGRFAM: Gliding-associated ABC transporter substrate-binding GldG YP_004655140.1 PFAM: ABC-type uncharacterized transport system; TIGRFAM: gliding-associated ABC transporter substrate-binding component GldG; COGs: COG3169 conserved hypothetical protein; InterPro IPR007437; KEGG: nde:NIDE0571 hypothetical protein; PFAM: Protein of unknown function DUF486; SPTR: uncharacterized protein YP_004655141.1 PFAM: Protein of unknown function, DUF486; COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; InterPro IPR006148:IPR003737:IPR018322; KEGG: dfe:Dfer_3813 glucosamine-6-phosphate deaminase-like protein; PFAM: Glucosamine/galactosamine-6-phosphate isomerase; N-acetylglucosaminyl phosphatidylinositol deacetylase; PRIAM: Glucosamine-6-phosphate deaminase; SPTR: Glucosamine-6-phosphate isomerase; TIGRFAM: Glucosamine-6-phosphate isomerase, subgroup YP_004655142.1 PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; GlcNAc-PI de-N-acetylase; TIGRFAM: glucosamine-6-phosphate isomerase; COGs: COG3142 Uncharacterized protein involved in copper resistance; HAMAP: Copper homeostasis protein cutC; InterPro IPR005627; KEGG: sli:Slin_5700 CutC family protein; PFAM: CutC; SPTR: Copper homeostasis protein CutC YP_004655143.1 PFAM: CutC family; COGs: COG5267 conserved hypothetical protein; InterPro IPR014917; KEGG: sli:Slin_1188 hypothetical protein; PFAM: Protein of unknown function DUF1800; SPTR: uncharacterized protein YP_004655144.1 PFAM: Protein of unknown function (DUF1800); COGs: COG4102 conserved hypothetical protein; InterPro IPR010869; KEGG: sli:Slin_1189 hypothetical protein; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein YP_004655145.1 PFAM: Protein of unknown function (DUF1501); KEGG: dfe:Dfer_3784 hypothetical protein; SPTR: uncharacterized protein YP_004655146.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_4568 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor YP_004655147.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004655148.1 COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); HAMAP: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; InterPro IPR003699; KEGG: sli:Slin_1175 S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: Queuosine biosynthesis protein YP_004655149.1 PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; HAMAP: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro IPR001228; KEGG: sli:Slin_1174 4-diphosphocytidyl-2C-methyl-D-erythritolsynthase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_004655150.1 PFAM: Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; COGs: COG1703 periplasmic protein kinase ArgK and related GTPase of G3E family; InterPro IPR005129; KEGG: sli:Slin_1173 LAO/AO transporter ATPase; PFAM: ArgK protein; SPTR: LAO/AO transport system ATPase; TIGRFAM: ArgK protein YP_004655151.1 PFAM: ArgK protein; TIGRFAM: LAO/AO transport system ATPase YP_004655152.1 KEGG: sli:Slin_5064 hypothetical protein; SPTR: Conserved repeat domain protein YP_004655153.1 PFAM: Pregnancy-associated plasma protein-A YP_004655154.1 COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); HAMAP: Monofunctional biosynthetic peptidoglycan transglycosylase; InterPro IPR001264:IPR011812; KEGG: dfe:Dfer_2412 monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: Glycosyl transferase, family 51; SPTR: Monofunctional biosynthetic peptidoglycan transglycosylase; TIGRFAM: Monofunctional biosynthetic peptidoglycan transglycosylase; manually curated YP_004655155.1 PFAM: Transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR007197:IPR010723:IPR006638:IPR004559; KEGG: sli:Slin_2843 oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM; HemN, C-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: Oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase YP_004655156.1 PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: sli:Slin_0393 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein YP_004655157.1 PFAM: OmpA family; KEGG: cly:Celly_1381 hypothetical protein; SPTR: uncharacterized protein YP_004655158.1 KEGG: cly:Celly_1381 hypothetical protein; SPTR: Membrane protein YP_004655159.1 COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: cly:Celly_1377 PadR-like family transcriptional regulator; PFAM: Transcriptional regulator PadR N-terminal-like; SPTR: uncharacterized protein YP_004655160.1 PFAM: Transcriptional regulator PadR-like family; KEGG: sli:Slin_6392 hypothetical protein; SPTR: uncharacterized protein YP_004655161.1 COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: dfe:Dfer_3657 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: Band 7 protein YP_004655162.1 PFAM: SPFH domain / Band 7 family; COGs: COG1190 Lysyl-tRNA synthetase (class II); HAMAP: Lysyl-tRNA synthetase; InterPro IPR004365:IPR004364:IPR002313; KEGG: dfe:Dfer_4009 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: Lysine--tRNA ligase; SPTR: Lysyl-tRNA synthetase; TIGRFAM: Lysyl-tRNA synthetase, class II YP_004655163.1 PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial; COGs: COG1018 Flavodoxin reductase (ferredoxin-NADPH reductase) family 1; InterPro IPR008333:IPR001433:IPR001041; KEGG: cpi:Cpin_0377 ferredoxin; PFAM: Ferredoxin; Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region; PRIAM: Nitric oxide dioxygenase; SPTR: Ferredoxin YP_004655164.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR000192; KEGG: sli:Slin_1497 cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Cysteine desulfurase; SPTR: Cysteine desulfurase YP_004655165.1 PFAM: Aminotransferase class-V; COGs: COG0429 hydrolase of the alpha/beta-hydrolase fold; InterPro IPR000073; KEGG: sli:Slin_5174 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein YP_004655166.1 PFAM: alpha/beta hydrolase fold; KEGG: scl:sce2233 hypothetical protein; SPTR: uncharacterized protein YP_004655167.1 COGs: COG0431 flavoprotein; InterPro IPR005025; KEGG: mtt:Ftrac_3110 nadph-dependent fmn reductase; PFAM: NADPH-dependent FMN reductase; SPTR: NADPH-dependent FMN reductase YP_004655168.1 PFAM: NADPH-dependent FMN reductase; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: dfe:Dfer_3666 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004655169.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; InterPro IPR018764; KEGG: dfe:Dfer_3665 hypothetical protein; PFAM: Anti-sigma K factor RskA; SPTR: uncharacterized protein YP_004655170.1 PFAM: Anti-sigma-K factor rskA; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR008030; KEGG: lby:Lbys_0127 NmrA family protein; SPTR: NmrA family protein YP_004655171.1 PFAM: NmrA-like family; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: psn:Pedsa_1651 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; manually curated YP_004655172.1 PFAM: Cyclic nucleotide-binding domain; COGs: COG0348 Polyferredoxin; InterPro IPR001450; KEGG: mtt:Ftrac_3598 hypothetical protein; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: 4Fe-4S binding domain protein YP_004655173.1 COGs: COG0355 F0F1-type ATP synthase epsilon subunit (mitochondrial delta subunit); InterPro IPR020546; KEGG: dfe:Dfer_3764 H+transporting two-sector ATPase delta/epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; SPTR: H+transporting two-sector ATPase delta/epsilon subunit YP_004655174.1 PFAM: ATP synthase, Delta/Epsilon chain, beta-sandwich domain; TIGRFAM: ATP synthase, F1 epsilon subunit (delta in mitochondria); COGs: COG0055 F0F1-type ATP synthase beta subunit; HAMAP: ATPase, F1 complex, beta subunit; InterProIPR005722:IPR004100:IPR000194:IPR000793:IPR 003593; KEGG: dfe:Dfer_3763 F0F1 ATP synthase subunit beta; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP synthase subunit beta; TIGRFAM: ATPase, F1 complex, beta subunit YP_004655175.1 PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATP synthase, F1 beta subunit; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: sli:Slin_3618 histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: Histidine kinase YP_004655176.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG0373 Glutamyl-tRNA reductase; HAMAP: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; InterPro IPR000343:IPR015895:IPR006151:IPR015896; KEGG: sli:Slin_3619 glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal; SPTR: Glutamyl-tRNA reductase; TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase YP_004655177.1 PFAM: Glutamyl-tRNAGlu reductase, N-terminal domain; Shikimate / quinate 5-dehydrogenase; Glutamyl-tRNAGlu reductase, dimerisation domain; TIGRFAM: glutamyl-tRNA reductase; COGs: COG3191 L-aminopeptidase/D-esterase; InterPro IPR005321; KEGG: dfe:Dfer_3571 peptidase S58 DmpA; PFAM: Peptidase S58, DmpA; SPTR: Peptidase S58 DmpA YP_004655178.1 PFAM: Peptidase S58; KEGG: sli:Slin_4445 hypothetical protein; SPTR: uncharacterized protein YP_004655179.1 InterPro IPR000923; KEGG: sli:Slin_6137 blue (type 1) copper domain protein; PFAM: Blue (type 1) copper domain; SPTR: Blue (Type 1) copper domain protein YP_004655180.1 PFAM: Copper binding proteins, plastocyanin/azurin family; COGs: COG0039 Malate/lactate dehydrogenase; HAMAP: Malate dehydrogenase, NAD-dependent; InterPro IPR011275:IPR001236; KEGG: dfe:Dfer_4459 malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; PRIAM: L-lactate dehydrogenase; SPTR: Malate dehydrogenase; TIGRFAM: Malate dehydrogenase, NAD-dependent YP_004655181.1 PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase, NAD-dependent; KEGG: sli:Slin_6050 hypothetical protein; SPTR: uncharacterized protein YP_004655182.1 COGs: COG0754 Glutathionylspermidine synthase; InterPro IPR005494; KEGG: sli:Slin_5050 glutathionylspermidine synthase; PFAM: Glutathionylspermidine synthase; SPTR: Glutathionylspermidine synthase YP_004655183.1 PFAM: Glutathionylspermidine synthase YP_004655185.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: sli:Slin_1838 ABC transporter; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein YP_004655186.1 PFAM: ABC transporter; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: sli:Slin_1839 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004655187.1 PFAM: Predicted permease YP_004655188.1 COGs: COG0845 Membrane-fusion protein; KEGG: sli:Slin_1840 efflux transporter RND family, MFP subunit; SPTR: Efflux transporter, RND family, MFP subunit YP_004655189.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_1841 hypothetical protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane protein-like protein YP_004655190.1 PFAM: Outer membrane efflux protein; KEGG: sli:Slin_5940 hypothetical protein; SPTR: uncharacterized protein YP_004655191.1 KEGG: sli:Slin_6770 hypothetical protein; SPTR: uncharacterized protein YP_004655192.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: ppn:Palpr_0551 heavy metal efflux pump, czca family; PFAM: Outer membrane efflux protein; SPTR: Cation efflux system protein CzcA; manually curated YP_004655193.1 PFAM: Outer membrane efflux protein; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: mag:amb1249 membrane-fusion protein; PFAM: Secretion protein HlyD; SPTR: uncharacterized protein; TIGRFAM: Secretion protein HlyD YP_004655194.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG3696 silver efflux pump; InterPro IPR001036:IPR004763; KEGG: scl:sce8113 cation efflux system protein; PFAM: Acriflavin resistance protein; SPTR: Cation efflux system protein; TIGRFAM: Heavy metal efflux pump CzcA YP_004655195.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: psn:Pedsa_0531 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein YP_004655196.1 PFAM: TonB-dependent Receptor Plug Domain; KEGG: sli:Slin_6747 hypothetical protein; SPTR: uncharacterized protein YP_004655197.1 COGs: COG2217 Cation transport ATPase; InterProIPR008250:IPR005834:IPR006404:IPR006416:IPR 001757; KEGG: dfe:Dfer_1187 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; PRIAM: Zinc-exporting ATPase; SPTR: Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter YP_004655198.1 PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; KEGG: mtt:Ftrac_2349 hypothetical protein; SPTR: uncharacterized protein YP_004655199.1 PFAM: Domain of unknown function (DU1801); COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_5203 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein YP_004655200.1 PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG0306 Phosphate/sulphate permease; InterPro IPR001204; KEGG: sli:Slin_4985 phosphate transporter; PFAM: Phosphate transporter; SPTR: Phosphate transporter YP_004655201.1 PFAM: Phosphate transporter family; KEGG: dfe:Dfer_4010 hypothetical protein; SPTR: uncharacterized protein YP_004655202.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: sli:Slin_4552 aldo/keto reductase; PFAM: Aldo/keto reductase; SPTR: Aldo/keto reductase YP_004655203.1 PFAM: Aldo/keto reductase; COGs: COG4325 membrane protein; InterPro IPR018723; KEGG: alv:Alvin_1166 hypothetical protein; PFAM: Protein of unknown function DUF2254, membrane; SPTR: uncharacterized protein YP_004655204.1 PFAM: Predicted membrane protein (DUF2254); InterPro IPR000620; KEGG: sli:Slin_5227 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: uncharacterized protein YP_004655205.1 PFAM: EamA-like transporter family; COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR002155; KEGG: mtt:Ftrac_1202 acetyl-CoA acetyltransferase; PRIAM: Acetyl-CoA C-acetyltransferase; SPTR: Acetyl-CoA acetyltransferase; TIGRFAM: Thiolase YP_004655208.1 PFAM: Helix-turn-helix YP_004655209.1 KEGG: cpw:CPC735_028320 ankyrin repeat containing protein; SPTR: Ankyrin repeat protein YP_004655210.1 COGs: COG0284 Orotidine-5'-phosphate decarboxylase; InterPro IPR001754:IPR011995; KEGG: dfe:Dfer_2966 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase, core; PRIAM: Orotidine-5'-phosphate decarboxylase; SPTR: Orotidine 5'-phosphate decarboxylase; TIGRFAM: Orotidine 5'-phosphate decarboxylase, subfamily 2, core YP_004655211.1 PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 2; COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: dfe:Dfer_5140 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase YP_004655212.1 PFAM: Phosphoglycerate mutase; COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: dfe:Dfer_5139 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein YP_004655213.1 PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1; KEGG: sli:Slin_5813 isoamylase N-terminal domain-containing protein; SPTR: Isoamylase N-terminal domain-containing protein YP_004655214.1 PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); COGs: COG2346 Truncated hemoglobins; InterPro IPR001486; KEGG: mtt:Ftrac_1649 globin; PFAM: Globin, truncated bacterial-like; SPTR: Globin YP_004655215.1 PFAM: Bacterial-like globin; KEGG: fjo:Fjoh_0927 hypothetical protein; SPTR: uncharacterized protein YP_004655216.1 PFAM: Protein of unknown function, DUF255; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: lby:Lbys_1558 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor YP_004655217.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; KEGG: sli:Slin_4560 hypothetical protein; SPTR: uncharacterized protein YP_004655218.1 KEGG: mxa:MXAN_1582 hypothetical protein; SPTR: uncharacterized protein YP_004655219.1 COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR005481:IPR005479:IPR005482; KEGG: sli:Slin_3536 carbamoyl-phosphate synthase L chain ATP-binding protein; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; PRIAM: Pyruvate carboxylase; SPTR: Carbamoyl-phosphate synthase L chain ATP-binding protein YP_004655220.1 PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit; Prodigal; manually curated YP_004655221.1 PFAM: AhpC/TSA family; InterPro IPR001173; KEGG: sli:Slin_5753 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004655222.1 PFAM: Glycosyl transferase 2; COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR006963:IPR006656:IPR006657; KEGG: dmr:Deima_1224 nitrate reductase; PFAM: Molydopterin dinucleotide-binding region; Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; PRIAM: Nitrate reductase; SPTR: Oxidoreductase, molybdopterin-binding YP_004655223.1 PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; COGs: COG0254 Ribosomal protein L31; HAMAP: 50S ribosomal protein L31 type B; InterPro IPR002150; KEGG: lby:Lbys_1177 lsu ribosomal protein l31p; PFAM: Ribosomal protein L31; SPTR: 50S ribosomal protein L31 type B; TIGRFAM: Ribosomal protein L31 YP_004655224.1 PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31; InterPro IPR001123; KEGG: scl:sce2066 LysE type translocator; PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: LysE type translocator YP_004655225.1 PFAM: LysE type translocator; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_4562 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004655226.1 PFAM: short chain dehydrogenase; COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: sli:Slin_0093 sodium symporter; PFAM: Bile acid:sodium symporter; SPTR: Bile acid:sodium symporter YP_004655227.1 PFAM: Sodium Bile acid symporter family; TIGRFAM: bile acid transporter; COGs: COG0505 Carbamoylphosphate synthase small subunit; InterPro IPR002474:IPR000991:IPR006274; KEGG: dfe:Dfer_4372 carbamoyl phosphate synthase small subunit; PFAM: Glutamine amidotransferase class-I, C-terminal; Carbamoyl phosphate synthase, small subunit, N-terminal; PRIAM: Carbamoyl-phosphate synthase (glutamine-hydrolyzing); SPTR: Carbamoyl-phosphate synthase, small subunit; TIGRFAM: Carbamoyl phosphate synthase, small subunit YP_004655228.1 PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit; COGs: COG0203 Ribosomal protein L17; HAMAP: 50S ribosomal protein L17; InterPro IPR000456; KEGG: dfe:Dfer_4371 ribosomal protein L17; PFAM: Ribosomal protein L17; SPTR: 50S ribosomal protein L17; TIGRFAM: Ribosomal protein L17 YP_004655229.1 PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17; COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit; HAMAP: DNA-directed RNA polymerase, alpha subunit; InterProIPR011773:IPR011261:IPR011262:IPR011260:IPR 011263; KEGG: sli:Slin_5760 DNA-directed RNA polymerase, subunit alpha; PFAM: DNA-directed RNA polymerase, insert; DNA-directed RNA polymerase, dimerisation; RNA polymerase, alpha subunit, C-terminal; SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; SPTR: DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, alpha subunit YP_004655230.1 PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type; COGs: COG0522 Ribosomal protein S4 and related protein; InterPro IPR001912:IPR002942:IPR005709; KEGG: sli:Slin_5761 ribosomal protein S4; PFAM: Ribosomal protein S4; RNA-binding S4; SMART: RNA-binding S4; SPTR: 30S ribosomal protein S4; TIGRFAM: Ribosomal protein S4, bacterial-type YP_004655231.1 PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type; COGs: COG0100 Ribosomal protein S11; InterPro IPR001971:IPR019981; KEGG: dfe:Dfer_4368 30S ribosomal protein S11; PFAM: Ribosomal protein S11; SPTR: 30S ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type YP_004655232.1 PFAM: Ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; COGs: COG0099 Ribosomal protein S13; InterPro IPR001892:IPR019980; KEGG: dfe:Dfer_4367 30S ribosomal protein S13; PFAM: Ribosomal protein S13; SPTR: 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type YP_004655233.1 PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13; HAMAP: Ribosomal protein L36; InterPro IPR000473; KEGG: psn:Pedsa_2125 LSU ribosomal protein L36P; PFAM: Ribosomal protein L36; SPTR: 50S ribosomal protein L36; TIGRFAM: Ribosomal protein L36; manually curated YP_004655234.1 PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type; COGs: COG0361 Translation initiation factor 1 (IF-1); HAMAP: Translation initiation factor IF-1; InterPro IPR004368:IPR006196; KEGG: sli:Slin_5765 translation initiation factor IF-1; PFAM: S1, IF1 type; SPTR: Translation initiation factor IF-1; TIGRFAM: Translation initiation factor IF-1 YP_004655235.1 PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1; COGs: COG0024 Methionine aminopeptidase; InterPro IPR000994:IPR002467; KEGG: sli:Slin_5766 methionine aminopeptidase, type I; PFAM: Peptidase M24, structural domain; PRIAM: Methionyl aminopeptidase; SPTR: Methionine aminopeptidase; TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1 YP_004655236.1 PFAM: Metallopeptidase M24; TIGRFAM: methionine aminopeptidase, type I; COGs: COG0201 Preprotein translocase subunit SecY; InterPro IPR002208; KEGG: dfe:Dfer_4363 preprotein translocase subunit SecY; PFAM: SecY protein; SPTR: Preprotein translocase, SecY subunit; TIGRFAM: SecY protein YP_004655237.1 PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit; COGs: COG0200 Ribosomal protein L15; InterPro IPR001196:IPR005749; KEGG: sli:Slin_5768 ribosomal protein L15; PFAM: Ribosomal protein L15; SPTR: 50S ribosomal protein L15; TIGRFAM: Ribosomal protein L15, bacterial-type YP_004655238.1 PFAM: Ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle; COGs: COG1841 Ribosomal protein L30/L7E; InterPro IPR000517:IPR005996; KEGG: dfe:Dfer_4361 ribosomal protein L30; PFAM: Ribosomal protein L30p/L7e, conserved region; SPTR: 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type YP_004655239.1 PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle; COGs: COG0098 Ribosomal protein S5; InterPro IPR013810:IPR005324:IPR005712; KEGG: sli:Slin_5770 ribosomal protein S5; PFAM: Ribosomal protein S5, N-terminal; Ribosomal protein S5, C-terminal; SPTR: 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type YP_004655240.1 PFAM: Ribosomal protein S5, C-terminal domain; Ribosomal protein S5, N-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type; COGs: COG0256 Ribosomal protein L18; InterPro IPR005484:IPR004389; KEGG: dfe:Dfer_4359 ribosomal protein L18; PFAM: Ribosomal protein L18/L5; SPTR: 50S ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial YP_004655241.1 PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type; COGs: COG0097 Ribosomal protein L6P/L9E; InterPro IPR020040:IPR019906; KEGG: sli:Slin_5772 ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain; SPTR: 50S ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type YP_004655242.1 PFAM: Ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type; COGs: COG0096 Ribosomal protein S8; InterPro IPR000630; KEGG: sli:Slin_5773 ribosomal protein S8; PFAM: Ribosomal protein S8; SPTR: 30S ribosomal protein S8 YP_004655243.1 PFAM: Ribosomal protein S8; COGs: COG0199 Ribosomal protein S14; HAMAP: 30S ribosomal protein S14; InterPro IPR001209; KEGG: sli:Slin_5774 ribosomal protein S14; PFAM: Ribosomal protein S14; SPTR: 30S ribosomal protein S14 YP_004655244.1 PFAM: Ribosomal protein S14p/S29e; COGs: COG0094 Ribosomal protein L5; InterPro IPR002132; KEGG: sli:Slin_5775 ribosomal protein L5; PFAM: Ribosomal protein L5; SPTR: 50S ribosomal protein L5 YP_004655245.1 PFAM: ribosomal L5P family C-terminus; Ribosomal protein L5; COGs: COG0198 Ribosomal protein L24; InterPro IPR005824:IPR003256; KEGG: lby:Lbys_1819 lsu ribosomal protein l24p; PFAM: KOW; SMART: KOW; SPTR: 50S ribosomal protein L24; TIGRFAM: Ribosomal protein L24 YP_004655246.1 PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle; COGs: COG0093 Ribosomal protein L14; InterPro IPR000218:IPR005745; KEGG: shg:Sph21_1725 ribosomal protein L14; PFAM: Ribosomal protein L14b/L23e; SPTR: 50S ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type YP_004655247.1 PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle; COGs: COG0186 Ribosomal protein S17; InterPro IPR000266:IPR019984; KEGG: sli:Slin_5778 30S ribosomal protein S17; PFAM: Ribosomal protein S17; SPTR: 30S ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type YP_004655248.1 PFAM: Ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; InterPro IPR001854; KEGG: chu:CHU_3154 50S ribosomal protein L29; PFAM: Ribosomal protein L29; SPTR: 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29 YP_004655249.1 PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; COGs: COG0197 Ribosomal protein L16/L10E; HAMAP: Ribosomal protein L16; InterPro IPR000114:IPR016180; KEGG: dfe:Dfer_4350 50S ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; SPTR: 50S ribosomal protein L16; TIGRFAM: Ribosomal protein L16 YP_004655250.1 PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle; COGs: COG0092 Ribosomal protein S3; InterProIPR008282:IPR004044:IPR001351:IPR004087:IPR 005704; KEGG: dfe:Dfer_4349 30S ribosomal protein S3; PFAM: Ribosomal protein S3, C-terminal; Ribosomal protein S3, N-terminal; K Homology, type 2; SMART: K Homology; SPTR: 30S ribosomal protein S3; TIGRFAM: Ribosomal protein S3, bacterial YP_004655251.1 PFAM: KH domain; Ribosomal protein S3, C-terminal domain; Ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type; COGs: COG0091 Ribosomal protein L22; InterPro IPR001063:IPR005727; KEGG: dfe:Dfer_4348 ribosomal protein L22; PFAM: Ribosomal protein L22/L17; SPTR: 50S ribosomal protein L22; TIGRFAM: Ribosomal protein L22, bacterial-type YP_004655252.1 PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type; COGs: COG0185 Ribosomal protein S19; InterPro IPR002222:IPR005732; KEGG: mtt:Ftrac_3036 SSU ribosomal protein s19p; PFAM: Ribosomal protein S19/S15; SPTR: 30S ribosomal protein S19; TIGRFAM: Ribosomal protein S19, bacterial-type YP_004655253.1 PFAM: Ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle; COGs: COG0090 Ribosomal protein L2; InterPro IPR002171:IPR005880; KEGG: dfe:Dfer_4346 ribosomal protein L2; PFAM: Ribosomal protein L2; SPTR: 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type YP_004655254.1 PFAM: Ribosomal Proteins L2, RNA binding domain; Ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar; COGs: COG0089 Ribosomal protein L23; InterPro IPR013025; KEGG: lby:Lbys_1828 lsu ribosomal protein l23p; PFAM: Ribosomal protein L25/L23; SPTR: 50S ribosomal protein L23 YP_004655255.1 PFAM: Ribosomal protein L23; COGs: COG0088 Ribosomal protein L4; InterPro IPR002136; KEGG: dfe:Dfer_4344 50S ribosomal protein L4; PFAM: Ribosomal protein L4/L1e; SPTR: 50S ribosomal protein L4 YP_004655256.1 PFAM: Ribosomal protein L4/L1 family; TIGRFAM: 50S ribosomal protein L4, bacterial/organelle; COGs: COG0087 Ribosomal protein L3; InterPro IPR000597:IPR019927; KEGG: dfe:Dfer_4343 50S ribosomal protein L3; PFAM: Ribosomal protein L3; SPTR: 50S ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type YP_004655257.1 PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial YP_004655258.1 KEGG: dfe:Dfer_4259 hypothetical protein; SPTR: uncharacterized protein YP_004655259.1 COGs: COG0788 Formyltetrahydrofolate hydrolase; InterPro IPR002912:IPR002376:IPR004810; KEGG: dfe:Dfer_3669 formyltetrahydrofolate deformylase; PFAM: Formyl transferase, N-terminal; Amino acid-binding ACT; PRIAM: Formyltetrahydrofolate deformylase; SPTR: Formyltetrahydrofolate deformylase; TIGRFAM: Formyltetrahydrofolate deformylase YP_004655260.1 PFAM: Formyl transferase; TIGRFAM: formyltetrahydrofolate deformylase; COGs: COG4146 symporter; InterPro IPR001734:IPR019900; KEGG: dfe:Dfer_3072 SSS sodium solute transporter superfamily; PFAM: Sodium/solute symporter; SPTR: SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup YP_004655261.1 PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; COGs: COG5267 conserved hypothetical protein; InterPro IPR014917; KEGG: sli:Slin_5993 hypothetical protein; PFAM: Protein of unknown function DUF1800; SPTR: uncharacterized protein YP_004655262.1 PFAM: Protein of unknown function (DUF1800); COGs: COG4102 conserved hypothetical protein; InterPro IPR010869; KEGG: sli:Slin_5994 hypothetical protein; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein YP_004655263.1 PFAM: Protein of unknown function (DUF1501); COGs: COG1778 Low specificity phosphatase (HAD superfamily); KEGG: sli:Slin_2801 low specificity phosphatase (HAD superfamily)-like protein; SPTR: Low specificity phosphatase (HAD superfamily)-like protein YP_004655264.1 COGs: COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase; HAMAP: NAD(P)H-quinone oxidoreductase subunit K; InterPro IPR006137:IPR006138; KEGG: dfe:Dfer_2472 NADH-quinone oxidoreductase, B subunit; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit B 1; TIGRFAM: NADH:ubiquinone oxidoreductase, 20kDa subunit YP_004655265.1 PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; COGs: COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit J; InterPro IPR001268:IPR010218; KEGG: sli:Slin_6042 NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit; SPTR: NADH-quinone oxidoreductase subunit C 2; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C YP_004655266.1 PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; KEGG: dfe:Dfer_3979 hypothetical protein; SPTR: uncharacterized protein YP_004655267.1 PFAM: Protein of unknown function (DUF2795) YP_004655268.1 COGs: COG0599 gamma-carboxymuconolactone decarboxylase subunit; InterPro IPR003779; KEGG: mtt:Ftrac_2384 alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; SPTR: Carboxymuconolactone decarboxylase YP_004655269.1 PFAM: Carboxymuconolactone decarboxylase; TIGRFAM: alkylhydroperoxidase AhpD family core domain; KEGG: sli:Slin_1861 hypothetical protein; SPTR: uncharacterized protein YP_004655270.1 PFAM: Mannosyl oligosaccharide glucosidase; COGs: COG0775 Nucleoside phosphorylase; InterPro IPR000845:IPR010049; KEGG: sli:Slin_0223 adenosylhomocysteine nucleosidase; PFAM: Nucleoside phosphorylase; PRIAM: Adenosylhomocysteine nucleosidase; SPTR: Adenosylhomocysteine nucleosidase; TIGRFAM: MTA/SAH nucleosidase YP_004655271.1 PFAM: Phosphorylase superfamily; TIGRFAM: futalosine nucleosidase; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; KEGG: psl:Psta_1770 hypothetical protein; SPTR: uncharacterized protein YP_004655272.1 PFAM: Neutral/alkaline non-lysosomal ceramidase; COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022; KEGG: dfe:Dfer_3637 propionyl-CoA carboxylase; PFAM: Carboxyl transferase; PRIAM: Methylcrotonoyl-CoA carboxylase; SPTR: Propionyl-CoA carboxylase YP_004655273.1 PFAM: Carboxyl transferase domain; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sat:SYN_02665 glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase YP_004655274.1 PFAM: Glycosyl transferase 2; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: nde:NIDE2697 capsular polysaccharide biosynthesis glycosyltransferase CapM; PFAM: Glycosyl transferase, group 1; SPTR: Capsular polysaccharide biosynthesis glycosyltransferase CapM YP_004655275.1 PFAM: Glycosyl transferases group 1; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: ran:Riean_0747 sugar transferase; PFAM: Bacterial sugar transferase; SPTR: General glycosylation pathway protein YP_004655276.1 PFAM: Bacterial sugar transferase; COGs: COG0663 Carbonic anhydrase/acetyltransferase isoleucine patch superfamily; InterPro IPR001451:IPR020019; KEGG: dfe:Dfer_3630 hexapeptide repeat-containing protein acetyltransferase; SPTR: Hexapeptide repeat-containing protein acetyltransferase; TIGRFAM: Sialic acid O-acyltransferase, NeuD YP_004655277.1 TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; KEGG: dfe:Dfer_4242 hypothetical protein; SPTR: uncharacterized protein YP_004655278.1 PFAM: Protein of unknown function (DUF1469); COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; HAMAP: UbiE/COQ5 methyltransferase; InterPro IPR004033; KEGG: dfe:Dfer_4023 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; SPTR: Menaquinone biosynthesis methyltransferase ubiE; TIGRFAM: UbiE/COQ5 methyltransferase YP_004655279.1 PFAM: ubiE/COQ5 methyltransferase; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; KEGG: dfe:Dfer_4024 PorT-related protein; SPTR: PorT-related protein YP_004655280.1 COGs: COG3491 Isopenicillin N synthase and related dioxygenase; InterPro IPR005123; KEGG: dfe:Dfer_2706 2OG-Fe(II) oxygenase; PFAM: Oxoglutarate/iron-dependent oxygenase; SPTR: 2OG-Fe(II) oxygenase YP_004655281.1 PFAM: 2OG-Fe(II) oxygenase superfamily; COGs: COG2059 Chromate transport protein ChrA; InterPro IPR003370:IPR014047; KEGG: sli:Slin_1603 chromate transporter chromate ion transporter (CHR) family; PFAM: Chromate transporter region; SPTR: Chromate transporter, chromate ion transporter (CHR) family; TIGRFAM: Chromate transporter YP_004655282.1 PFAM: Chromate transporter; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; InterPro IPR019500; KEGG: psn:Pedsa_0497 peptidase S46; PFAM: Peptidase S46; SPTR: Peptidase S46 YP_004655283.1 PFAM: Peptidase S46; COGs: COG1160 GTPase; HAMAP: GTP-binding, EngA; InterPro IPR016484:IPR002917:IPR005225; KEGG: sli:Slin_5226 ribosome-associated GTPase EngA; PFAM: GTP-binding protein, HSR1-related; SPTR: GTP-binding protein engA; TIGRFAM: GTP-binding, EngA; Small GTP-binding protein YP_004655284.1 PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain; InterPro IPR008815; KEGG: psn:Pedsa_3189 S23 ribosomal protein; PFAM: 23S rRNA-associated protein; SPTR: S23 ribosomal protein YP_004655285.1 PFAM: S23 ribosomal protein; COGs: COG1159 GTPase; HAMAP: GTP-binding protein Era; InterPro IPR005662:IPR002917:IPR004044:IPR005225; KEGG: dfe:Dfer_3856 GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2; SPTR: GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; Small GTP-binding protein YP_004655286.1 PFAM: KH domain; GTPase of unknown function; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain YP_004655287.1 COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: cao:Celal_2798 transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase YP_004655288.1 PFAM: Transposase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: sli:Slin_1698 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004655289.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839; KEGG: dfe:Dfer_3258 glycine C-acetyltransferase; PFAM: Aminotransferase, class I/II; PRIAM: Glycine C-acetyltransferase; SPTR: Glycine C-acetyltransferase YP_004655290.1 PFAM: Aminotransferase class I and II; KEGG: dfe:Dfer_3229 hypothetical protein; SPTR: uncharacterized protein YP_004655291.1 KEGG: bca:BCE_5389 O-antigen polymerase (wzy); SPTR: O-antigen polymerase (Wzy) YP_004655292.1 PFAM: O-Antigen ligase; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: tmt:Tmath_0930 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1 YP_004655293.1 PFAM: Glycosyl transferases group 1; InterPro IPR013216; KEGG: chu:CHU_1562 SAM-dependent methyltransferase; PFAM: Methyltransferase type 11; SPTR: SAM-dependent methyltransferase YP_004655294.1 PFAM: Methyltransferase domain; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: naz:Aazo_4909 group 1 glycosyl transferase; PFAM: Glycosyl transferase, group 1; SPTR: Group 1 glycosyl transferase YP_004655295.1 PFAM: Glycosyl transferases group 1; COGs: COG3458 Acetyl esterase (deacetylase); InterPro IPR008391; KEGG: dfe:Dfer_1236 acetyl xylan esterase; PFAM: Acetyl xylan esterase; PRIAM: Cephalosporin-C deacetylase; SPTR: Acetyl xylan esterase YP_004655296.1 PFAM: Acetyl xylan esterase (AXE1); COGs: COG1983 stress-responsive transcriptional regulator protein; InterPro IPR007168; KEGG: dfe:Dfer_3554 phage shock protein C, PspC; PFAM: PspC; SPTR: Phage shock protein C, PspC YP_004655297.1 PFAM: PspC domain; COGs: COG1735 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR001559; KEGG: dfe:Dfer_5616 aryldialkylphosphatase; PFAM: Aryldialkylphosphatase; SPTR: Aryldialkylphosphatase YP_004655298.1 PFAM: Phosphotriesterase; InterPro IPR005202; KEGG: sur:STAUR_0635 GRAs-like transcription factor; PFAM: GRAS transcription factor; SPTR: GAI protein YP_004655299.1 PFAM: GRAS family transcription factor; COGs: COG4634 conserved hypothetical protein; KEGG: tra:Trad_0710 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004655300.1 COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: fjo:Fjoh_4961 hypothetical protein; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein YP_004655301.1 PFAM: Protein of unknown function (DUF433); COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176:IPR006108:IPR001753; KEGG: dfe:Dfer_3526 3-hydroxyacyl-CoA dehydrogenase NAD-binding; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; SPTR: 3-hydroxyacyl-CoA dehydrogenase NAD-binding YP_004655302.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YP_004655303.1 COGs: COG0216 Protein chain release factor A; HAMAP: Peptide chain release factor 1; InterPro IPR004373:IPR005139:IPR000352; KEGG: sli:Slin_4995 peptide chain release factor 1; PFAM: Class I peptide chain release factor; Peptide chain release factor; SPTR: Peptide chain release factor 1; TIGRFAM: Peptide chain release factor 1 YP_004655304.1 PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1; COGs: COG3592 conserved hypothetical protein; InterPro IPR010693:IPR018967:IPR006622; KEGG: sli:Slin_1437 hypothetical protein; PFAM: Ferredoxin soy-like; Iron sulphur domain-containing, CDGSH-type; SPTR: uncharacterized protein YP_004655305.1 PFAM: Iron-binding zinc finger CDGSH type; Protein of unknown function (DUF1271); COGs: COG4299 conserved hypothetical protein; InterPro IPR019259; KEGG: sli:Slin_6602 heparan-alpha-glucosaminide N-acetyltransferase; PFAM: Protein of unknown function DUF2261, transmembrane; SPTR: Heparan-alpha-glucosaminide N-acetyltransferase YP_004655306.1 InterPro IPR014883; KEGG: sli:Slin_3132 VRR-NUC domain protein; PFAM: VRR-NUC; SPTR: VRR-NUC domain protein YP_004655307.1 PFAM: VRR-NUC domain; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_5600 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein YP_004655308.1 PFAM: WD40-like Beta Propeller Repeat; OmpA family; KEGG: dfe:Dfer_2958 hypothetical protein; SPTR: uncharacterized protein YP_004655309.1 COGs: COG0572 Uridine kinase; KEGG: lby:Lbys_3327 hypothetical protein; SPTR: uncharacterized protein YP_004655310.1 PFAM: Phosphoribulokinase / Uridine kinase; COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: sli:Slin_1076 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase domain protein YP_004655311.1 PFAM: Acyl-CoA dehydrogenase N terminal; Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR000674:IPR008274:IPR006311; KEGG: dfe:Dfer_0019 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding YP_004655312.1 PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; InterPro IPR001041:IPR002888; KEGG: sli:Slin_5426 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; Ferredoxin; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: (2Fe-2S)-binding domain protein YP_004655313.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain; COGs: COG2360 Leu/Phe-tRNA-protein transferase; HAMAP: Leucyl/phenylalanyl-tRNA-protein transferase; InterPro IPR004616; KEGG: sli:Slin_0427 leucyl/phenylalanyl-tRNA/protein transferase; PFAM: Leucyl/phenylalanyl-tRNA-protein transferase; PRIAM: Leucyltransferase; SPTR: Leucyl/phenylalanyl-tRNA--protein transferase; TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase YP_004655314.1 PFAM: Leucyl/phenylalanyl-tRNA protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA--protein transferase; COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: sli:Slin_5748 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family YP_004655315.1 PFAM: GDSL-like Lipase/Acylhydrolase; COGs: COG0017 Aspartyl/asparaginyl-tRNA synthetase; HAMAP: Asparaginyl-tRNA synthetase; InterPro IPR004365:IPR004364:IPR004522; KEGG: dfe:Dfer_4215 asparaginyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: Asparagine--tRNA ligase; SPTR: Asparaginyl-tRNA synthetase; TIGRFAM: Asparaginyl-tRNA synthetase, class IIb YP_004655316.1 PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: asparaginyl-tRNA synthetase; KEGG: lby:Lbys_2582 hypothetical protein; SPTR: uncharacterized protein YP_004655317.1 PFAM: Protein of unknown function (DUF3467); COGs: COG3781 membrane protein; InterPro IPR007913; KEGG: cpi:Cpin_2003 hypothetical protein; SPTR: uncharacterized protein YP_004655318.1 PFAM: Bestrophin; COGs: COG0540 Aspartate carbamoyltransferase catalytic chain; HAMAP: Aspartate carbamoyltransferase; InterPro IPR006132:IPR006131:IPR002082; KEGG: dfe:Dfer_2657 aspartate carbamoyltransferase catalytic subunit; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; PRIAM: Aspartate carbamoyltransferase; SPTR: Aspartate carbamoyltransferase; TIGRFAM: Aspartate carbamoyltransferase, eukaryotic YP_004655319.1 PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase; InterPro IPR006710:IPR000421; KEGG: cpi:Cpin_1751 coagulation factor 5/8 type domain protein; PFAM: Coagulation factor 5/8 type, C-terminal; Glycoside hydrolase, family 43; SPTR: Coagulation factor 5/8 type domain protein YP_004655320.1 PFAM: F5/8 type C domain; Glycosyl hydrolases family 43; COGs: COG2352 Phosphoenolpyruvate carboxylase; InterPro IPR001449; KEGG: dfe:Dfer_3929 phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase; PRIAM: Phosphoenolpyruvate carboxylase; SPTR: Phosphoenolpyruvate carboxylase YP_004655321.1 PFAM: Phosphoenolpyruvate carboxylase; KEGG: sli:Slin_5160 hypothetical protein; SPTR: uncharacterized protein YP_004655323.1 COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; HAMAP: Phospho-N-acetylmuramoyl-pentapeptide transferase; InterPro IPR003524:IPR018480:IPR018481; KEGG: dfe:Dfer_3519 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; SPTR:Phospho-N-acetylmuramoyl-pentapeptide-transfer ase; TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase YP_004655324.1 PFAM: Glycosyl transferase 4; Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; InterPro IPR013078; KEGG: sli:Slin_4770 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase YP_004655325.1 PFAM: Phosphoglycerate mutase; KEGG: dfe:Dfer_3805 tetratricopeptide domain protein; SPTR: Tetratricopeptide domain protein YP_004655326.1 KEGG: dfe:Dfer_3804 hypothetical protein; SPTR: uncharacterized protein YP_004655327.1 COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; HAMAP: Glucose-inhibited division protein A; InterPro IPR004416:IPR002218; KEGG: dfe:Dfer_3802 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: Glucose-inhibited division protein A-related; SPTR: tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; TIGRFAM: Glucose-inhibited division protein A YP_004655328.1 PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A; COGs: COG0319 metal-dependent hydrolase; HAMAP: Uncharacterised protein family UPF0054; InterPro IPR002036; KEGG: dfe:Dfer_3801 protein of unknown function UPF0054; PFAM: Uncharacterised protein family UPF0054; SPTR: Probable rRNA maturation factor; TIGRFAM: Uncharacterised protein family UPF0054 YP_004655329.1 PFAM: Uncharacterized protein family UPF0054; TIGRFAM: metalloprotein, YbeY/UPF0054 family; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: sli:Slin_4391 radical SAM protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein YP_004655330.1 PFAM: Radical SAM superfamily; COGs: COG0777 Acetyl-CoA carboxylase beta subunit; HAMAP: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; InterPro IPR000022:IPR000438; KEGG: sli:Slin_4392 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: Carboxyl transferase; PRIAM: Acetyl-CoA carboxylase; SPTR: Acetyl-CoA carboxylase, carboxyl transferase, beta subunit; TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase, beta subunit YP_004655331.1 PFAM: Carboxyl transferase domain; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; COGs: COG4912 DNA alkylation repair protein; InterPro IPR014825; KEGG: pdi:BDI_2958 hypothetical protein; PFAM: DNA alkylation repair enzyme; SPTR: uncharacterized protein YP_004655332.1 PFAM: DNA alkylation repair enzyme; COGs: COG0206 Cell division GTPase; InterPro IPR003008:IPR018316:IPR000158; KEGG: sli:Slin_4756 cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; SPTR: Cell division protein ftsZ; TIGRFAM: Cell division protein FtsZ, N-terminal YP_004655333.1 PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ; COGs: COG0849 Actin-like ATPase involved in cell division; InterPro IPR003494:IPR020823; KEGG: sli:Slin_4755 cell division protein FtsA; PFAM: Cell division protein FtsA domain; SPTR: Cell division protein FtsA; TIGRFAM: Cell division protein family FtsA YP_004655334.1 PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA; KEGG: sli:Slin_4754 hypothetical protein; SPTR: uncharacterized protein YP_004655335.1 COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; InterPro IPR005758:IPR000713:IPR013221:IPR004101; KEGG: sli:Slin_4753 UDP-N-acetylmuramate/alanine ligase; PFAM: Mur ligase, C-terminal; Mur ligase, central; Mur ligase, N-terminal; PRIAM: UDP-N-acetylmuramate--L-alanine ligase; SPTR: UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate-alanine ligase YP_004655336.1 PFAM: Mur ligase, glutamate ligase domain; Mur ligase, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate--alanine ligase; COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; HAMAP:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; InterPro IPR004276:IPR007235:IPR006009; KEGG: dfe:Dfer_3488 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyl transferase, family 28, C-terminal; Glycosyl transferase, family 28; SPTR:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: N-acetylglucosaminyltransferase, MurG YP_004655337.1 PFAM: Glycosyltransferase 28 C-terminal domain; Glycosyltransferase 28 N-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: sli:Slin_4751 cell cycle protein; PFAM: Cell cycle protein; SPTR: Cell cycle protein YP_004655338.1 PFAM: Cell cycle protein; COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; InterPro IPR005762:IPR013221:IPR004101; KEGG: sli:Slin_4750 UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase, central; Mur ligase, C-terminal; PRIAM: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; SPTR: UDP-N-acetylmuramoylalanine--D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase YP_004655339.1 PFAM: Mur ligase, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; KEGG: dfe:Dfer_3699 hypothetical protein; SPTR: uncharacterized protein YP_004655340.1 PFAM: Planctomycete cytochrome C; KEGG: sli:Slin_4556 hypothetical protein; SPTR: uncharacterized protein YP_004655341.1 PFAM: Alpha-L-fucosidase; COGs: COG0509 Glycine cleavage system H protein (lipoate-binding); HAMAP: Glycine cleavage H-protein; InterPro IPR002930:IPR017453; KEGG: mtt:Ftrac_3338 glycine cleavage system H protein; PFAM: Glycine cleavage H-protein; SPTR: Glycine cleavage system H protein; TIGRFAM: Glycine cleavage H-protein, subgroup YP_004655342.1 PFAM: Glycine cleavage H-protein; TIGRFAM: glycine cleavage system H protein; COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR006680:IPR004722; KEGG: dfe:Dfer_4467 dihydroorotase, multifunctional complex type; PFAM: Amidohydrolase 1; SPTR: Dihydroorotase, multifunctional complex type; TIGRFAM: Dihydroorotase multifunctional complex type YP_004655343.1 TIGRFAM: dihydroorotase, multifunctional complex type; KEGG: dfe:Dfer_4468 hypothetical protein; SPTR: uncharacterized protein YP_004655344.1 InterPro IPR001623; KEGG: sli:Slin_4457 hypothetical protein; PFAM: Heat shock protein DnaJ, N-terminal; SPTR: uncharacterized protein YP_004655345.1 PFAM: DnaJ domain YP_004655347.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_0982 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD YP_004655348.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036:IPR004764; KEGG: dfe:Dfer_0981 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: Acriflavin resistance protein; SPTR: Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1 YP_004655349.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; COGs: COG1538 Outer membrane protein; InterPro IPR003423:IPR010131; KEGG: dfe:Dfer_0980 RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; SPTR: RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT YP_004655350.1 PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; KEGG: sli:Slin_1064 hypothetical protein; SPTR: uncharacterized protein YP_004655351.1 manually curated YP_004655352.1 PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2; KEGG: sli:Slin_4506 hypothetical protein; SPTR: uncharacterized protein YP_004655353.1 PFAM: SusD family; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: sli:Slin_4505 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004655354.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR014036; KEGG: psn:Pedsa_1847 transcriptional regulator, DeoR family; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal; SPTR: Transcriptional regulator, DeoR family YP_004655355.1 PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain; KEGG: dfe:Dfer_3742 hypothetical protein; SPTR: uncharacterized protein YP_004655356.1 COGs: COG0634 Hypoxanthine-guanine phosphoribosyltransferase; InterPro IPR000836:IPR005904; KEGG: dfe:Dfer_3743 hypoxanthine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; PRIAM: Hypoxanthine phosphoribosyltransferase; SPTR: Hypoxanthine phosphoribosyltransferase; TIGRFAM: Hypoxanthine phosphoribosyl transferase YP_004655357.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase; KEGG: dfe:Dfer_4235 hypothetical protein; SPTR: uncharacterized protein YP_004655358.1 COGs: COG0308 Aminopeptidase N; KEGG: sli:Slin_5083 aminopeptidase; SPTR: aminopeptidase YP_004655359.1 InterPro IPR000866; KEGG: sli:Slin_4277 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_004655360.1 PFAM: AhpC/TSA family; KEGG: dfe:Dfer_2635 hypothetical protein; SPTR: uncharacterized protein YP_004655361.1 KEGG: sli:Slin_0108 hypothetical protein; SPTR: uncharacterized protein YP_004655362.1 COGs: COG4826 Serine protease inhibitor; InterPro IPR000215; KEGG: sli:Slin_5492 proteinase inhibitor I4 serpin; PFAM: Protease inhibitor I4, serpin; SMART: Protease inhibitor I4, serpin; SPTR: Proteinase inhibitor I4 serpin YP_004655363.1 PFAM: Serpin (serine protease inhibitor); COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: dfe:Dfer_3459 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004655364.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: dfe:Dfer_3458 hypothetical protein; SPTR: uncharacterized protein YP_004655365.1 KEGG: dfe:Dfer_3457 hypothetical protein; SPTR: uncharacterized protein YP_004655367.1 PFAM: Elongation factor Tu C-terminal domain; Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU; COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011622:IPR011712:IPR003594; KEGG: sli:Slin_6490 ATP-binding region ATPase domain protein; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; Diverse 7TM receptor, extracellular region 2; SPTR: ATP-binding region ATPase domain protein YP_004655368.1 PFAM: Histidine kinase; 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; 7TMR-DISM extracellular 2; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: sli:Slin_4881 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004655369.1 PFAM: Major Facilitator Superfamily; TIGRFAM: Multidrug resistance protein YP_004655370.1 PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial; COGs: COG0250 Transcription antiterminator; InterPro IPR006645:IPR005824:IPR001062; KEGG: dfe:Dfer_3454 NusG antitermination factor; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; SMART: Transcription antitermination protein, NusG, N-terminal; KOW; SPTR: Transcription antitermination protein nusG; TIGRFAM: Transcription antitermination protein, NusG YP_004655371.1 PFAM: Transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG; COGs: COG0080 Ribosomal protein L11; InterPro IPR020784:IPR020783:IPR000911:IPR006519; KEGG: dfe:Dfer_3453 50S ribosomal protein L11; PFAM: Ribosomal protein L11, C-terminal; Ribosomal protein L11, N-terminal; SMART: Ribosomal protein L11; SPTR: 50S ribosomal protein L11; TIGRFAM: Ribosomal protein L11, bacterial-type YP_004655372.1 PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11; COGs: COG0081 Ribosomal protein L1; InterPro IPR002143:IPR005878; KEGG: dfe:Dfer_3452 50S ribosomal protein L1; PFAM: Ribosomal protein L1; SPTR: 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type YP_004655373.1 PFAM: Ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast; COGs: COG0244 Ribosomal protein L10; HAMAP: 50S ribosomal protein L10; InterPro IPR001790; KEGG: sli:Slin_4479 ribosomal protein L10; PFAM: Ribosomal protein L10; SPTR: 50S ribosomal protein L10; manually curated YP_004655374.1 PFAM: Ribosomal protein L10; COGs: COG0222 Ribosomal protein L7/L12; HAMAP: Ribosomal protein L7/L12; InterPro IPR000206:IPR013823; KEGG: sli:Slin_4478 ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal; SPTR: 50S ribosomal protein L7/L12; TIGRFAM: Ribosomal protein L7/L12 YP_004655375.1 PFAM: Ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12; COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; HAMAP: DNA-directed RNA polymerase subunit beta; InterProIPR007644:IPR007642:IPR007645:IPR019462:IPR 007120:IPR007641:IPR010243; KEGG: dfe:Dfer_3449 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 2; RNA polymerase, beta subunit, protrusion; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 7; SPTR: DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type YP_004655376.1 PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit; COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; HAMAP: DNA-directed RNA polymerase subunit beta'; InterProIPR007080:IPR000722:IPR007066:IPR007083:IPR 007081:IPR006592:IPR012754; KEGG: dfe:Dfer_3448 DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5; SMART: RNA polymerase, N-terminal; SPTR: DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime YP_004655377.1 PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 3; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form; COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015883; KEGG: sli:Slin_2031 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Beta-N-acetylhexosaminidase YP_004655378.1 PFAM: F5/8 type C domain; Glycosyl hydrolase 20, catalytic domain; Glycosyl hydrolase 20, domain 2; KEGG: fbc:FB2170_13081 cAMP-binding protein; SPTR: cAMP-binding protein-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; manually curated YP_004655380.1 InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3569 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; manually curated YP_004655381.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; KEGG: dfe:Dfer_3570 hypothetical protein; SPTR: uncharacterized protein YP_004655382.1 COGs: COG1119 ABC-type molybdenum transport system ATPase component/photorepair protein PhrA; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_2971 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related YP_004655383.1 PFAM: ABC transporter; COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: sli:Slin_1392 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; PRIAM: (R)-benzylsuccinyl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase domain protein YP_004655384.1 PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; COGs: COG2968 conserved hypothetical protein; InterPro IPR007497; KEGG: dfe:Dfer_3934 protein of unknown function DUF541; PFAM: Protein of unknown function DUF541; SPTR: uncharacterized protein YP_004655385.1 PFAM: Protein of unknown function (DUF541); COGs: COG1649 conserved hypothetical protein; InterPro IPR003790:IPR003961; KEGG: psn:Pedsa_3319 protein of unknown function DUF187; PFAM: Protein of unknown function DUF187; Fibronectin, type III; SMART: Fibronectin, type III; SPTR: uncharacterized protein YP_004655386.1 PFAM: Uncharacterised BCR, COG1649; Fibronectin type III domain; SPTR: Predicted protein YP_004655387.1 PFAM: Response regulator receiver domain YP_004655388.1 InterPro IPR000477; KEGG: cyt:cce_1086 RNA-directed DNA polymerase; PFAM: RNA-directed DNA polymerase (reverse transcriptase); PRIAM: RNA-directed DNA polymerase; SPTR: Probable RNA-directed DNA polymerase YP_004655389.1 PFAM: Reverse transcriptase (RNA-dependent DNA polymerase) YP_004655390.1 COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; KEGG: rbi:RB2501_07070 helicase; SPTR: Helicase YP_004655391.1 PFAM: PIF1 helicase; COGs: COG2378 transcriptional regulator protein; InterPro IPR013196; KEGG: cly:Celly_1289 transcriptional regulator-like protein; SPTR: uncharacterized protein YP_004655392.1 PFAM: HTH domain; KEGG: bth:BT_1796 hypothetical protein; SPTR: uncharacterized protein YP_004655393.1 COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: dfe:Dfer_4619 protein of unknown function DUF433; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein YP_004655394.1 PFAM: Protein of unknown function (DUF433); COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: dfe:Dfer_3947 aminopeptidase precursor; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; SPTR: Aminopeptidase YP_004655395.1 PFAM: Peptidase M1; COGs: COG0523 GTPase (G3E family); InterPro IPR003495:IPR011629; KEGG: rba:RB13094 cobalamin synthesis protein CobW; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SPTR: uncharacterized protein YP_004655396.1 PFAM: Cobalamin synthesis protein cobW C-terminal domain; CobW/HypB/UreG, nucleotide-binding domain; SPTR: Membrane protein YP_004655397.1 InterPro IPR013517; KEGG: sli:Slin_4333 FG-GAP repeat protein; PFAM: FG-GAP; SPTR: FG-GAP repeat protein YP_004655398.1 PFAM: FG-GAP repeat; COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: ppr:PBPRB1472 hypothetical protein; PFAM: Patatin; SPTR: uncharacterized protein PG1879 YP_004655399.1 PFAM: Patatin-like phospholipase; COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834:IPR011951:IPR006439; KEGG: dfe:Dfer_3624 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB; HAD-superfamily hydrolase, subfamily IA, variant 1 YP_004655400.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; HAD superfamily (subfamily IA) hydrolase, TIGR02254; COGs: COG3217 Uncharacterized Fe-S protein; InterPro IPR005303:IPR005302; KEGG: dfe:Dfer_3013 MOSC domain containing protein; PFAM: Molybdenum cofactor sulfurase, C-terminal; MOSC, N-terminal beta barrel; SPTR: MOSC domain containing protein YP_004655401.1 PFAM: MOSC N-terminal beta barrel domain; MOSC domain; COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR002937:IPR014105; KEGG: mtt:Ftrac_1976 phytoene desaturase; PFAM: Amine oxidase; SPTR: phytoene dehydrogenase; TIGRFAM: Zeta-phytoene desaturase YP_004655402.1 PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase; InterPro IPR019861; KEGG: phe:Phep_1531 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes YP_004655403.1 PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein; COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154:IPR013149; KEGG: dfe:Dfer_3686 alcohol dehydrogenase zinc-binding domain protein; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SPTR: Alcohol dehydrogenase zinc-binding domain protein YP_004655404.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; COGs: COG0820 Fe-S-cluster redox enzyme; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; InterPro IPR004383:IPR007197; KEGG: dfe:Dfer_4731 radical SAM enzyme, Cfr family; PFAM: Radical SAM; SPTR: Ribosomal RNA large subunit methyltransferase N; TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN YP_004655405.1 PFAM: Radical SAM superfamily; TIGRFAM: 23S rRNA m2A2503 methyltransferase YP_004655406.1 InterPro IPR000462; KEGG: mtt:Ftrac_0505 cdp-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-alcohol phosphatidyltransferase YP_004655407.1 PFAM: CDP-alcohol phosphatidyltransferase; SPTR: integron gene cassette protein YP_004655408.1 COGs: COG0338 Site-specific DNA methylase; InterPro IPR012327; KEGG: chl:Chy400_0781 D12 class N6 adenine-specific DNA methyltransferase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; SPTR: D12 class N6 adenine-specific DNA methyltransferase YP_004655409.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: eel:EUBELI_01764 hypothetical protein; SPTR: uncharacterized protein YP_004655410.1 PFAM: Domain of unknown function DUF87; KEGG: eel:EUBELI_01763 hypothetical protein; SPTR: uncharacterized protein YP_004655411.1 KEGG: dfe:Dfer_1363 hypothetical protein; SPTR: uncharacterized protein YP_004655412.1 KEGG: dfe:Dfer_1364 hypothetical protein; SPTR: uncharacterized protein YP_004655413.1 PFAM: Protein of unknown function (DUF3037); COGs: COG3537 alpha-1 2-mannosidase; InterPro IPR012939:IPR005887; KEGG: dfe:Dfer_4808 alpha-1,2-mannosidase; PFAM: Glycosyl hydrolase 92; SPTR: Alpha-1,2-mannosidase; TIGRFAM: Alpha-1,2-mannosidase YP_004655414.1 PFAM: Glycosyl hydrolase 92; TIGRFAM: alpha-1,2-mannosidase, KEGG: sli:Slin_1398 hypothetical protein; SPTR: uncharacterized protein YP_004655415.1 COGs: COG1430 conserved hypothetical protein; InterPro IPR003795; KEGG: dfe:Dfer_3905 protein of unknown function DUF192; PFAM: Protein of unknown function DUF192; SPTR: uncharacterized protein YP_004655416.1 PFAM: Uncharacterized ACR, COG1430; COGs: COG0215 Cysteinyl-tRNA synthetase; InterPro IPR015803:IPR015273:IPR002308; KEGG: lby:Lbys_2875 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia, N-terminal; Cysteinyl-tRNA synthetase, class Ia, DALR; PRIAM: Cysteine--tRNA ligase; SPTR: Cysteinyl-tRNA synthetase; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia YP_004655417.1 PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase; COGs: COG0572 Uridine kinase; InterPro IPR006083; KEGG: sli:Slin_5127 phosphoribulokinase/uridine kinase; PFAM: Phosphoribulokinase/uridine kinase; PRIAM: Uridine kinase; SPTR: Uridine kinase YP_004655418.1 PFAM: Phosphoribulokinase / Uridine kinase; TIGRFAM: uridine kinase; KEGG: sli:Slin_6388 hypothetical protein; SPTR: uncharacterized protein YP_004655419.1 PFAM: PspC domain; COGs: COG1278 Cold shock protein; InterPro IPR011129:IPR002059; KEGG: dfe:Dfer_4008 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding domain protein YP_004655420.1 PFAM: 'Cold-shock' DNA-binding domain; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: sli:Slin_5816 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein YP_004655421.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; KEGG: dfe:Dfer_4047 hypothetical protein; SPTR: uncharacterized protein YP_004655422.1 KEGG: dfe:Dfer_4046 hypothetical protein; SPTR: uncharacterized protein YP_004655423.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR003593:IPR011703; KEGG: sli:Slin_4963 ATPase AAA; PFAM: ATPase associated with various cellular activities, AAA-3; SMART: ATPase, AAA+ type, core; SPTR: ATPase associated with various cellular activities AAA_3 YP_004655424.1 PFAM: ATPase associated with various cellular activities (AAA); KEGG: sli:Slin_4962 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004655425.1 KEGG: sli:Slin_4961 hypothetical protein; SPTR: uncharacterized protein YP_004655426.1 InterPro IPR003088; KEGG: sli:Slin_3134 cytochrome c, class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c, class I YP_004655427.1 COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: sli:Slin_1058 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004655428.1 PFAM: Major Facilitator Superfamily; COGs: COG2137 conserved hypothetical protein; HAMAP: Regulatory protein recX; InterPro IPR003783; KEGG: sli:Slin_5048 regulatory protein RecX; PFAM: Regulatory protein RecX; SPTR: Regulatory protein recX YP_004655429.1 PFAM: RecX family; KEGG: mba:Mbar_A2047 hypothetical protein; SPTR: uncharacterized protein YP_004655430.1 COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: sli:Slin_4513 hypothetical protein; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein YP_004655431.1 PFAM: Protein of unknown function (DUF433); COGs: COG4634 conserved hypothetical protein; KEGG: sli:Slin_4512 hypothetical protein; SPTR: uncharacterized protein YP_004655432.1 PFAM: Protein of unknown function DUF82; COGs: COG0165 Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; InterPro IPR009049:IPR000362; KEGG: sli:Slin_0375 argininosuccinate lyase; PFAM: Fumarate lyase; PRIAM: Argininosuccinate lyase; SPTR: Argininosuccinate lyase; TIGRFAM: Argininosuccinate lyase YP_004655433.1 PFAM: Lyase; TIGRFAM: argininosuccinate lyase; KEGG: fjo:Fjoh_0943 hypothetical protein; SPTR: uncharacterized protein YP_004655434.1 KEGG: dfe:Dfer_4021 hypothetical protein; SPTR: uncharacterized protein YP_004655437.1 COGs: COG0308 Aminopeptidase N; KEGG: sli:Slin_5083 aminopeptidase; SPTR: aminopeptidase YP_004655438.1 PFAM: Peptidase M1; COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; InterPro IPR004680; KEGG: gpb:HDN1F_23920 hypothetical protein; PFAM: Divalent ion symporter; SPTR: uncharacterized protein YP_004655439.1 PFAM: Citrate transporter; KEGG: dfe:Dfer_4871 hypothetical protein; SPTR: uncharacterized protein YP_004655440.1 COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005835:IPR005907; KEGG: sli:Slin_5841 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Glucose-1-phosphate thymidylyltransferase; SPTR: Glucose-1-phosphate thymidylyltransferase; TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form YP_004655441.1 PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form; COGs: COG0307 Riboflavin synthase alpha chain; InterPro IPR001783; KEGG: dfe:Dfer_2926 riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; PRIAM: Riboflavin synthase; SPTR: Riboflavin synthase, alpha subunit; TIGRFAM: Lumazine-binding protein YP_004655442.1 PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit; KEGG: fjo:Fjoh_1375 hypothetical protein; SPTR: uncharacterized protein YP_004655443.1 COGs: COG0366 Glycosidase; InterPro IPR006589:IPR006047; KEGG: sli:Slin_0347 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; SPTR: Alpha amylase catalytic region YP_004655444.1 PFAM: Alpha amylase, catalytic domain; COGs: COG0621 2-methylthioadenine synthetase; HAMAP: Ribosomal protein S12 methylthiotransferase RimO; InterProIPR005840:IPR006638:IPR013848:IPR007197:IPR 005839; KEGG: dfe:Dfer_3605 MiaB-like tRNA modifying enzyme YliG; PFAM: Methylthiotransferase, N-terminal; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: MiaB-like tRNA modifying enzyme YliG; TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO; Methylthiotransferase YP_004655445.1 PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: ribosomal protein S12 methylthiotransferase RimO; radical SAM methylthiotransferase, MiaB/RimO family; KEGG: dfe:Dfer_4485 oxidoreductase; SPTR: oxidoreductase YP_004655446.1 COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; InterPro IPR006148; KEGG: dfe:Dfer_4486 glucosamine/galactosamine-6-phosphate isomerase; PFAM: Glucosamine/galactosamine-6-phosphate isomerase; PRIAM: Glucosamine-6-phosphate deaminase; SPTR: Glucosamine/galactosamine-6-phosphate isomerase YP_004655447.1 PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; COGs: COG1820 N-acetylglucosamine-6-phosphate deacetylase; InterPro IPR006680:IPR003764; KEGG: dfe:Dfer_4487 N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase 1; PRIAM: N-acetylglucosamine-6-phosphate deacetylase; SPTR: N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase YP_004655448.1 PFAM: Amidohydrolase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; COGs: COG0738 Fucose permease; InterPro IPR011701:IPR005964; KEGG: dfe:Dfer_4488 glucose/galactose transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Glucose/galactose transporter; TIGRFAM: Bacterial glucose/galactose transporter YP_004655449.1 PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: dfe:Dfer_4489 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004655450.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; KEGG: sli:Slin_0601 hypothetical protein; SPTR: uncharacterized protein YP_004655451.1 KEGG: sli:Slin_0601 hypothetical protein; SPTR: uncharacterized protein YP_004655452.1 KEGG: sli:Slin_0602 hypothetical protein; SPTR: uncharacterized protein YP_004655453.1 PFAM: Neutral/alkaline non-lysosomal ceramidase; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653:IPR006311; KEGG: sli:Slin_0603 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase YP_004655454.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: sli:Slin_0604 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004655455.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_0608 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004655456.1 PFAM: short chain dehydrogenase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: sli:Slin_0605 alpha-N-acetylgalactosaminidase; PFAM: Oxidoreductase, N-terminal; PRIAM: Alpha-N-acetylgalactosaminidase; SPTR: Alpha-N-acetylgalactosaminidase YP_004655457.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG4760 membrane protein; InterPro IPR010539; KEGG: gym:GYMC10_6220 protein of unknown function DUF1112; PFAM: Protein of unknown function DUF1112; SPTR: uncharacterized protein YP_004655458.1 InterPro IPR012910:IPR000531; KEGG: sli:Slin_6039 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004655459.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: sli:Slin_6040 hypothetical protein; SPTR: uncharacterized protein YP_004655460.1 COGs: COG2355 Zn-dependent dipeptidase microsomal dipeptidase homolog; InterPro IPR008257; KEGG: sli:Slin_6456 membrane dipeptidase; PFAM: Peptidase M19, renal dipeptidase; PRIAM: Membrane dipeptidase; SPTR: Membrane dipeptidase YP_004655461.1 PFAM: Membrane dipeptidase (Peptidase M19); KEGG: dfe:Dfer_4404 hypothetical protein; SPTR: uncharacterized protein YP_004655462.1 KEGG: dfe:Dfer_4403 hypothetical protein; SPTR: uncharacterized protein YP_004655463.1 InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_4401 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor YP_004655464.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; KEGG: dfe:Dfer_4400 hypothetical protein; SPTR: uncharacterized protein YP_004655465.1 COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR011659:IPR006680; KEGG: gfo:GFO_0308 WD-40-like repeat-containing amidohydrolase; PFAM: Amidohydrolase 1; WD40-like Beta Propeller; SPTR: WD40-like repeat/amidohydrolase domain protein YP_004655466.1 PFAM: WD40-like Beta Propeller Repeat; Amidohydrolase; COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: mtt:Ftrac_0734 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family YP_004655467.1 PFAM: Bacterial regulatory proteins, lacI family; family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_0106 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004655468.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: shg:Sph21_2836 RagB/SusD domain-containing protein; PFAM: RagB/SusD; SPTR: outer membrane protein YP_004655469.1 PFAM: SusD family; KEGG: gau:GAU_0690 hypothetical protein; SPTR: uncharacterized protein YP_004655470.1 InterPro IPR011459; KEGG: cyn:Cyan7425_0816 hypothetical protein; PFAM: Protein of unknown function DUF1565; SPTR: uncharacterized protein YP_004655471.1 PFAM: Protein of unknown function (DUF1565); Calx-beta domain; KEGG: mts:MTES_1113 ERCC4-like helicase; SPTR: Predicted protein YP_004655472.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: phe:Phep_2599 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004655473.1 PFAM: short chain dehydrogenase; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: phe:Phep_2598 major facilitator superfamily protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004655474.1 PFAM: Major Facilitator Superfamily; Prodigal; This gene is disrupted by insertion of repetitive element; manually curated YP_004655475.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; Prodigal; manually curated YP_004655476.1 PFAM: Metallo-beta-lactamase superfamily; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341:IPR013342; KEGG: phe:Phep_2597 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal; PRIAM: Galactonate dehydratase; SPTR: Mandelate racemase/muconate lactonizing protein YP_004655477.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: chu:CHU_0673 lipoprotein transmembrane protein; PFAM: Bile acid:sodium symporter; SPTR: Possible lipoprotein transmembrane protein YP_004655478.1 COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873; KEGG: hch:HCH_04499 long-chain acyl-CoA synthetase-like protein; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: AMP-dependent synthetase and ligase YP_004655479.1 PFAM: AMP-binding enzyme; Prodigal; manually curated YP_004655480.1 PFAM: Glutamine synthetase, catalytic domain YP_004655481.1 COGs: COG0605 Superoxide dismutase; InterPro IPR019831:IPR019832; KEGG: cpi:Cpin_1061 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; SPTR: Superoxide dismutase YP_004655482.1 PFAM: Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, C-terminal domain; COGs: COG0597 Lipoprotein signal peptidase; HAMAP: Peptidase A8, signal peptidase II; InterPro IPR001872; KEGG: dfe:Dfer_4392 lipoprotein signal peptidase; PRIAM: Signal peptidase II; SPTR: Lipoprotein signal peptidase 2; TIGRFAM: Peptidase A8, signal peptidase II YP_004655483.1 PFAM: Signal peptidase (SPase) II; InterPro IPR002872; KEGG: dfe:Dfer_4393 proline dehydrogenase; PFAM: Proline dehydrogenase; SPTR: Proline dehydrogenase YP_004655484.1 PFAM: Proline dehydrogenase; COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006218:IPR020822; KEGG: dfe:Dfer_4394 DAHP synthetase I/KdsA; PFAM: DAHP synthetase I/KDSA; Chorismate mutase, type II; PRIAM: 3-deoxy-7-phosphoheptulonate synthase; SPTR: DAHP synthetase I/KDSA YP_004655485.1 PFAM: Chorismate mutase type II; DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001867; KEGG: sli:Slin_2355 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, C-terminal; SPTR: two component transcriptional regulator, winged helix family YP_004655486.1 PFAM: Transcriptional regulatory protein, C terminal; InterPro IPR007372; KEGG: cat:CA2559_06410 YCE I like family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YCE I like family protein; manually curated YP_004655487.1 PFAM: YceI-like domain; Prodigal YP_004655488.1 InterPro IPR003838; KEGG: sli:Slin_0943 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004655489.1 PFAM: Predicted permease; InterPro IPR002350:IPR011497; KEGG: scl:sce6861 hypothetical protein; PFAM: Protease inhibitor, Kazal-type; SMART: Proteinase inhibitor I1, Kazal; SPTR: uncharacterized protein YP_004655490.1 PFAM: Kazal-type serine protease inhibitor domain; KEGG: dfe:Dfer_4869 hypothetical protein; SPTR: uncharacterized protein YP_004655491.1 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: sli:Slin_3314 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004655492.1 PFAM: Predicted permease; KEGG: sli:Slin_4640 hypothetical protein; SPTR: uncharacterized protein YP_004655493.1 KEGG: sli:Slin_4640 hypothetical protein; SPTR: uncharacterized protein YP_004655494.1 InterPro IPR003838; KEGG: sli:Slin_4639 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004655495.1 PFAM: Predicted permease; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011658:IPR006665; KEGG: sli:Slin_4643 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; PA14; SMART: PA14; SPTR: OmpA/MotB domain protein YP_004655496.1 PFAM: OmpA family; PA14 domain; manually curated YP_004655497.1 PFAM: Predicted permease; TIGRFAM: Acidobacterial duplicated orphan permease; InterPro IPR003838; KEGG: sli:Slin_4627 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004655498.1 PFAM: Predicted permease; InterPro IPR003838; KEGG: sli:Slin_4615 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004655499.1 PFAM: Predicted permease; TIGRFAM: Acidobacterial duplicated orphan permease; InterPro IPR003838; KEGG: sli:Slin_4630 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004655500.1 PFAM: Predicted permease; InterPro IPR003838; KEGG: dfe:Dfer_4857 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004655501.1 PFAM: Predicted permease; TIGRFAM: Acidobacterial duplicated orphan permease; InterPro IPR003838; KEGG: zpr:ZPR_4640 ABC transporter permease; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: ABC transporter permease YP_004655502.1 PFAM: Predicted permease; InterPro IPR003838; KEGG: sli:Slin_4595 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004655503.1 PFAM: Predicted permease YP_004655504.1 COGs: COG0339 Zn-dependent oligopeptidase; InterPro IPR001567; KEGG: sli:Slin_0934 peptidyl-dipeptidase DCP; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; PRIAM: Peptidyl-dipeptidase Dcp; SPTR: Peptidyl-dipeptidase Dcp YP_004655505.1 PFAM: Peptidase M3; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1282 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor YP_004655506.1 KEGG: dfe:Dfer_1283 conserved hypothetical signal peptide protein; SPTR: Conserved hypothetical signal peptide protein YP_004655507.1 KEGG: dfe:Dfer_4852 hypothetical protein; SPTR: uncharacterized protein YP_004655508.1 KEGG: sli:Slin_6580 hypothetical protein; SPTR: Membrane protein YP_004655510.1 InterPro IPR013216; KEGG: kfl:Kfla_1937 type 11 methyltransferase; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11 YP_004655511.1 PFAM: Methyltransferase domain; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: sli:Slin_0931 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004655512.1 PFAM: Predicted permease; InterPro IPR005149; KEGG: sli:Slin_0945 PadR family transcriptional regulator; PFAM: Transcriptional regulator PadR N-terminal-like; SPTR: Transcriptional regulator, PadR-like family YP_004655513.1 PFAM: Transcriptional regulator PadR-like family; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: shg:Sph21_3946 xylose isomerase domain-containing protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004655514.1 PFAM: Xylose isomerase-like TIM barrel; manually curated YP_004655515.1 InterPro IPR003838; KEGG: sli:Slin_0948 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004655516.1 PFAM: Predicted permease; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: dfe:Dfer_2089 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004655517.1 PFAM: Predicted permease; InterPro IPR003838; KEGG: sli:Slin_0927 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004655518.1 PFAM: Predicted permease; COGs: COG3727 DNA G:T-mismatch repair endonuclease; InterPro IPR004603; KEGG: cpi:Cpin_2561 DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; SPTR: DNA mismatch endonuclease Vsr; TIGRFAM: DNA mismatch endonuclease vsr YP_004655519.1 PFAM: DNA mismatch endonuclease Vsr; TIGRFAM: DNA mismatch endonuclease Vsr; InterPro IPR003838; KEGG: dfe:Dfer_4843 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004655520.1 PFAM: Predicted permease YP_004655521.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: sli:Slin_4589 ABC transporter; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein YP_004655522.1 PFAM: ABC transporter; InterPro IPR008815; KEGG: paa:Paes_1770 hypothetical protein; PFAM: 23S rRNA-associated protein; SPTR: S23 ribosomal protein YP_004655523.1 PFAM: S23 ribosomal protein; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_4837 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD YP_004655524.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_004655525.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR003593:IPR002078:IPR002197; KEGG: dfe:Dfer_4836 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family YP_004655526.1 PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterPro IPR003594; KEGG: dfe:Dfer_4824 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: PAS/PAC sensor signal transduction histidine kinase YP_004655527.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG3502 conserved hypothetical protein; InterPro IPR009297; KEGG: sli:Slin_5199 hypothetical protein; PFAM: Protein of unknown function DUF952; SPTR: uncharacterized protein YP_004655528.1 PFAM: Protein of unknown function (DUF952); COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance; InterPro IPR005496; KEGG: sli:Slin_5754 integral membrane protein TerC; PFAM: Integral membrane protein TerC; SPTR: Integral membrane protein TerC; TIGRFAM: integral membrane protein, TerC family YP_004655529.1 PFAM: Integral membrane protein TerC family; TIGRFAM: integral membrane protein, TerC family; KEGG: ppn:Palpr_0914 hypothetical protein; SPTR: uncharacterized protein YP_004655530.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dfe:Dfer_3250 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein YP_004655531.1 PFAM: Ndr family; COGs: COG1219 ATP-dependent protease Clp ATPase subunit; HAMAP: Clp protease, ATP-binding subunit ClpX; InterProIPR004487:IPR003593:IPR010603:IPR013093:IPR 019489; KEGG: dfe:Dfer_4573 sigma 54 interacting domain protein; PFAM: ATPase associated with various cellular activities, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: Sigma 54 interacting domain protein; TIGRFAM: Clp protease, ATP-binding subunit ClpX YP_004655532.1 PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX); KEGG: dps:DP2713 hypothetical protein; SPTR: uncharacterized protein YP_004655533.1 COGs: COG1566 Multidrug resistance efflux pump; KEGG: sli:Slin_0782 hypothetical protein; SPTR: uncharacterized protein YP_004655534.1 COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR003593:IPR005074:IPR001140:IPR003439; KEGG: phe:Phep_0558 ABC transporter-like protein; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related YP_004655535.1 PFAM: ABC transporter transmembrane region; ABC transporter; Peptidase C39 family; KEGG: pmo:Pmob_0677 hypothetical protein; SPTR: uncharacterized protein YP_004655536.1 TIGRFAM: radical SAM additional 4Fe4S-binding domain; SPTR: uncharacterized protein YP_004655537.1 Prodigal; manually curated YP_004655541.1 InterPro IPR001387; KEGG: sli:Slin_1627 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family YP_004655542.1 PFAM: Helix-turn-helix; COGs: COG0605 Superoxide dismutase; InterPro IPR019831:IPR019832; KEGG: dfe:Dfer_4203 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; PRIAM: Superoxide dismutase; SPTR: Superoxide dismutase YP_004655543.1 PFAM: Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, C-terminal domain; COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125; KEGG: sli:Slin_5394 CMP/dCMP deaminase zinc-binding protein; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: CMP/dCMP deaminase zinc-binding protein YP_004655544.1 PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro IPR006163; KEGG: sli:Slin_4413 phosphopantetheine-binding protein; PFAM: Phosphopantetheine-binding; SPTR: Phosphopantetheine-binding protein YP_004655545.1 PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein YP_004655546.1 COGs: COG0296 1 4-alpha-glucan branching enzyme; HAMAP: 1,4-alpha-glucan branching enzyme, core region; InterProIPR006407:IPR006589:IPR004193:IPR006047:IPR 006048; KEGG: dfe:Dfer_1955 1,4-alpha-glucan branching enzyme; PFAM: Alpha-amylase, C-terminal all beta; Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic region; PRIAM: 1,4-alpha-glucan branching enzyme; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; SPTR: 1,4-alpha-glucan-branching enzyme 2; TIGRFAM: 1,4-alpha-glucan branching enzyme, core region YP_004655547.1 PFAM: Alpha amylase, C-terminal all-beta domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain; TIGRFAM: alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase; COGs: COG3201 Nicotinamide mononucleotide transporter; InterPro IPR006419; KEGG: sli:Slin_5815 nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; SPTR: Nicotinamide mononucleotide transporter PnuC; TIGRFAM: Nicotinamide mononucleotide transporter PnuC YP_004655548.1 PFAM: Nicotinamide mononucleotide transporter; TIGRFAM: nicotinamide mononucleotide transporter PnuC; manually curated YP_004655549.1 PFAM: Peptidase M28 YP_004655550.1 KEGG: dfe:Dfer_3253 hypothetical protein; SPTR: uncharacterized protein YP_004655551.1 COGs: COG0611 Thiamine monophosphate kinase; InterPro IPR000728:IPR006283; KEGG: dfe:Dfer_3561 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; PRIAM: Thiamine-phosphate kinase; SPTR: Thiamine-monophosphate kinase; TIGRFAM: Thiamine-monophosphate kinase YP_004655552.1 PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: thiamine-monophosphate kinase; COGs: COG0225 Peptide methionine sulfoxide reductase; HAMAP: Peptide methionine sulphoxide reductase MsrA; InterPro IPR002569; KEGG: dfe:Dfer_3755 peptide methionine sulfoxide reductase; PFAM: Peptide methionine sulphoxide reductase MsrA; PRIAM: Peptide-methionine (S)-S-oxide reductase; SPTR: Peptide methionine sulfoxide reductase MsrA; TIGRFAM: Peptide methionine sulphoxide reductase MsrA YP_004655553.1 PFAM: Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase YP_004655554.1 KEGG: sro:Sros_3830 spheroidene monooxygenase; SPTR: Spheroidene monooxygenase YP_004655555.1 PFAM: Domain of unknown function (DUF3291); COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_4898 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related YP_004655556.1 PFAM: ABC transporter; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_4897 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein YP_004655557.1 PFAM: Outer membrane efflux protein; COGs: COG0682 Prolipoprotein diacylglyceryltransferase; HAMAP: Prolipoprotein diacylglyceryl transferase; InterPro IPR001640; KEGG: sli:Slin_1084 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; SPTR: Prolipoprotein diacylglyceryl transferase; TIGRFAM: Prolipoprotein diacylglyceryl transferase YP_004655558.1 PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; KEGG: dfe:Dfer_4315 hypothetical protein; SPTR: uncharacterized protein YP_004655559.1 COGs: COG3844 Kynureninase; InterPro IPR000192:IPR010111; KEGG: sli:Slin_1518 kynureninase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Kynureninase; SPTR: Kynureninase; TIGRFAM: Kynureninase YP_004655560.1 PFAM: Aminotransferase class-V; TIGRFAM: kynureninase; InterPro IPR013766; KEGG: dfe:Dfer_3953 thioredoxin domain; PFAM: Thioredoxin domain; SPTR: Thioredoxin domain YP_004655561.1 PFAM: Thioredoxin; KEGG: dfe:Dfer_1099 hypothetical protein; SPTR: uncharacterized protein YP_004655562.1 PFAM: PA14 domain; Domain of Unknown Function (DUF1080); KEGG: sli:Slin_4115 hypothetical protein; SPTR: uncharacterized protein YP_004655563.1 COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764:IPR001466; KEGG: sli:Slin_5392 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 3, N-terminal; Beta-lactamase-related; PRIAM: Beta-N-acetylhexosaminidase., Beta-lactamase; SPTR: Beta-N-acetylhexosaminidase YP_004655564.1 PFAM: Glycosyl hydrolase 3 N terminal domain; Beta-lactamase; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_4228 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug YP_004655565.1 PFAM: TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent receptor; KEGG: sli:Slin_5438 cell surface receptor IPT/TIG domain protein; SPTR: uncharacterized protein YP_004655567.1 KEGG: dfe:Dfer_3320 hypothetical protein; SPTR: uncharacterized protein YP_004655568.1 PFAM: Protein of unknown function (DUF3500); InterPro IPR006626; KEGG: sli:Slin_3272 hypothetical protein; SPTR: Parallel beta-helix repeat protein; TIGRFAM: parallel beta-helix repeat-containing protein YP_004655569.1 TIGRFAM: parallel beta-helix repeat-containing protein; COGs: COG0054 Riboflavin synthase beta-chain; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; InterPro IPR002180; KEGG: dfe:Dfer_3816 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; SPTR: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase YP_004655570.1 PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; COGs: COG0118 Glutamine amidotransferase; InterPro IPR000991:IPR010139; KEGG: sli:Slin_5533 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: Glutamine amidotransferase class-I, C-terminal; SPTR: Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; TIGRFAM: Imidazole glycerol phosphate synthase, subunit H YP_004655571.1 PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; KEGG: shg:Sph21_3595 protein of unknown function DUF2490; SPTR: uncharacterized protein YP_004655572.1 PFAM: Protein of unknown function (DUF2490); COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: rbi:RB2501_07250 rhodanese-like domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Thiosulfate sulfurtransferase GlpE YP_004655573.1 PFAM: Rhodanese-like domain; InterPro IPR008854; KEGG: wvi:Weevi_1737 thiopurine S-methyltransferase; PFAM: Thiopurine S-methyltransferase; SPTR: Thiopurine S-methyltransferase YP_004655574.1 PFAM: Thiopurine S-methyltransferase (TPMT) YP_004655575.1 COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR006680:IPR013108; KEGG: dfe:Dfer_3692 dihydroorotase; PFAM: Amidohydrolase 1; Amidohydrolase 3; PRIAM: Allantoinase; SPTR: Allantoinase YP_004655576.1 PFAM: Amidohydrolase; TIGRFAM: dihydroorotase, multifunctional complex type YP_004655577.1 COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154:IPR013149; KEGG: sli:Slin_5937 alcohol dehydrogenase zinc-binding domain protein; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; PRIAM: Trans-2-enoyl-CoA reductase (NADPH); SPTR: Alcohol dehydrogenase zinc-binding domain protein YP_004655578.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: sli:Slin_5448 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase YP_004655579.1 PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; KEGG: sli:Slin_6031 hypothetical protein; SPTR: uncharacterized protein YP_004655580.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_6032 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004655581.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; HAMAP:1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; InterPro IPR006062:IPR006063; KEGG: dfe:Dfer_4238 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: Histidine biosynthesis; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR:1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_004655582.1 PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro IPR019734:IPR001440; KEGG: mac:MA3293 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: uncharacterized protein YP_004655583.1 PFAM: Tetratricopeptide repeat YP_004655585.1 InterPro IPR016047; PFAM: Peptidase M23; SPTR: enzyme with aminotransferase class-III domain protein YP_004655586.1 PFAM: Peptidase M23 YP_004655587.1 COGs: COG2173 D-alanyl-D-alanine dipeptidase; InterPro IPR000755; KEGG: dsh:Dshi_3149 D-alanyl-D-alanine dipeptidase; PFAM: Peptidase M15D, vanX D-ala-D-ala dipeptidase; SPTR: D-alanyl-d-alanine dipeptidase YP_004655588.1 PFAM: D-ala-D-ala dipeptidase; COGs: COG1193 Mismatch repair ATPase (MutS family); HAMAP: MutS2 protein; InterPro IPR007696:IPR000432:IPR002625:IPR005747; KEGG: dfe:Dfer_5060 MutS2 family protein; PFAM: Smr protein/MutS2 C-terminal; DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; Smr protein/MutS2 C-terminal; SPTR: MutS2 family protein; TIGRFAM: DNA mismatch repair protein MutS, type 2 YP_004655589.1 PFAM: MutS domain V; Smr domain; TIGRFAM: MutS2 family protein; COGs: COG5505 integral membrane protein; InterPro IPR008537; KEGG: sli:Slin_1701 hypothetical protein; PFAM: Protein of unknown function DUF819; SPTR: uncharacterized protein YP_004655590.1 PFAM: Protein of unknown function (DUF819); COGs: COG0796 Glutamate racemase; HAMAP: Glutamate racemase; InterPro IPR004391:IPR015942; KEGG: sli:Slin_2377 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; PRIAM: Glutamate racemase; SPTR: Glutamate racemase; TIGRFAM: Glutamate racemase YP_004655591.1 PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: glutamate racemase; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: sli:Slin_5020 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004655592.1 PFAM: Predicted permease; COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: mtt:Ftrac_3238 UspA domain-containing protein; PFAM: UspA; SPTR: Universal stress protein family YP_004655593.1 PFAM: Universal stress protein family; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: sli:Slin_3020 histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SPTR: Histidine kinase YP_004655594.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0316 conserved hypothetical protein; InterPro IPR000361; KEGG: dfe:Dfer_5062 HesB/YadR/YfhF-family protein; PFAM: FeS cluster biogenesis; SPTR: HesB/YadR/YfhF-family protein YP_004655595.1 PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein; KEGG: sli:Slin_3022 hypothetical protein; SPTR: uncharacterized protein YP_004655596.1 KEGG: sli:Slin_6007 endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase YP_004655597.1 COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR006805:IPR015890; KEGG: dfe:Dfer_3790 anthranilate synthase; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal; PRIAM: Anthranilate synthase; SPTR: Anthranilate synthase YP_004655598.1 PFAM: chorismate binding enzyme; Anthranilate synthase component I, N terminal region; KEGG: sli:Slin_3627 hypothetical protein; SPTR: uncharacterized protein YP_004655599.1 COGs: COG1678 transcriptional regulator protein; HAMAP: Protein of unknown function DUF179; InterPro IPR003774; KEGG: dfe:Dfer_4074 protein of unknown function DUF179; PFAM: Protein of unknown function DUF179; SPTR: UPF0301 protein M23134_01239 YP_004655600.1 PFAM: Uncharacterized ACR, COG1678; COGs: COG2102 ATPase of PP-loop superfamily; InterPro IPR002761; KEGG: fjo:Fjoh_2929 ATP binding protein; PFAM: Protein of unknown function DUF71, ATP-binding region; SPTR: ANH superfamily adenosine nucleotide alpha hydrolase; TIGRFAM: Protein of unknown function DUF71, ATP-binding region YP_004655601.1 PFAM: ATP-binding region; TIGRFAM: MJ0570-related uncharacterized domain; KEGG: shg:Sph21_3372 hypothetical protein; SPTR: uncharacterized protein YP_004655602.1 KEGG: dfe:Dfer_3393 hypothetical protein; SPTR: uncharacterized protein YP_004655605.1 Prodigal; manually curated YP_004655606.1 PFAM: EamA-like transporter family; KEGG: sli:Slin_6041 hypothetical protein; SPTR: uncharacterized protein YP_004655607.1 InterPro IPR001451; KEGG: sli:Slin_6090 hypothetical protein; SPTR: uncharacterized protein YP_004655608.1 TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; COGs: COG0246 Mannitol-1-phosphate/altronate dehydrogenase; InterPro IPR013131:IPR013118; KEGG: sli:Slin_1056 mannitol dehydrogenase domain protein; PFAM: Mannitol dehydrogenase, C-terminal; Mannitol dehydrogenase, N-terminal; PRIAM: Tagaturonate reductase; SPTR: Mannitol dehydrogenase domain protein YP_004655609.1 PFAM: Mannitol dehydrogenase C-terminal domain; Mannitol dehydrogenase Rossmann domain; COGs: COG3358 conserved hypothetical protein; InterPro IPR012467; KEGG: sli:Slin_0288 hypothetical protein; PFAM: Protein of unknown function DUF1684; SPTR: uncharacterized protein YP_004655610.1 PFAM: Protein of unknown function (DUF1684); KEGG: cyj:Cyan7822_0461 hypothetical protein; SPTR: uncharacterized protein YP_004655611.1 COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; InterProIPR004532:IPR002547:IPR005146:IPR005147:IPR 005121; KEGG: sli:Slin_0287 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/B4 tRNA-binding domain; tRNA-binding region; tRNA synthetase, B5; Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding; SPTR: Phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial YP_004655612.1 PFAM: tRNA synthetase B5 domain; Ferredoxin-fold anticodon binding domain; B3/4 domain; tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial YP_004655613.1 KEGG: sli:Slin_0285 hypothetical protein; SPTR: uncharacterized protein YP_004655614.1 COGs: COG1418 HD superfamily hydrolase; HAMAP: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; InterProIPR004087:IPR003607:IPR018111:IPR006674:IPR 017705:IPR006675; KEGG: dfe:Dfer_0007 phosphodiesterase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; K Homology, type 1, subgroup; SMART: Metal-dependent phosphohydrolase, HD region; K Homology; SPTR: RNA binding metal dependent phosphohydrolase; TIGRFAM: 2,3-cyclic-nucleotide 2-phosphodiesterase; HDIG YP_004655615.1 PFAM: KH domain; HD domain; Domain of unknown function (DUF3552); TIGRFAM: conserved hypothetical protein YmdA/YtgF; uncharacterized domain HDIG; COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: sli:Slin_5821 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein YP_004655616.1 PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1; COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151:IPR004447; KEGG: sli:Slin_4394 carboxyl-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: Carboxyl-terminal protease; TIGRFAM: Peptidase S41A, C-terminal protease YP_004655617.1 PFAM: Peptidase S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterProIPR002421:IPR008918:IPR002562:IPR001098:IPR 020046:IPR020047:IPR018320; KEGG: dfe:Dfer_1096 DNA polymerase I; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease; DNA-directed DNA polymerase, family A, palm domain; SPTR: DNA polymerase I; TIGRFAM: DNA polymerase 1 YP_004655618.1 PFAM: 5'-3' exonuclease, C-terminal SAM fold; 3'-5' exonuclease; 5'-3' exonuclease, N-terminal resolvase-like domain; DNA polymerase A; TIGRFAM: DNA polymerase I; KEGG: sli:Slin_4819 hypothetical protein; SPTR: uncharacterized protein YP_004655619.1 KEGG: sli:Slin_5168 hypothetical protein; SPTR: uncharacterized protein YP_004655621.1 COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR003335:IPR005791:IPR005665; KEGG: sli:Slin_5169 protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: Protein-export membrane protein SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein; SecF protein YP_004655622.1 PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: ran:Riean_1745 amino acid/polyamine/organocation transporter, apc superfamily; PFAM: Amino acid permease-associated region; SPTR: Amino acid/polyamine/organocation transporter, APC superfamily YP_004655623.1 PFAM: Amino acid permease; KEGG: sli:Slin_4983 hypothetical protein; SPTR: uncharacterized protein YP_004655624.1 InterPro IPR011662; KEGG: dfe:Dfer_2831 hypothetical protein; PFAM: Secretin/TonB, short N-terminal; SPTR: uncharacterized protein YP_004655625.1 PFAM: Secretin and TonB N terminus short domain; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: dfe:Dfer_2830 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR YP_004655626.1 PFAM: FecR protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284:IPR014327; KEGG: dfe:Dfer_2829 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70 YP_004655627.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004655628.1 COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: bwe:BcerKBAB4_1778 fatty acid desaturase; PFAM: Fatty acid desaturase, type 1; SPTR: fatty acid desaturase YP_004655629.1 PFAM: Fatty acid desaturase; InterPro IPR007921; KEGG: shw:Sputw3181_0259 CHAP domain-containing protein; PFAM: Cysteine, histidine-dependent amidohydrolase/peptidase; SPTR: CHAP domain-containing protein YP_004655630.1 PFAM: CHAP domain; InterPro IPR019734:IPR001440; KEGG: ter:Tery_3996 tetratricopeptide TPR_2; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide TPR_2 YP_004655631.1 PFAM: Tetratricopeptide repeat; InterPro IPR019734:IPR001440; KEGG: bpo:BP951000_1446 TPR domain-containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: TPR domain-containing protein YP_004655632.1 PFAM: Tetratricopeptide repeat; InterPro IPR019734:IPR001440; KEGG: npu:Npun_R4324 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Similar to tr|Q8YMK7|Q8YMK7 YP_004655633.1 PFAM: Tetratricopeptide repeat YP_004655634.1 KEGG: sli:Slin_1809 hypothetical protein; SPTR: uncharacterized protein YP_004655635.1 PFAM: Protein of unknown function (DUF2807); COGs: COG0060 Isoleucyl-tRNA synthetase; HAMAP: Isoleucyl-tRNA synthetase; InterPro IPR002300:IPR013155:IPR002301; KEGG: dfe:Dfer_4664 isoleucyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ia; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; PRIAM: Isoleucine--tRNA ligase; SPTR: Isoleucyl-tRNA synthetase; TIGRFAM: Isoleucyl-tRNA synthetase, class Ia YP_004655636.1 PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: isoleucyl-tRNA synthetase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_3427 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004655637.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3920 Signal transduction histidine kinase; InterPro IPR019734:IPR003594:IPR001440:IPR011495; KEGG: sli:Slin_3428 signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor region; Tetratricopeptide TPR-1; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; Tetratricopeptide repeat; SPTR: Signal transduction histidine kinase YP_004655638.1 PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro IPR004843; KEGG: sli:Slin_0042 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase YP_004655639.1 PFAM: Calcineurin-like phosphoesterase; InterPro IPR000086; KEGG: dfe:Dfer_3691 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase YP_004655640.1 PFAM: NUDIX domain; TIGRFAM: mutator mutT protein; KEGG: sli:Slin_5436 cytoplasmic protein; SPTR: cytoplasmic protein YP_004655641.1 KEGG: sli:Slin_3498 hypothetical protein; SPTR: uncharacterized protein YP_004655642.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: sli:Slin_3471 gliding motility-associated ABC transporter ATP-binding subunit GldA; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Gliding motility-associated ABC transporter ATP-binding subunit GldA YP_004655643.1 PFAM: ABC transporter; TIGRFAM: gliding motility-associated ABC transporter ATP-binding subunit GldA; KEGG: dfe:Dfer_4156 hypothetical protein; SPTR: uncharacterized protein YP_004655644.1 PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX); COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase; HAMAP: GTP cyclohydrolase-2; InterPro IPR000422:IPR000926; KEGG: sli:Slin_6384 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: DHBP synthase RibB; GTP cyclohydrolase II; SPTR: Riboflavin biosynthesis protein ribBA; TIGRFAM: DHBP synthase RibB; GTP cyclohydrolase II YP_004655645.1 PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; KEGG: sli:Slin_6385 hypothetical protein; SPTR: uncharacterized protein YP_004655646.1 COGs: COG5337 Spore coat assembly protein; InterPro IPR014867; KEGG: gau:GAU_1784 hypothetical protein; PFAM: Spore coat protein CotH; SPTR: uncharacterized protein YP_004655647.1 PFAM: CotH protein; InterPro IPR018966; KEGG: hau:Haur_1490 hypothetical protein; PFAM: VTC domain; SPTR: uncharacterized protein YP_004655648.1 PFAM: VTC domain; KEGG: dal:Dalk_4019 hypothetical protein; SPTR: uncharacterized protein YP_004655649.1 InterPro IPR019619; KEGG: bth:BT_3499 hypothetical protein; PFAM: Protein of unknown function DUF2490; SPTR: uncharacterized protein YP_004655650.1 PFAM: Protein of unknown function (DUF2490); COGs: COG1521 transcriptional regulator protein; HAMAP: Type III pantothenate kinase; InterPro IPR004619; KEGG: dfe:Dfer_4140 transcriptional acitvator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor; SPTR: Type III pantothenate kinase 1; TIGRFAM: Bordetella pertussis Bvg accessory factor YP_004655651.1 PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006102:IPR006103:IPR004199; KEGG: dfe:Dfer_4139 beta-galactosidase; PFAM: Glycoside hydrolase 2, TIM barrel; Glycoside hydrolase 2, carbohydrate-binding; Glycoside hydrolase 2, immunoglobulin-like beta-sandwich; Glycoside hydrolase, family 42, domain 5; PRIAM: Beta-galactosidase; SPTR: Beta-galactosidase YP_004655652.1 PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; Beta galactosidase small chain; COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: sli:Slin_5397 peptidase M16 domain protein; PFAM: Peptidase M16, N-terminal; Peptidase M16, C-terminal; SPTR: Peptidase M16 domain protein YP_004655653.1 PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16); COGs: COG1739 conserved hypothetical protein; InterPro IPR001498; KEGG: psn:Pedsa_0904 uncharacterized protein family UPF0029, Impact, N-terminal protein; PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; SPTR: uncharacterized protein YP_004655654.1 PFAM: Uncharacterized protein family UPF0029; TIGRFAM: uncharacterized protein, YigZ family; Prodigal; manually curated YP_004655655.1 SPTR: uncharacterized protein YP_004655656.1 InterPro IPR012910; KEGG: mtt:Ftrac_1561 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug YP_004655657.1 PFAM: TonB-dependent Receptor Plug Domain YP_004655659.1 KEGG: psn:Pedsa_1651 transcriptional regulator, Crp/Fnr family; SPTR: transcriptional regulator, Crp/Fnr family YP_004655660.1 COGs: COG0177 EndoIII-related endonuclease; InterPro IPR003265:IPR003651:IPR005759; KEGG: sli:Slin_6030 endonuclease III; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD domain; SPTR: Endonuclease III; TIGRFAM: Endonuclease III/Nth YP_004655661.1 PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: endonuclease III; COGs: COG1932 Phosphoserine aminotransferase; InterPro IPR000192; KEGG: sli:Slin_1073 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Phosphoserine transaminase; SPTR: Aminotransferase class V YP_004655662.1 PFAM: Aminotransferase class-V; TIGRFAM: phosphoserine aminotransferase, COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: sli:Slin_1596 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein YP_004655663.1 PFAM: Protein of unknown function (DUF820); COGs: COG3542 conserved hypothetical protein; InterPro IPR009327; KEGG: sli:Slin_5607 hypothetical protein; PFAM: Protein of unknown function DUF985; SPTR: uncharacterized protein YP_004655664.1 PFAM: Cupin superfamily (DUF985); COGs: COG0024 Methionine aminopeptidase; InterPro IPR000994:IPR002467; KEGG: cpi:Cpin_0635 methionine aminopeptidase, type I; PFAM: Peptidase M24, structural domain; PRIAM: Methionyl aminopeptidase; SPTR: Methionine aminopeptidase; TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1 YP_004655665.1 PFAM: Metallopeptidase M24; TIGRFAM: methionine aminopeptidase, type I; COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544; KEGG: dfe:Dfer_3559 aminotransferase class IV; PFAM: Aminotransferase, class IV; PRIAM: D-amino-acid transaminase; SPTR: Aminotransferase class IV YP_004655666.1 PFAM: Aminotransferase class IV; KEGG: lby:Lbys_2831 TonB-dependent receptor; SPTR: TonB-dependent receptor YP_004655667.1 InterPro IPR019115; KEGG: sli:Slin_3442 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: uncharacterized protein YP_004655668.1 PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; COGs: COG5002 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: lby:Lbys_2833 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Integral membrane sensor signal transduction histidine kinase YP_004655669.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: lby:Lbys_2834 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family YP_004655670.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; InterPro IPR008631; KEGG: dfe:Dfer_3735 glycogen (starch) synthase; PFAM: Glycogen synthase; PRIAM: Glycogen(starch) synthase; SPTR: Glycogen (Starch) synthase YP_004655671.1 PFAM: Glycogen synthase; COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: chu:CHU_2256 Zn-dependent hydrolase; SPTR: Possible Zn-dependent hydrolase YP_004655672.1 COGs: COG4299 conserved hypothetical protein; InterPro IPR019259; KEGG: dfe:Dfer_2495 hypothetical protein; PFAM: Protein of unknown function DUF2261, transmembrane; SPTR: uncharacterized protein YP_004655673.1 COGs: COG0730 permease; InterPro IPR002781; KEGG: fjo:Fjoh_1500 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: uncharacterized protein YP_004655674.1 PFAM: Sulfite exporter TauE/SafE; COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277; KEGG: dfe:Dfer_2612 cystathionine gamma-synthase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; SPTR: Cystathionine gamma-synthase YP_004655675.1 PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: O-succinylhomoserine sulfhydrylase; COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; InterPro IPR002500:IPR004511:IPR011798; KEGG: dfe:Dfer_2615 adenylylsulfate reductase, thioredoxin dependent; PFAM: Phosphoadenosine phosphosulphate reductase; PRIAM: Phosphoadenylyl-sulfate reductase (thioredoxin); SPTR: Adenylylsulfate reductase, thioredoxin dependent; TIGRFAM: Adenylylsulphate reductase, thioredoxin dependent; Phosphoadenosine phosphosulphate reductase CysH-type YP_004655676.1 PFAM: Phosphoadenosine phosphosulfate reductase; TIGRFAM: thioredoxin-dependent adenylylsulfate APS reductase; phosophoadenylyl-sulfate reductase (thioredoxin); InterPro IPR008815; KEGG: mtt:Ftrac_1685 s23 ribosomal protein; PFAM: 23S rRNA-associated protein; SPTR: Intervening sequence YP_004655677.1 PFAM: S23 ribosomal protein; COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; InterPro IPR002500:IPR011784; KEGG: dfe:Dfer_2616 sulfate adenylyltransferase subunit 2; PFAM: Phosphoadenosine phosphosulphate reductase; PRIAM: Sulfate adenylyltransferase; SPTR: Sulfate adenylyltransferase, small subunit; TIGRFAM: Sulphate adenylyltransferase, small subunit YP_004655678.1 PFAM: Phosphoadenosine phosphosulfate reductase; TIGRFAM: sulfate adenylyltransferase, small subunit; COGs: COG2895 GTPase - Sulfate adenylate transferase subunit 1; InterPro IPR000795:IPR004161:IPR005225:IPR011779; KEGG: dfe:Dfer_2617 sulfate adenylyltransferase, large subunit; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; PRIAM: Sulfate adenylyltransferase; SPTR: Sulfate adenylyltransferase, large subunit; TIGRFAM: Sulphate adenylyltransferase, large subunit; Small GTP-binding protein YP_004655679.1 PFAM: Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: sulfate adenylyltransferase, large subunit; small GTP-binding protein domain; COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: sli:Slin_0456 glycosyl hydrolase 88; PFAM: Glycosyl hydrolase, family 88; SPTR: Glycosyl hydrolase 88 YP_004655680.1 PFAM: Glycosyl Hydrolase 88; Prodigal; manually curated YP_004655681.1 COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: sli:Slin_1806 glycosyl hydrolase 88; PFAM: Glycosyl hydrolase, family 88; SPTR: Glycosyl hydrolase 88 YP_004655682.1 PFAM: Glycosyl Hydrolase 88; COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR000524; KEGG: sli:Slin_3237 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; SPTR: Transcriptional regulator, GntR family YP_004655683.1 PFAM: Bacterial regulatory proteins, gntR family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_4386 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004655684.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; KEGG: dfe:Dfer_4105 hypothetical protein; SPTR: uncharacterized protein YP_004655685.1 COGs: COG4232 Thiol:disulfide interchange protein; InterPro IPR003834; KEGG: dfe:Dfer_4173 cytochrome c biogenesis protein transmembrane region; PFAM: Cytochrome c assembly protein, transmembrane region; PRIAM: Protein-disulfide reductase; SPTR: Cytochrome c biogenesis protein transmembrane region YP_004655686.1 PFAM: Cytochrome C biogenesis protein transmembrane region; Protein of unknown function, DUF255; COGs: COG0795 permease; InterPro IPR005495; KEGG: sli:Slin_2956 permease YjgP/YjgQ family protein; PFAM: Permease YjgP/YjgQ, predicted; SPTR: Permease YjgP/YjgQ family protein YP_004655687.1 PFAM: Predicted permease YjgP/YjgQ family YP_004655688.1 KEGG: sli:Slin_5131 hypothetical protein; SPTR: uncharacterized protein YP_004655689.1 PFAM: Protein of unknown function (DUF1044); COGs: COG0308 Aminopeptidase N; KEGG: sli:Slin_5082 Zn-dependent aminopeptidase; SPTR: Zn-dependent aminopeptidase YP_004655690.1 PFAM: Peptidase M1; COGs: COG3173 aminoglycoside phosphotransferase; InterPro IPR002575; KEGG: sli:Slin_1393 aminoglycoside phosphotransferase; PFAM: Aminoglycoside phosphotransferase; SPTR: Aminoglycoside phosphotransferase YP_004655691.1 PFAM: Phosphotransferase enzyme family; KEGG: dfe:Dfer_1194 hypothetical protein; SPTR: uncharacterized protein YP_004655692.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_3233 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein YP_004655693.1 PFAM: Outer membrane efflux protein; COGs: COG1574 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR013108; KEGG: sli:Slin_3234 amidohydrolase; PFAM: Amidohydrolase 3; SPTR: Amidohydrolase 3 YP_004655694.1 PFAM: Amidohydrolase; KEGG: cpi:Cpin_0983 hypothetical protein; SPTR: uncharacterized protein YP_004655696.1 KEGG: dfe:Dfer_2869 hypothetical protein; SPTR: uncharacterized protein YP_004655697.1 KEGG: lby:Lbys_0531 peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: Peptidase S8 and S53 subtilisin kexin sedolisin YP_004655698.1 InterPro IPR005821; KEGG: sli:Slin_0024 ion transporter; PFAM: Ion transport; SPTR: Ion transport protein YP_004655699.1 PFAM: Ion transport protein; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dfe:Dfer_2953 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1 YP_004655700.1 PFAM: Glycosyl transferases group 1; COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR001678; KEGG: sli:Slin_5890 Fmu (Sun) domain protein; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; SPTR: Fmu (Sun) domain protein YP_004655701.1 PFAM: NOL1/NOP2/sun family; KEGG: atm:ANT_29240 glycosyltransferase; SPTR: glycosyltransferase YP_004655703.1 InterPro IPR012910:IPR000531; KEGG: cpi:Cpin_3725 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor YP_004655704.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; KEGG: chu:CHU_1318 hypothetical protein; SPTR: uncharacterized protein YP_004655705.1 PFAM: Protein of unknown function (DUF3089) YP_004655706.1 COGs: COG0836 Mannose-1-phosphate guanylyltransferase; InterPro IPR005835; KEGG: sli:Slin_5196 mannose-1-phosphate guanylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Mannose-1-phosphate guanylyltransferase; SPTR: Mannose-1-phosphate guanylyltransferase; manually curated YP_004655707.1 PFAM: Nucleotidyl transferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006175; KEGG: nde:NIDE0050 endoribonuclease L-PSP, YjgF-like; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP YP_004655708.1 PFAM: Endoribonuclease L-PSP; COGs: COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; HAMAP: Molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: sli:Slin_2808 hypothetical protein; SPTR: Molybdenum cofactor biosynthesis protein C YP_004655709.1 COGs: COG0429 hydrolase of the alpha/beta-hydrolase fold; InterPro IPR000073; KEGG: dfe:Dfer_4689 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein YP_004655710.1 PFAM: alpha/beta hydrolase fold; COGs: COG0274 Deoxyribose-phosphate aldolase; InterPro IPR002915; KEGG: sli:Slin_4419 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; SPTR: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_004655711.1 PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase; InterPro IPR000209; KEGG: sli:Slin_5990 hypothetical protein; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: uncharacterized protein YP_004655712.1 PFAM: Subtilase; InterPro IPR000209; KEGG: sli:Slin_5991 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Peptidase S8 and S53 subtilisin kexin sedolisin YP_004655713.1 PFAM: Subtilase; InterPro IPR004691:IPR018402; KEGG: sli:Slin_1551 malonate transporter MadM subunit; PFAM: Malonate/sodium symporter MadM subunit, N-terminal; SPTR: Malonate transporter, MadM subunit; TIGRFAM: Malonate/sodium symporter MadM subunit YP_004655714.1 PFAM: Malonate/sodium symporter MadM subunit; TIGRFAM: malonate transporter, MadM subunit; InterPro IPR004690; KEGG: sli:Slin_1552 malonate transporter MadL subunit; PFAM: Malonate transporter MadL subunit; SPTR: Malonate transporter, MadL subunit; TIGRFAM: Malonate transporter MadL subunit YP_004655715.1 PFAM: Malonate transporter MadL subunit; TIGRFAM: malonate transporter, MadL subunit; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: sli:Slin_1553 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: AMP-dependent synthetase and ligase YP_004655716.1 PFAM: AMP-binding enzyme; COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593:IPR011579; KEGG: mtt:Ftrac_2734 hypothetical protein; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein YP_004655717.1 PFAM: Nuclease-related domain; COGs: COG1284 conserved hypothetical protein; InterPro IPR003740:IPR019264; KEGG: sli:Slin_1588 hypothetical protein; PFAM: Protein of unknown function DUF2179; Protein of unknown function DUF161; SPTR: uncharacterized protein YP_004655718.1 PFAM: Uncharacterized BCR, YitT family COG1284; Uncharacterized protein conserved in bacteria (DUF2179); manually curated YP_004655719.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: sli:Slin_3447 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase YP_004655720.1 PFAM: Acyltransferase; COGs: COG0381 UDP-N-acetylglucosamine 2-epimerase; InterPro IPR003331; KEGG: acd:AOLE_19095 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; PRIAM: UDP-N-acetylglucosamine 2-epimerase; SPTR: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase YP_004655721.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; COGs: COG1393 Arsenate reductase and related protein glutaredoxin family; InterPro IPR006504:IPR006660; KEGG: bpl:BURPS1106A_2506 ArsC family protein; PFAM: Arsenate reductase-like; SPTR: ArsC family protein; TIGRFAM: Conserved hypothetical protein, ArsC related YP_004655722.1 PFAM: ArsC family; TIGRFAM: transcriptional regulator, Spx/MgsR family; KEGG: sli:Slin_1736 hypothetical protein; SPTR: uncharacterized protein YP_004655723.1 COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_3963 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related YP_004655724.1 PFAM: ABC transporter; COGs: COG0805 Sec-independent protein secretion pathway component TatC; InterPro IPR019822:IPR002033; KEGG: dfe:Dfer_3888 sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; SPTR: Sec-independent protein translocase, TatC subunit; TIGRFAM: Twin arginine-targeting protein translocase, TatC YP_004655725.1 PFAM: Sec-independent protein translocase (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC; KEGG: dfe:Dfer_4243 hypothetical protein; SPTR: uncharacterized protein YP_004655726.1 COGs: COG1646 phosphate-binding protein with TIM-barrel fold; HAMAP: Geranylgeranylglyceryl phosphate synthase; InterPro IPR010946:IPR008205; KEGG: dfe:Dfer_4244 geranylgeranylglyceryl phosphate synthase-like protein; PFAM: Geranylgeranylglyceryl phosphate synthase-like; SPTR: Geranylgeranylglyceryl phosphate synthase; TIGRFAM: Geranylgeranylglyceryl phosphate synthase; Geranylgeranylglyceryl phosphate synthase-like YP_004655727.1 PFAM: PcrB family; TIGRFAM: geranylgeranylglyceryl phosphate synthase; phosphoglycerol geranylgeranyltransferase; KEGG: sli:Slin_0252 hypothetical protein; SPTR: uncharacterized protein YP_004655728.1 COGs: COG0018 Arginyl-tRNA synthetase; HAMAP: Arginyl-tRNA synthetase, class Ic; InterPro IPR001278:IPR005148:IPR015945:IPR008909; KEGG: dfe:Dfer_2678 arginyl-tRNA synthetase; PFAM: DALR anticodon binding; Arginyl-tRNA synthetase, class Ic, core; Arginyl tRNA synthetase, class Ic, N-terminal; PRIAM: Arginine--tRNA ligase; SPTR: Arginyl-tRNA synthetase; TIGRFAM: Arginyl-tRNA synthetase, class Ic YP_004655729.1 PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase; InterPro IPR000182; KEGG: npu:Npun_R0931 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase YP_004655730.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR004527:IPR020058; KEGG: dfe:Dfer_4262 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; PRIAM: Glutamate--tRNA ligase; SPTR: Glutamyl-tRNA synthetase; TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial YP_004655731.1 PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: dfe:Dfer_3647 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein YP_004655732.1 PFAM: Protein of unknown function (DUF820); COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR010140:IPR004013; KEGG: tro:trd_A0397 histidinol-phosphatase; PFAM: PHP, C-terminal; SPTR: histidinol-phosphatase; TIGRFAM: Histidinol phosphate phosphatase, HisJ YP_004655733.1 PFAM: PHP domain; TIGRFAM: histidinol phosphate phosphatase HisJ family; KEGG: phe:Phep_3158 hypothetical protein YP_004655734.1 COGs: COG1476 transcriptional regulator protein; InterPro IPR001387; KEGG: sli:Slin_0313 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: uncharacterized protein YP_004655735.1 PFAM: Helix-turn-helix; KEGG: sli:Slin_0312 hypothetical protein; SPTR: uncharacterized protein YP_004655736.1 COGs: COG1528 Ferritin-like protein; InterPro IPR008331; KEGG: dfe:Dfer_2507 ferritin Dps family protein; PFAM: Ferritin/Dps protein; SPTR: Ferritin Dps family protein YP_004655737.1 PFAM: Ferritin-like domain; InterPro IPR006104; KEGG: dfe:Dfer_3461 hypothetical protein; PFAM: Glycoside hydrolase 2, carbohydrate-binding; SPTR: uncharacterized protein YP_004655738.1 PFAM: Glycosyl hydrolases family 2, sugar binding domain; KEGG: sli:Slin_4047 hypothetical protein; SPTR: uncharacterized protein YP_004655739.1 COGs: COG1859 RNA:NAD 2'-phosphotransferase; HAMAP: RNA 2'-phosphotransferase; InterPro IPR002745; KEGG: ava:Ava_4639 RNA 2'-phosphotransferase-like protein; PFAM: Phosphotransferase KptA/Tpt1; SPTR: Probable RNA 2'-phosphotransferase YP_004655740.1 PFAM: RNA 2'-phosphotransferase, Tpt1 / KptA family; COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR013216:IPR001310; KEGG: sli:Slin_4049 histidine triad (HIT) protein; PFAM: Histidine triad (HIT) protein; Methyltransferase type 11; SPTR: Histidine triad (HIT) protein YP_004655741.1 PFAM: HIT domain; KEGG: bfr:BF2709 hypothetical protein; SPTR: uncharacterized protein YP_004655742.1 PFAM: RNA ligase; COGs: COG4639 kinase; KEGG: cpi:Cpin_6277 hypothetical protein; SPTR: tRNA nucleotidyltransferase/poly(A) polymerase YP_004655743.1 PFAM: HD domain; COGs: COG0514 Superfamily II DNA helicase; InterProIPR006293:IPR018329:IPR014001:IPR001650:IPR 002121:IPR011545:IPR018982; KEGG: dfe:Dfer_3877 ATP-dependent DNA helicase RecQ; PFAM: RQC domain; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type, N-terminal YP_004655744.1 PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; COGs: COG1770 Protease II; InterPro IPR004106:IPR001375; KEGG: sli:Slin_4734 oligopeptidase B; PFAM: Peptidase S9A, oligopeptidase, N-terminal beta-propeller; Peptidase S9, prolyl oligopeptidase, catalytic domain; PRIAM: Oligopeptidase B; SPTR: Oligopeptidase B YP_004655745.1 PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: psn:Pedsa_2729 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein YP_004655746.1 PFAM: Protein of unknown function (DUF820); COGs: COG0663 Carbonic anhydrase/acetyltransferase isoleucine patch superfamily; InterPro IPR001451; KEGG: lby:Lbys_3230 carbonic anhydrase/acetyltransferase isoleucine patch superfamily-like protein; SPTR: Carbonic anhydrase/acetyltransferase isoleucine patch superfamily-like protein YP_004655747.1 COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_1837 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS YP_004655748.1 PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_1836 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004655749.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_3785 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: GDP-L-fucose synthase; SPTR: NAD-dependent epimerase/dehydratase YP_004655750.1 PFAM: NAD dependent epimerase/dehydratase; COGs: COG0761 Penicillin tolerance protein; InterPro IPR003451; KEGG: dfe:Dfer_3543 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein; PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SPTR: Hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: LytB protein YP_004655751.1 PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming); InterPro IPR004843; KEGG: dfe:Dfer_3294 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase YP_004655752.1 PFAM: Calcineurin-like phosphoesterase; COGs: COG0169 Shikimate 5-dehydrogenase; InterPro IPR013708:IPR006151; KEGG: dfe:Dfer_4321 shikimate dehydrogenase substrate binding domain protein; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; SPTR: Shikimate dehydrogenase substrate binding domain protein YP_004655753.1 PFAM: Shikimate dehydrogenase substrate binding domain; TIGRFAM: shikimate 5-dehydrogenase; InterPro IPR005181:IPR000601; KEGG: dfe:Dfer_4090 protein of unknown function DUF303 acetylesterase PFAM: Protein of unknown function DUF303, acetylesterase ; PKD; SPTR: uncharacterized protein YP_004655754.1 PFAM: Domain of unknown function (DUF303); COGs: COG0536 GTPase; HAMAP: GTPase obg; InterPro IPR014100:IPR005225:IPR006169:IPR002917; KEGG: sli:Slin_5095 GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related; SPTR: GTPase obg; TIGRFAM: GTP-binding protein Obg/CgtA; Small GTP-binding protein YP_004655755.1 PFAM: GTPase of unknown function; GTP1/OBG; TIGRFAM: Obg family GTPase CgtA; small GTP-binding protein domain; COGs: COG0563 Adenylate kinase and related kinase; HAMAP: Adenylate kinase; InterPro IPR006259:IPR000850; KEGG: lby:Lbys_3218 adenylate kinase; PFAM: Adenylate kinase; SPTR: Adenylate kinase; TIGRFAM: Adenylate kinase, subfamily YP_004655756.1 PFAM: Adenylate kinase; TIGRFAM: adenylate kinases; KEGG: dfe:Dfer_4093 hypothetical protein; SPTR: uncharacterized protein YP_004655757.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: dfe:Dfer_4094 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase YP_004655758.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: sli:Slin_5387 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family YP_004655759.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; InterPro IPR006342; KEGG: bmj:BMULJ_04341 SAM-dependent methyltransferase; SPTR: Methyltransferase FkbM; TIGRFAM: Methyltransferase FkbM YP_004655760.1 PFAM: Met-10+ like-protein; TIGRFAM: methyltransferase, FkbM family; KEGG: sli:Slin_6059 hypothetical protein; SPTR: uncharacterized protein YP_004655761.1 InterPro IPR004155:IPR000357:IPR010496; KEGG: dfe:Dfer_2976 protein of unknown function DUF1080; PFAM: Protein of unknown function DUF1080; HEAT; PBS lyase HEAT-like repeat; SPTR: uncharacterized protein YP_004655762.1 PFAM: Domain of Unknown Function (DUF1080); HEAT repeat; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: dfe:Dfer_2975 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004655763.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013342; KEGG: dfe:Dfer_3890 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; SPTR: Mandelate racemase/muconate lactonizing protein YP_004655764.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; KEGG: dfe:Dfer_3621 hypothetical protein; SPTR: uncharacterized protein YP_004655765.1 KEGG: dfe:Dfer_3620 hypothetical protein; SPTR: uncharacterized protein YP_004655766.1 COGs: COG0061 sugar kinase; HAMAP: inorganic polyphosphate/ATP-NAD kinase; InterPro IPR002504; KEGG: sli:Slin_0658 ATP-NAD/AcoX kinase; PFAM: ATP-NAD/AcoX kinase; SPTR: Probable inorganic polyphosphate/ATP-NAD kinase YP_004655767.1 PFAM: ATP-NAD kinase; InterPro IPR000644; KEGG: dfe:Dfer_3892 CBS domain containing protein; PFAM: Cystathionine beta-synthase, core; SPTR: CBS domain containing protein YP_004655768.1 PFAM: CBS domain; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: dfe:Dfer_3868 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein YP_004655769.1 PFAM: OmpA family; COGs: COG4974 Site-specific recombinase XerD; HAMAP: Tyrosine recombinase xerC; InterPro IPR004107:IPR002104; KEGG: sli:Slin_0098 integrase; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Tyrosine recombinase xerC 1 YP_004655770.1 PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase; InterPro IPR010496; KEGG: sli:Slin_4651 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein YP_004655771.1 PFAM: Domain of Unknown Function (DUF1080); COGs: COG2152 glycosylase; InterPro IPR007184; KEGG: sli:Slin_3919 glycosidase PH1107-related protein; PFAM: Glycosidase, PH1107-related; SPTR: Glycosidase PH1107-related protein YP_004655772.1 PFAM: Domain of unknown function (DUF377); COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: sli:Slin_5156 ROK family protein; PFAM: ROK; PRIAM: Glucokinase; SPTR: ROK family protein YP_004655773.1 PFAM: ROK family; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: dfe:Dfer_3961 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR YP_004655774.1 PFAM: short chain dehydrogenase; COGs: COG0344 membrane protein; HAMAP: Protein of unknown function DUF205; InterPro IPR020788:IPR003811; KEGG: dfe:Dfer_3740 acyl-phosphate glycerol-3-phosphate acyltransferase; PFAM: Protein of unknown function DUF205; SPTR: Glycerol-3-phosphate acyltransferase; TIGRFAM: Membrane protein YgiH YP_004655775.1 PFAM: Domain of unknown function (DUF205); TIGRFAM: acyl-phosphate glycerol 3-phosphate acyltransferase; InterPro IPR002610; KEGG: dfe:Dfer_3557 rhomboid family protein; PFAM: Peptidase S54, rhomboid; SPTR: Rhomboid family protein YP_004655776.1 PFAM: Rhomboid family; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: dfe:Dfer_3397 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28 YP_004655777.1 PFAM: PA domain; Peptidase M28; COGs: COG2030 Acyl dehydratase; InterPro IPR002539; KEGG: sli:Slin_5640 enoyl-CoA hydratase; PFAM: MaoC-like dehydratase; PRIAM: Enoyl-CoA hydratase; SPTR: Enoyl-CoA hydratase YP_004655778.1 PFAM: MaoC like domain; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_0401 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004655779.1 PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: sli:Slin_5641 butyryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Butyryl-CoA dehydrogenase YP_004655780.1 PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain YP_004655781.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: dfe:Dfer_3823 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004655782.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: phe:Phep_0201 hypothetical protein; SPTR: Membrane or secreted protein YP_004655783.1 COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase; InterPro IPR005863:IPR000713:IPR013221:IPR004101; KEGG: dfe:Dfer_4530 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a lanineligase; SPTR:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-al anineligase; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase YP_004655784.1 PFAM: Mur ligase, glutamate ligase domain; Mur ligase, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; COGs: COG4289 conserved hypothetical protein; InterPro IPR016624; KEGG: bsa:Bacsa_1607 glycosyl hydrolase 88; PFAM: Uncharacterised conserved protein UCP014753; SPTR: uncharacterized protein YP_004655785.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2264); COGs: COG2706 3-carboxymuconate cyclase; InterPro IPR019405; KEGG: cpi:Cpin_0750 6-phosphogluconolactonase; PFAM: Domain of unknown function DUF2394; PRIAM: 6-phosphogluconolactonase; SPTR: 6-phosphogluconolactonase YP_004655786.1 PFAM: 3-carboxy-cis,cis-muconate lactonizing enzyme; InterPro IPR011644; KEGG: sli:Slin_6271 heme NO binding domain protein; PFAM: Haem NO binding; SPTR: Heme NO binding domain protein YP_004655787.1 PFAM: Heme NO binding; COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 001789:IPR013655:IPR013767:IPR008207; KEGG: sli:Slin_6270 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-3; PAS fold; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif; Signal transduction response regulator, receiver region; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS YP_004655788.1 PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG3717 5-keto 4-deoxyuronate isomerase; HAMAP: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; InterPro IPR007045; KEGG: dfe:Dfer_2839 5-keto-4-deoxyuronate isomerase; PFAM: 5-keto 4-deoxyuronate isomerase; PRIAM: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; SPTR: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase YP_004655789.1 PFAM: KduI/IolB family; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: cpi:Cpin_6825 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 2-deoxy-D-gluconate 3-dehydrogenase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004655790.1 PFAM: short chain dehydrogenase; TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase YP_004655791.1 COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: dfe:Dfer_2837 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family YP_004655792.1 PFAM: Bacterial regulatory proteins, lacI family; family; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: cpi:Cpin_1037 cell wall hydrolase/autolysin; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; SPTR: Cell wall hydrolase/autolysin YP_004655793.1 PFAM: N-acetylmuramoyl-L-alanine amidase; Localisation of periplasmic protein complexes; KEGG: lby:Lbys_3570 hypothetical protein; SPTR: uncharacterized protein YP_004655795.1 COGs: COG5434 Endopygalactorunase; InterPro IPR006626:IPR001087:IPR000743; KEGG: lby:Lbys_1641 glycoside hydrolase 28; PFAM: Glycoside hydrolase, family 28; Lipase, GDSL; PRIAM: Exo-poly-alpha-galacturonosidase; SPTR: Glycoside hydrolase 28 YP_004655796.1 PFAM: Glycosyl hydrolases family 28; GDSL-like Lipase/Acylhydrolase; KEGG: sli:Slin_3865 hypothetical protein; SPTR: uncharacterized protein YP_004655797.1 InterPro IPR013517; KEGG: fjo:Fjoh_5055 hypothetical protein; PFAM: FG-GAP; SPTR: Hypothetical lipoprotein YP_004655798.1 PFAM: FG-GAP repeat; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: chu:CHU_1932 outer membrane protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: Possible outer membrane protein YP_004655799.1 PFAM: OmpA family; KEGG: dfe:Dfer_3562 hypothetical protein; SPTR: uncharacterized protein YP_004655800.1 KEGG: cat:CA2559_05520 hypothetical protein; SPTR: uncharacterized protein YP_004655802.1 KEGG: ppn:Palpr_1196 hypothetical protein; SPTR: uncharacterized protein YP_004655803.1 COGs: COG3920 Signal transduction histidine kinase; InterPro IPR011495:IPR003594; KEGG: gfo:GFO_2643 two-component system sensor histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor region; ATP-binding region, ATPase-like; SPTR: Signal transduction histidine kinase YP_004655804.1 PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789; KEGG: dfe:Dfer_1630 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004655805.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090:IPR002655; KEGG: cao:Celal_2067 acyl-CoA oxidase; PFAM: Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase, C-terminal; PRIAM: Acyl-CoA oxidase; SPTR: Acyl-CoA oxidase YP_004655806.1 PFAM: Acyl-CoA oxidase; Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: sli:Slin_1486 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family YP_004655807.1 PFAM: GDSL-like Lipase/Acylhydrolase; InterPro IPR014968; KEGG: cyn:Cyan7425_3080 XisI protein; PFAM: XisI protein; SPTR: uncharacterized protein YP_004655808.1 PFAM: XisI protein; InterPro IPR014919; KEGG: mar:MAE_16020 FdxN element excision controlling factor protein; PFAM: XisH protein; SPTR: FdxN element excision controlling factor protein YP_004655809.1 PFAM: XisH protein; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_2514 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; manually curated YP_004655810.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; KEGG: cao:Celal_2018 hypothetical protein; SPTR: Cytochrome c YP_004655811.1 COGs: COG5520 O-Glycosyl hydrolase; InterPro IPR001139; KEGG: psn:Pedsa_3076 glucan endo-1,6-beta-glucosidase; PFAM: Glycoside hydrolase, family 30; PRIAM: Glucan endo-1,6-beta-glucosidase; SPTR: Glucan endo-1,6-beta-glucosidase YP_004655812.1 PFAM: O-Glycosyl hydrolase 30; KEGG: asa:ASA_0853 hypothetical protein; SPTR: uncharacterized protein YP_004655813.1 COGs: COG3538 conserved hypothetical protein; InterPro IPR006311:IPR008313; KEGG: dfe:Dfer_4291 hypothetical protein; PFAM: Uncharacterised conserved protein UCP028846; SPTR: uncharacterized protein YP_004655814.1 PFAM: Protein of unknown function (DUF1237); COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933; KEGG: sli:Slin_1127 alpha-L-fucosidase; PFAM: Glycoside hydrolase, family 29; SMART: Glycoside hydrolase, family 29; SPTR: Alpha-L-fucosidase YP_004655815.1 PFAM: Alpha-L-fucosidase; COGs: COG1446 Asparaginase; InterPro IPR000246; KEGG: lby:Lbys_1666 asparaginase; PFAM: Peptidase T2, asparaginase 2; PRIAM:N(4)-(beta-N-acetylglucosaminyl)-L-asparagina se; SPTR: Asparaginase YP_004655816.1 PFAM: Asparaginase; COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933; KEGG: lby:Lbys_1665 glycoside hydrolase 29 (alpha-L-fucosidase); PFAM: Glycoside hydrolase, family 29; SMART: Glycoside hydrolase, family 29; SPTR: Glycoside hydrolase 29 (Alpha-L-fucosidase) YP_004655817.1 PFAM: Alpha-L-fucosidase; COGs: COG1858 Cytochrome c peroxidase; InterPro IPR004852; KEGG: hoh:Hoch_3035 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; SPTR: Probable Cytochrome-c peroxidase YP_004655818.1 PFAM: Cytochrome c; Di-haem cytochrome c peroxidase; KEGG: sli:Slin_6343 hypothetical protein; SPTR: uncharacterized protein YP_004655819.1 InterPro IPR001087; KEGG: sli:Slin_3977 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family YP_004655820.1 PFAM: GDSL-like Lipase/Acylhydrolase; COGs: COG3325 Chitinase; InterPro IPR011583:IPR001223; KEGG: lby:Lbys_2911 glycoside hydrolase 18; PFAM: Glycoside hydrolase, family 18, catalytic domain; SMART: Chitinase II; SPTR: Glycoside hydrolase 18 YP_004655821.1 PFAM: Glycosyl hydrolases family 18; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: dfe:Dfer_2787 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein YP_004655822.1 COGs: COG0679 permease; InterPro IPR004776; KEGG: bmd:BMD_1912 auxin efflux carrier (AEC) family transporter; PFAM: Auxin efflux carrier; SPTR: Transporter, auxin efflux carrier (AEC) family protein YP_004655823.1 PFAM: Membrane transport protein; InterPro IPR013096; KEGG: cpi:Cpin_7186 cupin; PFAM: Cupin 2, conserved barrel; SPTR: Cupin 2 conserved barrel domain protein YP_004655824.1 PFAM: Cupin domain; COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: dfe:Dfer_2841 glycosyl hydrolase 88; PFAM: Glycosyl hydrolase, family 88; SPTR: Glycosyl hydrolase 88 YP_004655825.1 PFAM: Glycosyl Hydrolase 88; COGs: COG0246 Mannitol-1-phosphate/altronate dehydrogenase; InterPro IPR013131:IPR013118; KEGG: sli:Slin_1247 mannitol dehydrogenase domain protein; PFAM: Mannitol dehydrogenase, C-terminal; Mannitol dehydrogenase, N-terminal; PRIAM: Tagaturonate reductase; SPTR: Mannitol dehydrogenase domain protein YP_004655826.1 PFAM: Mannitol dehydrogenase C-terminal domain; Mannitol dehydrogenase Rossmann domain; COGs: COG1904 Glucuronate isomerase; HAMAP: Uronate isomerase; InterPro IPR003766; KEGG: lby:Lbys_1618 D-glucuronate isomerase; PFAM: Uronate isomerase; PRIAM: Glucuronate isomerase; SPTR: Uronate isomerase YP_004655827.1 PFAM: Glucuronate isomerase; COGs: COG0524 Sugar kinase ribokinase; InterPro IPR011611; KEGG: sli:Slin_1246 PfkB domain protein; PFAM: Carbohydrate/purine kinase; SPTR: PfkB domain protein YP_004655828.1 PFAM: pfkB family carbohydrate kinase; COGs: COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; InterPro IPR000887; KEGG: sli:Slin_1245 KDPG and KHG aldolase; PFAM: KDPG/KHG aldolase; SPTR: KDPG and KHG aldolase; TIGRFAM: KDPG/KHG aldolase YP_004655829.1 PFAM: KDPG and KHG aldolase; TIGRFAM: Entner-Doudoroff aldolase; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: phe:Phep_1023 major facilitator superfamily protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004655830.1 PFAM: Major Facilitator Superfamily; KEGG: sli:Slin_0455 hypothetical protein; SPTR: uncharacterized protein YP_004655831.1 PFAM: Calcium/calmodulin dependent protein kinase II Association; COGs: COG0126 3-phosphoglycerate kinase; HAMAP: Phosphoglycerate kinase; InterPro IPR001576; KEGG: lby:Lbys_3021 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; PRIAM: Phosphoglycerate kinase; SPTR: Phosphoglycerate kinase YP_004655832.1 PFAM: Phosphoglycerate kinase; KEGG: dfe:Dfer_3393 hypothetical protein; SPTR: uncharacterized protein YP_004655833.1 COGs: COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); HAMAP: NAD(P)H-quinone oxidoreductase subunit 2; InterPro IPR001750; KEGG: dfe:Dfer_3394 proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit N 1 YP_004655834.1 PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; COGs: COG3158 K+ transporter; HAMAP: Low affinity potassium transport system protein kup; InterPro IPR003855; KEGG: dfe:Dfer_3443 K potassium transporter; PFAM: K+ potassium transporter; SPTR: Probable potassium transport system protein kup 1 YP_004655835.1 PFAM: K+ potassium transporter; COGs: COG3158 K+ transporter; HAMAP: Low affinity potassium transport system protein kup; InterPro IPR003855; KEGG: sli:Slin_2974 K potassium transporter; PFAM: K+ potassium transporter; SPTR: Probable potassium transport system protein kup 2 YP_004655836.1 PFAM: K+ potassium transporter; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_4399 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: CDP-paratose 2-epimerase; SPTR: NAD-dependent epimerase/dehydratase YP_004655837.1 PFAM: NAD dependent epimerase/dehydratase; COGs: COG3717 5-keto 4-deoxyuronate isomerase; HAMAP: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; InterPro IPR007045; KEGG: bse:Bsel_0460 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; PFAM: 5-keto 4-deoxyuronate isomerase; PRIAM: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; SPTR: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase YP_004655838.1 PFAM: KduI/IolB family; InterPro IPR003489; KEGG: dfe:Dfer_3255 sigma 54 modulation protein/ribosomal protein S30EA; SPTR: sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein YP_004655839.1 PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein; COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: sli:Slin_5309 amidohydrolase; PFAM: Amidohydrolase 1; SPTR: Amidohydrolase YP_004655840.1 PFAM: Amidohydrolase; COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain; InterPro IPR004529:IPR004188:IPR002319; KEGG: dfe:Dfer_4769 phenylalanyl-tRNA synthetase, alpha subunit; PFAM: Phenylalanyl-tRNA synthetase alpha chain; Phenylalanyl-tRNA synthetase, class II, N-terminal; SPTR: Phenylalanyl-tRNA synthetase alpha chain; TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit YP_004655841.1 PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; KEGG: dfe:Dfer_4561 hypothetical protein; SPTR: uncharacterized protein YP_004655842.1 COGs: COG0404 Glycine cleavage system T protein (aminomethyltransferase); HAMAP: Aminomethyltransferase; InterPro IPR006223:IPR006222:IPR013977; KEGG: dfe:Dfer_4550 glycine cleavage system aminomethyltransferase T; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel; PRIAM: Aminomethyltransferase; SPTR: Aminomethyltransferase; TIGRFAM: Glycine cleavage system T protein YP_004655843.1 PFAM: Aminomethyltransferase folate-binding domain; Glycine cleavage T-protein C-terminal barrel domain; TIGRFAM: glycine cleavage system T protein; COGs: COG2045 Phosphosulfolactate phosphohydrolase; InterPro IPR005238; KEGG: dfe:Dfer_4549 2-phosphosulfolactate phosphatase; PFAM: 2-phosphosulpholactate phosphatase; SPTR: Probable 2-phosphosulfolactate phosphatase YP_004655844.1 PFAM: 2-phosphosulpholactate phosphatase; COGs: COG0107 Imidazoleglycerol-phosphate synthase; HAMAP: Imidazole glycerol phosphate synthase subunit hisF; InterPro IPR004651:IPR006062; KEGG: dfe:Dfer_4239 imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: Histidine biosynthesis; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR: Imidazole glycerol phosphate synthase subunit hisF; TIGRFAM: Histidine biosynthesis, HisF YP_004655845.1 PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: psn:Pedsa_2901 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004655846.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: phe:Phep_0216 histidine kinase internal subunit; PFAM: Signal transduction histidine kinase, internal region; SPTR: transmembrane protein YP_004655847.1 PFAM: Histidine kinase; COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: sli:Slin_0366 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YceI family protein YP_004655848.1 PFAM: YceI-like domain; KEGG: dfe:Dfer_4741 beta-lactamase domain protein; SPTR: Beta-lactamase domain protein YP_004655849.1 PFAM: Metallo-beta-lactamase superfamily; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: syn:sll0740 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: Sll0740 protein YP_004655850.1 PFAM: Protein of unknown function (DUF820); COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: lby:Lbys_1108 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family YP_004655851.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0339 Zn-dependent oligopeptidase; InterPro IPR001567; KEGG: sli:Slin_1858 oligopeptidase A; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; PRIAM: Peptidyl-dipeptidase Dcp; SPTR: Oligopeptidase A YP_004655852.1 PFAM: Peptidase M3; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: cyn:Cyan7425_3410 type 11 methyltransferase; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11 YP_004655853.1 PFAM: Methyltransferase domain; Prodigal; manually curated YP_004655855.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: pdi:BDI_2642 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: Sigma-70 region 2 subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004655856.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: lby:Lbys_2521 membrane protein; SPTR: uncharacterized protein YP_004655857.1 COGs: COG0366 Glycosidase; InterPro IPR006589:IPR006047; KEGG: sli:Slin_4658 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; SPTR: Alpha amylase catalytic region YP_004655858.1 PFAM: Alpha amylase, catalytic domain; Domain of unknown function (DUF3416); InterPro IPR001387; KEGG: sli:Slin_1142 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family YP_004655859.1 PFAM: Helix-turn-helix YP_004655860.1 COGs: COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); HAMAP: NAD(P)H-quinone oxidoreductase subunit 2; InterPro IPR010096:IPR001750; KEGG: sli:Slin_5946 proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit N 1; TIGRFAM: NADH-quinone oxidoreductase, chain N YP_004655861.1 PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); InterPro IPR010227:IPR001750; KEGG: dfe:Dfer_3897 proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: Proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: NADH-quinone oxidoreductase, chain M YP_004655862.1 PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR003945:IPR001516:IPR001750; KEGG: dfe:Dfer_3898 proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; PRIAM: NADH dehydrogenase (quinone); SPTR: Proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5 YP_004655863.1 PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5 C-terminus; NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; COGs: COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); HAMAP: NAD(P)H-quinone oxidoreductase subunit 4L; InterPro IPR001133; KEGG: dfe:Dfer_3899 NADH-ubiquinone oxidoreductase chain 4L; PFAM: NADH:ubiquinone/quinone oxidoreductase, chain 4L; SPTR: NADH-quinone oxidoreductase subunit K 1 YP_004655864.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; COGs: COG0728 membrane protein virulence factor; InterPro IPR004268; KEGG: fnu:FN0709 virulence factor MviN; PFAM: Flagellin assembly, membrane protein MviN; SPTR: Virulence factor mviN YP_004655865.1 PFAM: MviN-like protein; KEGG: dfe:Dfer_5102 hypothetical protein; SPTR: uncharacterized protein YP_004655867.1 COGs: COG1778 Low specificity phosphatase (HAD superfamily); InterPro IPR010023:IPR006549:IPR005834; KEGG: ppn:Palpr_1685 2-dehydrO-3-deoxyphosphooctonate aldolase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: Phosphatase KdsC; HAD-superfamily hydrolase, subfamily IIIA YP_004655868.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; HAD-superfamily hydrolase, subfamily IIIA; KEGG: dfe:Dfer_5102 hypothetical protein; SPTR: uncharacterized protein YP_004655869.1 COGs: COG1083 CMP-N-acetylneuraminic acid synthetase; InterPro IPR003329; KEGG: atm:ANT_06460 N-acylneuraminate cytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase; PRIAM: N-acylneuraminate cytidylyltransferase; SPTR: N-acylneuraminate cytidylyltransferase YP_004655870.1 PFAM: Cytidylyltransferase; COGs: COG2089 Sialic acid synthase; InterPro IPR013132; KEGG: cat:CA2559_07305 N-acetylneuraminic acid phosphate synthase; PFAM: N-acetylneuraminic acid synthase, N-terminal; PRIAM: N-acetylneuraminate synthase; SPTR: N-acetylneuraminic acid phosphate synthase YP_004655871.1 PFAM: NeuB family; COGs: COG0276 Protoheme ferro-lyase (ferrochelatase); HAMAP: Ferrochelatase; InterPro IPR001015; KEGG: sli:Slin_0649 ferrochelatase; PFAM: Ferrochelatase; PRIAM: Ferrochelatase; SPTR: Ferrochelatase; TIGRFAM: Ferrochelatase YP_004655872.1 PFAM: Ferrochelatase; TIGRFAM: ferrochelatase; COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); HAMAP: Glutamyl-tRNA(Gln) amidotransferase, B subunit; InterPro IPR004413:IPR006075:IPR006107:IPR018027; KEGG: dfe:Dfer_3611 aspartyl/glutamyl-tRNA amidotransferase subunit B; PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, central region; Asn/Gln amidotransferase; SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit YP_004655873.1 PFAM: GatB/GatE catalytic domain; GatB domain; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit YP_004655874.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: sli:Slin_5112 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase domain protein YP_004655875.1 PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; KEGG: sli:Slin_4550 TonB-dependent receptor plug; SPTR: TonB-dependent receptor plug YP_004655876.1 COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; InterPro IPR004607:IPR002376; KEGG: sli:Slin_4818 phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal; PRIAM: Phosphoribosylglycinamide formyltransferase; SPTR: Phosphoribosylglycinamide formyltransferase; TIGRFAM: Phosphoribosylglycinamide formyltransferase YP_004655877.1 PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; KEGG: sli:Slin_5553 hypothetical protein; SPTR: uncharacterized protein YP_004655879.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR000073; KEGG: mma:MM_3198 hypothetical protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: uncharacterized protein YP_004655880.1 PFAM: X-Pro dipeptidyl-peptidase (S15 family); COGs: COG1280 threonine efflux protein; InterPro IPR001123; KEGG: dfe:Dfer_0472 lysine exporter protein (LysE/YggA); PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: Lysine exporter protein (LYSE/YGGA) YP_004655881.1 PFAM: LysE type translocator; InterPro IPR000086; KEGG: dfe:Dfer_0471 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase YP_004655882.1 PFAM: NUDIX domain; COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: sli:Slin_1661 cation diffusion facilitator family transporter; PFAM: Cation efflux protein; SPTR: Cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein YP_004655883.1 PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter; COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; InterPro IPR000583; KEGG: sli:Slin_5971 amidophosphoribosyltransferase; PFAM: Glutamine amidotransferase, class-II; PRIAM: Amidophosphoribosyltransferase; SPTR: Amidophosphoribosyltransferase YP_004655884.1 PFAM: Glutamine amidotransferases class-II; Prodigal; manually curated YP_004655885.1 KEGG: sli:Slin_3426 hypothetical protein; SPTR: PKD domain protein YP_004655887.1 KEGG: lby:Lbys_0531 peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: Peptidase S8 and S53 subtilisin kexin sedolisin YP_004655889.1 KEGG: rbi:RB2501_15219 DNA-binding protein YP_004655890.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR006311:IPR012307; KEGG: sli:Slin_4026 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004655891.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: dfe:Dfer_5546 hypothetical protein; SPTR: uncharacterized protein YP_004655892.1 COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: phe:Phep_0589 histidine kinase internal subunit; PFAM: Signal transduction histidine kinase, internal region; SPTR: Histidine kinase internal region YP_004655893.1 PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: phe:Phep_0588 response regulator receiver; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two-component response regulator YP_004655894.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; InterPro IPR003838; KEGG: zpr:ZPR_4635 transporter permease; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: transporter permease YP_004655895.1 PFAM: Predicted permease; InterPro IPR005149; KEGG: sli:Slin_0940 PadR family transcriptional regulator; PFAM: Transcriptional regulator PadR N-terminal-like; SPTR: Transcriptional regulator, PadR-like family YP_004655896.1 PFAM: Transcriptional regulator PadR-like family; InterPro IPR011701; KEGG: sli:Slin_3632 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004655897.1 PFAM: Major Facilitator Superfamily; InterPro IPR011701; KEGG: sli:Slin_3633 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004655898.1 PFAM: Major Facilitator Superfamily; KEGG: sli:Slin_5605 hypothetical protein; SPTR: uncharacterized protein YP_004655899.1 KEGG: sli:Slin_5604 hypothetical protein; SPTR: uncharacterized protein YP_004655900.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_5603 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70 YP_004655901.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR004488:IPR002523; KEGG: dfe:Dfer_3288 magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like; SPTR: Magnesium and cobalt transport protein CorA; TIGRFAM: Magnesium/cobalt transport protein CorA YP_004655902.1 PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA); InterPro IPR005632; KEGG: dfe:Dfer_4390 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH) YP_004655903.1 PFAM: Outer membrane protein (OmpH-like); COGs: COG2825 Outer membrane protein; InterPro IPR005632; KEGG: dfe:Dfer_4389 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH) YP_004655904.1 PFAM: Outer membrane protein (OmpH-like); COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR016474:IPR010827:IPR000184; KEGG: dfe:Dfer_4388 outer membrane protein assembly complex, YaeT protein; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Outer membrane protein assembly complex, YaeT protein; TIGRFAM: Outer membrane assembly protein, YaeT YP_004655905.1 PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein; COGs: COG0020 Undecaprenyl pyrophosphate synthase; HAMAP: Undecaprenyl pyrophosphate synthase; InterPro IPR001441; KEGG: dfe:Dfer_4387 undecaprenyl diphosphate synthase; PFAM:Di-trans-poly-cis-decaprenylcistransferase-lik e; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; SPTR: Undecaprenyl diphosphate synthase; TIGRFAM:Di-trans-poly-cis-decaprenylcistransferase- like YP_004655906.1 PFAM: undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: sli:Slin_6251 MATE efflux family protein; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein MatE YP_004655907.1 PFAM: MatE; TIGRFAM: efflux protein, MATE family; COGs: COG2319 FOG: WD40 repeat; InterPro IPR001680:IPR019781; KEGG: sli:Slin_5836 hypothetical protein; PFAM: WD40 repeat, subgroup; SMART: WD40 repeat; SPTR: WD40 repeat, subgroup YP_004655908.1 PFAM: WD domain, G-beta repeat; InterPro IPR008278; KEGG: dfe:Dfer_2892 4'-phosphopantetheinyl transferase; PFAM: 4'-phosphopantetheinyl transferase; SPTR: 4'-phosphopantetheinyl transferase YP_004655909.1 PFAM: 4'-phosphopantetheinyl transferase superfamily; COGs: COG2912 conserved hypothetical protein; KEGG: sli:Slin_5838 hypothetical protein; SPTR: uncharacterized protein YP_004655910.1 COGs: COG1087 UDP-glucose 4-epimerase; InterPro IPR005886:IPR001509; KEGG: dfe:Dfer_2894 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucose 4-epimerase; SPTR: UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase YP_004655911.1 PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: UDP-glucose-4-epimerase; COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR005888:IPR001509; KEGG: lby:Lbys_1313 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: dTDP-glucose 4,6-dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase YP_004655912.1 PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; InterPro IPR001434:IPR008454; KEGG: hau:Haur_1649 Cna B domain-containing protein; PFAM: Collagen-binding surface protein Cna-like, B region; Protein of unknown function DUF11; SPTR: Cna B domain protein; TIGRFAM: Protein of unknown function DUF11 YP_004655913.1 PFAM: Domain of unknown function DUF11; Cna protein B-type domain; TIGRFAM: conserved repeat domain YP_004655914.1 COGs: COG1560 Lauroyl/myristoyl acyltransferase; KEGG: sli:Slin_5978 hypothetical protein; SPTR: uncharacterized protein YP_004655915.1 PFAM: Bacterial lipid A biosynthesis acyltransferase YP_004655916.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: sli:Slin_5976 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: Response regulator receiver protein YP_004655917.1 PFAM: LytTr DNA-binding domain; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792; KEGG: sli:Slin_5975 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: Two component transcriptional regulator, LuxR family YP_004655918.1 PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; COGs: COG0105 Nucleoside diphosphate kinase; HAMAP: Nucleoside diphosphate kinase; InterPro IPR001564; KEGG: sli:Slin_6029 nucleoside-diphosphate kinase; PFAM: Nucleoside diphosphate kinase, core; PRIAM: Nucleoside-diphosphate kinase; SMART: Nucleoside diphosphate kinase, core; SPTR: Nucleoside-diphosphate kinase YP_004655919.1 PFAM: Nucleoside diphosphate kinase; COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667:IPR003156; KEGG: dfe:Dfer_4381 phosphoesterase RecJ domain protein; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; SPTR: Phosphoesterase RecJ domain protein YP_004655920.1 PFAM: DHH family; DHHA1 domain; COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: sli:Slin_6027 peptidylprolyl isomerase FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; PRIAM: Peptidylprolyl isomerase; SPTR: Peptidyl-prolyl cis-trans isomerase YP_004655921.1 PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: sli:Slin_4431 peptidylprolyl isomerase FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase YP_004655922.1 PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; COGs: COG0127 Xanthosine triphosphate pyrophosphatase; HAMAP: Nucleoside-triphosphatase rdgB; InterPro IPR002637; KEGG: sli:Slin_6026 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; PFAM: Ham1-like protein; PRIAM: Nucleoside-triphosphatase; SPTR: Nucleoside-triphosphatase; TIGRFAM: Ham1-like protein YP_004655923.1 PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; COGs: COG3975 protease with the C-terminal PDZ domain; InterPro IPR007963; KEGG: dfe:Dfer_4157 peptidase M61 domain protein; PFAM: Peptidase M61; SPTR: Peptidase M61 domain protein YP_004655924.1 PFAM: M61 glycyl aminopeptidase; InterPro IPR019933:IPR007793; KEGG: sli:Slin_5835 DivIVA domain protein; PFAM: DivIVA; SPTR: DivIVA domain protein; TIGRFAM: DivIVA domain YP_004655925.1 PFAM: DivIVA protein; TIGRFAM: DivIVA domain; COGs: COG1539 Dihydroneopterin aldolase; InterPro IPR006157:IPR006156; KEGG: dfe:Dfer_2889 dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; SPTR: Dihydroneopterin aldolase; TIGRFAM: Dihydroneopterin aldolase subgroup; Dihydroneopterin aldolase YP_004655926.1 PFAM: Dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; FolB domain; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: lby:Lbys_0664 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004655927.1 PFAM: Oxidoreductase, C-terminal alpha/beta domain; Oxidoreductase, NAD-binding Rossmann fold; COGs: COG2173 D-alanyl-D-alanine dipeptidase; InterPro IPR000755; KEGG: sli:Slin_4461 peptidase M15D VanX D-ala-D-ala dipeptidase; PFAM: Peptidase M15D, vanX D-ala-D-ala dipeptidase; SPTR: Peptidase M15D vanX D-ala-D-ala dipeptidase YP_004655928.1 PFAM: D-ala-D-ala dipeptidase; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827; KEGG: dfe:Dfer_3223 surface antigen variable number repeat protein; PFAM: Surface antigen variable number; SPTR: Surface antigen variable number repeat protein YP_004655929.1 PFAM: Surface antigen variable number repeat; Surface antigen; KEGG: dfe:Dfer_3224 hypothetical protein; SPTR: uncharacterized protein YP_004655930.1 COGs: COG1251 NAD(P)H-nitrite reductase; InterPro IPR013027; KEGG: zpr:ZPR_4195 nitrite reductase (NAD(P)H) large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Rubredoxin--NAD(+) reductase; SPTR: Pyridine nucleotide-disulphide oxidoreductase domain protein YP_004655931.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814; KEGG: dfe:Dfer_4419 aminotransferase class-III; PFAM: Aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: Aminotransferase class-III YP_004655932.1 PFAM: Aminotransferase class-III; COGs: COG1524 Uncharacterized protein of the AP superfamily; InterPro IPR002591; KEGG: dfe:Dfer_2886 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase YP_004655933.1 PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase; KEGG: dfe:Dfer_2885 hypothetical protein; SPTR: uncharacterized protein YP_004655934.1 COGs: COG0337 3-dehydroquinate synthetase; InterPro IPR002658; KEGG: dfe:Dfer_2884 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase AroB; PRIAM: 3-dehydroquinate synthase; SPTR: 3-dehydroquinate synthase YP_004655935.1 PFAM: 3-dehydroquinate synthase; COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537; KEGG: dfe:Dfer_2883 UbiA prenyltransferase; PFAM: UbiA prenyltransferase; SPTR: UbiA prenyltransferase YP_004655936.1 PFAM: UbiA prenyltransferase; COGs: COG1099 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR001130; KEGG: dfe:Dfer_2882 TatD-related deoxyribonuclease; PFAM: Deoxyribonuclease, TatD-related; SPTR: TatD-related deoxyribonuclease YP_004655937.1 PFAM: TatD related DNase; KEGG: dfe:Dfer_2881 hypothetical protein; SPTR: uncharacterized protein YP_004655938.1 COGs: COG0315 Molybdenum cofactor biosynthesis enzyme; InterPro IPR002820; KEGG: sli:Slin_2809 molybdenum cofactor biosynthesis protein C; PFAM: Molybdopterin cofactor biosynthesis MoaC region; SPTR: Molybdenum cofactor biosynthesis protein C; TIGRFAM: Molybdopterin cofactor biosynthesis MoaC region YP_004655939.1 PFAM: MoaC family; TIGRFAM: molybdenum cofactor biosynthesis protein MoaC; KEGG: sli:Slin_3341 hypothetical protein; SPTR: uncharacterized protein YP_004655940.1 KEGG: sli:Slin_4633 transmembrane anti-sigma factor; SPTR: transmembrane anti-sigma factor YP_004655941.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_1125 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004655942.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG4115 conserved hypothetical protein; InterPro IPR009614; KEGG: cyt:cce_1706 addiction module toxin, Txe/YoeB; PFAM: Addiction module toxin, Txe/YoeB; SPTR: Genome sequencing data, contig C327; TIGRFAM: Addiction module toxin, Txe/YoeB YP_004655943.1 PFAM: Plasmid encoded toxin Txe; TIGRFAM: toxin-antitoxin system, toxin component, Txe/YoeB family YP_004655944.1 COGs: COG0078 Ornithine carbamoyltransferase; InterPro IPR006132:IPR006131; KEGG: dfe:Dfer_4418 aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; PRIAM: N-acetylornithine carbamoyltransferase; SPTR: Aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain YP_004655945.1 PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; COGs: COG0386 Glutathione peroxidase; InterPro IPR000889; KEGG: dfe:Dfer_2679 glutathione peroxidase; PFAM: Glutathione peroxidase; SPTR: Glutathione peroxidase YP_004655946.1 PFAM: Glutathione peroxidase; InterPro IPR000620; KEGG: dfe:Dfer_2483 membrane protein containing DUF6; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: Membrane protein containing DUF6 YP_004655947.1 PFAM: EamA-like transporter family; COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: sli:Slin_5951 peptidase M16 domain protein; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: Peptidase M16 domain protein YP_004655948.1 PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16); COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: dfe:Dfer_3628 peptidylprolyl isomerase FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase YP_004655949.1 PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; COGs: COG0579 dehydrogenase; InterPro IPR006076; KEGG: sli:Slin_5628 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase YP_004655950.1 PFAM: FAD dependent oxidoreductase; COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: bur:Bcep18194_A3978 acetyltransferase; SPTR: uncharacterized protein YP_004655951.1 PFAM: Bacterial transferase hexapeptide (three repeats); Prodigal; manually curated YP_004655952.1 COGs: COG4152 ABC-type uncharacterized transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: sli:Slin_1739 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein YP_004655953.1 PFAM: ABC transporter; manually curated YP_004655954.1 KEGG: dfe:Dfer_0080 cytochrome c-related protein; SPTR: Cytochrome c-related protein YP_004655955.1 PFAM: Cytochrome c; KEGG: sli:Slin_2866 hypothetical protein; SPTR: uncharacterized protein YP_004655956.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR011659:IPR001375; KEGG: sli:Slin_3267 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein YP_004655957.1 PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region; WD40-like Beta Propeller Repeat; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: dfe:Dfer_4672 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; SPTR: Aldehyde Dehydrogenase YP_004655958.1 PFAM: Aldehyde dehydrogenase; COGs: COG0518 GMP synthase - Glutamine amidotransferase domain; InterPro IPR000991; KEGG: dfe:Dfer_4674 amidotransferase, PFAM: Glutamine amidotransferase class-I, C-terminal; SPTR: Amidotransferase YP_004655959.1 PFAM: Glutamine amidotransferase class-I YP_004655960.1 InterPro IPR010496; KEGG: fbc:FB2170_08039 multi-domain-containing protein; PFAM: Protein of unknown function DUF1080; SPTR: multi-domain protein YP_004655961.1 PFAM: Domain of Unknown Function (DUF1080); KEGG: sus:Acid_3659 hypothetical protein; SPTR: uncharacterized protein YP_004655962.1 InterPro IPR019115; KEGG: dfe:Dfer_2378 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: uncharacterized protein YP_004655963.1 PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; InterPro IPR000531; KEGG: sli:Slin_3443 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein YP_004655964.1 PFAM: TonB dependent receptor; Prodigal; manually curated YP_004655965.1 manually curated YP_004655966.1 COGs: COG0049 Ribosomal protein S7; InterPro IPR005717:IPR000235; KEGG: sli:Slin_4448 ribosomal protein S7; PFAM: Ribosomal protein S7; SPTR: 30S ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type; manually curated YP_004655967.1 PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle; COGs: COG0048 Ribosomal protein S12; InterPro IPR005679:IPR006032; KEGG: dfe:Dfer_4339 30S ribosomal protein S12; PFAM: Ribosomal protein S12/S23; SPTR: 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacterial-type YP_004655968.1 PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle; COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: fps:FP2000 thioredoxin family protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Thioredoxin family protein YP_004655969.1 PFAM: Rhodanese-like domain; COGs: COG0730 permease; InterPro IPR002781; KEGG: wvi:Weevi_0465 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: Membrane protein YP_004655970.1 PFAM: Sulfite exporter TauE/SafE; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: sli:Slin_0700 LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SPTR: Two component transcriptional regulator, LuxR family YP_004655971.1 PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594:IPR011712; KEGG: sli:Slin_0699 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; SMART: ATP-binding region, ATPase-like; SPTR: Histidine kinase YP_004655972.1 PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenase; InterPro IPR012748:IPR017941; KEGG: cao:Celal_1365 assimilatory nitrite reductase (nad(p)h) small subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Assimilatory nitrite reductase (NAD(P)H) small subunit; TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirD YP_004655973.1 PFAM: Rieske [2Fe-2S] domain; TIGRFAM: nitrite reductase [NAD(P)H], small subunit; COGs: COG1251 NAD(P)H-nitrite reductase; InterProIPR012744:IPR013027:IPR007419:IPR005117:IPR 006067; KEGG: chu:CHU_1332 assimilatory nitrite reductase (NAD(P)H) large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; Nitrite/sulphite reductase 4Fe-4S region; PRIAM: Nitrite reductase (NAD(P)H); SPTR: Assimilatory nitrite reductase (NAD(P)H) large subunit; TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirB YP_004655974.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; Nitrite and sulphite reductase 4Fe-4S domain; BFD-like [2Fe-2S] binding domain; Nitrite/Sulfite reductase ferredoxin-like half domain; TIGRFAM: nitrite reductase [NAD(P)H], large subunit; COGs: COG0007 Uroporphyrinogen-III methylase; InterPro IPR006366:IPR000878; KEGG: chu:CHU_2636 uroporphyrinogen-III C-methyltransferase; PFAM: Tetrapyrrole methylase; PRIAM: Uroporphyrinogen-III C-methyltransferase; SPTR: Uroporphyrinogen-III C-methyltransferase; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal YP_004655975.1 PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase; COGs: COG3458 Acetyl esterase (deacetylase); InterPro IPR008391; KEGG: dfe:Dfer_2740 acetyl xylan esterase; PFAM: Acetyl xylan esterase; SPTR: Acetyl xylan esterase YP_004655976.1 PFAM: Acetyl xylan esterase (AXE1); COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277; KEGG: tle:Tlet_1106 cystathionine gamma-synthase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; PRIAM: Cystathionine beta-lyase; SPTR: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes YP_004655977.1 PFAM: Cys/Met metabolism PLP-dependent enzyme; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: sli:Slin_2930 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SPTR: Histidine kinase YP_004655978.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: sli:Slin_2929 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family YP_004655979.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR003088:IPR005084; KEGG: dfe:Dfer_1484 PKD domain containing protein; PFAM: PKD; Cytochrome c, class I; Carbohydrate binding domain, family 6; SMART: PKD; SPTR: Transcriptional regulator, Crp/Fnr family YP_004655980.1 PFAM: Cytochrome c; PKD domain; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR006311:IPR012307; KEGG: sli:Slin_0334 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004655981.1 PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; InterPro IPR000086; KEGG: sli:Slin_0652 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: uncharacterized protein YP_004655982.1 PFAM: NUDIX domain; InterPro IPR012910:IPR000531; KEGG: sli:Slin_0274 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor YP_004655983.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_4947 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein YP_004655984.1 PFAM: SusD family; InterPro IPR013517:IPR011519; KEGG: dfe:Dfer_4948 ASPIC/UnbV domain protein; PFAM: ASPIC/UnbV; FG-GAP; SPTR: ASPIC/UnbV domain protein YP_004655985.1 PFAM: ASPIC and UnbV; FG-GAP repeat; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterProIPR005897:IPR003593:IPR005074:IPR001140:IPR 003439; KEGG: zpr:ZPR_4399 bacteriocin/lantibiotic ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Probable bacteriocin/lantibiotic ABC transporter, ATP-binding protein; TIGRFAM: Peptidase C39, ABC-type bacteriocin transporter YP_004655986.1 PFAM: Peptidase C39 family; ABC transporter transmembrane region; ABC transporter; TIGRFAM: ABC-type bacteriocin transporter; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: shg:Sph21_1896 secretion protein HlyD family protein; PFAM: Secretion protein HlyD; SPTR: Secretion protein HlyD family protein YP_004655987.1 KEGG: pdi:BDI_1304 hypothetical protein; SPTR: uncharacterized protein YP_004655993.1 InterPro IPR001387; KEGG: fjo:Fjoh_4208 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family YP_004655994.1 PFAM: Helix-turn-helix; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: cpi:Cpin_3396 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004655995.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: cpi:Cpin_3395 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS YP_004655996.1 PFAM: Histidine kinase; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: cpi:Cpin_6217 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor YP_004656001.1 InterPro IPR007822; KEGG: cpi:Cpin_3397 lanthionine synthetase C family protein; PFAM: Lanthionine synthetase C-like; SPTR: Lanthionine synthetase C family protein YP_004656002.1 PFAM: Lanthionine synthetase C-like protein; InterPro IPR006826:IPR006827; KEGG: cpi:Cpin_3392 lantibiotic dehydratase; PFAM: Lantibiotic dehydratase, C-terminal; Lantibiotic dehydratase, N-terminal; SPTR: Lantibiotic dehydratase domain protein YP_004656003.1 PFAM: Lantibiotic dehydratase, N terminus; Lantibiotic dehydratase, C terminus; TIGRFAM: thiopeptide-type bacteriocin biosynthesis domain; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR005074:IPR001140:IPR003439:IPR003593; KEGG: shg:Sph21_0591 xenobiotic-transporting ATPase; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Bacteriocin ABC transporter, ATP-binding/permease YP_004656004.1 PFAM: ABC transporter; ABC transporter transmembrane region; Peptidase C39 family YP_004656005.1 InterPro IPR013740; KEGG: ahe:Arch_1469 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Redoxin; SPTR: uncharacterized protein YP_004656006.1 PFAM: AhpC/TSA family; KEGG: shg:Sph21_0589 hypothetical protein; SPTR: uncharacterized protein YP_004656010.1 InterPro IPR001387; KEGG: sli:Slin_1148 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family YP_004656011.1 PFAM: Helix-turn-helix; InterPro IPR012944; KEGG: sli:Slin_0022 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein YP_004656012.1 PFAM: SusD family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_0021 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor YP_004656013.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3282 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004656014.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_3283 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein YP_004656015.1 PFAM: SusD family; COGs: COG1562 Phytoene/squalene synthetase; InterPro IPR002060; KEGG: sli:Slin_5959 squalene/phytoene synthase; PFAM: Squalene/phytoene synthase; SPTR: Squalene/phytoene synthase YP_004656016.1 PFAM: Squalene/phytoene synthase; COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR014105:IPR002937; KEGG: sli:Slin_5960 phytoene desaturase; PFAM: Amine oxidase; SPTR: Phytoene desaturase; TIGRFAM: Zeta-phytoene desaturase YP_004656017.1 PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase; Prodigal; manually curated YP_004656018.1 InterPro IPR012944; KEGG: sli:Slin_3419 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein YP_004656019.1 PFAM: SusD family; InterPro IPR012910:IPR000531; KEGG: sli:Slin_3420 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004656020.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family YP_004656021.1 COGs: COG2936 acyl esterase; InterPro IPR005674:IPR000383:IPR013736; KEGG: sus:Acid_1582 X-Pro dipeptidyl-peptidase domain-containing protein; PFAM: Peptidase S15/CocE/NonD, C-terminal; Peptidase S15; SPTR: Acylase, ; TIGRFAM: CocE/NonD hydrolase YP_004656022.1 PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: hydrolase, CocE/NonD family; InterPro IPR002860; KEGG: aba:Acid345_0515 hypothetical protein; PFAM: BNR repeat; SPTR: uncharacterized protein YP_004656023.1 PFAM: BNR/Asp-box repeat; COGs: COG1649 conserved hypothetical protein; InterPro IPR003790:IPR003961; KEGG: dfe:Dfer_3734 protein of unknown function DUF187; PFAM: Protein of unknown function DUF187; Fibronectin, type III; SPTR: uncharacterized protein YP_004656024.1 PFAM: Uncharacterised BCR, COG1649; COGs: COG1912 conserved hypothetical protein; InterPro IPR002747; KEGG: cpi:Cpin_4936 hypothetical protein; PFAM: Protein of unknown function DUF62; SPTR: uncharacterized protein YP_004656025.1 PFAM: S-adenosyl-l-methionine hydroxide adenosyltransferase; COGs: COG3876 conserved hypothetical protein; InterPro IPR008302; KEGG: lil:LA_0544 hypothetical protein; PFAM: Uncharacterised conserved protein UCP016719; SPTR: uncharacterized protein YP_004656026.1 PFAM: Protein of unknown function (DUF1343); COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR011547; KEGG: sli:Slin_5026 sulfate transporter; PFAM: Sulphate transporter; SPTR: Sulphate transporter YP_004656027.1 PFAM: Sulfate transporter family; InterPro IPR005067; KEGG: sli:Slin_4583 acyl-(acyl-carrier-protein) desaturase; PFAM: Fatty acid desaturase, type 2; PRIAM: Acyl-[acyl-carrier-protein] desaturase; SPTR: Acyl-(Acyl-carrier-protein) desaturase YP_004656028.1 PFAM: Fatty acid desaturase; COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: sli:Slin_4584 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase YP_004656029.1 PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases YP_004656030.1 COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR011547; KEGG: dfe:Dfer_2931 sulphate transporter; PFAM: Sulphate transporter; SPTR: Sulphate transporter YP_004656031.1 PFAM: Sulfate transporter family; COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR011547; KEGG: rbi:RB2501_07590 sulfate transporter; PFAM: Sulphate transporter; SPTR: Sulfate transporter family protein YP_004656032.1 PFAM: Sulfate transporter family; COGs: COG0288 Carbonic anhydrase; InterPro IPR001765; KEGG: dfe:Dfer_4665 carbonate dehydratase; PFAM: Carbonic anhydrase; PRIAM: Carbonate dehydratase; SPTR: Carbonic anhydrase YP_004656033.1 PFAM: Carbonic anhydrase; KEGG: rbi:RB2501_00501 membrane associated hydrolase; SPTR: membrane associated hydrolase YP_004656034.1 PFAM: Domain of unknown function (DUF1083); InterPro IPR013740; KEGG: sli:Slin_4427 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Redoxin; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_004656035.1 PFAM: AhpC/TSA family; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: bba:Bd2163 sugar transport protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Sugar transport protein YP_004656036.1 PFAM: Major Facilitator Superfamily; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: dfe:Dfer_4727 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004656037.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG1457 Purine-cytosine permease and related protein; KEGG: rmr:Rmar_0690 transmembrane prediction; SPTR: nucleoside transport protein YP_004656039.1 InterPro IPR010476; KEGG: cpi:Cpin_4926 rhamnose-proton symporter; PFAM: RhaT l-rhamnose-proton symport 2; SPTR: RhaT l-rhamnose-proton symport 2 YP_004656040.1 PFAM: L-rhamnose-proton symport protein (RhaT); COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: sli:Slin_6496 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein YP_004656041.1 PFAM: ABC transporter; InterPro IPR006311:IPR012307; KEGG: dfe:Dfer_4958 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004656042.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: dfe:Dfer_3708 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004656043.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG1200 RecG-like helicase; InterProIPR004609:IPR004365:IPR011545:IPR001650:IPR 014001; KEGG: dfe:Dfer_4892 ATP-dependent DNA helicase RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent DNA helicase RecG; TIGRFAM: DNA helicase, ATP-dependent, RecG YP_004656044.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecG; InterPro IPR011462; KEGG: ppn:Palpr_2869 hypothetical protein; SPTR: uncharacterized protein YP_004656045.1 PFAM: Transposase IS200 like; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: dfe:Dfer_3788 UvrD/REP helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: UvrD/REP helicase YP_004656046.1 PFAM: UvrD/REP helicase; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: dfe:Dfer_4308 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein YP_004656047.1 PFAM: Protein of unknown function (DUF820); COGs: COG0632 Holliday junction resolvasome DNA-binding subunit; HAMAP: Holliday junction ATP-dependent DNA helicase ruvA; InterPro IPR000085:IPR013849:IPR011114; KEGG: dfe:Dfer_4464 Holliday junction DNA helicase RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal; SPTR: Holliday junction ATP-dependent DNA helicase ruvA; TIGRFAM: Bacterial DNA recombination protein RuvA YP_004656048.1 PFAM: RuvA, C-terminal domain; RuvA N terminal domain; TIGRFAM: Holliday junction DNA helicase, RuvA subunit; InterPro IPR013097; KEGG: dfe:Dfer_3797 stress responsive alpha-beta barrel domain protein; PFAM: Stress responsive alpha-beta barrel; SPTR: Stress responsive alpha-beta barrel domain protein YP_004656049.1 PFAM: Stress responsive A/B Barrel Domain; KEGG: dfe:Dfer_3796 hypothetical protein; SPTR: uncharacterized protein YP_004656050.1 KEGG: ran:Riean_1311 hypothetical protein; SPTR: uncharacterized protein YP_004656051.1 InterPro IPR018750; KEGG: cpi:Cpin_0833 hypothetical protein; PFAM: Protein of unknown function DUF2306, membrane; SPTR: uncharacterized protein YP_004656052.1 PFAM: Predicted membrane protein (DUF2306); COGs: COG0133 Tryptophan synthase beta chain; HAMAP: Tryptophan synthase beta chain; InterPro IPR006654:IPR001926; KEGG: lby:Lbys_2384 tryptophan synthase, beta chain; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Tryptophan synthase; SPTR: Tryptophan synthase beta chain; TIGRFAM: Tryptophan synthase, beta chain YP_004656053.1 PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: tryptophan synthase, beta subunit; COGs: COG0135 Phosphoribosylanthranilate isomerase; InterPro IPR001240; KEGG: dfe:Dfer_3794 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); PRIAM: Phosphoribosylanthranilate isomerase; SPTR: Phosphoribosylanthranilate isomerase YP_004656054.1 PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; COGs: COG0134 Indole-3-glycerol phosphate synthase; InterPro IPR013798; KEGG: dfe:Dfer_3793 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; PRIAM: Indole-3-glycerol-phosphate synthase; SPTR: Indole-3-glycerol phosphate synthase YP_004656055.1 PFAM: Indole-3-glycerol phosphate synthase; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: dfe:Dfer_4673 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein YP_004656056.1 PFAM: Protein of unknown function (DUF820); COGs: COG0547 Anthranilate phosphoribosyltransferase; HAMAP: Anthranilate phosphoribosyl transferase; InterPro IPR005940:IPR017459:IPR000312; KEGG: dfe:Dfer_3792 anthranilate phosphoribosyltransferase; PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; PRIAM: Anthranilate phosphoribosyltransferase; SPTR: Anthranilate phosphoribosyltransferase; TIGRFAM: Anthranilate phosphoribosyl transferase YP_004656057.1 PFAM: Glycosyl transferase, a/b domain; Glycosyl transferase, helical bundle domain; TIGRFAM: anthranilate phosphoribosyltransferase; COGs: COG0181 Porphobilinogen deaminase; HAMAP: Porphobilinogen deaminase; InterPro IPR000860; KEGG: dfe:Dfer_3276 porphobilinogen deaminase; PFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; SPTR: Porphobilinogen deaminase; TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase YP_004656058.1 PFAM: Porphobilinogen deaminase, C-terminal domain; Porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase; InterPro IPR014968; KEGG: sli:Slin_1546 XisI protein; PFAM: XisI protein; SPTR: XisI protein YP_004656059.1 PFAM: XisI protein; COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR011611; KEGG: sli:Slin_6505 PfkB domain protein; PFAM: Carbohydrate/purine kinase; SPTR: PfkB domain protein YP_004656060.1 PFAM: pfkB family carbohydrate kinase; TIGRFAM: rfaE bifunctional protein, domain I; COGs: COG0512 Anthranilate/para-aminobenzoate synthase component II; InterPro IPR006221:IPR000991; KEGG: dfe:Dfer_3791 glutamine amidotransferase of anthranilate synthase; PFAM: Glutamine amidotransferase class-I, C-terminal; PRIAM: Anthranilate synthase; SPTR: Glutamine amidotransferase of anthranilate synthase; TIGRFAM: Glutamine amidotransferase of anthranilate synthase YP_004656061.1 PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase; COGs: COG1803 Methylglyoxal synthase; HAMAP: Methylglyoxal synthase; InterPro IPR004363:IPR011607; KEGG: lby:Lbys_1178 methylglyoxal synthase; PFAM: MGS-like; PRIAM: Methylglyoxal synthase; SPTR: Methylglyoxal synthase; TIGRFAM: Methylglyoxal synthase YP_004656062.1 PFAM: MGS-like domain; TIGRFAM: methylglyoxal synthase; COGs: COG0171 NAD synthase; InterPro IPR003694:IPR003010; KEGG: dfe:Dfer_2832 NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase; PRIAM: NAD(+) synthase (glutamine-hydrolyzing); SPTR: NAD+ synthetase; TIGRFAM: NAD+ synthase YP_004656063.1 PFAM: NAD synthase; Carbon-nitrogen hydrolase; TIGRFAM: NAD+ synthetase; KEGG: sru:SRU_0224 colanic acid biosynthesis glycosyl transferase; SPTR: colanic acid biosynthesis glycosyl transferase YP_004656065.1 PFAM: AhpC/TSA family; InterPro IPR012910:IPR000531; KEGG: sli:Slin_4222 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004656066.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: sli:Slin_4221 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein YP_004656067.1 PFAM: SusD family; KEGG: sli:Slin_4220 hypothetical protein; SPTR: uncharacterized protein YP_004656068.1 KEGG: sli:Slin_4219 hypothetical protein; SPTR: uncharacterized protein YP_004656069.1 COGs: COG3291 FOG: PKD repeat; InterPro IPR000601; KEGG: sli:Slin_4218 PKD domain containing protein; PFAM: PKD; SMART: PKD; SPTR: PKD domain containing protein YP_004656070.1 PFAM: Pregnancy-associated plasma protein-A; PKD domain; COGs: COG0155 Sulfite reductase beta subunit (hemoprotein); InterPro IPR005117:IPR006067:IPR007842; KEGG: sli:Slin_2051 sulfite reductase (ferredoxin); PFAM: Nitrite/sulphite reductase 4Fe-4S region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; HEPN; PRIAM: Ferredoxin--nitrite reductase; SPTR: Sulfite reductase (Ferredoxin) YP_004656071.1 PFAM: HEPN domain; Nitrite and sulphite reductase 4Fe-4S domain; Nitrite/Sulfite reductase ferredoxin-like half domain; COGs: COG0007 Uroporphyrinogen-III methylase; InterPro IPR006366:IPR000878; KEGG: dfe:Dfer_2619 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase; PRIAM: Uroporphyrinogen-III C-methyltransferase; SPTR: Uroporphyrin-III C-methyltransferase; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal YP_004656072.1 PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase; COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2; InterPro IPR000594:IPR007901:IPR001763; KEGG: rxy:Rxyl_0743 UBA/ThiF-type NAD/FAD binding fold; PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; SMART: Rhodanese-like; SPTR: Molybdopterin biosynthesis protein YP_004656073.1 PFAM: MoeZ/MoeB domain; Rhodanese-like domain; ThiF family; COGs: COG4121 conserved hypothetical protein; InterPro IPR008471; KEGG: sli:Slin_4488 hypothetical protein; PFAM: Protein of unknown function DUF752; SPTR: uncharacterized protein YP_004656074.1 PFAM: Protein of unknown function (DUF752); KEGG: aex:Astex_3689 hypothetical protein; SPTR: uncharacterized protein YP_004656076.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_1972 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004656077.1 PFAM: short chain dehydrogenase; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076:IPR017941; KEGG: dfe:Dfer_2187 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] iron-sulphur domain; SPTR: FAD dependent oxidoreductase YP_004656078.1 PFAM: Rieske [2Fe-2S] domain; FAD dependent oxidoreductase; Prodigal; manually curated YP_004656079.1 PFAM: Acyl-protein synthetase, LuxE; KEGG: sli:Slin_3617 hypothetical protein; SPTR: uncharacterized protein YP_004656080.1 KEGG: sli:Slin_5308 hypothetical protein; SPTR: uncharacterized protein YP_004656082.1 KEGG: sli:Slin_5950 hypothetical protein; SPTR: uncharacterized protein YP_004656083.1 KEGG: sli:Slin_5949 hypothetical protein; SPTR: uncharacterized protein YP_004656084.1 PFAM: Peptidase C25; KEGG: sli:Slin_5948 hypothetical protein; SPTR: uncharacterized protein YP_004656085.1 PFAM: SprT-like family; KEGG: sli:Slin_2296 hypothetical protein; SPTR: uncharacterized protein YP_004656086.1 COGs: COG0740 Protease subunit of ATP-dependent Clp protease; HAMAP: ATP-dependent Clp protease proteolytic subunit; InterPro IPR001907; KEGG: dfe:Dfer_4574 endopeptidase Clp; PFAM: Peptidase S14, ClpP; PRIAM: Endopeptidase Clp; SPTR: ATP-dependent Clp protease proteolytic subunit YP_004656087.1 PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; COGs: COG1293 RNA-binding protein homologous to eukaryotic snRNP; InterPro IPR008616:IPR008532; KEGG: sli:Slin_0279 hypothetical protein; PFAM: Protein of unknown function DUF814; Fibronectin-binding A, N-terminal; SPTR: uncharacterized protein YP_004656088.1 PFAM: Domain of unknown function (DUF814); Fibronectin-binding protein A N-terminus (FbpA); COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: dfe:Dfer_2601 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family YP_004656089.1 PFAM: Bacterial regulatory proteins, lacI family; family; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: fbc:FB2170_09056 NADH-dependent dihydrogenase; PFAM: Oxidoreductase, N-terminal; SPTR: NADH-dependent dehydrogenase YP_004656090.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold YP_004656091.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311; KEGG: dfe:Dfer_0267 oxidoreductase domain protein; SPTR: Oxidoreductase domain protein YP_004656092.1 KEGG: psl:Psta_2085 hypothetical protein; SPTR: uncharacterized protein YP_004656093.1 COGs: COG1312 D-mannonate dehydratase; HAMAP: Mannonate dehydratase; InterPro IPR004628; KEGG: sli:Slin_6196 mannonate dehydratase; PFAM: Mannonate dehydratase; PRIAM: Mannonate dehydratase; SPTR: Mannonate dehydratase 2; TIGRFAM: Mannonate dehydratase YP_004656094.1 PFAM: D-mannonate dehydratase (UxuA); TIGRFAM: mannonate dehydratase; KEGG: lby:Lbys_0121 hypothetical protein; SPTR: uncharacterized protein YP_004656095.1 PFAM: Transposase IS200 like; COGs: COG3661 Alpha-glucuronidase; InterPro IPR005154:IPR011100:IPR011099; KEGG: sli:Slin_6197 alpha-glucuronidase; PFAM: Glycosyl hydrolase 67 middle; Glycoside hydrolase 67; Glycosyl hydrolase 67, C-terminal; PRIAM: Alpha-glucuronidase; SPTR: Alpha-glucuronidase YP_004656096.1 PFAM: Glycosyl hydrolase 67 C-terminus; Glycosyl hydrolase 67 middle domain; Glycosyl hydrolase 67 N-terminus; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_6198 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004656097.1 PFAM: short chain dehydrogenase; InterPro IPR013740; KEGG: sli:Slin_1863 redoxin; PFAM: Redoxin; SPTR: Redoxin domain protein YP_004656098.1 PFAM: Redoxin; KEGG: cpi:Cpin_2806 hypothetical protein; SPTR: WD40 domain protein beta Propeller YP_004656099.1 KEGG: ppn:Palpr_0675 hypothetical protein; SPTR: uncharacterized protein YP_004656100.1 COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR006311:IPR001466; KEGG: sli:Slin_2368 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase YP_004656101.1 PFAM: Beta-lactamase; InterPro IPR013096; KEGG: sli:Slin_3322 cupin; PFAM: Cupin 2, conserved barrel; SPTR: Cupin 2 conserved barrel domain protein YP_004656102.1 PFAM: Cupin domain; COGs: COG2730 Endoglucanase; InterPro IPR006311:IPR001547; KEGG: sli:Slin_3338 glycoside hydrolase 5; PFAM: Glycoside hydrolase, family 5; SPTR: Glycoside hydrolase 5 YP_004656103.1 PFAM: Cellulase (glycosyl hydrolase 5); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; InterPro IPR013737:IPR008902; KEGG: sli:Slin_1249 alpha-L-rhamnosidase; PFAM: Bacterial alpha-L-rhamnosidase; Bacterial alpha-L-rhamnosidase N-terminal; SPTR: Alpha-L-rhamnosidase YP_004656104.1 PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain; COGs: COG2273 Beta-glucanase/Beta-glucan synthetase; InterPro IPR000757; KEGG: plu:plu3518 hypothetical protein; PFAM: Glycoside hydrolase, family 16; SPTR: Glycoside hydrolase 16 YP_004656105.1 PFAM: Glycosyl hydrolases family 16; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: fbc:FB2170_05940 sulfatase; PFAM: Sulfatase; SPTR: sulfatase YP_004656106.1 PFAM: Sulfatase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917:IPR008902; KEGG: phe:Phep_3974 alpha-L-rhamnosidase; PFAM: Bacterial alpha-L-rhamnosidase; Sulfatase; PRIAM: Arylsulfatase; SPTR: Mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase) YP_004656109.1 InterPro IPR014922; KEGG: kko:Kkor_1113 hypothetical protein; PFAM: Protein of unknown function DUF1801; SPTR: uncharacterized protein YP_004656110.1 PFAM: Domain of unknown function (DU1801); COGs: COG3938 Proline racemase; InterPro IPR008794; KEGG: cpi:Cpin_5572 hydroxyproline-2-epimerase; PFAM: Proline racemase; PRIAM: 4-hydroxyproline epimerase; SPTR: Proline racemase YP_004656111.1 PFAM: Proline racemase; KEGG: pca:Pcar_0295 restriction endonuclease; SPTR: uncharacterized protein YP_004656113.1 KEGG: shg:Sph21_3755 rubredoxin-type Fe(Cys)4 protein; SPTR: Rubredoxin YP_004656114.1 COGs: COG3383 Uncharacterized anaerobic dehydrogenase; InterProIPR006963:IPR006656:IPR006657:IPR013027:IPR 007419; KEGG: dfe:Dfer_2062 molybdopterin oxidoreductase; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding region; PRIAM: Nitrate reductase., Nitrite reductase (NAD(P)H); SPTR: Molybdopterin oxidoreductase YP_004656115.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; BFD-like [2Fe-2S] binding domain; Molybdopterin oxidoreductase Fe4S4 domain; COGs: COG2223 Nitrate/nitrite transporter; InterPro IPR011701; KEGG: sli:Slin_5402 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004656116.1 PFAM: Major Facilitator Superfamily; TIGRFAM: nitrite extrusion protein (nitrite facilitator); KEGG: sli:Slin_5403 hypothetical protein; SPTR: uncharacterized protein YP_004656117.1 COGs: COG0547 Anthranilate phosphoribosyltransferase; KEGG: sli:Slin_5627 anthranilate phosphoribosyltransferase-like protein; SPTR: Anthranilate phosphoribosyltransferase-like protein YP_004656118.1 COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; HAMAP: tRNA-specific 2-thiouridylase; InterPro IPR004506:IPR018318; KEGG: dfe:Dfer_2662 tRNA-specific 2-thiouridylase MnmA; PFAM: tRNA methyl transferase-like; SPTR: tRNA-specific 2-thiouridylase mnmA; TIGRFAM: tRNA-specific 2-thiouridylase YP_004656119.1 PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: dfe:Dfer_2633 hypothetical protein; SPTR: uncharacterized protein YP_004656120.1 KEGG: sli:Slin_4775 hypothetical protein; SPTR: uncharacterized protein YP_004656121.1 PFAM: Protein of unknown function (DUF3244); COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: fbc:FB2170_14138 hypothetical protein; PFAM: Signal transduction histidine kinase, internal region; SPTR: membrane protein YP_004656122.1 PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_2868 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004656123.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG2935 arginyl-tRNA:protein arginylyltransferase; InterPro IPR007472; KEGG: lby:Lbys_1323 arginine-tRNA-protein transferase domain protein; PFAM: Arginine-tRNA-protein transferase, C-terminal; SPTR: Arginine-tRNA-protein transferase domain protein YP_004656124.1 PFAM: Arginine-tRNA-protein transferase, C terminus; COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR006411:IPR000771; KEGG: sli:Slin_0254 fructose-bisphosphate aldolase, class II; PFAM: Ketose-bisphosphate aldolase, class-II; PRIAM: Fructose-bisphosphate aldolase; SPTR: Fructose-bisphosphate aldolase, class II; TIGRFAM: Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype; Ketose-bisphosphate aldolase, class-II YP_004656125.1 PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases; fructose-bisphosphate aldolase, class II, yeast/E. coli subtype; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650; KEGG: dfe:Dfer_3741 peptidase M20; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: Beta-Ala-His dipeptidase; SPTR: Peptidase M20 YP_004656126.1 PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; KEGG: zpr:ZPR_2888 hypothetical protein; SPTR: uncharacterized protein YP_004656127.1 KEGG: fjo:Fjoh_4428 glycoside hydrolase; SPTR: Glycosyl hydrolase 65 YP_004656129.1 KEGG: cyn:Cyan7425_2020 UDP-galactopyranose mutase; SPTR: UDP-galactopyranose mutase YP_004656130.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: cpi:Cpin_1791 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; manually curated YP_004656131.1 PFAM: Response regulator receiver domain; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterProIPR000014:IPR000673:IPR000780:IPR013767:IPR 013655:IPR003661:IPR003594:IPR001610; KEGG: sli:Slin_3102 signal transduction histidine kinase with CheB and CheR activity; PFAM: ATP-binding region, ATPase-like; PAS fold-3; Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; MCP methyltransferase, CheR-type; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PRIAM: Protein-glutamate methylesterase., Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase, CheR-type; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SPTR: Signal transduction histidine kinase with CheB and CheR activity; TIGRFAM: PAS YP_004656132.1 PFAM: CheB methylesterase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; CheR methyltransferase, SAM binding domain; His Kinase A (phosphoacceptor) domain; CheR methyltransferase, all-alpha domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; InterPro IPR000673; KEGG: sli:Slin_3103 CheB methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; PRIAM: Protein-glutamate methylesterase; SPTR: CheB methylesterase YP_004656133.1 PFAM: CheB methylesterase; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: dfe:Dfer_5585 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Estradiol 17-beta-dehydrogenase; SPTR: Probable oxidoreductase (Probable short-chain dehydrogenase) YP_004656134.1 PFAM: short chain dehydrogenase; COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154:IPR013149; KEGG: fjo:Fjoh_2657 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; SPTR: Alcohol dehydrogenase GroES domain protein YP_004656135.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: dfe:Dfer_0898 linoleoyl-CoA desaturase; PFAM: Fatty acid desaturase, type 1; PRIAM: Linoleoyl-CoA desaturase; SPTR: Linoleoyl-CoA desaturase YP_004656136.1 PFAM: Fatty acid desaturase; COGs: COG3564 conserved hypothetical protein; InterPro IPR008497; KEGG: nwa:Nwat_3004 hypothetical protein; PFAM: Protein of unknown function DUF779; SPTR: uncharacterized protein YP_004656137.1 PFAM: Protein of unknown function (DUF779); COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: dfe:Dfer_0072 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; SPTR: Aldehyde dehydrogenase YP_004656138.1 PFAM: Aldehyde dehydrogenase YP_004656139.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: cpi:Cpin_4153 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: transcriptional regulator (AraC/XylS family protein) YP_004656140.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-type transcriptional regulator N-terminus; COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; InterPro IPR006148; KEGG: phe:Phep_0774 glucosamine-6-phosphate deaminase; PFAM: Glucosamine/galactosamine-6-phosphate isomerase; PRIAM: Glucosamine-6-phosphate deaminase; SPTR: Glucosamine/galactosamine-6-phosphate isomerase YP_004656141.1 PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; TIGRFAM: glucosamine-6-phosphate isomerase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: dfe:Dfer_3265 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; PRIAM: Alpha-N-acetylgalactosaminidase; SPTR: Oxidoreductase domain protein YP_004656142.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG0249 Mismatch repair ATPase (MutS family); HAMAP: DNA mismatch repair protein MutS, type 1; InterProIPR005748:IPR007695:IPR007860:IPR007696:IPR 007861:IPR000432; KEGG: sli:Slin_0516 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS, clamp; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; SPTR: DNA mismatch repair protein mutS; TIGRFAM: DNA mismatch repair protein MutS, type 1 YP_004656143.1 PFAM: MutS family domain IV; MutS domain II; MutS domain V; MutS domain I; MutS domain III; TIGRFAM: DNA mismatch repair protein MutS; COGs: COG4886 Leucine-rich repeat (LRR) protein; InterPro IPR001611:IPR003591; KEGG: amr:AM1_2038 leucine-rich repeat-containing protein; PFAM: Leucine-rich repeat; PRIAM: Adenylate cyclase; SPTR: Leucine-rich repeat containing outermembrane protein YP_004656144.1 PFAM: Leucine Rich Repeat; manually curated YP_004656145.1 PFAM: Bacterial protein of unknown function (DUF894); COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR013096:IPR000005:IPR018060; KEGG: cpi:Cpin_1891 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; Cupin 2, conserved barrel; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004656146.1 PFAM: Cupin domain; Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1858 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004656147.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: shg:Sph21_2862 RagB/SusD domain-containing protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein YP_004656148.1 PFAM: SusD family; KEGG: dfe:Dfer_1563 hypothetical protein; SPTR: uncharacterized protein YP_004656149.1 COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933; KEGG: aca:ACP_1347 Tat pathway signal sequence domain protein; PRIAM: Alpha-L-fucosidase; SMART: Glycoside hydrolase, family 29; SPTR: Tat pathway signal sequence domain protein YP_004656150.1 PFAM: Alpha-L-fucosidase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sli:Slin_0583 sulfatase; PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: Sulfatase YP_004656151.1 PFAM: Sulfatase; COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933; KEGG: bvu:BVU_1046 glycoside hydrolase; PRIAM: Alpha-L-fucosidase; SMART: Glycoside hydrolase, family 29; SPTR: uncharacterized protein YP_004656152.1 PFAM: Alpha-L-fucosidase; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013342; KEGG: dfe:Dfer_1860 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; SPTR: Mandelate racemase/muconate lactonizing protein YP_004656153.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: rca:Rcas_2118 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004656154.1 PFAM: short chain dehydrogenase; InterPro IPR008000; KEGG: pdi:BDI_0103 hypothetical protein; PFAM: Rhamnose mutarotase; SPTR: uncharacterized protein YP_004656155.1 PFAM: Domain of unknown function (DUF718); COGs: COG0738 Fucose permease; InterPro IPR005275:IPR005964:IPR011701; KEGG: cpi:Cpin_1994 L-fucose transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: L-fucose transporter; TIGRFAM: Bacterial glucose/galactose transporter; L-fucose permease YP_004656156.1 PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter; L-fucose:H+ symporter permease; COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933:IPR000421; KEGG: sli:Slin_2796 alpha-L-fucosidase; PFAM: Glycoside hydrolase, family 29; Coagulation factor 5/8 type, C-terminal; SMART: Glycoside hydrolase, family 29; SPTR: Alpha-L-fucosidase YP_004656157.1 PFAM: F5/8 type C domain; Alpha-L-fucosidase; KEGG: sur:STAUR_2877 hypothetical protein; SPTR: uncharacterized protein YP_004656158.1 PFAM: Glycosyl hydrolase 65 central catalytic domain; KEGG: dfe:Dfer_2146 hypothetical protein; SPTR: uncharacterized protein YP_004656159.1 KEGG: pbs:Plabr_1678 hypothetical protein; SPTR: uncharacterized protein YP_004656160.1 PFAM: Glycosyl hydrolases family 43; KEGG: pbs:Plabr_1678 hypothetical protein; SPTR: uncharacterized protein YP_004656161.1 PFAM: Glycosyl hydrolases family 43; InterPro IPR006104; KEGG: dfe:Dfer_2269 glycoside hydrolase 2 sugar binding; PFAM: Glycoside hydrolase 2, carbohydrate-binding; SPTR: glycosyslhydrolase YP_004656162.1 COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: sli:Slin_4008 LacI family transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family YP_004656163.1 PFAM: Bacterial regulatory proteins, lacI family; family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_2412 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor YP_004656164.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: sli:Slin_2413 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein YP_004656165.1 PFAM: SusD family; KEGG: dfe:Dfer_2604 hypothetical protein; SPTR: uncharacterized protein YP_004656166.1 InterPro IPR002218; KEGG: dfe:Dfer_2605 pyridine nucleotide-disulphide oxidoreductase; PFAM: Glucose-inhibited division protein A-related; SPTR: pyridine nucleotide-disulphide oxidoreductase YP_004656167.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: dfe:Dfer_2606 ApbE family lipoprotein; PFAM: ApbE-like lipoprotein; SPTR: ApbE family lipoprotein YP_004656168.1 PFAM: ApbE family; KEGG: sli:Slin_2422 hypothetical protein; SPTR: uncharacterized protein YP_004656169.1 PFAM: N-terminal ig-like domain of cellulase; KEGG: sli:Slin_2414 hypothetical protein; SPTR: uncharacterized protein YP_004656170.1 PFAM: Glycosyl hydrolases family 43; KEGG: sli:Slin_2415 hypothetical protein; SPTR: uncharacterized protein YP_004656171.1 COGs: COG0591 Na+/proline symporter; InterPro IPR019900:IPR001734; KEGG: dfe:Dfer_2608 SSS sodium solute transporter superfamily; PFAM: Sodium/solute symporter; SPTR: SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup YP_004656172.1 PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006102:IPR006103:IPR001547; KEGG: sli:Slin_2419 beta-galactosidase; PFAM: Glycoside hydrolase 2, carbohydrate-binding; Glycoside hydrolase 2, immunoglobulin-like beta-sandwich; Glycoside hydrolase 2, TIM barrel; Glycoside hydrolase, family 5; PRIAM: Beta-glucuronidase; SPTR: Beta-galactosidase YP_004656173.1 PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; InterPro IPR003953; KEGG: sli:Slin_2420 hypothetical protein; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; SPTR: uncharacterized protein YP_004656174.1 PFAM: FAD binding domain; COGs: COG3652 outer membrane protein; KEGG: dfe:Dfer_3182 outer membrane protein-like protein; SPTR: Outer membrane protein-like protein YP_004656175.1 COGs: COG4876 conserved hypothetical protein; InterPro IPR018691; KEGG: gym:GYMC10_2045 protein of unknown function DUF2188; PFAM: Protein of unknown function DUF2188; SPTR: uncharacterized protein YP_004656176.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2188); KEGG: chu:CHU_2068 hypothetical protein; SPTR: uncharacterized protein YP_004656177.1 KEGG: mtt:Ftrac_2093 hypothetical protein; SPTR: uncharacterized protein YP_004656178.1 COGs: COG0263 Glutamate 5-kinase; InterPro IPR005715:IPR001048:IPR002478; KEGG: sli:Slin_0426 glutamate 5-kinase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase; SMART: Pseudouridine synthase/archaeosine transglycosylase; SPTR: Glutamate 5-kinase; TIGRFAM: Glutamate 5-kinase, ProB-related YP_004656179.1 PFAM: PUA domain; Amino acid kinase; TIGRFAM: glutamate 5-kinase; COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: sli:Slin_5151 heat shock protein HSP20; PFAM: Heat shock protein Hsp20; SPTR: Heat shock protein Hsp20 YP_004656180.1 PFAM: Hsp20/alpha crystallin family; InterPro IPR010432; KEGG: rci:RCIX2340 hypothetical protein; PFAM: RDD; SPTR: uncharacterized protein YP_004656181.1 PFAM: RDD family; KEGG: pca:Pcar_0371 hypothetical protein; SPTR: uncharacterized protein YP_004656182.1 PFAM: Protein of unknown function (DUF2752); COGs: COG2008 Threonine aldolase; InterPro IPR001597; KEGG: dfe:Dfer_4745 threonine aldolase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase; PRIAM: Threonine aldolase; SPTR: Threonine aldolase YP_004656183.1 PFAM: Beta-eliminating lyase YP_004656184.1 COGs: COG2928 conserved hypothetical protein; InterPro IPR007462; KEGG: dfe:Dfer_5011 protein of unknown function DUF502; PFAM: Protein of unknown function DUF502; SPTR: uncharacterized protein YP_004656185.1 PFAM: Protein of unknown function (DUF502); COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018481; KEGG: dfe:Dfer_0249 glycosyl transferase 4; PFAM: Glycosyl transferase, family 4, conserved region; SPTR: Glycosyl transferase 4 YP_004656186.1 PFAM: Glycosyl transferase 4; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_2592 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004656187.1 PFAM: Glycosyl transferase 2; COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); KEGG: sli:Slin_2591 colanic acid biosynthesis acetyltransferase WcaF; SPTR: colanic acid biosynthesis acetyltransferase WcaF YP_004656188.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_0252 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004656189.1 PFAM: Glycosyl transferase 2; COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; InterPro IPR006264:IPR001986; KEGG: dfe:Dfer_5009 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; PRIAM: 3-phosphoshikimate 1-carboxyvinyltransferase; SPTR: 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup YP_004656190.1 PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR001140:IPR003439:IPR003593; KEGG: dfe:Dfer_0068 ABC transporter related; PFAM: ABC transporter-like; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related YP_004656191.1 PFAM: ABC transporter; ABC transporter transmembrane region; COGs: COG3568 Metal-dependent hydrolase; InterPro IPR005135; KEGG: sli:Slin_4762 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase YP_004656192.1 PFAM: Endonuclease/Exonuclease/phosphatase; InterPro IPR012944; KEGG: sli:Slin_4761 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein YP_004656193.1 PFAM: SusD family; InterPro IPR012910:IPR000531; KEGG: sli:Slin_4760 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004656194.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: sli:Slin_5418 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR YP_004656195.1 PFAM: FecR protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_1462 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004656196.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650; KEGG: mxa:MXAN_2289 hypothetical protein; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: Gly-Xaa carboxypeptidase; SPTR: Peptidase, M20E (Gly-X carboxypeptidase) subfamily YP_004656197.1 PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; COGs: COG0262 Dihydrofolate reductase; InterPro IPR001796; KEGG: sli:Slin_1051 dihydrofolate reductase; PFAM: Dihydrofolate reductase region; PRIAM: Dihydrofolate reductase; SPTR: Dihydrofolate reductase YP_004656198.1 PFAM: Dihydrofolate reductase; KEGG: bfo:BRAFLDRAFT_89036 hypothetical protein; SPTR: hemagglutinin-related protein YP_004656199.1 InterPro IPR003088; KEGG: dfe:Dfer_3236 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I YP_004656200.1 PFAM: Cytochrome c; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: sli:Slin_2896 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein YP_004656201.1 PFAM: Protein of unknown function (DUF820); InterPro IPR006342; KEGG: dfe:Dfer_4789 methyltransferase FkbM family; SPTR: Methyltransferase FkbM family; TIGRFAM: Methyltransferase FkbM YP_004656202.1 TIGRFAM: methyltransferase, FkbM family; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dfe:Dfer_4786 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1 YP_004656203.1 PFAM: Glycosyl transferases group 1; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: dfe:Dfer_2713 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004656204.1 PFAM: short chain dehydrogenase; KEGG: dfe:Dfer_3999 hypothetical protein; SPTR: uncharacterized protein YP_004656205.1 InterPro IPR003675; KEGG: cao:Celal_3410 abortive infection protein; PFAM: Abortive infection protein; SPTR: Abortive infection protein YP_004656206.1 PFAM: CAAX amino terminal protease; COGs: COG4420 membrane protein; InterPro IPR010406; KEGG: cpi:Cpin_1225 hypothetical protein; PFAM: Protein of unknown function DUF1003; SPTR: uncharacterized protein; manually curated YP_004656207.1 PFAM: Protein of unknown function (DUF1003); COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR011904:IPR000873; KEGG: sli:Slin_2894 acetate/CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Acetate--CoA ligase; SPTR: Acetyl-coenzyme A synthetase; TIGRFAM: Acetate--CoA ligase YP_004656208.1 PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme; TIGRFAM: acetate--CoA ligase; manually curated YP_004656209.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR005828; KEGG: fjo:Fjoh_1409 major facilitator transporter; PFAM: General substrate transporter; SPTR: Major facilitator superfamily MFS_1 YP_004656210.1 PFAM: Sugar (and other) transporter; InterPro IPR000182; KEGG: pbs:Plabr_1279 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase YP_004656211.1 PFAM: Acetyltransferase (GNAT) family; SPTR: uncharacterized protein YP_004656212.1 COGs: COG0628 permease; InterPro IPR002549; KEGG: chu:CHU_2927 permease; PFAM: Uncharacterised protein family UPF0118; SPTR: Permease YP_004656213.1 PFAM: Domain of unknown function DUF20; COGs: COG3685 conserved hypothetical protein; InterPro IPR010287; KEGG: phe:Phep_1308 hypothetical protein; PFAM: Protein of unknown function DUF892; SPTR: uncharacterized protein YP_004656214.1 PFAM: Domain of unknown function (DUF892); COGs: COG0439 Biotin carboxylase; InterPro IPR004549:IPR005481:IPR005479:IPR005482; KEGG: dfe:Dfer_4148 acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; PRIAM: Biotin carboxylase; SPTR: Acetyl-CoA carboxylase, biotin carboxylase; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase YP_004656215.1 PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit; COGs: COG0511 Biotin carboxyl carrier protein; InterPro IPR001249:IPR000089; KEGG: sli:Slin_5246 acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: Biotin/lipoyl attachment; SPTR: Acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: Acetyl-CoA biotin carboxyl carrier YP_004656216.1 PFAM: Biotin-requiring enzyme; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; COGs: COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); HAMAP: Translation elongation factor P; InterPro IPR011768:IPR013185:IPR001059:IPR015365; KEGG: sli:Slin_5247 translation elongation factor P; PFAM: Translation elongation factor, KOW-like; Translation elongation factor P/YeiP, central; Elongation factor P, C-terminal; SPTR: Elongation factor P; TIGRFAM: Translation elongation factor P YP_004656217.1 PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P; COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); InterPro IPR004655:IPR013751:IPR013747; KEGG: dfe:Dfer_4151 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase I; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase 3 2; TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH) YP_004656218.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; COGs: COG0416 Fatty acid/phospholipid biosynthesis enzyme; HAMAP: Phospholipid biosynthesis protein, PlsX like; InterPro IPR012281:IPR003664; KEGG: dfe:Dfer_4152 fatty acid/phospholipid synthesis protein PlsX; PFAM: Fatty acid synthesis plsX protein; SPTR: Phosphate acyltransferase; TIGRFAM: Phospholipid biosynthesis protein, PlsX like YP_004656219.1 PFAM: Fatty acid synthesis protein; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; HAMAP: Ribosomal protein L32p; InterPro IPR002677; KEGG: dfe:Dfer_4153 ribosomal protein L32; PFAM: Ribosomal protein L32p; SPTR: 50S ribosomal protein L32; TIGRFAM: Ribosomal protein L32p YP_004656220.1 PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; InterPro IPR003772; KEGG: dfe:Dfer_4154 protein of unknown function DUF177; PFAM: Protein of unknown function DUF177; SPTR: uncharacterized protein YP_004656221.1 PFAM: Uncharacterized ACR, COG1399; KEGG: cpi:Cpin_0240 hypothetical protein; SPTR: uncharacterized protein YP_004656222.1 InterPro IPR011701; KEGG: sli:Slin_1089 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004656223.1 PFAM: Major Facilitator Superfamily; COGs: COG4704 conserved hypothetical protein; InterPro IPR018673; KEGG: sli:Slin_1194 hypothetical protein; PFAM: Protein of unknown function DUF2141; SPTR: uncharacterized protein YP_004656224.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2141); KEGG: cly:Celly_0054 hypothetical protein; SPTR: uncharacterized protein YP_004656225.1 PFAM: Protein of unknown function (DUF2911); KEGG: sli:Slin_0961 hypothetical protein; SPTR: uncharacterized protein YP_004656226.1 PFAM: Planctomycete cytochrome C; InterPro IPR006311:IPR010869; KEGG: dfe:Dfer_1594 protein of unknown function DUF1501; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein YP_004656227.1 PFAM: Protein of unknown function (DUF1501); InterPro IPR011429:IPR011444; KEGG: dfe:Dfer_1978 protein of unknown function DUF1549; PFAM: Protein of unknown function DUF1549; Cytochrome C, Planctomycete; SPTR: uncharacterized protein YP_004656228.1 PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553); COGs: COG1597 Sphingosine kinase; InterPro IPR005218:IPR001206; KEGG: fbc:FB2170_15613 hypothetical protein; PFAM: Diacylglycerol kinase, catalytic region; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00147 YP_004656229.1 PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: lipid kinase, YegS/Rv2252/BmrU family; COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: ava:Ava_4167 hypothetical protein; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein YP_004656230.1 PFAM: Protein of unknown function (DUF433); COGs: COG4634 conserved hypothetical protein; KEGG: syf:Synpcc7942_0532 hypothetical protein; SPTR: uncharacterized protein YP_004656231.1 PFAM: Protein of unknown function DUF82; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR001140:IPR003439:IPR003593; KEGG: sli:Slin_6513 ABC transporter; PFAM: ABC transporter-like; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein YP_004656232.1 PFAM: ABC transporter; ABC transporter transmembrane region; Prodigal; manually curated YP_004656233.1 KEGG: sli:Slin_2244 pirin; SPTR: Pirin-like protein YP_004656234.1 PFAM: Pirin; KEGG: smm:Smp_184790 hypothetical protein; SPTR: uncharacterized protein YP_004656235.1 COGs: COG3485 Protocatechuate 3 4-dioxygenase beta subunit; InterPro IPR000627; KEGG: sli:Slin_2243 intradiol ring-cleavage dioxygenase; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; SPTR: Intradiol ring-cleavage dioxygenase YP_004656236.1 PFAM: Dioxygenase; COGs: COG0793 Periplasmic protease; InterPro IPR005151; KEGG: ppn:Palpr_1231 hypothetical protein; PFAM: Peptidase S41; SMART: Peptidase S41; SPTR: Conserved repeat domain protein YP_004656237.1 PFAM: Peptidase S41 YP_004656238.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_2242 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004656239.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_2241 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS YP_004656240.1 PFAM: Histidine kinase YP_004656241.1 InterPro IPR001387:IPR013096; KEGG: shg:Sph21_0215 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family YP_004656242.1 PFAM: Cupin domain; Helix-turn-helix; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: dfe:Dfer_2670 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28 YP_004656243.1 PFAM: Peptidase M28; COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: sli:Slin_1904 L-sorbosone dehydrogenase; SPTR: L-sorbosone dehydrogenase YP_004656244.1 PFAM: Glucose / Sorbosone dehydrogenase; InterPro IPR002781; KEGG: cly:Celly_1275 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: uncharacterized protein YP_004656245.1 PFAM: Sulfite exporter TauE/SafE; InterPro IPR000182; KEGG: sli:Slin_2328 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase YP_004656246.1 PFAM: Acetyltransferase (GNAT) family YP_004656247.1 PFAM: Muconolactone delta-isomerase; COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155; KEGG: pmy:Pmen_2005 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; PRIAM: 12-oxophytodienoate reductase; SPTR: NADH:flavin oxidoreductase/NADH oxidase YP_004656248.1 PFAM: NADH:flavin oxidoreductase / NADH oxidase; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: bbe:BBR47_37980 hypothetical protein; PFAM: Helix-turn-helix, HxlR type; SPTR: uncharacterized protein YP_004656249.1 PFAM: HxlR-like helix-turn-helix; KEGG: lby:Lbys_3464 hypothetical protein; SPTR: uncharacterized protein YP_004656250.1 KEGG: gym:GYMC10_3038 hypothetical protein; SPTR: uncharacterized protein YP_004656251.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: dfe:Dfer_1399 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004656252.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Prodigal; manually curated YP_004656253.1 PFAM: Bacterial regulatory protein, arsR family; KEGG: sli:Slin_5721 hypothetical protein; SPTR: uncharacterized protein YP_004656254.1 KEGG: mtt:Ftrac_1064 hypothetical protein; SPTR: uncharacterized protein YP_004656255.1 KEGG: sli:Slin_5723 TetR family transcriptional regulator; SPTR: Transcriptional regulator, TetR family YP_004656256.1 PFAM: Bacterial regulatory proteins, tetR family YP_004656257.1 COGs: COG3655 transcriptional regulator protein; InterPro IPR001387; KEGG: fba:FIC_01723 DNA-binding protein; SMART: Helix-turn-helix type 3; SPTR: DNA-binding protein YP_004656258.1 PFAM: Helix-turn-helix; KEGG: lby:Lbys_0955 hypothetical protein; SPTR: uncharacterized protein YP_004656260.1 KEGG: swp:swp_4221 hypothetical protein; SPTR: Predicted protein YP_004656261.1 InterPro IPR012867; KEGG: mtt:Ftrac_3142 hypothetical protein; PFAM: Protein of unknown function DUF1648; SPTR: uncharacterized protein YP_004656262.1 PFAM: Protein of unknown function (DUF1648); KEGG: sli:Slin_6607 hypothetical protein; SPTR: uncharacterized protein YP_004656263.1 COGs: COG3292 periplasmic ligand-binding sensor domain; InterPro IPR011110; KEGG: sli:Slin_6608 transcriptional regulator; PFAM: Two component regulator propeller; SPTR: Two component regulator propeller domain protein YP_004656264.1 PFAM: Two component regulator propeller; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR014327:IPR007627:IPR013249; KEGG: dfe:Dfer_4314 transcriptional regulator, LuxR family; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: Transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70 YP_004656265.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3220 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004656266.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: dfe:Dfer_0616 hypothetical protein; SPTR: uncharacterized protein YP_004656267.1 COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_0615 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004656268.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: dfe:Dfer_0616 hypothetical protein; SPTR: uncharacterized protein YP_004656269.1 COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: lby:Lbys_3376 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004656270.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: lby:Lbys_3377 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004656271.1 KEGG: sli:Slin_6613 hypothetical protein; SPTR: uncharacterized protein YP_004656272.1 COGs: COG4287 PhoPQ-activated pathogenicity-related protein; InterPro IPR009199; KEGG: dfe:Dfer_3217 hypothetical protein; PFAM: PhoPQ-activated pathogenicity-related protein, PqaA type; SPTR: uncharacterized protein YP_004656273.1 PFAM: PhoPQ-activated pathogenicity-related protein; COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129; KEGG: dfe:Dfer_3215 glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase; SPTR: Glycerophosphoryl diester phosphodiesterase YP_004656274.1 PFAM: Glycerophosphoryl diester phosphodiesterase YP_004656275.1 COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129:IPR003140; KEGG: dfe:Dfer_3909 glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase; Phospholipase/carboxylesterase; SPTR: Glycerophosphoryl diester phosphodiesterase YP_004656276.1 PFAM: Glycerophosphoryl diester phosphodiesterase; alpha/beta hydrolase fold; InterPro IPR004843; KEGG: dfe:Dfer_3216 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase YP_004656277.1 PFAM: Calcineurin-like phosphoesterase; COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545:IPR001650:IPR014001; KEGG: sli:Slin_3330 DEAD/DEAH box helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein YP_004656278.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; InterPro IPR003088; KEGG: fbc:FB2170_05305 large, multifunctional secreted protein; PFAM: Cytochrome c, class I; SPTR: large, multifunctional secreted protein YP_004656279.1 COGs: COG4948 L-alanine-DL-glutamate epimerase; KEGG: dfe:Dfer_1270 L-alanine-DL-glutamate epimerase-like protein; SPTR: L-alanine-DL-glutamate epimerase-like protein YP_004656280.1 COGs: COG4299 conserved hypothetical protein; InterPro IPR019259; KEGG: dfe:Dfer_3263 hypothetical protein; PFAM: Protein of unknown function DUF2261, transmembrane; SPTR: uncharacterized protein YP_004656282.1 KEGG: sli:Slin_6079 hypothetical protein; SPTR: uncharacterized protein YP_004656283.1 COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: dfe:Dfer_0298 esterase; PFAM: esterase; SPTR: esterase YP_004656284.1 PFAM: esterase; KEGG: plm:Plim_2823 hypothetical protein; SPTR: uncharacterized protein YP_004656285.1 PFAM: Caspase domain; KEGG: sli:Slin_3815 hypothetical protein; SPTR: uncharacterized protein YP_004656287.1 KEGG: bcq:BCQ_0190 hypothetical protein; SPTR: uncharacterized protein YP_004656288.1 KEGG: chu:CHU_2913 hypothetical protein; SPTR: uncharacterized protein YP_004656289.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein; manually curated YP_004656290.1 COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154:IPR013149; KEGG: rxy:Rxyl_2398 zinc-binding alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SPTR: Alcohol dehydrogenase, zinc-binding protein YP_004656291.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; COGs: COG1764 redox protein regulator of disulfide bond formation; InterPro IPR019953:IPR003718; KEGG: bbe:BBR47_57740 organic hydroperoxide resistance protein; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: Probable organic hydroperoxide resistance protein; TIGRFAM: Peroxiredoxin, organic hydroperoxide resistance-related YP_004656292.1 PFAM: OsmC-like protein; TIGRFAM: peroxiredoxin, Ohr subfamily; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: bcm:Bcenmc03_6416 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Estradiol 17-beta-dehydrogenase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004656293.1 PFAM: short chain dehydrogenase; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: shg:Sph21_3082 transcriptional regulator, HxlR family; PFAM: Helix-turn-helix, HxlR type; SPTR: Phage integrase site-specific recombinase YP_004656294.1 PFAM: HxlR-like helix-turn-helix; manually curated YP_004656295.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: dfe:Dfer_3211 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase YP_004656296.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006102; KEGG: shg:Sph21_1908 Mannosylglycoprotein endo-beta-mannosidase; PFAM: Glycoside hydrolase 2, immunoglobulin-like beta-sandwich; Glycoside hydrolase 2, carbohydrate-binding; PRIAM: Mannosylglycoprotein endo-beta-mannosidase; SPTR: Glycoside hydrolase YP_004656297.1 PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; KEGG: sli:Slin_6579 hypothetical protein; SPTR: uncharacterized protein YP_004656298.1 COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220; KEGG: sti:Sthe_3503 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase; SPTR: uncharacterized protein YP_004656299.1 PFAM: Dihydrodipicolinate synthetase; Prodigal; manually curated YP_004656300.1 PFAM: alpha/beta hydrolase fold; KEGG: dfe:Dfer_1870 hypothetical protein; SPTR: uncharacterized protein YP_004656301.1 COGs: COG2312 Erythromycin esterase homolog; InterPro IPR007815; KEGG: aoe:Clos_1312 erythromycin esterase; PFAM: Erythromycin esterase; SPTR: Erythromycin esterase YP_004656302.1 PFAM: Erythromycin esterase; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: fjo:Fjoh_4283 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signaling protein without kinase domain YP_004656303.1 PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_0826 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two-component system response regulator protein YP_004656304.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; Prodigal; manually curated YP_004656305.1 PFAM: Domain of Unknown Function (DUF1080); Domain of unknown function (DUF377); COGs: COG4275 conserved hypothetical protein; InterPro IPR018634:IPR000005:IPR018060; KEGG: dfe:Dfer_2046 transcriptional regulator, AraC family; PFAM: Chromate resistance exported protein; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004656306.1 PFAM: Chromate resistance exported protein; Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: sli:Slin_2824 hypothetical protein; SPTR: uncharacterized protein YP_004656307.1 KEGG: phe:Phep_2396 hypothetical protein; SPTR: uncharacterized protein YP_004656308.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469:IPR001375; KEGG: zpr:ZPR_4589 peptidase S9B dipeptidylpeptidase IV subunit; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; Peptidase S9, prolyl oligopeptidase, catalytic domain; SPTR: Peptidase S9B dipeptidylpeptidase IV subunit YP_004656309.1 PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region; COGs: COG0252 L-asparaginase/ Glu-tRNAGln amidotransferase subunit D; InterPro IPR004550:IPR006034; KEGG: cao:Celal_4233 asparaginase; PFAM: Asparaginase/glutaminase; PRIAM: Asparaginase; SPTR: Asparaginase; TIGRFAM: L-asparaginase, type II YP_004656310.1 PFAM: Asparaginase; TIGRFAM: L-asparaginases, type II; KEGG: sus:Acid_4767 hypothetical protein; SPTR: uncharacterized protein YP_004656311.1 PFAM: Protein of unknown function (DUF3500); COGs: COG5616 integral membrane protein; InterPro IPR000005:IPR001440:IPR018060:IPR019734; KEGG: dfe:Dfer_0645 TPR repeat-containing protein; PFAM: Helix-turn-helix, AraC type; Tetratricopeptide TPR-1; PRIAM: Adenylate cyclase; SMART: Helix-turn-helix, AraC domain; Tetratricopeptide repeat; SPTR: TPR repeat-containing protein YP_004656312.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR005074:IPR003439:IPR003593; KEGG: sli:Slin_4701 ABC transporter; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein YP_004656313.1 PFAM: Peptidase C39 family; ABC transporter; KEGG: fjo:Fjoh_1297 hypothetical protein; SPTR: hemolysin secretion transport system membrane protein YP_004656314.1 InterPro IPR012970:IPR003159:IPR004103; KEGG: phe:Phep_0786 polysaccharide lyase 8; PFAM: Polysaccharide lyase 8, central domain; Polysaccharide lyase 8, N-terminal alpha-helical; Polysaccharide lyase 8, C-terminal; PRIAM: Chondroitin AC lyase; SPTR: uncharacterized protein YP_004656315.1 PFAM: Polysaccharide lyase 8, N terminal alpha-helical domain; Polysaccharide lyase 8, super-sandwich domain; Polysaccharide lyase 8, C-terminal beta-sandwich domain YP_004656317.1 KEGG: sli:Slin_6085 hypothetical protein; SPTR: uncharacterized protein YP_004656318.1 COGs: COG1609 Transcriptional regulators; InterPro IPR001761:IPR000005:IPR018060; KEGG: dfe:Dfer_4330 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; Periplasmic binding protein/LacI transcriptional regulator; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004656319.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; family; COGs: COG0738 Fucose permease; InterPro IPR011701; KEGG: dfe:Dfer_4329 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004656320.1 PFAM: Major Facilitator Superfamily; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: sli:Slin_6585 ROK family protein; PFAM: ROK; PRIAM: Glucokinase; SPTR: ROK family protein YP_004656321.1 PFAM: ROK family; COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015883:IPR004867; KEGG: sli:Slin_6586 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; Glycoside hydrolase, family 20, C-terminal; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Beta-N-acetylhexosaminidase YP_004656322.1 PFAM: carbohydrate binding domain; Glycosyl hydrolase 20, catalytic domain; Glycosyl hydrolase 20, domain 2; Chitobiase/beta-hexosaminidase C-terminal domain; COGs: COG4299 conserved hypothetical protein; InterPro IPR019259; KEGG: sli:Slin_6587 heparan-alpha-glucosaminide N-acetyltransferase; PFAM: Protein of unknown function DUF2261, transmembrane; SPTR: Heparan-alpha-glucosaminide N-acetyltransferase YP_004656323.1 PFAM: Protein of unknown function (DUF1624); InterPro IPR004843; KEGG: fbc:FB2170_04120 hypothetical protein; PFAM: Metallophosphoesterase; SPTR: uncharacterized protein YP_004656324.1 PFAM: Calcineurin-like phosphoesterase; KEGG: dfe:Dfer_4325 hypothetical protein; SPTR: uncharacterized protein YP_004656325.1 InterPro IPR004843; KEGG: pbs:Plabr_0120 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase YP_004656326.1 PFAM: Calcineurin-like phosphoesterase; KEGG: ddi:DDB_G0286243 hypothetical protein; SPTR: uncharacterized protein YP_004656330.1 Prodigal; manually curated YP_004656331.1 PFAM: NIPSNAP; COGs: COG4993 Glucose dehydrogenase; InterPro IPR019551:IPR002372:IPR003088:IPR018391; KEGG: dfe:Dfer_0311 pyrrolo-quinoline quinone; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; Cytochrome c, class I; PRIAM: Quinoprotein glucose dehydrogenase; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Pyrrolo-quinoline quinone YP_004656332.1 PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus; Cytochrome c; PQQ enzyme repeat; InterPro IPR001440:IPR019734; KEGG: dfe:Dfer_2755 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein YP_004656333.1 PFAM: Tetratricopeptide repeat; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: sli:Slin_1742 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; SPTR: Aldehyde dehydrogenase YP_004656334.1 PFAM: Aldehyde dehydrogenase; InterPro IPR001387; KEGG: dfe:Dfer_1213 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family YP_004656335.1 PFAM: Helix-turn-helix; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: coc:Coch_0498 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Estradiol 17-beta-dehydrogenase; SPTR: Short-chain alcohol-related dehydrogenase YP_004656336.1 PFAM: short chain dehydrogenase; KEGG: dfe:Dfer_3623 hypothetical protein; SPTR: uncharacterized protein YP_004656337.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: chu:CHU_0537 HlyD family multidrug resistance protein; PFAM: Secretion protein HlyD; SPTR: Multidrug resistance protein; HlyD family secretion protein; TIGRFAM: Secretion protein HlyD YP_004656338.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR004764:IPR001036; KEGG: chu:CHU_0538 AcrB/AcrD family multidrug resistance protein; PFAM: Acriflavin resistance protein; SPTR: AcrB/AcrD family multidrug resistance protein; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1 YP_004656339.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; COGs: COG1538 Outer membrane protein; InterPro IPR010131:IPR003423; KEGG: chu:CHU_0539 outer membrane lipoprotein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT YP_004656340.1 PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; KEGG: cpi:Cpin_3252 outer membrane protein; SPTR: Outer membrane protein, OMP85 family YP_004656341.1 PFAM: Surface antigen; COGs: COG3104 Dipeptide/tripeptide permease; InterPro IPR005279:IPR000109; KEGG: bth:BT_4385 di-tripeptide ABC transporter; PFAM: Oligopeptide transporter; SPTR: uncharacterized protein; TIGRFAM: Amino acid/peptide transporter YP_004656342.1 PFAM: POT family; TIGRFAM: amino acid/peptide transporter (Peptide:H+ symporter), bacterial; COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: dfe:Dfer_3731 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase YP_004656343.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase; KEGG: sli:Slin_4550 TonB-dependent receptor plug; SPTR: TonB-dependent receptor plug YP_004656344.1 PFAM: MG2 domain; COGs: COG0136 Aspartate-semialdehyde dehydrogenase; InterPro IPR005986:IPR000534:IPR012280; KEGG: sli:Slin_5364 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation region; Semialdehyde dehydrogenase, NAD-binding; PRIAM: Aspartate-semialdehyde dehydrogenase; SPTR: Aspartate-semialdehyde dehydrogenase; TIGRFAM: Aspartate-semialdehyde dehydrogenase, bacterial YP_004656345.1 PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (peptidoglycan organisms); InterPro IPR005202; KEGG: sur:STAUR_0635 GRAs-like transcription factor; PFAM: GRAS transcription factor; SPTR: GAI protein YP_004656346.1 PFAM: GRAS family transcription factor; COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839; KEGG: dtu:Dtur_1122 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/II; PRIAM: Histidinol-phosphate transaminase; SPTR: Histidinol-phosphate aminotransferase YP_004656347.1 PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: dfe:Dfer_4878 peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; PRIAM: Membrane alanyl aminopeptidase; SPTR: Peptidase M1 membrane alanine aminopeptidase YP_004656348.1 PFAM: Peptidase M1; manually curated YP_004656349.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: sli:Slin_4006 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein YP_004656350.1 PFAM: OmpA family; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_5120 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004656351.1 PFAM: Glycosyl transferase 2; COGs: COG0591 Na+/proline symporter; InterPro IPR019900:IPR001734; KEGG: dfe:Dfer_3985 SSS sodium solute transporter superfamily; PFAM: Sodium/solute symporter; SPTR: SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup YP_004656352.1 PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; COGs: COG3836 2 4-dihydroxyhept-2-ene-1 7-dioic acid aldolase; InterPro IPR005000; KEGG: sli:Slin_6606 HpcH/HpaI aldolase; PFAM: HpcH/HpaI aldolase; SPTR: HpcH/HpaI aldolase YP_004656353.1 PFAM: HpcH/HpaI aldolase/citrate lyase; KEGG: sli:Slin_6605 hypothetical protein; SPTR: uncharacterized protein YP_004656354.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: dfe:Dfer_0546 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein YP_004656355.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; InterPro IPR002591; KEGG: dfe:Dfer_3007 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase YP_004656356.1 PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase; InterPro IPR004843; KEGG: sli:Slin_6603 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase YP_004656357.1 PFAM: Calcineurin-like phosphoesterase YP_004656358.1 KEGG: sli:Slin_6157 hypothetical protein; SPTR: uncharacterized protein YP_004656360.1 COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; KEGG: bfs:BF1083 hypothetical protein; SPTR: uncharacterized protein YP_004656361.1 COGs: COG1282 NAD/NADP transhydrogenase beta subunit; InterPro IPR004003; KEGG: cpi:Cpin_6489 NAD(P)(+) transhydrogenase (AB-specific); PFAM: NAD(P) transhydrogenase, beta subunit; PRIAM: NAD(P)(+) transhydrogenase (AB-specific); SPTR: NAD(P) transhydrogenase subunit beta YP_004656362.1 PFAM: NAD(P) transhydrogenase beta subunit; COGs: COG3288 NAD/NADP transhydrogenase alpha subunit; KEGG: cpi:Cpin_6490 pyridine nucleotide transhydrogenase subunit alpha; SPTR: Pyridine nucleotide transhydrogenase subunit alpha YP_004656363.1 COGs: COG3288 NAD/NADP transhydrogenase alpha subunit; InterPro IPR007886:IPR007698; KEGG: syp:SYNPCC7002_A0986 nicotinamide nucleotide transhydrogenase, chain alpha, part 1; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal; PRIAM: NAD(P)(+) transhydrogenase (AB-specific); SPTR: NAD(P) transhydrogenase, alpha subunit part 1 YP_004656364.1 PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: NAD(P) transhydrogenase, alpha subunit; COGs: COG1312 D-mannonate dehydratase; HAMAP: Mannonate dehydratase; InterPro IPR004628; KEGG: dfe:Dfer_4123 mannonate dehydratase; PFAM: Mannonate dehydratase; PRIAM: Mannonate dehydratase; SPTR: Mannonate dehydratase 1; TIGRFAM: Mannonate dehydratase YP_004656365.1 PFAM: D-mannonate dehydratase (UxuA); TIGRFAM: mannonate dehydratase; InterPro IPR005151; KEGG: cpi:Cpin_6359 peptidase S41; PFAM: Peptidase S41; SPTR: Peptidase S41 YP_004656366.1 PFAM: Peptidase S41 YP_004656367.1 Prodigal; manually curated YP_004656368.1 KEGG: chu:CHU_2575 two-component response regulator; SPTR: Two-component system response regulator protein YP_004656369.1 COGs: COG1220 ATP-dependent protease HslVU (ClpYQ) ATPase subunit; HAMAP: ATP-dependent hsl protease ATP-binding subunit hslU; InterPro IPR004491:IPR013093:IPR019489:IPR003593; KEGG: sli:Slin_1628 heat shock protein HslVU, ATPase HslU; PFAM: ATPase associated with various cellular activities, AAA-2; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent protease ATPase subunit HslU; TIGRFAM: Heat shock protein HslU YP_004656370.1 PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ATPase associated with various cellular activities (AAA); TIGRFAM: ATP-dependent protease HslVU, ATPase subunit; KEGG: sli:Slin_5184 hypothetical protein; SPTR: uncharacterized protein YP_004656371.1 KEGG: sli:Slin_4386 hypothetical protein; SPTR: uncharacterized protein YP_004656372.1 KEGG: chu:CHU_3424 hypothetical protein; SPTR: uncharacterized protein YP_004656373.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254:IPR001478; KEGG: sli:Slin_2676 HtrA2 peptidase; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF; SPTR: HtrA2 peptidase YP_004656374.1 PFAM: Trypsin; KEGG: sli:Slin_2675 hypothetical protein; SPTR: uncharacterized protein YP_004656375.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rbi:RB2501_10772 arylsulphatase A; PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: Arylsulphatase A YP_004656376.1 PFAM: Sulfatase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rbi:RB2501_10737 N-acetylglucosamine-6-sulfatase; PFAM: Sulfatase; PRIAM: N-acetylglucosamine-6-sulfatase; SPTR: N-acetylglucosamine-6-sulfatase YP_004656377.1 PFAM: Sulfatase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: psn:Pedsa_1812 sulfatase; PFAM: Sulfatase; PRIAM: N-sulfoglucosamine sulfohydrolase; SPTR: Heparan N-sulfatase YP_004656378.1 PFAM: Sulfatase; COGs: COG1624 conserved hypothetical protein; InterPro IPR014046:IPR003390; KEGG: sli:Slin_2673 hypothetical protein; PFAM: DNA integrity scanning protein, DisA, N-terminal; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00159 YP_004656379.1 PFAM: DisA bacterial checkpoint controller nucleotide-binding; TIGRFAM: TIGR00159 family protein; COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: dfe:Dfer_4069 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein; SPTR: SNARE associated Golgi protein YP_004656380.1 PFAM: SNARE associated Golgi protein; COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_4068 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related YP_004656381.1 PFAM: ABC transporter; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: cpi:Cpin_0010 LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SPTR: uncharacterized protein YP_004656382.1 PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; COGs: COG4585 Signal transduction histidine kinase; KEGG: cpi:Cpin_6820 histidine kinase; SPTR: Two-component sensor histidine kinase; manually curated YP_004656383.1 PFAM: Histidine kinase; COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594; KEGG: cpi:Cpin_6820 histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: Histidine kinase YP_004656384.1 PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; KEGG: cpi:Cpin_6819 hypothetical protein; SPTR: uncharacterized protein YP_004656386.1 InterPro IPR011579; KEGG: fba:FIC_01835 ATPase; SPTR: Archaeal ATPase, fused to C-terminal DUF234 domain YP_004656387.1 PFAM: Archaeal ATPase; COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439:IPR003593; KEGG: lby:Lbys_3306 ABC transporter related protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein YP_004656388.1 PFAM: ABC transporter; COGs: COG0174 Glutamine synthetase; InterPro IPR008147:IPR008146; KEGG: sli:Slin_2432 glutamate--ammonia ligase; PFAM: Glutamine synthetase, catalytic region; Glutamine synthetase, beta-Grasp; PRIAM: Glutamate--ammonia ligase; SPTR: Glutamine synthetase YP_004656389.1 PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; InterPro IPR008894; KEGG: dfe:Dfer_3416 WxcM domain protein; PFAM: WxcM-like, C-terminal; SPTR: WxcM domain protein YP_004656390.1 PFAM: WxcM-like, C-terminal; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: dfe:Dfer_3415 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: dTDP-6-deoxy-D-xylo-hex-3-ulose aminase YP_004656391.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_3414 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004656392.1 PFAM: Glycosyl transferase 2; InterPro IPR013217; KEGG: sli:Slin_0292 MCP methyltransferase, CheR-type; PFAM: Methyltransferase type 12; SPTR: MCP methyltransferase, CheR-type YP_004656393.1 PFAM: Methyltransferase domain; KEGG: dfe:Dfer_5350 hypothetical protein; SPTR: uncharacterized protein YP_004656394.1 COGs: COG1363 Cellulase M and related protein; InterPro IPR008007; KEGG: sli:Slin_1139 peptidase M42 family protein; PFAM: Peptidase M42; PRIAM: Cellulase; SPTR: Peptidase M42 family protein YP_004656395.1 PFAM: M42 glutamyl aminopeptidase; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601; KEGG: sli:Slin_4878 PKD domain containing protein; PFAM: PKD; SMART: PKD; SPTR: PKD domain containing protein YP_004656396.1 PFAM: PKD domain YP_004656397.1 COGs: COG4805 conserved hypothetical protein; InterPro IPR010281; KEGG: cpi:Cpin_5570 hypothetical protein; PFAM: Protein of unknown function DUF885, bacterial; SPTR: uncharacterized protein YP_004656398.1 PFAM: Bacterial protein of unknown function (DUF885); COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: sli:Slin_6458 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004656399.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG1106 ATPase; KEGG: cyn:Cyan7425_2148 hypothetical protein; SPTR: Abortive infection protein YP_004656400.1 KEGG: sez:Sez_0212 abortive phage resistance protein; SPTR: uncharacterized protein YP_004656401.1 InterPro IPR002559; KEGG: app:CAP2UW1_1881 transposase IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase IS4 family protein YP_004656402.1 PFAM: Transposase DDE domain; KEGG: sli:Slin_0249 hypothetical protein; SPTR: uncharacterized protein YP_004656403.1 PFAM: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; InterPro IPR000014:IPR013767:IPR001610; KEGG: sli:Slin_4536 PAS/PAC sensor protein; PFAM: PAS fold; SMART: PAC motif; SPTR: uncharacterized protein; TIGRFAM: PAS YP_004656404.1 PFAM: PAS fold; TIGRFAM: PAS domain S-box; COGs: COG1858 Cytochrome c peroxidase; InterPro IPR004852; KEGG: dfe:Dfer_3388 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; PRIAM: Cytochrome-c peroxidase; SPTR: Cytochrome-c peroxidase YP_004656405.1 PFAM: Cytochrome c; Di-haem cytochrome c peroxidase; KEGG: sli:Slin_3490 hypothetical protein; SPTR: uncharacterized protein YP_004656406.1 COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: dfe:Dfer_5149 transcriptional regulator, PadR-like family; PFAM: Transcriptional regulator PadR N-terminal-like; SPTR: Transcriptional regulator, PadR-like family YP_004656407.1 PFAM: Transcriptional regulator PadR-like family; KEGG: sli:Slin_2309 hypothetical protein; SPTR: uncharacterized protein YP_004656408.1 InterPro IPR006260:IPR003538; KEGG: sli:Slin_5090 TonB family protein; PFAM: Gram-negative bacterial tonB protein; SPTR: TonB family protein; TIGRFAM: TonB, C-terminal YP_004656409.1 PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain YP_004656410.1 COGs: COG0322 Nuclease subunit of the excinuclease complex; HAMAP: UvrABC system protein C; InterPro IPR004791:IPR000305:IPR001162:IPR000445; KEGG: dfe:Dfer_5031 excinuclease ABC, C subunit; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; Helix-hairpin-helix motif; SMART: Excinuclease ABC, C subunit, N-terminal; SPTR: UvrABC system protein C; TIGRFAM: Excinuclease ABC, C subunit YP_004656411.1 PFAM: UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit; KEGG: sli:Slin_5833 hypothetical protein; SPTR: uncharacterized protein YP_004656412.1 PFAM: Protein of unknown function (DUF2847); TIGRFAM: bacillithiol system protein YtxJ; COGs: COG1519 3-deoxy-D-manno-octulosonic-acid transferase; InterPro IPR007507; KEGG: sli:Slin_5831 3-deoxy-D-manno-octulosonic-acid transferase domain protein; PFAM: Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal; SPTR: Three-deoxy-D-manno-octulosonic-acid transferase domain protein YP_004656413.1 PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); KEGG: chu:CHU_3203 hypothetical protein; SPTR: uncharacterized protein YP_004656414.1 PFAM: Transposase IS200 like; KEGG: sli:Slin_0263 hypothetical protein; SPTR: uncharacterized protein YP_004656416.1 InterPro IPR002934; KEGG: sli:Slin_2850 DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase; SPTR: DNA polymerase beta domain protein region YP_004656417.1 PFAM: Nucleotidyltransferase domain; COGs: COG4320 conserved hypothetical protein; InterPro IPR018721; KEGG: bxe:Bxe_B2085 hypothetical protein; PFAM: Protein of unknown function DUF2252; SPTR: uncharacterized protein YP_004656418.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2252); COGs: COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); InterPro IPR000667; KEGG: dfe:Dfer_3782 D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; SPTR:D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D- alanine-endopeptidase YP_004656419.1 PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family; COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: dfe:Dfer_3558 polyprenyl synthetase; PFAM: Polyprenyl synthetase; SPTR: Polyprenyl synthetase YP_004656420.1 PFAM: Polyprenyl synthetase; COGs: COG3622 Hydroxypyruvate isomerase; InterPro IPR006311:IPR012307; KEGG: sli:Slin_3461 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004656421.1 PFAM: Xylose isomerase-like TIM barrel YP_004656422.1 COGs: COG3448 CBS-domain-containing membrane protein; InterPro IPR007065; KEGG: chu:CHU_1999 CBS domain-containing protein; PFAM: HPP; SPTR: CBS-domain-containing membrane protein YP_004656423.1 PFAM: HPP family YP_004656424.1 PFAM: Bacterial RNA polymerase, alpha chain C terminal domain; COGs: COG0114 Fumarase; HAMAP: Fumarate hydratase class II; InterPro IPR005677:IPR000362:IPR018951; KEGG: dfe:Dfer_2816 fumarate hydratase, class II; PFAM: Fumarate lyase; Fumarase C, C-terminal; PRIAM: Fumarate hydratase; SPTR: Fumarate hydratase, class II; TIGRFAM: Fumarate hydratase, class II YP_004656425.1 PFAM: Fumarase C C-terminus; Lyase; TIGRFAM: fumarate hydratase, class II YP_004656426.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: cpi:Cpin_3073 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004656427.1 PFAM: Major Facilitator Superfamily; InterPro IPR007168; KEGG: dfe:Dfer_3554 phage shock protein C, PspC; PFAM: PspC; SPTR: Phage shock protein C, PspC YP_004656428.1 PFAM: PspC domain; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076; KEGG: dfe:Dfer_0330 oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Oxidoreductase YP_004656429.1 PFAM: GMC oxidoreductase; COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: vpe:Varpa_2806 beta-ig-h3/fasciclin; PFAM: FAS1 domain; SMART: FAS1 domain; SPTR: Beta-Ig-H3/fasciclin YP_004656430.1 PFAM: Fasciclin domain; COGs: COG0520 Selenocysteine lyase; InterPro IPR000192; KEGG: sli:Slin_6132 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Isopenicillin-N epimerase; SPTR: Aminotransferase class V YP_004656431.1 PFAM: Aminotransferase class-V; COGs: COG1487 nucleic acid-binding protein contains PIN domain; InterPro IPR002716; KEGG: psn:Pedsa_2332 PilT protein domain protein; PFAM: PilT protein, N-terminal; SPTR: PilT protein domain protein YP_004656432.1 PFAM: PIN domain YP_004656433.1 COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: sli:Slin_6549 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28 YP_004656434.1 PFAM: Peptidase M28; KEGG: bhy:BHWA1_01800 hypothetical protein; SPTR: uncharacterized protein YP_004656435.1 COGs: COG1106 ATPase; InterPro IPR003395; KEGG: bpo:BP951000_0493 ATPase; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: Predicted ATPase YP_004656436.1 COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545:IPR001650:IPR014001; KEGG: sli:Slin_5691 DEAD/DEAH box helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein YP_004656437.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; InterPro IPR019734; KEGG: sli:Slin_5690 hypothetical protein; SPTR: Tetratricopeptide repeat protein YP_004656438.1 InterPro IPR000182; KEGG: sli:Slin_1013 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase YP_004656439.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: dfe:Dfer_0190 protein of unknown function DUF140; PFAM: Protein of unknown function DUF140; SPTR: uncharacterized protein YP_004656440.1 PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein; COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_0189 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein YP_004656441.1 PFAM: ABC transporter; COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: dfe:Dfer_0188 mammalian cell entry related domain protein; PFAM: Mammalian cell entry related; SPTR: Mammalian cell entry related domain protein YP_004656442.1 PFAM: mce related protein; COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155; KEGG: sli:Slin_3318 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; PRIAM: NADPH dehydrogenase; SPTR: NADH:flavin oxidoreductase/NADH oxidase YP_004656443.1 PFAM: NADH:flavin oxidoreductase / NADH oxidase; COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: fba:FIC_01253 UspA; PFAM: UspA; SPTR: UspA YP_004656444.1 PFAM: Universal stress protein family; InterPro IPR004013; KEGG: sli:Slin_3513 hypothetical protein; PFAM: PHP, C-terminal; SPTR: uncharacterized protein YP_004656445.1 PFAM: PHP domain; InterPro IPR001387; KEGG: pph:Ppha_1597 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix domain protein YP_004656446.1 PFAM: Helix-turn-helix; COGs: COG4680 conserved hypothetical protein; InterPro IPR018669; KEGG: pph:Ppha_1596 hypothetical protein; PFAM: Protein of unknown function DUF2136; SPTR: uncharacterized protein YP_004656447.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2136); KEGG: cpi:Cpin_5477 hypothetical protein; SPTR: uncharacterized protein YP_004656448.1 PFAM: Protein of unknown function (DUF2911); KEGG: psn:Pedsa_0379 hypothetical protein; SPTR: uncharacterized protein YP_004656449.1 InterPro IPR014870; KEGG: sli:Slin_6191 hypothetical protein; PFAM: Domain of unknown function DUF1793; SPTR: uncharacterized protein YP_004656450.1 PFAM: Domain of unknown function (DUF1793); COGs: COG3508 Homogentisate 1 2-dioxygenase; InterPro IPR005708; KEGG: lby:Lbys_3502 homogentisate 12-dioxygenase; PFAM: Homogentisate 1,2-dioxygenase; SPTR: Homogentisate 12-dioxygenase YP_004656451.1 PFAM: homogentisate 1,2-dioxygenase; TIGRFAM: homogentisate 1,2-dioxygenase; COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR005959:IPR015377:IPR002529; KEGG: lby:Lbys_3503 fumarylacetoacetase; PFAM: Fumarylacetoacetase, N-terminal; Fumarylacetoacetase, C-terminal-like; PRIAM: Fumarylacetoacetase; SPTR: Fumarylacetoacetase; TIGRFAM: Fumarylacetoacetase YP_004656452.1 PFAM: Domain of unknown function (DUF1969); Fumarylacetoacetate (FAA) hydrolase; TIGRFAM: fumarylacetoacetase; COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR002563; KEGG: lby:Lbys_3504 flavin reductase domain protein fmN-binding protein; PFAM: Flavin reductase-like, FMN-binding; SPTR: Flavin reductase domain protein FMN-binding protein YP_004656453.1 PFAM: Flavin reductase like domain; InterPro IPR001087; KEGG: dfe:Dfer_4894 hypothetical protein; PFAM: Lipase, GDSL; SPTR: uncharacterized protein YP_004656454.1 PFAM: GDSL-like Lipase/Acylhydrolase YP_004656455.1 KEGG: sli:Slin_4495 hypothetical protein; SPTR: uncharacterized protein YP_004656456.1 KEGG: sli:Slin_2497 hypothetical protein; SPTR: uncharacterized protein YP_004656457.1 KEGG: sli:Slin_2509 hypothetical protein; SPTR: uncharacterized protein YP_004656458.1 COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: sli:Slin_2531 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YceI family protein YP_004656459.1 PFAM: YceI-like domain; KEGG: sli:Slin_2530 hypothetical protein; SPTR: uncharacterized protein YP_004656460.1 InterPro IPR019545; KEGG: sli:Slin_2510 electron transfer DM13; PFAM: Electron transfer DM13; SPTR: Electron transfer DM13 YP_004656461.1 PFAM: Electron transfer DM13; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595:IPR001808; KEGG: fps:FP0703 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SPTR: Probable transcriptional regulatory protein, Crp/Fnr family YP_004656462.1 PFAM: Cyclic nucleotide-binding domain; KEGG: sli:Slin_2496 hypothetical protein; SPTR: uncharacterized protein YP_004656463.1 KEGG: sli:Slin_2514 hypothetical protein; SPTR: uncharacterized protein YP_004656464.1 KEGG: sli:Slin_2513 hypothetical protein; SPTR: uncharacterized protein YP_004656465.1 COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: sli:Slin_1341 esterase; PFAM: esterase; SPTR: esterase YP_004656466.1 PFAM: esterase; COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR000774:IPR001179; KEGG: dfe:Dfer_4633 peptidylprolyl isomerase FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal; Peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase YP_004656467.1 PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; COGs: COG0793 Periplasmic protease; InterPro IPR004447:IPR001478:IPR005151; KEGG: dfe:Dfer_4634 carboxyl-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; PRIAM: C-terminal processing peptidase; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: Carboxyl-terminal protease; TIGRFAM: Peptidase S41A, C-terminal protease YP_004656468.1 PFAM: C-terminal domain of tail specific protease (DUF3340); Peptidase S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); COGs: COG3411 Ferredoxin; KEGG: chu:CHU_0705 ferrodoxin; SPTR: Ferrodoxin YP_004656469.1 PFAM: Sucrase/ferredoxin-like; COGs: COG2252 Permease; InterPro IPR006043; KEGG: sli:Slin_0224 xanthine/uracil/vitamin C permease; PFAM: Xanthine/uracil/vitamin C permease; SPTR: Xanthine/uracil/vitamin C permease YP_004656470.1 PFAM: Permease; COGs: COG2115 Xylose isomerase; HAMAP: Xylose isomerase; InterPro IPR013452:IPR012307:IPR001998; KEGG: cpi:Cpin_1929 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; PRIAM: Xylose isomerase; SPTR: Xylose isomerase; TIGRFAM: Xylose isomerase, bacterial type YP_004656471.1 PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: xylose isomerase; COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220; KEGG: dfe:Dfer_3986 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase; SPTR: Dihydrodipicolinate synthetase; manually curated YP_004656472.1 PFAM: Dihydrodipicolinate synthetase; COGs: COG3533 conserved hypothetical protein; InterPro IPR012878; KEGG: pdi:BDI_3335 hypothetical protein; PFAM: Protein of unknown function DUF1680; SPTR: uncharacterized protein YP_004656473.1 PFAM: glycosyl hydrolase of unknown function (DUF1680); COGs: COG1297 membrane protein; InterPro IPR004813:IPR004814; KEGG: sli:Slin_5704 oligopeptide transporter OPT family; PFAM: Oligopeptide transporter OPT superfamily; SPTR: Oligopeptide transporter, OPT family; TIGRFAM: Oligopeptide transporter OPT; Oligopeptide transporter OPT superfamily YP_004656474.1 PFAM: OPT oligopeptide transporter protein; TIGRFAM: oligopeptide transporter, OPT family; oligopeptide transporters, OPT superfamily; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: sli:Slin_6008 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein YP_004656475.1 PFAM: AcrB/AcrD/AcrF family; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sli:Slin_6009 efflux transporter RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD YP_004656476.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_6010 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein YP_004656477.1 PFAM: Outer membrane efflux protein; KEGG: zpr:ZPR_3965 hypothetical protein; SPTR: Membrane protein YP_004656478.1 COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: lby:Lbys_2690 transcriptional regulator, TetR family; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family YP_004656479.1 PFAM: Bacterial regulatory proteins, tetR family; COGs: COG1403 Restriction endonuclease; InterPro IPR002711:IPR003615; KEGG: sli:Slin_5662 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: HNH endonuclease YP_004656480.1 PFAM: HNH endonuclease; COGs: COG0539 Ribosomal protein S1; InterPro IPR003029; KEGG: sli:Slin_5663 RNA binding S1 domain protein; PFAM: Ribosomal protein S1, RNA binding domain; SPTR: RNA binding S1 domain protein YP_004656481.1 PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1 YP_004656482.1 PFAM: Class III cytochrome C family; Cytochrome c; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR006311; KEGG: dfe:Dfer_3476 molybdopterin oxidoreductase, iron-sulfur binding subunit; SPTR: Molybdopterin oxidoreductase, iron-sulfur binding subunit YP_004656483.1 PFAM: Molydopterin dinucleotide binding domain; COGs: COG5557 Polysulphide reductase; InterPro IPR005614; KEGG: sli:Slin_5666 polysulphide reductase NrfD; PFAM: Polysulphide reductase, NrfD; SPTR: Polysulphide reductase NrfD YP_004656484.1 PFAM: Polysulphide reductase, NrfD; KEGG: dfe:Dfer_3474 quinol:cytochrome c oxidoreductase membrane protein; SPTR: Quinol:cytochrome c oxidoreductase membrane protein YP_004656485.1 PFAM: Protein of unknown function (DUF3341); InterPro IPR003088; KEGG: dfe:Dfer_3473 cytochrome c family protein; PFAM: Cytochrome c, class I; SPTR: Cytochrome c family protein YP_004656486.1 PFAM: Cytochrome c; KEGG: sli:Slin_5669 hypothetical protein; SPTR: uncharacterized protein YP_004656487.1 COGs: COG1622 Heme/copper-type cytochrome/quinol oxidase subunit 2; InterPro IPR011759:IPR002429; KEGG: sli:Slin_5670 cytochrome c oxidase subunit II; PFAM: Cytochrome c oxidase subunit II C-terminal; Cytochrome C oxidase subunit II, transmembrane region; SPTR: Cytochrome c oxidase subunit 2 YP_004656488.1 PFAM: Cytochrome C oxidase subunit II, periplasmic domain; Cytochrome C oxidase subunit II, transmembrane domain; COGs: COG0843 Heme/copper-type cytochrome/quinol oxidase subunit 1; InterPro IPR000883; KEGG: dfe:Dfer_3470 cytochrome-c oxidase; PFAM: Cytochrome c oxidase, subunit I; SPTR: Cytochrome-c oxidase YP_004656489.1 PFAM: Cytochrome C and Quinol oxidase polypeptide I; COGs: COG1612 Uncharacterized protein required for cytochrome oxidase assembly; InterPro IPR003780; KEGG: dfe:Dfer_3469 cytochrome oxidase assembly; PFAM: Cytochrome oxidase assembly; SPTR: Cytochrome oxidase assembly YP_004656490.1 PFAM: Cytochrome oxidase assembly protein; COGs: COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor); HAMAP: Protohaem IX farnesyltransferase; InterPro IPR006369:IPR000537; KEGG: dfe:Dfer_3468 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; SPTR: Protoheme IX farnesyltransferase; TIGRFAM: Protohaem IX farnesyltransferase YP_004656491.1 PFAM: UbiA prenyltransferase; TIGRFAM: protoheme IX farnesyltransferase; COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: dfe:Dfer_3467 cytochrome c oxidase subunit III; PFAM: Cytochrome c oxidase, subunit III; SPTR: Cytochrome c oxidase subunit III YP_004656492.1 PFAM: Cytochrome c oxidase subunit III; COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: dfe:Dfer_3466 cytochrome c oxidase subunit III; PFAM: Cytochrome c oxidase, subunit III; SPTR: Cytochrome c oxidase subunit III YP_004656493.1 PFAM: Cytochrome c oxidase subunit III; KEGG: dfe:Dfer_3465 hypothetical protein; SPTR: uncharacterized protein YP_004656494.1 KEGG: sli:Slin_5677 electron transporter SCO1/SenC; SPTR: Electron transport protein SCO1/SenC YP_004656495.1 COGs: COG2322 membrane protein; InterPro IPR007352; KEGG: dfe:Dfer_3463 protein of unknown function DUF420; PFAM: Protein of unknown function DUF420; SPTR: uncharacterized protein YP_004656496.1 PFAM: Predicted membrane protein (DUF2306); Protein of unknown function (DUF420); KEGG: dfe:Dfer_3462 hypothetical protein; SPTR: uncharacterized protein YP_004656497.1 COGs: COG2890 Methylase of polypeptide chain release factors; InterPro IPR004556:IPR019874:IPR013216; KEGG: dfe:Dfer_4319 modification methylase, HemK family; PFAM: Methyltransferase type 11; SPTR: Modification methylase, HemK family; TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK YP_004656498.1 PFAM: Methyltransferase small domain; TIGRFAM: HemK family methylases; protein-(glutamine-N5) methyltransferase, release factor-specific; KEGG: sli:Slin_5314 hypothetical protein; SPTR: uncharacterized protein YP_004656499.1 InterPro IPR002696; KEGG: sli:Slin_5313 hypothetical protein; PFAM: Protein of unknown function DUF37; SPTR: uncharacterized protein YP_004656500.1 PFAM: Domain of unknown function DUF37; KEGG: sli:Slin_5312 hypothetical protein; SPTR: uncharacterized protein YP_004656501.1 PFAM: TM2 domain; KEGG: mtt:Ftrac_3260 hypothetical protein; SPTR: uncharacterized protein YP_004656502.1 KEGG: sli:Slin_5310 hypothetical protein; SPTR: TM2 domain containing protein YP_004656503.1 PFAM: TM2 domain; KEGG: sli:Slin_5316 hypothetical protein; SPTR: uncharacterized protein YP_004656504.1 COGs: COG0283 Cytidylate kinase; HAMAP: Cytidylate kinase; InterPro IPR003136:IPR011994; KEGG: dfe:Dfer_5748 cytidylate kinase; PFAM: Cytidylate kinase region; SPTR: Cytidylate kinase; TIGRFAM: Cytidylate kinase YP_004656505.1 PFAM: Cytidylate kinase; TIGRFAM: cytidylate kinase; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: sli:Slin_3588 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase YP_004656506.1 PFAM: FAD dependent oxidoreductase; KEGG: dfe:Dfer_5750 surface antigen (D15); SPTR: Surface antigen (D15) YP_004656508.1 InterPro IPR001434:IPR008454; KEGG: sli:Slin_3586 hypothetical protein; PFAM: Protein of unknown function DUF11; Collagen-binding surface protein Cna-like, B region; SPTR: Conserved repeat domain protein; TIGRFAM: Protein of unknown function DUF11 YP_004656509.1 PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain; InterPro IPR019861; KEGG: sli:Slin_3585 hypothetical protein; SPTR: membrane protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes YP_004656510.1 PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_3584 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein YP_004656511.1 PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG4315 conserved hypothetical protein; InterPro IPR005297; KEGG: dfe:Dfer_3560 secreted repeat of unknown function; SPTR: uncharacterized protein YP_004656512.1 PFAM: Secreted repeat of unknown function YP_004656513.1 Prodigal; manually curated YP_004656514.1 PFAM: Transposase DDE domain; COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated YP_004656515.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; Prodigal; manually curated YP_004656517.1 KEGG: bmq:BMQ_2169 beta-galactosidase; SPTR: Beta-galactosidase YP_004656518.1 InterPro IPR019861; KEGG: dfe:Dfer_5751 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes YP_004656519.1 PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein; COGs: COG0567 2-oxoglutarate dehydrogenase complex dehydrogenase (E1); InterPro IPR011603:IPR001017:IPR005475; KEGG: lby:Lbys_3488 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component; PRIAM: Oxoglutarate dehydrogenase (succinyl-transferring); SPTR: 2-oxoglutarate dehydrogenase, E1 subunit; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component YP_004656520.1 PFAM: Dehydrogenase E1 component; Transketolase, pyrimidine binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR006255:IPR000089:IPR004167:IPR001078; KEGG: sli:Slin_5028 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; PRIAM: Dihydrolipoyllysine-residue succinyltransferase; SPTR: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; TIGRFAM: Dihydrolipoamide succinyltransferase YP_004656521.1 PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR006258:IPR013027:IPR004099; KEGG: sli:Slin_6035 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; PRIAM: Dihydrolipoyl dehydrogenase; SPTR: Dihydrolipoyl dehydrogenase; TIGRFAM: Dihydrolipoamide dehydrogenase YP_004656522.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase; COGs: COG4268 McrBC 5-methylcytosine restriction system component; InterPro IPR019292; KEGG: sli:Slin_2471 5-methylcytosine restriction system component-like protein; PFAM: 5-methylcytosine restriction system component-like protein; SPTR: 5-methylcytosine restriction system component-like protein YP_004656523.1 PFAM: McrBC 5-methylcytosine restriction system component; HAMAP: Uncharacterised protein family UPF0090, bacteria; InterPro IPR003728:IPR020790; KEGG: lby:Lbys_1583 hypothetical protein; PFAM: Uncharacterised protein family UPF0090; SPTR: Ribosome maturation factor rimP YP_004656524.1 PFAM: Uncharacterised BCR, YhbC family COG0779; LSM domain; COGs: COG0195 Transcription elongation factor; InterPro IPR010213:IPR013735:IPR004087; KEGG: sli:Slin_1214 NusA antitermination factor; PFAM: Transcription factor NusA, N-terminal; SPTR: NusA antitermination factor; TIGRFAM: Transcription termination factor NusA YP_004656525.1 PFAM: NusA N-terminal domain; TIGRFAM: transcription termination factor NusA; COGs: COG0532 Translation initiation factor 2 (IF-2; GTPase); InterProIPR000178:IPR005225:IPR006847:IPR000795:IPR 004161; KEGG: dfe:Dfer_0032 translation initiation factor IF-2; PFAM: Protein synthesis factor, GTP-binding; Translation initiation factor IF-2, N-terminal; Translation elongation factor EFTu/EF1A, domain 2; SPTR: Translation initiation factor IF-2; TIGRFAM: Initiation factor 2; Small GTP-binding protein YP_004656526.1 PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2; InterPro IPR003675; KEGG: dfe:Dfer_2995 abortive infection protein; PFAM: Abortive infection protein; SPTR: Abortive infection protein YP_004656527.1 PFAM: CAAX amino terminal protease; KEGG: dfe:Dfer_2994 hypothetical protein; SPTR: uncharacterized protein YP_004656528.1 COGs: COG0575 CDP-diglyceride synthetase; InterPro IPR000374; KEGG: dfe:Dfer_2993 phosphatidate cytidylyltransferase; PFAM: Phosphatidate cytidylyltransferase; SPTR: Phosphatidate cytidylyltransferase YP_004656529.1 PFAM: Cytidylyltransferase; KEGG: sli:Slin_2396 hypothetical protein; SPTR: uncharacterized protein YP_004656530.1 COGs: COG2908 conserved hypothetical protein; InterPro IPR004843; KEGG: lby:Lbys_2996 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase YP_004656531.1 PFAM: Calcineurin-like phosphoesterase; InterPro IPR001538; KEGG: shg:Sph21_1644 mannose-6-phosphate isomerase type II; PFAM: Mannose-6-phosphate isomerase, type II, C-terminal; SPTR: Mannose-6-phosphate isomerase YP_004656532.1 PFAM: Mannose-6-phosphate isomerase; KEGG: dfe:Dfer_4996 metal-dependent hydrolase; SPTR: Metal-dependent hydrolase YP_004656533.1 COGs: COG3339 conserved hypothetical protein; InterPro IPR010652; KEGG: sli:Slin_4497 hypothetical protein; PFAM: Protein of unknown function DUF1232; SPTR: uncharacterized protein YP_004656534.1 PFAM: Protein of unknown function (DUF1232); HAMAP: Twin-arginine translocation protein TatA/E; InterPro IPR006312:IPR003369; KEGG: dfe:Dfer_4461 twin-arginine translocation protein, TatA/E family subunit; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106; SPTR: Twin-arginine translocation protein, TatA/E family subunit; TIGRFAM: Twin-arginine translocation protein TatA/E YP_004656535.1 PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family; COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit; InterPro IPR004412:IPR000120; KEGG: sli:Slin_4499 glutamyl-tRNA(Gln) amidotransferase, subunit alpha; PFAM: Amidase; SPTR: Glutamyl-tRNA(Gln) amidotransferase subunit A; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit YP_004656536.1 PFAM: Amidase; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit; COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258:IPR018392:IPR002482; KEGG: dfe:Dfer_4463 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Lytic transglycosylase catalytic YP_004656537.1 PFAM: Transglycosylase SLT domain; LysM domain; COGs: COG1981 membrane protein; InterPro IPR014351:IPR005265; KEGG: lby:Lbys_1279 uncharacterized protein family upf0093; PFAM: Uncharacterised protein family UPF0093; SPTR: Uncharacterized protein family UPF0093; TIGRFAM: Conserved hypothetical protein CHP00701 YP_004656538.1 PFAM: Uncharacterised protein family (UPF0093); TIGRFAM: TIGR00701 family protein; COGs: COG3440 restriction endonuclease; KEGG: sli:Slin_4171 restriction endonuclease; SPTR: restriction endonuclease YP_004656539.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: sli:Slin_5998 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; PRIAM: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; SPTR: Oxidoreductase domain protein YP_004656540.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; InterPro IPR007492; KEGG: cao:Celal_4060 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: two-component response regulator YP_004656541.1 PFAM: LytTr DNA-binding domain; KEGG: chu:CHU_2272 hypothetical protein; SPTR: uncharacterized protein YP_004656542.1 KEGG: tbr:Tb927.7.810 hypothetical protein; SPTR: uncharacterized protein YP_004656543.1 COGs: COG5002 Signal transduction histidine kinase; InterProIPR003660:IPR013767:IPR003661:IPR003594:IPR 000014; KEGG: sli:Slin_0068 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; PAS fold; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; PAS; SPTR: PAS/PAC sensor signal transduction histidine kinase YP_004656544.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR003852; KEGG: cpi:Cpin_3612 osmosensitive K channel signal transduction histidine kinase, sensor subunit KdpD; PFAM: Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal; SPTR: Osmosensitive K channel signal transduction histidine kinase, sensor subunit KdpD YP_004656545.1 PFAM: Universal stress protein family; Osmosensitive K+ channel His kinase sensor domain; KEGG: chu:CHU_1985 hypothetical protein; SPTR: uncharacterized protein YP_004656546.1 COGs: COG2156 K+-transporting ATPase c chain; HAMAP: Potassium transporting ATPase, C subunit; InterPro IPR003820; KEGG: sli:Slin_0065 potassium ABC transporter ATPase; PFAM: Potassium transporting ATPase, C subunit; PRIAM: Potassium-transporting ATPase; SPTR: Potassium-transporting ATPase C chain; TIGRFAM: Potassium transporting ATPase, C subunit YP_004656547.1 PFAM: K+-transporting ATPase, c chain; TIGRFAM: K+-transporting ATPase, C subunit; COGs: COG2216 High-affinity K+ transport system ATPase chain B; HAMAP: Potassium-transporting ATPase, B chain; InterPro IPR006391:IPR001757:IPR008250:IPR005834; KEGG: dfe:Dfer_0376 K+-transporting ATPase, B subunit; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Potassium-transporting ATPase B chain; TIGRFAM: Potassium-transporting ATPase, B chain; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter YP_004656548.1 PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; KEGG: sli:Slin_6261 hypothetical protein; SPTR: uncharacterized protein YP_004656549.1 KEGG: tko:TK0310 hypothetical protein; SPTR: uncharacterized protein YP_004656550.1 COGs: COG2060 K+-transporting ATPase A chain; HAMAP: ATPase, K+ transporting, A subunit; InterPro IPR004623; KEGG: fjo:Fjoh_1975 potassium-transporting ATPase subunit A; PFAM: ATPase, K+ transporting, A subunit; PRIAM: Potassium-transporting ATPase; SPTR: Potassium-transporting ATPase A chain; TIGRFAM: ATPase, K+ transporting, A subunit YP_004656551.1 PFAM: Potassium-transporting ATPase A subunit; TIGRFAM: K+-transporting ATPase, KdpA; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR002078:IPR002197:IPR003593; KEGG: sli:Slin_0059 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family YP_004656552.1 PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; COGs: COG1210 UDP-glucose pyrophosphorylase; InterPro IPR005771:IPR005835; KEGG: dfe:Dfer_4625 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: UTP--glucose-1-phosphate uridylyltransferase; SPTR: UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type YP_004656553.1 PFAM: Nucleotidyl transferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: dfe:Dfer_3653 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28 YP_004656554.1 PFAM: Peptidase M28; COGs: COG0083 Homoserine kinase; HAMAP: Homoserine kinase; InterPro IPR000870:IPR006204:IPR013750; KEGG: dfe:Dfer_3151 homoserine kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal; PRIAM: Homoserine kinase; SPTR: Homoserine kinase; TIGRFAM: Homoserine kinase YP_004656555.1 PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: homoserine kinase; COGs: COG1895 conserved hypothetical protein related to C-terminal domain of eukaryotic chaperone SACSIN; InterPro IPR007842; KEGG: sli:Slin_2849 HEPN domain protein; PFAM: HEPN; SPTR: HEPN domain protein YP_004656556.1 PFAM: HEPN domain; InterPro IPR002934; KEGG: sli:Slin_0018 DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase; SPTR: DNA polymerase beta domain protein region YP_004656557.1 PFAM: Nucleotidyltransferase domain; COGs: COG0657 Esterase/lipase; KEGG: dfe:Dfer_3894 esterase/lipase-like protein; SPTR: Esterase/lipase-like protein YP_004656558.1 PFAM: Prolyl oligopeptidase; COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; InterPro IPR000550; KEGG: sli:Slin_4404 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PRIAM:2-amino-4-hydroxy-6-hydroxymethyldihydropteri dinediphosphokinase; SPTR:2-amino-4-hydroxy-6-hydroxymethyldihydropterid inepyrophosphokinase; TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YP_004656559.1 PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; COGs: COG1231 Monoamine oxidase; InterPro IPR002937; KEGG: ddi:DDB_G0289265 hypothetical protein; PFAM: Amine oxidase; SPTR: Amine oxidase, flavin-containing superfamily YP_004656560.1 PFAM: Flavin containing amine oxidoreductase; COGs: COG0606 ATPase with chaperone activity; InterPro IPR004482:IPR000523:IPR003593; KEGG: sli:Slin_4052 Mg chelatase, subunit ChlI; PFAM: Magnesium chelatase, ChlI subunit; SMART: ATPase, AAA+ type, core; SPTR: Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein YP_004656561.1 PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein; KEGG: dfe:Dfer_3604 hypothetical protein; SPTR: uncharacterized protein YP_004656562.1 COGs: COG0514 Superfamily II DNA helicase; InterProIPR006293:IPR018329:IPR011545:IPR001650:IPR 018982:IPR002121:IPR014001; KEGG: sli:Slin_5963 ATP-dependent DNA helicase RecQ; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type, N-terminal YP_004656563.1 PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; COGs: COG0151 Phosphoribosylamine-glycine ligase; HAMAP: Phosphoribosylglycinamide synthetase; InterPro IPR000115:IPR020562:IPR020561:IPR020560; KEGG: dfe:Dfer_3601 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; PRIAM: Phosphoribosylamine--glycine ligase; SPTR: Phosphoribosylamine/glycine ligase; TIGRFAM: Phosphoribosylglycinamide synthetase YP_004656564.1 PFAM: Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase; COGs: COG1774 Uncharacterized homolog of PSP1; InterPro IPR007557; KEGG: sli:Slin_5965 PSP1 domain protein; PFAM: PSP1, C-terminal; SPTR: PSP1 domain protein YP_004656565.1 PFAM: PSP1 C-terminal conserved region; InterPro IPR001387; KEGG: hor:Hore_07480 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix domain protein YP_004656566.1 PFAM: Helix-turn-helix YP_004656567.1 Prodigal; manually curated YP_004656568.1 PFAM: Vitamin K epoxide reductase YP_004656569.1 PFAM: delta endotoxin; COGs: COG0694 Thioredoxin-like protein and domains; InterPro IPR014824:IPR001075; KEGG: dfe:Dfer_4882 nitrogen-fixing NifU domain protein; PFAM: NIF system FeS cluster assembly, NifU, C-terminal; NIF system FeS cluster assembly, NifU-like scaffold, N-terminal; SPTR: Nitrogen-fixing NifU domain protein YP_004656570.1 PFAM: Scaffold protein Nfu/NifU N terminal; NifU-like domain; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: sli:Slin_4902 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; SPTR: N-acetylmuramoyl-L-alanine amidase YP_004656571.1 PFAM: N-acetylmuramoyl-L-alanine amidase; COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: dfe:Dfer_3636 mammalian cell entry related domain protein; PFAM: Mammalian cell entry related; SPTR: Mammalian cell entry related domain protein YP_004656572.1 PFAM: mce related protein; COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: dfe:Dfer_4444 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein; SPTR: SNARE associated Golgi protein YP_004656573.1 PFAM: SNARE associated Golgi protein; COGs: COG1809 conserved hypothetical protein; InterPro IPR003830; KEGG: dfe:Dfer_4445 phosphosulfolactate synthase; PFAM: (2R)-phospho-3-sulpholactate synthase, ComA; PRIAM: Phosphosulfolactate synthase; SPTR: Phosphosulfolactate synthase YP_004656574.1 PFAM: (2R)-phospho-3-sulfolactate synthase (ComA); COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; InterPro IPR001017:IPR005475:IPR005476; KEGG: dfe:Dfer_3632 transketolase domain protein; PFAM: Transketolase, C-terminal; Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component; SPTR: Transketolase domain protein YP_004656575.1 PFAM: Dehydrogenase E1 component; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; InterPro IPR011467; KEGG: sli:Slin_4915 hypothetical protein; PFAM: Protein of unknown function DUF1573; SPTR: uncharacterized protein YP_004656576.1 PFAM: Protein of unknown function (DUF1573) YP_004656577.1 COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sli:Slin_4919 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase YP_004656578.1 PFAM: Beta-lactamase; COGs: COG2367 Beta-lactamase class A; KEGG: sli:Slin_5194 beta-lactamase; SPTR: Beta-lactamase YP_004656579.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: sli:Slin_2738 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein YP_004656580.1 PFAM: OmpA family; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: sli:Slin_1204 efflux transporter RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD YP_004656581.1 PFAM: HlyD family secretion protein; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_2866 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein YP_004656582.1 PFAM: Outer membrane efflux protein; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: bld:BLi00328 hypothetical protein; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase YP_004656583.1 PFAM: Beta-lactamase; Domain of unknown function (DUF3471); InterPro IPR002860; KEGG: mtt:Ftrac_2455 hypothetical protein; PFAM: BNR repeat; SPTR: BNR/Asp-box repeat domain protein YP_004656584.1 PFAM: BNR/Asp-box repeat; COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: sli:Slin_6519 MATE efflux family protein; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein MatE YP_004656585.1 PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_004656586.1 COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; HAMAP: Chaperone protein dnaJ; InterPro IPR012724:IPR001623:IPR001305:IPR002939; KEGG: dfe:Dfer_4973 chaperone protein DnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; Heat shock protein DnaJ, cysteine-rich region; SMART: Heat shock protein DnaJ, N-terminal; SPTR: Chaperone protein DnaJ; TIGRFAM: Chaperone DnaJ YP_004656587.1 PFAM: DnaJ C terminal region; DnaJ central domain (4 repeats); DnaJ domain; TIGRFAM: chaperone protein DnaJ; COGs: COG0576 Molecular chaperone GrpE (heat shock protein); HAMAP: GrpE nucleotide exchange factor; InterPro IPR000740; KEGG: sli:Slin_1520 GrpE protein; PFAM: GrpE nucleotide exchange factor; SPTR: Protein grpE YP_004656588.1 PFAM: GrpE; InterPro IPR004365:IPR005135; KEGG: sli:Slin_6007 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; Nucleic acid binding, OB-fold, tRNA/helicase-type; SPTR: Endonuclease/exonuclease/phosphatase YP_004656589.1 PFAM: Endonuclease/Exonuclease/phosphatase; KEGG: dfe:Dfer_4541 hypothetical protein; SPTR: uncharacterized protein YP_004656590.1 COGs: COG1452 Organic solvent tolerance protein OstA; KEGG: dfe:Dfer_3634 hypothetical protein; SPTR: uncharacterized protein YP_004656591.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: bch:Bcen2424_5650 sulfatase; PFAM: Sulfatase; SPTR: Sulfatase YP_004656592.1 PFAM: Sulfatase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: dfe:Dfer_5057 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein YP_004656593.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; KEGG: dfe:Dfer_0435 hypothetical protein; SPTR: uncharacterized protein YP_004656594.1 KEGG: dfe:Dfer_0434 hypothetical protein; SPTR: uncharacterized protein YP_004656595.1 InterPro IPR012910:IPR000531; KEGG: sli:Slin_4206 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004656596.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: sli:Slin_4207 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein YP_004656597.1 PFAM: SusD family; COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814; KEGG: dfe:Dfer_0433 aminotransferase class-III; PFAM: Aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: Aminotransferase class-III YP_004656598.1 PFAM: Aminotransferase class-III; COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; HAMAP: Dihydrodipicolinate synthase; InterPro IPR002220:IPR005263; KEGG: dfe:Dfer_5112 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase; SPTR: Dihydrodipicolinate synthase; TIGRFAM: Dihydrodipicolinate synthase subfamily YP_004656599.1 PFAM: Dihydrodipicolinate synthetase; TIGRFAM: dihydrodipicolinate synthase; InterPro IPR000834; KEGG: sli:Slin_2535 peptidase M14 carboxypeptidase A; PFAM: Peptidase M14, carboxypeptidase A; SMART: Peptidase M14, carboxypeptidase A; SPTR: Peptidase M14 carboxypeptidase A YP_004656600.1 PFAM: Zinc carboxypeptidase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: dfe:Dfer_4753 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; PRIAM: Glucose-fructose oxidoreductase; SPTR: Oxidoreductase domain protein YP_004656601.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain YP_004656602.1 KEGG: lby:Lbys_2890 hypothetical protein; SPTR: uncharacterized protein YP_004656603.1 KEGG: cpi:Cpin_0629 hypothetical protein; SPTR: uncharacterized protein YP_004656604.1 PFAM: TAT (twin-arginine translocation) pathway signal sequence; KEGG: cpi:Cpin_0630 hypothetical protein; SPTR: Dessication-associated protein YP_004656605.1 Prodigal; manually curated YP_004656606.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: cpi:Cpin_6476 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004656607.1 PFAM: Carbon-nitrogen hydrolase YP_004656608.1 COGs: COG0376 Catalase (peroxidase I); HAMAP: Catalase-peroxidase haem; InterPro IPR000763:IPR002016; KEGG: sli:Slin_5085 catalase/peroxidase HPI; PFAM: Haem peroxidase, plant/fungal/bacterial; PRIAM: Catalase; SPTR: Catalase-peroxidase; TIGRFAM: Catalase-peroxidase haem YP_004656609.1 PFAM: Peroxidase; TIGRFAM: catalase/peroxidase HPI; InterPro IPR003838; KEGG: sli:Slin_4641 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004656610.1 PFAM: Predicted permease; COGs: COG0587 DNA polymerase III alpha subunit; InterProIPR003141:IPR004013:IPR011708:IPR004365:IPR 004805; KEGG: dfe:Dfer_0427 DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: DNA-directed DNA polymerase; SMART: Polymerase/histidinol phosphatase, N-terminal; SPTR: DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit YP_004656611.1 PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc) YP_004656612.1 KEGG: mar:MAE_51780 hypothetical protein; SPTR: uncharacterized protein YP_004656613.1 manually curated YP_004656614.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG3808 Inorganic pyrophosphatase; HAMAP: Pyrophosphate-energized proton pump; InterPro IPR004131:IPR006665; KEGG: lby:Lbys_1603 v-type h(+)-translocating pyrophosphatase; PFAM: Inorganic H+ pyrophosphatase; Outer membrane protein, OmpA/MotB, C-terminal; PRIAM: Inorganic diphosphatase; SPTR: V-type H(+)-translocating pyrophosphatase; TIGRFAM: Inorganic H+ pyrophosphatase YP_004656615.1 PFAM: Inorganic H+ pyrophosphatase; OmpA family; TIGRFAM: vacuolar-type H(+)-translocating pyrophosphatase; KEGG: sli:Slin_3024 hypothetical protein; SPTR: uncharacterized protein YP_004656616.1 Prodigal; manually curated YP_004656617.1 PFAM: Polyprenyl synthetase; COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: sli:Slin_3007 patatin; PFAM: Patatin; SPTR: Patatin YP_004656618.1 PFAM: Patatin-like phospholipase; InterPro IPR000182; KEGG: sli:Slin_1389 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase YP_004656619.1 PFAM: Acetyltransferase (GNAT) family; InterPro IPR001087; KEGG: sli:Slin_1223 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family YP_004656620.1 PFAM: GDSL-like Lipase/Acylhydrolase YP_004656621.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR001789:IPR001610:IPR003661:IPR003594:IPR 000014; KEGG: sli:Slin_1036 multi-sensor signal transduction histidine kinase; PFAM: Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SMART: Signal transduction response regulator, receiver region; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS YP_004656622.1 PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0642 Signal transduction histidine kinase; InterProIPR003660:IPR003018:IPR003661:IPR003594:IPR 001789:IPR007891; KEGG: sli:Slin_1035 GAF sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; CHASE3; HAMP linker domain; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; GAF; Signal transduction response regulator, receiver region; SPTR: GAF sensor hybrid histidine kinase YP_004656623.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; CHASE3 domain; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: sli:Slin_1034 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein YP_004656624.1 PFAM: Response regulator receiver domain; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterPro IPR000780; KEGG: dfe:Dfer_0391 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase, CheR-type; PRIAM: Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase, CheR-type; SPTR: MCP methyltransferase, CheR-type YP_004656625.1 PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain; COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; InterPro IPR000673; KEGG: sli:Slin_1032 CheB methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; PRIAM: Protein-glutamate methylesterase; SPTR: CheB methylesterase YP_004656626.1 PFAM: CheB methylesterase; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: cpi:Cpin_3744 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein YP_004656627.1 PFAM: Response regulator receiver domain; KEGG: dfe:Dfer_4537 FG-GAP repeat-containing protein; SPTR: FG-GAP repeat-containing protein YP_004656628.1 COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017; KEGG: cpi:Cpin_4922 hypothetical protein; PFAM: Cysteine-rich region, CCG; SPTR: uncharacterized protein YP_004656629.1 PFAM: Cysteine-rich domain; COGs: COG1139 conserved hypothetical protein containing a ferredoxin-like domain; InterPro IPR003741; KEGG: cpi:Cpin_4921 hypothetical protein; PFAM: Protein of unknown function DUF162; SPTR: uncharacterized protein YP_004656630.1 PFAM: Domain of unknown function (DUF3390); Uncharacterised ACR, YkgG family COG1556; TIGRFAM: iron-sulfur cluster-binding protein; COGs: COG1556 conserved hypothetical protein; InterPro IPR003741; KEGG: phe:Phep_2948 hypothetical protein; PFAM: Protein of unknown function DUF162; SPTR: uncharacterized protein YP_004656631.1 PFAM: Uncharacterised ACR, YkgG family COG1556; KEGG: dfe:Dfer_4410 hypothetical protein; SPTR: uncharacterized protein YP_004656632.1 PFAM: Neutral/alkaline non-lysosomal ceramidase YP_004656633.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: ssm:Spirs_3266 two component transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: uncharacterized protein YP_004656634.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: cno:NT01CX_0386 transcriptional regulatory protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004656635.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004656636.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR003594; KEGG: sli:Slin_1040 response regulator receiver sensor signal transduction histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; SPTR: Response regulator receiver sensor signal transduction histidine kinase YP_004656637.1 PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR018060:IPR000005; KEGG: sli:Slin_2666 AraC family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Helix-turn-helix, AraC type; SMART: Signal transduction response regulator, receiver region; Helix-turn-helix, AraC domain; SPTR: Two component transcriptional regulator, AraC family YP_004656638.1 PFAM: Response regulator receiver domain; Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: tva:TVAG_355490 viral A-type inclusion protein YP_004656639.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 013767:IPR013655:IPR013656; KEGG: sli:Slin_0618 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold-4; PAS fold-3; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS YP_004656640.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system; InterPro IPR005151:IPR011659; KEGG: cao:Celal_1779 peptidase S41; PFAM: Peptidase S41; WD40-like Beta Propeller; SMART: Peptidase S41; SPTR: Peptidase S41 YP_004656641.1 PFAM: WD40-like Beta Propeller Repeat; Peptidase S41; COGs: COG3569 Topoisomerase IB; KEGG: psn:Pedsa_1825 DNA topoisomerase; SPTR: DNA topoisomerase IB (Poxvirus type) YP_004656642.1 PFAM: Eukaryotic DNA topoisomerase I, catalytic core; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_0261 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004656643.1 PFAM: short chain dehydrogenase; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003593:IPR003439:IPR013611; KEGG: sli:Slin_0799 ABC transporter; PFAM: ABC transporter-like; Transport-associated OB, type 2; PRIAM: Polyamine-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein YP_004656644.1 PFAM: ABC transporter; TOBE domain; InterPro IPR000834; KEGG: lby:Lbys_0651 peptidase M14 carboxypeptidase A; PFAM: Peptidase M14, carboxypeptidase A; SMART: Peptidase M14, carboxypeptidase A; SPTR: Peptidase M14 carboxypeptidase A YP_004656645.1 PFAM: Zinc carboxypeptidase; InterPro IPR000834; KEGG: lby:Lbys_0650 peptidase M14 carboxypeptidase A; PFAM: Peptidase M14, carboxypeptidase A; SMART: Peptidase M14, carboxypeptidase A; SPTR: Peptidase M14 carboxypeptidase A YP_004656646.1 PFAM: Zinc carboxypeptidase; COGs: COG3653 N-acyl-D-aspartate/D-glutamate deacylase; InterPro IPR006680:IPR012855; KEGG: sli:Slin_6046 D-aminoacylase domain protein; PFAM: D-aminoacylase, C-terminal; Amidohydrolase 1; PRIAM: N-acyl-D-amino-acid deacylase; SPTR: D-aminoacylase domain protein YP_004656647.1 PFAM: D-aminoacylase, C-terminal region; Amidohydrolase; COGs: COG4585 Signal transduction histidine kinase; InterPro IPR019734:IPR003594:IPR001440:IPR011712; KEGG: lby:Lbys_2994 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; Tetratricopeptide TPR-1; SMART: ATP-binding region, ATPase-like; Tetratricopeptide repeat; SPTR: Histidine kinase YP_004656648.1 PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro IPR011637; KEGG: mxa:MXAN_6633 hypothetical protein; PFAM: DoxX; SPTR: membrane protein YP_004656649.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: chu:CHU_0605 b-glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: B-glycosyltransferase, glycosyltransferase 2 protein YP_004656650.1 PFAM: Glycosyl transferase 2; COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544:IPR005786; KEGG: dfe:Dfer_3303 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV; PRIAM: Branched-chain-amino-acid transaminase; SPTR: Branched-chain amino acid aminotransferase; TIGRFAM: Branched-chain amino acid aminotransferase II YP_004656651.1 PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group II YP_004656652.1 COGs: COG2096 conserved hypothetical protein; InterPro IPR002779:IPR017858; KEGG: dfe:Dfer_3302 ATP/cobalamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type; PRIAM: Cob(I)yrinic acid a,c-diamide adenosyltransferase; SPTR: ATP/cobalamin adenosyltransferase; TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal YP_004656653.1 PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase; KEGG: sli:Slin_6457 hypothetical protein; SPTR: uncharacterized protein YP_004656654.1 InterPro IPR008538; KEGG: dfe:Dfer_4308 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein YP_004656655.1 PFAM: Protein of unknown function (DUF820); COGs: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; InterPro IPR000581; KEGG: dfe:Dfer_4563 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; PRIAM: Dihydroxy-acid dehydratase; SPTR: Dihydroxy-acid dehydratase YP_004656656.1 PFAM: Dehydratase; TIGRFAM: dihydroxy-acid dehydratase; COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: sli:Slin_0096 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; PRIAM: Exopolyphosphatase; SPTR: Ppx/GppA phosphatase YP_004656657.1 PFAM: Ppx/GppA phosphatase; HAMAP: Ribosomal protein S21; InterPro IPR001911; KEGG: sli:Slin_0097 ribosomal protein S21; PFAM: Ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: Ribosomal protein S21 YP_004656658.1 PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; COGs: COG2350 conserved hypothetical protein; InterPro IPR005545; KEGG: sli:Slin_2848 YCII-related protein; PFAM: YCII-related; SPTR: YCII-related protein YP_004656659.1 PFAM: YCII-related domain; COGs: COG0465 ATP-dependent Zn protease; InterProIPR003593:IPR011546:IPR003959:IPR000642:IPR 005936; KEGG: sli:Slin_3001 ATP-dependent metalloprotease FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; PRIAM: Microtubule-severing ATPase; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent zinc metalloprotease FtsH; TIGRFAM: Peptidase M41, FtsH YP_004656660.1 PFAM: Peptidase M41; ATPase associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH; COGs: COG0799 Iojap protein; InterPro IPR004394; KEGG: dfe:Dfer_5041 iojap-like protein; PFAM: Iojap-related protein; SPTR: Iojap-like protein; TIGRFAM: Iojap-related protein YP_004656661.1 PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-like ribosome-associated protein; COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR004143:IPR003142:IPR004408; KEGG: sli:Slin_3003 biotin/acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Biotin protein ligase, C-terminal; SPTR: Biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase YP_004656662.1 PFAM: Biotin/lipoate A/B protein ligase; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region; InterPro IPR019850; KEGG: sli:Slin_4895 gliding motility-associated lipoprotein GldD; SPTR: Gliding motility-associated lipoprotein GldD; TIGRFAM: Gliding motility-associated lipoprotein, GldD YP_004656663.1 TIGRFAM: gliding motility-associated lipoprotein GldD; COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537; KEGG: sli:Slin_3485 UbiA prenyltransferase; PFAM: UbiA prenyltransferase; PRIAM: Geranylgeranylglycerol-phosphate geranylgeranyltransferase; SPTR: UbiA prenyltransferase YP_004656664.1 PFAM: UbiA prenyltransferase; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dfe:Dfer_2479 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1 YP_004656665.1 PFAM: Glycosyl transferases group 1; TIGRFAM: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA; COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR008334; KEGG: sli:Slin_4341 5'-nucleotidase domain protein; PFAM: 5'-Nucleotidase, C-terminal; SPTR: 5'-Nucleotidase domain protein YP_004656666.1 PFAM: 5'-nucleotidase, C-terminal domain; COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR004843; KEGG: sli:Slin_4342 metallophosphoesterase; PFAM: Metallophosphoesterase; PRIAM: 5'-nucleotidase; SPTR: Metallophosphoesterase YP_004656667.1 PFAM: Calcineurin-like phosphoesterase; COGs: COG2235 Arginine deiminase; InterPro IPR003198; KEGG: sli:Slin_0192 arginine deiminase; PFAM: Amidinotransferase; PRIAM: Arginine deiminase; SPTR: Arginine deiminase YP_004656668.1 PFAM: Amidinotransferase; InterPro IPR008538; KEGG: sli:Slin_5071 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein YP_004656669.1 PFAM: Protein of unknown function (DUF820); COGs: COG4874 Uncharacterized protein containing a pentein-type domain; KEGG: sli:Slin_0193 hypothetical protein; SPTR: uncharacterized protein YP_004656670.1 COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterPro IPR011127:IPR011095; KEGG: dfe:Dfer_4937 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase, N-terminal; D-alanine--D-alanine ligase, C-terminal; PRIAM: D-alanine--D-alanine ligase; SPTR: D-alanine--D-alanine ligase YP_004656671.1 PFAM: D-ala D-ala ligase N-terminus; D-ala D-ala ligase C-terminus; TIGRFAM: D-alanine--D-alanine ligase; COGs: COG2367 Beta-lactamase class A; InterPro IPR001466; KEGG: ssm:Spirs_2202 beta-lactamase; PFAM: Beta-lactamase-related; PRIAM: Beta-lactamase; SPTR: Beta-lactamase YP_004656672.1 PFAM: Beta-lactamase; KEGG: dfe:Dfer_4669 hypothetical protein; SPTR: uncharacterized protein YP_004656673.1 COGs: COG0504 CTP synthase (UTP-ammonia lyase); HAMAP: CTP synthase; InterPro IPR004468:IPR017456:IPR000991; KEGG: dfe:Dfer_1151 CTP synthetase; PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; PRIAM: CTP synthase; SPTR: CTP synthase; TIGRFAM: CTP synthase YP_004656674.1 PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase; COGs: COG0117 Pyrimidine deaminase; InterPro IPR002125:IPR002734:IPR004794; KEGG: sli:Slin_2937 riboflavin biosynthesis protein RibD; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding; PRIAM: Diaminohydroxyphosphoribosylaminopyrimidine deaminase., 5-amino-6-(5-phosphoribosylamino)uracil reductase; SPTR: Riboflavin biosynthesis protein RibD; TIGRFAM: Riboflavin biosynthesis protein RibD YP_004656675.1 PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD; COGs: COG0287 Prephenate dehydrogenase; InterPro IPR003099; KEGG: sli:Slin_6542 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; PRIAM: Prephenate dehydrogenase; SPTR: Prephenate dehydrogenase YP_004656676.1 PFAM: Prephenate dehydrogenase; COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022; KEGG: dfe:Dfer_2974 carboxyl transferase; PFAM: Carboxyl transferase; PRIAM: Propionyl-CoA carboxylase; SPTR: Propionyl-CoA carboxylase beta chain YP_004656677.1 PFAM: Carboxyl transferase domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: msi:Msm_0775 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004656678.1 COGs: COG3485 Protocatechuate 3 4-dioxygenase beta subunit; InterPro IPR000627; KEGG: rbi:RB2501_01006 hypothetical protein; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; SPTR: uncharacterized protein YP_004656679.1 PFAM: Dioxygenase; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR008274:IPR006311; KEGG: dfe:Dfer_0732 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; PRIAM: Aldehyde dehydrogenase (pyrroloquinoline-quinone); SPTR: Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding YP_004656680.1 PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; InterPro IPR001041:IPR002888; KEGG: sli:Slin_6243 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; Ferredoxin; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: (2Fe-2S)-binding domain protein YP_004656681.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: osp:Odosp_1109 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator YP_004656682.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG0656 Aldo/keto reductase related to diketogulonate reductase; InterPro IPR001395; KEGG: rca:Rcas_1051 2,5-didehydrogluconate reductase; PFAM: Aldo/keto reductase; PRIAM: Methylglyoxal reductase (NADPH-dependent); SPTR: aldo/keto reductase YP_004656683.1 PFAM: Aldo/keto reductase; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR008274:IPR006311; KEGG: rbi:RB2501_01021 isoquinoline 1-oxidoreductase subunit beta; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: Isoquinoline 1-oxidoreductase, beta subunit YP_004656684.1 PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; COGs: COG1280 threonine efflux protein; InterPro IPR001123; KEGG: tin:Tint_2220 lysine exporter protein (LysE/YggA); PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: Lysine exporter protein (LYSE/YGGA) YP_004656685.1 PFAM: LysE type translocator; KEGG: sli:Slin_2427 hypothetical protein; SPTR: uncharacterized protein YP_004656686.1 COGs: COG1804 acyl-CoA transferase/carnitine dehydratase; InterPro IPR003673; KEGG: sru:SRU_2333 L-carnitine dehydratase; PFAM: CoA-transferase III; SPTR: Acyl CoA transferase/carnitine dehydratase YP_004656687.1 PFAM: CoA-transferase III; Prodigal; manually curated YP_004656689.1 KEGG: shg:Sph21_1894 hypothetical protein; SPTR: DNA-binding protein YP_004656690.1 PFAM: HTH domain YP_004656691.1 COGs: COG0237 Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase; InterPro IPR001977; KEGG: sli:Slin_6325 dephospho-CoA kinase; PRIAM: Dephospho-CoA kinase; SPTR: Dephospho-CoA kinase; TIGRFAM: Dephospho-CoA kinase YP_004656692.1 PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; KEGG: sli:Slin_6326 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004656693.1 COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: sli:Slin_6327 preprotein translocase, YajC subunit; PFAM: YajC; SPTR: Preprotein translocase, YajC subunit; TIGRFAM: YajC YP_004656694.1 PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit; InterPro IPR011467; KEGG: sli:Slin_6328 hypothetical protein; PFAM: Protein of unknown function DUF1573; SPTR: uncharacterized protein YP_004656695.1 PFAM: Protein of unknown function (DUF1573); KEGG: dfe:Dfer_4925 hypothetical protein; SPTR: uncharacterized protein YP_004656696.1 COGs: COG0781 Transcription termination factor; HAMAP: N utilization substance protein B-like protein; InterPro IPR006027:IPR011605; KEGG: dfe:Dfer_4924 NusB antitermination factor; PFAM: NusB/RsmB/TIM44; SPTR: NusB antitermination factor; TIGRFAM: NusB antitermination factor YP_004656697.1 PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB; COGs: COG0468 RecA/RadA recombinase; HAMAP: DNA recombination and repair protein RecA; InterPro IPR003593:IPR013765; KEGG: dfe:Dfer_0005 RecA protein; PFAM: DNA recombination and repair protein RecA; SMART: ATPase, AAA+ type, core; SPTR: Protein RecA; TIGRFAM: DNA recombination and repair protein RecA YP_004656698.1 PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA; COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: sli:Slin_3527 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase domain protein YP_004656699.1 PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR001732:IPR014026:IPR014027:IPR017476; KEGG: dfe:Dfer_3001 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: Nucleotide sugar dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase YP_004656700.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase, central domain; UDP-glucose/GDP-mannose dehydrogenase, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_3000 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucuronate decarboxylase; SPTR: NAD-dependent epimerase/dehydratase YP_004656701.1 PFAM: NAD dependent epimerase/dehydratase; COGs: COG1555 DNA uptake protein and related DNA-binding protein; KEGG: sli:Slin_1689 DNA uptake protein and related DNA-binding protein-like protein; SPTR: DNA uptake protein and related DNA-binding protein-like protein YP_004656702.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region; COGs: COG0423 Glycyl-tRNA synthetase (class II); InterPro IPR002314:IPR004154:IPR002315; KEGG: dfe:Dfer_4906 glycyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Anticodon-binding; SPTR: Glycyl-tRNA synthetase; TIGRFAM: Glycyl-tRNA synthetase, alpha2 dimer YP_004656703.1 PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: glycyl-tRNA synthetase, dimeric type; KEGG: sli:Slin_6509 hypothetical protein; SPTR: uncharacterized protein YP_004656704.1 COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: sli:Slin_6512 PadR family transcriptional regulator; PFAM: Transcriptional regulator PadR N-terminal-like; SPTR: Transcriptional regulator, PadR-like family YP_004656705.1 PFAM: Transcriptional regulator PadR-like family; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: dfe:Dfer_4778 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein YP_004656706.1 PFAM: Protein of unknown function (DUF820); COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: sli:Slin_1620 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004656707.1 PFAM: Major Facilitator Superfamily; InterPro IPR003544; KEGG: sli:Slin_1448 cytochrome c biogenesis protein CcmB; PFAM: Cytochrome c-type biogenesis protein CcmB; SPTR: Cytochrome c-type biogenesis protein CcmB YP_004656708.1 PFAM: CcmB protein; InterPro IPR002541; KEGG: sli:Slin_1447 cytochrome c assembly protein; PFAM: Cytochrome c assembly protein; SPTR: Cytochrome c assembly protein YP_004656709.1 PFAM: Cytochrome C assembly protein; KEGG: sli:Slin_1446 hypothetical protein; SPTR: uncharacterized protein YP_004656710.1 KEGG: ana:asr0148 hypothetical protein; SPTR: Asr0148 protein YP_004656711.1 PFAM: Protein of unknown function (DUF2281); COGs: COG3744 conserved hypothetical protein; InterPro IPR002716; KEGG: cch:Cag_0280 hypothetical protein; PFAM: PilT protein, N-terminal; SPTR: uncharacterized protein YP_004656712.1 PFAM: PIN domain; KEGG: dfe:Dfer_5081 hypothetical protein; SPTR: uncharacterized protein YP_004656713.1 PFAM: CcmE; COGs: COG1138 Cytochrome c biogenesis factor; InterPro IPR002541; KEGG: dfe:Dfer_5080 cytochrome c assembly protein; PFAM: Cytochrome c assembly protein; SPTR: Cytochrome c assembly protein; manually curated YP_004656714.1 PFAM: Cytochrome C assembly protein; TIGRFAM: c-type cytochrome biogenesis protein CcmF; KEGG: sli:Slin_0299 hypothetical protein; SPTR: uncharacterized protein YP_004656715.1 KEGG: dfe:Dfer_3944 hypothetical protein; SPTR: uncharacterized protein YP_004656716.1 COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006140; KEGG: sli:Slin_2228 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; SPTR: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein YP_004656717.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YP_004656718.1 KEGG: sli:Slin_4490 hypothetical protein; SPTR: uncharacterized protein YP_004656719.1 COGs: COG4731 conserved hypothetical protein; InterPro IPR019223; KEGG: psn:Pedsa_0847 protein of unknown function DUF2147; PFAM: Protein of unknown function DUF2147; SPTR: uncharacterized protein YP_004656720.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2147); KEGG: dfe:Dfer_0343 hypothetical protein; SPTR: uncharacterized protein YP_004656721.1 KEGG: sli:Slin_3991 hypothetical protein; SPTR: uncharacterized protein YP_004656722.1 KEGG: sli:Slin_3992 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004656723.1 InterPro IPR012910:IPR000531; KEGG: sli:Slin_3993 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004656724.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; Prodigal; manually curated YP_004656725.1 PFAM: NAD dependent epimerase/dehydratase YP_004656726.1 COGs: COG5654 conserved hypothetical protein; InterPro IPR014914; KEGG: cts:Ctha_2678 RES domain-containing protein; PFAM: RES; SPTR: uncharacterized protein YP_004656727.1 PFAM: RES domain; COGs: COG5642 conserved hypothetical protein; InterPro IPR011979; KEGG: zpr:ZPR_0343 hypothetical protein; PFAM: Conserved hypothetical protein CHP02293; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02293 YP_004656728.1 PFAM: Protein of unknown function (DUF2384); TIGRFAM: toxin-antitoxin system antitoxin component, TIGR02293 family; InterPro IPR003409; KEGG: ptm:GSPATT00011040001 hypothetical protein; PFAM: MORN motif; SPTR: Chromosome undetermined scaffold_29, whole genome shotgun sequence YP_004656729.1 COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: mev:Metev_2271 APHP domain-containing protein; SPTR: WD40-like Beta Propeller YP_004656730.1 PFAM: WD40-like Beta Propeller Repeat; InterPro IPR001846; KEGG: sur:STAUR_4950 hypothetical protein; PFAM: von Willebrand factor, type D; SPTR: Genome sequencing data, contig C314 YP_004656731.1 PFAM: von Willebrand factor type D domain YP_004656732.1 COGs: COG3920 Signal transduction histidine kinase; InterPro IPR011495:IPR003594; KEGG: dfe:Dfer_1629 signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor region; ATP-binding region, ATPase-like; SPTR: Signal transduction histidine kinase YP_004656733.1 PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_1630 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004656734.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG4354 bile acid beta-glucosidase; InterPro IPR006775; KEGG: sli:Slin_6449 hypothetical protein; SPTR: uncharacterized protein YP_004656735.1 PFAM: beta-Glucocerebrosidase 2 N terminal; Protein of unknown function, DUF608; COGs: COG0388 amidohydrolase; InterPro IPR000182:IPR003010; KEGG: cts:Ctha_0190 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; GCN5-related N-acetyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004656736.1 PFAM: Acetyltransferase (GNAT) family; Carbon-nitrogen hydrolase; KEGG: dfe:Dfer_4533 hypothetical protein; SPTR: uncharacterized protein YP_004656737.1 KEGG: mtt:Ftrac_2027 hypothetical protein; SPTR: uncharacterized protein YP_004656738.1 KEGG: rbi:RB2501_03795 hypothetical protein; SPTR: uncharacterized protein YP_004656739.1 COGs: COG3590 metalloendopeptidase; InterPro IPR008753:IPR018497; KEGG: sli:Slin_1065 endothelin-converting enzyme 1; PFAM: Peptidase M13; Peptidase M13, neprilysin, C-terminal; PRIAM: Endothelin-converting enzyme 1; SPTR: Endothelin-converting enzyme 1 YP_004656740.1 PFAM: Peptidase M13; KEGG: sli:Slin_1514 hypothetical protein; SPTR: uncharacterized protein YP_004656741.1 KEGG: dfe:Dfer_3041 secreted protein; SPTR: secreted protein YP_004656742.1 PFAM: Glycosyl hydrolases family 2, TIM barrel domain; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: cpi:Cpin_3128 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004656743.1 PFAM: Glycosyl transferase 2; Glycosyl hydrolase 26; KEGG: ilo:IL0647 hypothetical protein; SPTR: uncharacterized protein YP_004656745.1 COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: cao:Celal_2798 transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase YP_004656746.1 PFAM: Transposase; KEGG: dfe:Dfer_4027 hypothetical protein; SPTR: uncharacterized protein YP_004656748.1 Prodigal; manually curated YP_004656749.1 TIGRFAM: alpha-glucan phosphorylases; InterPro IPR000182; KEGG: lby:Lbys_1327 diamine N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase (GNAT) family protein YP_004656750.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: cpi:Cpin_1321 glycosyl transferase 39; PFAM: Glycosyl transferase, family 39; SPTR: Dolichyl-phosphate-mannose-protein mannosyltransferase YP_004656751.1 InterPro IPR000326; KEGG: sli:Slin_5970 phosphoesterase PA-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: Phosphoesterase PA-phosphatase related protein YP_004656752.1 PFAM: PAP2 superfamily; KEGG: sli:Slin_4010 hypothetical protein; SPTR: uncharacterized protein YP_004656753.1 InterPro IPR005651; KEGG: mtt:Ftrac_2331 hypothetical protein; PFAM: Protein of unknown function DUF343; SPTR: uncharacterized protein YP_004656754.1 PFAM: Trm112p-like protein; COGs: COG0352 Thiamine monophosphate synthase; InterPro IPR003733; KEGG: ran:Riean_0486 thiamine monophosphate synthase; PFAM: Thiamine monophosphate synthase; SPTR: Thiamine monophosphate synthase YP_004656755.1 PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase; COGs: COG0309 Hydrogenase maturation factor; InterPro IPR000728:IPR010918; KEGG: ran:Riean_0487 air synthase related protein domain protein; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; SPTR: AIR synthase domain protein YP_004656756.1 PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: mtt:Ftrac_2328 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: SAM-dependent methyltransferase YP_004656757.1 PFAM: Methyltransferase domain; COGs: COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor; KEGG: sli:Slin_6617 oxidoreductase; SPTR: Oxidoreductase YP_004656758.1 PFAM: BNR/Asp-box repeat; COGs: COG0793 Periplasmic protease; InterPro IPR005151; KEGG: sli:Slin_1888 peptidase S41; PFAM: Peptidase S41; SMART: Peptidase S41; SPTR: Peptidase S41 YP_004656759.1 PFAM: Peptidase S41; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_3760 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related YP_004656760.1 PFAM: ABC transporter YP_004656761.1 KEGG: bco:Bcell_1176 hypothetical protein; SPTR: uncharacterized protein YP_004656762.1 KEGG: dfe:Dfer_3762 tetratricopeptide domain protein; SPTR: Tetratricopeptide domain protein YP_004656764.1 COGs: COG1538 Outer membrane protein; KEGG: cpi:Cpin_7078 outer membrane protein; SPTR: Outer membrane efflux protein YP_004656765.1 PFAM: Outer membrane efflux protein; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: sli:Slin_4444 cation/multidrug efflux pump-like protein; PFAM: Acriflavin resistance protein; SPTR: Cation/multidrug efflux pump-like protein YP_004656766.1 PFAM: AcrB/AcrD/AcrF family; Prodigal; manually curated YP_004656768.1 InterPro IPR007367; KEGG: dfe:Dfer_5692 protein of unknown function DUF433; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein YP_004656769.1 PFAM: Protein of unknown function (DUF433); COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sli:Slin_4438 efflux transporter RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD YP_004656770.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792; KEGG: lby:Lbys_1269 two component transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: Two component transcriptional regulator, LuxR family protein YP_004656771.1 PFAM: Bacterial regulatory proteins, luxR family YP_004656778.1 KEGG: ppn:Palpr_1115 hypothetical protein; SPTR: uncharacterized protein YP_004656779.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: sli:Slin_4437 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein YP_004656780.1 PFAM: AcrB/AcrD/AcrF family; InterPro IPR007452; KEGG: dfe:Dfer_3011 hypothetical protein; PFAM: Protein of unknown function DUF490; SPTR: uncharacterized protein YP_004656781.1 PFAM: Family of unknown function (DUF490); COGs: COG0533 Metal-dependent protease with possible chaperone activity; HAMAP: O-sialoglycoprotein endopeptidase; InterPro IPR000905:IPR017861; KEGG: dfe:Dfer_3012 metalloendopeptidase, glycoprotease; PFAM: Peptidase M22, glycoprotease; PRIAM: O-sialoglycoprotein endopeptidase; SPTR: Probable O-sialoglycoprotein endopeptidase; TIGRFAM: glycoprotease GCP; Peptidase M22, glycoprotease, subgroup YP_004656782.1 PFAM: Glycoprotease; TIGRFAM: glycoprotease GCP; metallohydrolase, glycoprotease/Kae1 family; universal bacterial protein YeaZ YP_004656783.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR003018:IPR000014:IPR001610:IPR003661:IPR 003594:IPR001789:IPR013655:IPR013767:IPR013656; KEGG: sli:Slin_0621 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; PAS fold-3; PAS fold; PAS fold-4; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; GAF; PAC motif; Signal transduction response regulator, receiver region; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS YP_004656784.1 PFAM: GAF domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: dfe:Dfer_3162 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004656785.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG3386 Gluconolactonase; InterPro IPR013658; KEGG: sli:Slin_0076 SMP-30/gluconolaconase/LRE domain protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; SPTR: SMP-30/Gluconolaconase/LRE domain protein YP_004656786.1 PFAM: SMP-30/Gluconolaconase/LRE-like region YP_004656787.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: sli:Slin_0503 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: Two-component system response regulator, LytR/AlgR family YP_004656788.1 PFAM: LytTr DNA-binding domain; InterPro IPR006626; KEGG: gsu:GSU0754 fibronectin type III domain-containing protein; SPTR: Outer membrane autotransporter YP_004656789.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_6125 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004656790.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: sli:Slin_6126 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase YP_004656791.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004656792.1 COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: mtt:Ftrac_2592 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; SPTR: Histone family protein DNA-binding protein YP_004656793.1 PFAM: Bacterial DNA-binding protein; KEGG: osp:Odosp_1433 hypothetical protein; SPTR: uncharacterized protein YP_004656794.1 InterPro IPR000595; KEGG: mtt:Ftrac_2031 transcriptional regulator, crp/fnr family; PFAM: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family YP_004656795.1 PFAM: Cyclic nucleotide-binding domain YP_004656796.1 COGs: COG1171 Threonine dehydratase; InterPro IPR001926; KEGG: sli:Slin_1010 pyridoxal-5'-phosphate-dependent protein subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Serine racemase; SPTR: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_004656797.1 PFAM: Pyridoxal-phosphate dependent enzyme; COGs: COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA; InterPro IPR010386; KEGG: dfe:Dfer_2373 tRNA-hydroxylase; PFAM: tRNA--hydroxylase; SPTR: tRNA-hydroxylase YP_004656798.1 PFAM: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); COGs: COG1252 NADH dehydrogenase FAD-containing subunit; InterPro IPR013027; KEGG: sli:Slin_5734 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: NADH dehydrogenase (ubiquinone); SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004656799.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; manually curated YP_004656800.1 KEGG: ral:Rumal_0689 hypothetical protein; SPTR: ATP/GTP-binding protein YP_004656801.1 InterPro IPR001387; KEGG: hdu:HD1096 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix domain protein YP_004656802.1 PFAM: Helix-turn-helix YP_004656804.1 InterPro IPR002104; KEGG: bvu:BVU_2095 transposase; PFAM: Integrase, catalytic core, phage; SPTR: Site-specific recombinase, phage integrase YP_004656805.1 PFAM: Phage integrase; COGs: COG5545 P-loop ATPase and inactivated derivatives; KEGG: fps:FP0491 hypothetical protein; SPTR: uncharacterized protein YP_004656806.1 PFAM: Virulence-associated protein E; InterPro IPR002694; KEGG: pgi:PG0841 mobilizable transposon, excision protein, SPTR: Mobilizable transposon, excision protein YP_004656807.1 PFAM: CHC2 zinc finger YP_004656808.1 InterPro IPR000477; KEGG: fjo:Fjoh_2333 hypothetical protein; PFAM: RNA-directed DNA polymerase (reverse transcriptase); SPTR: uncharacterized protein YP_004656809.1 PFAM: Reverse transcriptase (RNA-dependent DNA polymerase) YP_004656811.1 PFAM: Acyltransferase; InterPro IPR008207; KEGG: sli:Slin_3142 multi-sensor hybrid histidine kinase; PFAM: Signal transduction histidine kinase, phosphotransfer (Hpt) region; SPTR: Sensory box histidine kinase/response regulator YP_004656812.1 PFAM: Hpt domain; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR003593:IPR002078:IPR002197; KEGG: sli:Slin_3143 two component, sigma54 specific, fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; SPTR: Nitrogen regulation protein NR(I) YP_004656813.1 PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: dfe:Dfer_5736 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004656814.1 PFAM: Cupin domain; Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR010496; KEGG: sli:Slin_0438 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein YP_004656815.1 PFAM: Domain of Unknown Function (DUF1080); COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: sli:Slin_0047 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004656816.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sus:Acid_5864 xylose isomerase domain-containing protein; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004656817.1 PFAM: Xylose isomerase-like TIM barrel; manually curated YP_004656818.1 PFAM: Phytanoyl-CoA dioxygenase (PhyH); InterPro IPR012307; KEGG: sli:Slin_2651 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004656819.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: fjo:Fjoh_4121 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: 3-oxoacyl-[acyl-carrier-protein] reductase YP_004656820.1 PFAM: short chain dehydrogenase; Prodigal; manually curated YP_004656821.1 PFAM: FMN-dependent dehydrogenase; COGs: COG2610 H+/gluconate symporter and related permease; InterPro IPR003474; KEGG: sli:Slin_3386 gluconate transporter; PFAM: Gluconate transporter; SPTR: Gluconate transporter; TIGRFAM: Gluconate transporter YP_004656822.1 PFAM: GntP family permease; TIGRFAM: gluconate transporter; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: dfe:Dfer_1462 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004656823.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: dfe:Dfer_1461 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR YP_004656824.1 PFAM: FecR protein; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: bfr:BF0666 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: Outer membrane protein YP_004656825.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: sli:Slin_0095 hypothetical protein; SPTR: Lipoprotein YP_004656826.1 COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR002218:IPR006311; KEGG: plm:Plim_0117 HI0933 family protein; PFAM: Glucose-inhibited division protein A-related; SPTR: HI0933 family protein YP_004656827.1 PFAM: Thi4 family; InterPro IPR002218; KEGG: plm:Plim_0117 HI0933 family protein; PFAM: Glucose-inhibited division protein A-related; SPTR: uncharacterized protein YP_004656828.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; KEGG: sli:Slin_6546 hypothetical protein; SPTR: uncharacterized protein YP_004656829.1 SPTR: uncharacterized protein YP_004656830.1 InterPro IPR011701; KEGG: dfe:Dfer_4712 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004656831.1 PFAM: Major Facilitator Superfamily; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR003313:IPR000005; KEGG: dfe:Dfer_5736 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; AraC protein, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004656832.1 PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; Prodigal; manually curated YP_004656833.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase; manually curated YP_004656834.1 PFAM: Helix-turn-helix; TIGRFAM: transcriptional regulator, y4mF family; InterPro IPR017508; KEGG: cpc:Cpar_0147 HipA N-terminal domain-containing protein; SPTR: HipA N-terminal domain protein; TIGRFAM: HipA, N-terminal YP_004656835.1 TIGRFAM: HipA N-terminal domain; COGs: COG3550 conserved hypothetical protein; InterPro IPR012894:IPR012893; KEGG: cpb:Cphamn1_2166 HipA domain-containing protein; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; SPTR: HipA domain protein YP_004656836.1 PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain; manually curated YP_004656839.1 KEGG: psa:PST_0632 type I restriction-modification system, S subunit; SPTR: Type I restriction-modification system, S subunit YP_004656840.1 COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; InterPro IPR001437; KEGG: pol:Bpro_1952 superfamily I DNA/RNA helicase; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic; SPTR: Superfamily I DNA and RNA helicases and helicase subunits-like YP_004656841.1 PFAM: Transcription elongation factor, GreA/GreB, C-term; COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; KEGG: fjo:Fjoh_3602 phospholipase D/transphosphatidylase; SPTR: Phospholipase D/Transphosphatidylase YP_004656842.1 PFAM: Protein of unknown function (DUF1669); COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: cni:Calni_1850 restriction modification system DNA specificity domain; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Type-1 restriction enzyme EcoDI specificity protein YP_004656843.1 PFAM: Type I restriction modification DNA specificity domain; COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: nth:Nther_1992 N-6 DNA methylase; PFAM: DNA methylase, adenine-specific; SPTR: Type I restriction-modification enzyme, M subunit YP_004656844.1 PFAM: N-6 DNA Methylase; HsdM N-terminal domain; COGs: COG4096 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014001:IPR007409:IPR006935:IPR001650; KEGG: gtn:GTNG_0761 type I restriction enzyme EcoKI subunit R; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; DNA/RNA helicase, C-terminal; PRIAM: Type I site-specific deoxyribonuclease; SMART: DEAD-like helicase, N-terminal; SPTR: Type III restriction protein res subunit YP_004656845.1 PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Helicase conserved C-terminal domain; Domain of unknown function (DUF3559); Type III restriction enzyme, res subunit; InterPro IPR002104; KEGG: dfe:Dfer_5531 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Integrase YP_004656846.1 PFAM: Phage integrase YP_004656848.1 InterPro IPR014883; KEGG: fps:FP0626 hypothetical protein; PFAM: VRR-NUC; SPTR: uncharacterized protein YP_004656849.1 PFAM: VRR-NUC domain YP_004656850.1 KEGG: fps:FP0625 hypothetical protein; SPTR: uncharacterized protein YP_004656851.1 KEGG: sli:Slin_3285 hypothetical protein; SPTR: uncharacterized protein YP_004656855.1 InterPro IPR006448; SPTR: uncharacterized protein; TIGRFAM: Phage terminase, small subunit, , P27 YP_004656856.1 PFAM: Phage terminase, small subunit; TIGRFAM: phage terminase, small subunit, , P27 family YP_004656857.1 PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: ModE molybdate transport repressor domain YP_004656858.1 Prodigal; manually curated YP_004656860.1 KEGG: ttr:Tter_2666 hypothetical protein; SPTR: uncharacterized protein YP_004656861.1 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dfe:Dfer_4877 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004656862.1 PFAM: Predicted permease; COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; KEGG: swd:Swoo_0898 coenzyme PQQ synthesis protein B; SPTR: Coenzyme PQQ synthesis protein B YP_004656863.1 PFAM: Metallo-beta-lactamase superfamily; TIGRFAM: coenzyme PQQ biosynthesis protein B; Prodigal; manually curated YP_004656864.1 PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; NAD-dependent DNA ligase C4 zinc finger domain; BRCA1 C Terminus (BRCT) domain; TIGRFAM: DNA ligase, NAD-dependent YP_004656865.1 COGs: COG5378 nucleotide-binding protein; InterPro IPR019298; KEGG: dfe:Dfer_4982 hypothetical protein; PFAM: Nucleotide-binding protein, PIN domain; SPTR: Predicted nucleic acid-binding protein, containing PIN domain YP_004656866.1 PFAM: Predicted nucleotide-binding protein, containing PIN domain; COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; InterPro IPR000836; KEGG: dfe:Dfer_2676 phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; PRIAM: Uracil phosphoribosyltransferase; SPTR: Phosphoribosyltransferase YP_004656867.1 PFAM: Phosphoribosyl transferase domain; InterPro IPR004518; KEGG: ppn:Palpr_2194 MazG nucleotide pyrophosphohydrolase; PFAM: NTP pyrophosphohydrolase MazG, catalytic core; SPTR: MazG nucleotide pyrophosphohydrolase YP_004656868.1 PFAM: MazG nucleotide pyrophosphohydrolase domain YP_004656869.1 COGs: COG2816 NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding; InterPro IPR000086; KEGG: hch:HCH_01478 ADP-ribose pyrophosphatase; PFAM: NUDIX hydrolase domain; SPTR: ADP-ribose pyrophosphatase YP_004656870.1 PFAM: NUDIX domain; InterPro IPR008454:IPR001434; KEGG: sli:Slin_0184 hypothetical protein; PFAM: Protein of unknown function DUF11; Collagen-binding surface protein Cna-like, B region; SPTR: uncharacterized protein; TIGRFAM: Protein of unknown function DUF11 YP_004656871.1 PFAM: Cna protein B-type domain; TIGRFAM: conserved repeat domain; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: sli:Slin_0190 histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: Histidine kinase YP_004656872.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Protein of unknown function (DUF2681); COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_0191 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004656873.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain YP_004656874.1 COGs: COG1983 stress-responsive transcriptional regulator protein; InterPro IPR007168; KEGG: dfe:Dfer_4257 phage shock protein C, PspC; PFAM: PspC; SPTR: Phage shock protein C, PspC YP_004656875.1 PFAM: PspC domain; Protein of unknown function (DUF2807); COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: dfe:Dfer_4256 transcriptional regulator, PadR-like family; PFAM: Transcriptional regulator PadR N-terminal-like; SPTR: Transcriptional regulator, PadR-like family YP_004656876.1 PFAM: Transcriptional regulator PadR-like family; COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: sli:Slin_2433 multiple antibiotic resistance (MarC)-related protein; PFAM: Multiple antibiotic resistance (MarC)-related; SPTR: Multiple antibiotic resistance (MarC)-related protein YP_004656877.1 PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family; COGs: COG0730 permease; InterPro IPR002781; KEGG: ppn:Palpr_0078 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: uncharacterized protein YP_004656878.1 PFAM: Sulfite exporter TauE/SafE; COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: dfe:Dfer_2399 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase YP_004656879.1 PFAM: NUDIX domain; COGs: COG1069 Ribulose kinase; InterPro IPR018484:IPR018485:IPR005929; KEGG: sli:Slin_1239 L-ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; PRIAM: Ribulokinase; SPTR: Ribulokinase; TIGRFAM: L-ribulokinase YP_004656880.1 PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: L-ribulokinase; COGs: COG2160 L-arabinose isomerase; HAMAP: L-arabinose isomerase; InterPro IPR003762; KEGG: lby:Lbys_2508 L-arabinose isomerase; PFAM: L-arabinose isomerase; PRIAM: L-arabinose isomerase; SPTR: L-arabinose isomerase YP_004656881.1 PFAM: L-arabinose isomerase; L-arabinose isomerase C-terminal domain; COGs: COG3534 Alpha-L-arabinofuranosidase; InterPro IPR010720; KEGG: sli:Slin_1237 alpha-L-arabinofuranosidase domain protein; PFAM: Alpha-L-arabinofuranosidase, C-terminal; SMART: Alpha-L-arabinofuranosidase, C-terminal; SPTR: Alpha-L-arabinofuranosidase domain protein YP_004656882.1 PFAM: Alpha-L-arabinofuranosidase C-terminus; COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: lby:Lbys_2507 L-ribulose 5-phosphate 4-epimerase; PFAM: Class II aldolase/adducin, N-terminal; PRIAM: L-ribulose-5-phosphate 4-epimerase; SPTR: L-ribulose 5-phosphate 4-epimerase YP_004656883.1 PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase; COGs: COG4146 symporter; InterPro IPR001734:IPR019900; KEGG: lby:Lbys_2506 sss sodium solute transporter superfamily; PFAM: Sodium/solute symporter; SPTR: SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup YP_004656884.1 PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; KEGG: sli:Slin_4315 hypothetical protein; SPTR: uncharacterized protein YP_004656885.1 COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; InterPro IPR001804:IPR014273; KEGG: sli:Slin_4313 isocitrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; SPTR: Isocitrate dehydrogenase; TIGRFAM: Isocitrate dehydrogenase bacteria YP_004656886.1 PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119; KEGG: sli:Slin_4312 LysR family transcriptional regulator; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; SPTR: Transcriptional regulator, LysR family YP_004656887.1 PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; COGs: COG2326 conserved hypothetical protein; InterPro IPR005660; KEGG: dfe:Dfer_4378 polyphosphate:AMP phosphotransferase; PFAM: Polyphosphate kinase 2; SPTR: Polyphosphate:AMP phosphotransferase; TIGRFAM: polyphosphate:nucleotide phosphotransferase, PPK2 family YP_004656888.1 PFAM: Polyphosphate kinase 2 (PPK2); TIGRFAM: polyphosphate:nucleotide phosphotransferase, PPK2 family; COGs: COG0642 Signal transduction histidine kinase; InterProIPR003018:IPR003661:IPR003594:IPR001789:IPR 007891; KEGG: cpi:Cpin_2257 GAF sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; CHASE3; GAF; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; Signal transduction response regulator, receiver region; SPTR: GAF sensor hybrid histidine kinase YP_004656889.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; CHASE3 domain; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterPro IPR000780; KEGG: sli:Slin_1030 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase, CheR-type; PRIAM: Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase, CheR-type; SPTR: MCP methyltransferase, CheR-type YP_004656890.1 PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain; COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; InterPro IPR000673; KEGG: cpi:Cpin_2259 CheB methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; SPTR: CheB methylesterase YP_004656891.1 PFAM: CheB methylesterase; COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR001789:IPR003661:IPR003594; KEGG: sli:Slin_1029 response regulator receiver sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SPTR: Response regulator receiver sensor signal transduction histidine kinase YP_004656892.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain YP_004656893.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: sli:Slin_1028 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein YP_004656894.1 PFAM: Response regulator receiver domain; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: sli:Slin_3851 sugar transferase; PFAM: Bacterial sugar transferase; SPTR: Sugar transferase YP_004656895.1 PFAM: Bacterial sugar transferase; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: cpi:Cpin_3709 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase, family 2 YP_004656896.1 PFAM: Glycosyl transferase 2; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_3862 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004656897.1 PFAM: Glycosyl transferase 2; KEGG: sli:Slin_3860 O-antigen polymerase; SPTR: O-antigen polymerase YP_004656898.1 InterPro IPR003406; KEGG: dfe:Dfer_0169 glycosyl transferase 14; PFAM: Glycosyl transferase, family 14; SPTR: Glycosyl transferase 14 YP_004656899.1 PFAM: Core-2/I-Branching enzyme; COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: sli:Slin_3855 acetyltransferase (isoleucine patch superfamily)-like protein; SPTR: Acetyltransferase (Isoleucine patch superfamily)-like protein YP_004656900.1 PFAM: Bacterial transferase hexapeptide (three repeats); InterPro IPR001296; KEGG: dfe:Dfer_0170 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1 YP_004656901.1 PFAM: Glycosyl transferases group 1 YP_004656902.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_3857 hypothetical protein; PFAM: Outer membrane efflux protein; SPTR: uncharacterized protein YP_004656903.1 PFAM: Outer membrane efflux protein; COGs: COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; KEGG: sli:Slin_3858 lipopolysaccharide biosynthesis protein; SPTR: Lipopolysaccharide biosynthesis protein YP_004656904.1 PFAM: Chain length determinant protein; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: phe:Phep_1968 polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein YP_004656905.1 PFAM: Polysaccharide biosynthesis protein; COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: dfe:Dfer_0180 acyltransferase 3; PFAM: Acyltransferase 3; SPTR: Acyltransferase 3 YP_004656906.1 PFAM: Acyltransferase; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_0174 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004656907.1 PFAM: Glycosyl transferase 2; KEGG: phe:Phep_3205 hypothetical protein; SPTR: uncharacterized protein YP_004656908.1 InterPro IPR001173; KEGG: dfe:Dfer_0173 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004656909.1 PFAM: Glycosyl transferase 2; InterPro IPR001173; KEGG: dfe:Dfer_0173 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004656910.1 PFAM: Glycosyl transferase 2; InterPro IPR005084:IPR006584; KEGG: dfe:Dfer_4512 carbohydrate binding family 6; PFAM: Carbohydrate binding domain, family 6; SMART: Cellulose binding, type IV; SPTR: Carbohydrate binding family 6 YP_004656911.1 PFAM: Carbohydrate binding module (family 6); Beta-galactosidase; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_3861 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004656912.1 PFAM: Glycosyl transferase 2; SPTR: uncharacterized protein YP_004656913.1 PFAM: Protein of unknown function (DUF2874); COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_6754 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein YP_004656914.1 PFAM: Outer membrane efflux protein; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sli:Slin_0918 efflux transporter RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD YP_004656915.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG3696 silver efflux pump; InterPro IPR001036:IPR004763; KEGG: sli:Slin_0917 heavy metal efflux pump, CzcA family; PFAM: Acriflavin resistance protein; SPTR: Heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA YP_004656916.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); InterPro IPR000620; KEGG: sfu:Sfum_0926 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: uncharacterized protein YP_004656917.1 PFAM: EamA-like transporter family; KEGG: sli:Slin_0249 hypothetical protein; SPTR: uncharacterized protein YP_004656918.1 KEGG: chu:CHU_0798 hypothetical protein; SPTR: uncharacterized protein YP_004656919.1 COGs: COG3306 Glycosyltransferase involved in LPS biosynthesis; InterPro IPR002654; KEGG: afw:Anae109_0378 glycosyl transferase; PFAM: Glycosyl transferase, family 25; SPTR: Glycosyl transferase 25 YP_004656920.1 PFAM: Glycosyltransferase 25 (LPS biosynthesis protein); COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: dfe:Dfer_4450 peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; SPTR: Peptidase M1 membrane alanine aminopeptidase YP_004656921.1 PFAM: Peptidase M1; COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011712:IPR003594; KEGG: sli:Slin_6439 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; SMART: ATP-binding region, ATPase-like; SPTR: Histidine kinase YP_004656922.1 PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; KEGG: cyh:Cyan8802_3419 hypothetical protein; SPTR: uncharacterized protein YP_004656923.1 InterPro IPR002575; PFAM: Aminoglycoside phosphotransferase YP_004656924.1 PFAM: Phosphotransferase enzyme family YP_004656925.1 COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); HAMAP: Protein translocase subunit secA; InterProIPR011115:IPR011130:IPR001650:IPR011116:IPR 000185; KEGG: dfe:Dfer_3555 preprotein translocase subunit SecA; PFAM: SecA DEAD-like; SecA preprotein cross-linking region; DNA/RNA helicase, C-terminal; SecA Wing/Scaffold; SPTR: Protein translocase subunit secA; TIGRFAM: SecA protein YP_004656926.1 PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit; InterPro IPR010496; KEGG: sli:Slin_3047 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein YP_004656927.1 PFAM: Domain of Unknown Function (DUF1080); KEGG: dfe:Dfer_2858 hypothetical protein; SPTR: uncharacterized protein YP_004656928.1 PFAM: Protein of unknown function (DUF2911); COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: sli:Slin_6133 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28 YP_004656929.1 PFAM: Peptidase M28; KEGG: sli:Slin_6634 nb031; nematoblast specific protein; SPTR: Nb031; nematoblast specific protein YP_004656930.1 PFAM: Domain of unknown function (DUF3472); COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; InterPro IPR001041:IPR002888; KEGG: bra:BRADO5691 xanthine dehydrogenase YagT-like, iron-sulfur binding subunit; PFAM: [2Fe-2S]-binding; Ferredoxin; PRIAM: Carbon-monoxide dehydrogenase (acceptor); SPTR: xanthine dehydrogenase YagT-like, iron-sulfur binding subunit YP_004656931.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain; COGs: COG1319 Aerobic-type carbon monoxide dehydrogenase middle subunit CoxM/CutM homologs; InterPro IPR002346:IPR005107; KEGG: sli:Slin_2370 molybdopterin dehydrogenase FAD-binding protein; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal; PRIAM: Xanthine dehydrogenase; SPTR: Molybdopterin dehydrogenase FAD-binding protein YP_004656932.1 PFAM: FAD binding domain in molybdopterin dehydrogenase; CO dehydrogenase flavoprotein C-terminal domain; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR000674:IPR008274; KEGG: sli:Slin_2369 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead; PRIAM: Xanthine dehydrogenase; SPTR: Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein YP_004656933.1 PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; COGs: COG0177 EndoIII-related endonuclease; InterPro IPR003265:IPR003651; KEGG: sli:Slin_4204 DNA-(apurinic or apyrimidinic site) lyase; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD domain; SPTR: DNA-(Apurinic or apyrimidinic site) lyase YP_004656934.1 PFAM: HhH-GPD superfamily base excision DNA repair protein; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dfe:Dfer_0565 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein YP_004656935.1 PFAM: alpha/beta hydrolase fold; COGs: COG0492 Thioredoxin reductase; HAMAP: Ferredoxin--NADP reductase; InterPro IPR013027; KEGG: sli:Slin_3270 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Ferredoxin--NADP(+) reductase; SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004656936.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG0633 Ferredoxin; InterPro IPR001041; KEGG: sli:Slin_3269 ferredoxin; PFAM: Ferredoxin; SPTR: Ferredoxin YP_004656937.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; InterPro IPR006175; KEGG: chu:CHU_2496 endoribonuclease; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease, inhibits protein synthesis YP_004656938.1 PFAM: Endoribonuclease L-PSP; KEGG: phe:Phep_0416 hypothetical protein; SPTR: uncharacterized protein YP_004656939.1 KEGG: sli:Slin_4309 hypothetical protein; SPTR: uncharacterized protein YP_004656940.1 COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; InterPro IPR002903; KEGG: sli:Slin_4428 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; SPTR: Ribosomal RNA small subunit methyltransferase H; TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW YP_004656941.1 PFAM: MraW methylase; TIGRFAM: S-adenosyl-methyltransferase MraW; KEGG: sli:Slin_4737 hypothetical protein; SPTR: uncharacterized protein YP_004656942.1 COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311:IPR001460:IPR005543; KEGG: sli:Slin_4738 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PASTA; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Peptidoglycan glycosyltransferase YP_004656943.1 PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sli:Slin_1892 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004656944.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: dfe:Dfer_4258 hypothetical protein; SPTR: uncharacterized protein YP_004656945.1 PFAM: Protein of unknown function (DUF2807); COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_2354 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004656946.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: dfe:Dfer_2353 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS YP_004656947.1 PFAM: Histidine kinase; COGs: COG1017 Hemoglobin-like flavoprotein; InterPro IPR000971; KEGG: azc:AZC_0683 hemoprotein; PFAM: Globin, subset; SPTR: hemoprotein YP_004656948.1 PFAM: Globin; COGs: COG3292 periplasmic ligand-binding sensor domain; InterPro IPR011110:IPR011123:IPR010559; KEGG: sli:Slin_5621 PAS/PAC sensor signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, internal region; Two component regulator three Y; Two component regulator propeller; SPTR: PAS/PAC sensor signal transduction histidine kinase YP_004656949.1 PFAM: Histidine kinase; Y_Y_Y domain; Two component regulator propeller; InterPro IPR019229; KEGG: dfe:Dfer_5116 hypothetical protein; PFAM: Protein of unknown function DUF2166; SPTR: uncharacterized protein YP_004656950.1 PFAM: Phosphoribosyl-ATP pyrophosphohydrolase YP_004656951.1 KEGG: gym:GYMC10_2664 hypothetical protein; SPTR: integron gene cassette protein YP_004656952.1 KEGG: sli:Slin_1312 hypothetical protein; SPTR: uncharacterized protein YP_004656953.1 PFAM: Protein of unknown function (DUF664); HAMAP: Protein of unknown function DUF1328; InterPro IPR009760; KEGG: fjo:Fjoh_4310 hypothetical protein; PFAM: Protein of unknown function DUF1328; SPTR: uncharacterized protein YP_004656954.1 PFAM: Protein of unknown function (DUF1328); Prodigal; manually curated YP_004656955.1 PFAM: carbohydrate binding domain; Glycosyl hydrolase 20, catalytic domain; Glycosyl hydrolase 20, domain 2; Chitobiase/beta-hexosaminidase C-terminal domain; KEGG: shg:Sph21_1312 hypothetical protein; SPTR: uncharacterized protein YP_004656956.1 PFAM: Protein of unknown function, DUF255 YP_004656957.1 Prodigal; manually curated YP_004656958.1 KEGG: npu:Npun_F6101 hypothetical protein; SPTR: uncharacterized protein YP_004656959.1 InterPro IPR004843; KEGG: ppn:Palpr_0422 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase YP_004656960.1 PFAM: Calcineurin-like phosphoesterase; COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: dfe:Dfer_3770 amino acid permease-associated region; PFAM: Amino acid permease-associated region; SPTR: Amino acid permease-associated region YP_004656961.1 PFAM: Amino acid permease; KEGG: sli:Slin_5705 hypothetical protein; SPTR: uncharacterized protein YP_004656962.1 KEGG: bbe:BBR47_05840 hypothetical protein; SPTR: uncharacterized protein YP_004656963.1 COGs: COG0763 Lipid A disaccharide synthetase; InterPro IPR003835; KEGG: dfe:Dfer_2572 lipid-A-disaccharide synthase; PFAM: Glycosyl transferase, family 19; PRIAM: Lipid-A-disaccharide synthase; SPTR: Lipid-A-disaccharide synthase; TIGRFAM: Glycosyl transferase, family 19 YP_004656964.1 PFAM: Lipid-A-disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase; COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: dfe:Dfer_2573 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; PFAM: 6-pyruvoyl tetrahydropterin synthase-related; SPTR: uncharacterized protein YP_004656965.1 PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: 6-pyruvoyl tetrahydropterin synthase/QueD family protein; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR011912; KEGG: sli:Slin_3451 ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: ADP-glyceromanno-heptose 6-epimerase; SPTR: ADP-L-glycero-D-manno-heptose-6-epimerase; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase YP_004656966.1 PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; COGs: COG0789 transcriptional regulator protein; InterPro IPR000551:IPR006158; KEGG: sli:Slin_5173 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; Cobalamin (vitamin B12)-binding; SMART: HTH transcriptional regulator, MerR; SPTR: Transcriptional regulator, MerR family YP_004656967.1 PFAM: MerR family regulatory protein; COGs: COG2324 membrane protein; InterPro IPR007354; KEGG: mtt:Ftrac_1977 hypothetical protein; PFAM: Protein of unknown function DUF422; SPTR: Membrane protein YP_004656968.1 PFAM: Protein of unknown function (DUF422) YP_004656969.1 PFAM: Yqey-like protein; InterPro IPR003825; KEGG: sli:Slin_4988 colicin V production protein; PFAM: Colicin V production protein; SPTR: Colicin V production protein YP_004656970.1 PFAM: Colicin V production protein; COGs: COG5495 conserved hypothetical protein; InterPro IPR004455:IPR018931; KEGG: dfe:Dfer_3502 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; PFAM: Domain of unknown function DUF2520; NADP oxidoreductase, coenzyme F420-dependent; SPTR: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_004656971.1 PFAM: Domain of unknown function (DUF2520); Rossmann-like domain; KEGG: dfe:Dfer_2807 hypothetical protein; SPTR: uncharacterized protein YP_004656972.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_1017 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004656973.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: sli:Slin_0232 hypothetical protein; SPTR: uncharacterized protein YP_004656974.1 PFAM: Protein of unknown function (DUF2874) YP_004656975.1 COGs: COG0038 Chloride channel protein EriC; InterPro IPR001807; KEGG: fjo:Fjoh_2371 Cl-channel, voltage-gated family protein; PFAM: Chloride channel, voltage gated; SPTR: uncharacterized protein YP_004656976.1 PFAM: Voltage gated chloride channel; InterPro IPR012910; KEGG: sli:Slin_2376 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug YP_004656977.1 COGs: COG2839 conserved hypothetical protein; InterPro IPR007403; KEGG: lby:Lbys_1596 hypothetical protein; PFAM: Protein of unknown function DUF456; SPTR: uncharacterized protein YP_004656978.1 PFAM: Protein of unknown function (DUF456); COGs: COG1748 Saccharopine dehydrogenase and related protein; InterPro IPR005097; KEGG: dfe:Dfer_2888 saccharopine dehydrogenase; PFAM: Saccharopine dehydrogenase; SPTR: Saccharopine dehydrogenase YP_004656979.1 PFAM: Saccharopine dehydrogenase; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR001140:IPR003439:IPR003593; KEGG: dfe:Dfer_4763 ABC transporter related; PFAM: ABC transporter-like; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related YP_004656980.1 PFAM: ABC transporter; ABC transporter transmembrane region; KEGG: sli:Slin_0566 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004656981.1 KEGG: sli:Slin_1651 hypothetical protein; SPTR: uncharacterized protein YP_004656982.1 COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR001962; KEGG: sli:Slin_0568 asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; SPTR: Asparagine synthase (Glutamine-hydrolyzing) YP_004656983.1 PFAM: Asparagine synthase YP_004656984.1 KEGG: dfe:Dfer_5035 hypothetical protein; SPTR: uncharacterized protein YP_004656985.1 PFAM: Coenzyme PQQ synthesis protein D (PqqD); KEGG: dfe:Dfer_5036 hypothetical protein; SPTR: uncharacterized protein YP_004656986.1 KEGG: sli:Slin_2007 HPr kinase; SPTR: HPr kinase YP_004656987.1 InterPro IPR014982; KEGG: sli:Slin_1111 GSCFA domain protein; PFAM: GSCFA; SPTR: GSCFA domain protein YP_004656988.1 PFAM: GSCFA family YP_004656989.1 KEGG: dfe:Dfer_3779 hypothetical protein; SPTR: uncharacterized protein YP_004656990.1 COGs: COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related protein; InterPro IPR001950; KEGG: dfe:Dfer_3941 translation initiation factor SUI1; PFAM: Translation initiation factor SUI1; SPTR: Translation initiation factor SUI1 YP_004656991.1 PFAM: Translation initiation factor SUI1; TIGRFAM: translation initation factor SUI1, , prokaryotic YP_004656992.1 KEGG: sli:Slin_3168 hypothetical protein; SPTR: uncharacterized protein YP_004656993.1 KEGG: cbg:CbuG_1613 hypothetical protein; SPTR: Hypothetical exported protein YP_004656994.1 PFAM: Protein of unknown function (DUF2807); COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: sli:Slin_3167 response regulator receiver protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Response regulator receiver protein YP_004656995.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: ana:alr3189 beta-carotene ketolase; PFAM: Fatty acid desaturase, type 1; SPTR: CrtW YP_004656996.1 PFAM: Fatty acid desaturase; COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: cno:NT01CX_2408 type I restriction-modification system DNA methylase; PFAM: DNA methylase, adenine-specific; SPTR: Type I restriction-modification system DNA methylase YP_004656997.1 PFAM: N-6 DNA Methylase; HsdM N-terminal domain; InterPro IPR000055; KEGG: tmt:Tmath_1863 restriction modification system DNA specificity domain protein; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Restriction modification system DNA specificity domain YP_004656998.1 PFAM: Type I restriction modification DNA specificity domain; COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated YP_004656999.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; Prodigal; manually curated YP_004657000.1 InterPro IPR001387; KEGG: sli:Slin_4822 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family protein YP_004657001.1 PFAM: Helix-turn-helix; SPTR: uncharacterized protein YP_004657002.1 COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR007409:IPR006935:IPR014001:IPR004473; KEGG: pcr:Pcryo_2363 HsdR family type I site-specific deoxyribonuclease; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; SPTR: HsdR family type I site-specific deoxyribonuclease; TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit YP_004657003.1 PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; KEGG: bpb:bpr_I1711 hypothetical protein; SPTR: uncharacterized protein YP_004657004.1 COGs: COG1564 Thiamine pyrophosphokinase; InterPro IPR007371:IPR007373:IPR006282; KEGG: sli:Slin_2799 thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic domain; Thiamin pyrophosphokinase, vitamin B1-binding region; SPTR: Thiamine pyrophosphokinase; TIGRFAM: Thiamin pyrophosphokinase YP_004657005.1 PFAM: Thiamin pyrophosphokinase, vitamin B1 binding domain; Thiamin pyrophosphokinase, catalytic domain; TIGRFAM: thiamine pyrophosphokinase; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341:IPR013342; KEGG: sli:Slin_0013 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; PRIAM: Chloromuconate cycloisomerase; SPTR: Mandelate racemase/muconate lactonizing protein YP_004657006.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; KEGG: sli:Slin_3230 hypothetical protein; SPTR: uncharacterized protein YP_004657007.1 COGs: COG0074 Succinyl-CoA synthetase alpha subunit; InterPro IPR003781:IPR005811:IPR005810; KEGG: sli:Slin_3229 succinyl-CoA synthetase, subunit alpha; PFAM: CoA-binding; ATP-citrate lyase/succinyl-CoA ligase; PRIAM: Succinate--CoA ligase (ADP-forming); SPTR: Succinyl-CoA ligase [ADP-forming] subunit alpha; TIGRFAM: Succinyl-CoA ligase, alpha subunit YP_004657008.1 PFAM: CoA binding domain; CoA-ligase; TIGRFAM: succinyl-CoA synthetase, alpha subunit; KEGG: sli:Slin_3228 hypothetical protein; SPTR: uncharacterized protein YP_004657009.1 COGs: COG1587 Uroporphyrinogen-III synthase; InterPro IPR003754; KEGG: dfe:Dfer_2913 uroporphyrinogen III synthase HEM4; PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; SPTR: Uroporphyrinogen III synthase HEM4 YP_004657010.1 PFAM: Uroporphyrinogen-III synthase HemD; InterPro IPR019861; KEGG: sli:Slin_3226 hypothetical protein; SPTR: membrane protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes YP_004657011.1 PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein; COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: sli:Slin_3225 hypothetical protein; PFAM: Sulphatase-modifying factor; SPTR: uncharacterized protein YP_004657012.1 PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: gliding motility-associated lipoprotein GldK; InterPro IPR019852; KEGG: sli:Slin_3224 gliding motility-associated protein GldL; SPTR: Gliding motility-associated protein GldL; TIGRFAM: Gliding motility-associated protein, GldL YP_004657013.1 TIGRFAM: gliding motility-associated protein GldL; InterPro IPR019859; KEGG: sli:Slin_3223 gliding motility-associated protein GldM; SPTR: Gliding motility-associated protein GldM; TIGRFAM: Gliding motility-associated protein GldM YP_004657014.1 PFAM: GldM C-terminal domain; GldM N-terminal domain; TIGRFAM: gliding motility-associated protein GldM; InterPro IPR019847; KEGG: sli:Slin_3222 gliding motility associated protein GldN; SPTR: Gliding motility associated protein GldN; TIGRFAM: Gliding motility associated protein GldN YP_004657015.1 TIGRFAM: gliding motility associated protein GldN; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_1147 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; manually curated YP_004657016.1 PFAM: Glycosyl transferase 2; COGs: COG2003 DNA repair protein; InterPro IPR000445:IPR001405; KEGG: sli:Slin_0523 DNA repair protein RadC; PFAM: DNA repair, RadC-like; Helix-hairpin-helix motif; SPTR: DNA repair protein RadC; TIGRFAM: DNA repair, RadC-like YP_004657017.1 PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc; COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: aba:Acid345_3835 amino acid transporter; PFAM: Amino acid permease-associated region; SPTR: Amino acid/polyamine/organocation transporter, APC superfamily YP_004657018.1 PFAM: Amino acid permease; KEGG: fjo:Fjoh_2177 hypothetical protein; SPTR: uncharacterized protein YP_004657019.1 PFAM: Protein of unknown function (DUF1572); KEGG: dfe:Dfer_2493 twin-arginine translocation pathway signal; SPTR: Twin-arginine translocation pathway signal YP_004657020.1 COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076:IPR000172; KEGG: dfe:Dfer_2494 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase YP_004657021.1 PFAM: GMC oxidoreductase; Prodigal; manually curated YP_004657022.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_2868 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004657023.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_2867 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS YP_004657024.1 PFAM: Histidine kinase; COGs: COG0474 Cation transport ATPase; InterPro IPR008250:IPR005834:IPR006068:IPR001757; KEGG: cao:Celal_3035 atpase, p-type (transporting), had superfamily, subfamily IC; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal; PRIAM: Calcium-transporting ATPase; SPTR: ATPase, P-type (Transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter YP_004657025.1 PFAM: E1-E2 ATPase; Cation transporting ATPase, C-terminus; haloacid dehalogenase-like hydrolase; Cation transporter/ATPase, N-terminus; TIGRFAM: plasma-membrane calcium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692; KEGG: sli:Slin_4469 peptidase S45 penicillin amidase; PFAM: Peptidase S45, penicillin amidase; PRIAM: Glutaryl-7-aminocephalosporanic-acid acylase; SPTR: Peptidase S45 penicillin amidase YP_004657026.1 PFAM: Penicillin amidase; COGs: COG3530 conserved hypothetical protein; KEGG: phe:Phep_0021 hypothetical protein; SPTR: uncharacterized protein YP_004657027.1 KEGG: cao:Celal_3797 hypothetical protein; SPTR: uncharacterized protein YP_004657028.1 COGs: COG3268 conserved hypothetical protein; InterPro IPR005097; KEGG: cpi:Cpin_5762 saccharopine dehydrogenase; PFAM: Saccharopine dehydrogenase; SPTR: Saccharopine dehydrogenase YP_004657029.1 PFAM: Saccharopine dehydrogenase; KEGG: zpr:ZPR_3092 hypothetical protein; SPTR: uncharacterized protein YP_004657030.1 COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: fps:FP2000 thioredoxin family protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Pyridine nucleotide-disulphide oxidoreductase YP_004657031.1 PFAM: Rhodanese-like domain; KEGG: wvi:Weevi_0462 hypothetical protein; SPTR: uncharacterized protein YP_004657032.1 PFAM: Protein of unknown function (DUF3365); KEGG: psn:Pedsa_1895 protein tyrosine phosphatase; SPTR: Low molecular weight phosphatase YP_004657033.1 PFAM: Low molecular weight phosphotyrosine protein phosphatase; COGs: COG0798 Arsenite efflux pump ACR3 and related permease; InterPro IPR002657:IPR004706; KEGG: dfe:Dfer_0846 arsenical-resistance protein; PFAM: Bile acid:sodium symporter; SPTR: Arsenical-resistance protein; TIGRFAM: Arsenical-resistance protein ACR3 YP_004657034.1 PFAM: Sodium Bile acid symporter family; TIGRFAM: arsenical-resistance protein; InterPro IPR001845; KEGG: lbf:LBF_2770 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family YP_004657035.1 PFAM: Bacterial regulatory protein, arsR family; KEGG: dfe:Dfer_1543 hypothetical protein; SPTR: uncharacterized protein YP_004657037.1 KEGG: bth:BT_3435 hypothetical protein; SPTR: uncharacterized protein YP_004657038.1 KEGG: fbc:FB2170_17341 hypothetical protein; SPTR: uncharacterized protein YP_004657039.1 PFAM: Protein of unknown function (DUF2892); COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR013766:IPR005746; KEGG: shg:Sph21_3201 thioredoxin; PFAM: Thioredoxin domain; SPTR: Thioredoxin C-2; TIGRFAM: Thioredoxin YP_004657040.1 PFAM: Thioredoxin; TIGRFAM: thioredoxin; KEGG: sli:Slin_6448 hypothetical protein; SPTR: uncharacterized protein YP_004657041.1 KEGG: sli:Slin_6447 hypothetical protein; SPTR: uncharacterized protein YP_004657042.1 COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: cly:Celly_0541 rhodanese-like protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: uncharacterized protein YP_004657043.1 PFAM: Rhodanese-like domain; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: sli:Slin_4055 histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SPTR: Histidine kinase YP_004657044.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: dfe:Dfer_2743 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family YP_004657045.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_4056 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein YP_004657046.1 PFAM: Outer membrane efflux protein; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_2746 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD YP_004657047.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG3696 silver efflux pump; InterPro IPR001036:IPR004763; KEGG: dfe:Dfer_2747 heavy metal efflux pump, CzcA family; PFAM: Acriflavin resistance protein; SPTR: Heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA YP_004657048.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); InterPro IPR001440:IPR019734; KEGG: sli:Slin_4799 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein YP_004657049.1 KEGG: sli:Slin_4797 hypothetical protein; SPTR: uncharacterized protein YP_004657050.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: sli:Slin_1850 histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SPTR: Histidine kinase YP_004657051.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: dfe:Dfer_2743 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family YP_004657052.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: fba:FIC_01253 UspA; PFAM: UspA; SPTR: UspA YP_004657053.1 PFAM: Universal stress protein family; KEGG: sli:Slin_0579 hypothetical protein; SPTR: uncharacterized protein YP_004657054.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: lby:Lbys_3423 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004657055.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: cbh:CLC_0364 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: uncharacterized protein YP_004657056.1 COGs: COG0353 Recombinational DNA repair protein (RecF pathway); HAMAP: Recombination protein recR; InterPro IPR015967:IPR006171:IPR006154:IPR000093; KEGG: sli:Slin_1600 recombination protein RecR; SMART: Toprim domain, subgroup; SPTR: Recombination protein recR; TIGRFAM: RecR protein YP_004657057.1 PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR; KEGG: sli:Slin_0442 anti-FecI sigma factor, FecR; SPTR: Anti-FecI sigma factor, FecR YP_004657058.1 InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_5672 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004657059.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_5673 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein YP_004657060.1 PFAM: SusD family; COGs: COG1162 GTPase; HAMAP: ribosome biogenesis GTPase RsgA; InterPro IPR004881; KEGG: dfe:Dfer_3198 ribosome-associated GTPase; PFAM: GTPase EngC; SPTR: ribosome biogenesis GTPase RsgA 2; TIGRFAM: GTPase EngC YP_004657061.1 PFAM: Protein of unknown function, DUF258; TIGRFAM: ribosome small subunit-dependent GTPase A; COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR002658; KEGG: sli:Slin_2803 iron-containing alcohol dehydrogenase; PFAM: 3-dehydroquinate synthase AroB; SPTR: Iron-containing alcohol dehydrogenase YP_004657062.1 PFAM: Iron-containing alcohol dehydrogenase; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: sli:Slin_2804 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: Glutamine--scyllo-inositol transaminase YP_004657063.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130; KEGG: sli:Slin_5486 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; SPTR: Peptidyl-prolyl cis-trans isomerase cyclophilin type YP_004657064.1 PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sli:Slin_6756 efflux transporter, RND family, MFP subunit; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD YP_004657065.1 TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG3696 silver efflux pump; InterPro IPR001036:IPR003423:IPR004763; KEGG: chu:CHU_1512 cation efflux protein; PFAM: Acriflavin resistance protein; Outer membrane efflux protein; SPTR: Cation efflux system protein CzcA; TIGRFAM: Heavy metal efflux pump CzcA YP_004657066.1 PFAM: Outer membrane efflux protein; AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium) YP_004657067.1 KEGG: sli:Slin_3178 hypothetical protein; SPTR: uncharacterized protein YP_004657068.1 COGs: COG1918 Fe2+ transport system protein A; InterPro IPR007167; KEGG: sli:Slin_1450 FeoA family protein; PFAM: Ferrous iron transporter, FeoA subunit; SPTR: FeoA family protein YP_004657069.1 PFAM: FeoA domain; COGs: COG0370 Fe2+ transport system protein B; InterProIPR002917:IPR011619:IPR011642:IPR011640:IPR 005225:IPR003373; KEGG: sli:Slin_1451 ferrous iron transporter B; PFAM: Ferrous iron transport protein B, N-terminal; GTP-binding protein, HSR1-related; Nucleoside recognition; Ferrous iron transport protein B, C-terminal; SPTR: Ferrous iron transport protein B; TIGRFAM: Ferrous iron transport protein B; Small GTP-binding protein YP_004657070.1 PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: sli:Slin_2483 histone deacetylase; PFAM: Histone deacetylase superfamily; SPTR: Histone deacetylase YP_004657071.1 PFAM: Histone deacetylase domain; KEGG: dfe:Dfer_2764 hypothetical protein; SPTR: uncharacterized protein YP_004657072.1 KEGG: dfe:Dfer_2765 hypothetical protein; SPTR: uncharacterized protein YP_004657073.1 COGs: COG1765 redox protein regulator of disulfide bond formation; InterPro IPR003718; KEGG: dfe:Dfer_5001 OsmC family protein; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: OsmC family protein YP_004657074.1 PFAM: OsmC-like protein; KEGG: sli:Slin_1014 hypothetical protein; SPTR: uncharacterized protein YP_004657075.1 PFAM: Domain of unknown function (DUF3471); COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130; KEGG: lby:Lbys_2390 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; SPTR: Peptidyl-prolyl cis-trans isomerase YP_004657076.1 PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR002937; KEGG: sli:Slin_0654 amine oxidase; PFAM: Amine oxidase; SPTR: Amine oxidase YP_004657077.1 PFAM: Flavin containing amine oxidoreductase; COGs: COG3380 NAD/FAD-dependent oxidoreductase; InterPro IPR002937; KEGG: sli:Slin_4691 FAD dependent oxidoreductase; PFAM: Amine oxidase; SPTR: FAD dependent oxidoreductase; manually curated YP_004657078.1 PFAM: Flavin containing amine oxidoreductase; COGs: COG0104 Adenylosuccinate synthase; HAMAP: Adenylosuccinate synthetase; InterPro IPR001114; KEGG: dfe:Dfer_4579 adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; PRIAM: Adenylosuccinate synthase; SMART: Adenylosuccinate synthetase; SPTR: Adenylosuccinate synthetase 2; TIGRFAM: Adenylosuccinate synthetase YP_004657079.1 PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: sli:Slin_1610 Fur family ferric uptake regulator; PFAM: Ferric-uptake regulator; SPTR: Ferric uptake regulator, Fur family YP_004657080.1 PFAM: Ferric uptake regulator family; COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterProIPR006674:IPR007685:IPR004095:IPR002912:IPR 003607:IPR004811; KEGG: sli:Slin_1611 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD region, subdomain; TGS; Amino acid-binding ACT; PRIAM: GTP diphosphokinase; SMART: Metal-dependent phosphohydrolase, HD region; SPTR: (P)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT protein YP_004657081.1 PFAM: HD domain; ACT domain; TGS domain; Region found in RelA / SpoT proteins; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family YP_004657082.1 PFAM: Bacterial trigger factor protein (TF); TIGRFAM: trigger factor; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: ppn:Palpr_0445 transcriptional regulator, crp/fnr family; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family YP_004657083.1 PFAM: Cyclic nucleotide-binding domain YP_004657085.1 KEGG: sli:Slin_2034 hypothetical protein; SPTR: uncharacterized protein YP_004657086.1 Prodigal; manually curated YP_004657087.1 PFAM: O-methyltransferase; COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: caa:Caka_0891 esterase; PFAM: esterase; SPTR: esterase YP_004657088.1 PFAM: esterase; COGs: COG1062 Zn-dependent alcohol dehydrogenase class III; InterPro IPR013154:IPR013149; KEGG: cao:Celal_3017 alcohol dehydrogenase GroES domain protein; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; SPTR: MS123, alcohol dehydrogenase YP_004657089.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; KEGG: mtt:Ftrac_1988 hypothetical protein; SPTR: Lipoprotein YP_004657090.1 COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: dfe:Dfer_4990 UspA domain protein; PFAM: UspA; SPTR: UspA domain protein YP_004657091.1 PFAM: Universal stress protein family; Prodigal; manually curated YP_004657092.1 PFAM: BlaR1 peptidase M56; COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: sli:Slin_5968 CopY family transcriptional regulator; PFAM: Penicillinase repressor; SPTR: Transcriptional repressor, CopY family YP_004657093.1 PFAM: Penicillinase repressor; COGs: COG0412 Dienelactone hydrolase; InterPro IPR002925; KEGG: sli:Slin_5500 dienelactone hydrolase; PFAM: Dienelactone hydrolase; SPTR: Dienelactone hydrolase YP_004657094.1 PFAM: Dienelactone hydrolase; COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component; InterPro IPR003439:IPR003593:IPR010230; KEGG: dfe:Dfer_5778 FeS assembly ATPase SufC; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: FeS assembly ATPase SufC; TIGRFAM: ATPase SufC, SUF system FeS cluster assembly YP_004657095.1 PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC; COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825:IPR011542; KEGG: sli:Slin_0174 FeS assembly protein SufD; PFAM: SUF system FeS cluster assembly, SufBD; SPTR: FeS assembly protein SufD; TIGRFAM: SUF system FeS cluster assembly, SufD YP_004657096.1 PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD; KEGG: geb:GM18_2404 HEPN domain-containing protein; SPTR: HEPN domain protein YP_004657098.1 COGs: COG1052 Lactate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140; KEGG: pmx:PERMA_1233 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; PRIAM: Phosphoglycerate dehydrogenase; SPTR: Glycerate dehydrogenase (NADH-dependent hydroxypyruvatereductase) (Hpr) (Gdh) (Hydroxypyruvate dehydrogenase) (Glyoxylatereductase) (Hpr-a) YP_004657099.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; KEGG: dfe:Dfer_4970 hypothetical protein; SPTR: uncharacterized protein YP_004657101.1 COGs: COG1554 Trehalose and maltose hydrolase (possible phosphorylase); InterPro IPR005196:IPR005195:IPR005194; KEGG: dfe:Dfer_2756 maltose phosphorylase; PFAM: Glycoside hydrolase 65, central catalytic; Glycoside hydrolase 65, N-terminal; Glycoside hydrolase, family 65, C-terminal; PRIAM: Kojibiose phosphorylase; SPTR: Kojibiose phosphorylase YP_004657102.1 PFAM: Glycosyl hydrolase 65, C-terminal domain; Glycosyl hydrolase 65, N-terminal domain; Glycosyl hydrolase 65 central catalytic domain; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: pru:PRU_2908 group 2 family glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase, group 2 family YP_004657103.1 PFAM: Glycosyl transferase 2; COGs: COG0657 Esterase/lipase; KEGG: sli:Slin_4918 esterase/lipase precursor; SPTR: esterase/lipase YP_004657104.1 PFAM: Prolyl oligopeptidase; COGs: COG3751 proline hydroxylase; InterPro IPR005123:IPR006620; KEGG: sli:Slin_4910 2OG-Fe(II) oxygenase; PFAM: Oxoglutarate/iron-dependent oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; SPTR: 2OG-Fe(II) oxygenase; manually curated YP_004657105.1 COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: cpi:Cpin_7134 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase YP_004657106.1 COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; KEGG: dfe:Dfer_1067 peptidylprolyl isomerase (FKBP-type peptidyl-prolyl cis-trans isomerase); SPTR: Peptidyl-prolyl cis-trans isomerase YP_004657107.1 PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; COGs: COG2957 Peptidylarginine deiminase; InterPro IPR007466; KEGG: sli:Slin_0810 agmatine deiminase; PFAM: Peptidyl-arginine deiminase, Porphyromonas-type; PRIAM: Agmatine deiminase; SPTR: Agmatine deiminase YP_004657108.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; InterPro IPR014865; KEGG: zpr:ZPR_1806 hypothetical protein; SPTR: uncharacterized protein YP_004657109.1 PFAM: DsrE/DsrF-like family YP_004657110.1 Prodigal; manually curated YP_004657111.1 TIGRFAM: DNA polymerase III, delta' subunit; InterPro IPR011519; KEGG: dfe:Dfer_4738 ASPIC/UnbV domain protein; PFAM: ASPIC/UnbV; SPTR: ASPIC/UnbV domain protein YP_004657112.1 PFAM: ASPIC and UnbV; KEGG: sli:Slin_0911 hypothetical protein; SPTR: uncharacterized protein YP_004657113.1 InterPro IPR012944; KEGG: lby:Lbys_2780 ragb/susd domain protein; PFAM: RagB/SusD; SPTR: outer membrane protein probably involved in nutrient binding YP_004657114.1 PFAM: SusD family; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: lby:Lbys_2779 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: Membrane protein YP_004657115.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG4067 conserved hypothetical protein; InterPro IPR008503; KEGG: sli:Slin_6088 hypothetical protein; PFAM: Protein of unknown function DUF785; SPTR: uncharacterized protein YP_004657116.1 PFAM: Protein of unknown function (DUF785); COGs: COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); InterPro IPR013651:IPR004666; KEGG: dfe:Dfer_3274 alpha-L-glutamate ligase, RimK family; PFAM: ATP-grasp fold, RimK-type; SPTR: Alpha-L-glutamate ligase, RimK family; TIGRFAM: S6 modification enzyme RimK YP_004657117.1 PFAM: RimK-like ATP-grasp domain; TIGRFAM: alpha-L-glutamate ligases, RimK family; COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: dfe:Dfer_5114 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase YP_004657118.1 PFAM: NUDIX domain YP_004657119.1 InterPro IPR012910:IPR000531; KEGG: sli:Slin_3031 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004657120.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: sli:Slin_3030 hypothetical protein; SPTR: uncharacterized protein YP_004657121.1 InterPro IPR013517:IPR011519; KEGG: sli:Slin_3029 ASPIC/UnbV domain protein; PFAM: ASPIC/UnbV; FG-GAP; SPTR: ASPIC/UnbV domain protein YP_004657122.1 PFAM: ASPIC and UnbV; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR013096:IPR000005:IPR018060; KEGG: sli:Slin_4043 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; Cupin 2, conserved barrel; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004657123.1 PFAM: Cupin domain; InterPro IPR012307; KEGG: pjd:Pjdr2_3667 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: uncharacterized protein YP_004657124.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: ttr:Tter_0136 WD40 domain protein beta propeller; PFAM: WD40-like Beta Propeller; SPTR: WD40-like Beta Propeller YP_004657125.1 PFAM: WD40-like Beta Propeller Repeat; InterPro IPR004455; KEGG: smd:Smed_3771 NADP oxidoreductase coenzyme F420-dependent; PFAM: NADP oxidoreductase, coenzyme F420-dependent; SPTR: NADP oxidoreductase coenzyme F420-dependent YP_004657126.1 PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase; KEGG: rrs:RoseRS_1804 hypothetical protein; SPTR: uncharacterized protein YP_004657127.1 KEGG: sli:Slin_6336 hypothetical protein; SPTR: uncharacterized protein YP_004657128.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: ttr:Tter_1997 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein YP_004657129.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: dtu:Dtur_0411 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Monosaccharide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related YP_004657130.1 PFAM: ABC transporter; COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: aac:Aaci_2903 inner-membrane translocator; PFAM: Bacterial inner-membrane translocator; SPTR: ABC transporter, membrane spanning protein (Ribose) YP_004657131.1 PFAM: family; Branched-chain amino acid transport system / permease component YP_004657132.1 COGs: COG4124 Beta-mannanase; InterPro IPR000805; KEGG: lby:Lbys_3427 mannan endo-1,4-beta-mannosidase; PFAM: Glycoside hydrolase, family 26; PRIAM: Mannan endo-1,4-beta-mannosidase; SPTR: Mannan endo-1,4-beta-mannosidase YP_004657133.1 PFAM: Glycosyl hydrolase 26; COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: lby:Lbys_3428 na+/solute symporter; PFAM: Sodium/solute symporter; SPTR: Na+/solute symporter YP_004657134.1 PFAM: Sodium:solute symporter family; COGs: COG2152 glycosylase; InterPro IPR007184; KEGG: psn:Pedsa_2973 glycosidase related protein; PFAM: Glycosidase, PH1107-related; SPTR: uncharacterized protein YP_004657135.1 PFAM: Domain of unknown function (DUF377); COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: sli:Slin_1327 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein YP_004657136.1 PFAM: Protein of unknown function (DUF820); COGs: COG2942 N-acyl-D-glucosamine 2-epimerase; InterPro IPR010819; KEGG: phe:Phep_3983 N-acylglucosamine 2-epimerase; PFAM: N-acylglucosamine 2-epimerase; SPTR: N-acylglucosamine 2-epimerase YP_004657137.1 PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); COGs: COG2730 Endoglucanase; InterPro IPR001547; KEGG: rmr:Rmar_0025 glycoside hydrolase 5; PFAM: Glycoside hydrolase, family 5; SPTR: Glycoside hydrolase 5 YP_004657138.1 PFAM: Cellulase (glycosyl hydrolase 5); InterPro IPR005181; KEGG: dfe:Dfer_0312 protein of unknown function DUF303 acetylesterase PFAM: Protein of unknown function DUF303, acetylesterase SPTR: uncharacterized protein YP_004657139.1 PFAM: Domain of unknown function (DUF303); COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: lby:Lbys_3530 aldo/keto reductase; PFAM: Aldo/keto reductase; SPTR: Aldo/keto reductase YP_004657140.1 PFAM: Aldo/keto reductase; COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: chu:CHU_1199 mechanosensitive ion channel component; PFAM: Mechanosensitive ion channel MscS; SPTR: Mechanosensitive ion channel component YP_004657141.1 PFAM: Mechanosensitive ion channel; COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR002529; KEGG: sli:Slin_0979 fumarylacetoacetate hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like; PRIAM: 5-carboxymethyl-2-hydroxymuconate Delta-isomerase; SPTR: Fumarylacetoacetate (FAA) hydrolase YP_004657142.1 PFAM: Fumarylacetoacetate (FAA) hydrolase; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: dfe:Dfer_2938 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23; manually curated YP_004657143.1 PFAM: Peptidase M23; COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: mtt:Ftrac_0980 peroxiredoxin; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PRIAM: Peroxiredoxin; SPTR: Peroxiredoxin; manually curated YP_004657144.1 PFAM: AhpC/TSA family; InterPro IPR008815; KEGG: psn:Pedsa_2595 hypothetical protein; PFAM: 23S rRNA-associated protein; SPTR: uncharacterized protein YP_004657145.1 PFAM: S23 ribosomal protein; COGs: COG3959 Transketolase N-terminal subunit; InterPro IPR005474; KEGG: lby:Lbys_1197 transketolase domaiN-containing protein; PFAM: Transketolase, N-terminal; PRIAM: Transketolase; SPTR: Transketolase domain-containing protein YP_004657146.1 PFAM: Transketolase, thiamine diphosphate binding domain; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: psn:Pedsa_2729 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein YP_004657147.1 PFAM: Protein of unknown function (DUF820); COGs: COG4637 ATPase; InterPro IPR003395; KEGG: aap:NT05HA_1643 RecF/RecN/SMC N domain; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: uncharacterized protein YP_004657148.1 PFAM: RecF/RecN/SMC N terminal domain; KEGG: aap:NT05HA_1642 hypothetical protein; SPTR: uncharacterized protein YP_004657149.1 COGs: COG3958 Transketolase C-terminal subunit; InterPro IPR005475:IPR005476; KEGG: dfe:Dfer_2935 transketolase central region; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: Transketolase; SPTR: Transketolase central region YP_004657150.1 PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_0974 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004657151.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: dfe:Dfer_2933 hypothetical protein; SPTR: uncharacterized protein YP_004657152.1 KEGG: dfe:Dfer_2932 hypothetical protein; SPTR: uncharacterized protein YP_004657153.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: sli:Slin_0503 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: Response regulator receiver protein YP_004657154.1 PFAM: LytTr DNA-binding domain; COGs: COG2176 DNA polymerase III alpha subunit (gram-positive type); InterPro IPR013520:IPR006055:IPR006054; KEGG: dfe:Dfer_5151 DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; PRIAM: DNA-directed DNA polymerase; SMART: Exonuclease; SPTR: DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit YP_004657155.1 PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family; COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: shg:Sph21_3655 regulatory protein TetR; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: TetR family transcriptional regulator YP_004657156.1 PFAM: Bacterial regulatory proteins, tetR family; COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: dfe:Dfer_2793 Zn-dependent hydrolase of the beta-lactamase fold-like protein; SPTR: Outer membrane protein YP_004657157.1 COGs: COG0694 Thioredoxin-like protein and domains; InterPro IPR001075; KEGG: sli:Slin_1109 nitrogen-fixing NifU domain protein; PFAM: NIF system FeS cluster assembly, NifU, C-terminal; SPTR: Nitrogen-fixing NifU domain protein YP_004657158.1 PFAM: NifU-like domain; COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR002744:IPR019591; KEGG: dfe:Dfer_4935 protein of unknown function DUF59; PFAM: ATPase-like, ParA/MinD; Protein of unknown function DUF59; SPTR: uncharacterized protein YP_004657159.1 PFAM: ParA/MinD ATPase like; Domain of unknown function DUF59; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: sli:Slin_2022 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004657160.1 PFAM: Major Facilitator Superfamily YP_004657161.1 COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_2776 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS YP_004657162.1 PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_2775 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004657163.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; KEGG: dfe:Dfer_2941 hypothetical protein; SPTR: uncharacterized protein YP_004657164.1 KEGG: dfe:Dfer_2942 hypothetical protein; SPTR: uncharacterized protein YP_004657165.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: dfe:Dfer_3119 beta-lactamase domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Beta-lactamase domain protein YP_004657166.1 PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain YP_004657167.1 COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: cao:Celal_2001 transcriptional repressor, copy family; PFAM: Penicillinase repressor; SPTR: Penicillinase repressor YP_004657168.1 PFAM: Penicillinase repressor; COGs: COG4219 Antirepressor regulating drug resistance predicted signal transduction N-terminal membrane component; InterPro IPR008756; KEGG: sli:Slin_3430 peptidase M56 BlaR1; PFAM: Peptidase M56, BlaR1; SPTR: Peptidase M56 BlaR1 YP_004657169.1 PFAM: BlaR1 peptidase M56 YP_004657170.1 KEGG: dfe:Dfer_1441 hypothetical protein; SPTR: uncharacterized protein YP_004657171.1 COGs: COG0495 Leucyl-tRNA synthetase; InterPro IPR002300:IPR015413:IPR013155:IPR002302; KEGG: sli:Slin_1712 leucyl-tRNA synthetase; PFAM: Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; Aminoacyl-tRNA synthetase, class Ia; Aminoacyl-tRNA synthetase, class I (M); PRIAM: Leucine--tRNA ligase; SPTR: Leucyl-tRNA synthetase; TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial YP_004657172.1 PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: sli:Slin_0341 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein YP_004657173.1 PFAM: Protein of unknown function (DUF820); COGs: COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase; InterPro IPR003329:IPR004528; KEGG: sli:Slin_2800 3-deoxy-D-manno-octulosonatecytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase; PRIAM: 3-deoxy-manno-octulosonate cytidylyltransferase; SPTR: 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase YP_004657174.1 PFAM: Cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR002523:IPR004488; KEGG: sli:Slin_2267 magnesium and cobalt transporter CorA; PFAM: Mg2+ transporter protein, CorA-like; SPTR: Magnesium and cobalt transport protein CorA; TIGRFAM: Magnesium/cobalt transport protein CorA YP_004657175.1 PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA); COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR013200:IPR000150:IPR006379; KEGG: dfe:Dfer_2852 Cof-like hydrolase; PFAM: HAD superfamily hydrolase-like, type 3; SPTR: Cof-like hydrolase; TIGRFAM: Cof protein; HAD-superfamily hydrolase, subfamily IIB YP_004657176.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB; COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: mtt:Ftrac_2184 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase YP_004657177.1 PFAM: Acyltransferase; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: sli:Slin_0741 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: Similar to Q4C2F1_CROWT Hypothetical protein YP_004657178.1 PFAM: Protein of unknown function (DUF820); KEGG: gym:GYMC10_2811 YvaD; SPTR: YvaD YP_004657179.1 COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: eat:EAT1b_0256 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR YP_004657180.1 PFAM: short chain dehydrogenase; InterPro IPR001647; KEGG: hch:HCH_03339 transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family YP_004657181.1 PFAM: Bacterial regulatory proteins, tetR family; KEGG: sli:Slin_1594 hypothetical protein; SPTR: uncharacterized protein YP_004657182.1 PFAM: START domain; COGs: COG0793 Periplasmic protease; InterPro IPR005151; KEGG: fps:FP1003 hypothetical protein; PFAM: Peptidase S41; SMART: Peptidase S41; SPTR: Peptidase, S41 family YP_004657183.1 PFAM: Peptidase S41; KEGG: sli:Slin_5896 hypothetical protein; SPTR: uncharacterized protein YP_004657184.1 KEGG: shg:Sph21_0744 hypothetical protein; SPTR: uncharacterized protein YP_004657185.1 COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: sli:Slin_0742 LmbE family protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR: LmbE family protein YP_004657186.1 PFAM: GlcNAc-PI de-N-acetylase; KEGG: cpi:Cpin_2851 hypothetical protein; SPTR: uncharacterized protein YP_004657187.1 PFAM: Glycosyl hydrolases family 2, TIM barrel domain; KEGG: sli:Slin_6342 hypothetical protein; SPTR: uncharacterized protein YP_004657188.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: sli:Slin_0732 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family YP_004657189.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: sli:Slin_0731 histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SPTR: Histidine kinase YP_004657190.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004657191.1 COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: mtt:Ftrac_1605 SPFH domain, band 7 family protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: SPFH domain, Band 7 family protein YP_004657192.1 PFAM: SPFH domain / Band 7 family; KEGG: sli:Slin_0728 hypothetical protein; SPTR: uncharacterized protein YP_004657193.1 PFAM: Tellurite resistance protein TerB; InterPro IPR001611:IPR003591; KEGG: lil:LA_3324 hypothetical protein; SPTR: uncharacterized protein YP_004657194.1 PFAM: Leucine Rich Repeat YP_004657195.1 InterPro IPR013216; KEGG: dfe:Dfer_1146 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11 YP_004657196.1 PFAM: Methyltransferase domain; KEGG: sli:Slin_2010 hypothetical protein; SPTR: uncharacterized protein YP_004657197.1 KEGG: sli:Slin_2009 hypothetical protein; SPTR: uncharacterized protein YP_004657198.1 COGs: COG0124 Histidyl-tRNA synthetase; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; InterPro IPR015807:IPR002314:IPR004154; KEGG: dfe:Dfer_1143 histidyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Anticodon-binding; PRIAM: Histidine--tRNA ligase; SPTR: Histidyl-tRNA synthetase; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup YP_004657199.1 PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase; COGs: COG0706 Preprotein translocase subunit YidC; HAMAP: Membrane protein oxaA; InterPro IPR019998:IPR020001:IPR001708; KEGG: sli:Slin_2014 membrane protein insertase; PFAM: Membrane insertion protein, OxaA/YidC; SPTR: Inner membrane protein oxaA; TIGRFAM: Membrane insertion protein, OxaA/YidC, core; Membrane insertion protein, OxoA/YidC, N-terminal YP_004657200.1 PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; membrane protein insertase, YidC/Oxa1 family, N-terminal domain; COGs: COG1158 Transcription termination factor; InterProIPR004665:IPR011112:IPR011113:IPR000194:IPR 011129:IPR003593; KEGG: dfe:Dfer_5202 transcription termination factor Rho; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, RNA-binding; Rho termination factor, N-terminal; SMART: Cold shock protein; ATPase, AAA+ type, core; SPTR: Transcription termination factor Rho; TIGRFAM: Transcription termination factor Rho YP_004657201.1 PFAM: Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho; COGs: COG0313 methyltransferase; InterPro IPR000878; KEGG: sli:Slin_3013 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; PFAM: Tetrapyrrole methylase; SPTR: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_004657202.1 PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: sli:Slin_3012 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein YP_004657203.1 PFAM: alpha/beta hydrolase fold; KEGG: dfe:Dfer_2155 hypothetical protein; SPTR: uncharacterized protein YP_004657205.1 COGs: COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); InterPro IPR005875:IPR003135; KEGG: dfe:Dfer_5765 phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; TIGRFAM: Phosphoribosylaminoimidazole carboxylase, ATPase subunit YP_004657206.1 PFAM: ATP-grasp domain; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurK protein YP_004657207.1 COGs: COG1252 NADH dehydrogenase FAD-containing subunit; InterPro IPR013027; KEGG: lby:Lbys_2555 fad-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: NADH dehydrogenase (ubiquinone); SPTR: FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_004657208.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: sli:Slin_4917 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: Band 7 protein YP_004657209.1 PFAM: SPFH domain / Band 7 family; InterPro IPR008538; KEGG: dfe:Dfer_4621 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein YP_004657210.1 PFAM: Protein of unknown function (DUF820); KEGG: sli:Slin_5175 hypothetical protein; SPTR: uncharacterized protein YP_004657211.1 COGs: COG0379 Quinolinate synthase; HAMAP: Quinolinate synthase A; InterPro IPR003473; KEGG: sli:Slin_5129 quinolinate synthetase complex, subunit alpha; PFAM: Quinolinate synthetase A; PRIAM: Quinolinate synthase; SPTR: Quinolinate synthase A; TIGRFAM: Quinolinate synthetase A YP_004657212.1 PFAM: Quinolinate synthetase A protein; TIGRFAM: quinolinate synthetase complex, A subunit YP_004657213.1 KEGG: dfe:Dfer_3149 hypothetical protein; SPTR: uncharacterized protein YP_004657214.1 PFAM: Nucleotidyl transferase; COGs: COG0759 conserved hypothetical protein; HAMAP: Protein of unknown function DUF37; InterPro IPR002696; KEGG: sli:Slin_1083 hypothetical protein; PFAM: Protein of unknown function DUF37; SPTR: UPF0161 protein Slin_1083; TIGRFAM: Protein of unknown function DUF37 YP_004657215.1 PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein YidD; KEGG: sli:Slin_4681 hypothetical protein; SPTR: uncharacterized protein YP_004657216.1 COGs: COG4185 conserved hypothetical protein; KEGG: pbs:Plabr_1004 hypothetical protein; SPTR: uncharacterized protein YP_004657217.1 PFAM: Zeta toxin YP_004657218.1 COGs: COG0447 Dihydroxynaphthoic acid synthase; InterPro IPR010198:IPR001753; KEGG: lby:Lbys_2851 1,4-dihydroxy-2-naphthoate synthase; PFAM: Crotonase, core; PRIAM: Naphthoate synthase; SPTR: 1,4-Dihydroxy-2-naphthoate synthase; TIGRFAM: Naphthoate synthase YP_004657219.1 PFAM: Enoyl-CoA hydratase/isomerase; TIGRFAM: naphthoate synthase (dihydroxynaphthoic acid synthetase); KEGG: sli:Slin_5826 hypothetical protein; SPTR: uncharacterized protein YP_004657220.1 COGs: COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); HAMAP: NAD(P)H-quinone oxidoreductase subunit 1; InterPro IPR001694; KEGG: sli:Slin_2443 NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone oxidoreductase, subunit 1; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit H 1 YP_004657221.1 PFAM: NADH dehydrogenase YP_004657222.1 KEGG: mlo:mll1436 hypothetical protein; SPTR: uncharacterized protein YP_004657223.1 COGs: COG1690 conserved hypothetical protein; InterPro IPR001233; KEGG: sli:Slin_1492 hypothetical protein; PFAM: Uncharacterised protein family UPF0027; SPTR: uncharacterized protein YP_004657224.1 PFAM: Uncharacterized protein family UPF0027; COGs: COG0525 Valyl-tRNA synthetase; HAMAP: Valyl-tRNA synthetase; InterPro IPR002303:IPR002300:IPR013155:IPR019499; KEGG: dfe:Dfer_4095 valyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ia; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; Valyl-tRNA synthetase, class Ia, tRNA binding arm; PRIAM: Valine--tRNA ligase; SPTR: Valyl-tRNA synthetase; TIGRFAM: Valyl-tRNA synthetase, class Ia YP_004657225.1 PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase; KEGG: lby:Lbys_2119 hypothetical protein; SPTR: uncharacterized protein YP_004657226.1 COGs: COG1522 Transcriptional regulators; InterPro IPR019887:IPR019888; KEGG: dfe:Dfer_3786 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type; SPTR: Transcriptional regulator, AsnC family YP_004657227.1 PFAM: AsnC family; COGs: COG0241 Histidinol phosphatase and related phosphatase; InterPro IPR006543:IPR006549:IPR005834; KEGG: sli:Slin_5528 hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Hydrolase, HAD-superfamily, subfamily IIIA; TIGRFAM: Histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA YP_004657228.1 PFAM: Polynucleotide kinase 3 phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase domain YP_004657229.1 COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183; KEGG: dfe:Dfer_3427 Orn/DAP/Arg decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Orn/DAP/Arg decarboxylase 2 YP_004657230.1 PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; COGs: COG0554 Glycerol kinase; HAMAP: Glycerol kinase; InterPro IPR005999:IPR018484:IPR018485; KEGG: dfe:Dfer_3902 glycerol kinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; PRIAM: Glycerol kinase; SPTR: Glycerol kinase; TIGRFAM: Glycerol kinase YP_004657231.1 PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: glycerol kinase; COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: sli:Slin_3005 fatty acid hydroxylase; PFAM: Fatty acid hydroxylase; SPTR: Fatty acid hydroxylase YP_004657232.1 PFAM: Fatty acid hydroxylase superfamily; COGs: COG0009 translation factor (SUA5); InterPro IPR004388:IPR006070:IPR005145; KEGG: sli:Slin_1394 SUA5/YciO/YrdC/YwlC family protein; PFAM: Sua5/YciO/YrdC, N-terminal; SUA5; SPTR: Sua5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC YP_004657233.1 PFAM: yrdC domain; SUA5 domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; InterPro IPR002035; KEGG: dfe:Dfer_5483 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: von Willebrand factor type A YP_004657234.1 PFAM: von Willebrand factor type A domain; COGs: COG0531 Amino acid transporter; InterPro IPR004757:IPR004841; KEGG: shg:Sph21_0667 ethanolamine transporter; PFAM: Amino acid permease-associated region; SPTR: Ethanolamine transporter; TIGRFAM: Ethanolamine permease YP_004657235.1 PFAM: Amino acid permease; TIGRFAM: ethanolamine permease; COGs: COG4974 Site-specific recombinase XerD; HAMAP: Tyrosine recombinase xerC; InterPro IPR011932:IPR004107:IPR002104; KEGG: dfe:Dfer_2797 tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Tyrosine recombinase xerC 1; TIGRFAM: Tyrosine recombinase XerD YP_004657236.1 PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase; TIGRFAM: tyrosine recombinase XerD; KEGG: sli:Slin_2437 hypothetical protein; SPTR: uncharacterized protein YP_004657237.1 COGs: COG0520 Selenocysteine lyase; InterPro IPR000192; KEGG: sli:Slin_2438 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; SPTR: Aminotransferase class V YP_004657238.1 PFAM: Aminotransferase class-V; KEGG: sli:Slin_2440 hypothetical protein; SPTR: uncharacterized protein YP_004657239.1 COGs: COG2062 Phosphohistidine phosphatase SixA; InterPro IPR013078; KEGG: dfe:Dfer_2799 phosphohistidine phosphatase, SixA; PFAM: Phosphoglycerate mutase; SPTR: phosphohistidine phosphatase, SixA YP_004657240.1 PFAM: Phosphoglycerate mutase; TIGRFAM: phosphohistidine phosphatase SixA; COGs: COG4108 Peptide chain release factor RF-3; InterPro IPR004548:IPR005225:IPR000795; KEGG: sli:Slin_1118 peptide chain release factor 3; PFAM: Protein synthesis factor, GTP-binding; SPTR: Peptide chain release factor 3; TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein YP_004657241.1 PFAM: Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; peptide chain release factor 3; COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR010976:IPR010972:IPR006402:IPR005834; KEGG: sli:Slin_2877 beta-phosphoglucomutase; PFAM: Haloacid dehalogenase-like hydrolase; PRIAM: Beta-phosphoglucomutase; SPTR: Beta-phosphoglucomutase; TIGRFAM: Beta-phosphoglucomutase; Beta-phosphoglucomutase hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3 YP_004657242.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: beta-phosphoglucomutase; haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; beta-phosphoglucomutase hydrolase; InterPro IPR003737; KEGG: dfe:Dfer_3412 LmbE family protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR: LmbE family protein YP_004657243.1 PFAM: GlcNAc-PI de-N-acetylase YP_004657244.1 InterPro IPR005181; KEGG: sli:Slin_5096 hypothetical protein; PFAM: Protein of unknown function DUF303, acetylesterase SPTR: uncharacterized protein YP_004657245.1 PFAM: Domain of unknown function (DUF303); COGs: COG0647 sugar phosphatase of the HAD superfamily; InterPro IPR006357:IPR005834; KEGG: dfe:Dfer_3644 HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IIA; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA YP_004657246.1 TIGRFAM: Haloacid Dehalogenase Superfamily Class (subfamily) IIA; HAD-superfamily class IIA hydrolase, TIGR01459; KEGG: sli:Slin_5140 hypothetical protein; SPTR: uncharacterized protein YP_004657247.1 COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; InterPro IPR000713:IPR013221; KEGG: dfe:Dfer_4117 Mur ligase middle domain protein; PFAM: Mur ligase, N-terminal; Mur ligase, central; PRIAM: UDP-N-acetylmuramate--L-alanine ligase; SPTR: Mur ligase middle domain protein YP_004657248.1 PFAM: Mur ligase, catalytic domain; Mur ligase middle domain; COGs: COG1214 Inactive homolog of metal-dependent protease molecular chaperone; InterPro IPR000905; KEGG: dfe:Dfer_3849 peptidase M22 glycoprotease; PFAM: Peptidase M22, glycoprotease; SPTR: Peptidase M22 glycoprotease; TIGRFAM: universal protein YeaZ YP_004657249.1 PFAM: Glycoprotease; TIGRFAM: universal bacterial protein YeaZ YP_004657250.1 COGs: COG1520 FOG: WD40-like repeat; InterPro IPR002372:IPR018391; KEGG: mpi:Mpet_1134 pyrrolo-quinoline quinone; PFAM: Pyrrolo-quinoline quinone repeat; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Pyrrolo-quinoline quinone; tmRNA as predicted by Rfam (RF00023), score 132.00 YP_004657251.1 PFAM: PQQ enzyme repeat YP_004657253.1 KEGG: npu:Npun_F6119 transposase; SPTR: uncharacterized protein YP_004657257.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595:IPR001808; KEGG: sli:Slin_6930 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; SPTR: Transcriptional regulator, Crp/Fnr family YP_004657258.1 PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR008030; KEGG: mtt:Ftrac_1330 NmrA family protein; SPTR: NmrA family protein YP_004657259.1 PFAM: NmrA-like family; KEGG: fjo:Fjoh_3341 glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004657260.1 COGs: COG2323 membrane protein; InterPro IPR007353; KEGG: fba:FIC_00896 protein of unknown function DUF421; PFAM: Protein of unknown function DUF421; SPTR: uncharacterized protein YP_004657261.1 PFAM: Protein of unknown function (DUF421) YP_004657262.1 PFAM: Integral membrane protein TerC family; COGs: COG4430 conserved hypothetical protein; KEGG: zpr:ZPR_3958 hypothetical protein; SPTR: uncharacterized protein YP_004657263.1 COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; KEGG: dfe:Dfer_0232 ATP-dependent exoDNAse (exonuclease V); SPTR: ATP-dependent exoDNAse (Exonuclease V) YP_004657264.1 PFAM: PIF1 helicase; COGs: COG2905 signal-transduction protein containing cAMP-binding and CBS domains; InterPro IPR000644; KEGG: sli:Slin_1462 signal transduction protein with CBS domains; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; SPTR: signal transduction protein with CBS domains YP_004657265.1 PFAM: CBS domain; COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: sli:Slin_1463 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase YP_004657266.1 PFAM: NUDIX domain; KEGG: sli:Slin_1464 hypothetical protein; SPTR: uncharacterized protein YP_004657267.1 COGs: COG0669 Phosphopantetheine adenylyltransferase; HAMAP: Coenzyme A biosynthesis protein; InterPro IPR001980:IPR004821:IPR004820; KEGG: sli:Slin_1465 pantetheine-phosphate adenylyltransferase; PFAM: Cytidylyltransferase; PRIAM: Pantetheine-phosphate adenylyltransferase; SPTR: Phosphopantetheine adenylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related YP_004657268.1 PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain; KEGG: dfe:Dfer_0389 hypothetical protein; SPTR: uncharacterized protein YP_004657269.1 COGs: COG4464 Capsular polysaccharide biosynthesis protein; InterPro IPR004013; KEGG: chu:CHU_0001 capsular polysaccharide biosynthesis protein; PFAM: PHP, C-terminal; SPTR: Capsular polysaccharide biosynthesis protein YP_004657270.1 COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: dfe:Dfer_2965 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related YP_004657271.1 PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_2907 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS YP_004657272.1 PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_2906 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004657273.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR019546:IPR000683; KEGG: psn:Pedsa_0077 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: Oxidoreductase domain protein YP_004657274.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; KEGG: sli:Slin_4197 DinB family protein; SPTR: DinB family protein YP_004657275.1 PFAM: DinB family; COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); InterPro IPR004655:IPR013751:IPR013747; KEGG: dfe:Dfer_5065 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase III; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase 3 3; TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH) YP_004657276.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; COGs: COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase PurS component; InterPro IPR003850; KEGG: sli:Slin_3016 phosphoribosylformylglycinamidine synthase, PurS; PFAM: Phosphoribosylformylglycinamidine synthetase, PurS subunit; SPTR: Phosphoribosylformylglycinamidine synthase, PurS protein; TIGRFAM: Phosphoribosylformylglycinamidine synthetase, PurS subunit YP_004657277.1 PFAM: Phosphoribosylformylglycinamidine (FGAM) synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase, purS protein; COGs: COG1183 Phosphatidylserine synthase; InterPro IPR004533:IPR000462; KEGG: dfe:Dfer_5066 CDP-diacylglycerol/serineO-phosphatidyltransfera se; PFAM: CDP-alcohol phosphatidyltransferase; SPTR:CDP-diacylglycerol-serine-O-phosphatidyltransf erase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase YP_004657278.1 PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sli:Slin_3014 beta-lactamase; SPTR: Beta-lactamase domain protein YP_004657279.1 PFAM: Metallo-beta-lactamase superfamily; COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: chu:CHU_3379 hypothetical protein; PFAM: Conserved hypothetical protein CHP00730; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00730 YP_004657280.1 PFAM: Possible lysine decarboxylase; TIGRFAM: TIGR00725 family protein; TIGR00730 family protein; KEGG: sli:Slin_4251 membrane protein; SPTR: Membrane protein YP_004657281.1 KEGG: dfe:Dfer_2810 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004657282.1 KEGG: dfe:Dfer_2811 hypothetical protein; SPTR: uncharacterized protein YP_004657283.1 COGs: COG2192 carbamoyl transferase NodU family; InterPro IPR003696; KEGG: dfe:Dfer_2812 carbamoyltransferase; PFAM: Carbamoyltransferase; SPTR: Carbamoyltransferase YP_004657284.1 PFAM: Carbamoyltransferase; InterPro IPR001087; KEGG: ter:Tery_1681 hypothetical protein; PFAM: Lipase, GDSL; SPTR: uncharacterized protein YP_004657285.1 PFAM: GDSL-like Lipase/Acylhydrolase; COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: sli:Slin_4256 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; SPTR: Ppx/GppA phosphatase YP_004657286.1 PFAM: Ppx/GppA phosphatase; COGs: COG3503 membrane protein; KEGG: sli:Slin_2897 hypothetical protein; SPTR: uncharacterized protein YP_004657287.1 PFAM: Protein of unknown function (DUF1624); COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789; KEGG: dfe:Dfer_1630 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004657288.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3920 Signal transduction histidine kinase; InterPro IPR011495:IPR003594; KEGG: dfe:Dfer_1629 signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: Signal transduction histidine kinase YP_004657289.1 PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro IPR005182; KEGG: pgi:PG1471 hypothetical protein; PFAM: Protein of unknown function DUF304, prokaryotic transmembrane adjacent region; SPTR: uncharacterized protein YP_004657290.1 PFAM: Bacterial membrane flanked domain YP_004657291.1 KEGG: ppn:Palpr_1196 hypothetical protein; SPTR: uncharacterized protein YP_004657292.1 KEGG: sna:Snas_2969 hypothetical protein; SPTR: RDD domain containing protein YP_004657293.1 KEGG: ppn:Palpr_0095 hypothetical protein; SPTR: uncharacterized protein YP_004657294.1 COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: sli:Slin_1477 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; PRIAM: D-amino-acid dehydrogenase; SPTR: FAD dependent oxidoreductase YP_004657295.1 PFAM: FAD dependent oxidoreductase; KEGG: sli:Slin_1922 hypothetical protein; SPTR: uncharacterized protein YP_004657296.1 COGs: COG3938 Proline racemase; InterPro IPR008794; KEGG: tsi:TSIB_0630 proline racemase; PFAM: Proline racemase; PRIAM: Proline racemase; SPTR: Proline racemase YP_004657297.1 PFAM: Proline racemase; COGs: COG2423 ornithine cyclodeaminase mu-crystallin homolog; InterPro IPR003462; KEGG: tro:trd_0794 ornithine cyclodeaminase; PFAM: Ornithine cyclodeaminase/mu-crystallin; PRIAM: Ornithine cyclodeaminase; SPTR: Ornithine cyclodeaminase/mu-crystallin family protein YP_004657298.1 PFAM: Ornithine cyclodeaminase/mu-crystallin family; COGs: COG0040 ATP phosphoribosyltransferase; HAMAP: ATP phosphoribosyltransferase; Histidine biosynthesis HisG, ATP phosphoribosyltransferase, subgroup; InterPro IPR020621:IPR013820:IPR013115; KEGG: sli:Slin_1783 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase, catalytic region; Histidine biosynthesis HisG, C-terminal; PRIAM: ATP phosphoribosyltransferase; SPTR: ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, catalytic region; Histidine biosynthesis HisG, C-terminal YP_004657299.1 PFAM: HisG, C-terminal domain; ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, C-terminal domain; ATP phosphoribosyltransferase; COGs: COG0141 Histidinol dehydrogenase; HAMAP: Histidinol dehydrogenase, prokaryotic-type; InterPro IPR012131; KEGG: sli:Slin_1784 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase, prokaryotic-type; PRIAM: Histidinol dehydrogenase; SPTR: Histidinol dehydrogenase; TIGRFAM: Histidinol dehydrogenase, prokaryotic-type YP_004657300.1 PFAM: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; COGs: COG3950 ATP-binding protein involved in virulence; InterPro IPR003593; KEGG: sli:Slin_0641 ATPase AAA; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein YP_004657301.1 PFAM: RecF/RecN/SMC N terminal domain; KEGG: spl:Spea_4172 hypothetical protein; SPTR: uncharacterized protein YP_004657303.1 COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; HAMAP: Histidinol-phosphate aminotransferase; InterPro IPR005861:IPR004839; KEGG: sli:Slin_1795 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/II; PRIAM: Histidinol-phosphate transaminase; SPTR: Histidinol-phosphate aminotransferase; TIGRFAM: Histidinol-phosphate aminotransferase YP_004657304.1 PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; KEGG: sli:Slin_1796 hypothetical protein; SPTR: uncharacterized protein YP_004657305.1 COGs: COG0240 Glycerol-3-phosphate dehydrogenase; InterPro IPR011128:IPR006109; KEGG: dfe:Dfer_2864 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal; NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; PRIAM: Glycerol-3-phosphate dehydrogenase (NAD(P)(+)); SPTR: Glycerol-3-phosphate dehydrogenase [NAD(P)+] YP_004657306.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YP_004657307.1 InterPro IPR011701; KEGG: sli:Slin_3636 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004657308.1 PFAM: Major Facilitator Superfamily; InterPro IPR011467; KEGG: dfe:Dfer_3633 protein of unknown function DUF1573; PFAM: Protein of unknown function DUF1573; SPTR: uncharacterized protein YP_004657309.1 PFAM: Protein of unknown function (DUF1573); COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: dfe:Dfer_3565 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase YP_004657310.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: dfe:Dfer_3566 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family YP_004657311.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR003313:IPR000005:IPR018060; KEGG: phe:Phep_2431 AraC protein arabinose-binding/dimerisation; PFAM: Helix-turn-helix, AraC type; AraC protein, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator YP_004657312.1 PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2160 L-arabinose isomerase; KEGG: phe:Phep_2430 L-arabinose isomerase; SPTR: L-arabinose isomerase YP_004657313.1 PFAM: L-arabinose isomerase; COGs: COG1066 ATP-dependent serine protease; InterPro IPR004504:IPR003593; KEGG: dfe:Dfer_4772 DNA repair protein RadA; SMART: ATPase, AAA+ type, core; SPTR: DNA repair protein radA; TIGRFAM: DNA repair protein RadA YP_004657314.1 PFAM: KaiC; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: DNA repair protein RadA; COGs: COG3967 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein); InterPro IPR002198; KEGG: cpi:Cpin_2130 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR YP_004657315.1 PFAM: short chain dehydrogenase; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_2735 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related YP_004657316.1 PFAM: ABC transporter; COGs: COG1373 ATPase (AAA+ superfamily); KEGG: pph:Ppha_2828 ATPase (AAA+ superfamily)-like protein; SPTR: uncharacterized protein YP_004657317.1 KEGG: chu:CHU_0806 hypothetical protein; SPTR: uncharacterized protein YP_004657318.1 KEGG: lby:Lbys_0957 hypothetical protein; SPTR: uncharacterized protein YP_004657319.1 KEGG: lby:Lbys_0958 hypothetical protein; SPTR: uncharacterized protein YP_004657320.1 KEGG: mtt:Ftrac_1316 hypothetical protein; SPTR: uncharacterized protein YP_004657321.1 KEGG: chu:CHU_1451 hypothetical protein; SPTR: uncharacterized protein YP_004657322.1 InterPro IPR000595; KEGG: lby:Lbys_0959 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding protein YP_004657323.1 PFAM: Cyclic nucleotide-binding domain; InterPro IPR011637; KEGG: phe:Phep_1775 DoxX family protein; PFAM: DoxX; SPTR: DoxX family protein YP_004657324.1 PFAM: DoxX; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: shg:Sph21_2105 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family YP_004657325.1 PFAM: Cyclic nucleotide-binding domain; COGs: COG2312 Erythromycin esterase homolog; InterPro IPR007815; KEGG: lsp:Bsph_4494 erythromycin esterase-like protein; PFAM: Erythromycin esterase; SPTR: Erythromycin esterase-like protein YP_004657326.1 PFAM: Erythromycin esterase; InterPro IPR013096; KEGG: rxy:Rxyl_0884 cupin 2, barrel; PFAM: Cupin 2, conserved barrel; SPTR: Cupin 2 conserved barrel domain protein YP_004657327.1 PFAM: Cupin domain YP_004657328.1 KEGG: nhl:Nhal_3969 hypothetical protein; SPTR: uncharacterized protein YP_004657329.1 InterPro IPR018306; KEGG: dol:Dole_0905 restriction enzyme; PFAM: helicase A859L; SPTR: restriction enzyme YP_004657330.1 PFAM: T5orf172 domain; InterPro IPR011639; KEGG: atm:ANT_31690 hypothetical protein; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: uncharacterized protein YP_004657331.1 PFAM: Eco57I restriction endonuclease; KEGG: dol:Dole_0903 type III restriction system methylase; SPTR: Type III restriction system methylase YP_004657332.1 InterPro IPR010394; KEGG: sli:Slin_5585 5'-nucleotidase; PFAM: 5-nucleotidase; PRIAM: 5'-nucleotidase; SPTR: 5'-nucleotidase YP_004657333.1 PFAM: 5'-nucleotidase; COGs: COG3324 protein related to lactoylglutathione lyase; InterPro IPR004360; KEGG: gvi:glr1565 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase YP_004657334.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG2958 conserved hypothetical protein; InterPro IPR007468; KEGG: cch:Cag_1717 hypothetical protein; PFAM: Protein of unknown function DUF511; SPTR: uncharacterized protein YP_004657335.1 PFAM: Protein of unknown function (DUF511); InterPro IPR001387; KEGG: dfe:Dfer_2636 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family YP_004657336.1 PFAM: Helix-turn-helix; COGs: COG0146 N-methylhydantoinase B/acetone carboxylase alpha subunit; InterPro IPR008040:IPR002821:IPR003692; KEGG: dfe:Dfer_4282 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase; Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal; PRIAM: 5-oxoprolinase (ATP-hydrolyzing); SPTR: 5-oxoprolinase (ATP-hydrolyzing) YP_004657337.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinase/oxoprolinase N-terminal region; InterPro IPR019860; KEGG: sli:Slin_6627 gliding motility-associated ABC transporter permease GldF; SPTR: Gliding motility-associated ABC transporter permease GldF; TIGRFAM: Gliding motility-associated ABC transporter permease GldF YP_004657338.1 TIGRFAM: gliding motility-associated ABC transporter permease GldF; KEGG: dfe:Dfer_4469 hypothetical protein; SPTR: uncharacterized protein YP_004657339.1 COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_4049 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related YP_004657340.1 PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter; COGs: COG0608 Single-stranded DNA-specific exonuclease; InterPro IPR004610:IPR001667:IPR003156; KEGG: dfe:Dfer_4050 single-stranded-DNA-specific exonuclease RecJ; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; SPTR: Single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease YP_004657341.1 PFAM: DHH family; DHHA1 domain; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; COGs: COG1748 Saccharopine dehydrogenase and related protein; InterPro IPR005097; KEGG: dfe:Dfer_5033 saccharopine dehydrogenase; PFAM: Saccharopine dehydrogenase; SPTR: Saccharopine dehydrogenase YP_004657342.1 PFAM: Saccharopine dehydrogenase; InterPro IPR008000; KEGG: sli:Slin_0311 hypothetical protein; PFAM: Rhamnose mutarotase; SPTR: uncharacterized protein YP_004657343.1 PFAM: Domain of unknown function (DUF718); KEGG: sli:Slin_2214 hypothetical protein; SPTR: uncharacterized protein YP_004657344.1 InterPro IPR012489; KEGG: sli:Slin_2215 nuclease A inhibitor; PFAM: Nuclease A inhibitor-like; SPTR: Nuclease A inhibitor family protein YP_004657345.1 PFAM: Nuclease A inhibitor-like protein; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: fbc:FB2170_10611 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; PRIAM: Aldehyde dehydrogenase (NADP(+)); SPTR: Aldehyde dehydrogenase YP_004657346.1 PFAM: Aldehyde dehydrogenase YP_004657347.1 KEGG: sli:Slin_5814 hypothetical protein; SPTR: uncharacterized protein YP_004657348.1 KEGG: sli:Slin_1358 hypothetical protein; SPTR: uncharacterized protein YP_004657349.1 manually curated YP_004657350.1 PFAM: Cna protein B-type domain; KEGG: sli:Slin_1897 hypothetical protein; SPTR: uncharacterized protein YP_004657351.1 COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: sli:Slin_3201 cell cycle protein; PFAM: Cell cycle protein; SPTR: Cell cycle protein YP_004657352.1 PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR017790:IPR005311:IPR001460; KEGG: dfe:Dfer_2015 penicillin-binding protein 2; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Penicillin-binding protein 2; TIGRFAM: Penicillin-binding protein 2 YP_004657353.1 PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2; COGs: COG3386 Gluconolactonase; InterPro IPR013658; KEGG: dfe:Dfer_2426 gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region; PRIAM: Gluconolactonase; SPTR: Gluconolactonase YP_004657354.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: sli:Slin_3605 lipoprotein; SPTR: lipoprotein YP_004657355.1 COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR010231:IPR000825; KEGG: dfe:Dfer_2575 cysteine desulfurase activator complex subunit SufB; PFAM: SUF system FeS cluster assembly, SufBD; SPTR: FeS assembly protein SufB; TIGRFAM: SUF system FeS cluster assembly, SufB YP_004657356.1 PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB; COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR010046:IPR006656:IPR006657; KEGG: dfe:Dfer_2667 oxidoreductase alpha (molybdopterin) subunit; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding region; PRIAM: Nitrate reductase; SPTR: Oxidoreductase alpha (Molybdopterin) subunit; TIGRFAM: Oxidoreductase alpha (molybdopterin) subunit YP_004657357.1 PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; InterPro IPR008009:IPR006644; KEGG: dfe:Dfer_3550 dystroglycan-type cadherin domain protein; PFAM: Ig; SMART: Dystroglycan-type cadherin-like; SPTR: Dystroglycan-type cadherin domain protein YP_004657358.1 PFAM: Beta-galactosidase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: dfe:Dfer_4066 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004657359.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: dfe:Dfer_4067 protein of unknown function DUF323; PFAM: Sulphatase-modifying factor; SPTR: uncharacterized protein YP_004657360.1 PFAM: Formylglycine-generating sulfatase enzyme; KEGG: sli:Slin_5366 hypothetical protein; SPTR: uncharacterized protein YP_004657361.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: sli:Slin_5365 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein YP_004657362.1 PFAM: ABC transporter; COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR003953; KEGG: psn:Pedsa_1775 FAD dependent oxidoreductase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; SPTR: FAD dependent oxidoreductase YP_004657363.1 PFAM: FAD binding domain; COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: dfe:Dfer_2887 glucose/sorbosone dehydrogenase-like protein; SPTR: Glucose/sorbosone dehydrogenase-like protein YP_004657364.1 PFAM: Glucose / Sorbosone dehydrogenase; COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006158:IPR005129:IPR006099; KEGG: sli:Slin_2256 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding; ArgK protein; PRIAM: Methylmalonyl-CoA mutase; SPTR: Methylmalonyl-CoA mutase YP_004657365.1 PFAM: ArgK protein; Methylmalonyl-CoA mutase; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase C-terminal domain; COGs: COG0858 Ribosome-binding factor A; HAMAP: Ribosome-binding factor A; InterPro IPR000238; KEGG: sli:Slin_0998 ribosome-binding factor A; PFAM: Ribosome-binding factor A; SPTR: Ribosome-binding factor A; TIGRFAM: Ribosome-binding factor A YP_004657366.1 PFAM: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; COGs: COG0077 Prephenate dehydratase; InterPro IPR010957:IPR020822:IPR001086:IPR002912; KEGG: lby:Lbys_0057 chorismate mutase; prephenate dehydratase; PFAM: Prephenate dehydratase; Chorismate mutase, type II; Amino acid-binding ACT; SPTR: Chorismate mutase; prephenate dehydratase; TIGRFAM: Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain YP_004657367.1 PFAM: Prephenate dehydratase; Chorismate mutase type II; ACT domain; TIGRFAM: chorismate mutase domain of proteobacterial P-protein, clade 2; COGs: COG0073 EMAP domain; InterPro IPR008231:IPR002547; KEGG: shg:Sph21_1068 export-related chaperone CsaA; PFAM: tRNA-binding region; SPTR: Export-related chaperone CsaA; TIGRFAM: Secretion chaperone CsaA YP_004657368.1 PFAM: tRNA binding domain; TIGRFAM: export-related chaperone CsaA; COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015883; KEGG: sli:Slin_4336 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Beta-N-acetylhexosaminidase YP_004657369.1 PFAM: Glycosyl hydrolase 20, catalytic domain; KEGG: dfe:Dfer_2584 hypothetical protein; SPTR: uncharacterized protein YP_004657370.1 Bacterial RNase P class A as predicted by Rfam (RF00010), score 236.30 YP_004657371.1 PFAM: OmpA family; COGs: COG4188 dienelactone hydrolase; KEGG: sli:Slin_3493 dienelactone hydrolase-like protein; SPTR: Dienelactone hydrolase-like protein YP_004657372.1 PFAM: isoform II; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_6424 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004657373.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_6424 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004657374.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; KEGG: sli:Slin_5589 phage repressor; SPTR: phage repressor YP_004657376.1 InterPro IPR010093; TIGRFAM: Excisionase/Xis, DNA-binding YP_004657377.1 TIGRFAM: DNA binding domain, excisionase YP_004657378.1 KEGG: fps:FP0626 hypothetical protein; SPTR: uncharacterized protein YP_004657379.1 Prodigal; manually curated YP_004657380.1 COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR004546:IPR003356:IPR000055; KEGG: ana:alr0499 type I site-specific deoxyribonuclease; PFAM: DNA methylase, adenine-specific; Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Type I site-specific deoxyribonuclease; TIGRFAM: Restriction endonuclease, type I, EcoRI, M subunit YP_004657381.1 PFAM: N-6 DNA Methylase; Type I restriction modification DNA specificity domain; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM); COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR004473:IPR007409:IPR006935:IPR014001; KEGG: dfe:Dfer_5242 type I site-specific deoxyribonuclease, HsdR family; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; PRIAM: Type I site-specific deoxyribonuclease; SMART: DEAD-like helicase, N-terminal; SPTR: Type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit YP_004657382.1 PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type I restriction and modification enzyme - subunit R C terminal; Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; KEGG: sun:SUN_2300 hypothetical protein; SPTR: uncharacterized protein YP_004657383.1 PFAM: Protein of unknown function (DUF2493) YP_004657385.1 InterPro IPR014944; PFAM: Protein of unknown function DUF1813, HSP20-like YP_004657386.1 PFAM: HSP20-like domain of unknown function (DUF1813); KEGG: sli:Slin_4186 hypothetical protein; SPTR: uncharacterized protein YP_004657389.1 KEGG: sli:Slin_6908 hypothetical protein; SPTR: uncharacterized protein YP_004657392.1 KEGG: fjo:Fjoh_3184 hypothetical protein; SPTR: uncharacterized protein YP_004657393.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: fjo:Fjoh_2324 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Helix-turn-helix-domain containing protein, AraC type; manually curated YP_004657394.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: cpi:Cpin_0969 hypothetical protein; SPTR: uncharacterized protein YP_004657395.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: ana:alr1722 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Alr1722 protein YP_004657396.1 PFAM: short chain dehydrogenase; KEGG: amr:AM1_D0068 hypothetical protein; SPTR: uncharacterized protein YP_004657398.1 COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase); InterPro IPR019759; KEGG: chu:CHU_3076 SOS mutagenesis protein UmuD; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: SOS response UmuD protein, Serine peptidase, MEROPS family S24 YP_004657399.1 PFAM: Peptidase S24-like; COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; InterPro IPR001126; KEGG: ppn:Palpr_2947 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like; PRIAM: DNA-directed DNA polymerase; SPTR: DNA-directed DNA polymerase YP_004657400.1 PFAM: impB/mucB/samB family C-terminal; impB/mucB/samB family; KEGG: aae:aq_561 recombination protein RecN YP_004657401.1 KEGG: chu:CHU_0033 hypothetical protein; SPTR: uncharacterized protein YP_004657404.1 COGs: COG1988 membrane-bound metal-dependent hydrolase; InterPro IPR007404; KEGG: gca:Galf_0876 membrane-bound metal-dependent hydrolase; PFAM: Protein of unknown function DUF457, transmembrane; SPTR: uncharacterized protein YP_004657405.1 PFAM: Predicted membrane-bound metal-dependent hydrolase (DUF457); COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104:IPR011579; KEGG: sgy:Sgly_2273 tyrosine recombinase XerC; PFAM: Integrase, catalytic core, phage; ATPase domain, prokaryote; SPTR: Tyrosine recombinase xerC 2 YP_004657406.1 PFAM: Phage integrase; COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119:IPR006120; KEGG: sli:Slin_4835 resolvase; PFAM: Resolvase, N-terminal; Resolvase, helix-turn-helix region; SPTR: Resolvase domain protein YP_004657407.1 PFAM: Resolvase, N terminal domain; Helix-turn-helix domain of resolvase YP_004657409.1 SPTR: Phage integrase; manually curated YP_004657410.1 PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; COGs: COG3011 conserved hypothetical protein; InterPro IPR007263; KEGG: chu:CHU_2470 hypothetical protein; PFAM: thiol-disulphide oxidoreductase DCC; SPTR: uncharacterized protein YP_004657411.1 PFAM: Protein of unknown function, DUF393; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: sli:Slin_3597 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23; manually curated YP_004657412.1 PFAM: Peptidase M23; COGs: COG2996 conserved hypothetical protein; KEGG: bsa:Bacsa_3338 hypothetical protein; SPTR: uncharacterized protein YP_004657413.1 InterPro IPR006311:IPR006076; KEGG: dfe:Dfer_4743 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase YP_004657414.1 PFAM: FAD dependent oxidoreductase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; InterPro IPR006175; KEGG: gym:GYMC10_0704 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP YP_004657415.1 PFAM: Endoribonuclease L-PSP; COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR011650; KEGG: sli:Slin_4763 amidohydrolase; PFAM: Peptidase M20, dimerisation; SPTR: Amidohydrolase YP_004657416.1 PFAM: Peptidase dimerisation domain; TIGRFAM: amidohydrolase; COGs: COG2610 H+/gluconate symporter and related permease; InterPro IPR003474; KEGG: dfe:Dfer_1028 gluconate transporter; PFAM: Gluconate transporter; SPTR: Gluconate transporter; TIGRFAM: Gluconate transporter YP_004657417.1 PFAM: GntP family permease; TIGRFAM: gluconate transporter; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: sli:Slin_1134 periplasmic binding protein; PFAM: Periplasmic binding protein; SPTR: Periplasmic binding protein YP_004657418.1 PFAM: Periplasmic binding protein; KEGG: sli:Slin_4922 hypothetical protein; SPTR: uncharacterized protein YP_004657419.1 KEGG: rba:RB9620 hypothetical protein; SPTR: uncharacterized protein YP_004657420.1 manually curated YP_004657421.1 PFAM: Bacterial sugar transferase; KEGG: ppn:Palpr_1085 hypothetical protein; SPTR: uncharacterized protein YP_004657422.1 KEGG: dfe:Dfer_4003 hypothetical protein; SPTR: uncharacterized protein YP_004657423.1 KEGG: sli:Slin_4924 hypothetical protein; SPTR: uncharacterized protein YP_004657424.1 SPTR: uncharacterized protein YP_004657425.1 KEGG: bvu:BVU_2900 transposase; SPTR: uncharacterized protein YP_004657426.1 PFAM: Transposase domain (DUF772); InterPro IPR003346; KEGG: sli:Slin_6004 transposase IS116/IS110/IS902 family protein; PFAM: Transposase, IS116/IS110/IS902; SPTR: Transposase IS116/IS110/IS902 family protein YP_004657427.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase; manually curated YP_004657428.1 PFAM: Glycosyl transferase 2; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sfu:Sfum_0790 group 1 glycosyl transferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1 YP_004657429.1 PFAM: Glycosyl transferases group 1; InterPro IPR006342; KEGG: ava:Ava_1042 methyltransferase FkbM; SPTR: Methyltransferase FkbM; TIGRFAM: Methyltransferase FkbM YP_004657430.1 TIGRFAM: methyltransferase, FkbM family; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: cpi:Cpin_4756 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1 YP_004657431.1 PFAM: Glycosyl transferases group 1; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: rle:RL0822 DegT family aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: Pleiotropic regulatory protein YP_004657432.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_004657433.1 InterPro IPR020022:IPR011063; KEGG: mmp:MMP1081 LPS biosynthesis protein WbpG; PFAM: PP-loop; SPTR: LPS biosynthesis protein WbpG; TIGRFAM: N-acetyl sugar amidotransferase YP_004657434.1 PFAM: ExsB; TIGRFAM: N-acetyl sugar amidotransferase; COGs: COG0107 Imidazoleglycerol-phosphate synthase; InterPro IPR006062; KEGG: abu:Abu_0690 imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: Histidine biosynthesis; SPTR: Imidazoleglycerol phosphate synthase, cyclase subunit YP_004657435.1 PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; COGs: COG0118 Glutamine amidotransferase; HAMAP: Imidazole glycerol phosphate synthase, subunit H; InterPro IPR010139:IPR000991; KEGG: geb:GM18_1442 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: Glutamine amidotransferase class-I, C-terminal; SPTR: Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; TIGRFAM: Imidazole glycerol phosphate synthase, subunit H YP_004657436.1 PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; KEGG: ppy:PPE_01146 hypothetical protein; SPTR: uncharacterized protein YP_004657437.1 InterPro IPR006342; KEGG: pmc:P9515_13901 hypothetical protein; SPTR: Methyltransferase FkbM family; TIGRFAM: Methyltransferase FkbM YP_004657438.1 InterPro IPR002797; KEGG: bpi:BPLAN_034 polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; SPTR: Probable lipopolysaccharide biosynthesis protein YP_004657439.1 PFAM: Polysaccharide biosynthesis protein; COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: mgm:Mmc1_2423 acetyltransferase; PFAM: Bacterial transferase hexapeptide repeat; SPTR: Acetyltransferase YP_004657440.1 PFAM: Bacterial transferase hexapeptide (three repeats); COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: mgm:Mmc1_2424 oxidoreductase domain-containing protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein YP_004657441.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; KEGG: ajs:Ajs_3024 hypothetical protein; SPTR: uncharacterized protein YP_004657442.1 PFAM: O-Antigen ligase; InterPro IPR003856; KEGG: sli:Slin_4936 lipopolysaccharide biosynthesis protein; PFAM: Lipopolysaccharide biosynthesis; SPTR: Lipopolysaccharide biosynthesis protein YP_004657443.1 PFAM: Chain length determinant protein; COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715:IPR019554; KEGG: sli:Slin_4937 polysaccharide export protein; PFAM: Soluble ligand binding domain; Polysaccharide export protein; SPTR: Polysaccharide export protein YP_004657444.1 PFAM: SLBB-domain like (DUF1017); Polysaccharide biosynthesis/export protein; SLBB domain; COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: sli:Slin_6226 amino acid permease-associated region; PFAM: Amino acid permease-associated region; SPTR: Amino acid permease-associated region YP_004657445.1 PFAM: Amino acid permease; COGs: COG2270 Permease of the major facilitator superfamily; KEGG: dfe:Dfer_0030 permease; SPTR: Permease YP_004657446.1 PFAM: Vacuole effluxer Atg22 like YP_004657447.1 PFAM: Transposase domain (DUF772); KEGG: sli:Slin_2548 hypothetical protein; SPTR: uncharacterized protein YP_004657448.1 KEGG: dfe:Dfer_5099 hypothetical protein; SPTR: uncharacterized protein YP_004657449.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_5100 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004657450.1 PFAM: Glycosyl transferase 2; COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: dfe:Dfer_5101 cyclic nucleotide-binding protein; PFAM: Acyltransferase 3; SPTR: Cyclic nucleotide-binding protein YP_004657451.1 PFAM: Acyltransferase; KEGG: dfe:Dfer_5102 hypothetical protein; SPTR: uncharacterized protein YP_004657452.1 COGs: COG3958 Transketolase C-terminal subunit; InterPro IPR005475; KEGG: dfe:Dfer_5103 transketolase central region; PFAM: Transketolase-like, pyrimidine-binding domain; SPTR: Transketolase central region YP_004657453.1 PFAM: Transketolase, pyrimidine binding domain; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR001173; KEGG: dfe:Dfer_5104 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Glycosyl transferase, family 2; SPTR: NAD-dependent epimerase/dehydratase YP_004657454.1 PFAM: NAD dependent epimerase/dehydratase; Glycosyl transferase 2; KEGG: cow:Calow_0919 hypothetical protein; SPTR: uncharacterized protein YP_004657455.1 COGs: COG3959 Transketolase N-terminal subunit; InterPro IPR005474; KEGG: dfe:Dfer_5105 transketolase domain protein; PFAM: Transketolase, N-terminal; PRIAM: Transketolase; SPTR: Transketolase domain protein YP_004657456.1 PFAM: Transketolase, thiamine diphosphate binding domain; COGs: COG5305 membrane protein; InterPro IPR003342; KEGG: dfe:Dfer_5106 membrane protein-like protein; PFAM: Glycosyl transferase, family 39; SPTR: Membrane protein-like protein YP_004657457.1 PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase YP_004657458.1 COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR002938:IPR000172; KEGG: dfe:Dfer_0230 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Monooxygenase, FAD-binding; SPTR: Glucose-methanol-choline oxidoreductase YP_004657459.1 PFAM: FAD binding domain; GMC oxidoreductase; InterPro IPR006311; KEGG: sli:Slin_2016 hypothetical protein; SPTR: uncharacterized protein YP_004657460.1 KEGG: cpi:Cpin_1738 PKD domain containing protein; SPTR: Fibronectin type III domain protein YP_004657461.1 COGs: COG1663 Tetraacyldisaccharide-1-P 4'-kinase; HAMAP: Tetraacyldisaccharide 4'-kinase; InterPro IPR003758; KEGG: sli:Slin_2019 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide 4'-kinase; PRIAM: Tetraacyldisaccharide 4'-kinase; SPTR: Tetraacyldisaccharide 4'-kinase; TIGRFAM: Tetraacyldisaccharide 4'-kinase YP_004657462.1 PFAM: Tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013342; KEGG: sli:Slin_2020 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; SPTR: Mandelate racemase/muconate lactonizing protein YP_004657463.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; TIGRFAM: o-succinylbenzoate synthase; COGs: COG2041 Sulfite oxidase; InterPro IPR000572; KEGG: cpi:Cpin_2409 oxidoreductase molybdopterin binding; PFAM: Oxidoreductase, molybdopterin binding; SPTR: Oxidoreductase molybdopterin binding YP_004657464.1 PFAM: Oxidoreductase molybdopterin binding domain; COGs: COG0260 Leucyl aminopeptidase; HAMAP: cytosol aminopeptidase; InterPro IPR000819; KEGG: sli:Slin_4525 leucyl aminopeptidase; PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; SPTR: Probable cytosol aminopeptidase YP_004657465.1 PFAM: Cytosol aminopeptidase, catalytic domain; Cytosol aminopeptidase, N-terminal domain; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR003367:IPR006665; KEGG: lby:Lbys_2206 thrombospondin type 3 repeat-containing protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Thrombospondin, type 3-like repeat; SPTR: Thrombospondin type 3 repeat-containing protein YP_004657466.1 PFAM: OmpA family; Thrombospondin type 3 repeat; KEGG: lby:Lbys_2206 thrombospondin type 3 repeat-containing protein; SPTR: Thrombospondin type 3 repeat-containing protein YP_004657467.1 InterPro IPR000537; KEGG: sli:Slin_2533 UbiA prenyltransferase; PFAM: UbiA prenyltransferase; SPTR: UbiA prenyltransferase YP_004657468.1 PFAM: UbiA prenyltransferase YP_004657469.1 PFAM: HNH endonuclease; COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: cao:Celal_2798 transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase YP_004657470.1 PFAM: Transposase; KEGG: dfe:Dfer_4027 hypothetical protein; SPTR: uncharacterized protein YP_004657472.1 PFAM: short chain dehydrogenase YP_004657473.1 COGs: COG0450 Peroxiredoxin; InterPro IPR000866:IPR019479; KEGG: dfe:Dfer_5194 peroxidase; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin, C-terminal; PRIAM: Peroxidase; SPTR: Peroxidase YP_004657474.1 PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family; KEGG: sli:Slin_1291 hypothetical protein; SPTR: uncharacterized protein YP_004657475.1 COGs: COG0524 Sugar kinase ribokinase; InterPro IPR011611; KEGG: sli:Slin_1057 PfkB domain protein; PFAM: Carbohydrate/purine kinase; SPTR: PfkB domain protein YP_004657476.1 PFAM: pfkB family carbohydrate kinase; COGs: COG4886 Leucine-rich repeat (LRR) protein; InterPro IPR001611:IPR003591; KEGG: sli:Slin_1833 leucine-rich repeat-containing protein typical subtype; SPTR: Leucine-rich repeat-containing protein typical subtype YP_004657477.1 PFAM: Leucine Rich Repeat YP_004657478.1 COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: cao:Celal_2798 transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase YP_004657479.1 PFAM: Transposase; InterPro IPR001107; KEGG: cpi:Cpin_5610 hypothetical protein; PFAM: Band 7 protein; SPTR: Band 7 protein YP_004657480.1 PFAM: SPFH domain / Band 7 family; COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR003392; KEGG: dfe:Dfer_0413 conserved hypothetical protein, membrane; PFAM: Patched; SPTR: uncharacterized protein YP_004657481.1 PFAM: MMPL family; KEGG: sli:Slin_0262 Xaa-Pro aminopeptidase; SPTR: Xaa-Pro aminopeptidase enzyme YP_004657482.1 PFAM: Metallopeptidase M24; InterPro IPR000182; KEGG: mxa:MXAN_2839 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase, GNAT family YP_004657483.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: shg:Sph21_2951 xylose isomerase domain-containing protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004657484.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: dfe:Dfer_5762 hypothetical protein; SPTR: uncharacterized protein YP_004657485.1 COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR005913; KEGG: sli:Slin_4815 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; SPTR: dTDP-4-dehydrorhamnose reductase YP_004657486.1 PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase; COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: dfe:Dfer_4684 membrane bound O-acyl transferase MBOAT family protein; PFAM: Membrane bound O-acyl transferase, MBOAT; SPTR: Membrane bound O-acyl transferase MBOAT family protein YP_004657487.1 PFAM: MBOAT family; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_4683 ribonuclease III; PFAM: Glycosyl transferase, family 2; SPTR: Ribonuclease III YP_004657488.1 PFAM: Glycosyl transferase 2; KEGG: dfe:Dfer_4682 hypothetical protein; SPTR: uncharacterized protein YP_004657489.1 KEGG: dfe:Dfer_4681 hypothetical protein; SPTR: uncharacterized protein YP_004657490.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_4680 ribonuclease III; PFAM: Glycosyl transferase, family 2; SPTR: Ribonuclease III YP_004657491.1 PFAM: Glycosyl transferase 2; COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR013747; KEGG: dfe:Dfer_3948 beta-ketoacyl-acyl-carrier-protein synthase I; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase III; SPTR: Beta-ketoacyl-acyl-carrier-protein synthase I YP_004657492.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; KEGG: sli:Slin_0045 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004657493.1 PFAM: transposase, YhgA-like; TIGRFAM: conserved hypothetical protein ( transposase or invertase); COGs: COG4341 HD phosphohydrolase; InterPro IPR006675; KEGG: sli:Slin_3397 metal dependent phosphohydrolase; SPTR: Metal dependent phosphohydrolase; TIGRFAM: HDIG YP_004657494.1 PFAM: HD domain; TIGRFAM: phosphonate degradation operons associated HDIG domain protein; uncharacterized domain HDIG; COGs: COG3391 conserved hypothetical protein; KEGG: sli:Slin_3396 phosphoesterase; SPTR: Phosphoesterase YP_004657495.1 KEGG: sli:Slin_3399 hypothetical protein; SPTR: uncharacterized protein YP_004657497.1 InterPro IPR000200; KEGG: sli:Slin_2129 peptidase C10 streptopain; PFAM: Peptidase C10, streptopain; SPTR: Peptidase C10 streptopain YP_004657498.1 PFAM: Peptidase C10 family; InterPro IPR012910; KEGG: sli:Slin_3400 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug YP_004657499.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR005834; KEGG: sli:Slin_3402 haloacid dehalogenase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Haloacid dehalogenase domain protein hydrolase YP_004657500.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: phosphonatase-like hydrolase; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR017741:IPR006076; KEGG: sli:Slin_3401 FAD dependent oxidoreductase TIGR03364; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase TIGR03364; TIGRFAM: FAD-dependent oxidoreductase, HpnW YP_004657501.1 PFAM: FAD dependent oxidoreductase; TIGRFAM: FAD dependent oxidoreductase TIGR03364; InterPro IPR003140; KEGG: sli:Slin_0089 hypothetical protein; PFAM: Phospholipase/carboxylesterase; SPTR: uncharacterized protein YP_004657502.1 PFAM: Phospholipase/Carboxylesterase; KEGG: sli:Slin_5039 hypothetical protein; SPTR: uncharacterized protein YP_004657504.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: caa:Caka_1487 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: Probable TonB-dependent receptor yncD YP_004657505.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase; InterPro IPR003265; KEGG: sli:Slin_2269 HhH-GPD family protein; PFAM: HhH-GPD domain; SMART: HhH-GPD domain; SPTR: HhH-GPD family protein YP_004657506.1 PFAM: HhH-GPD superfamily base excision DNA repair protein; KEGG: cly:Celly_2677 hypothetical protein; SPTR: uncharacterized protein YP_004657507.1 COGs: COG3757 Lyzozyme M1 (1 4-beta-N-acetylmuramidase); InterPro IPR018077:IPR002053; KEGG: dfe:Dfer_2632 glycoside hydrolase 25; PFAM: Glycoside hydrolase, family 25; SMART: Glycoside hydrolase, family 25 subgroup; SPTR: Glycoside hydrolase 25 YP_004657508.1 PFAM: Glycosyl hydrolases family 25; COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: rbi:RB2501_07005 WD40-like beta propeller protein; PFAM: WD40-like Beta Propeller; SPTR: WD40-like Beta Propeller YP_004657509.1 PFAM: WD40-like Beta Propeller Repeat; COGs: COG3361 conserved hypothetical protein; InterPro IPR018644; KEGG: tsa:AciPR4_3498 hypothetical protein; PFAM: Protein of unknown function DUF2071; SPTR: uncharacterized protein YP_004657510.1 PFAM: Uncharacterized conserved protein (COG2071); COGs: COG3655 transcriptional regulator protein; InterPro IPR001387; KEGG: ckr:CKR_3004 hypothetical protein; SMART: Helix-turn-helix type 3; SPTR: uncharacterized protein YP_004657512.1 COGs: COG0166 Glucose-6-phosphate isomerase; HAMAP: Phosphoglucose isomerase (PGI); InterPro IPR001672; KEGG: dfe:Dfer_1231 glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase (PGI); PRIAM: Glucose-6-phosphate isomerase; SPTR: Glucose-6-phosphate isomerase YP_004657513.1 PFAM: Phosphoglucose isomerase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: sli:Slin_2407 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004657514.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR000182; KEGG: dfe:Dfer_1254 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase YP_004657515.1 KEGG: sli:Slin_2406 acyltransferase 3; SPTR: Acyltransferase 3 YP_004657516.1 PFAM: Acyltransferase; KEGG: mtt:Ftrac_0427 hypothetical protein; SPTR: uncharacterized protein YP_004657517.1 COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; InterPro IPR006148; KEGG: dfe:Dfer_2815 glucosamine-6-phosphate deaminase; PFAM: Glucosamine/galactosamine-6-phosphate isomerase; PRIAM: Glucosamine-6-phosphate deaminase; SPTR: Glucosamine-6-phosphate deaminase YP_004657518.1 PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; TIGRFAM: glucosamine-6-phosphate isomerase; InterPro IPR008671; KEGG: sli:Slin_0447 lycopene beta and epsilon cyclase; PFAM: Lycopene beta/epsilon cyclase; SPTR: Lycopene beta and epsilon cyclase YP_004657519.1 PFAM: Lycopene cyclase; Prodigal; manually curated YP_004657522.1 Prodigal; manually curated YP_004657527.1 KEGG: shg:Sph21_4440 hypothetical protein; SPTR: uncharacterized protein YP_004657528.1 PFAM: CAAX amino terminal protease; Prodigal; manually curated YP_004657529.1 PFAM: Plasmid encoded toxin Txe; TIGRFAM: toxin-antitoxin system, toxin component, Txe/YoeB family; KEGG: cyh:Cyan8802_3568 hypothetical protein; SPTR: uncharacterized protein YP_004657530.1 Prodigal; manually curated YP_004657531.1 PFAM: Radical SAM superfamily; TIGRFAM: lipoate synthase; KEGG: dfe:Dfer_3201 hypothetical protein; SPTR: uncharacterized protein YP_004657532.1 COGs: COG1765 redox protein regulator of disulfide bond formation; InterPro IPR003718; KEGG: sli:Slin_0444 OsmC family protein; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: OsmC family protein YP_004657533.1 PFAM: OsmC-like protein; InterPro IPR010846; KEGG: lby:Lbys_1701 hypothetical protein; PFAM: Protein of unknown function DUF1460; SPTR: uncharacterized protein YP_004657534.1 PFAM: Protein of unknown function (DUF1460); COGs: COG1864 DNA/RNA endonuclease G NUC1; InterPro IPR020821:IPR001604; KEGG: sli:Slin_0792 DNA/RNA non-specific endonuclease; PFAM: DNA/RNA non-specific endonuclease; SMART: Extracellular Endonuclease, subunit A; SPTR: DNA/RNA non-specific endonuclease YP_004657535.1 PFAM: DNA/RNA non-specific endonuclease; COGs: COG2081 flavoprotein; InterPro IPR004792; KEGG: sli:Slin_0791 HI0933 family protein; PFAM: HI0933-like protein; SPTR: HI0933 family protein; TIGRFAM: HI0933-like protein YP_004657536.1 PFAM: HI0933-like protein; TIGRFAM: flavoprotein, HI0933 family; COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: dfe:Dfer_2940 NLP/P60 protein; PFAM: NLP/P60; SPTR: NLP/P60 protein YP_004657537.1 PFAM: NlpC/P60 family; InterPro IPR000182; KEGG: sli:Slin_1326 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase YP_004657538.1 PFAM: Acetyltransferase (GNAT) family YP_004657539.1 KEGG: sli:Slin_5131 hypothetical protein; SPTR: uncharacterized protein YP_004657540.1 COGs: COG1331 Highly conserved protein containing a thioredoxin domain; InterPro IPR004879; KEGG: dfe:Dfer_0027 protein of unknown function DUF255; SPTR: uncharacterized protein YP_004657541.1 PFAM: Protein of unknown function, DUF255; COGs: COG1738 conserved hypothetical protein; InterPro IPR003744; KEGG: dfe:Dfer_2724 hypothetical protein; PFAM: Protein of unknown function DUF165; SPTR: uncharacterized protein; TIGRFAM: Protein of unknown function DUF165 YP_004657542.1 PFAM: Uncharacterized ACR, YhhQ family COG1738; TIGRFAM: conserved hypothetical integral membrane protein; COGs: COG3129 SAM-dependent methyltransferase; HAMAP: Ribosomal RNA large subunit methyltransferase F; InterPro IPR010286:IPR016909; KEGG: ppr:PBPRB0892 SAM-dependent methyltransferase; PFAM: S-adenosyl-L-methionine dependent methyltransferase, predicted; PRIAM: rRNA (adenine-N(6)-)-methyltransferase; SPTR: Ribosomal RNA large subunit methyltransferase F YP_004657543.1 PFAM: Protein of unknown function (DUF890) YP_004657544.1 InterPro IPR006626:IPR011459; KEGG: sli:Slin_1130 PDZ/DHR/GLGF domain protein; PFAM: Protein of unknown function DUF1565; SPTR: PDZ/DHR/GLGF domain protein YP_004657545.1 COGs: COG1115 Na+/alanine symporter; InterPro IPR001463; KEGG: shg:Sph21_0204 amino acid carrier protein; PFAM: Sodium:alanine symporter; SPTR: Amino acid carrier protein; TIGRFAM: Sodium:alanine symporter YP_004657546.1 PFAM: Sodium:alanine symporter family; TIGRFAM: amino acid carrier protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: dfe:Dfer_2873 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004657547.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR006311:IPR012307; KEGG: dfe:Dfer_2872 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004657548.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001:IPR001650:IPR011545:IPR005580; KEGG: sli:Slin_3331 DEAD/DEAH box helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein YP_004657549.1 PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase; COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: dfe:Dfer_3737 AAA ATPase; SMART: ATPase, AAA+ type, core; SPTR: AAA ATPase YP_004657550.1 PFAM: ATPase associated with various cellular activities (AAA); KEGG: sli:Slin_3516 hypothetical protein; SPTR: uncharacterized protein YP_004657551.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_1279 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004657552.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: dfe:Dfer_1280 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS YP_004657553.1 PFAM: Histidine kinase; 7TM diverse intracellular signalling; InterPro IPR006311:IPR013096; KEGG: sli:Slin_3501 cupin; PFAM: Cupin 2, conserved barrel; SPTR: Cupin 2 conserved barrel domain protein YP_004657554.1 PFAM: Cupin domain; Prodigal; manually curated YP_004657555.1 Prodigal; manually curated YP_004657556.1 PFAM: TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-linked outer membrane protein, SusC/RagA family; KEGG: sli:Slin_4223 hypothetical protein; SPTR: uncharacterized protein YP_004657557.1 PFAM: SusD family; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: dfe:Dfer_4164 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein YP_004657558.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_4163 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD YP_004657559.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_4162 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein YP_004657560.1 PFAM: Outer membrane efflux protein; InterPro IPR000835; KEGG: dfe:Dfer_4161 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family YP_004657561.1 PFAM: MarR family; InterPro IPR008538; KEGG: dfe:Dfer_4621 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein YP_004657562.1 PFAM: Protein of unknown function (DUF820); COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: sli:Slin_0993 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: tRNA/rRNA methyltransferase (SpoU) YP_004657563.1 PFAM: SpoU rRNA Methylase; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: sli:Slin_0992 surface antigen (D15); PFAM: Bacterial surface antigen (D15); SPTR: Surface antigen (D15) YP_004657564.1 PFAM: Surface antigen; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: cpi:Cpin_2831 outer membrane protein; PFAM: Outer membrane efflux protein; SPTR: outer membrane protein YP_004657565.1 PFAM: Outer membrane efflux protein; COGs: COG1566 Multidrug resistance efflux pump; KEGG: sli:Slin_3996 secretion protein HlyD; SPTR: Secretion protein HlyD YP_004657566.1 COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR003439; KEGG: rbi:RB2501_08265 HlyB/MsbA family ABC transporter; PFAM: ABC transporter-like; PRIAM: Xenobiotic-transporting ATPase; SPTR: HlyB/MsbA family ABC transporter YP_004657567.1 PFAM: ABC transporter; KEGG: sli:Slin_1651 hypothetical protein; SPTR: uncharacterized protein YP_004657568.1 InterPro IPR000209; KEGG: sli:Slin_1650 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Peptidase S8 and S53 subtilisin kexin sedolisin YP_004657569.1 PFAM: Subtilase; COGs: COG2761 dithiol-disulfide isomerase involved in polyketide biosynthesis; InterPro IPR001853; KEGG: rpd:RPD_1717 DsbA oxidoreductase; PFAM: DSBA oxidoreductase; SPTR: DSBA oxidoreductase YP_004657570.1 PFAM: DSBA-like thioredoxin domain; COGs: COG0228 Ribosomal protein S16; HAMAP: Ribosomal protein S16; InterPro IPR000307; KEGG: dfe:Dfer_2582 30S ribosomal protein S16; PFAM: Ribosomal protein S16; SPTR: 30S ribosomal protein S16; TIGRFAM: Ribosomal protein S16 YP_004657571.1 PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; COGs: COG0806 RimM protein required for 16S rRNA processing; HAMAP: 16S rRNA processing protein RimM; InterPro IPR011961:IPR002676:IPR007903; KEGG: sli:Slin_1385 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel; SPTR: Ribosome maturation factor rimM; TIGRFAM: 16S rRNA processing protein RimM YP_004657572.1 PFAM: PRC-barrel domain; RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM; COGs: COG0336 tRNA-(guanine-N1)-methyltransferase; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; InterPro IPR002649:IPR016009; KEGG: sli:Slin_1386 tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; PRIAM: tRNA (guanine-N(1)-)-methyltransferase; SPTR: tRNA (guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria YP_004657573.1 PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; COGs: COG0063 sugar kinase; InterPro IPR004443:IPR000631; KEGG: sli:Slin_1453 carbohydrate kinase, YjeF related protein; PFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; SPTR: Carbohydrate kinase, YjeF related protein; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal YP_004657574.1 PFAM: YjeF-related protein N-terminus; Carbohydrate kinase; TIGRFAM: yjeF C-terminal region, hydroxyethylthiazole kinase-related; yjeF N-terminal region; COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869; KEGG: rbi:RB2501_13474 capsular polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein CapD-like; SPTR: Polysaccharide biosynthesis protein YP_004657575.1 PFAM: Polysaccharide biosynthesis protein; COGs: COG1090 nucleoside-diphosphate sugar epimerase; InterPro IPR010099:IPR001509:IPR013549; KEGG: dfe:Dfer_4158 domain of unknown function DUF1731; PFAM: Domain of unknown function DUF1731, C-terminal; NAD-dependent epimerase/dehydratase; SPTR: uncharacterized protein YP_004657576.1 PFAM: NAD dependent epimerase/dehydratase; Domain of unknown function (DUF1731); TIGRFAM: TIGR01777 family protein YP_004657577.1 COGs: COG0556 Helicase subunit of the DNA excision repair complex; HAMAP: Excinuclease ABC, B subunit; InterProIPR004807:IPR014001:IPR001650:IPR006935:IPR 001943; KEGG: sli:Slin_3612 excinuclease ABC subunit B; PFAM: DNA/RNA helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: UvrABC system protein B; TIGRFAM: Excinuclease ABC, B subunit YP_004657578.1 PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit; COGs: COG0824 thioesterase; InterPro IPR006683; KEGG: cph:Cpha266_1929 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily YP_004657579.1 PFAM: Acyl-ACP thioesterase; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family; InterPro IPR007712; KEGG: pcu:pc0990 hypothetical protein; PFAM: Plasmid stabilisation system; SPTR: Addiction module toxin, RelE/StbE family YP_004657580.1 PFAM: Plasmid stabilisation system protein YP_004657581.1 COGs: COG1186 Protein chain release factor B; InterPro IPR000352; KEGG: dfe:Dfer_4614 class I peptide chain release factor; PFAM: Class I peptide chain release factor; SPTR: Class I peptide chain release factor YP_004657582.1 PFAM: RF-1 domain; InterPro IPR000182; KEGG: sli:Slin_1787 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase YP_004657583.1 PFAM: Acetyltransferase (GNAT) family YP_004657585.1 COGs: COG0157 Nicotinate-nucleotide pyrophosphorylase; InterPro IPR004393:IPR002638; KEGG: sli:Slin_5167 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; PRIAM: Nicotinate-nucleotide diphosphorylase (carboxylating); SPTR: Nicotinate-nucleotide pyrophosphorylase; TIGRFAM: Nicotinate-nucleotide pyrophosphorylase YP_004657586.1 PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; KEGG: sli:Slin_0397 hypothetical protein; SPTR: uncharacterized protein YP_004657588.1 KEGG: dfe:Dfer_2961 hypothetical protein; SPTR: uncharacterized protein YP_004657590.1 COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594:IPR011712; KEGG: sli:Slin_5844 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; SMART: ATP-binding region, ATPase-like; SPTR: Histidine kinase YP_004657591.1 PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: sli:Slin_5845 LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SPTR: Two component transcriptional regulator, LuxR family YP_004657592.1 PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: dfe:Dfer_0898 linoleoyl-CoA desaturase; PFAM: Fatty acid desaturase, type 1; PRIAM: Linoleoyl-CoA desaturase; SPTR: Linoleoyl-CoA desaturase YP_004657593.1 PFAM: Fatty acid desaturase; KEGG: sli:Slin_2263 hypothetical protein; SPTR: uncharacterized protein YP_004657594.1 COGs: COG0787 Alanine racemase; HAMAP: Alanine racemase; InterPro IPR000821:IPR013221:IPR001608:IPR011079; KEGG: dfe:Dfer_4988 bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; PFAM: Alanine racemase, N-terminal; Mur ligase, central; Alanine racemase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase., Alanine racemase; SPTR: Alanine racemase; TIGRFAM: Alanine racemase YP_004657595.1 PFAM: Alanine racemase, C-terminal domain; Alanine racemase, N-terminal domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; alanine racemase; InterPro IPR004360; KEGG: cpi:Cpin_1769 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004657596.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; KEGG: ppn:Palpr_0253 lipoprotein; SPTR: lipoprotein YP_004657597.1 Prodigal; manually curated YP_004657598.1 PFAM: TonB-dependent Receptor Plug Domain YP_004657599.1 Prodigal; manually curated YP_004657600.1 COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance; InterPro IPR005496; KEGG: sli:Slin_6503 integral membrane protein TerC; PFAM: Integral membrane protein TerC; SPTR: Integral membrane protein TerC YP_004657601.1 PFAM: Integral membrane protein TerC family; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: cpi:Cpin_0778 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Kynurenine--oxoglutarate transaminase; SPTR: Aminotransferase class I and II YP_004657602.1 PFAM: Aminotransferase class I and II; COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: dfe:Dfer_4179 NLP/P60 protein; PFAM: NLP/P60; SPTR: NLP/P60 protein YP_004657603.1 PFAM: NlpC/P60 family; InterPro IPR001845; KEGG: sli:Slin_3936 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family YP_004657604.1 PFAM: Bacterial regulatory protein, arsR family; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216:IPR000182; KEGG: sli:Slin_3937 methyltransferase type 11; PFAM: Methyltransferase type 11; GCN5-related N-acetyltransferase; SPTR: Methyltransferase type 11 YP_004657605.1 PFAM: Methyltransferase domain; Acetyltransferase (GNAT) family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: sli:Slin_4971 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004657606.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR008775; KEGG: sli:Slin_4972 phytanoyl-CoA dioxygenase; PFAM: Phytanoyl-CoA dioxygenase; SPTR: Phytanoyl-CoA dioxygenase YP_004657607.1 PFAM: Phytanoyl-CoA dioxygenase (PhyH); COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: sli:Slin_5516 phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; SPTR: Competence protein YP_004657608.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein; COGs: COG1262 conserved hypothetical protein; InterPro IPR019868:IPR005532; KEGG: sli:Slin_5515 gliding motility-associated lipoprotein GldJ; PFAM: Sulphatase-modifying factor; SPTR: Gliding motility-associated lipoprotein GldJ; TIGRFAM: Gliding motility-associated lipoprotein GldJ-short YP_004657609.1 PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: gliding motility-associated lipoprotein GldJ; COGs: COG0817 Holliday junction resolvasome endonuclease subunit; HAMAP: Crossover junction endodeoxyribonuclease RuvC; InterPro IPR002176; KEGG: dfe:Dfer_2024 crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; PRIAM: Crossover junction endodeoxyribonuclease; SPTR: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: Crossover junction endodeoxyribonuclease RuvC YP_004657610.1 PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; KEGG: dfe:Dfer_2025 hypothetical protein; SPTR: uncharacterized protein YP_004657611.1 PFAM: Uncharacterised protein family (UPF0104); COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_2238 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004657612.1 PFAM: Glycosyl transferase 2; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: sli:Slin_2237 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase YP_004657613.1 PFAM: Polysaccharide deacetylase; KEGG: acl:ACL_0165 integral membrane protein; SPTR: Integral membrane protein YP_004657614.1 PFAM: Protein of unknown function (DUF3267); COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076; KEGG: sli:Slin_4949 glucose-methanol-choline oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase YP_004657615.1 PFAM: GMC oxidoreductase; COGs: COG0714 MoxR-like ATPase; InterPro IPR003593:IPR011704; KEGG: pfo:Pfl01_1409 ATPase; PFAM: ATPase associated with various cellular activities, AAA-5; SMART: ATPase, AAA+ type, core; SPTR: ATPase, AAA family YP_004657616.1 PFAM: ATPase associated with various cellular activities (AAA); COGs: COG3825 conserved hypothetical protein; KEGG: reh:H16_A1116 von Willebrand factor type A domain-containing protein; SPTR: uncharacterized protein YP_004657617.1 PFAM: VWA domain containing CoxE-like protein; COGs: COG1385 conserved hypothetical protein; InterPro IPR006700; KEGG: sli:Slin_1352 hypothetical protein; PFAM: Ribosomal RNA small subunit methyltransferase E; SPTR: uncharacterized protein; TIGRFAM: Ribosomal RNA small subunit methyltransferase E YP_004657618.1 PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: dfe:Dfer_1502 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; SPTR: Response regulator YP_004657619.1 PFAM: LytTr DNA-binding domain; KEGG: sli:Slin_1353 hypothetical protein; SPTR: uncharacterized protein YP_004657620.1 COGs: COG1398 Fatty-acid desaturase; InterPro IPR005804; KEGG: sli:Slin_1354 fatty acid desaturase; PFAM: Fatty acid desaturase, type 1; SPTR: Fatty acid desaturase YP_004657621.1 PFAM: Fatty acid desaturase; COGs: COG4502 conserved hypothetical protein; InterPro IPR010708; KEGG: dfe:Dfer_0454 5 nucleotidase deoxy cytosolic type C; SPTR: 5 nucleotidase deoxy cytosolic type C YP_004657622.1 PFAM: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); KEGG: sli:Slin_3865 hypothetical protein; SPTR: uncharacterized protein YP_004657623.1 COGs: COG0045 Succinyl-CoA synthetase beta subunit; HAMAP: Succinyl-CoA ligase [ADP-forming] subunit beta; InterPro IPR005809:IPR013650:IPR005811; KEGG: dfe:Dfer_2736 succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; PRIAM: Succinate--CoA ligase (ADP-forming); SPTR: Succinyl-CoA ligase [ADP-forming] subunit beta; TIGRFAM: Succinyl-CoA synthetase, beta subunit YP_004657624.1 PFAM: CoA-ligase; ATP-grasp domain; TIGRFAM: succinyl-CoA synthetase, beta subunit; COGs: COG4330 membrane protein; InterPro IPR009793; KEGG: dfe:Dfer_0075 protein of unknown function DUF1361; PFAM: Protein of unknown function DUF1361; SPTR: uncharacterized protein YP_004657625.1 PFAM: Protein of unknown function (DUF1361); COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011663; KEGG: bpo:BP951000_1878 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated; SMART: HTH transcriptional regulator, GntR; SPTR: UTRA domain-containing protein YP_004657626.1 PFAM: Bacterial regulatory proteins, gntR family; UTRA domain; COGs: COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); HAMAP: NAD(P)H-quinone oxidoreductase subunit 4L; InterPro IPR001133; KEGG: sli:Slin_4911 NADH-ubiquinone oxidoreductase chain 4L; PFAM: NADH:ubiquinone/quinone oxidoreductase, chain 4L; SPTR: NADH-quinone oxidoreductase subunit K 1 YP_004657627.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; KEGG: sli:Slin_3137 hypothetical protein; SPTR: uncharacterized protein YP_004657629.1 KEGG: dfe:Dfer_0219 hypothetical protein; SPTR: uncharacterized protein YP_004657630.1 PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX); KEGG: sli:Slin_2311 hypothetical protein; SPTR: uncharacterized protein YP_004657631.1 COGs: COG0442 Prolyl-tRNA synthetase; HAMAP: Prolyl-tRNA synthetase, class IIa, prokaryotic-type; InterPro IPR004499:IPR002314:IPR004154:IPR016061; KEGG: dfe:Dfer_0217 prolyl-tRNA synthetase; PFAM: Prolyl-tRNA synthetase, class II, C-terminal; Anticodon-binding; Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; PRIAM: Proline--tRNA ligase; SPTR: Prolyl-tRNA synthetase; TIGRFAM: Prolyl-tRNA synthetase, class IIa, prokaryotic-type YP_004657632.1 PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); Prolyl-tRNA synthetase, C-terminal; TIGRFAM: prolyl-tRNA synthetase, family I; COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: sli:Slin_2307 peptidylprolyl isomerase FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase YP_004657633.1 PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; COGs: COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); HAMAP: NAD(P)H-quinone oxidoreductase subunit 3; InterPro IPR000440; KEGG: dfe:Dfer_2467 NADH-ubiquinone/plastoquinone oxidoreductase chain 3; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3; SPTR: NADH-quinone oxidoreductase subunit YP_004657634.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; COGs: COG3968 Uncharacterized protein related to glutamine synthetase; InterPro IPR008146; KEGG: sli:Slin_2431 glutamine synthetase; PFAM: Glutamine synthetase, catalytic region; SPTR: Glutamine synthetase catalytic region YP_004657635.1 PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase type III N terminal; manually curated YP_004657636.1 PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme; radical SAM methylthiotransferase, MiaB/RimO family; KEGG: mtt:Ftrac_1186 hypothetical protein; SPTR: uncharacterized protein YP_004657637.1 KEGG: dfe:Dfer_5063 NUMOD4 domain-containing protein; SPTR: NUMOD4 domain-containing protein YP_004657638.1 PFAM: NUMOD4 motif; COGs: COG2896 Molybdenum cofactor biosynthesis protein; InterPro IPR013483:IPR006638:IPR007197:IPR010505; KEGG: sli:Slin_4668 molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM; Molybdenum cofactor synthesis C-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: Molybdenum cofactor biosynthesis protein A; TIGRFAM: Molybdenum cofactor biosynthesis protein A YP_004657639.1 PFAM: Molybdenum Cofactor Synthesis C; Radical SAM superfamily; TIGRFAM: molybdenum cofactor biosynthesis protein A, bacterial; COGs: COG1278 Cold shock protein; InterPro IPR011129:IPR002059; KEGG: ppn:Palpr_1708 cold-shock DNA-binding protein family; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding domain protein YP_004657640.1 PFAM: 'Cold-shock' DNA-binding domain; SPTR: Transposase IS4 family protein YP_004657641.1 COGs: COG0173 Aspartyl-tRNA synthetase; InterPro IPR004524:IPR004365:IPR004364:IPR004115; KEGG: sli:Slin_4178 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain; PRIAM: Aspartate--tRNA ligase; SPTR: Aspartyl-tRNA synthetase; TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type YP_004657642.1 PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type YP_004657643.1 KEGG: dfe:Dfer_3246 hypothetical protein; SPTR: uncharacterized protein YP_004657644.1 KEGG: dfe:Dfer_3247 hypothetical protein; SPTR: uncharacterized protein YP_004657645.1 KEGG: dfe:Dfer_4748 hypothetical protein; SPTR: uncharacterized protein YP_004657646.1 InterPro IPR012910; KEGG: dfe:Dfer_4749 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug YP_004657647.1 PFAM: TonB-dependent Receptor Plug Domain YP_004657649.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: psn:Pedsa_0209 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family YP_004657650.1 PFAM: Cyclic nucleotide-binding domain; InterPro IPR000792; PFAM: Transcription regulator LuxR, C-terminal YP_004657651.1 PFAM: Bacterial regulatory proteins, luxR family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_1571 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor YP_004657652.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_004657653.1 COGs: COG0622 phosphoesterase; InterPro IPR000979:IPR004843; KEGG: dfe:Dfer_2380 phosphodiesterase, MJ0936 family; PFAM: Metallophosphoesterase; SPTR: Phosphodiesterase, MJ0936 family; TIGRFAM: Uncharacterised protein family UPF0025 YP_004657654.1 PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family; COGs: COG1914 Mn2+ and Fe2+ transporter of the NRAMP family; KEGG: dfe:Dfer_4281 transmembrane transport protein; SPTR: transmembrane transport protein YP_004657655.1 PFAM: Natural resistance-associated macrophage protein; InterPro IPR008815; KEGG: psl:Psta_2484 S23 ribosomal protein; PFAM: 23S rRNA-associated protein; SPTR: S23 ribosomal protein YP_004657656.1 PFAM: S23 ribosomal protein; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: sli:Slin_2999 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: o-succinylbenzoate--CoA ligase; SPTR: AMP-dependent synthetase and ligase YP_004657657.1 PFAM: AMP-binding enzyme; KEGG: dfe:Dfer_2586 hypothetical protein; SPTR: uncharacterized protein YP_004657658.1 KEGG: sli:Slin_1374 hypothetical protein; SPTR: uncharacterized protein YP_004657659.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR011284:IPR002198; KEGG: sli:Slin_1373 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: 3-oxoacyl-(Acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase YP_004657660.1 PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; KEGG: cts:Ctha_1277 hypothetical protein; SPTR: uncharacterized protein YP_004657661.1 COGs: COG4637 ATPase; InterPro IPR003395; KEGG: cts:Ctha_1278 SMC domain-containing protein; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: SMC domain protein YP_004657662.1 PFAM: RecF/RecN/SMC N terminal domain; COGs: COG0279 Phosphoheptose isomerase; HAMAP: Phosphoheptose isomerase; InterPro IPR020620; KEGG: cpi:Cpin_3114 phosphoheptose isomerase; SPTR: Phosphoheptose isomerase YP_004657663.1 TIGRFAM: phosphoheptose isomerase; COGs: COG3281 Uncharacterized protein probably involved in trehalose biosynthesis; KEGG: sli:Slin_0399 trehalose synthase-fused maltokinase-like protein; SPTR: Trehalose synthase-fused maltokinase-like protein YP_004657664.1 TIGRFAM: trehalose synthase-fused probable maltokinase; COGs: COG2936 acyl esterase; InterPro IPR005674:IPR000383:IPR013736; KEGG: shg:Sph21_2808 hydrolase CocE/NonD family protein; SPTR: Hydrolase CocE/NonD family protein; TIGRFAM: CocE/NonD hydrolase YP_004657665.1 PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: hydrolase, CocE/NonD family; COGs: COG1217 membrane GTPase involved in stress response; InterProIPR005225:IPR006298:IPR000795:IPR004161:IPR 000640; KEGG: dfe:Dfer_3399 GTP-binding protein TypA; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; SPTR: GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein YP_004657666.1 PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain YP_004657669.1 COGs: COG0135 Phosphoribosylanthranilate isomerase; InterPro IPR001240; KEGG: sli:Slin_0371 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); SPTR: N-(5'-phosphoribosyl)anthranilate isomerase YP_004657670.1 PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: dfe:Dfer_2381 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28 YP_004657671.1 PFAM: Peptidase M28; COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: phe:Phep_0042 mechanosensitive ion channel MscS; PFAM: Mechanosensitive ion channel MscS; SPTR: MscS Mechanosensitive ion channel YP_004657672.1 PFAM: Mechanosensitive ion channel; COGs: COG1521 transcriptional regulator protein; HAMAP: Type III pantothenate kinase; InterPro IPR004619; KEGG: dfe:Dfer_5203 pantothenate kinase; PFAM: Bordetella pertussis Bvg accessory factor; SPTR: Type III pantothenate kinase 2; TIGRFAM: Bordetella pertussis Bvg accessory factor YP_004657673.1 PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III; InterPro IPR005017; KEGG: sli:Slin_1298 hypothetical protein; PFAM: Membrane protein, aromatic hydrocarbon degradation; SPTR: uncharacterized protein YP_004657674.1 PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro IPR010664; KEGG: sli:Slin_1299 hypothetical protein; PFAM: Protein of unknown function DUF1239; SPTR: uncharacterized protein YP_004657675.1 PFAM: Protein of unknown function (DUF1239); COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR014327:IPR007627:IPR013249; KEGG: dfe:Dfer_0642 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70 YP_004657676.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: dfe:Dfer_0641 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR YP_004657677.1 PFAM: FecR protein; InterPro IPR012910:IPR000531; KEGG: phe:Phep_2893 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004657678.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: phe:Phep_2892 RagB/SusD domain-containing protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein YP_004657679.1 PFAM: SusD family; InterPro IPR010496; KEGG: bth:BT_3469 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein YP_004657680.1 PFAM: Domain of Unknown Function (DUF1080); InterPro IPR012910; KEGG: sli:Slin_2829 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug YP_004657681.1 PFAM: TonB-dependent Receptor Plug Domain; KEGG: rbi:RB2501_03795 hypothetical protein; SPTR: uncharacterized protein YP_004657682.1 KEGG: rbi:RB2501_03795 hypothetical protein; SPTR: uncharacterized protein YP_004657683.1 KEGG: sli:Slin_5007 hypothetical protein; SPTR: uncharacterized protein YP_004657684.1 KEGG: sli:Slin_4998 cytochrome c class I; SPTR: Cytochrome c class I YP_004657685.1 PFAM: Cytochrome c; KEGG: sli:Slin_5004 hypothetical protein; SPTR: uncharacterized protein YP_004657686.1 PFAM: Cytochrome c; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sli:Slin_5003 sulfatase; PFAM: Sulfatase; PRIAM: Arylsulfatase; SPTR: Sulfatase YP_004657687.1 PFAM: Sulfatase; InterPro IPR013222:IPR019599:IPR008009:IPR000111; KEGG: phe:Phep_2887 alpha-galactosidase; PFAM: Glycosyl hydrolase 98, carbohydrate-binding module; Alpha-galactosidase, NEW1 domain; Ig; Glycoside hydrolase, clan GH-D; PRIAM: Alpha-galactosidase; SMART: Glycosyl hydrolase 98, carbohydrate-binding module; SPTR: Alpha-galactosidase YP_004657688.1 PFAM: NPCBM/NEW2 domain; Melibiase; He_PIG associated, NEW1 domain of bacterial glycohydrolase; Ig domain; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR003593:IPR005074:IPR001140:IPR003439; KEGG: shg:Sph21_0591 xenobiotic-transporting ATPase; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Bacteriocin ABC transporter, ATP-binding/permease YP_004657689.1 PFAM: ABC transporter; Peptidase C39 family; ABC transporter transmembrane region; InterPro IPR000866; KEGG: dfe:Dfer_1269 hypothetical protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein YP_004657690.1 PFAM: AhpC/TSA family; KEGG: shg:Sph21_0589 hypothetical protein; SPTR: uncharacterized protein YP_004657695.1 KEGG: psn:Pedsa_0209 transcriptional regulator, Crp/Fnr family; SPTR: Cyclic nucleotide binding regulatory protein YP_004657696.1 SPTR: uncharacterized protein YP_004657697.1 InterPro IPR013148; KEGG: shg:Sph21_5081 glycosyl hydrolase 32 domain protein; PFAM: Glycosyl hydrolases family 32, N-terminal; SPTR: uncharacterized protein YP_004657698.1 PFAM: Glycosyl hydrolases family 32 N-terminal domain; Glycosyl hydrolases family 43; InterPro IPR013428:IPR003088; KEGG: sli:Slin_5000 dehydrogenase; PFAM: Cytochrome c, class I; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase YP_004657699.1 PFAM: Cytochrome c; KEGG: ote:Oter_4283 alpha/beta hydrolase domain-containing protein; PRIAM: Alpha-L-fucosidase; SPTR: Alpha/beta hydrolase fold-3 domain protein YP_004657700.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469:IPR001375; KEGG: pdi:BDI_2246 dipeptidyl aminopeptidase; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; Peptidase S9, prolyl oligopeptidase, catalytic domain; PRIAM: Dipeptidyl-peptidase IV; SPTR: Dipeptidyl aminopeptidase YP_004657701.1 PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region; KEGG: scb:SCAB_0601 hypothetical protein; SPTR: uncharacterized protein YP_004657703.1 InterPro IPR011462; KEGG: psn:Pedsa_0083 hypothetical protein; SPTR: uncharacterized protein YP_004657704.1 PFAM: Transposase IS200 like; Prodigal; manually curated YP_004657705.1 PFAM: Sulfite exporter TauE/SafE; COGs: COG1760 L-serine deaminase; InterPro IPR005131:IPR005130; KEGG: rba:RB8979 L-serine dehydratase, alpha chain; PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain; SPTR: Probable L-serine dehydratase, alpha chain YP_004657706.1 PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit; L-serine dehydratase, iron-sulfur-dependent, alpha subunit; KEGG: pno:SNOG_14897 hypothetical protein; SPTR: uncharacterized protein YP_004657707.1 KEGG: sli:Slin_4999 hypothetical protein; SPTR: uncharacterized protein YP_004657708.1 PFAM: Alkaline phytoceramidase (aPHC); InterPro IPR002860; KEGG: sli:Slin_1563 glycosyl hydrolase, BNR repeat-containing protein; PFAM: BNR repeat; SPTR: Glycosyl hydrolase, BNR repeat-containing protein YP_004657709.1 PFAM: BNR/Asp-box repeat; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sli:Slin_4996 sulfatase; PFAM: Sulfatase; SPTR: Sulfatase YP_004657710.1 PFAM: Sulfatase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: sli:Slin_4997 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004657711.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; InterPro IPR003088; KEGG: sli:Slin_1300 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I YP_004657712.1 PFAM: Cytochrome c; COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; InterPro IPR003782; KEGG: dfe:Dfer_5207 electron transport protein SCO1/SenC; PFAM: Copper chaperone SCO1/SenC; SPTR: Electron transport protein SCO1/SenC YP_004657713.1 PFAM: SCO1/SenC; KEGG: dfe:Dfer_5208 viral A-type inclusion protein; SPTR: Viral A-type inclusion protein YP_004657714.1 COGs: COG0497 ATPase involved in DNA repair; InterPro IPR004604:IPR003395; KEGG: sli:Slin_1303 DNA repair protein RecN; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN YP_004657715.1 PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN YP_004657716.1 KEGG: sli:Slin_1304 hypothetical protein; SPTR: uncharacterized protein YP_004657717.1 COGs: COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; InterPro IPR005252:IPR003382:IPR007085; KEGG: sli:Slin_1305 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: Flavoprotein; DNA/pantothenate metabolism flavoprotein, C-terminal; PRIAM: Phosphopantothenate--cysteine ligase; SPTR: Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_004657718.1 PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic; KEGG: sli:Slin_1306 hypothetical protein; SPTR: uncharacterized protein YP_004657719.1 COGs: COG4105 DNA uptake lipoprotein; InterPro IPR017689; KEGG: dfe:Dfer_5214 outer membrane assembly lipoprotein YfiO; SPTR: Outer membrane assembly lipoprotein YfiO; TIGRFAM: Outer membrane assembly lipoprotein YfiO YP_004657720.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: sli:Slin_1308 hypothetical protein; SPTR: uncharacterized protein YP_004657721.1 KEGG: sli:Slin_1309 hypothetical protein; SPTR: uncharacterized protein YP_004657722.1 COGs: COG0657 Esterase/lipase; InterPro IPR001375; KEGG: sli:Slin_1531 esterase/lipase-like protein; SPTR: Esterase/lipase-like protein YP_004657723.1 PFAM: alpha/beta hydrolase fold; COGs: COG2272 Carboxylesterase type B; InterPro IPR002018; KEGG: rbi:RB2501_01206 esterase; PFAM: Carboxylesterase, type B; PRIAM: Carboxylesterase; SPTR: esterase YP_004657724.1 PFAM: Carboxylesterase; InterPro IPR006311; KEGG: dfe:Dfer_3262 hypothetical protein; SPTR: uncharacterized protein YP_004657725.1 TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; KEGG: cph:Cpha266_0450 hypothetical protein; SPTR: uncharacterized protein YP_004657726.1 PFAM: Oxidoreductase molybdopterin binding domain; COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550:IPR000644:IPR005170; KEGG: fps:FP1358 hypothetical protein; PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated region; SPTR: uncharacterized protein YP_004657727.1 PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain YP_004657728.1 KEGG: shg:Sph21_2865 alpha-L-fucosidase; PRIAM: Alpha-L-fucosidase; SPTR: Alpha-L-fucosidase YP_004657729.1 COGs: COG1501 Alpha-glucosidase 31 of glycosyl hydrolase; InterPro IPR000322; KEGG: phe:Phep_2697 glycoside hydrolase 31; PFAM: Glycoside hydrolase, family 31; PRIAM: Alpha-glucosidase; SPTR: Glycoside hydrolase 31 YP_004657730.1 PFAM: Glycosyl hydrolases family 31; KEGG: sli:Slin_4611 hypothetical protein; SPTR: uncharacterized protein YP_004657731.1 PFAM: Domain of unknown function (DUF1083); COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR011659:IPR001375; KEGG: sli:Slin_6131 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein YP_004657732.1 PFAM: Prolyl oligopeptidase; WD40-like Beta Propeller Repeat YP_004657733.1 COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; InterPro IPR011810:IPR003135:IPR013221:IPR004101; KEGG: llo:LLO_2537 cyanophycin synthetase; PFAM: Mur ligase, central; ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; Mur ligase, C-terminal; PRIAM: Cyanophycin synthase (L-aspartate-adding); SPTR: Cyanophycin synthetase; TIGRFAM: Cyanophycin synthetase YP_004657734.1 PFAM: RimK-like ATP-grasp domain; Mur ligase, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: cyanophycin synthetase; COGs: COG4242 Cyanophycinase and related exopeptidase; InterPro IPR011811:IPR005320; KEGG: llo:LLO_2536 cyanophycinase; PFAM: Peptidase S51, dipeptidase E; PRIAM: Cyanophycinase; SPTR: cyanophycinase; TIGRFAM: Cyanophycinase YP_004657735.1 PFAM: Peptidase S51; TIGRFAM: cyanophycinase; COGs: COG1446 Asparaginase; InterPro IPR000246; KEGG: llo:LLO_2535 isoaspartyl dipeptidase with L-asparaginase activity; PFAM: Peptidase T2, asparaginase 2; PRIAM: Beta-aspartyl-peptidase; SPTR: Peptidase T2, asparaginase 2 YP_004657736.1 PFAM: Asparaginase; COGs: COG4930 ATP-dependent Lon-type protease; InterPro IPR013473:IPR014061; KEGG: sku:Sulku_1697 ATP-dependent lon-type protease; SPTR: ATP-dependent Lon-type protease; TIGRFAM: Conserved hypothetical protein CHP02653, peptidase S16 non-peptidase homologue; Conserved hypothetical protein CHP02688 YP_004657737.1 PFAM: Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: TIGR02688 family protein; conserved hypothetical protein; InterPro IPR014060:IPR013973; KEGG: maq:Maqu_0564 alkaline phosphatase domain-containing protein; PFAM: PglZ domain; SPTR: PglZ domain; TIGRFAM: Conserved hypothetical protein CHP02687 YP_004657738.1 PFAM: PglZ domain; TIGRFAM: TIGR02687 family protein; COGs: COG2865 transcriptional regulator protein; InterPro IPR007421:IPR000607; KEGG: bvu:BVU_1498 hypothetical protein; PFAM: ATPase associated with various cellular activities, AAA-4; Double-stranded RNA-specific adenosine deaminase (DRADA); SPTR: uncharacterized protein YP_004657739.1 PFAM: Divergent AAA domain; COGs: COG3550 conserved hypothetical protein; InterPro IPR012894:IPR012893; KEGG: cpc:Cpar_0148 HipA domain-containing protein; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; SPTR: HipA domain protein YP_004657740.1 PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain; InterPro IPR017508; KEGG: cpc:Cpar_0147 HipA N-terminal domain-containing protein; SPTR: HipA N-terminal domain protein; TIGRFAM: HipA, N-terminal YP_004657741.1 TIGRFAM: HipA N-terminal domain; InterPro IPR017507:IPR001387; KEGG: bvu:BVU_1930 transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: transcriptional regulator; TIGRFAM: Transcriptional regulator, HipB-like YP_004657742.1 PFAM: Helix-turn-helix; TIGRFAM: transcriptional regulator, y4mF family; COGs: COG1002 Type II restriction enzyme methylase subunits; KEGG: cpb:Cphamn1_1677 hypothetical protein; SPTR: uncharacterized protein YP_004657743.1 PFAM: Eco57I restriction endonuclease; KEGG: cyh:Cyan8802_2210 hypothetical protein; SPTR: uncharacterized protein YP_004657744.1 InterPro IPR014858; KEGG: sku:Sulku_1687 hypothetical protein; PFAM: Protein of unknown function DUF1788; SPTR: uncharacterized protein YP_004657745.1 PFAM: Domain of unknown function (DUF1788); InterPro IPR014948; KEGG: sku:Sulku_1686 hypothetical protein; PFAM: Protein of unknown function DUF1819, inner membrane; SPTR: uncharacterized protein YP_004657746.1 PFAM: inner membrane protein (DUF1819); SPTR: Transposase IS4 family protein YP_004657747.1 Prodigal; manually curated YP_004657748.1 PFAM: Transposase, Mutator family; COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; KEGG: rrs:RoseRS_0056 AAA ATPase; SPTR: Superfamily I DNA/RNA helicase YP_004657749.1 PFAM: Type III restriction enzyme, res subunit; KEGG: dae:Dtox_1537 transcriptional regulator; SPTR: uncharacterized protein YP_004657750.1 COGs: COG1483 ATPase (AAA+ superfamily); InterPro IPR007555; KEGG: dau:Daud_0361 hypothetical protein; SPTR: uncharacterized protein YP_004657751.1 PFAM: Protein of unknown function (DUF499); Prodigal; This gene is disrupted by insertion of repetitive element; manually curated YP_004657752.1 KEGG: lba:Lebu_1515 hypothetical protein; SPTR: uncharacterized protein YP_004657753.1 COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001:IPR001650:IPR006935; KEGG: cki:Calkr_0708 helicase domain-containing protein; PFAM: DNA/RNA helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal; SPTR: Helicase domain-containing protein YP_004657754.1 PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain YP_004657755.1 Prodigal; manually curated YP_004657756.1 Prodigal; manually curated YP_004657757.1 PFAM: Divergent AAA domain; InterPro IPR002145; PFAM: CopG-like DNA-binding YP_004657758.1 PFAM: Ribbon-helix-helix protein, copG family; KEGG: shg:Sph21_3498 VirE protein; SPTR: uncharacterized protein YP_004657761.1 InterPro IPR002104; KEGG: pdi:BDI_0498 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Integrase; manually curated YP_004657762.1 PFAM: Phage integrase YP_004657763.1 PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family; COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: sli:Slin_3124 hypothetical protein; PFAM: Protein of unknown function DUF164; SPTR: uncharacterized protein YP_004657764.1 PFAM: zinc ribbon domain; COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: sli:Slin_1640 sodium solute transporter; PFAM: Sodium/solute symporter; SPTR: SSS sodium solute transporter superfamily YP_004657765.1 PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family YP_004657766.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: prw:PsycPRwf_1005 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: 3-oxoacyl-acyl-carrier-protein reductase YP_004657767.1 PFAM: short chain dehydrogenase; KEGG: lbf:LBF_3189 hypothetical protein; SPTR: uncharacterized protein YP_004657768.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_1313 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Carbonyl reductase (NADPH); SPTR: Short-chain dehydrogenase/reductase SDR YP_004657769.1 PFAM: short chain dehydrogenase; COGs: COG0262 Dihydrofolate reductase; InterPro IPR001796; KEGG: dfe:Dfer_4255 dihydrofolate reductase; PFAM: Dihydrofolate reductase region; SPTR: Dihydrofolate reductase YP_004657770.1 PFAM: Dihydrofolate reductase; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_1311 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein YP_004657771.1 PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; HAMAP: tRNA(Ile)-lysidine synthase; InterPro IPR012795:IPR012796:IPR011063; KEGG: chu:CHU_3018 tRNA(Ile)-lysidine synthetase; PFAM: PP-loop; SPTR: tRNA(Ile)-lysidine synthase; TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; Lysidine-tRNA(Ile) synthetase, C-terminal YP_004657772.1 PFAM: TilS substrate C-terminal domain; PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, C-terminal domain; tRNA(Ile)-lysidine synthetase, N-terminal domain; InterPro IPR006311:IPR012307; KEGG: dfe:Dfer_0589 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004657773.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR003088:IPR005084; KEGG: dfe:Dfer_2188 cytochrome c class I; PFAM: Cytochrome c, class I; PKD; Carbohydrate binding domain, family 6; SMART: PKD; SPTR: Cytochrome c class I YP_004657774.1 PFAM: Cytochrome c; Trehalose utilisation; Carbohydrate binding module (family 6); PKD domain; Domain of unknown function (DUF3471); COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: dfe:Dfer_2189 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase YP_004657775.1 PFAM: NUDIX domain; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593:IPR001140:IPR003439; KEGG: phe:Phep_0117 ABC transporter-like protein; PFAM: ABC transporter-like; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related YP_004657776.1 PFAM: ABC transporter; ABC transporter transmembrane region YP_004657778.1 COGs: COG0520 Selenocysteine lyase; InterPro IPR006311:IPR000192; KEGG: sli:Slin_1756 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Isopenicillin-N epimerase; SPTR: Aminotransferase class V YP_004657779.1 PFAM: Aminotransferase class-V YP_004657780.1 COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: rlg:Rleg_0575 LemA family protein; PFAM: LemA; SPTR: LemA family protein YP_004657781.1 PFAM: LemA family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: ran:Riean_1895 RNA polymerase, sigma-24 subunit, ecf subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70 YP_004657782.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: sli:Slin_6311 hypothetical protein; SPTR: uncharacterized protein YP_004657784.1 COGs: COG3735 conserved hypothetical protein; InterPro IPR010891; KEGG: sli:Slin_6313 GumN family protein; PFAM: GumN; SPTR: GumN family protein YP_004657785.1 PFAM: GumN protein; COGs: COG2103 sugar phosphate isomerase; HAMAP: N-acetylmuramic acid 6-phosphate etherase; InterPro IPR005488; KEGG: dfe:Dfer_3685 N-acetylmuramic acid-6-phosphate etherase; SPTR: Glucokinase regulatory-like protein; TIGRFAM: Glucokinase regulatory-like protein YP_004657786.1 PFAM: SIS domain; TIGRFAM: N-acetylmuramic acid 6-phosphate etherase; COGs: COG0688 Phosphatidylserine decarboxylase; HAMAP: Phosphatidylserine decarboxylase proenzyme; InterPro IPR004428:IPR003817; KEGG: dfe:Dfer_3556 phosphatidylserine decarboxylase; PFAM: Phosphatidylserine decarboxylase-related; PRIAM: Phosphatidylserine decarboxylase; SPTR: Phosphatidylserine decarboxylase proenzyme; TIGRFAM: Phosphatidylserine decarboxylase-related protein YP_004657787.1 PFAM: Phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase precursor-related protein; COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006097:IPR006096; KEGG: sli:Slin_5648 Glu/Leu/Phe/Val dehydrogenase; PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation region; PRIAM: Glutamate dehydrogenase (NAD(P)(+)); SPTR: Glu/Leu/Phe/Val dehydrogenase YP_004657788.1 PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; KEGG: sli:Slin_5647 TraR/DksA family transcriptional regulator; SPTR: Transcriptional regulator, TraR/DksA family YP_004657789.1 PFAM: Prokaryotic dksA/traR C4-type zinc finger; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_2659 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 2,4-dienoyl-CoA reductase (NADPH); SPTR: Short-chain dehydrogenase/reductase SDR YP_004657790.1 PFAM: short chain dehydrogenase; COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: mtt:Ftrac_2341 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR: Enoyl-CoA hydratase/isomerase YP_004657791.1 PFAM: Enoyl-CoA hydratase/isomerase; COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277; KEGG: rca:Rcas_3473 cystathionine gamma-synthase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; PRIAM: Cystathionine gamma-lyase; SPTR: Cystathionine gamma-synthase YP_004657792.1 PFAM: Cys/Met metabolism PLP-dependent enzyme YP_004657793.1 PFAM: CHC2 zinc finger YP_004657794.1 KEGG: sli:Slin_0693 hypothetical protein; SPTR: uncharacterized protein YP_004657796.1 KEGG: zpr:ZPR_2780 transposase; SPTR: Phage integrase YP_004657797.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: mtt:Ftrac_1206 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Phage integrase YP_004657798.1 PFAM: Phage integrase YP_004657799.1 InterPro IPR001387; KEGG: nla:NLA_19700 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix domain protein YP_004657800.1 PFAM: Helix-turn-helix YP_004657803.1 KEGG: dfe:Dfer_0539 integrase; SPTR: Integrase YP_004657804.1 Prodigal; manually curated YP_004657805.1 manually curated YP_004657806.1 KEGG: fsu:Fisuc_1557 hypothetical protein; SPTR: CRISPR-associated protein, TM1811 family YP_004657807.1 InterPro IPR005537; KEGG: vvy:VVA1540 hypothetical protein; PFAM: Protein of unknown function DUF324; SPTR: CRISPR-associated RAMP protein YP_004657808.1 PFAM: RAMP superfamily; Prodigal; manually curated YP_004657809.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; Prodigal; manually curated YP_004657810.1 PFAM: CRISPR-associated protein (cas_TM1812); TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated DxTHG motif protein; InterPro IPR002559; KEGG: app:CAP2UW1_1881 transposase IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase IS4 family protein YP_004657811.1 PFAM: Transposase DDE domain YP_004657813.1 InterPro IPR000601; KEGG: cpi:Cpin_6914 PKD domain containing protein; PFAM: PKD; SPTR: PKD domain containing protein YP_004657814.1 PFAM: PKD domain; manually curated YP_004657815.1 PFAM: Uncharacterised protein family (UPF0236); InterPro IPR005151; KEGG: ppn:Palpr_0648 peptidase S41; PFAM: Peptidase S41; SPTR: uncharacterized protein YP_004657816.1 PFAM: Peptidase S41; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR001375; KEGG: sli:Slin_0636 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein YP_004657817.1 PFAM: Prolyl oligopeptidase; KEGG: sur:STAUR_3803 hypothetical protein; SPTR: Conserved uncharacterized protein YP_004657818.1 PFAM: Protein of unknown function (DUF2721); InterPro IPR000086; KEGG: dfe:Dfer_1953 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase YP_004657819.1 PFAM: NUDIX domain; KEGG: dfe:Dfer_4518 hypothetical protein; SPTR: uncharacterized protein YP_004657820.1 PFAM: HTH domain; COGs: COG2195 Di- and tripeptidase; InterPro IPR002933:IPR011650:IPR010161; KEGG: sli:Slin_2425 peptidase T; PFAM: Peptidase M20, dimerisation; Peptidase M20; PRIAM: Tripeptide aminopeptidase; SPTR: Peptidase T; TIGRFAM: Peptidase M20B, tripeptide aminopeptidase YP_004657821.1 PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: peptidase T; InterPro IPR012910; KEGG: sli:Slin_3208 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug YP_004657822.1 PFAM: TonB-dependent Receptor Plug Domain; MG2 domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; KEGG: fbc:FB2170_06930 hypothetical protein; SPTR: uncharacterized protein YP_004657823.1 PFAM: Phytanoyl-CoA dioxygenase (PhyH); COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: fbc:FB2170_06925 transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator YP_004657824.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR011579; KEGG: fba:FIC_01835 ATPase; SPTR: ATPase YP_004657825.1 PFAM: Archaeal ATPase; manually curated YP_004657826.1 Prodigal; manually curated YP_004657827.1 PFAM: Transposase DDE domain; COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR001264:IPR001460; KEGG: dfe:Dfer_4764 glycosyl transferase 51; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Glycosyl transferase 51 YP_004657828.1 PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931:IPR013589; KEGG: dfe:Dfer_3510 transglutaminase domain protein; PFAM: Transglutaminase-like; Bacterial transglutaminase-like, N-terminal; SMART: Transglutaminase-like; SPTR: Transglutaminase domain protein YP_004657829.1 PFAM: Transglutaminase-like superfamily; Bacterial transglutaminase-like N-terminal region; COGs: COG2308 conserved hypothetical protein; InterPro IPR007297:IPR007302:IPR007296; KEGG: dfe:Dfer_3511 protein of unknown function DUF404; PFAM: Protein of unknown function DUF404, bacteria N-terminal; Protein of unknown function DUF407; Protein of unknown function DUF403, bacteria; SPTR: uncharacterized protein YP_004657830.1 PFAM: Bacterial domain of unknown function (DUF403); Domain of unknown function (DUF407); Domain of unknown function (DUF404); COGs: COG4196 conserved hypothetical protein; InterPro IPR002931:IPR013589:IPR018667; KEGG: dfe:Dfer_3512 transglutaminase domain protein; PFAM: Protein of unknown function DUF2126; Bacterial transglutaminase-like, N-terminal; Transglutaminase-like; SMART: Transglutaminase-like; SPTR: Transglutaminase domain protein YP_004657831.1 PFAM: Transglutaminase-like superfamily; Bacterial transglutaminase-like N-terminal region; amidoligase enzyme (DUF2126); KEGG: dfe:Dfer_1486 glycoside hydrolase 30; SPTR: xylanase YP_004657834.1 KEGG: dfe:Dfer_4891 hypothetical protein; SPTR: uncharacterized protein YP_004657835.1 PFAM: Protein of unknown function (DUF2911); COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sli:Slin_5789 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004657836.1 PFAM: Xylose isomerase-like TIM barrel; InterPro IPR011445:IPR011933; KEGG: dfe:Dfer_5768 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Double-transmembrane region, N-terminal YP_004657837.1 PFAM: Aerotolerance regulator N-terminal; CARDB; TIGRFAM: N-terminal double-transmembrane domain; COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: sli:Slin_6275 hypothetical protein; SPTR: uncharacterized protein YP_004657838.1 KEGG: aas:Aasi_1435 hypothetical protein; SPTR: ankyrin repeat protein YP_004657839.1 InterPro IPR012910; KEGG: cpi:Cpin_5200 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug YP_004657840.1 PFAM: TonB-dependent Receptor Plug Domain; COGs: COG0579 dehydrogenase; InterPro IPR006231; KEGG: dfe:Dfer_4539 malate:quinone oxidoreductase; PFAM: Malate:quinone-oxidoreductase; PRIAM: Malate dehydrogenase (acceptor); SPTR: Probable malate:quinone oxidoreductase YP_004657841.1 PFAM: Malate:quinone oxidoreductase (Mqo); TIGRFAM: malate:quinone-oxidoreductase; InterPro IPR019734:IPR001440:IPR013105; KEGG: azl:AZL_022990 hypothetical protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: uncharacterized protein YP_004657842.1 PFAM: Tetratricopeptide repeat; Dolichyl-phosphate-mannose-protein mannosyltransferase; InterPro IPR019734:IPR001440; KEGG: dfe:Dfer_5482 tetratricopeptide domain protein; PFAM: Tetratricopeptide TPR-1; SPTR: Tetratricopeptide domain protein YP_004657843.1 COGs: COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; HAMAP: Phosphoribosylaminoimidazole-succinocarboxamide synthase; InterPro IPR001636; KEGG: dfe:Dfer_5481 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; PRIAM: Phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: Phosphoribosylaminoimidazole-succinocarboxamide synthase YP_004657844.1 PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: dfe:Dfer_5480 sulfate transporter/antisigma-factor antagonist STAS; SPTR: Sulfate transporter/antisigma-factor antagonist STAS YP_004657845.1 PFAM: STAS domain; COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III; HAMAP: Ribonuclease Z; InterPro IPR013471; KEGG: sli:Slin_2672 beta-lactamase; SPTR: Ribonuclease Z YP_004657846.1 PFAM: Metallo-beta-lactamase superfamily; TIGRFAM: ribonuclease Z; KEGG: dfe:Dfer_5010 hypothetical protein; SPTR: uncharacterized protein YP_004657847.1 COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR013027:IPR006005; KEGG: dfe:Dfer_5478 glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Glutamate synthase (NADH); SPTR: Glutamate synthase, NADH/NADPH, small subunit; TIGRFAM: Glutamate synthase, NADH/NADPH, small subunit 1 YP_004657848.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit; COGs: COG0069 Glutamate synthase domain 2; InterPro IPR000583:IPR006982:IPR002932:IPR002489; KEGG: dfe:Dfer_5479 glutamate synthase (ferredoxin); PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal; PRIAM: Glutamate synthase (ferredoxin); SPTR: Glutamate synthase (Ferredoxin) YP_004657849.1 PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sli:Slin_3261 beta-lactamase; PRIAM: Beta-lactamase; SPTR: Beta-lactamase YP_004657850.1 PFAM: Metallo-beta-lactamase superfamily; COGs: COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain; HAMAP: Phosphoribosylformylglycinamidine synthase 2; InterPro IPR000728:IPR010918:IPR010074; KEGG: sli:Slin_2274 phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: Phosphoribosylformylglycinamidine synthase 2; TIGRFAM: Phosphoribosylformylglycinamidine synthase II YP_004657851.1 PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase II; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR003593:IPR005074:IPR001140:IPR003439; KEGG: shg:Sph21_0591 xenobiotic-transporting ATPase; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Bacteriocin ABC transporter, ATP-binding/permease YP_004657852.1 PFAM: ABC transporter transmembrane region; Peptidase C39 family; ABC transporter; InterPro IPR013740; KEGG: dfe:Dfer_1269 hypothetical protein; PFAM: Redoxin; SPTR: uncharacterized protein YP_004657853.1 PFAM: AhpC/TSA family; KEGG: shg:Sph21_0589 hypothetical protein; SPTR: uncharacterized protein YP_004657855.1 InterPro IPR001387; KEGG: chu:CHU_0810 transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: uncharacterized protein YP_004657856.1 PFAM: Helix-turn-helix; KEGG: sli:Slin_3425 hypothetical protein; SPTR: uncharacterized protein YP_004657857.1 COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056; KEGG: chu:CHU_1605 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: Ribulose-phosphate 3-epimerase; TIGRFAM: Ribulose-phosphate 3-epimerase YP_004657858.1 PFAM: Ribulose-phosphate 3 epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; InterPro IPR018060:IPR000005:IPR014048; KEGG: amr:AM1_4991 methylated DNA-protein cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YP_004657859.1 PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; TIGRFAM: O-6-methylguanine DNA methyltransferase YP_004657860.1 InterPro IPR000086; KEGG: dfe:Dfer_5005 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase YP_004657861.1 PFAM: NUDIX domain; KEGG: sli:Slin_1645 hypothetical protein; SPTR: uncharacterized protein YP_004657862.1 PFAM: Protein of unknown function (DUF2911); COGs: COG1259 conserved hypothetical protein; InterPro IPR003729:IPR001943; KEGG: dfe:Dfer_1242 protein of unknown function DUF151; PFAM: Protein of unknown function DUF151; UvrB/UvrC protein; SPTR: uncharacterized protein YP_004657863.1 PFAM: Uncharacterised ACR, COG1259; UvrB/uvrC motif YP_004657864.1 COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR014730:IPR014731; KEGG: dfe:Dfer_1241 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SPTR: Electron transfer flavoprotein alpha subunit YP_004657865.1 PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain; COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR014730; KEGG: dfe:Dfer_1240 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SPTR: Electron transfer flavoprotein alpha/beta-subunit YP_004657866.1 PFAM: Electron transfer flavoprotein domain; KEGG: dfe:Dfer_1239 hypothetical protein; SPTR: uncharacterized protein YP_004657867.1 COGs: COG0621 2-methylthioadenine synthetase; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; InterProIPR006638:IPR013848:IPR007197:IPR002792:IPR 005839:IPR006463; KEGG: dfe:Dfer_2727 (dimethylallyl)adenosine tRNA methylthiotransferase; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: RNA modification enzyme, MiaB family; TIGRFAM: Methylthiotransferase; tRNA-i(6)A37 modification enzyme MiaB YP_004657868.1 PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; radical SAM methylthiotransferase, MiaB/RimO family; COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains; InterPro IPR003593:IPR002078:IPR002197; KEGG: sli:Slin_0990 fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; SPTR: Sigma54 specific transcriptional regulator, Fis family YP_004657869.1 PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; KEGG: sli:Slin_0989 hypothetical protein; SPTR: uncharacterized protein YP_004657870.1 KEGG: sli:Slin_0988 hypothetical protein; SPTR: uncharacterized protein YP_004657871.1 InterPro IPR004692; KEGG: dfe:Dfer_2731 preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; SPTR: Preprotein translocase, SecG subunit; TIGRFAM: Preprotein translocase SecG subunit YP_004657872.1 PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit YP_004657873.1 KEGG: mea:Mex_2p0338 hypothetical protein; SPTR: uncharacterized protein YP_004657874.1 PFAM: DNA N-6-adenine-methyltransferase (Dam) YP_004657875.1 InterPro IPR010324; KEGG: mct:MCR_0519 type II restriction endonuclease DpnI; PFAM: Dam-replacing; PRIAM: Type II site-specific deoxyribonuclease; SPTR: type II restriction endonuclease DpnI YP_004657876.1 PFAM: Dam-replacing family; COGs: COG5646 conserved hypothetical protein; InterPro IPR014922; KEGG: rci:RCIX1712 hypothetical protein; PFAM: Protein of unknown function DUF1801; SPTR: uncharacterized protein YP_004657877.1 PFAM: Domain of unknown function (DU1801); COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR003661:IPR003594; KEGG: sli:Slin_1994 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase YP_004657878.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; InterPro IPR013148; KEGG: fjo:Fjoh_3966 glycosyl hydrolase 32 protein; PFAM: Glycosyl hydrolases family 32, N-terminal; SPTR: Glycoside hydrolase-like protein YP_004657879.1 PFAM: Glycosyl hydrolases family 32 N-terminal domain; COGs: COG0438 Glycosyltransferase; InterPro IPR001296:IPR006380:IPR012821; KEGG: lby:Lbys_0264 sucrose-phosphate synthase., sucrose-phosphate phosphatase; PFAM: Sucrose-6F-phosphate phosphohydrolase, plant/cyanobacteria; Glycosyl transferase, group 1; PRIAM: Sucrose-phosphate synthase., Sucrose-phosphate phosphatase; SPTR: Sucrose-phosphate synthase., Sucrose-phosphate phosphatase; TIGRFAM: Sucrose phosphate synthase, sucrose phosphatase-like region YP_004657880.1 PFAM: Sucrose synthase; Glycosyl transferases group 1; Sucrose-6F-phosphate phosphohydrolase; TIGRFAM: sucrose-6F-phosphate phosphohydrolase; sucrose-phosphate synthase, , glycosyltransferase domain; sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial; manually curated YP_004657881.1 PFAM: Na+/H+ antiporter 1; TIGRFAM: Na+/H+ antiporter NhaA; KEGG: chu:CHU_0224 hypothetical protein; SPTR: uncharacterized protein YP_004657882.1 KEGG: chu:CHU_0225 hypothetical protein; SPTR: uncharacterized protein YP_004657883.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: chu:CHU_0226 cyclic nucleotide binding regulatory protein; PFAM: Cyclic nucleotide-binding; SPTR: Cyclic nucleotide binding regulatory protein YP_004657884.1 PFAM: Cyclic nucleotide-binding domain; KEGG: rca:Rcas_0119 hypothetical protein; SPTR: uncharacterized protein YP_004657885.1 COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; InterPro IPR003782; KEGG: sli:Slin_5146 electron transporter SCO1/SenC; PFAM: Copper chaperone SCO1/SenC; SPTR: Electron transport protein SCO1/SenC YP_004657886.1 PFAM: SCO1/SenC; COGs: COG2849 conserved hypothetical protein; KEGG: sli:Slin_5145 hypothetical protein; SPTR: MORN variant repeat protein YP_004657887.1 PFAM: MORN repeat variant; KEGG: sli:Slin_5144 hypothetical protein; SPTR: Conserved hypothetical lipoprotein YP_004657888.1 KEGG: dfe:Dfer_1267 hypothetical protein; SPTR: uncharacterized protein YP_004657889.1 COGs: COG3832 conserved hypothetical protein; InterPro IPR013538; KEGG: chu:CHU_1110 hypothetical protein; PFAM: Activator of Hsp90 ATPase homologue 1-like; SPTR: uncharacterized protein YP_004657890.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein; manually curated YP_004657891.1 KEGG: chu:CHU_3597 hypothetical protein; SPTR: uncharacterized protein YP_004657892.1 KEGG: sal:Sala_2944 DoxX; SPTR: DoxX YP_004657894.1 Prodigal; manually curated YP_004657895.1 PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit; KEGG: dfe:Dfer_0195 hypothetical protein; SPTR: uncharacterized protein YP_004657896.1 KEGG: dfe:Dfer_0194 hypothetical protein; SPTR: uncharacterized protein YP_004657897.1 manually curated YP_004657898.1 PFAM: Uncharacterised BCR, COG1649; COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: fjo:Fjoh_1286 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004657899.1 PFAM: Carbon-nitrogen hydrolase; COGs: COG0314 Molybdopterin converting factor large subunit; InterPro IPR003448; KEGG: cpi:Cpin_0207 molybdopterin biosynthesis MoaE protein; PFAM: Molybdopterin biosynthesis MoaE; SPTR: MoaE protein YP_004657900.1 PFAM: MoaE protein; COGs: COG1408 phosphohydrolase; InterPro IPR004843; KEGG: dfe:Dfer_4076 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase YP_004657901.1 PFAM: Calcineurin-like phosphoesterase; COGs: COG2388 acetyltransferase; KEGG: dmr:Deima_0861 acetyltransferase; SPTR: Acetyltransferase YP_004657903.1 COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094:IPR004113; KEGG: azo:azo3432 D-lactate dehydrogenase; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; PRIAM: D-lactate dehydrogenase (cytochrome); SPTR: Probable D-lactate dehydrogenase YP_004657904.1 PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; TIGRFAM: glycolate oxidase, subunit GlcD; SPTR: Transposase IS4 family protein YP_004657905.1 COGs: COG1764 redox protein regulator of disulfide bond formation; InterPro IPR003718:IPR019904; KEGG: chu:CHU_2252 osmotically inducible protein; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: Osmotically inducible protein; TIGRFAM: Peroxiredoxin, osmotically inducible protein C, subgroup YP_004657906.1 PFAM: OsmC-like protein; TIGRFAM: peroxiredoxin, OsmC subfamily; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: phe:Phep_3453 major facilitator superfamily protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004657907.1 PFAM: Major Facilitator Superfamily; KEGG: phe:Phep_3454 hypothetical protein; SPTR: uncharacterized protein YP_004657908.1 InterPro IPR001647; KEGG: phe:Phep_3455 regulatory protein TetR; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family YP_004657909.1 PFAM: Bacterial regulatory proteins, tetR family YP_004657910.1 KEGG: dfe:Dfer_3342 hypothetical protein; SPTR: uncharacterized protein YP_004657911.1 PFAM: Acetyltransferase (GNAT) family; KEGG: dfe:Dfer_3341 protein of unknown function DUF1486; SPTR: uncharacterized protein YP_004657912.1 PFAM: SnoaL-like polyketide cyclase; TIGRFAM: conserved hypothetical protein, steroid delta-isomerase-related; COGs: COG2367 Beta-lactamase class A; InterPro IPR001466; KEGG: aby:ABAYE3623 beta-lactamase VEB-1; PFAM: Beta-lactamase-related; PRIAM: Beta-lactamase; SPTR: Beta-lactamase YP_004657913.1 PFAM: Beta-lactamase; COGs: COG1231 Monoamine oxidase; InterPro IPR002937; KEGG: rpf:Rpic12D_4699 amine oxidase; PFAM: Amine oxidase; PRIAM: Polyamine oxidase; SPTR: Amine oxidase YP_004657914.1 PFAM: Flavin containing amine oxidoreductase; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: cpc:Cpar_0956 NmrA family protein; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NmrA family protein YP_004657915.1 PFAM: NmrA-like family; KEGG: sli:Slin_3048 rifampin ADP-ribosyl transferase; SPTR: Rifampin ADP-ribosyl transferase YP_004657916.1 PFAM: DNA/RNA tunnel of bacterial DNA dependent RNA polymerase; COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014001:IPR007409:IPR006935; KEGG: chu:CHU_2936 restriction enzyme type I helicase subunit; type I restriction enzyme HsdR; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; SPTR: Restriction enzyme type I helicase subunit; type I restriction enzyme HsdR YP_004657917.1 PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: sli:Slin_6960 transcriptional regulator, ArsR family; SMART: ATPase, AAA+ type, core; SPTR: Transcriptional regulator, ArsR family YP_004657918.1 COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: mmq:MmarC5_0640 restriction modification system DNA specificity subunit; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Restriction modification system DNA specificity domain YP_004657919.1 PFAM: Type I restriction modification DNA specificity domain YP_004657920.1 Prodigal; manually curated YP_004657921.1 InterPro IPR010686; KEGG: dfe:Dfer_1678 protein of unknown function DUF1264; PFAM: Protein of unknown function DUF1264; SPTR: uncharacterized protein YP_004657922.1 PFAM: Protein of unknown function (DUF1264); COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: fba:FIC_01703 L-sorbosone dehydrogenase; SPTR: L-sorbosone dehydrogenase YP_004657923.1 PFAM: Glucose / Sorbosone dehydrogenase; InterPro IPR013658; KEGG: fba:FIC_01704 hypothetical protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; SPTR: uncharacterized protein YP_004657924.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: chu:CHU_2072 hypothetical protein; SPTR: uncharacterized protein YP_004657925.1 PFAM: Protein of unknown function (DUF2938); COGs: COG3546 Mn-containing catalase; InterPro IPR007760; KEGG: cpi:Cpin_5037 catalase; PFAM: Catalase, manganese; PRIAM: Catalase; SPTR: Catalase YP_004657926.1 PFAM: Manganese containing catalase; COGs: COG2761 dithiol-disulfide isomerase involved in polyketide biosynthesis; KEGG: dfe:Dfer_1561 DsbA oxidoreductase; SPTR: DSBA oxidoreductase YP_004657927.1 PFAM: DSBA-like thioredoxin domain; COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 013767:IPR013655:IPR013656; KEGG: sli:Slin_0618 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold-4; PAS fold-3; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS YP_004657928.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; KEGG: dfe:Dfer_5722 hypothetical protein; SPTR: uncharacterized protein YP_004657929.1 PFAM: Surface antigen YP_004657930.1 InterPro IPR006680; KEGG: sli:Slin_3381 amidohydrolase; PFAM: Amidohydrolase 1; SPTR: Amidohydrolase YP_004657931.1 PFAM: Amidohydrolase; InterPro IPR000923:IPR013428; KEGG: dfe:Dfer_5354 membrane-bound dehydrogenase domain protein; PFAM: Blue (type 1) copper domain; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase YP_004657932.1 PFAM: Copper binding proteins, plastocyanin/azurin family; TIGRFAM: membrane-bound dehydrogenase domain; KEGG: chu:CHU_1125 hypothetical protein; SPTR: uncharacterized protein YP_004657935.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 013655:IPR013656; KEGG: sli:Slin_0618 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-4; PAS fold-3; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS YP_004657936.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; KEGG: dfe:Dfer_2156 hypothetical protein; SPTR: uncharacterized protein YP_004657937.1 manually curated YP_004657938.1 PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb) YP_004657939.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: phe:Phep_0177 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein YP_004657940.1 PFAM: alpha/beta hydrolase fold; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR001258; KEGG: cpi:Cpin_1469 NHL repeat containing protein; PFAM: NHL repeat; SPTR: NHL repeat containing protein YP_004657941.1 PFAM: Glucose / Sorbosone dehydrogenase; Membrane bound L-sorbosone dehydrogenase; COGs: COG1023 6-phosphogluconate dehydrogenase; InterPro IPR006115:IPR006114:IPR004849; KEGG: cbk:CLL_A1312 6-phosphogluconate dehydrogenase-like protein; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal; PRIAM: Phosphogluconate dehydrogenase (decarboxylating); SPTR: 6-phosphogluconate dehydrogenase (Decarboxylating); TIGRFAM: 6-phosphogluconate dehydrogenase related protein YP_004657942.1 PFAM: 6-phosphogluconate dehydrogenase, C-terminal domain; NAD binding domain of 6-phosphogluconate dehydrogenase; TIGRFAM: 6-phosphogluconate dehydrogenase (decarboxylating); 6-phosphogluconate dehydrogenase, decarboxylating; KEGG: sli:Slin_4811 hypothetical protein; SPTR: uncharacterized protein YP_004657943.1 InterPro IPR012910:IPR000531; KEGG: sli:Slin_4810 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: outer membrane protein, probably involved in nutrient binding YP_004657944.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: caa:Caka_0919 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004657945.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: tbo:Thebr_0618 carbohydrate kinase, FGGY-like protein; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; PRIAM: Gluconokinase; SPTR: Carbohydrate kinase, FGGY-like protein YP_004657946.1 PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: gluconate kinase, FGGY type; KEGG: geo:Geob_2464 beta-propeller repeat TECPR; SPTR: Beta-propeller repeat TECPR YP_004657947.1 KEGG: dfe:Dfer_2950 hypothetical protein; SPTR: uncharacterized protein YP_004657948.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: sli:Slin_0019 peptidase M16 domain protein; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: Peptidase M16 domain protein YP_004657949.1 PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16); COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase; HAMAP: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; InterPro IPR003526; KEGG: dfe:Dfer_2948 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; SPTR: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core YP_004657950.1 PFAM: YgbB family; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; COGs: COG2159 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: dfe:Dfer_2949 amidohydrolase 2; PFAM: Amidohydrolase 2; SPTR: Amidohydrolase 2 YP_004657951.1 PFAM: Amidohydrolase; COGs: COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; InterPro IPR006218:IPR006269; KEGG: sli:Slin_2802 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-8-phosphooctulonate synthase; SPTR: 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase YP_004657952.1 PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR003313:IPR000005; KEGG: cly:Celly_1434 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; AraC protein, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulatory protein, AraC-type YP_004657953.1 PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: fjo:Fjoh_1731 hypothetical protein; SPTR: uncharacterized protein YP_004657956.1 COGs: COG0290 Translation initiation factor 3 (IF-3); HAMAP: Translation initiation factor IF-3; InterPro IPR019814:IPR019815:IPR001288; KEGG: sli:Slin_2218 translation initiation factor IF-3; PFAM: Translation initiation factor 3, C-terminal; Translation initiation factor 3, N-terminal; SPTR: Translation initiation factor IF-3; TIGRFAM: Translation initiation factor 3 YP_004657957.1 PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: sli:Slin_4002 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004657958.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; KEGG: sli:Slin_1460 hypothetical protein; SPTR: uncharacterized protein YP_004657959.1 KEGG: cpi:Cpin_0105 SMC domain protein; SPTR: SMC domain protein YP_004657960.1 InterPro IPR013658; KEGG: chu:CHU_3578 ATP/GTP-binding; PFAM: SMP-30/Gluconolaconase/LRE-like region; SPTR: uncharacterized protein YP_004657961.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; InterPro IPR010496; KEGG: dfe:Dfer_4384 protein of unknown function DUF1080; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein YP_004657962.1 PFAM: Domain of Unknown Function (DUF1080); COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001:IPR001650:IPR011545; KEGG: chu:CHU_2570 ATP-dependent RNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Helicase-like:DEAD/DEAH box helicase-like YP_004657963.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; KEGG: dfe:Dfer_4566 Fur family transcriptional regulator protein; SPTR: Fur family transcriptional regulator protein YP_004657964.1 PFAM: Ferric uptake regulator family; COGs: COG0521 Molybdopterin biosynthesis protein; InterPro IPR001453:IPR020817; KEGG: sli:Slin_5694 molybdenum cofactor synthesis protein; PFAM: Molybdopterin binding; SPTR: Molybdenum cofactor biosynthesis protein Mog; TIGRFAM: Molybdenum cofactor synthesis YP_004657965.1 PFAM: Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor synthesis domain; COGs: COG2942 N-acyl-D-glucosamine 2-epimerase; InterPro IPR010819; KEGG: sli:Slin_6381 N-acylglucosamine 2-epimerase; PFAM: N-acylglucosamine 2-epimerase; SPTR: N-acylglucosamine 2-epimerase YP_004657966.1 PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) YP_004657967.1 SPTR: uncharacterized protein YP_004657968.1 COGs: COG1278 Cold shock protein; InterPro IPR011129:IPR002059; KEGG: chu:CHU_2346 cold-shock DNA-binding protein family protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding domain protein YP_004657969.1 PFAM: 'Cold-shock' DNA-binding domain; COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: dfe:Dfer_2563 ApbE family lipoprotein; PFAM: ApbE-like lipoprotein; SPTR: ApbE family lipoprotein YP_004657970.1 PFAM: ApbE family; COGs: COG1045 Serine acetyltransferase; InterPro IPR001451; KEGG: sli:Slin_1590 serine O-acetyltransferase; PFAM: Bacterial transferase hexapeptide repeat; PRIAM: Serine O-acetyltransferase; SPTR: Serine O-acetyltransferase YP_004657971.1 TIGRFAM: serine O-acetyltransferase; InterPro IPR001647; KEGG: dfe:Dfer_0242 transcriptional regulator, TetR family; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family YP_004657972.1 PFAM: Bacterial regulatory proteins, tetR family; COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: cpi:Cpin_6901 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Peroxiredoxin YP_004657973.1 PFAM: AhpC/TSA family; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: sli:Slin_1583 ROK family protein; PFAM: ROK; SPTR: ROK family protein YP_004657974.1 PFAM: ROK family; COGs: COG2947 conserved hypothetical protein; InterPro IPR002740; KEGG: psn:Pedsa_1869 protein of unknown function DUF55; PFAM: Uncharacterised protein family UPF0310; SPTR: Protein of hypothetical function DUF55 YP_004657975.1 PFAM: Protein of unknown function DUF55; KEGG: dfe:Dfer_1218 hypothetical protein; SPTR: uncharacterized protein YP_004657976.1 COGs: COG1092 SAM-dependent methyltransferase; KEGG: sli:Slin_2221 SAM dependent methyltransferase; SPTR: SAM dependent methyltransferase YP_004657977.1 PFAM: S-adenosylmethionine-dependent methyltransferase; InterPro IPR019734:IPR001440; KEGG: sli:Slin_2220 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein YP_004657978.1 COGs: COG0441 Threonyl-tRNA synthetase; InterProIPR004095:IPR012947:IPR002314:IPR004154:IPR 002320; KEGG: sli:Slin_2219 threonyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding; SPTR: Threonyl-tRNA synthetase; TIGRFAM: Threonyl-tRNA synthetase, class IIa YP_004657979.1 PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TGS domain; TIGRFAM: threonyl-tRNA synthetase; COGs: COG0337 3-dehydroquinate synthetase; HAMAP: 3-dehydroquinate synthase; InterPro IPR002658:IPR016037; KEGG: dfe:Dfer_3640 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase AroB; PRIAM: 3-dehydroquinate synthase; SPTR: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup YP_004657980.1 PFAM: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; KEGG: dfe:Dfer_3639 lipoprotein; SPTR: Lipoprotein YP_004657981.1 InterPro IPR020818; KEGG: sli:Slin_1082 chaperonin Cpn10; PFAM: Chaperonin Cpn10; SPTR: Chaperonin Cpn10 YP_004657982.1 PFAM: Chaperonin 10 Kd subunit; InterPro IPR019734:IPR001440; KEGG: sli:Slin_1363 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein YP_004657983.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: chu:CHU_1408 acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA oxidase/dehydrogenase, type 1; PRIAM: Glutaryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase YP_004657984.1 PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: fbc:FB2170_00720 dolichyl-phosphate-mannose-protein mannosyltransferase; PFAM: Glycosyl transferase, family 39; SPTR: Dolichyl-phosphate-mannose-protein mannosyltransferase YP_004657985.1 KEGG: phe:Phep_0720 hypothetical protein; SPTR: uncharacterized protein YP_004657986.1 KEGG: dfe:Dfer_3153 hypothetical protein; SPTR: uncharacterized protein YP_004657987.1 COGs: COG1197 Transcription-repair coupling factor (superfamily II helicase); InterProIPR014001:IPR001650:IPR003711:IPR011545:IPR 005118:IPR004576; KEGG: dfe:Dfer_3695 transcription-repair coupling factor; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Transcription factor CarD; DNA/RNA helicase, C-terminal; Transcription-repair-coupling factor; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Transcription-repair coupling factor; TIGRFAM: Transcription-repair coupling factor YP_004657988.1 PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd) YP_004657989.1 KEGG: sli:Slin_6323 lipoprotein; SPTR: lipoprotein YP_004657990.1 KEGG: sli:Slin_3385 hypothetical protein; SPTR: uncharacterized protein YP_004657991.1 KEGG: sli:Slin_5712 hypothetical protein; SPTR: uncharacterized protein YP_004657992.1 Prodigal; manually curated YP_004657993.1 COGs: COG4632 Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase; InterPro IPR018711; KEGG: phe:Phep_0002 hypothetical protein; PFAM: Protein of unknown function DUF2233, periplasmic; SPTR: uncharacterized protein YP_004657994.1 PFAM: Predicted periplasmic protein (DUF2233); KEGG: dfe:Dfer_5769 hypothetical protein; SPTR: uncharacterized protein YP_004657995.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: sli:Slin_0656 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein YP_004657996.1 PFAM: alpha/beta hydrolase fold; InterPro IPR002123; KEGG: dfe:Dfer_4159 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase YP_004657997.1 PFAM: Acyltransferase; KEGG: sli:Slin_6034 hypothetical protein; SPTR: uncharacterized protein YP_004657998.1 COGs: COG0696 Phosphoglyceromutase; HAMAP: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; InterPro IPR011258:IPR006124:IPR005995; KEGG: dfe:Dfer_4375 phosphoglyceromutase; PFAM: BPG-independent PGAM, N-terminal; Metalloenzyme; PRIAM: Phosphoglycerate mutase; SPTR: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; TIGRFAM: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent YP_004657999.1 PFAM: Metalloenzyme superfamily; BPG-independent PGAM N-terminus (iPGM_N); TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: sli:Slin_5030 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; PRIAM: Acid phosphatase; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: Protein tyrosine phosphatase YP_004658000.1 PFAM: Low molecular weight phosphotyrosine protein phosphatase; KEGG: sli:Slin_5031 hypothetical protein; SPTR: uncharacterized protein YP_004658001.1 COGs: COG0148 Enolase; HAMAP: Enolase; InterPro IPR020811:IPR020810:IPR000941; KEGG: dfe:Dfer_4373 enolase; PFAM: Enolase, C-terminal; Enolase, N-terminal; PRIAM: Phosphopyruvate hydratase; SPTR: Enolase; TIGRFAM: Enolase YP_004658002.1 PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: dfe:Dfer_3140 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: LL-diaminopimelate aminotransferase; SPTR: Aminotransferase class I and II YP_004658003.1 PFAM: Aminotransferase class I and II; InterPro IPR008915; KEGG: sli:Slin_2710 peptidase M50; PFAM: Peptidase M50; SPTR: Peptidase M50 YP_004658004.1 PFAM: Peptidase M50; COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834:IPR006402:IPR006439; KEGG: dfe:Dfer_5618 HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1 YP_004658005.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; Epoxide hydrolase N-terminal domain-like phosphatase; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; COGs: COG0825 Acetyl-CoA carboxylase alpha subunit; HAMAP: Acetyl-CoA carboxylase, alpha subunit; InterPro IPR020582:IPR001095; KEGG: sli:Slin_2715 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region; PRIAM: Acetyl-CoA carboxylase; SPTR: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: Acetyl-CoA carboxylase, alpha subunit YP_004658006.1 PFAM: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR011108; KEGG: sli:Slin_2716 beta-lactamase; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: Beta-lactamase domain protein YP_004658007.1 PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain; COGs: COG1522 Transcriptional regulators; InterPro IPR019888:IPR019887; KEGG: dfe:Dfer_5148 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type; SPTR: Transcriptional regulator, AsnC family YP_004658008.1 PFAM: AsnC family; manually curated YP_004658011.1 PFAM: Galactokinase galactose-binding signature; GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: galactokinase; COGs: COG0578 Glycerol-3-phosphate dehydrogenase; InterPro IPR006076; KEGG: dfe:Dfer_2005 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; PRIAM: Glycerol-3-phosphate dehydrogenase; SPTR: FAD dependent oxidoreductase YP_004658012.1 PFAM: FAD dependent oxidoreductase; COGs: COG0393 conserved hypothetical protein; HAMAP: UPF0145 protein ybjQ; InterPro IPR002765; KEGG: sli:Slin_0329 hypothetical protein; PFAM: Uncharacterised protein family UPF0145; SPTR: UPF0145 protein Slin_0329 YP_004658013.1 PFAM: Domain of unknown function (DUF74); COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; KEGG: dfe:Dfer_4675 phosphoribosyltransferase; SPTR: Phosphoribosyltransferase YP_004658014.1 PFAM: Phosphoribosyl transferase domain; KEGG: sli:Slin_6183 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004658015.1 KEGG: sli:Slin_1183 hypothetical protein; SPTR: uncharacterized protein YP_004658016.1 COGs: COG2515 1-aminocyclopropane-1-carboxylate deaminase; KEGG: sli:Slin_1391 pyridoxal-5'-phosphate-dependent protein subunit beta; SPTR: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_004658017.1 PFAM: Pyridoxal-phosphate dependent enzyme; KEGG: sli:Slin_2301 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004658018.1 COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR000845:IPR011268:IPR011270; KEGG: sli:Slin_3943 purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: Nucleoside phosphorylase; PRIAM: Purine-nucleoside phosphorylase; SPTR: Purine nucleoside phosphorylase I, inosine and guanosine-specific; TIGRFAM: Purine nucleoside phosphorylase I, inosine/guanosine-specific; Inosine guanosine/xanthosine phosphorylase YP_004658019.1 PFAM: Phosphorylase superfamily; TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase; KEGG: dfe:Dfer_0226 hypothetical protein; SPTR: uncharacterized protein YP_004658020.1 PFAM: 3-carboxy-cis,cis-muconate lactonizing enzyme; HAMAP: Ribosomal protein S20; InterPro IPR002583; KEGG: dfe:Dfer_0225 30S ribosomal protein S20; PFAM: Ribosomal protein S20; SPTR: 30S ribosomal protein S20; TIGRFAM: Ribosomal protein S20 YP_004658021.1 PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20; COGs: COG4105 DNA uptake lipoprotein; InterPro IPR019734:IPR001440; KEGG: sli:Slin_2038 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein YP_004658022.1 KEGG: dfe:Dfer_1051 hypothetical protein; SPTR: uncharacterized protein YP_004658023.1 PFAM: TonB dependent receptor; InterPro IPR007730; KEGG: sli:Slin_2040 sporulation domain protein; PFAM: Sporulation/cell division region, bacteria; SPTR: Sporulation domain protein YP_004658024.1 KEGG: sli:Slin_1995 hypothetical protein; SPTR: uncharacterized protein YP_004658025.1 COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR013221:IPR004101:IPR001645; KEGG: psn:Pedsa_1924 FolC bifunctional protein; PFAM: Mur ligase, central; Mur ligase, C-terminal; PRIAM: Tetrahydrofolate synthase; SPTR: FolC bifunctional protein; TIGRFAM: Folylpolyglutamate synthetase YP_004658026.1 PFAM: Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase; COGs: COG0220 S-adenosylmethionine-dependent methyltransferase; HAMAP: tRNA (guanine-N(7)-)-methyltransferase; InterPro IPR003358; KEGG: sli:Slin_1997 tRNA (guanine-N(7)-)-methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase; PRIAM: tRNA (guanine-N(7)-)-methyltransferase; SPTR: tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N-7) methyltransferase YP_004658027.1 PFAM: methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterPro IPR020828:IPR020829:IPR006424; KEGG: cpi:Cpin_1397 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: Glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I YP_004658028.1 PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; COGs: COG2171 Tetrahydrodipicolinate N-succinyltransferase; InterPro IPR001451; KEGG: dfe:Dfer_1045 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; PRIAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; SPTR:2,3,4,5-tetrahydropyridine-2,6-dicarboxylateN- succinyltransferase YP_004658029.1 TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: sli:Slin_2000 XRE family transcriptional regulator; SPTR: Transcriptional regulator, XRE family YP_004658030.1 PFAM: Helix-turn-helix YP_004658031.1 InterPro IPR019734:IPR001440; KEGG: sli:Slin_2001 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: TPR repeat-containing protein YP_004658032.1 COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR002205:IPR006691:IPR005743; KEGG: dfe:Dfer_1029 DNA gyrase, A subunit; PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit A or C-terminal; SPTR: DNA gyrase, A subunit; TIGRFAM: DNA gyrase, subunit A YP_004658033.1 PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: DNA gyrase, A subunit YP_004658035.1 PFAM: Domain of Unknown Function (DUF349); COGs: COG0259 Pyridoxamine-phosphate oxidase; HAMAP: Pyridoxamine 5'-phosphate oxidase; InterPro IPR011576:IPR019576:IPR000659; KEGG: sli:Slin_2893 pyridoxamine 5'-phosphate oxidase; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal; PRIAM: Pyridoxal 5'-phosphate synthase; SPTR: Pyridoxine/pyridoxamine 5'-phosphate oxidase; TIGRFAM: Pyridoxamine 5'-phosphate oxidase YP_004658036.1 PFAM: Pyridoxamine 5'-phosphate oxidase; Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; TIGRFAM: pyridoxamine-phosphate oxidase; InterPro IPR002790:IPR002059; KEGG: cch:Cag_1985 cold shock protein; PFAM: Protein of unknown function DUF88; Cold-shock protein, DNA-binding; SPTR: Cold shock protein YP_004658037.1 PFAM: 'Cold-shock' DNA-binding domain; Protein of unknown function DUF88; COGs: COG2942 N-acyl-D-glucosamine 2-epimerase; InterPro IPR010819; KEGG: dfe:Dfer_1975 N-acylglucosamine 2-epimerase; PFAM: N-acylglucosamine 2-epimerase; SPTR: N-acylglucosamine 2-epimerase YP_004658038.1 PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); KEGG: dfe:Dfer_0200 hypothetical protein; SPTR: uncharacterized protein YP_004658039.1 PFAM: S1/P1 Nuclease; InterPro IPR013097; KEGG: sli:Slin_0525 stress responsive alpha-beta barrel domain protein; PFAM: Stress responsive alpha-beta barrel; SPTR: Stress responsive alpha-beta barrel domain protein YP_004658040.1 PFAM: Stress responsive A/B Barrel Domain; InterPro IPR018764; KEGG: sli:Slin_3072 anti-sigma-K factor RskA; PFAM: Anti-sigma K factor RskA; SPTR: Anti-sigma-K factor RskA YP_004658041.1 PFAM: Anti-sigma-K factor rskA; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_3071 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004658042.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1092 SAM-dependent methyltransferase; InterPro IPR002478; KEGG: sli:Slin_0528 methyltransferase; SMART: Pseudouridine synthase/archaeosine transglycosylase; SPTR: Methyltransferase YP_004658043.1 PFAM: S-adenosylmethionine-dependent methyltransferase; KEGG: sli:Slin_2007 HPr kinase; SPTR: HPr kinase YP_004658044.1 PFAM: HPr Serine kinase C-terminal domain YP_004658045.1 COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR000583:IPR001962; KEGG: srm:SRM_00271 asparagine synthetase B (glutamine-hydrolyzing); PFAM: Asparagine synthase; Glutamine amidotransferase, class-II; PRIAM: Asparagine synthase (glutamine-hydrolyzing); SPTR: Asparagine synthetase B (Glutamine-hydrolyzing) YP_004658046.1 PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307:IPR006311; KEGG: sli:Slin_0527 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004658047.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG2949 Uncharacterized membrane protein; InterPro IPR003848; KEGG: sli:Slin_2226 hypothetical protein; PFAM: Protein of unknown function DUF218; SPTR: uncharacterized protein YP_004658048.1 PFAM: DUF218 domain; COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR002205; KEGG: sli:Slin_2227 DNA topoisomerase (ATP-hydrolyzing); PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit A or C-terminal; SPTR: DNA topoisomerase (ATP-hydrolyzing) YP_004658049.1 PFAM: DNA gyrase/topoisomerase IV, subunit A; COGs: COG0408 Coproporphyrinogen III oxidase; InterPro IPR001260; KEGG: sli:Slin_2294 coproporphyrinogen oxidase; PFAM: Coproporphyrinogen III oxidase; PRIAM: Coproporphyrinogen oxidase; SPTR: Coproporphyrinogen oxidase YP_004658050.1 PFAM: Coproporphyrinogen III oxidase; COGs: COG4123 O-methyltransferase; InterPro IPR007848; KEGG: sli:Slin_2411 methyltransferase small; PFAM: Methyltransferase small; SPTR: Methyltransferase small YP_004658051.1 PFAM: Methyltransferase small domain; COGs: COG3341 double-stranded RNA/RNA-DNA hybrid binding protein; KEGG: dfe:Dfer_5118 ribonuclease H-related protein; SPTR: Ribonuclease H-related protein YP_004658052.1 PFAM: RNase H; Caulimovirus viroplasmin; KEGG: dfe:Dfer_5678 hypothetical protein; SPTR: uncharacterized protein YP_004658054.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: dfe:Dfer_2513 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein YP_004658055.1 PFAM: Response regulator receiver domain; COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); HAMAP: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; InterPro IPR003699; KEGG: dfe:Dfer_3300 queuosine biosynthesis protein; PFAM: Queuosine biosynthesis protein; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 2 YP_004658056.1 PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; KEGG: dfe:Dfer_3301 hypothetical protein; SPTR: uncharacterized protein YP_004658057.1 COGs: COG1530 Ribonuclease G and E; InterPro IPR003029:IPR019307:IPR004659; KEGG: dfe:Dfer_4433 ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain; SPTR: Ribonuclease, Rne/Rng family; TIGRFAM: Ribonuclease E/G YP_004658058.1 PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family; KEGG: pgn:PGN_1392 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004658059.1 KEGG: sli:Slin_5981 hypothetical protein; SPTR: uncharacterized protein YP_004658060.1 COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: sli:Slin_5982 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; SPTR: Histone family protein DNA-binding protein YP_004658061.1 PFAM: Bacterial DNA-binding protein; COGs: COG1194 A/G-specific DNA glycosylase; InterPro IPR003265:IPR003651:IPR005760; KEGG: sli:Slin_5983 A/G-specific adenine glycosylase; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; SMART: HhH-GPD domain; SPTR: A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form YP_004658062.1 PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: A/G-specific adenine glycosylase YP_004658063.1 COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424:IPR011344; KEGG: dfe:Dfer_4439 single-strand binding protein; PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding YP_004658064.1 PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb); InterPro IPR004360; KEGG: psl:Psta_2414 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004658065.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; HAMAP: Peptide methionine sulfoxide reductase msrB; InterPro IPR002579; KEGG: tel:tlr1214 methionine sulfoxide reductase B; PFAM: Methionine sulphoxide reductase B; PRIAM: Peptide-methionine (R)-S-oxide reductase; SPTR: Peptide methionine sulfoxide reductase MsrB; TIGRFAM: Methionine sulphoxide reductase B YP_004658066.1 PFAM: SelR domain; TIGRFAM: methionine-R-sulfoxide reductase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: ana:alr4456 tropinone reductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Tropinone reductase I; SPTR: Alr4456 protein YP_004658067.1 PFAM: short chain dehydrogenase; COGs: COG0738 Fucose permease; InterPro IPR011701:IPR005964; KEGG: dfe:Dfer_0466 glucose/galactose transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Glucose/galactose transporter; TIGRFAM: Bacterial glucose/galactose transporter YP_004658068.1 PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter; COGs: COG0153 Galactokinase; InterPro IPR006204:IPR013750; KEGG: dfe:Dfer_0465 GHMP kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal; SPTR: GHMP kinase YP_004658069.1 PFAM: Galactokinase galactose-binding signature; GHMP kinases C terminal; GHMP kinases N terminal domain YP_004658070.1 COGs: COG3424 naringenin-chalcone synthase; InterPro IPR001099:IPR012328; KEGG: sli:Slin_2532 chalcone and stilbene synthase domain protein; PFAM: Chalcone/stilbene synthase, N-terminal; Chalcone/stilbene synthase, C-terminal; PRIAM: Naringenin-chalcone synthase; SPTR: Naringenin-chalcone synthase YP_004658071.1 PFAM: Chalcone and stilbene synthases, N-terminal domain; Chalcone and stilbene synthases, C-terminal domain; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: bth:BT_2184 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70 YP_004658072.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004658073.1 COGs: COG0682 Prolipoprotein diacylglyceryltransferase; HAMAP: Prolipoprotein diacylglyceryl transferase; InterPro IPR001640; KEGG: dfe:Dfer_4316 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; SPTR: Prolipoprotein diacylglyceryl transferase; TIGRFAM: Prolipoprotein diacylglyceryl transferase YP_004658074.1 PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; InterPro IPR003675; KEGG: cps:CPS_2226 CAAX amino terminal protease; PFAM: Abortive infection protein; SPTR: CAAX amino terminal protease YP_004658075.1 PFAM: CAAX amino terminal protease; COGs: COG1501 Alpha-glucosidase 31 of glycosyl hydrolase; InterPro IPR000322; KEGG: ngr:NAEGRDRAFT_70656 hypothetical protein; PFAM: Glycoside hydrolase, family 31; SPTR: uncharacterized protein YP_004658076.1 PFAM: Glycosyl hydrolases family 31; COGs: COG0025 NhaP-type Na+/H+ and K+/H+ antiporter; InterPro IPR006153:IPR004705; KEGG: dfe:Dfer_2874 Na+/H+ antiporter; PFAM: Cation/H+ exchanger; SPTR: Na+/H+ antiporter; TIGRFAM: Na+/H+ exchanger, yjcE-like, bacteria YP_004658077.1 PFAM: Sodium/hydrogen exchanger family; TIGRFAM: Na+/H+ antiporter, bacterial form; KEGG: psn:Pedsa_1428 hypothetical protein; SPTR: uncharacterized protein YP_004658078.1 KEGG: sli:Slin_1923 hypothetical protein; SPTR: uncharacterized protein YP_004658079.1 COGs: COG0661 unusual protein kinase; InterPro IPR004147; KEGG: sli:Slin_1924 ABC transporter; PFAM: ABC-1; SPTR: ABC-1 domain protein YP_004658080.1 PFAM: Phosphotransferase enzyme family; ABC1 family; KEGG: sli:Slin_6335 hypothetical protein; SPTR: uncharacterized protein YP_004658081.1 KEGG: dfe:Dfer_0028 hypothetical protein; SPTR: uncharacterized protein YP_004658082.1 KEGG: dfe:Dfer_0029 hypothetical protein; SPTR: uncharacterized protein YP_004658083.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: sli:Slin_2250 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein YP_004658084.1 PFAM: alpha/beta hydrolase fold; KEGG: lby:Lbys_3413 glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004658085.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG3537 alpha-1 2-mannosidase; InterPro IPR012939:IPR005887; KEGG: dfe:Dfer_4742 alpha-1,2-mannosidase; PFAM: Glycosyl hydrolase 92; SPTR: Alpha-1,2-mannosidase; TIGRFAM: Alpha-1,2-mannosidase YP_004658086.1 PFAM: Glycosyl hydrolase 92; TIGRFAM: alpha-1,2-mannosidase YP_004658087.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: lby:Lbys_2868 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004658088.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: cpi:Cpin_5597 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS YP_004658089.1 PFAM: Histidine kinase; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119; KEGG: cpi:Cpin_6511 LysR family transcriptional regulator; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; SPTR: Transcriptional regulator, LysR family YP_004658090.1 PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; COGs: COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; InterPro IPR004839; KEGG: glo:Glov_2977 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Cystathionine beta-lyase; SPTR: Aminotransferase class I and II YP_004658091.1 PFAM: Aminotransferase class I and II; COGs: COG0439 Biotin carboxylase; KEGG: dfe:Dfer_2846 ATP-dependent carboxylate-amine ligase domain-containing protein; SPTR: ATP-dependent carboxylate-amine ligase domain-containing protein YP_004658092.1 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dfe:Dfer_2833 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004658093.1 PFAM: Predicted permease; InterPro IPR019854; KEGG: dfe:Dfer_0458 motility-like protein; SPTR: Motility-like protein; TIGRFAM: Gliding motility-associated protein, GldC YP_004658094.1 TIGRFAM: gliding motility-associated protein GldC; COGs: COG0002 Acetylglutamate semialdehyde dehydrogenase; HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase; InterPro IPR000534:IPR012280:IPR000706; KEGG: dfe:Dfer_4422 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding; Semialdehyde dehydrogenase, dimerisation region; PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase; SPTR: N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase YP_004658095.1 PFAM: Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, common form YP_004658096.1 KEGG: rbi:RB2501_08740 hypothetical protein; SPTR: uncharacterized protein YP_004658097.1 KEGG: sli:Slin_4954 TonB-dependent receptor plug; SPTR: uncharacterized protein YP_004658098.1 PFAM: PEGA domain; COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR009042:IPR007627:IPR007624:IPR007630:IPR 014284; KEGG: sli:Slin_1987 RNA polymerase, sigma 70 subunit, RpoD subfamily; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 3; SPTR: RNA polymerase, sigma 70 subunit, RpoD subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004658099.1 PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); HAMAP: Polyribonucleotide nucleotidyltransferase; InterProIPR012162:IPR001247:IPR015847:IPR015848:IPR 018111:IPR003029:IPR004087; KEGG: sli:Slin_1986 polyribonucleotide nucleotidyltransferase; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; Ribosomal protein S1, RNA binding domain; PRIAM: Polyribonucleotide nucleotidyltransferase; SPTR: Polyribonucleotide nucleotidyltransferase; TIGRFAM: Polyribonucleotide nucleotidyltransferase YP_004658100.1 PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease, domain 1; Polyribonucleotide nucleotidyltransferase, RNA binding domain; 3' exoribonuclease, domain 2; TIGRFAM: polyribonucleotide nucleotidyltransferase; COGs: COG0184 Ribosomal protein S15P/S13E; InterPro IPR000589:IPR005290; KEGG: chu:CHU_1787 30S ribosomal protein S15; PFAM: Ribosomal protein S15; SPTR: 30S ribosomal protein S15; TIGRFAM: Ribosomal protein S15, bacterial-type YP_004658101.1 PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle; COGs: COG0795 permease; InterPro IPR005495; KEGG: sli:Slin_1984 permease YjgP/YjgQ family protein; PFAM: Permease YjgP/YjgQ, predicted; SPTR: Permease YjgP/YjgQ family protein YP_004658102.1 PFAM: Predicted permease YjgP/YjgQ family; KEGG: sli:Slin_1983 hypothetical protein; SPTR: uncharacterized protein YP_004658104.1 KEGG: dfe:Dfer_1283 conserved hypothetical signal peptide protein; SPTR: Conserved hypothetical signal peptide protein YP_004658105.1 COGs: COG0159 Tryptophan synthase alpha chain; HAMAP: Tryptophan synthase, alpha chain; InterPro IPR002028; KEGG: dfe:Dfer_3798 tryptophan synthase, alpha subunit; PFAM: Tryptophan synthase, alpha chain; PRIAM: Tryptophan synthase; SPTR: Tryptophan synthase alpha chain; TIGRFAM: Tryptophan synthase, alpha chain YP_004658106.1 PFAM: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit; COGs: COG0242 N-formylmethionyl-tRNA deformylase; HAMAP: Formylmethionine deformylase; InterPro IPR000181; KEGG: sli:Slin_1786 formylmethionine deformylase; PFAM: Formylmethionine deformylase; SPTR: Peptide deformylase 1 YP_004658107.1 PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase; InterPro IPR003088:IPR013428:IPR013427; KEGG: dfe:Dfer_3707 membrane-bound dehydrogenase domain protein; PFAM: Cytochrome c, class I; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; haem-binding region YP_004658108.1 PFAM: Cytochrome c; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: sli:Slin_1107 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004658109.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: chu:CHU_1703 ferric uptake regulator protein; PFAM: Ferric-uptake regulator; SPTR: Ferric uptake regulator protein YP_004658110.1 PFAM: Ferric uptake regulator family YP_004658111.1 COGs: COG0369 Sulfite reductase alpha subunit (flavoprotein); InterPro IPR005625:IPR008254:IPR001433; KEGG: fjo:Fjoh_4069 flavodoxin/nitric oxide synthase; PFAM: Flavodoxin/nitric oxide synthase; PepSY-associated TM helix; Oxidoreductase FAD/NAD(P)-binding; SPTR: Oxidoreductase YP_004658112.1 PFAM: Flavodoxin; Oxidoreductase NAD-binding domain; PepSY-associated TM helix; KEGG: coc:Coch_1987 hypothetical protein; SPTR: uncharacterized protein YP_004658113.1 PFAM: Predicted periplasmic protein (DUF2271); InterPro IPR002110; KEGG: cly:Celly_2236 hypothetical protein; PFAM: Ankyrin repeat; SPTR: uncharacterized protein YP_004658114.1 PFAM: Ankyrin repeat; COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: zpr:ZPR_0955 thiamine biosynthesis lipoprotein; PFAM: ApbE-like lipoprotein; SPTR: Thiamine biosynthesis lipoprotein YP_004658115.1 PFAM: ApbE family; KEGG: fjo:Fjoh_4072 hypothetical protein; SPTR: Hypothetical lipoprotein YP_004658116.1 KEGG: dfe:Dfer_4310 hypothetical protein; SPTR: uncharacterized protein YP_004658117.1 COGs: COG3182 Uncharacterized iron-regulated membrane protein; InterPro IPR005625; KEGG: dfe:Dfer_4666 propeptide PepSY amd peptidase M4; SPTR: iron-regulated transmembrane protein YP_004658118.1 KEGG: cly:Celly_1197 hypothetical protein; SPTR: secreted protein YP_004658119.1 COGs: COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid; InterPro IPR012910:IPR000531:IPR010105; KEGG: sli:Slin_5755 TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor YP_004658120.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: lby:Lbys_1540 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor YP_004658121.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; KEGG: lby:Lbys_1541 hypothetical protein; SPTR: uncharacterized protein YP_004658122.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat; KEGG: sli:Slin_1320 hypothetical protein; SPTR: uncharacterized protein YP_004658123.1 COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362:IPR017475; KEGG: shg:Sph21_1796 undecaprenyl-phosphate glucose phosphotransferase; PFAM: Bacterial sugar transferase; SPTR: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase YP_004658124.1 PFAM: Bacterial sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: sli:Slin_6414 hypothetical protein; SPTR: uncharacterized protein YP_004658125.1 KEGG: sli:Slin_6415 hypothetical protein; SPTR: uncharacterized protein YP_004658126.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: geo:Geob_2923 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucuronate 4-epimerase; SPTR: NAD-dependent epimerase/dehydratase YP_004658127.1 PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: cts:Ctha_1806 family 2 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004658128.1 PFAM: Glycosyl transferase 2; COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; KEGG: sli:Slin_6418 glycosyl transferase 39; SPTR: Glycosyl transferase 39 YP_004658129.1 KEGG: sli:Slin_4562 hypothetical protein; SPTR: uncharacterized protein YP_004658130.1 KEGG: sli:Slin_4563 hypothetical protein; SPTR: uncharacterized protein YP_004658131.1 InterPro IPR018550; KEGG: sli:Slin_6416 hypothetical protein; PFAM: Lipid A 3-O-deacylase-related; SPTR: uncharacterized protein YP_004658132.1 PFAM: Lipid A 3-O-deacylase (PagL); KEGG: sli:Slin_6417 hypothetical protein; SPTR: uncharacterized protein YP_004658133.1 COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR005913; KEGG: dfe:Dfer_0045 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; PRIAM: dTDP-4-dehydrorhamnose reductase; SPTR: dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase YP_004658134.1 PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase; COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005835:IPR005907; KEGG: lby:Lbys_1314 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Glucose-1-phosphate thymidylyltransferase; SPTR: Glucose-1-phosphate thymidylyltransferase; TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form YP_004658135.1 PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form; COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR001509:IPR005888; KEGG: sli:Slin_5840 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: dTDP-glucose 4,6-dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase YP_004658136.1 PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: dfe:Dfer_2965 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related YP_004658137.1 PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; KEGG: nmu:Nmul_A0257 hypothetical protein; SPTR: uncharacterized protein YP_004658138.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: nmu:Nmul_A0256 oxidoreductase-like; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein YP_004658139.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; InterPro IPR015393:IPR001296; KEGG: sli:Slin_3145 hypothetical protein; PFAM: Protein of unknown function DUF1972; Glycosyl transferase, group 1; SPTR: uncharacterized protein YP_004658140.1 PFAM: Glycosyl transferases group 1; Domain of unknown function (DUF1972); COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: shl:Shal_1496 group 1 glycosyl transferase; PFAM: Glycosyl transferase, group 1; SPTR: uncharacterized protein YP_004658141.1 PFAM: Glycosyl transferases group 1; InterPro IPR001173; KEGG: brm:Bmur_0703 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase YP_004658142.1 PFAM: Glycosyl transferase 2; InterPro IPR001296; KEGG: lby:Lbys_3141 glycosyltransferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyltransferase YP_004658143.1 PFAM: Glycosyl transferases group 1; InterPro IPR001173; KEGG: bth:BT_0473 glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycoside transferase 2 YP_004658144.1 PFAM: Glycosyl transferase 2; KEGG: tbo:Thebr_1675 hypothetical protein; SPTR: membrane protein YP_004658145.1 PFAM: O-Antigen ligase; InterPro IPR002797; KEGG: shg:Sph21_1797 polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; SPTR: uncharacterized protein YP_004658146.1 PFAM: Polysaccharide biosynthesis protein; SPTR: uncharacterized protein YP_004658147.1 COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: bvi:Bcep1808_0814 hexapaptide repeat-containing transferase; SPTR: Bacterial transferase, hexapeptide repeat protein YP_004658148.1 PFAM: Bacterial transferase hexapeptide (three repeats) YP_004658149.1 COGs: COG2089 Sialic acid synthase; InterPro IPR013132; KEGG: hwa:HQ3519A sialic acid synthase (N-acetylneuraminate synthase) (N-acetylneuraminic acid synthase) (N-acetylneuraminate-9-phosphate synthase) (N-acetylneuraminic acid phosphate synthase); PFAM: N-acetylneuraminic acid synthase, N-terminal; PRIAM: N-acetylneuraminate synthase; SPTR: N-acylneuraminate-9-phosphate synthase YP_004658150.1 PFAM: NeuB family; COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase; InterPro IPR000760; KEGG: bvu:BVU_4035 inositol monophosphatase CysQ; PFAM: Inositol monophosphatase; SPTR: inositol monophosphatase CysQ YP_004658151.1 PFAM: Inositol monophosphatase; COGs: COG1083 CMP-N-acetylneuraminic acid synthetase; InterPro IPR003329; KEGG: pru:PRU_0447 hypothetical protein; PFAM: Acylneuraminate cytidylyltransferase; SPTR: Predicted protein YP_004658152.1 PFAM: Cytidylyltransferase; COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR003856:IPR005702; KEGG: sli:Slin_6307 capsular exopolysaccharide family; PFAM: Lipopolysaccharide biosynthesis; PRIAM: Non-specific protein-tyrosine kinase; SPTR: Capsular exopolysaccharide family; TIGRFAM: Exopolysaccharide synthesis protein YP_004658153.1 PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family; COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715:IPR019554; KEGG: sli:Slin_6308 ligand-binding protein; PFAM: Polysaccharide export protein; Soluble ligand binding domain; SPTR: Soluble ligand binding domain protein YP_004658154.1 PFAM: Polysaccharide biosynthesis/export protein YP_004658156.1 COGs: COG0499 S-adenosylhomocysteine hydrolase; HAMAP: Adenosylhomocysteinase; InterPro IPR000043:IPR015878; KEGG: sli:Slin_4338 adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; PRIAM: Adenosylhomocysteinase; SPTR: Adenosylhomocysteinase; TIGRFAM: S-adenosyl-L-homocysteine hydrolase YP_004658157.1 PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase; COGs: COG0192 S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthase; InterPro IPR002133; KEGG: lby:Lbys_1573 methionine adenosyltransferase; PFAM: S-adenosylmethionine synthetase; PRIAM: Methionine adenosyltransferase; SPTR: S-adenosylmethionine synthase; TIGRFAM: S-adenosylmethionine synthetase YP_004658158.1 PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, N-terminal domain; S-adenosylmethionine synthetase, central domain; TIGRFAM: S-adenosylmethionine synthetase; KEGG: sli:Slin_0577 hypothetical protein; SPTR: uncharacterized protein YP_004658159.1 SPTR: uncharacterized protein Lema_P075820.1 YP_004658160.1 COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: scl:sce5208 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein YP_004658161.1 PFAM: Protein of unknown function (DUF820) YP_004658162.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469:IPR001375; KEGG: dfe:Dfer_3655 peptidase S9B dipeptidylpeptidase IV domain protein; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; Peptidase S9, prolyl oligopeptidase, catalytic domain; PRIAM: Dipeptidyl-peptidase IV; SPTR: Peptidase S9B dipeptidylpeptidase IV domain protein YP_004658163.1 PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region; COGs: COG4783 Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: lby:Lbys_2280 peptidase M48 ste24p; PFAM: Peptidase M48, Ste24p; SPTR: Peptidase M48 Ste24p YP_004658164.1 PFAM: Peptidase M48; Prodigal; manually curated YP_004658165.1 COGs: COG0550 Topoisomerase IA; InterProIPR006171:IPR013497:IPR006154:IPR003601:IPR 003602:IPR005733; KEGG: sli:Slin_2030 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; SPTR: DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial-type YP_004658166.1 PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial; COGs: COG0412 Dienelactone hydrolase; InterPro IPR002925; KEGG: azl:AZL_021200 carboxymethylenebutenolidase; PFAM: Dienelactone hydrolase; PRIAM: Carboxymethylenebutenolidase; SPTR: Dienelactone hydrolase and related enzyme YP_004658167.1 PFAM: Dienelactone hydrolase; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3278 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor YP_004658168.1 KEGG: sli:Slin_2018 hypothetical protein; SPTR: uncharacterized protein YP_004658169.1 InterPro IPR010496; KEGG: sli:Slin_1177 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein YP_004658170.1 PFAM: Domain of Unknown Function (DUF1080) YP_004658171.1 KEGG: sli:Slin_0230 hypothetical protein; SPTR: uncharacterized protein YP_004658172.1 InterPro IPR011138; KEGG: lby:Lbys_2049 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; SPTR: Succinate dehydrogenase (Or fumarate reductase) cytochrome b subunit, b558 family; TIGRFAM: Succinate dehydrogenase, cytochrome b558 subunit YP_004658173.1 TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR003953:IPR004112:IPR011280; KEGG: dfe:Dfer_3970 succinate dehydrogenase flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; PRIAM: Succinate dehydrogenase; SPTR: Succinate dehydrogenase or fumarate reductase, flavoprotein subunit; TIGRFAM: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit, low-GC Gram-positive bacteria YP_004658174.1 PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup; COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterPro IPR001041:IPR004489; KEGG: phe:Phep_0212 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; PFAM: Ferredoxin; SPTR: Succinate dehydrogenase/fumarate reductase iron-sulfur; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein YP_004658175.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_004658177.1 KEGG: dfe:Dfer_2156 hypothetical protein; SPTR: uncharacterized protein YP_004658178.1 COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: dfe:Dfer_1823 beta-Ig-H3/fasciclin; PFAM: FAS1 domain; SMART: FAS1 domain; SPTR: Beta-Ig-H3/fasciclin YP_004658179.1 PFAM: Fasciclin domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: dfe:Dfer_5311 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: two-component sensor histidine kinase transcriptional regulator YP_004658180.1 PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: mtt:Ftrac_3670 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two-component system response regulator YP_004658181.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; KEGG: sli:Slin_5315 hypothetical protein; SPTR: uncharacterized protein YP_004658182.1 SPTR: uncharacterized protein YP_004658183.1 PFAM: Trehalose utilisation; KEGG: sur:STAUR_0232 hypothetical protein; SPTR: Uncharacterized protein YP_004658184.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: dfe:Dfer_2640 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004658185.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: cpi:Cpin_6533 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004658186.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: sli:Slin_5816 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein YP_004658187.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG1735 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR001559; KEGG: ace:Acel_0570 aryldialkylphosphatase; PFAM: Aryldialkylphosphatase; SPTR: Aryldialkylphosphatase YP_004658188.1 PFAM: Phosphotriesterase; InterPro IPR003953; KEGG: ace:Acel_0569 fumarate reductase/succinate dehydrogenase flavoprotein; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; SPTR: Fumarate reductase/succinate dehydrogenase flavoprotein YP_004658189.1 PFAM: FAD dependent oxidoreductase; COGs: COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain; KEGG: sli:Slin_2645 hypothetical protein; SPTR: uncharacterized protein YP_004658190.1 COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: sli:Slin_2646 ROK family protein; PFAM: ROK; SPTR: ROK family protein YP_004658191.1 PFAM: ROK family; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_5818 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004658192.1 PFAM: short chain dehydrogenase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: sli:Slin_4971 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: transcriptional activator MltR YP_004658193.1 PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG0383 Alpha-mannosidase; InterPro IPR011682; KEGG: bth:BT_2113 hypothetical protein; PFAM: Glycosyl hydrolases 38, C-terminal; SPTR: Glycosyl hydrolases 38-like protein YP_004658194.1 PFAM: Glycosyl hydrolases family 38 C-terminal domain; COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; KEGG: aba:Acid345_0004 glutamine-fructose-6-phosphate transaminase (isomerizing); SPTR: Glutamine-fructose-6-phosphate transaminase (Isomerizing) YP_004658195.1 InterPro IPR000620; KEGG: dfe:Dfer_1709 protein of unknown function DUF6 transmembrane; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: Integral membrane protein YP_004658196.1 PFAM: EamA-like transporter family; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: fno:Fnod_0088 ROK family protein; PFAM: ROK; PRIAM: Glucokinase; SPTR: ROK family protein YP_004658197.1 PFAM: ROK family YP_004658198.1 KEGG: sli:Slin_5503 hypothetical protein; SPTR: uncharacterized protein YP_004658199.1 PFAM: Domain of unknown function (DUF1083); COGs: COG2311 membrane protein; KEGG: bcb:BCB4264_A2187 hypothetical protein; SPTR: Hypothetical Membrane Spanning Protein YP_004658200.1 PFAM: Protein of unknown function (DUF1624); Protein of unknown function (DUF418); Prodigal; manually curated YP_004658201.1 KEGG: sli:Slin_2647 integral membrane protein; sugar permease; SPTR: integral membrane protein; sugar permease YP_004658202.1 PFAM: Fatty acid elongase 3-ketoacyl-CoA synthase 1; InterPro IPR005502; KEGG: sli:Slin_2648 ADP-ribosylation/crystallin J1; PFAM: ADP-ribosylation/Crystallin J1; SPTR: ADP-ribosylation/Crystallin J1 YP_004658203.1 PFAM: ADP-ribosylglycohydrolase; COGs: COG0524 Sugar kinase ribokinase; InterPro IPR011611:IPR011877; KEGG: sli:Slin_2649 ribokinase; PFAM: Carbohydrate/purine kinase; PRIAM: Ribokinase; SPTR: Ribokinase; TIGRFAM: Ribokinase, bacterial YP_004658204.1 PFAM: pfkB family carbohydrate kinase; TIGRFAM: ribokinase; KEGG: lby:Lbys_0370 hypothetical protein; SPTR: uncharacterized protein YP_004658205.1 manually curated YP_004658206.1 manually curated YP_004658207.1 InterPro IPR010496; KEGG: fbc:FB2170_00670 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein YP_004658208.1 PFAM: Domain of Unknown Function (DUF1080); COGs: COG1414 Transcriptional regulator; InterPro IPR005471:IPR014757; KEGG: psn:Pedsa_0488 transcriptional regulator, IclR family; PFAM: Transcriptional regulator IclR, N-terminal; Transcriptional regulator IclR, C-terminal; SMART: Transcriptional regulator IclR, N-terminal; SPTR: uncharacterized protein YP_004658209.1 PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator YP_004658210.1 COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154:IPR013149; KEGG: bcl:ABC0438 Zn-dependent alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; PRIAM: D-xylulose reductase; SPTR: Zn-dependent alcohol dehydrogenase YP_004658211.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: psn:Pedsa_2182 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 2-deoxy-D-gluconate 3-dehydrogenase; SPTR: 2-deoxy-D-gluconate 3-dehydrogenase YP_004658212.1 PFAM: short chain dehydrogenase; TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_2262 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein YP_004658213.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_2261 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: uncharacterized protein YP_004658214.1 PFAM: SusD family; InterPro IPR000514; KEGG: cti:RALTA_A1239 hypothetical protein; PFAM: Glycoside hydrolase, family 39; SPTR: uncharacterized protein YP_004658215.1 PFAM: Glycosyl hydrolases family 39; COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: aex:Astex_3594 glycosyl hydrolase 88; PFAM: Glycosyl hydrolase, family 88; SPTR: Unsaturated glucuronyl hydrolase involved in regulation of surface properties-like protein YP_004658216.1 PFAM: Glycosyl Hydrolase 88; KEGG: gpb:HDN1F_14410 hypothetical protein; SPTR: uncharacterized protein YP_004658217.1 PFAM: Glycosyl hydrolases family 39; KEGG: cti:RALTA_A1239 hypothetical protein; SPTR: uncharacterized protein YP_004658218.1 PFAM: Glycosyl hydrolases family 39; InterPro IPR011459:IPR006626; KEGG: chu:CHU_0455 pectate lyase-like protein; PFAM: Protein of unknown function DUF1565; SPTR: Pectate lyase-related protein YP_004658219.1 TIGRFAM: parallel beta-helix repeat (two copies); COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: ddc:Dd586_3323 glycosyl hydrolase 88; PFAM: Glycosyl hydrolase, family 88; SPTR: Unsaturated glucuronyl hydrolase involved in regulation of surface properties-like protein YP_004658220.1 PFAM: Glycosyl Hydrolase 88; COGs: COG0591 Na+/proline symporter; InterPro IPR001734:IPR019900; KEGG: cpi:Cpin_3541 Na+/solute symporter; PFAM: Sodium/solute symporter; SPTR: uncharacterized protein; TIGRFAM: Sodium/solute symporter, subgroup YP_004658221.1 PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: cli:Clim_2374 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short chain dehydrogenase YP_004658222.1 PFAM: short chain dehydrogenase; COGs: COG0684 Demethylmenaquinone methyltransferase; KEGG: caa:Caka_0515 dimethylmenaquinone methyltransferase; SPTR: Demethylmenaquinone methyltransferase-like protein YP_004658223.1 PFAM: Demethylmenaquinone methyltransferase; SPTR: uncharacterized protein YP_004658224.1 PFAM: Heparinase II/III-like protein; InterPro IPR004360; KEGG: sus:Acid_1152 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004658225.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154:IPR013149; KEGG: cao:Celal_2520 L-threonine 3-dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; PRIAM: L-iditol 2-dehydrogenase; SPTR: L-threonine 3-dehydrogenase YP_004658226.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase; KEGG: cly:Celly_3120 hypothetical protein; SPTR: uncharacterized protein YP_004658227.1 COGs: COG5587 conserved hypothetical protein; InterPro IPR012808; KEGG: sli:Slin_2331 hypothetical protein; PFAM: Conserved hypothetical protein CHP02453; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02453 YP_004658228.1 PFAM: Conserved hypothetical protein (DUF2461); TIGRFAM: TIGR02453 family protein; COGs: COG0180 Tryptophanyl-tRNA synthetase; InterPro IPR002305:IPR002306; KEGG: lby:Lbys_0317 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; PRIAM: Tryptophan--tRNA ligase; SPTR: Tryptophanyl-tRNA synthetase; TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib YP_004658229.1 PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase; InterPro IPR000326; KEGG: sli:Slin_2918 phosphoesterase PA-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: Phosphoesterase PA-phosphatase related protein YP_004658230.1 PFAM: PAP2 superfamily; COGs: COG0462 Phosphoribosylpyrophosphate synthetase; InterPro IPR000836:IPR005946; KEGG: dfe:Dfer_0421 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase; PRIAM: Ribose-phosphate diphosphokinase; SPTR: Ribose-phosphate pyrophosphokinase; TIGRFAM: Phosphoribosyl pyrophosphokinase YP_004658231.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase; HAMAP: Ribosomal protein L25; InterPro IPR001021:IPR020055; KEGG: dfe:Dfer_0420 50S ribosomal protein L25/general stress protein Ctc; PFAM: Ribosomal protein L25, N-terminal; SPTR: 50S ribosomal protein L25; TIGRFAM: Ribosomal protein L25 YP_004658232.1 PFAM: Ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form; COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR013766:IPR005746; KEGG: dfe:Dfer_0428 thioredoxin; PFAM: Thioredoxin domain; SPTR: Thioredoxin; TIGRFAM: Thioredoxin YP_004658233.1 PFAM: Thioredoxin; TIGRFAM: thioredoxin; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: dsh:Dshi_0676 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: beta-lactamase YP_004658234.1 PFAM: Beta-lactamase; COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA dimethylallyltransferase; InterPro IPR002627:IPR018022; KEGG: dfe:Dfer_0552 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: tRNA dimethylallyltransferase 1; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase YP_004658235.1 PFAM: IPP transferase; TIGRFAM: tRNA dimethylallyltransferase; KEGG: dfe:Dfer_0551 hypothetical protein; SPTR: uncharacterized protein YP_004658236.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_5818 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004658237.1 PFAM: short chain dehydrogenase; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: sli:Slin_2646 ROK family protein; PFAM: ROK; PRIAM: N-acylmannosamine kinase; SPTR: ROK family protein YP_004658238.1 PFAM: ROK family; COGs: COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain; KEGG: sli:Slin_2645 hypothetical protein; SPTR: uncharacterized protein YP_004658239.1 COGs: COG1247 Sortase and related acyltransferase; InterPro IPR000182; KEGG: bgl:bglu_2g20880 histone acetyltransferase HPA11; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase YP_004658240.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG0620 Methionine synthase II (cobalamin-independent); InterPro IPR002629; KEGG: sli:Slin_5820 methionine synthase vitamin-B12 independent; PFAM: Methionine synthase, vitamin-B12 independent; SPTR: Methionine synthase vitamin-B12 independent YP_004658241.1 PFAM: Cobalamin-independent synthase, Catalytic domain; KEGG: sli:Slin_1321 hypothetical protein; SPTR: uncharacterized protein YP_004658242.1 InterPro IPR011445:IPR011933; KEGG: sli:Slin_1322 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Double-transmembrane region, N-terminal YP_004658243.1 PFAM: Aerotolerance regulator N-terminal; TIGRFAM: N-terminal double-transmembrane domain; COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: sli:Slin_1323 hypothetical protein; PFAM: Protein of unknown function DUF58; SPTR: uncharacterized protein YP_004658244.1 PFAM: Protein of unknown function DUF58; Prodigal; manually curated YP_004658245.1 PFAM: ATPase associated with various cellular activities (AAA); KEGG: sli:Slin_1325 hypothetical protein; SPTR: uncharacterized protein YP_004658246.1 manually curated YP_004658247.1 PFAM: modulator of DNA gyrase; COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510:IPR006311; KEGG: lby:Lbys_3468 peptidase U62 modulator of DNA gyrase; PFAM: Peptidase U62, modulator of DNA gyrase; SPTR: Peptidase U62 modulator of DNA gyrase YP_004658248.1 PFAM: modulator of DNA gyrase; COGs: COG2068 Uncharacterized MobA-related protein; InterPro IPR001228; KEGG: sli:Slin_1745 hypothetical protein; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: uncharacterized protein YP_004658249.1 PFAM: Uncharacterized protein family UPF0007 YP_004658252.1 PFAM: OmpA family; PPIC-type PPIASE domain; InterPro IPR015391:IPR000297; KEGG: sli:Slin_0806 PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SurA N-terminal; SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase YP_004658253.1 PFAM: SurA N-terminal domain; PPIC-type PPIASE domain; COGs: COG0714 MoxR-like ATPase; InterPro IPR011703; KEGG: sli:Slin_0805 ATPase AAA; PFAM: ATPase associated with various cellular activities, AAA-3; SPTR: ATPase associated with various cellular activities AAA_3 YP_004658254.1 PFAM: ATPase associated with various cellular activities (AAA); COGs: COG0281 Malic enzyme; InterPro IPR012301:IPR012302:IPR002505; KEGG: dfe:Dfer_0248 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))., phosphate acetyltransferase; PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; Phosphate acetyl/butaryl transferase; SPTR: Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP(+))., Phosphate acetyltransferase YP_004658255.1 PFAM: Phosphate acetyl/butaryl transferase; Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain; TIGRFAM: phosphate acetyltransferase; COGs: COG0196 FAD synthase; InterPro IPR015864:IPR015865:IPR002606; KEGG: dfe:Dfer_1247 riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; PRIAM: FAD synthetase., Riboflavin kinase; SPTR: Riboflavin biosynthesis protein RibF; TIGRFAM: Riboflavin kinase/FAD synthetase YP_004658258.1 PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP; KEGG: sli:Slin_0787 hypothetical protein; SPTR: uncharacterized protein YP_004658259.1 PFAM: Protein of unknown function (DUF3098); COGs: COG2177 Cell division protein; InterPro IPR003838; KEGG: dfe:Dfer_1243 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004658260.1 PFAM: Predicted permease; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076:IPR000172; KEGG: sli:Slin_5806 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase YP_004658261.1 PFAM: GMC oxidoreductase; KEGG: sli:Slin_5805 hypothetical protein; SPTR: uncharacterized protein YP_004658262.1 COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: sli:Slin_1591 glucose/sorbosone dehydrogenase; SPTR: Glucose/sorbosone dehydrogenase-like protein YP_004658263.1 PFAM: Glucose / Sorbosone dehydrogenase; InterPro IPR002059:IPR011129; KEGG: sli:Slin_4054 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding domain protein YP_004658264.1 PFAM: 'Cold-shock' DNA-binding domain YP_004658265.1 COGs: COG1896 hydrolase of HD superfamily; InterPro IPR006674; KEGG: cpi:Cpin_3043 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SPTR: Metal dependent phosphohydrolase YP_004658266.1 KEGG: sli:Slin_2213 hypothetical protein; SPTR: uncharacterized protein YP_004658267.1 PFAM: Protein of unknown function (DUF2568); KEGG: dfe:Dfer_4107 hypothetical protein; SPTR: uncharacterized protein YP_004658268.1 KEGG: sli:Slin_3515 hypothetical protein; SPTR: uncharacterized protein YP_004658269.1 PFAM: Protein of unknown function (DUF3037); KEGG: cpi:Cpin_6310 hypothetical protein; SPTR: uncharacterized protein YP_004658270.1 InterPro IPR001440:IPR019734; KEGG: sli:Slin_1363 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: TPR repeat-containing protein YP_004658271.1 KEGG: sli:Slin_5342 hypothetical protein; SPTR: uncharacterized protein YP_004658274.1 manually curated YP_004658275.1 COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: reh:H16_B0832 2-phosphonopropionate transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Phosphonate metabolism protein PhnB YP_004658276.1 PFAM: Major Facilitator Superfamily; COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154:IPR013149; KEGG: psl:Psta_3166 phosphonate catabolism associated alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; SPTR: Alcohol dehydrogenase; manually curated YP_004658277.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: phosphonate catabolism associated alcohol dehydrogenase; COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: dfe:Dfer_3144 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family YP_004658278.1 PFAM: GDSL-like Lipase/Acylhydrolase; COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR007527:IPR000330:IPR001650:IPR014001; KEGG: dfe:Dfer_3874 non-specific serine/threonine protein kinase; PFAM: SNF2-related; Zinc finger, SWIM-type; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Non-specific serine/threonine protein kinase YP_004658279.1 PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain; SWIM zinc finger YP_004658280.1 KEGG: sli:Slin_2429 hypothetical protein; SPTR: uncharacterized protein YP_004658281.1 InterPro IPR010496; KEGG: dfe:Dfer_1970 protein of unknown function DUF1080; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein YP_004658282.1 PFAM: Domain of Unknown Function (DUF1080); KEGG: amd:AMED_6200 hypothetical protein; SPTR: uncharacterized protein YP_004658283.1 KEGG: dfe:Dfer_5392 hypothetical protein; SPTR: uncharacterized protein YP_004658284.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2236); KEGG: psn:Pedsa_0396 hypothetical protein; SPTR: uncharacterized protein YP_004658285.1 PFAM: Protein of unknown function (DUF2809); COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_2699 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor YP_004658286.1 COGs: COG2860 membrane protein; InterPro IPR005115; KEGG: lbf:LBF_2554 hypothetical protein; PFAM: Uncharacterised protein family UPF0126; SPTR: uncharacterized protein YP_004658287.1 PFAM: UPF0126 domain; COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: ppn:Palpr_0120 bile acid:sodium symporter; PFAM: Bile acid:sodium symporter; SPTR: Bile acid:sodium symporter YP_004658288.1 PFAM: Sodium Bile acid symporter family; COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: mtt:Ftrac_2184 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase YP_004658289.1 PFAM: Acyltransferase; Prodigal; manually curated YP_004658290.1 PFAM: FdhD/NarQ family; TIGRFAM: formate dehydrogenase accessory protein FdhD; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_5310 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: uncharacterized protein YP_004658291.1 PFAM: TonB-dependent Receptor Plug Domain; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR008030; KEGG: lth:KLTH0E10032g KLTH0E10032p; SPTR: KLTH0E10032p YP_004658292.1 PFAM: NmrA-like family; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: dfe:Dfer_5311 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS YP_004658293.1 PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_5312 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004658294.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060; KEGG: ral:Rumal_2538 AraC family transcriptional regulator; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004658295.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: sli:Slin_0986 hypothetical protein; SPTR: uncharacterized protein YP_004658296.1 COGs: COG0234 Co-chaperonin GroES (HSP10); HAMAP: Chaperonin Cpn10, subgroup; InterPro IPR001476:IPR020818; KEGG: lby:Lbys_1302 chaperonin cpn10; PFAM: Chaperonin Cpn10; SPTR: 10 kDa chaperonin YP_004658297.1 PFAM: Chaperonin 10 Kd subunit; COGs: COG0459 Chaperonin GroEL (HSP60 family); HAMAP: 60 kDa chaperonin; InterPro IPR002423:IPR001844; KEGG: sli:Slin_0984 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1; SPTR: 60 kDa chaperonin; TIGRFAM: Chaperonin Cpn60 YP_004658298.1 PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL; COGs: COG0466 ATP-dependent Lon protease; InterProIPR003111:IPR003959:IPR008269:IPR003593:IPR 004815; KEGG: dfe:Dfer_4129 ATP-dependent protease La; PFAM: Peptidase S16, lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core; PRIAM: Endopeptidase La; SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; SPTR: ATP-dependent protease La; TIGRFAM: Peptidase S16, ATP-dependent protease La YP_004658299.1 PFAM: ATP-dependent protease La (LON) domain; ATPase associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: dfe:Dfer_2723 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Aspartate transaminase; SPTR: Aminotransferase class I and II YP_004658300.1 PFAM: Aminotransferase class I and II; KEGG: dfe:Dfer_4253 hypothetical protein; SPTR: uncharacterized protein YP_004658301.1 KEGG: dfe:Dfer_2593 hypothetical protein; SPTR: uncharacterized protein YP_004658302.1 COGs: COG2715 Uncharacterized membrane protein required for spore maturation in B.subtilis.; InterPro IPR011642; KEGG: sli:Slin_4460 nucleoside recognition domain protein; PFAM: Nucleoside recognition; SPTR: Nucleoside recognition domain protein YP_004658303.1 PFAM: Nucleoside recognition; COGs: COG0698 Ribose 5-phosphate isomerase RpiB; InterPro IPR003500:IPR004785; KEGG: dfe:Dfer_4874 sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; PRIAM: Ribose-5-phosphate isomerase; SPTR: Sugar-phosphate isomerase, RpiB/LacA/LacB family; TIGRFAM: Ribose/galactose isomerase; Ribose 5-phosphate isomerase B YP_004658304.1 PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family; COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: dfe:Dfer_4873 hypothetical protein; PFAM: Conserved hypothetical protein CHP00730; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00730 YP_004658305.1 PFAM: Possible lysine decarboxylase; TIGRFAM: TIGR00725 family protein; TIGR00730 family protein; InterPro IPR011576; KEGG: npu:Npun_R6336 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; SPTR: Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein YP_004658306.1 PFAM: Pyridoxamine 5'-phosphate oxidase; SPTR: Transposase IS4 family protein YP_004658307.1 COGs: COG2272 Carboxylesterase type B; InterPro IPR002018:IPR006311; KEGG: sli:Slin_4016 carboxylesterase type B; PFAM: Carboxylesterase, type B; SPTR: Carboxylesterase type B YP_004658308.1 PFAM: Carboxylesterase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; KEGG: sli:Slin_5108 hypothetical protein; SPTR: uncharacterized protein YP_004658309.1 COGs: COG4628 conserved hypothetical protein; InterPro IPR018668; KEGG: eta:ETA_07750 hypothetical protein; PFAM: Protein of unknown function DUF2132; SPTR: uncharacterized protein YP_004658310.1 PFAM: Uncharacterized conserved protein (DUF2132); COGs: COG1785 Alkaline phosphatase; InterPro IPR004129:IPR001952; KEGG: cpi:Cpin_0006 alkaline phosphatase; PFAM: Alkaline phosphatase; Glycerophosphoryl diester phosphodiesterase; SMART: Alkaline phosphatase; SPTR: Alkaline phosphatase YP_004658311.1 PFAM: Alkaline phosphatase; KEGG: dfe:Dfer_5078 hypothetical protein; SPTR: uncharacterized protein YP_004658312.1 TIGRFAM: integral membrane protein; COGs: COG1929 Glycerate kinase; InterPro IPR004381; KEGG: sli:Slin_1926 glycerate kinase; PFAM: Glycerate kinase; PRIAM: Glycerate kinase; SPTR: Glycerate kinase; TIGRFAM: Glycerate kinase YP_004658313.1 PFAM: Glycerate kinase; TIGRFAM: glycerate kinase; COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR001264:IPR001460; KEGG: dfe:Dfer_5029 glycosyl transferase 51; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Glycosyl transferase 51 YP_004658314.1 PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; InterPro IPR019734; KEGG: dfe:Dfer_5028 TPR repeat-containing protein; SPTR: TPR repeat-containing protein YP_004658315.1 InterPro IPR013216; KEGG: gau:GAU_3119 methyltransferase; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11 YP_004658316.1 PFAM: Methyltransferase domain; KEGG: sli:Slin_1752 hypothetical protein; SPTR: uncharacterized protein YP_004658317.1 PFAM: Protein of unknown function (DUF2452); manually curated YP_004658318.1 KEGG: dfe:Dfer_2647 hypothetical protein; SPTR: uncharacterized protein YP_004658319.1 KEGG: dfe:Dfer_2626 hypothetical protein; SPTR: uncharacterized protein YP_004658320.1 KEGG: dfe:Dfer_2628 hypothetical protein; SPTR: uncharacterized protein YP_004658321.1 COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839; KEGG: dfe:Dfer_2627 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Histidinol-phosphate transaminase; SPTR: Aminotransferase class I and II YP_004658322.1 PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; KEGG: dfe:Dfer_2625 hypothetical protein; SPTR: uncharacterized protein YP_004658323.1 COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_2624 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004658324.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839:IPR006311; KEGG: sli:Slin_3478 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Histidinol-phosphate transaminase; SPTR: Aminotransferase class I and II YP_004658325.1 PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; KEGG: sli:Slin_6127 Hedgehog/intein hint domain protein; SPTR: Hedgehog/intein hint domain protein YP_004658326.1 InterPro IPR000297; KEGG: dfe:Dfer_4724 PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase YP_004658327.1 PFAM: PPIC-type PPIASE domain; InterPro IPR005181; KEGG: sli:Slin_5096 hypothetical protein; PFAM: Protein of unknown function DUF303, acetylesterase SPTR: uncharacterized protein YP_004658328.1 PFAM: Domain of unknown function (DUF303); KEGG: mba:Mbar_A0126 hypothetical protein; SPTR: uncharacterized protein YP_004658329.1 COGs: COG4242 Cyanophycinase and related exopeptidase; KEGG: sli:Slin_4208 cyanophycinase-like protein; SPTR: Cyanophycinase-like protein YP_004658330.1 PFAM: Peptidase S51; TIGRFAM: cyanophycinase; COGs: COG1864 DNA/RNA endonuclease G NUC1; InterPro IPR001604:IPR020821; KEGG: ava:Ava_B0336 DNA/RNA non-specific endonuclease; PFAM: DNA/RNA non-specific endonuclease; SMART: Extracellular Endonuclease, subunit A; SPTR: DNA/RNA non-specific endonuclease YP_004658331.1 PFAM: DNA/RNA non-specific endonuclease; COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: dfe:Dfer_1262 protein of unknown function UPF0047; PFAM: Uncharacterised protein family UPF0047; SPTR: uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0047 YP_004658332.1 PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme; KEGG: dmr:Deima_1581 hypothetical protein; SPTR: uncharacterized protein YP_004658334.1 InterPro IPR001387; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004658335.1 PFAM: Helix-turn-helix; KEGG: sli:Slin_3285 hypothetical protein; SPTR: uncharacterized protein YP_004658336.1 KEGG: sli:Slin_3094 hypothetical protein; SPTR: uncharacterized protein YP_004658337.1 COGs: COG3378 ATPase; InterPro IPR014818:IPR006500; KEGG: sli:Slin_3095 P4 family phage/plasmid primase; PFAM: Phage/plasmid primase, P4, C-terminal; SPTR: Phage/plasmid primase, P4 family; TIGRFAM: DNA primase, phage/plasmid YP_004658338.1 PFAM: D5 N terminal like; TIGRFAM: phage/plasmid primase, P4 family, C-terminal domain YP_004658339.1 KEGG: cat:CA2559_03950 hypothetical protein; SPTR: uncharacterized protein YP_004658340.1 KEGG: sli:Slin_3282 hypothetical protein; SPTR: uncharacterized protein YP_004658341.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: sli:Slin_3281 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Mobilizable transposon, int protein YP_004658342.1 PFAM: Phage integrase; InterPro IPR010093; KEGG: pdi:BDI_2123 transposase in mobilizable transposon, TnpA protein; SPTR: Transposase in mobilizable transposon, tnpA protein; TIGRFAM: Excisionase/Xis, DNA-binding YP_004658343.1 TIGRFAM: DNA binding domain, excisionase; COGs: COG0486 GTPase; HAMAP: tRNA modification GTPase TrmE; InterPro IPR004520:IPR018948:IPR002917:IPR005225; KEGG: dfe:Dfer_0089 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related; SPTR: tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein YP_004658344.1 PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: small GTP-binding protein domain; tRNA modification GTPase TrmE; KEGG: lby:Lbys_2700 hypothetical protein; SPTR: uncharacterized protein YP_004658345.1 KEGG: sli:Slin_1630 hypothetical protein; SPTR: uncharacterized protein YP_004658346.1 KEGG: dfe:Dfer_0082 LVIVD repeat protein; SPTR: LVIVD repeat protein YP_004658347.1 KEGG: dfe:Dfer_0081 LVIVD repeat protein; SPTR: LVIVD repeat protein YP_004658348.1 InterPro IPR004843; KEGG: dfe:Dfer_4802 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase YP_004658349.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_2542 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein; manually curated YP_004658350.1 PFAM: WD40-like Beta Propeller Repeat; OmpA family; KEGG: rhi:NGR_b13550 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004658351.1 COGs: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase beta subunit; InterPro IPR011766; KEGG: gpb:HDN1F_09560 2-ketoglutarate: NADP oxidoreductase, beta subunit; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: 2-oxoglutarate synthase; SPTR: 2-ketoglutarate: NADP oxidoreductase, beta subunit YP_004658352.1 PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: cch:Cag_1441 hypothetical protein; PFAM: Filamentation induced by cAMP/death on curing, related; SPTR: uncharacterized protein YP_004658353.1 PFAM: Fic/DOC family YP_004658354.1 COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR019752:IPR002880; KEGG: gpb:HDN1F_09550 2-ketoglutarate: nadp oxidoreductase, alpha subunit; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase; PRIAM: 2-oxoglutarate synthase; SPTR: 2-ketoglutarate: nadp oxidoreductase, alpha subunit; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, alpha subunit YP_004658355.1 PFAM: domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, alpha subunit; COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR013027:IPR001450; KEGG: gpb:HDN1F_09540 2-ketoglutarate: NADP oxidoreductase, gamma subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; PRIAM: Glutamate synthase (NADPH); SPTR: 4Fe-4S binding domain protein YP_004658356.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG2273 Beta-glucanase/Beta-glucan synthetase; InterPro IPR004129:IPR000757; KEGG: cly:Celly_2438 licheninase; PFAM: Glycoside hydrolase, family 16; Glycerophosphoryl diester phosphodiesterase; PRIAM: Licheninase; SPTR: Glycoside hydrolase 16 YP_004658357.1 PFAM: Glycerophosphoryl diester phosphodiesterase; Glycosyl hydrolases family 16; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: lby:Lbys_2250 RNA polymerase, sigma-24 subunit, ecf subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004658358.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: lby:Lbys_2249 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR YP_004658359.1 PFAM: FecR protein; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1791 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004658360.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: zpr:ZPR_0682 outer hypothetical protein, probably involved in nutrient binding; PFAM: RagB/SusD; SPTR: outer membrane protein, probably involved in nutrient binding YP_004658361.1 PFAM: SusD family YP_004658362.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: pfo:Pfl01_0902 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold YP_004658363.1 PFAM: alpha/beta hydrolase fold; KEGG: aae:aq_1684 alginate synthesis-related protein; SPTR: uncharacterized protein YP_004658364.1 COGs: COG1874 Beta-galactosidase; KEGG: tle:Tlet_0218 glycoside hydrolase 42 protein; SPTR: Glycoside hydrolase 42 domain protein YP_004658365.1 PFAM: Beta-galactosidase trimerisation domain; Beta-galactosidase; InterPro IPR012944; KEGG: sli:Slin_2992 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein YP_004658366.1 PFAM: SusD family; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1460 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor YP_004658367.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: lby:Lbys_2249 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR YP_004658368.1 PFAM: FecR protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284:IPR014327; KEGG: lby:Lbys_2250 RNA polymerase, sigma-24 subunit, ecf subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70 YP_004658369.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR007630:IPR014284; KEGG: fjo:Fjoh_2896 ECF subfamily RNA polymerase sigma-24 factor; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; SPTR: ECF subfamily RNA polymerase sigma-24 subunit; TIGRFAM: RNA polymerase sigma-70 YP_004658370.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR YP_004658371.1 PFAM: FecR protein; InterPro IPR011662:IPR012910:IPR000531; KEGG: shg:Sph21_4333 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein YP_004658372.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: shg:Sph21_4332 RagB/SusD domain-containing protein; PFAM: RagB/SusD; SPTR: uncharacterized protein YP_004658373.1 PFAM: SusD family; KEGG: sli:Slin_4316 hypothetical protein; SPTR: uncharacterized protein YP_004658374.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR007630:IPR014284; KEGG: sli:Slin_6565 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004658375.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: dfe:Dfer_2117 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR YP_004658376.1 PFAM: FecR protein; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_2219 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004658377.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_2261 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: uncharacterized protein YP_004658378.1 PFAM: SusD family; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: dfe:Dfer_4489 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004658379.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sli:Slin_2652 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004658380.1 PFAM: Xylose isomerase-like TIM barrel YP_004658381.1 COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR002792:IPR010280:IPR001566; KEGG: psn:Pedsa_3674 23S rRNA m(5)U-1939 methyltransferase; PFAM: (Uracil-5)-methyltransferase; Deoxyribonuclease/rho motif-related TRAM; SPTR: 23S rRNA m(5)U-1939 methyltransferase; TIGRFAM: 23S rRNA methyltransferase/RumA YP_004658382.1 PFAM: TRAM domain; tRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: sli:Slin_1687 hypothetical protein; SPTR: uncharacterized protein YP_004658383.1 COGs: COG0657 Esterase/lipase; KEGG: cat:CA2559_11223 probable lipase; SPTR: lipase YP_004658384.1 PFAM: alpha/beta hydrolase fold; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_5738 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004658385.1 PFAM: short chain dehydrogenase; KEGG: sli:Slin_1685 hypothetical protein; SPTR: uncharacterized protein YP_004658386.1 InterPro IPR010895; KEGG: sli:Slin_2026 CHRD domain containing protein; PFAM: CHRD; SMART: CHRD; SPTR: CHRD domain containing protein YP_004658387.1 PFAM: CHRD domain; COGs: COG1048 Aconitase A; InterPro IPR001030:IPR000573:IPR006248; KEGG: chu:CHU_2223 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; SPTR: Aconitase; TIGRFAM: Aconitase, mitochondrial-like YP_004658388.1 PFAM: Aconitase C-terminal domain; Aconitase (aconitate hydratase); TIGRFAM: aconitate hydratase, mitochondrial YP_004658389.1 COGs: COG1524 Uncharacterized protein of the AP superfamily; InterPro IPR002591; KEGG: sli:Slin_6200 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase YP_004658390.1 PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase; COGs: COG0855 Polyphosphate kinase; HAMAP: Polyphosphate kinase; InterPro IPR003414; KEGG: sli:Slin_2997 polyphosphate kinase; PFAM: Polyphosphate kinase; PRIAM: Polyphosphate kinase; SPTR: Polyphosphate kinase; TIGRFAM: polyphosphate kinase 1 YP_004658391.1 PFAM: Polyphosphate kinase; TIGRFAM: polyphosphate kinase 1 YP_004658392.1 COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterProIPR003594:IPR001241:IPR011557:IPR013506:IPR 006171:IPR002288; KEGG: dfe:Dfer_4986 DNA gyrase, B subunit; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like; SPTR: DNA gyrase subunit B; TIGRFAM: DNA gyrase, subunit B YP_004658393.1 PFAM: Toprim domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA gyrase, B subunit; KEGG: phe:Phep_4112 tetratricopeptide domain-containing protein; SPTR: Tetratricopeptide domain protein YP_004658394.1 KEGG: sli:Slin_3425 hypothetical protein; SPTR: uncharacterized protein YP_004658395.1 KEGG: dfe:Dfer_4738 ASPIC/UnbV domain protein; SPTR: ASPIC/UnbV domain protein YP_004658396.1 PFAM: ASPIC and UnbV; KEGG: sli:Slin_3979 hypothetical protein; SPTR: uncharacterized protein YP_004658397.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_3978 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug YP_004658398.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; manually curated YP_004658399.1 PFAM: Membrane dipeptidase (Peptidase M19); COGs: COG4850 conserved hypothetical protein; InterPro IPR019236; KEGG: phe:Phep_4163 hypothetical protein; PFAM: Protein of unknown function DUF2183; SPTR: uncharacterized protein YP_004658400.1 PFAM: Uncharacterized conserved protein (DUF2183); COGs: COG1597 Sphingosine kinase; InterPro IPR001206; KEGG: phe:Phep_4164 diacylglycerol kinase catalytic subunit; PFAM: Diacylglycerol kinase, catalytic region; SMART: Diacylglycerol kinase, catalytic region; SPTR: uncharacterized protein YP_004658401.1 PFAM: Diacylglycerol kinase catalytic domain; Diacylglycerol kinase accessory domain; KEGG: sli:Slin_2995 hypothetical protein; SPTR: uncharacterized protein YP_004658402.1 COGs: COG0686 Alanine dehydrogenase; InterPro IPR007886:IPR007698; KEGG: sli:Slin_2994 alanine dehydrogenase/PNT domain protein; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal; PRIAM: Alanine dehydrogenase; SPTR: Alanine dehydrogenase/PNT domain protein YP_004658403.1 PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase; COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: sli:Slin_2993 hypothetical protein; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria; SPTR: uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria YP_004658404.1 PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family YP_004658405.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: dfe:Dfer_4956 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein YP_004658406.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; KEGG: sli:Slin_1872 hypothetical protein; SPTR: uncharacterized protein YP_004658407.1 PFAM: Protein of unknown function (DUF3570); SPTR: uncharacterized protein YP_004658408.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_1228 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Glucose 1-dehydrogenase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004658409.1 PFAM: short chain dehydrogenase; COGs: COG2909 ATP-dependent transcriptional regulator protein; InterPro IPR000792; KEGG: aba:Acid345_2902 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: Transcriptional regulator, LuxR family YP_004658410.1 PFAM: Bacterial regulatory proteins, luxR family; KEGG: aba:Acid345_2901 hypothetical protein; SPTR: uncharacterized protein YP_004658411.1 COGs: COG2378 transcriptional regulator protein; KEGG: cpi:Cpin_1199 transcriptional regulator; SPTR: transcriptional regulator protein YP_004658412.1 KEGG: sli:Slin_3847 CRISPR-associated protein Cas6; SPTR: CRISPR-associated protein Cas6 YP_004658413.1 COGs: COG1583 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR010156; KEGG: cts:Ctha_1732 CRISPR-associated protein Cas6; SPTR: CRISPR-associated protein Cas6; TIGRFAM: CRISPR-associated protein, Cas6 YP_004658414.1 PFAM: CRISPR associated protein Cas6; TIGRFAM: CRISPR-associated endoribonuclease Cas6; KEGG: cts:Ctha_1731 hypothetical protein; SPTR: uncharacterized protein YP_004658415.1 COGs: COG1203 helicase; InterProIPR001650:IPR006675:IPR006483:IPR006474:IPR 006674; KEGG: cts:Ctha_1730 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; DNA/RNA helicase, C-terminal; SMART: DNA/RNA helicase, C-terminal; SPTR: Metal dependent phosphohydrolase; TIGRFAM: Helicase Cas3, CRISPR-associated, core; CRISPR-associated HD domain; HDIG YP_004658416.1 PFAM: HD domain; DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated endonuclease Cas3-HD; uncharacterized domain HDIG; KEGG: cts:Ctha_1729 hypothetical protein; SPTR: uncharacterized protein YP_004658417.1 COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated YP_004658418.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; KEGG: cts:Ctha_1728 hypothetical protein; SPTR: uncharacterized protein YP_004658420.1 COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: rlg:Rleg_5475 AAA ATPase; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein YP_004658421.1 COGs: COG1468 RecB family exonuclease; InterPro IPR013343; KEGG: osp:Odosp_1295 CRISPR-associated protein Cas4; PFAM: CRISPR-associated protein Cas4; SPTR: CRISPR-associated exonuclease, Cas4 family; TIGRFAM: CRISPR-associated protein Cas4 YP_004658422.1 PFAM: Domain of unknown function DUF83; TIGRFAM: CRISPR-associated protein Cas4; COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR019858:IPR002729; KEGG: osp:Odosp_1294 CRISPR-associated protein Cas1; PFAM: CRISPR-associated protein Cas1; SPTR: CRISPR-associated protein Cas1; TIGRFAM: CRISPR-associated protein Cas1, HMARI/TNEAP subtype; CRISPR-associated protein Cas1 YP_004658423.1 PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP; CRISPR-associated endonuclease Cas1; COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR003799; KEGG: pgi:PG2013 CRISPR-associated Cas2 family protein; SPTR: CRISPR-associated protein Cas2; TIGRFAM: Protein of unknown function DUF196 YP_004658424.1 PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2; InterPro IPR001387; KEGG: dfe:Dfer_2028 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family YP_004658425.1 PFAM: Helix-turn-helix YP_004658426.1 InterPro IPR019096; PFAM: YopX protein YP_004658427.1 PFAM: YopX protein; COGs: COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenase; InterPro IPR000262; KEGG: rxy:Rxyl_1052 lactate 2-monooxygenase; PFAM: FMN-dependent dehydrogenase; PRIAM: Lactate 2-monooxygenase; SPTR: Isopentenyl-diphosphate delta-isomerase II 2 YP_004658428.1 PFAM: FMN-dependent dehydrogenase; COGs: COG4539 membrane protein; InterPro IPR009305; KEGG: mtt:Ftrac_0080 hypothetical protein; SPTR: Membrane protein YP_004658429.1 PFAM: Protein of unknown function (DUF962); COGs: COG4870 Cysteine protease; InterPro IPR000668; KEGG: psb:Psyr_2881 peptidase C1A, papain; PFAM: Peptidase C1A, papain C-terminal; SMART: Peptidase C1A, papain C-terminal; SPTR: Papain family cysteine protease YP_004658430.1 PFAM: Papain family cysteine protease; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_3987 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR YP_004658431.1 PFAM: short chain dehydrogenase; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sli:Slin_3986 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel YP_004658432.1 PFAM: Xylose isomerase-like TIM barrel; InterPro IPR013428; KEGG: sli:Slin_3985 dehydrogenase; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase YP_004658433.1 TIGRFAM: membrane-bound dehydrogenase domain; COGs: COG0724 RNA-binding protein (RRM domain); InterPro IPR000504; KEGG: rba:RB10458 RNA-binding protein; PFAM: RNA recognition motif, RNP-1; SMART: RNA recognition motif, RNP-1; SPTR: RNA-binding protein YP_004658434.1 PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: cpi:Cpin_0913 peptidase M16 domain protein; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: Peptidase M16 domain protein YP_004658435.1 PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16); COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR014036; KEGG: sli:Slin_0739 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal; SPTR: Transcriptional regulator, DeoR family YP_004658436.1 PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain; InterPro IPR004385:IPR000086; KEGG: dfe:Dfer_3936 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; TIGRFAM: Nucleoside diphosphate pyrophosphatase YP_004658437.1 PFAM: NUDIX domain; TIGRFAM: nudix-type nucleoside diphosphatase, YffH/AdpP family; COGs: COG2971 N-acetylglucosamine kinase; KEGG: dfe:Dfer_3564 hypothetical protein; SPTR: uncharacterized protein YP_004658438.1 PFAM: BadF/BadG/BcrA/BcrD ATPase; KEGG: psn:Pedsa_0334 hypothetical protein; SPTR: uncharacterized protein YP_004658439.1 PFAM: Protein of unknown function (DUF1044) YP_004658440.1 COGs: COG0321 Lipoate-protein ligase B; HAMAP: Octanoyltransferase; InterPro IPR000544:IPR004143; KEGG: dfe:Dfer_3712 lipoate-protein ligase B; PFAM: Biotin/lipoate A/B protein ligase; PRIAM: Lipoyl(octanoyl) transferase; SPTR: Octanoyltransferase; TIGRFAM: Octanoyltransferase YP_004658441.1 PFAM: Biotin/lipoate A/B protein ligase; TIGRFAM: lipoate-protein ligase B; COGs: COG0514 Superfamily II DNA helicase; InterPro IPR014001:IPR001650:IPR018329:IPR011545; KEGG: dfe:Dfer_3780 ATP-dependent DNA helicase, RecQ family; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent DNA helicase, RecQ family; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, N-terminal YP_004658442.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; InterPro IPR002625; KEGG: dfe:Dfer_2585 Smr protein/MutS2; PFAM: Smr protein/MutS2 C-terminal; SPTR: Smr domain protein YP_004658443.1 PFAM: Smr domain; COGs: COG0443 Molecular chaperone; HAMAP: Chaperone DnaK; InterPro IPR012725:IPR013126; KEGG: dfe:Dfer_1226 molecular chaperone DnaK; PFAM: Heat shock protein 70; SPTR: Chaperone protein DnaK; TIGRFAM: Chaperone DnaK YP_004658444.1 PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK; InterPro IPR019226; PFAM: Protein of unknown function DUF2158 YP_004658445.1 PFAM: Uncharacterized small protein (DUF2158) YP_004658447.1 COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR002818; KEGG: clj:CLJU_c17590 intracellular protease/amidase related enzyme,ThiJ family; PFAM: ThiJ/PfpI; SPTR: DJ-1/PfpI family protein YP_004658448.1 PFAM: DJ-1/PfpI family; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: dfe:Dfer_1022 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family YP_004658449.1 PFAM: Cyclic nucleotide-binding domain; KEGG: dfe:Dfer_1023 hypothetical protein; SPTR: uncharacterized protein YP_004658450.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: sli:Slin_4170 peptidase M16 domain protein; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: Peptidase M16 domain protein YP_004658451.1 PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16); COGs: COG2183 Transcriptional accessory protein; InterPro IPR006641:IPR018974:IPR003029; KEGG: dfe:Dfer_1085 RNA binding S1 domain protein; PFAM: Tex-like protein, N-terminal; Ribosomal protein S1, RNA binding domain; SPTR: RNA binding S1 domain protein YP_004658452.1 PFAM: Tex-like protein N-terminal domain; S1 RNA binding domain; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region; COGs: COG4857 kinase; InterPro IPR002575; KEGG: cao:Celal_1559 aminoglycoside phosphotransferase; PFAM: Aminoglycoside phosphotransferase; SPTR: Aminoglycoside phosphotransferase YP_004658453.1 PFAM: Phosphotransferase enzyme family; COGs: COG0358 DNA primase; InterProIPR002694:IPR006154:IPR006295:IPR013264:IPR 006171; KEGG: dfe:Dfer_3370 DNA primase; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain; SPTR: DNA primase; TIGRFAM: DNA primase, DnaG YP_004658454.1 PFAM: Toprim domain; CHC2 zinc finger; DNA primase catalytic core, N-terminal domain; TIGRFAM: DNA primase, catalytic core; COGs: COG2355 Zn-dependent dipeptidase microsomal dipeptidase homolog; InterPro IPR008257; KEGG: lby:Lbys_2765 membrane dipeptidase; PFAM: Peptidase M19, renal dipeptidase; PRIAM: Membrane dipeptidase; SPTR: Membrane dipeptidase YP_004658455.1 PFAM: Membrane dipeptidase (Peptidase M19); InterPro IPR009739; KEGG: vpa:VP1847 hypothetical protein; PFAM: Protein of unknown function DUF1311; SPTR: uncharacterized protein YP_004658456.1 PFAM: Protein of unknown function (DUF1311); COGs: COG1600 Uncharacterized Fe-S protein; InterPro IPR004453:IPR013542:IPR001450; KEGG: sli:Slin_1519 iron-sulfur cluster binding protein; PFAM: Domain of unknown function DUF1730; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: Iron-sulfur cluster binding protein; TIGRFAM: 4Fe-4S cluster binding YP_004658457.1 PFAM: Domain of unknown function (DUF1730); TIGRFAM: iron-sulfur cluster binding protein, COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: bth:BT_2763 transposase; PFAM: Transposase, mutator type; SPTR: Transposase YP_004658458.1 PFAM: Transposase, Mutator family; KEGG: tca:659090 kinesin 7; SPTR: Surface protein YP_004658459.1 COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated YP_004658460.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; COGs: COG2223 Nitrate/nitrite transporter; InterPro IPR011701; KEGG: dfe:Dfer_1017 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004658461.1 PFAM: Major Facilitator Superfamily; COGs: COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; InterPro IPR000887; KEGG: dfe:Dfer_1016 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG/KHG aldolase; SPTR: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: KDPG/KHG aldolase YP_004658462.1 PFAM: KDPG and KHG aldolase; TIGRFAM: Entner-Doudoroff aldolase; COGs: COG4993 Glucose dehydrogenase; InterProIPR018391:IPR019551:IPR002372:IPR019556:IPR 003088; KEGG: dfe:Dfer_1014 quinoprotein glucose dehydrogenase; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal; Cytochrome c, class I; PRIAM: Quinoprotein glucose dehydrogenase; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Quinoprotein glucose dehydrogenase YP_004658463.1 PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus; Cytochrome c; Pyrrolo-quinoline quinone coenzyme C-terminus; PQQ enzyme repeat; KEGG: dfe:Dfer_3444 hypothetical protein; SPTR: uncharacterized protein YP_004658464.1 COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341; KEGG: dfe:Dfer_1010 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; PRIAM: Galactonate dehydratase; SPTR: Mandelate racemase/muconate lactonizing protein YP_004658465.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR006311:IPR013341:IPR013342; KEGG: dfe:Dfer_1008 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal; PRIAM: Galactonate dehydratase; SPTR: Mandelate racemase/muconate lactonizing protein YP_004658466.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YP_004658467.1 COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: fjo:Fjoh_4487 nitroreductase; PFAM: Nitroreductase-like; SPTR: Nitroreductase YP_004658468.1 PFAM: Nitroreductase; COGs: COG0135 Phosphoribosylanthranilate isomerase; KEGG: sli:Slin_0951 N-(5'phosphoribosyl)anthranilate isomerase (PRAI); SPTR: N-(5'-phosphoribosyl)anthranilate isomerase YP_004658469.1 InterPro IPR001434:IPR008454; KEGG: cag:Cagg_3132 hypothetical protein; PFAM: Protein of unknown function DUF11; Collagen-binding surface protein Cna-like, B region; SPTR: Conserved repeat domain protein; TIGRFAM: Protein of unknown function DUF11 YP_004658470.1 PFAM: Cna protein B-type domain; Domain of unknown function DUF11; TIGRFAM: conserved repeat domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: zpr:ZPR_0114 HTH domain-containing protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Coproporphyrinogen III oxidase YP_004658471.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931:IPR013589; KEGG: sli:Slin_2855 transglutaminase; PFAM: Transglutaminase-like; Bacterial transglutaminase-like, N-terminal; SMART: Transglutaminase-like; SPTR: Transglutaminase domain protein YP_004658472.1 PFAM: Transglutaminase-like superfamily; Bacterial transglutaminase-like N-terminal region; COGs: COG3484 proteasome-type protease; InterPro IPR001353; KEGG: sli:Slin_2854 proteasome-type protease; PFAM: Proteasome, subunit alpha/beta; SPTR: proteasome-type protease YP_004658473.1 PFAM: Proteasome subunit; COGs: COG2307 conserved hypothetical protein; InterPro IPR007296; KEGG: sli:Slin_0396 hypothetical protein; PFAM: Protein of unknown function DUF403, bacteria; SPTR: uncharacterized protein YP_004658474.1 PFAM: Bacterial domain of unknown function (DUF403); COGs: COG2017 Galactose mutarotase; InterPro IPR008183; KEGG: sli:Slin_1235 aldose 1-epimerase; PFAM: Aldose 1-epimerase; PRIAM: Aldose 1-epimerase; SPTR: Aldose 1-epimerase YP_004658475.1 PFAM: Aldose 1-epimerase; COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001:IPR001650:IPR011545; KEGG: chu:CHU_1658 DEAD box-related helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD box-related helicase (ATP-dependent RNA helicase) YP_004658476.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: fjo:Fjoh_3739 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: transcriptional regulator YP_004658477.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469:IPR001375; KEGG: shg:Sph21_1018 peptidase s9b dipeptidylpeptidase IV domain protein; SPTR: Peptidase S9B dipeptidylpeptidase IV domain protein YP_004658478.1 PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region; COGs: COG3533 conserved hypothetical protein; InterPro IPR012878:IPR000421; KEGG: cpi:Cpin_4996 hypothetical protein; PFAM: Protein of unknown function DUF1680; Coagulation factor 5/8 type, C-terminal; SPTR: uncharacterized protein YP_004658479.1 PFAM: F5/8 type C domain; glycosyl hydrolase of unknown function (DUF1680); KEGG: sli:Slin_0237 hypothetical protein; SPTR: uncharacterized protein YP_004658480.1 InterPro IPR005184; KEGG: lby:Lbys_3081 hypothetical protein; PFAM: Domain of unknown function DUF306, Meta/HslJ; SPTR: uncharacterized protein YP_004658481.1 PFAM: META domain; KEGG: nmu:Nmul_A0278 glycosyl transferase; SPTR: uncharacterized protein YP_004658482.1 KEGG: psn:Pedsa_3200 FkbM family methyltransferase; SPTR: Pcmt-protein-L-isoaspartate(D-aspartate) o-methyltransferase YP_004658483.1 InterPro IPR002797; KEGG: dfe:Dfer_4792 hypothetical protein; PFAM: Polysaccharide biosynthesis protein; SPTR: uncharacterized protein YP_004658484.1 PFAM: Polysaccharide biosynthesis protein; COGs: COG0381 UDP-N-acetylglucosamine 2-epimerase; InterPro IPR003331; KEGG: sli:Slin_4071 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; PRIAM: UDP-N-acetylglucosamine 2-epimerase; SPTR: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase YP_004658485.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: bfr:BF4507 glycosyltransferase; PFAM: Glycosyl transferase, group 1; SPTR: glycosyltransferase YP_004658486.1 PFAM: Glycosyl transferases group 1; COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692; KEGG: sli:Slin_0038 peptidase S45 penicillin amidase; PFAM: Peptidase S45, penicillin amidase; PRIAM: Acyl-homoserine-lactone acylase; SPTR: Peptidase S45 penicillin amidase YP_004658487.1 PFAM: Penicillin amidase; COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR011344:IPR000424; KEGG: cpi:Cpin_0936 single-strand binding protein; PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding YP_004658488.1 PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb); COGs: COG4974 Site-specific recombinase XerD; InterPro IPR011946:IPR002104; KEGG: fbc:FB2170_10354 tyrosine type site-specific recombinase; PFAM: Integrase, catalytic core, phage; SPTR: TnpF; TIGRFAM: Integrase, integron-type YP_004658489.1 PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase; TIGRFAM: integron integrase; KEGG: ank:AnaeK_3917 hypothetical protein; SPTR: uncharacterized protein YP_004658490.1 PFAM: Protein of unknown function (DUF2679); SPTR: uncharacterized protein YP_004658491.1 KEGG: ana:all3044 hypothetical protein; SPTR: All3044 protein YP_004658492.1 KEGG: hba:Hbal_0425 hypothetical protein; SPTR: uncharacterized protein YP_004658493.1 COGs: COG3832 conserved hypothetical protein; InterPro IPR013538; KEGG: psn:Pedsa_0910 activator of HSP90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase homologue 1-like; SPTR: Activator of Hsp90 ATPase 1 family protein YP_004658494.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein; InterPro IPR001845; KEGG: shg:Sph21_2794 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family YP_004658495.1 PFAM: Bacterial regulatory protein, arsR family; manually curated YP_004658496.1 PFAM: PKD domain; KEGG: drt:Dret_2521 hypothetical protein; SPTR: uncharacterized protein YP_004658497.1 PFAM: Uncharacterised protein family (UPF0236) YP_004658498.1 KEGG: phe:Phep_1744 hypothetical protein; SPTR: uncharacterized protein YP_004658499.1 Prodigal; manually curated YP_004658500.1 PFAM: Acyltransferase; KEGG: nhl:Nhal_2068 hypothetical protein; SPTR: uncharacterized protein YP_004658501.1 PFAM: Protoglobin YP_004658502.1 InterPro IPR018592; KEGG: fbc:FB2170_11031 hypothetical protein; PFAM: Domain of unknown function DUF2024; SPTR: uncharacterized protein YP_004658503.1 PFAM: Domain of unknown function (DUF2024); InterPro IPR000835; KEGG: fjo:Fjoh_4139 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family YP_004658504.1 PFAM: MarR family; Prodigal; This gene is disrupted by insertion of repetitive element; manually curated YP_004658505.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: fba:FIC_01213 probable integrase; PFAM: Integrase, catalytic core, phage; SPTR: Integrase YP_004658506.1 PFAM: Phage integrase YP_004658507.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: sli:Slin_1635 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family YP_004658508.1 PFAM: Cyclic nucleotide-binding domain; KEGG: chu:CHU_2272 hypothetical protein; SPTR: uncharacterized protein YP_004658509.1 COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR008030; KEGG: sli:Slin_1633 NmrA family protein; SPTR: NmrA family protein YP_004658510.1 PFAM: NmrA-like family; COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated YP_004658511.1 PFAM: Rhodopirellula transposase; 'Paired box' domain YP_004658513.1 manually curated YP_004658514.1 PFAM: Cyclic nucleotide-binding domain; COGs: COG1018 Flavodoxin reductase (ferredoxin-NADPH reductase) family 1; InterPro IPR006694:IPR008333:IPR001433:IPR001041; KEGG: pfl:PFL_3137 phenylacetate-CoA oxygenase, PaaK subunit; PFAM: Fatty acid hydroxylase; Oxidoreductase FAD-binding region; Oxidoreductase FAD/NAD(P)-binding; Ferredoxin; SPTR: Sterol desaturase YP_004658515.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; Fatty acid hydroxylase superfamily; KEGG: cpi:Cpin_2508 hypothetical protein; SPTR: uncharacterized protein YP_004658516.1 COGs: COG3449 DNA gyrase inhibitor; InterPro IPR018060:IPR000005:IPR010499; KEGG: gur:Gura_3503 transcription activator, effector binding; PFAM: Bacterial transcription activator, effector binding; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC-type YP_004658517.1 PFAM: Bacterial transcription activator, effector binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: cbi:CLJ_0016 hypothetical protein; SPTR: uncharacterized protein YP_004658518.1 PFAM: Polyketide cyclase / dehydrase and lipid transport; manually curated YP_004658519.1 PFAM: WD40-like Beta Propeller Repeat; manually curated YP_004658520.1 PFAM: Transposase DDE domain YP_004658521.1 COGs: COG2354 conserved hypothetical protein; InterPro IPR008526; KEGG: shg:Sph21_0217 protein of unknown function DUF808; PFAM: Protein of unknown function DUF808; SPTR: Conserved hypothetical transmembrane protein YP_004658522.1 PFAM: Protein of unknown function (DUF808); COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR006680; KEGG: fba:FIC_00226 dihydroorotase; PFAM: Amidohydrolase 1; PRIAM: Allantoinase; SPTR: Dihydroorotase YP_004658523.1 PFAM: Amidohydrolase; TIGRFAM: dihydroorotase, multifunctional complex type; KEGG: cyh:Cyan8802_1036 hypothetical protein; SPTR: uncharacterized protein YP_004658524.1 COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140; KEGG: sli:Slin_0324 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; PRIAM: Phosphoglycerate dehydrogenase; SPTR: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; manually curated YP_004658525.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; COGs: COG1995 Pyridoxal phosphate biosynthesis protein; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; InterPro IPR005255; KEGG: dfe:Dfer_0418 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; PRIAM: 4-hydroxythreonine-4-phosphate dehydrogenase; SPTR: 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA YP_004658526.1 PFAM: Pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; Prodigal; manually curated YP_004658527.1 PFAM: YicC-like family, N-terminal region; Domain of unknown function (DUF1732); TIGRFAM: TIGR00255 family protein; COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176:IPR006108; KEGG: sli:Slin_3957 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; PRIAM: 3-hydroxyacyl-CoA dehydrogenase; SPTR: 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein YP_004658528.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR001610:IPR003018:IPR003661:IPR 003594:IPR001789:IPR008207:IPR013767; KEGG: sli:Slin_3312 multi-sensor hybrid histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; PAS fold; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; PAS; PAC motif; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS YP_004658529.1 PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; Hpt domain; TIGRFAM: PAS domain S-box; COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); HAMAP: Ribosomal RNA adenine dimethylase; InterPro IPR020598:IPR011530:IPR001737; KEGG: dfe:Dfer_5760 dimethyladenosine transferase; PFAM: Ribosomal RNA adenine methylase transferase; SMART: Ribosomal RNA adenine methylase transferase, N-terminal; SPTR: Ribosomal RNA small subunit methyltransferase A; TIGRFAM: Ribosomal RNA adenine dimethylase YP_004658530.1 PFAM: Ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase; COGs: COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); InterPro IPR000644:IPR006669:IPR006668:IPR006667; KEGG: sli:Slin_3299 magnesium transporter; PFAM: MgtE integral membrane region; Cystathionine beta-synthase, core; Magnesium transporter, MgtE intracellular region; SPTR: Magnesium transporter; TIGRFAM: Divalent cation transporter YP_004658531.1 PFAM: MgtE intracellular N domain; CBS domain; Divalent cation transporter; TIGRFAM: Mg2+ transporter (mgtE); COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: ter:Tery_4525 DNA-cytosine methyltransferase; PFAM: DNA methylase, C-5 cytosine-specific; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA methylase, C-5 cytosine-specific YP_004658532.1 PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); InterPro IPR009528; KEGG: ter:Tery_4526 type II site-specific deoxyribonuclease; PFAM: Restriction endonuclease, type II, BsuBI/PstI, C-terminal; PRIAM: Type II site-specific deoxyribonuclease; SPTR: Type II site-specific deoxyribonuclease YP_004658533.1 PFAM: BsuBI/PstI restriction endonuclease C-terminus; InterPro IPR008030; KEGG: sli:Slin_5373 NmrA family protein; SPTR: NmrA family protein YP_004658534.1 PFAM: NmrA-like family; COGs: COG2819 hydrolase of the alpha/beta superfamily; InterPro IPR000801; KEGG: fjo:Fjoh_2146 esterase; PFAM: esterase; SPTR: uncharacterized protein YP_004658535.1 PFAM: esterase YP_004658536.1 COGs: COG1522 Transcriptional regulators; InterPro IPR019888:IPR019887; KEGG: dfe:Dfer_4405 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type; SPTR: Transcriptional regulator, AsnC family YP_004658537.1 PFAM: HTH domain; AsnC family; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_4406 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: L-threonine 3-dehydrogenase; SPTR: NAD-dependent epimerase/dehydratase YP_004658538.1 PFAM: NAD dependent epimerase/dehydratase; COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR011282:IPR004839; KEGG: dfe:Dfer_4407 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase, class I/II; PRIAM: Glycine C-acetyltransferase; SPTR: 2-amino-3-ketobutyrate coenzyme A ligase; TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase YP_004658539.1 PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase; 2-amino-3-ketobutyrate coenzyme A ligase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sli:Slin_6288 sulfatase; PFAM: Sulfatase; PRIAM: Steryl-sulfatase; SPTR: Sulfatase YP_004658540.1 PFAM: Sulfatase; COGs: COG1490 D-Tyr-tRNAtyr deacylase; HAMAP: D-tyrosyl-tRNA(Tyr) deacylase; InterPro IPR003732; KEGG: dfe:Dfer_5755 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; SPTR: D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_004658541.1 PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; COGs: COG4464 Capsular polysaccharide biosynthesis protein; KEGG: cpi:Cpin_4733 capsular polysaccharide biosynthesis protein; SPTR: Capsular polysaccharide biosynthesis protein YP_004658542.1 COGs: COG2094 3-methyladenine DNA glycosylase; HAMAP: 3-methyladenine DNA glycosylase; InterPro IPR003180; KEGG: sli:Slin_0319 DNA-3-methyladenine glycosylase; PFAM: Methylpurine-DNA glycosylase (MPG); PRIAM: DNA-3-methyladenine glycosylase II; SPTR: 3-methyladenine DNA glycosylase; TIGRFAM: Methylpurine-DNA glycosylase (MPG) YP_004658543.1 PFAM: Methylpurine-DNA glycosylase (MPG); TIGRFAM: DNA-3-methyladenine glycosylase (3mg); KEGG: sli:Slin_3865 hypothetical protein; SPTR: uncharacterized protein YP_004658544.1 COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001:IPR001650:IPR000330; KEGG: sli:Slin_6180 SNF2-related protein; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: SNF2-related protein YP_004658545.1 PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR003313:IPR000005; KEGG: dfe:Dfer_5280 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; AraC protein, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004658546.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: sli:Slin_4403 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Aspartate transaminase; SPTR: Aminotransferase class I and II YP_004658547.1 PFAM: Aminotransferase class I and II; COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; InterPro IPR014048; KEGG: cly:Celly_1566 methylated-DNA/protein-cysteinemethyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; SPTR: Methylated-DNA--protein-cysteine S-methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YP_004658548.1 PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase; COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: dfe:Dfer_5434 beta-Ig-H3/fasciclin; PFAM: FAS1 domain; SMART: FAS1 domain; SPTR: Beta-Ig-H3/fasciclin YP_004658549.1 PFAM: Fasciclin domain; KEGG: nve:NEMVE_v1g224714 hypothetical protein; SPTR: Hemopexin repeats containing protein YP_004658550.1 InterPro IPR001434; KEGG: sli:Slin_0177 hypothetical protein; PFAM: Protein of unknown function DUF11; SPTR: Conserved repeat domain protein; TIGRFAM: Protein of unknown function DUF11 YP_004658551.1 PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain; InterPro IPR003343:IPR010221:IPR003367; KEGG: cpi:Cpin_3623 outer membrane adhesin like protein; SMART: Bacterial Ig-like, group 2; SPTR: Outer membrane adhesin like protein; TIGRFAM: VCBS repeat domain YP_004658552.1 InterPro IPR003367; KEGG: dfe:Dfer_0535 hypothetical protein; SPTR: Probable aggregation factor core protein MAFp3, isoform C YP_004658553.1 KEGG: dfe:Dfer_2338 hypothetical protein; SPTR: uncharacterized protein YP_004658554.1 PFAM: C1q domain YP_004658555.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_6424 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004658556.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: fjo:Fjoh_1442 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: Integral membrane sensor signal transduction histidine kinase YP_004658557.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: fjo:Fjoh_1442 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: Integral membrane sensor signal transduction histidine kinase YP_004658558.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004658559.1 PFAM: Biopterin-dependent aromatic amino acid hydroxylase; TIGRFAM: phenylalanine-4-hydroxylase, monomeric form; COGs: COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins; InterPro IPR005956:IPR004360; KEGG: sli:Slin_6320 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; PRIAM: 4-hydroxyphenylpyruvate dioxygenase; SPTR: 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase YP_004658560.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR005914:IPR000873; KEGG: sli:Slin_4421 acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Acetoacetate--CoA ligase; SPTR: Acetoacetyl-CoA synthase; TIGRFAM: Acetoacetyl-CoA synthase YP_004658563.1 PFAM: Glycosyl transferases group 1; KEGG: lby:Lbys_2798 hypothetical protein; SPTR: uncharacterized protein YP_004658564.1 COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_4648 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor YP_004658565.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004658566.1 InterPro IPR002516; KEGG: mpl:Mpal_2194 glycosyl transferase 11; PFAM: Glycosyl transferase, family 11; SPTR: Glycosyl transferase 11 YP_004658567.1 PFAM: Glycosyl transferase 11; InterPro IPR003088; KEGG: pfo:Pfl01_1738 cytochrome c, class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c, class I YP_004658568.1 PFAM: Cytochrome c; InterPro IPR012577; KEGG: sli:Slin_0395 NIPSNAP family containing protein; PFAM: NIPSNAP; SPTR: NIPSNAP family containing protein YP_004658569.1 PFAM: NIPSNAP; COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129; KEGG: sli:Slin_1715 glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase; SPTR: Glycerophosphoryl diester phosphodiesterase YP_004658570.1 PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: mrd:Mrad2831_3735 hypothetical protein; SPTR: uncharacterized protein YP_004658571.1 InterPro IPR003675; KEGG: cbh:CLC_0981 CAAX amino terminal protease; PFAM: Abortive infection protein; SPTR: Predicted metal-dependent membrane protease YP_004658572.1 PFAM: CAAX amino terminal protease; InterPro IPR002559; KEGG: app:CAP2UW1_1881 transposase IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase IS4 family protein YP_004658573.1 PFAM: Transposase DDE domain; InterPro IPR003675; KEGG: slg:SLGD_00275 hypothetical protein; PFAM: Abortive infection protein; SPTR: uncharacterized protein YP_004658574.1 PFAM: CAAX amino terminal protease YP_004658575.1 COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated YP_004658576.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; Prodigal; manually curated YP_004658577.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR008030; KEGG: sli:Slin_3209 hypothetical protein; SPTR: uncharacterized protein YP_004658579.1 COGs: COG1285 membrane protein; InterPro IPR003416; KEGG: dfe:Dfer_2880 MgtC/SapB transporter; PFAM: MgtC/SapB transporter; SPTR: MgtC/SapB transporter YP_004658580.1 PFAM: MgtC family; COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR007865:IPR000994; KEGG: dfe:Dfer_2876 peptidase M24; PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; SPTR: Peptidase M24 YP_004658581.1 PFAM: Aminopeptidase P, N-terminal domain; Metallopeptidase M24; COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000994; KEGG: osp:Odosp_3645 peptidase M24; PFAM: Peptidase M24, structural domain; PRIAM: Xaa-Pro aminopeptidase; SPTR: Xaa-Pro aminopeptidase YP_004658582.1 PFAM: Aminopeptidase P, N-terminal domain; Metallopeptidase M24; COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: sli:Slin_3456 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Peptidase S8 and S53 subtilisin kexin sedolisin YP_004658583.1 PFAM: Subtilase; Prodigal; manually curated YP_004658584.1 KEGG: sli:Slin_5166 hypothetical protein; SPTR: uncharacterized protein YP_004658585.1 COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR002646:IPR006674; KEGG: dfe:Dfer_2415 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; PFAM: Polynucleotide adenylyltransferase region; Metal-dependent phosphohydrolase, HD region, subdomain; SPTR: Polynucleotide adenylyltransferase/metal dependent phosphohydrolase YP_004658586.1 PFAM: HD domain; Poly A polymerase head domain; InterPro IPR018914; KEGG: sli:Slin_4879 hypothetical protein; PFAM: Protein of unknown function DUF2480; SPTR: uncharacterized protein YP_004658587.1 PFAM: Protein of unknown function (DUF2480); COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891; KEGG: sli:Slin_3023 hydroxymethylglutaryl-CoA lyase; PFAM: Pyruvate carboxyltransferase; PRIAM: Hydroxymethylglutaryl-CoA lyase; SPTR: Hydroxymethylglutaryl-CoA lyase YP_004658588.1 PFAM: HMGL-like; InterPro IPR003749; KEGG: cao:Celal_2741 thiamines protein; PFAM: ThiamineS; SPTR: ThiamineS protein YP_004658589.1 PFAM: ThiS family; TIGRFAM: molybdopterin converting factor, subunit 1, non-archaeal; COGs: COG1401 GTPase subunit of restriction endonuclease; InterPro IPR011704; KEGG: sli:Slin_4510 ATPase AAA; PFAM: ATPase associated with various cellular activities, AAA-5; SPTR: ATPase associated with various cellular activities AAA_5 YP_004658590.1 PFAM: AAA domain (dynein-related subfamily) YP_004658593.1 PFAM: DJ-1/PfpI family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: sli:Slin_5976 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: Response regulator receiver protein YP_004658594.1 PFAM: LytTr DNA-binding domain; InterPro IPR002591; KEGG: dfe:Dfer_3007 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase YP_004658595.1 PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase; InterPro IPR019734:IPR001440:IPR013105; KEGG: sli:Slin_1475 hypothetical protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein YP_004658596.1 PFAM: Tetratricopeptide repeat; COGs: COG0366 Glycosidase; InterPro IPR006589:IPR015171:IPR006047:IPR019492; KEGG: sli:Slin_2883 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic region; Cyclomaltodextrinase, N-terminal; Cyclo-malto-dextrinase, C-terminal; PRIAM: Cyclomaltodextrinase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; SPTR: Alpha amylase catalytic region YP_004658597.1 PFAM: Cyclomaltodextrinase, N-terminal; Alpha amylase, catalytic domain; Cyclo-malto-dextrinase C-terminal domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: dfe:Dfer_5280 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004658598.1 PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR006402:IPR005834; KEGG: dfe:Dfer_2943 HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; manually curated YP_004658599.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; InterPro IPR004360; KEGG: sli:Slin_3076 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004658600.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; InterPro IPR011701; KEGG: sli:Slin_3423 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004658601.1 PFAM: Major Facilitator Superfamily; KEGG: chu:CHU_2843 hypothetical protein; SPTR: uncharacterized protein YP_004658602.1 InterPro IPR002482:IPR018392; KEGG: dfe:Dfer_5051 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Peptidoglycan-binding LysM YP_004658603.1 PFAM: LysM domain; COGs: COG1597 Sphingosine kinase; InterPro IPR001206:IPR005218; KEGG: sli:Slin_0403 diacylglycerol kinase; PFAM: Diacylglycerol kinase, catalytic region; SMART: Diacylglycerol kinase, catalytic region; SPTR: Diacylglycerol kinase catalytic region; TIGRFAM: Conserved hypothetical protein CHP00147 YP_004658604.1 PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: lipid kinase, YegS/Rv2252/BmrU family; COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); InterPro IPR010227:IPR001750; KEGG: sli:Slin_4908 proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: Proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: NADH-quinone oxidoreductase, chain M YP_004658605.1 PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR003945:IPR001516:IPR001750; KEGG: sli:Slin_4909 proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; PRIAM: NADH dehydrogenase (quinone); SPTR: Proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5 YP_004658606.1 PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: sli:Slin_2494 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein YP_004658607.1 PFAM: alpha/beta hydrolase fold; KEGG: sli:Slin_0364 hypothetical protein; SPTR: uncharacterized protein YP_004658608.1 InterPro IPR000835; KEGG: dfe:Dfer_2423 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family YP_004658609.1 PFAM: MarR family; COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: dfe:Dfer_2422 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YceI family protein YP_004658610.1 PFAM: YceI-like domain; COGs: COG4642 conserved hypothetical protein; InterPro IPR003409; KEGG: sli:Slin_6615 hypothetical protein; PFAM: MORN motif; SMART: MORN motif; SPTR: MORN repeat-containing protein YP_004658611.1 PFAM: Peptidase M48; MORN repeat; COGs: COG1801 conserved hypothetical protein; InterPro IPR002763; KEGG: sli:Slin_5530 hypothetical protein; PFAM: Protein of unknown function DUF72; SPTR: uncharacterized protein YP_004658612.1 PFAM: Protein of unknown function DUF72; InterPro IPR017941; KEGG: sli:Slin_4885 Rieske (2Fe-2S) iron-sulphur domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Rieske (2Fe-2S) iron-sulphur domain protein YP_004658613.1 PFAM: Rieske [2Fe-2S] domain; KEGG: dfe:Dfer_4137 hypothetical protein; SPTR: uncharacterized protein YP_004658614.1 InterPro IPR007372; KEGG: dfe:Dfer_4138 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YceI family protein YP_004658615.1 PFAM: YceI-like domain; InterPro IPR010496; KEGG: dfe:Dfer_4583 protein of unknown function DUF1080; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein YP_004658616.1 PFAM: Domain of Unknown Function (DUF1080); COGs: COG0623 Enoyl-(acyl-carrier-protein); KEGG: lby:Lbys_2165 enoyl-(acyl-carrier-protein) reductase (NADH); PRIAM: Enoyl-[acyl-carrier-protein] reductase (NADH); SPTR: Enoyl-[acyl-carrier-protein] reductase [NADH] YP_004658617.1 COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_3751 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related YP_004658618.1 COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR004634:IPR004635:IPR002142; KEGG: dfe:Dfer_2800 signal peptide peptidase SppA, 67K type; PFAM: Peptidase S49; SPTR: Signal peptide peptidase SppA, 67K type; TIGRFAM: Peptidase S49, protease IV; Peptidase S49, SppA YP_004658619.1 PFAM: Peptidase S49; TIGRFAM: signal peptide peptidase SppA, 36K type; signal peptide peptidase SppA, 67K type; SPTR: Transposase IS4 family protein YP_004658621.1 COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: cao:Celal_2798 transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase YP_004658622.1 PFAM: Transposase YP_004658623.1 COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594:IPR011712; KEGG: sli:Slin_6208 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; SMART: ATP-binding region, ATPase-like; SPTR: Two-component system sensor histidine kinase YP_004658624.1 PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: rca:Rcas_1142 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SPTR: Two-component system response regulator, LuxR family YP_004658625.1 PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; KEGG: pam:PANA_2363 hypothetical protein; SPTR: uncharacterized protein YP_004658626.1 COGs: COG0515 Serine/threonine protein kinase; InterPro IPR020635:IPR002290:IPR017442; KEGG: sli:Slin_2968 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; PRIAM: Calcium/calmodulin-dependent protein kinase; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, subgroup, catalytic domain; SPTR: Serine/threonine protein kinase YP_004658627.1 PFAM: Protein kinase domain; KEGG: sli:Slin_3310 hypothetical protein; SPTR: uncharacterized protein YP_004658630.1 KEGG: chu:CHU_2528 hypothetical protein; SPTR: CHU large protein; uncharacterized YP_004658631.1 KEGG: dal:Dalk_5199 hypothetical protein; SPTR: Ribonuclease, Rne/Rng family protein YP_004658632.1 COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: aba:Acid345_4155 transcriptional regulatory protein-like; SPTR: WD40-like Beta Propeller YP_004658633.1 PFAM: WD40-like Beta Propeller Repeat; KEGG: dfe:Dfer_3581 hypothetical protein; SPTR: uncharacterized protein YP_004658634.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: dfe:Dfer_3582 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein YP_004658635.1 PFAM: OmpA family; InterPro IPR011647; KEGG: cyn:Cyan7425_4935 KWG repeat-containing protein; PFAM: KWG Leptospira; SPTR: KWG repeat domain protein YP_004658636.1 PFAM: KWG Leptospira; InterPro IPR011600; KEGG: sli:Slin_2969 peptidase C14 caspase catalytic subunit P20; PFAM: Peptidase C14, caspase catalytic; SPTR: Peptidase C14 caspase catalytic subunit p20 YP_004658637.1 PFAM: Caspase domain; COGs: COG0631 Serine/threonine protein phosphatase; InterPro IPR001932; KEGG: pdi:BDI_1037 serine/threonine phosphatase; SMART: Protein phosphatase 2C-related; SPTR: uncharacterized protein YP_004658638.1 PFAM: Protein phosphatase 2C; InterPro IPR000253; KEGG: pdi:BDI_1036 hypothetical protein; PFAM: Forkhead-associated; SPTR: FHA domain protein YP_004658639.1 PFAM: FHA domain; KEGG: sli:Slin_2972 hypothetical protein; SPTR: uncharacterized protein YP_004658640.1 InterPro IPR000253; KEGG: pdi:BDI_1034 ABC transporter ATP-binding protein; PFAM: Forkhead-associated; SMART: Forkhead-associated; SPTR: uncharacterized protein YP_004658641.1 PFAM: FHA domain; InterPro IPR000601:IPR002035; KEGG: sli:Slin_1773 von Willebrand factor type A; PFAM: PKD; von Willebrand factor, type A; SMART: von Willebrand factor, type A; PKD; SPTR: von Willebrand factor type A YP_004658642.1 PFAM: von Willebrand factor type A domain; PKD domain; COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterPro IPR003593:IPR003959:IPR013093:IPR019489; KEGG: dfe:Dfer_3576 ATPase AAA-2 domain protein; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent protease YP_004658643.1 PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ATPase associated with various cellular activities (AAA) YP_004658644.1 KEGG: bfr:BF1956 hypothetical protein; SPTR: uncharacterized protein YP_004658645.1 KEGG: dfe:Dfer_3586 hypothetical protein; SPTR: uncharacterized protein YP_004658646.1 PFAM: Phage tail sheath protein; KEGG: cpi:Cpin_4871 hypothetical protein; SPTR: uncharacterized protein YP_004658647.1 KEGG: lbj:LBJ_0272 hypothetical protein; SPTR: uncharacterized protein YP_004658648.1 COGs: COG3501 conserved hypothetical protein; InterPro IPR006533; KEGG: cpi:Cpin_5894 rhs element Vgr protein; PFAM: Rhs element Vgr protein; SPTR: Rhs element Vgr protein; TIGRFAM: Rhs element Vgr protein YP_004658649.1 PFAM: Phage late control gene D protein (GPD); Phage-related baseplate assembly protein YP_004658650.1 InterPro IPR007048; KEGG: cao:Celal_3741 gpW/GP25 family protein; PFAM: GPW/gp25; SPTR: GpW/GP25 family protein YP_004658651.1 PFAM: Gene 25-like lysozyme; KEGG: cpi:Cpin_2305 hypothetical protein; SPTR: uncharacterized protein YP_004658652.1 KEGG: cpi:Cpin_2308 hypothetical protein; SPTR: uncharacterized protein YP_004658653.1 KEGG: dfe:Dfer_3591 hypothetical protein; SPTR: uncharacterized protein YP_004658654.1 KEGG: sli:Slin_4112 hypothetical protein; SPTR: uncharacterized protein YP_004658655.1 PFAM: Bacterial protein of unknown function (DUF876); InterPro IPR008727; KEGG: cpi:Cpin_3928 PaaR repeat-containing protein; PFAM: PAAR motif; SPTR: PAAR repeat-containing protein YP_004658656.1 PFAM: PAAR motif YP_004658658.1 InterPro IPR001763; KEGG: sli:Slin_1457 rhodanese; SMART: Rhodanese-like; SPTR: Rhodanese domain-containing protein; manually curated YP_004658659.1 PFAM: Rhodanese-like domain; Prodigal; manually curated YP_004658660.1 InterPro IPR007484; KEGG: dfe:Dfer_3904 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28 YP_004658661.1 PFAM: Peptidase M28; COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: psa:PST_4158 sugar acetylase; PFAM: Acyltransferase 3; SPTR: Sugar acetylase YP_004658662.1 PFAM: Acyltransferase; KEGG: sli:Slin_5460 hypothetical protein; SPTR: uncharacterized protein YP_004658663.1 InterPro IPR006644:IPR013529; KEGG: dfe:Dfer_3550 dystroglycan-type cadherin domain protein; PFAM: Glycoside hydrolase, family 42, N-terminal; SMART: Dystroglycan-type cadherin-like; SPTR: Dystroglycan-type cadherin domain protein YP_004658664.1 PFAM: Beta-galactosidase; InterPro IPR013529; KEGG: dfe:Dfer_3550 dystroglycan-type cadherin domain protein; PFAM: Glycoside hydrolase, family 42, N-terminal; SPTR: Dystroglycan-type cadherin domain protein YP_004658665.1 PFAM: Beta-galactosidase; Ig domain YP_004658666.1 COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR002818; KEGG: pjd:Pjdr2_0637 ThiJ/PfpI domain protein; PFAM: ThiJ/PfpI; SPTR: Transcriptional regulator, AraC family protein YP_004658667.1 PFAM: DJ-1/PfpI family; InterPro IPR000620; KEGG: cpi:Cpin_4054 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: uncharacterized protein YP_004658668.1 PFAM: EamA-like transporter family; COGs: COG1496 conserved hypothetical protein; InterPro IPR003730; KEGG: sli:Slin_3530 hypothetical protein; PFAM: Multi-copper polyphenol oxidoreductase, laccase; SPTR: uncharacterized protein; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase YP_004658669.1 PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: uncharacterized protein, YfiH family; COGs: COG0461 Orotate phosphoribosyltransferase; HAMAP: Orotate phosphoribosyltransferase; InterPro IPR004467:IPR000836; KEGG: sli:Slin_1439 orotate phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; PRIAM: Orotate phosphoribosyltransferase; SPTR: Orotate phosphoribosyltransferase; TIGRFAM: Orotate phosphoribosyl transferase YP_004658670.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: orotate phosphoribosyltransferase; COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: sli:Slin_3549 UspA domain protein; PFAM: UspA; SPTR: UspA domain protein YP_004658671.1 PFAM: Universal stress protein family; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR013973; KEGG: dfe:Dfer_5047 response regulator receiver protein; PFAM: PglZ domain; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein YP_004658672.1 PFAM: PglZ domain; Response regulator receiver domain; InterPro IPR012910; KEGG: dfe:Dfer_2367 hypothetical protein; PFAM: TonB-dependent receptor, plug; SPTR: uncharacterized protein YP_004658673.1 PFAM: TonB-dependent Receptor Plug Domain; KEGG: sli:Slin_2297 hypothetical protein; SPTR: uncharacterized protein YP_004658674.1 COGs: COG2217 Cation transport ATPase; InterPro IPR008250:IPR005834; KEGG: dfe:Dfer_5325 copper-exporting ATPase; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Copper-exporting ATPase YP_004658675.1 PFAM: E1-E2 ATPase; Heavy-metal-associated domain; metal-binding domain of cation transport ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: sli:Slin_1483 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004658676.1 InterPro IPR004714; KEGG: dfe:Dfer_5324 cytochrome oxidase maturation protein, cbb3-type; PFAM: Cytochrome oxidase maturation protein cbb3-type; SPTR: Cytochrome oxidase maturation protein, cbb3-type; TIGRFAM: Cytochrome oxidase maturation protein cbb3-type YP_004658677.1 PFAM: Cytochrome oxidase maturation protein cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; COGs: COG3278 Cbb3-type cytochrome oxidase subunit 1; InterPro IPR004677:IPR003468:IPR000883; KEGG: dfe:Dfer_5323 bifunctional cbb3-type cytochrome c oxidase subunit I/II; PFAM: Cytochrome C oxidase, monohaem subunit/FixO; Cytochrome c oxidase, subunit I; SPTR: Cytochrome c oxidase, cbb3-type, subunit I; TIGRFAM: Cytochrome c oxidase cbb3-type, subunit I; Cytochrome C oxidase, monohaem subunit/FixO YP_004658678.1 PFAM: Cytochrome C oxidase, mono-heme subunit/FixO; Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; cytochrome c oxidase, cbb3-type, subunit I; InterPro IPR003088; KEGG: dfe:Dfer_5322 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I YP_004658679.1 PFAM: Cytochrome c; Cbb3-type cytochrome oxidase component FixQ; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; COGs: COG0348 Polyferredoxin; InterPro IPR014116:IPR001450; KEGG: dfe:Dfer_5321 cytochrome c oxidase accessory protein CcoG; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: Cytochrome c oxidase accessory protein CcoG; TIGRFAM: Cytochrome c oxidase cbb3 type, accessory protein FixG YP_004658680.1 PFAM: Ubp3 associated protein Bre5; TIGRFAM: cytochrome c oxidase accessory protein FixG; KEGG: dfe:Dfer_5320 hypothetical protein; SPTR: uncharacterized protein YP_004658681.1 PFAM: FixH; COGs: COG2836 conserved hypothetical protein; KEGG: cly:Celly_2055 integral membrane protein; SPTR: uncharacterized protein YP_004658682.1 COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR006638:IPR004558:IPR007197:IPR010723; KEGG: dfe:Dfer_5318 coproporphyrinogen III oxidase; PFAM: HemN, C-terminal; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN YP_004658683.1 PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR000014:IPR003661:IPR003594:IPR013767; KEGG: dfe:Dfer_5317 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; SPTR: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS YP_004658684.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR001789:IPR000595:IPR001808; KEGG: dfe:Dfer_5316 transcriptional regulator, Crp/Fnr family; PFAM: Signal transduction response regulator, receiver region; Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: Signal transduction response regulator, receiver region; Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SPTR: Transcriptional regulator, Crp/Fnr family YP_004658685.1 PFAM: Bacterial regulatory proteins, crp family; Response regulator receiver domain; Cyclic nucleotide-binding domain; COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_4779 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related YP_004658686.1 PFAM: ABC transporter; KEGG: sli:Slin_4259 hypothetical protein; SPTR: uncharacterized protein YP_004658687.1 COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; HAMAP: Glutaminyl-tRNA synthetase; InterPro IPR004514:IPR020058:IPR020059; KEGG: dfe:Dfer_2503 glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; PRIAM: Glutamine--tRNA ligase; SPTR: Glutaminyl-tRNA synthetase; TIGRFAM: Glutaminyl-tRNA synthetase, class Ic YP_004658688.1 PFAM: tRNA synthetases class I (E and Q), catalytic domain; tRNA synthetases class I (E and Q), anti-codon binding domain; TIGRFAM: glutaminyl-tRNA synthetase YP_004658689.1 COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: sli:Slin_1005 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; PFAM: 6-pyruvoyl tetrahydropterin synthase-related; SPTR: uncharacterized protein YP_004658690.1 PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: 6-pyruvoyl tetrahydropterin synthase/QueD family protein; COGs: COG0302 GTP cyclohydrolase I; HAMAP: GTP cyclohydrolase I; InterPro IPR001474:IPR020602; KEGG: dfe:Dfer_0468 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; PRIAM: GTP cyclohydrolase I; SPTR: GTP cyclohydrolase 1 1; TIGRFAM: GTP cyclohydrolase I YP_004658691.1 PFAM: GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; InterPro IPR019734:IPR001440:IPR013105; KEGG: sli:Slin_3125 hypothetical protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein YP_004658692.1 KEGG: sli:Slin_3425 hypothetical protein; SPTR: uncharacterized protein YP_004658693.1 PFAM: Protein of unknown function (DUF820); KEGG: dfe:Dfer_2654 transcription elongation factor; SPTR: Transcription elongation factor YP_004658694.1 PFAM: Transcription elongation factor, GreA/GreB, C-term; COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: dfe:Dfer_0240 aldo/keto reductase; PFAM: Aldo/keto reductase; PRIAM: Aryl-alcohol dehydrogenase (NADP(+)); SPTR: Aldo/keto reductase YP_004658695.1 PFAM: Aldo/keto reductase; COGs: COG2135 conserved hypothetical protein; InterPro IPR003738; KEGG: sli:Slin_1581 hypothetical protein; PFAM: Protein of unknown function DUF159; SPTR: uncharacterized protein YP_004658696.1 PFAM: Uncharacterised ACR, COG2135; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); KEGG: dfe:Dfer_0244 alpha/beta hydrolase fold protein; SPTR: Alpha/beta hydrolase fold protein YP_004658697.1 PFAM: Prolyl oligopeptidase; COGs: COG3876 conserved hypothetical protein; InterPro IPR008302; KEGG: sli:Slin_0923 hypothetical protein; PFAM: Uncharacterised conserved protein UCP016719; SPTR: uncharacterized protein YP_004658698.1 PFAM: Protein of unknown function (DUF1343); COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR014036; KEGG: phe:Phep_3861 regulatory protein DeoR; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal; SPTR: transcriptional Regulator, DeoR family YP_004658699.1 PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain; COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550:IPR000644:IPR005170; KEGG: sli:Slin_1467 hypothetical protein; PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated region; SPTR: uncharacterized protein YP_004658700.1 PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain; InterPro IPR000086; KEGG: sli:Slin_1466 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase YP_004658701.1 PFAM: NUDIX domain; COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: dol:Dole_2925 N-6 DNA methylase; PFAM: DNA methylase, adenine-specific; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: N-6 DNA methylase YP_004658702.1 PFAM: N-6 DNA Methylase; HsdM N-terminal domain; COGs: COG4804 conserved hypothetical protein; InterPro IPR009362; KEGG: bhl:Bache_1818 hypothetical protein; PFAM: Protein of unknown function DUF1016; SPTR: uncharacterized protein YP_004658703.1 PFAM: Protein of unknown function (DUF1016); COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: syn:slr6097 type I site-specific deoxyribonuclease; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Restriction modification system DNA specificity domain YP_004658704.1 PFAM: Type I restriction modification DNA specificity domain; COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014001:IPR004473:IPR007409:IPR006935; KEGG: dol:Dole_2927 HsdR family type I site-specific deoxyribonuclease; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; SPTR: Type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit YP_004658705.1 PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; COGs: COG1451 metal-dependent hydrolase; InterPro IPR002725; KEGG: dol:Dole_2928 hypothetical protein; PFAM: Protein of unknown function DUF45; SPTR: uncharacterized protein YP_004658706.1 PFAM: Protein of unknown function DUF45; KEGG: sli:Slin_6082 hypothetical protein; SPTR: uncharacterized protein YP_004658707.1 COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: sli:Slin_6081 glycoside hydrolase 43; PFAM: Glycoside hydrolase, family 43; SPTR: Glycoside hydrolase 43 YP_004658708.1 PFAM: Glycosyl hydrolases family 43; InterPro IPR000835; KEGG: sli:Slin_4547 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family YP_004658709.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: sli:Slin_4546 ABC transporter; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein YP_004658710.1 PFAM: ABC transporter; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR000089; KEGG: sli:Slin_4545 secretion protein HlyD; PFAM: Biotin/lipoyl attachment; SPTR: Secretion protein HlyD family protein YP_004658711.1 PFAM: HlyD family secretion protein; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: chu:CHU_2646 ABC transporter permease; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: ABC transporter, permease component YP_004658712.1 PFAM: Predicted permease; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_4543 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein YP_004658713.1 PFAM: Outer membrane efflux protein; Prodigal; This gene is disrupted by insertion of repetitive element; manually curated YP_004658714.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase; KEGG: amr:AM1_5006 IS4 family transposase; SPTR: ISPg2, transposase YP_004658716.1 COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: dfe:Dfer_1352 AAA ATPase; SMART: ATPase, AAA+ type, core; SPTR: AAA ATPase YP_004658717.1 COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: cao:Celal_2798 transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase YP_004658718.1 PFAM: Transposase; KEGG: dfe:Dfer_4027 hypothetical protein; SPTR: uncharacterized protein YP_004658720.1 KEGG: phe:Phep_0729 hypothetical protein; SPTR: uncharacterized protein YP_004658721.1 COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR000192; KEGG: phe:Phep_1563 cysteine desulfurase IscS; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Cysteine desulfurase; SPTR: Cysteine desulfurase YP_004658722.1 PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase NifS; COGs: COG1247 Sortase and related acyltransferase; InterPro IPR000182; KEGG: dfe:Dfer_2457 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase YP_004658723.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG3871 Uncharacterized stress protein (general stress protein 26); InterPro IPR011576; KEGG: chu:CHU_0468 general stress protein; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; SPTR: General stress protein YP_004658724.1 PFAM: Pyridoxamine 5'-phosphate oxidase; COGs: COG1410 Methionine synthase I cobalamin-binding domain; InterProIPR011822:IPR003726:IPR000489:IPR003759:IPR 006158:IPR004223; KEGG: dfe:Dfer_2804 methionine synthase; PFAM: Homocysteine S-methyltransferase; Dihydropteroate synthase, DHPS; Methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; Vitamin B12 dependent methionine synthase, activation region; PRIAM: Methionine synthase; SPTR: Methionine synthase; TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase YP_004658725.1 PFAM: Pterin binding enzyme; Vitamin B12 dependent methionine synthase, activation domain; B12 binding domain; Homocysteine S-methyltransferase; TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; KEGG: sli:Slin_0752 hypothetical protein; SPTR: uncharacterized protein YP_004658726.1 KEGG: mtt:Ftrac_0101 hypothetical protein; SPTR: uncharacterized protein YP_004658727.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR008816:IPR006665; KEGG: rmr:Rmar_0728 OmpA/MotB domain-containing protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Rickettsia 17kDa surface antigen; SPTR: OmpA/MotB domain protein YP_004658728.1 PFAM: OmpA family; COGs: COG1522 Transcriptional regulators; InterPro IPR019888:IPR019887; KEGG: dfe:Dfer_2805 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type; SPTR: Transcriptional regulator, AsnC family YP_004658729.1 PFAM: Sugar-specific transcriptional regulator TrmB; AsnC family YP_004658730.1 COGs: COG2509 Uncharacterized FAD-dependent dehydrogenase; InterPro IPR013027; KEGG: sli:Slin_1023 FAD dependent oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: FAD dependent oxidoreductase YP_004658731.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; InterPro IPR000086; KEGG: sli:Slin_1022 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase YP_004658732.1 PFAM: NUDIX domain; KEGG: dfe:Dfer_4967 hypothetical protein; SPTR: uncharacterized protein YP_004658733.1 PFAM: Protein of unknown function (DUF2723); COGs: COG2363 Uncharacterized small membrane protein; InterPro IPR006696; KEGG: dfe:Dfer_2013 protein of unknown function DUF423; PFAM: Protein of unknown function DUF423; SPTR: uncharacterized protein YP_004658734.1 PFAM: Protein of unknown function (DUF423); COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: dfe:Dfer_2012 ADP-heptose:LPS heptosyltransferase-like protein; PFAM: Glycosyl transferase, family 9; SPTR: ADP-heptose:LPS heptosyltransferase-like protein YP_004658735.1 PFAM: Glycosyltransferase 9 (heptosyltransferase); COGs: COG0305 Replicative DNA helicase; InterPro IPR007692:IPR007693:IPR007694; KEGG: sli:Slin_1916 replicative DNA helicase; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; SPTR: Replicative DNA helicase; TIGRFAM: DNA helicase, DnaB type YP_004658736.1 PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase; KEGG: sli:Slin_0008 hypothetical protein; SPTR: uncharacterized protein YP_004658737.1 PFAM: Protein of unknown function (DUF3108); COGs: COG4324 aminopeptidase; InterPro IPR014553; KEGG: sli:Slin_0009 aminopeptidase; PFAM: aminopeptidase; SPTR: Aminopeptidase YP_004658738.1 PFAM: Predicted aminopeptidase (DUF2265); COGs: COG2021 Homoserine acetyltransferase; InterPro IPR006296:IPR000073; KEGG: dfe:Dfer_2669 homoserine O-acetyltransferase; PFAM: Alpha/beta hydrolase fold-1; PRIAM: Homoserine O-acetyltransferase; SPTR: Homoserine O-acetyltransferase; TIGRFAM: Homoserine O-acetyltransferase YP_004658739.1 PFAM: alpha/beta hydrolase fold; TIGRFAM: homoserine O-acetyltransferase; InterPro IPR007922; KEGG: dfe:Dfer_2709 protein of unknown function DUF721; PFAM: Protein of unknown function DUF721; SPTR: uncharacterized protein YP_004658740.1 PFAM: Protein of unknown function (DUF721); COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR003593:IPR004176:IPR003959:IPR001943:IPR 013093:IPR019489; KEGG: dfe:Dfer_5019 ATPase AAA-2 domain protein; PFAM: ATPase associated with various cellular activities, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; UvrB/UvrC protein; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATPase AAA-2 domain protein YP_004658741.1 PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase associated with various cellular activities (AAA); UvrB/uvrC motif; InterPro IPR014985; KEGG: sli:Slin_1369 WbqC-like family protein; PFAM: WbqC-like protein family; SPTR: WbqC-like family protein YP_004658742.1 PFAM: WbqC-like protein family; COGs: COG1402 Uncharacterized protein amidase; InterPro IPR003785; KEGG: zpr:ZPR_4313 creatinine amidohydrolase; PFAM: Creatininase; SPTR: Creatinine amidohydrolase YP_004658743.1 PFAM: Creatinine amidohydrolase; COGs: COG1560 Lauroyl/myristoyl acyltransferase; InterPro IPR004960; KEGG: sli:Slin_1368 lipid A biosynthesis acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase; SPTR: Lipid A biosynthesis acyltransferase YP_004658744.1 PFAM: Bacterial lipid A biosynthesis acyltransferase; Prodigal; manually curated YP_004658745.1 PFAM: Acetyltransferase (GNAT) family YP_004658746.1 InterPro IPR001387:IPR019759; KEGG: mtt:Ftrac_3516 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; Peptidase S24/S26A/S26B, conserved region; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix domain protein YP_004658747.1 PFAM: Helix-turn-helix; COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase); InterPro IPR019759; KEGG: syf:Synpcc7942_1549 SOS mutagenesis protein UmuD; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: DNA polymerase V YP_004658748.1 PFAM: Peptidase S24-like; COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; InterPro IPR001126; KEGG: chu:CHU_1492 DNA repair nucleotidyltransferase/DNA polymerase; PFAM: DNA-repair protein, UmuC-like; PRIAM: DNA-directed DNA polymerase; SPTR: Nucleotidyltransferase/DNA polymerase involved in DNA repair YP_004658749.1 PFAM: impB/mucB/samB family C-terminal; impB/mucB/samB family YP_004658750.1 Prodigal; manually curated YP_004658751.1 Prodigal; manually curated YP_004658752.1 Prodigal; manually curated YP_004658753.1 PFAM: Response regulator receiver domain; COGs: COG0642 Signal transduction histidine kinase; InterProIPR001610:IPR000014:IPR003661:IPR003594:IPR 013655:IPR013656; KEGG: sli:Slin_0618 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold-4; PAS fold-3; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS YP_004658754.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: sus:Acid_4818 oxidoreductase domain-containing protein; PFAM: Oxidoreductase, N-terminal; SPTR: uncharacterized protein YP_004658755.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: cao:Celal_2798 transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase YP_004658756.1 PFAM: Transposase; KEGG: dfe:Dfer_4027 hypothetical protein; SPTR: uncharacterized protein YP_004658759.1 PFAM: Fumarylacetoacetate (FAA) hydrolase; KEGG: dfe:Dfer_5077 hypothetical protein; SPTR: uncharacterized protein YP_004658760.1 PFAM: Domain of unknown function (DUF1083); COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834; KEGG: cpi:Cpin_1727 haloacid dehalogenase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Haloacid dehalogenase domain protein hydrolase YP_004658761.1 PFAM: haloacid dehalogenase-like hydrolase; InterPro IPR012910; KEGG: dfe:Dfer_4830 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug YP_004658762.1 PFAM: TonB-dependent Receptor Plug Domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060; KEGG: sli:Slin_4241 AraC family transcriptional regulator; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004658763.1 COGs: COG2128 conserved hypothetical protein; InterPro IPR004675:IPR003779; KEGG: sli:Slin_6223 alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; SPTR: Alkylhydroperoxidase like protein, AhpD family; TIGRFAM: Alkylhydroperoxidase AhpD core YP_004658764.1 PFAM: Carboxymuconolactone decarboxylase; TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase AhpD family core domain; InterPro IPR011576; KEGG: sli:Slin_6225 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; SPTR: Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein YP_004658765.1 PFAM: Pyridoxamine 5'-phosphate oxidase; COGs: COG3618 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: sli:Slin_0412 amidohydrolase 2; PFAM: Amidohydrolase 2; SPTR: Amidohydrolase 2 YP_004658766.1 PFAM: Amidohydrolase; InterPro IPR006652; KEGG: dfe:Dfer_4451 kelch repeat-containing protein; PFAM: Kelch repeat type 1; SMART: Kelch repeat type 1; SPTR: Kelch repeat-containing protein YP_004658767.1 PFAM: Kelch motif YP_004658768.1 COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sli:Slin_2987 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase YP_004658769.1 PFAM: Beta-lactamase; Domain of unknown function (DUF3471) YP_004658770.1 KEGG: sli:Slin_4467 hypothetical protein; SPTR: uncharacterized protein YP_004658771.1 KEGG: sli:Slin_3038 hypothetical protein; SPTR: uncharacterized protein YP_004658772.1 COGs: COG0327 conserved hypothetical protein; KEGG: sli:Slin_2404 hypothetical protein; SPTR: uncharacterized protein YP_004658773.1 PFAM: NIF3 (NGG1p interacting factor 3); InterPro IPR004360; KEGG: sli:Slin_0926 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: uncharacterized protein YP_004658774.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG1820 N-acetylglucosamine-6-phosphate deacetylase; InterPro IPR003764:IPR006680; KEGG: fjo:Fjoh_3974 N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase 1; PRIAM: N-acetylglucosamine-6-phosphate deacetylase; SPTR: Candidate N-acetylglucosamine-6-phosphate deacetylase; Carbohydrate esterase 9; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase YP_004658775.1 PFAM: Amidohydrolase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: tra:Trad_2126 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase YP_004658776.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG0656 Aldo/keto reductase related to diketogulonate reductase; InterPro IPR001395; KEGG: sli:Slin_6248 2,5-didehydrogluconate reductase; PFAM: Aldo/keto reductase; PRIAM: Methylglyoxal reductase (NADPH-dependent); SPTR: 2,5-didehydrogluconate reductase YP_004658777.1 PFAM: Aldo/keto reductase; COGs: COG4784 Zn-dependent protease; InterPro IPR001915; KEGG: sli:Slin_4877 peptidase M48 Ste24p; PFAM: Peptidase M48, Ste24p; SPTR: Peptidase M48 Ste24p; manually curated YP_004658778.1 PFAM: Peptidase M48; COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: sli:Slin_2383 DNA protecting protein DprA; PFAM: DNA recombination-mediator protein A; SPTR: DNA protecting protein DprA; TIGRFAM: DNA recombination-mediator protein A YP_004658779.1 PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA; COGs: COG0069 Glutamate synthase domain 2; InterPro IPR002932; KEGG: dfe:Dfer_5008 ferredoxin-dependent glutamate synthase; PFAM: Glutamate synthase, central-C; PRIAM: Glutamate synthase (NADPH); SPTR: Ferredoxin-dependent glutamate synthase YP_004658780.1 PFAM: Conserved region in glutamate synthase; COGs: COG2367 Beta-lactamase class A; KEGG: fnu:FN1584 beta-lactamase; SPTR: Possible beta-lactamase class A YP_004658781.1 PFAM: D-alanyl-D-alanine carboxypeptidase YP_004658782.1 Prodigal; manually curated YP_004658783.1 PFAM: Endonuclease/Exonuclease/phosphatase; KEGG: sli:Slin_3038 hypothetical protein; SPTR: uncharacterized protein YP_004658784.1 COGs: COG1866 Phosphoenolpyruvate carboxykinase (ATP); HAMAP: Phosphoenolpyruvate carboxykinase [ATP]; InterPro IPR001272; KEGG: rmr:Rmar_1197 phosphoenolpyruvate carboxykinase (ATP); PFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising; SPTR: Phosphoenolpyruvate carboxykinase [ATP]; TIGRFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising YP_004658785.1 PFAM: Phosphoenolpyruvate carboxykinase; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP); COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: cpi:Cpin_2227 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein YP_004658786.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG1585 Membrane protein implicated in regulation of membrane protease activity; InterPro IPR002810; KEGG: dfe:Dfer_3005 protein of unknown function DUF107; PFAM: Nodulation efficiency, NfeD; SPTR: uncharacterized protein YP_004658787.1 PFAM: NfeD-like; COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: dfe:Dfer_3004 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: Band 7 protein YP_004658788.1 PFAM: SPFH domain / Band 7 family; COGs: COG1058 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; InterPro IPR008135:IPR008136:IPR001453; KEGG: sli:Slin_1357 competence/damage-inducible protein CinA; PFAM: CinA, C-terminal; Molybdopterin binding; SPTR: CinA-like protein; TIGRFAM: Competence-induced protein CinA; CinA, C-terminal YP_004658789.1 PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain; COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR000089:IPR004167:IPR001078; KEGG: sli:Slin_1356 catalytic domain of components of various dehydrogenase complexes; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; PRIAM: Dihydrolipoyllysine-residue succinyltransferase; SPTR: Catalytic domain of components of various dehydrogenase complexes YP_004658790.1 PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: mea:Mex_1p3295 arylesterase (alpha/beta hydrolase fold), haloperoxidase; PFAM: Alpha/beta hydrolase fold-1; PRIAM: Arylesterase; SPTR: Arylesterase (Alpha/beta hydrolase fold), haloperoxidase YP_004658791.1 PFAM: alpha/beta hydrolase fold; COGs: COG0456 Acetyltransferase; InterPro IPR000182; KEGG: mac:MA3954 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase YP_004658792.1 PFAM: Acetyltransferase (GNAT) family; KEGG: sli:Slin_5715 hypothetical protein; SPTR: uncharacterized protein YP_004658793.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: lby:Lbys_0414 transcriptional regulator, crp/fnr family; PFAM: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family YP_004658794.1 PFAM: Cyclic nucleotide-binding domain; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: lby:Lbys_0110 short-chain dehydrogenase/reductase sdr; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR YP_004658795.1 PFAM: short chain dehydrogenase; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: lby:Lbys_0111 transcriptional regulator, crp/fnr family; PFAM: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family YP_004658796.1 PFAM: Cyclic nucleotide-binding domain; KEGG: lbf:LBF_2484 hypothetical protein; SPTR: uncharacterized protein YP_004658797.1 COGs: COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain; KEGG: dfe:Dfer_5786 hypothetical protein; SPTR: uncharacterized protein YP_004658798.1 InterPro IPR013216; KEGG: dfe:Dfer_0228 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11 YP_004658799.1 PFAM: Methyltransferase domain; InterPro IPR009474; KEGG: dfe:Dfer_5785 protein of unknown function DUF1094; PFAM: Uncharacterised protein family UPF0403; SPTR: uncharacterized protein YP_004658800.1 PFAM: Protein of unknown function (DUF1094); COGs: COG2151 metal-sulfur cluster biosynthetic protein; InterPro IPR014291:IPR002744; KEGG: dfe:Dfer_5784 FeS assembly SUF system protein; PFAM: Protein of unknown function DUF59; SPTR: FeS assembly SUF system protein; TIGRFAM: SUF system FeS cluster assembly associated YP_004658801.1 PFAM: Domain of unknown function DUF59; TIGRFAM: FeS assembly SUF system protein; COGs: COG2166 SufE protein probably involved in Fe-S center assembly; InterPro IPR003808; KEGG: sli:Slin_0163 Fe-S metabolism associated SufE; PFAM: Fe-S metabolism associated SufE; SPTR: Fe-S metabolism associated SufE YP_004658802.1 PFAM: Fe-S metabolism associated domain; InterPro IPR007712; KEGG: sli:Slin_0164 plasmid stabilization system; PFAM: Plasmid stabilisation system; SPTR: Plasmid stabilization system YP_004658803.1 PFAM: Plasmid stabilisation system protein; KEGG: sli:Slin_0165 hypothetical protein; SPTR: uncharacterized protein YP_004658804.1 COGs: COG0520 Selenocysteine lyase; InterPro IPR010970:IPR000192; KEGG: dfe:Dfer_5780 cysteine desulfurase, SufS subfamily; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Selenocysteine lyase; SPTR: Cysteine desulfurase, SufS subfamily; TIGRFAM: Cysteine desulfurase, SufS YP_004658805.1 PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily; KEGG: dfe:Dfer_3935 hypothetical protein; SPTR: uncharacterized protein YP_004658806.1 COGs: COG0359 Ribosomal protein L9; HAMAP: Ribosomal protein L9, bacteria/chloroplast; InterPro IPR020594:IPR020070:IPR020069; KEGG: dfe:Dfer_2007 ribosomal protein L9; PFAM: Ribosomal protein L9, N-terminal; Ribosomal protein L9, C-terminal; SPTR: 50S ribosomal protein L9; TIGRFAM: Ribosomal protein L9, bacteria/chloroplast YP_004658807.1 PFAM: Ribosomal protein L9, N-terminal domain; Ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9; COGs: COG0238 Ribosomal protein S18; HAMAP: 30S ribosomal protein S18; InterPro IPR001648; KEGG: dfe:Dfer_2008 30S ribosomal protein S18; PFAM: Ribosomal protein S18; SPTR: 30S ribosomal protein S18; TIGRFAM: Ribosomal protein S18 YP_004658808.1 PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18; COGs: COG0360 Ribosomal protein S6; HAMAP: Ribosomal protein S6, bacterial-like; InterPro IPR020814:IPR000529; KEGG: dfe:Dfer_2009 30S ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like; SPTR: 30S ribosomal protein S6; TIGRFAM: Ribosomal protein S6 YP_004658809.1 PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6; COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR003953; KEGG: phe:Phep_2084 FAD dependent oxidoreductase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; SPTR: FAD dependent oxidoreductase YP_004658810.1 PFAM: FAD binding domain; COGs: COG2873 O-acetylhomoserine sulfhydrylase; InterPro IPR006235:IPR000277; KEGG: dfe:Dfer_1094 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; PRIAM: Cysteine synthase; SPTR: O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase YP_004658811.1 PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: OAH/OAS sulfhydrylase; COGs: COG3358 conserved hypothetical protein; InterPro IPR012467; KEGG: sli:Slin_4806 hypothetical protein; PFAM: Protein of unknown function DUF1684; SPTR: uncharacterized protein YP_004658812.1 PFAM: Protein of unknown function (DUF1684); KEGG: dfe:Dfer_2835 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_004658813.1 PFAM: AhpC/TSA family; COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: dfe:Dfer_4495 fatty acid hydroxylase; PFAM: Fatty acid hydroxylase; SPTR: Fatty acid hydroxylase YP_004658814.1 PFAM: Fatty acid hydroxylase superfamily; Prodigal; manually curated YP_004658815.1 PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein; KEGG: sli:Slin_1918 hypothetical protein; SPTR: uncharacterized protein YP_004658816.1 PFAM: Pregnancy-associated plasma protein-A; COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR003714; KEGG: dfe:Dfer_1072 PhoH family protein; PFAM: PhoH-like protein; SPTR: PhoH family protein YP_004658817.1 PFAM: PhoH-like protein; KEGG: ami:Amir_1954 LPXTG-motif cell wall anchor domain protein; SPTR: Predicted protein YP_004658818.1 KEGG: sli:Slin_5055 phosphoesterase PA-phosphatase related protein; SPTR: Phosphoesterase PA-phosphatase related protein YP_004658819.1 PFAM: PAP2 superfamily; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439; KEGG: sli:Slin_1762 ABC transporter; PFAM: ABC transporter-like; SPTR: ABC transporter related protein YP_004658820.1 PFAM: ABC transporter; KEGG: sli:Slin_1761 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004658821.1 KEGG: dfe:Dfer_2414 hypothetical protein; SPTR: uncharacterized protein YP_004658822.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683:IPR004104; KEGG: dfe:Dfer_1598 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; PRIAM: Glucose-fructose oxidoreductase; SPTR: Oxidoreductase domain protein YP_004658823.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR003593:IPR012763:IPR003959; KEGG: dfe:Dfer_4930 DNA polymerase III, subunits gamma and tau; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunit gamma/ tau YP_004658824.1 PFAM: ATPase associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, subunit gamma and tau; COGs: COG2258 conserved hypothetical protein; InterPro IPR005302; KEGG: sli:Slin_0265 MOSC domain containing protein; PFAM: Molybdenum cofactor sulfurase, C-terminal; SPTR: uncharacterized protein YP_004658825.1 PFAM: MOSC domain; COGs: COG3124 conserved hypothetical protein; InterPro IPR007431; KEGG: dfe:Dfer_1066 protein of unknown function DUF479; PFAM: Acyl carrier protein phosphodiesterase; SPTR: uncharacterized protein YP_004658826.1 PFAM: Protein of unknown function, DUF479; COGs: COG2131 Deoxycytidylate deaminase; InterPro IPR002125; KEGG: dfe:Dfer_1068 CMP/dCMP deaminase zinc-binding; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: CMP/dCMP deaminase zinc-binding YP_004658827.1 PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; KEGG: sli:Slin_4939 hypothetical protein; SPTR: uncharacterized protein YP_004658828.1 COGs: COG0684 Demethylmenaquinone methyltransferase; KEGG: sli:Slin_6192 demethylmenaquinone methyltransferase-like protein; SPTR: Demethylmenaquinone methyltransferase-like protein YP_004658829.1 PFAM: Demethylmenaquinone methyltransferase; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR006311:IPR013341:IPR013342; KEGG: sli:Slin_6193 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; PRIAM: Galactonate dehydratase; SPTR: Mandelate racemase/muconate lactonizing protein YP_004658830.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; KEGG: lby:Lbys_3432 hypothetical protein; SPTR: uncharacterized protein YP_004658831.1 KEGG: lby:Lbys_3432 hypothetical protein; SPTR: uncharacterized protein YP_004658832.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: sli:Slin_1730 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein YP_004658833.1 PFAM: OmpA family YP_004658834.1 COGs: COG0685 5 10-methylenetetrahydrofolate reductase; InterPro IPR004620:IPR003171; KEGG: sli:Slin_1800 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase; PRIAM: Methylenetetrahydrofolate reductase (NAD(P)H); SPTR: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase YP_004658835.1 PFAM: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase, prokaryotic form; COGs: COG0335 Ribosomal protein L19; HAMAP: Ribosomal protein L19; InterPro IPR001857; KEGG: sli:Slin_1454 ribosomal protein L19; PFAM: Ribosomal protein L19; SPTR: 50S ribosomal protein L19; TIGRFAM: Ribosomal protein L19 YP_004658836.1 PFAM: Ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type; COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: dfe:Dfer_5091 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase YP_004658837.1 PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; KEGG: dfe:Dfer_3820 hypothetical protein; SPTR: uncharacterized protein YP_004658838.1 KEGG: dfe:Dfer_3821 hypothetical protein; SPTR: uncharacterized protein YP_004658839.1 InterPro IPR013216; KEGG: sml:Smlt0631 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11 YP_004658840.1 PFAM: Methyltransferase domain; COGs: COG0703 Shikimate kinase; HAMAP: Shikimate kinase; InterPro IPR000623; KEGG: sli:Slin_2313 shikimate kinase; PFAM: Shikimate kinase; PRIAM: Shikimate kinase; SPTR: Shikimate kinase YP_004658841.1 PFAM: Shikimate kinase; KEGG: sli:Slin_2314 DoxX family protein; SPTR: DoxX family protein YP_004658842.1 KEGG: dfe:Dfer_3191 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004658844.1 InterPro IPR011630; KEGG: sli:Slin_2316 hypothetical protein; PFAM: Protein of unknown function DUF1599; SPTR: uncharacterized protein YP_004658845.1 PFAM: Domain of Unknown Function (DUF1599); COGs: COG0294 Dihydropteroate synthase; InterPro IPR006390:IPR000489; KEGG: psn:Pedsa_3680 dihydropteroate synthase; PFAM: Dihydropteroate synthase, DHPS; PRIAM: Dihydropteroate synthase; SPTR: Dihydropteroate synthase; TIGRFAM: Dihydropteroate synthase YP_004658846.1 PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase; COGs: COG2259 membrane protein; InterPro IPR011637; KEGG: dfe:Dfer_3051 DoxX family protein; PFAM: DoxX; SPTR: DoxX family protein YP_004658847.1 PFAM: DoxX; KEGG: cpi:Cpin_5543 alpha-L-fucosidase; PRIAM: Alpha-L-fucosidase; SPTR: Alpha-L-fucosidase YP_004658848.1 COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro IPR003821:IPR013512:IPR013644; KEGG: sli:Slin_5921 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase; SPTR: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_004658849.1 PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR001478:IPR004387:IPR008915; KEGG: dfe:Dfer_4131 membrane-associated zinc metalloprotease; PFAM: Peptidase M50; PDZ/DHR/GLGF; SPTR: Membrane-associated zinc metalloprotease; TIGRFAM: Peptidase M50, membrane-associated zinc metallopeptidase YP_004658850.1 PFAM: Peptidase M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP; KEGG: dfe:Dfer_4130 hypothetical protein; SPTR: uncharacterized protein YP_004658851.1 HAMAP: Ribosomal protein L35; InterPro IPR001706; KEGG: sli:Slin_2217 ribosomal protein L35; PFAM: Ribosomal protein L35; SPTR: 50S ribosomal protein L35; TIGRFAM: Ribosomal protein L35 YP_004658852.1 PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35; COGs: COG0292 Ribosomal protein L20; HAMAP: Ribosomal protein L20; InterPro IPR005813; KEGG: dfe:Dfer_1224 ribosomal protein L20; PFAM: Ribosomal protein L20; SPTR: 50S ribosomal protein L20; TIGRFAM: Ribosomal protein L20 YP_004658853.1 PFAM: Ribosomal protein L20; TIGRFAM: ribosomal protein L20; KEGG: sli:Slin_1510 hypothetical protein; SPTR: uncharacterized protein YP_004658854.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: fjo:Fjoh_0190 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; manually curated YP_004658855.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR000531; KEGG: dfe:Dfer_3109 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor YP_004658856.1 PFAM: TonB-dependent Receptor Plug Domain; InterPro IPR006121; KEGG: dfe:Dfer_3112 heavy metal transport/detoxification protein; PFAM: Heavy metal transport/detoxification protein; SPTR: Heavy metal transport/detoxification protein YP_004658857.1 PFAM: Heavy-metal-associated domain; KEGG: cpi:Cpin_5819 hypothetical protein; SPTR: uncharacterized protein YP_004658858.1 PFAM: esterase; COGs: COG1278 Cold shock protein; InterPro IPR011129:IPR002059; KEGG: dfe:Dfer_0895 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding domain protein YP_004658859.1 PFAM: 'Cold-shock' DNA-binding domain YP_004658860.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR003594; KEGG: sli:Slin_1040 response regulator receiver sensor signal transduction histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; SPTR: Response regulator receiver sensor signal transduction histidine kinase YP_004658861.1 PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR018060:IPR000005; KEGG: sli:Slin_2666 AraC family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Helix-turn-helix, AraC type; SMART: Signal transduction response regulator, receiver region; Helix-turn-helix, AraC domain; SPTR: Two component transcriptional regulator, AraC family YP_004658862.1 PFAM: Response regulator receiver domain; Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR012506; KEGG: mtt:Ftrac_1144 YhhN family protein; PFAM: YhhN-like; SPTR: uncharacterized protein YP_004658863.1 PFAM: YhhN-like protein; InterPro IPR017515:IPR004360; KEGG: sli:Slin_5823 methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Methylmalonyl-CoA epimerase; TIGRFAM: Methylmalonyl-CoA epimerase YP_004658864.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase; InterPro IPR007828; KEGG: sli:Slin_5242 inositol oxygenase; PFAM: Protein of unknown function DUF706; PRIAM: Inositol oxygenase; SPTR: Inositol oxygenase YP_004658865.1 PFAM: Family of unknown function (DUF706); COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: dfe:Dfer_5702 transcriptional regulator, LacI family; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family YP_004658866.1 PFAM: Bacterial regulatory proteins, lacI family; family; COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: dfe:Dfer_2637 fatty acid hydroxylase; PFAM: Fatty acid hydroxylase; SPTR: Fatty acid hydroxylase YP_004658867.1 PFAM: Fatty acid hydroxylase superfamily; COGs: COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; InterPro IPR000031; KEGG: sli:Slin_5995 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: Phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_004658868.1 PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein; InterPro IPR002482:IPR018392; KEGG: sli:Slin_5996 peptidoglycan-binding lysin domain protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Peptidoglycan-binding lysin domain protein YP_004658869.1 PFAM: LysM domain; COGs: COG2908 conserved hypothetical protein; InterPro IPR004843; KEGG: sli:Slin_5686 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase YP_004658870.1 PFAM: Calcineurin-like phosphoesterase; COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); InterPro IPR020019:IPR001451; KEGG: sli:Slin_5687 sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; SPTR: Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; TIGRFAM: Sialic acid O-acyltransferase, NeuD YP_004658871.1 TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; COGs: COG1195 Recombinational DNA repair ATPase (RecF pathway); HAMAP: DNA replication and repair protein recF; InterPro IPR001238:IPR003395; KEGG: dfe:Dfer_3886 DNA replication and repair protein RecF; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: DNA replication and repair protein recF; TIGRFAM: DNA-binding, RecF YP_004658872.1 PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: recF protein; COGs: COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type alpha subunit; InterPro IPR017597:IPR001017; KEGG: sli:Slin_5509 pyruvate dehydrogenase (acetyl-transferring) E1 component, subunit alpha; PFAM: Dehydrogenase, E1 component; PRIAM: Pyruvate dehydrogenase (acetyl-transferring); SPTR: Pyruvate dehydrogenase (Acetyl-transferring) E1 component, alpha subunit; TIGRFAM: Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y YP_004658873.1 PFAM: Dehydrogenase E1 component; TIGRFAM: pyruvate dehydrogenase E1 component, alpha subunit; COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: sli:Slin_5158 hypothetical protein; PFAM: Protein of unknown function DUF140; SPTR: uncharacterized protein YP_004658874.1 PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000835:IPR000600; KEGG: sli:Slin_3041 ROK family protein; PFAM: ROK; HTH transcriptional regulator, MarR; PRIAM: Glucokinase; SPTR: ROK family protein YP_004658875.1 PFAM: ROK family; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: lby:Lbys_2803 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004658876.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: lby:Lbys_2804 hypothetical protein; SPTR: uncharacterized protein YP_004658877.1 InterPro IPR014914; KEGG: sli:Slin_2003 RES domain protein; PFAM: RES; SPTR: RES domain protein YP_004658878.1 PFAM: RES domain; InterPro IPR000866; KEGG: dfe:Dfer_2065 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_004658879.1 PFAM: AhpC/TSA family; COGs: COG1895 conserved hypothetical protein related to C-terminal domain of eukaryotic chaperone SACSIN; InterPro IPR007842; KEGG: mja:MJ_0142 hypothetical protein; PFAM: HEPN; SPTR: UPF0332 protein MJ0142 YP_004658880.1 PFAM: HEPN domain; InterPro IPR002934; KEGG: sli:Slin_2850 DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase; SPTR: DNA polymerase beta domain protein region YP_004658881.1 PFAM: Nucleotidyltransferase domain; COGs: COG3127 ABC-type transport system involved in lysophospholipase L1 biosynthesis permease component; InterPro IPR003838; KEGG: phe:Phep_1597 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein YP_004658882.1 PFAM: Predicted permease; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_5709 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related YP_004658883.1 PFAM: ABC transporter; COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: dfe:Dfer_5710 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family YP_004658884.1 PFAM: GDSL-like Lipase/Acylhydrolase; InterPro IPR002860; KEGG: sli:Slin_1572 glycosyl hydrolase, BNR repeat-containing protein; PFAM: BNR repeat; SPTR: Glycosyl hydrolase, BNR repeat-containing protein YP_004658885.1 PFAM: BNR/Asp-box repeat; KEGG: chu:CHU_2294 hypothetical protein; SPTR: uncharacterized protein YP_004658886.1 COGs: COG2017 Galactose mutarotase; InterPro IPR008183; KEGG: cpi:Cpin_5592 aldose 1-epimerase; PFAM: Aldose 1-epimerase; SPTR: Aldose 1-epimerase YP_004658887.1 PFAM: Aldose 1-epimerase; InterPro IPR002223; KEGG: fbc:FB2170_08659 proteinase inhibitor I2, Kunitz metazoa; PFAM: Proteinase inhibitor I2, Kunitz metazoa; SMART: Proteinase inhibitor I2, Kunitz metazoa; SPTR: Proteinase inhibitor I2, Kunitz metazoa YP_004658888.1 PFAM: Kunitz/Bovine pancreatic trypsin inhibitor domain; COGs: COG3506 conserved hypothetical protein; InterPro IPR009784; KEGG: cbk:CLL_A1994 hypothetical protein; PFAM: Protein of unknown function DUF1349; SPTR: uncharacterized protein YP_004658889.1 PFAM: Protein of unknown function (DUF1349); COGs: COG2055 Malate/L-lactate dehydrogenase; InterPro IPR003767; KEGG: phe:Phep_3438 2,3-diketo-L-gulonate reductase; PFAM: Malate/L-lactate dehydrogenase; PRIAM: 3-dehydro-L-gulonate 2-dehydrogenase; SPTR: Malate/L-lactate dehydrogenase YP_004658890.1 PFAM: Malate/L-lactate dehydrogenase; COGs: COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin; InterPro IPR008775; KEGG: tau:Tola_1906 phytanoyl-CoA dioxygenase; PFAM: Phytanoyl-CoA dioxygenase; SPTR: phytanoyl-CoA dioxygenase YP_004658891.1 PFAM: Phytanoyl-CoA dioxygenase (PhyH); COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: fbc:FB2170_06925 transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator YP_004658892.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG0405 Gamma-glutamyltransferase; InterPro IPR000101; KEGG: dfe:Dfer_5278 gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase; PRIAM: Gamma-glutamyltransferase; SPTR: Gamma-glutamyltransferase YP_004658893.1 PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase; KEGG: met:M446_7061 hypothetical protein; SPTR: uncharacterized protein YP_004658894.1 TIGRFAM: TIGR02646 family protein; COGs: COG3950 ATP-binding protein involved in virulence; KEGG: met:M446_7060 hypothetical protein; SPTR: uncharacterized protein YP_004658895.1 PFAM: RecF/RecN/SMC N terminal domain; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073:IPR000383; KEGG: tsa:AciPR4_0063 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; Peptidase S15; SPTR: Alpha/beta hydrolase fold family hydrolase YP_004658896.1 PFAM: alpha/beta hydrolase fold; COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: sli:Slin_4966 hypothetical protein; PFAM: Protein of unknown function DUF58; SPTR: uncharacterized protein YP_004658897.1 PFAM: Protein of unknown function DUF58; COGs: COG0009 translation factor (SUA5); InterPro IPR004388:IPR006070; KEGG: sli:Slin_1614 SUA5/YciO/YrdC/YwlC family protein; PFAM: Sua5/YciO/YrdC, N-terminal; SPTR: Sua5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC YP_004658898.1 PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: dfe:Dfer_5016 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2 YP_004658899.1 PFAM: Glycosyl transferase 2; COGs: COG1295 membrane protein; InterPro IPR017039:IPR004664; KEGG: dfe:Dfer_5015 ribonuclease BN; PFAM: Ribonuclease BN-related; SPTR: Ribonuclease BN; TIGRFAM: Ribonuclease BN YP_004658900.1 PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN); COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_1720 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug YP_004658901.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG0824 thioesterase; InterPro IPR006684:IPR006683; KEGG: dfe:Dfer_5014 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein; TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase YP_004658902.1 PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family; COGs: COG1559 periplasmic solute-binding protein; InterPro IPR003770; KEGG: sli:Slin_1618 aminodeoxychorismate lyase; PFAM: Uncharacterised protein family YceG-like; SPTR: Aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family YceG-like YP_004658903.1 PFAM: YceG-like family; TIGRFAM: conserved hypothetical protein, YceG family; KEGG: dfe:Dfer_2763 hypothetical protein; SPTR: uncharacterized protein YP_004658904.1 PFAM: DinB family; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: msv:Mesil_2652 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein YP_004658905.1 PFAM: alpha/beta hydrolase fold YP_004658906.1 COGs: COG3511 Phospholipase C; InterPro IPR006311:IPR017767:IPR007312:IPR008475; KEGG: cpi:Cpin_1336 phospholipase C, phosphocholine-specific; PFAM: Phosphoesterase; Protein of unknown function DUF756; PRIAM: Phospholipase C; SPTR: Phospholipase C, phosphocholine-specific; TIGRFAM: Phospholipase C, phosphocholine-specific; Twin-arginine translocation pathway, signal sequence YP_004658907.1 PFAM: Phosphoesterase; Domain of unknown function (DUF756); TIGRFAM: phospholipase C, phosphocholine-specific, Pseudomonas-type; InterPro IPR003158; KEGG: aba:Acid345_2503 hypothetical protein; PFAM: Photosynthetic reaction centre, cytochrome c subunit; SPTR: uncharacterized protein YP_004658908.1 PFAM: Photosynthetic reaction centre cytochrome C subunit; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307:IPR011418; KEGG: sli:Slin_3432 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; AP endonuclease, family 2, C-terminal; SPTR: Xylose isomerase domain protein TIM barrel YP_004658909.1 PFAM: AP endonuclease 2 C terminus; Xylose isomerase-like TIM barrel; Prodigal; manually curated YP_004658910.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; InterPro IPR011701; KEGG: dfe:Dfer_5059 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004658911.1 PFAM: Major Facilitator Superfamily; InterPro IPR019734:IPR001440; KEGG: sli:Slin_3025 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein YP_004658912.1 PFAM: Tetratricopeptide repeat; KEGG: sli:Slin_5740 hypothetical protein; SPTR: uncharacterized protein YP_004658913.1 COGs: COG0580 Glycerol uptake facilitator and related permease (Major Intrinsic Protein Family); InterPro IPR000425; KEGG: sli:Slin_5936 major intrinsic protein; PFAM: Major intrinsic protein; SPTR: Major intrinsic protein YP_004658914.1 PFAM: Major intrinsic protein; TIGRFAM: MIP family channel proteins; COGs: COG4993 Glucose dehydrogenase; InterProIPR018391:IPR019551:IPR002372:IPR019556:IPR 003088; KEGG: dfe:Dfer_4957 pyrrolo-quinoline quinone; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal; Cytochrome c, class I; PRIAM: Quinoprotein glucose dehydrogenase; SPTR: Pyrrolo-quinoline quinone YP_004658915.1 PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus; Cytochrome c; PQQ enzyme repeat; COGs: COG0015 Adenylosuccinate lyase; InterPro IPR004769:IPR000362:IPR013539; KEGG: sli:Slin_5955 adenylosuccinate lyase; PFAM: Adenylosuccinate lyase C-terminal; Fumarate lyase; PRIAM: Adenylosuccinate lyase; SPTR: Adenylosuccinate lyase; TIGRFAM: Adenylosuccinate lyase YP_004658916.1 PFAM: Lyase; Adenylosuccinate lyase C-terminal; TIGRFAM: adenylosuccinate lyase; COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: mtt:Ftrac_1361 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PRIAM: Nitrilase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004658917.1 PFAM: Carbon-nitrogen hydrolase; COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterPro IPR005814; KEGG: dfe:Dfer_3092 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: Aminotransferase class-III YP_004658918.1 PFAM: Aminotransferase class-III; COGs: COG0628 permease; InterPro IPR002549; KEGG: cpi:Cpin_6357 hypothetical protein; PFAM: Uncharacterised protein family UPF0118; SPTR: Transport protein YP_004658919.1 PFAM: Domain of unknown function DUF20; COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873; KEGG: chu:CHU_3595 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: Long-chain-fatty-acid--CoA ligase (Acyl-CoA synthetase) YP_004658920.1 PFAM: AMP-binding enzyme; COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011110:IPR011123:IPR011712:IPR003594; KEGG: sli:Slin_5256 histidine kinase; PFAM: Two component regulator three Y; Two component regulator propeller; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; ATP-binding region, ATPase-like; SPTR: Histidine kinase YP_004658921.1 PFAM: Y_Y_Y domain; Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Two component regulator propeller; COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: dfe:Dfer_0193 glycoside hydrolase 43; PFAM: Glycoside hydrolase, family 43; SPTR: Glycoside hydrolase 43 YP_004658922.1 PFAM: Glycosyl hydrolases family 43; COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: dfe:Dfer_2712 peptidase U61 LD-carboxypeptidase A; PFAM: Peptidase S66, LD-carboxypeptidase A; SPTR: Peptidase U61 LD-carboxypeptidase A YP_004658923.1 PFAM: LD-carboxypeptidase; COGs: COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); InterPro IPR001457; KEGG: dfe:Dfer_4038 NADH-ubiquinone/plastoquinone oxidoreductase chain 6; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; SPTR: NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_004658924.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: dfe:Dfer_3391 hypothetical protein; SPTR: uncharacterized protein YP_004658925.1 COGs: COG0541 Signal recognition particle GTPase; InterProIPR003593:IPR004780:IPR013822:IPR000897:IPR 004125; KEGG: dfe:Dfer_3390 signal recognition particle protein; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; SMART: ATPase, AAA+ type, core; SPTR: Signal recognition particle protein; TIGRFAM: Signal recognition particle, SRP YP_004658926.1 PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein; InterPro IPR005181; KEGG: sli:Slin_5097 hypothetical protein; PFAM: Protein of unknown function DUF303, acetylesterase SPTR: uncharacterized protein YP_004658927.1 PFAM: Domain of unknown function (DUF303); COGs: COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); HAMAP: NAD(P)H-quinone oxidoreductase subunit 3; InterPro IPR000440; KEGG: sli:Slin_5098 NADH-ubiquinone/plastoquinone oxidoreductase chain 3; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3; SPTR: NADH-quinone oxidoreductase subunit YP_004658928.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; COGs: COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase; HAMAP: NAD(P)H-quinone oxidoreductase subunit K; InterPro IPR006138:IPR006137; KEGG: sli:Slin_5099 NADH-quinone oxidoreductase subunit beta; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit B 2; TIGRFAM: NADH:ubiquinone oxidoreductase, 20kDa subunit YP_004658929.1 PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; COGs: COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit J; InterPro IPR010218:IPR001268; KEGG: dfe:Dfer_4086 NADH dehydrogenase (ubiquinone) 30 kDa subunit; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit; SPTR: NADH-quinone oxidoreductase subunit C 2; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C YP_004658930.1 PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; COGs: COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; HAMAP: NAD(P)H-quinone oxidoreductase subunit H; InterPro IPR001135; KEGG: sli:Slin_5101 NADH dehydrogenase (quinone); PFAM: NADH-quinone oxidoreductase, subunit D; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH dehydrogenase (Quinone) YP_004658931.1 PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; TIGRFAM: NADH dehydrogenase I, D subunit; COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023; KEGG: dfe:Dfer_4084 NADH-quinone oxidoreductase, E subunit; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit YP_004658932.1 PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterPro IPR011537:IPR011538:IPR019554:IPR019575; KEGG: sli:Slin_5103 NADH-quinone oxidoreductase, F subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH ubiquinone oxidoreductase, F subunit YP_004658933.1 PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain; TIGRFAM: NADH-quinone oxidoreductase, F subunit; COGs: COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); InterPro IPR001041:IPR019574; KEGG: dfe:Dfer_4082 ferredoxin; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; PRIAM: NADH dehydrogenase (quinone); SPTR: Ferredoxin YP_004658934.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; COGs: COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); HAMAP: NAD(P)H-quinone oxidoreductase subunit 1; InterPro IPR001694; KEGG: sli:Slin_5105 NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone oxidoreductase, subunit 1; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit H 2 YP_004658935.1 PFAM: NADH dehydrogenase; COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); HAMAP: NADH-quinone oxidoreductase, chain I; InterPro IPR010226:IPR001450; KEGG: dfe:Dfer_4080 NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit I; TIGRFAM: NADH-quinone oxidoreductase, chain I YP_004658936.1 PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I; COGs: COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); InterPro IPR001457; KEGG: dfe:Dfer_4079 NADH-ubiquinone/plastoquinone oxidoreductase chain 6; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; SPTR: NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_004658937.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; COGs: COG4335 DNA alkylation repair protein; KEGG: cpi:Cpin_5072 heat domain containing protein; SPTR: HEAT domain containing protein YP_004658938.1 COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR001753:IPR006176:IPR006108; KEGG: sli:Slin_6109 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; PRIAM: 3-hydroxybutyryl-CoA epimerase; SPTR: 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein YP_004658939.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR002155; KEGG: sli:Slin_6110 acetyl-CoA acetyltransferase; PRIAM: Acetyl-CoA C-acyltransferase; SPTR: Acetyl-CoA acetyltransferase; TIGRFAM: Thiolase YP_004658940.1 PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; KEGG: sli:Slin_1607 hypothetical protein; SPTR: uncharacterized protein YP_004658941.1 COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: sli:Slin_3474 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 YP_004658942.1 PFAM: Major Facilitator Superfamily; InterPro IPR010496; KEGG: sli:Slin_4772 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein YP_004658943.1 PFAM: PA14 domain; Domain of Unknown Function (DUF1080); InterPro IPR013078; KEGG: shg:Sph21_1181 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase YP_004658944.1 PFAM: Phosphoglycerate mutase; COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; InterPro IPR005750:IPR001986; KEGG: dfe:Dfer_4252 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; PRIAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; SPTR:UDP-N-acetylglucosamine1-carboxyvinyltransfera se; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_004658947.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: fba:FIC_01768 beta-lactamase-like protein; SPTR: Beta-lactamase-like protein YP_004658948.1 PFAM: Metallo-beta-lactamase superfamily; COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 013656:IPR013655; KEGG: fjo:Fjoh_3360 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-3; PAS fold-4; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAC motif; PAS; SPTR: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS YP_004658949.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR000014:IPR003661:IPR003594; KEGG: cyj:Cyan7822_2525 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS YP_004658950.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR003661:IPR003594:IPR001789:IPR000014:IPR 001610:IPR013656:IPR013655; KEGG: npu:Npun_F2908 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; PAS fold-4; PAS fold-3; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS YP_004658951.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004658952.1 PFAM: Metallo-beta-lactamase superfamily; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: sli:Slin_3276 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein YP_004658953.1 PFAM: Response regulator receiver domain; KEGG: rrs:RoseRS_2469 cell wall anchor domain-containing protein; SPTR: LPXTG-motif cell wall anchor domain YP_004658954.1 KEGG: ppn:Palpr_0817 TonB-dependent receptor plug; SPTR: OmpA-related protein YP_004658955.1 COGs: COG0313 methyltransferase; HAMAP: Ribosomal RNA small subunit methyltransferase I; InterPro IPR008189:IPR000878; KEGG: dfe:Dfer_4999 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; PFAM: Tetrapyrrole methylase; SPTR: Ribosomal RNA small subunit methyltransferase I; TIGRFAM: Uncharacterised protein family UPF0011 YP_004658956.1 PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family; KEGG: dfe:Dfer_4998 hypothetical protein; SPTR: uncharacterized protein YP_004658957.1 COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase; InterPro IPR000760; KEGG: dfe:Dfer_4997 inositol-phosphate phosphatase; PFAM: Inositol monophosphatase; SPTR: Inositol-phosphate phosphatase YP_004658958.1 PFAM: Inositol monophosphatase; COGs: COG3386 Gluconolactonase; InterPro IPR000801:IPR013658; KEGG: plm:Plim_2162 SMP-30/gluconolaconase/LRE domain protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; esterase; SPTR: SMP-30/Gluconolaconase/LRE domain protein YP_004658959.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; esterase; COGs: COG3182 Uncharacterized iron-regulated membrane protein; InterPro IPR005625; KEGG: sli:Slin_1573 PepSY-associated TM helix domain protein; PFAM: PepSY-associated TM helix; SPTR: PepSY-associated TM helix domain protein YP_004658960.1 PFAM: PepSY-associated TM helix; KEGG: sli:Slin_0961 hypothetical protein; SPTR: uncharacterized protein YP_004658961.1 PFAM: Planctomycete cytochrome C; InterPro IPR006311:IPR010869; KEGG: dfe:Dfer_1977 protein of unknown function DUF1501; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein YP_004658962.1 PFAM: Protein of unknown function (DUF1501); InterPro IPR011429:IPR011444; KEGG: sli:Slin_0959 hypothetical protein; PFAM: Protein of unknown function DUF1549; Cytochrome C, Planctomycete; SPTR: uncharacterized protein YP_004658963.1 PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553); InterPro IPR006311:IPR010869; KEGG: sli:Slin_0958 hypothetical protein; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein; manually curated YP_004658964.1 PFAM: Protein of unknown function (DUF1501); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; InterPro IPR011429:IPR011444; KEGG: sli:Slin_0957 hypothetical protein; PFAM: Protein of unknown function DUF1549; Cytochrome C, Planctomycete; SPTR: uncharacterized protein YP_004658965.1 PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553); InterPro IPR012944; KEGG: sli:Slin_0956 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein YP_004658966.1 PFAM: SusD family; InterPro IPR012910:IPR000531; KEGG: sli:Slin_0955 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug YP_004658967.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: phe:Phep_3870 lipase; SPTR: uncharacterized protein YP_004658968.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_4887 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 YP_004658969.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: sli:Slin_4886 hypothetical protein; SPTR: uncharacterized protein YP_004658970.1 COGs: COG0158 Fructose-1 6-bisphosphatase; HAMAP: Fructose-1,6-bisphosphatase; InterPro IPR000146; KEGG: dfe:Dfer_4096 inositol phosphatase/fructose-16-bisphosphatase; PFAM: Fructose-1,6-bisphosphatase; PRIAM: Fructose-bisphosphatase; SPTR: Fructose-1,6-bisphosphatase class 1 YP_004658971.1 PFAM: Fructose-1-6-bisphosphatase; COGs: COG3001 conserved hypothetical protein; InterPro IPR016477; KEGG: sli:Slin_5692 fructosamine/ketosamine-3-kinase; PFAM: Fructosamine/Ketosamine-3-kinase; SPTR: Fructosamine/Ketosamine-3-kinase YP_004658972.1 PFAM: Fructosamine kinase; COGs: COG2377 molecular chaperone distantly related to HSP70-fold metalloprotease; HAMAP: Anhydro-N-acetylmuramic acid kinase; InterPro IPR005338; KEGG: sli:Slin_5693 hypothetical protein; PFAM: Anhydro-N-acetylmuramic acid kinase; SPTR: Anhydro-N-acetylmuramic acid kinase YP_004658973.1 PFAM: Uncharacterised protein family (UPF0075); InterPro IPR001478; KEGG: sli:Slin_5609 PDZ/DHR/GLGF domain protein; PFAM: PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; SPTR: PDZ/DHR/GLGF domain protein YP_004658974.1 PFAM: PDZ domain (Also known as DHR or GLGF); COGs: COG0149 Triosephosphate isomerase; InterPro IPR000652; KEGG: sli:Slin_5608 triosephosphate isomerase; PFAM: Triosephosphate isomerase; PRIAM: Triose-phosphate isomerase; SPTR: Triosephosphate isomerase; TIGRFAM: Triosephosphate isomerase YP_004658975.1 PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase; KEGG: sli:Slin_0764 hypothetical protein; SPTR: uncharacterized protein YP_004658976.1 COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: hmg:100202455 similar to Nitrilase homolog 1; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004658977.1 PFAM: Carbon-nitrogen hydrolase; COGs: COG3540 Phosphodiesterase/alkaline phosphatase D; KEGG: sli:Slin_0226 phosphodiesterase/alkaline phosphatase D; SPTR: Phosphodiesterase/alkaline phosphatase D YP_004658978.1 PFAM: PhoD-like phosphatase; InterPro IPR013216; KEGG: sli:Slin_3133 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11 YP_004658979.1 PFAM: Methyltransferase domain; COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR002986:IPR000183; KEGG: sli:Slin_0227 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; PRIAM: Diaminopimelate decarboxylase; SPTR: Diaminopimelate decarboxylase; TIGRFAM: Diaminopimelate decarboxylase YP_004658980.1 PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase; COGs: COG0217 conserved hypothetical protein; HAMAP: Protein of unknown function DUF28; InterPro IPR002876; KEGG: sli:Slin_0228 hypothetical protein; PFAM: Protein of unknown function DUF28; SPTR: UPF0082 protein Slin_0228; TIGRFAM: Protein of unknown function DUF28 YP_004658981.1 PFAM: Domain of unknown function DUF28; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family; COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA dimethylallyltransferase; InterPro IPR018022:IPR002627; KEGG: sli:Slin_0297 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: tRNA dimethylallyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase YP_004658982.1 PFAM: IPP transferase; TIGRFAM: tRNA dimethylallyltransferase; KEGG: phe:Phep_2286 hypothetical protein; SPTR: uncharacterized protein YP_004658983.1 KEGG: dfe:Dfer_2921 hypothetical protein; SPTR: uncharacterized protein YP_004658985.1 COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR005790:IPR010372; KEGG: dfe:Dfer_1065 DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; SPTR: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit YP_004658986.1 PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; KEGG: dfe:Dfer_4777 hypothetical protein; SPTR: uncharacterized protein YP_004658987.1 COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: sli:Slin_3374 peptidase U61 LD-carboxypeptidase A; PFAM: Peptidase S66, LD-carboxypeptidase A; SPTR: Peptidase U61 LD-carboxypeptidase A YP_004658988.1 PFAM: LD-carboxypeptidase; KEGG: sli:Slin_5539 hypothetical protein; SPTR: uncharacterized protein YP_004658989.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593:IPR001140:IPR003439; KEGG: sli:Slin_5540 ABC transporter; PFAM: ABC transporter-like; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein YP_004658990.1 PFAM: ABC transporter transmembrane region; ABC transporter; InterPro IPR007165; KEGG: dfe:Dfer_4241 membrane protein of unknown function; PFAM: Membrane protein of unknown function; SPTR: uncharacterized protein YP_004658991.1 PFAM: Membrane protein of unknown function YP_004658992.1 KEGG: sli:Slin_2304 hypothetical protein; SPTR: uncharacterized protein YP_004658993.1 KEGG: sli:Slin_1067 hypothetical protein; SPTR: uncharacterized protein YP_004658994.1 COGs: COG4757 alpha/beta hydrolase; KEGG: swp:swp_1822 alpha/beta hydrolase; SPTR: Alpha/beta hydrolase YP_004658995.1 InterPro IPR001647; KEGG: pau:PA14_48190 transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulatory protein, TetR family YP_004658996.1 PFAM: Bacterial regulatory proteins, tetR family; COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: sli:Slin_5037 amidohydrolase; PFAM: Amidohydrolase 1; SPTR: Amidohydrolase YP_004658997.1 PFAM: Amidohydrolase; COGs: COG0372 Citrate synthase; InterPro IPR010953:IPR002020; KEGG: sli:Slin_5036 citrate synthase I; PFAM: Citrate synthase-like; PRIAM: Citrate (Si)-synthase; SPTR: Citrate synthase; TIGRFAM: Citrate synthase, type II YP_004658998.1 PFAM: Citrate synthase; TIGRFAM: citrate synthase I (hexameric type); InterPro IPR005181:IPR003961; KEGG: dfe:Dfer_3958 fibronectin type III domain protein; PFAM: Protein of unknown function DUF303, acetylesterase ; Fibronectin, type III; SPTR: Fibronectin type III domain protein YP_004658999.1 PFAM: Domain of unknown function (DUF303); COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR010168:IPR002933:IPR011650; KEGG: sli:Slin_0207 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: N-acetyldiaminopimelate deacetylase; SPTR: Amidohydrolase; TIGRFAM: Peptidase M20D, amidohydrolase YP_004659000.1 PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase; COGs: COG0131 Imidazoleglycerol-phosphate dehydratase; HAMAP: Imidazoleglycerol-phosphate dehydratase; InterPro IPR000807:IPR005954:IPR006543; KEGG: dfe:Dfer_2927 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; PFAM: Imidazoleglycerol-phosphate dehydratase; PRIAM: Histidinol-phosphatase; SPTR: Histidinol-phosphatase; TIGRFAM: Histidinol-phosphatase; Histidinol-phosphate phosphatase YP_004659001.1 PFAM: Imidazoleglycerol-phosphate dehydratase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; histidinol-phosphate phosphatase domain; histidinol-phosphatase YP_004659002.1 KEGG: plt:Plut_0531 hypothetical protein; SPTR: uncharacterized protein YP_004659003.1 PFAM: Protein of unknown function (DUF3127); COGs: COG1626 Neutral trehalase; InterPro IPR001661; KEGG: cja:CJA_0284 trehalase, , tre37A; PFAM: Glycoside hydrolase, family 37; PRIAM: Alpha,alpha-trehalase; SPTR: Trehalase, , tre37A YP_004659004.1 PFAM: Trehalase; COGs: COG0738 Fucose permease; InterPro IPR011701; KEGG: psm:PSM_B0242 hypothetical protein; PFAM: Major facilitator superfamily MFS-1; SPTR: uncharacterized protein YP_004659005.1 PFAM: Major Facilitator Superfamily YP_004659006.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: lby:Lbys_2314 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004659007.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG0516 IMP dehydrogenase/GMP reductase; InterPro IPR005990:IPR000644:IPR001093; KEGG: sli:Slin_1193 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core; PRIAM: IMP dehydrogenase; SMART: Cystathionine beta-synthase, core; SPTR: Inosine-5'-monophosphate dehydrogenase; TIGRFAM: IMP dehydrogenase YP_004659008.1 PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase; COGs: COG0162 Tyrosyl-tRNA synthetase; HAMAP: Tyrosyl-tRNA synthetase; InterPro IPR002307:IPR002305; KEGG: sli:Slin_1102 tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; PRIAM: Tyrosine--tRNA ligase; SPTR: Tyrosyl-tRNA synthetase; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; manually curated YP_004659009.1 PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase; COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR000394:IPR007046:IPR007634; KEGG: sli:Slin_0631 RNA polymerase, sigma 54 subunit, RpoN; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54; SPTR: RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma factor 54 YP_004659010.1 PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor; KEGG: sli:Slin_0630 hypothetical protein; SPTR: uncharacterized protein YP_004659011.1 COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: sli:Slin_0629 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR: Enoyl-CoA hydratase/isomerase YP_004659012.1 PFAM: Enoyl-CoA hydratase/isomerase; InterPro IPR007138; KEGG: sli:Slin_4551 antibiotic biosynthesis monooxygenase; PFAM: Antibiotic biosynthesis monooxygenase; SPTR: Antibiotic biosynthesis monooxygenase YP_004659013.1 PFAM: Antibiotic biosynthesis monooxygenase; COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: sli:Slin_0539 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein YP_004659014.1 PFAM: Thioesterase superfamily; KEGG: dfe:Dfer_3667 hypothetical protein; SPTR: uncharacterized protein YP_004659015.1 COGs: COG0249 Mismatch repair ATPase (MutS family); InterPro IPR000432; KEGG: sli:Slin_5542 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; SPTR: DNA mismatch repair protein MutS domain protein YP_004659016.1 PFAM: MutS domain V; MutS domain III; COGs: COG0597 Lipoprotein signal peptidase; HAMAP: Peptidase A8, signal peptidase II; InterPro IPR001872; KEGG: dfe:Dfer_1207 lipoprotein signal peptidase; PFAM: Peptidase A8, signal peptidase II; SPTR: Lipoprotein signal peptidase 1; TIGRFAM: Peptidase A8, signal peptidase II YP_004659017.1 PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase; COGs: COG0326 Molecular chaperone HSP90 family; InterPro IPR003594:IPR020576; KEGG: dfe:Dfer_5199 heat shock protein 90; PFAM: Heat shock protein Hsp90, C-terminal; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: ATP-binding region ATPase domain protein YP_004659018.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Hsp90 protein YP_004659019.1 InterPro IPR003961:IPR001590; KEGG: fba:FIC_00814 hypothetical protein; PFAM: Peptidase M12B, ADAM/reprolysin; Fibronectin, type III; SMART: Fibronectin, type III; SPTR: uncharacterized protein YP_004659020.1 PFAM: Reprolysin (M12B) family zinc metalloprotease; Fibronectin type III domain; InterPro IPR000182; KEGG: fbc:FB2170_13021 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: uncharacterized protein YP_004659021.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG1018 Flavodoxin reductase (ferredoxin-NADPH reductase) family 1; InterPro IPR008333:IPR001433:IPR001041; KEGG: sli:Slin_5188 oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: Ferredoxin; Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region; PRIAM: Nitric oxide dioxygenase; SPTR: Oxidoreductase FAD/NAD(P)-binding domain protein YP_004659022.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; COGs: COG0316 conserved hypothetical protein; InterPro IPR016092:IPR000361; KEGG: dfe:Dfer_3150 iron-sulfur cluster assembly accessory protein; PFAM: FeS cluster biogenesis; SPTR: Iron-sulfur cluster assembly accessory protein; TIGRFAM: FeS cluster insertion YP_004659023.1 PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein; COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094:IPR007173; KEGG: sli:Slin_6373 FAD linked oxidase; PFAM: FAD linked oxidase, N-terminal; D-arabinono-1,4-lactone oxidase; PRIAM: Alditol oxidase; SPTR: FAD linked oxidase domain protein YP_004659024.1 PFAM: D-arabinono-1,4-lactone oxidase; FAD binding domain; InterPro IPR010496; KEGG: dfe:Dfer_0295 protein of unknown function DUF1080; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein YP_004659025.1 PFAM: Domain of Unknown Function (DUF1080) YP_004659026.1 COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: sli:Slin_0241 cobyrinic acid ac-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Cobyrinic acid ac-diamide synthase YP_004659027.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; COGs: COG1475 transcriptional regulator protein; InterPro IPR004437:IPR003115; KEGG: sli:Slin_0242 ParB-like partition protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; SPTR: ParB-like partition protein; TIGRFAM: ParB-like partition protein YP_004659028.1 PFAM: ParB-like nuclease domain; KorB domain; TIGRFAM: ParB-like partition proteins; KEGG: sli:Slin_0243 hypothetical protein; SPTR: uncharacterized protein YP_004659029.1 COGs: COG0289 Dihydrodipicolinate reductase; InterPro IPR011770:IPR000846; KEGG: sli:Slin_0244 dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase; PRIAM: Dihydrodipicolinate reductase; SPTR: Dihydrodipicolinate reductase; TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant YP_004659030.1 PFAM: Dihydrodipicolinate reductase, N-terminus; Dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase; COGs: COG0681 Signal peptidase I; InterPro IPR000223:IPR019759; KEGG: dfe:Dfer_0210 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: Signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I YP_004659031.1 PFAM: Peptidase S26; Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type; KEGG: sli:Slin_1574 glycosyl hydrolase, BNR repeat-containing protein; SPTR: Glycosyl hydrolase, BNR repeat-containing protein YP_004659032.1 PFAM: BNR/Asp-box repeat YP_004659035.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR011659:IPR002469:IPR001375; KEGG: sli:Slin_2851 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein YP_004659036.1 PFAM: Prolyl oligopeptidase; WD40-like Beta Propeller Repeat; Dipeptidyl peptidase IV (DPP IV) N-terminal region; COGs: COG0427 Acetyl-CoA hydrolase; InterPro IPR003702; KEGG: fba:FIC_00447 4-hydroxybutyrate coenzyme A transferase; PFAM: Acetyl-CoA hydrolase/transferase; SPTR: 4-hydroxybutyrate coenzyme A transferase YP_004659037.1 PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro IPR012577; KEGG: sli:Slin_4035 NIPSNAP family containing protein; PFAM: NIPSNAP; SPTR: NIPSNAP family containing protein YP_004659038.1 PFAM: NIPSNAP; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: dfe:Dfer_1416 transcriptional regulator, HxlR family; PFAM: Helix-turn-helix, HxlR type; SPTR: Transcriptional regulator, HxlR family YP_004659039.1 PFAM: HxlR-like helix-turn-helix; COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: shg:Sph21_2760 NADP-dependent oxidoreductase domain; PFAM: Aldo/keto reductase; SPTR: Aldo/keto reductase YP_004659040.1 PFAM: Aldo/keto reductase; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR012938; KEGG: dfe:Dfer_4807 glucose sorbosone dehydrogenase; SPTR: Glucose sorbosone dehydrogenase YP_004659041.1 PFAM: Glucose / Sorbosone dehydrogenase; Membrane bound L-sorbosone dehydrogenase; InterPro IPR003088; KEGG: dfe:Dfer_4806 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I YP_004659042.1 PFAM: Cytochrome c; KEGG: bra:BRADO3484 hypothetical protein; SPTR: uncharacterized protein YP_004659043.1 COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; InterPro IPR000192; KEGG: sli:Slin_2434 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; SPTR: Aminotransferase class V YP_004659044.1 PFAM: Aminotransferase class-V; TIGRFAM: phosphoserine aminotransferase, KEGG: cqu:CpipJ_CPIJ012362 hypothetical protein; SPTR: uncharacterized protein YP_004659045.1 KEGG: fjo:Fjoh_0717 hypothetical protein; SPTR: uncharacterized protein YP_004659046.1 PFAM: S23 ribosomal protein; TIGRFAM: TIGR02436 family protein; COGs: COG0757 3-dehydroquinate dehydratase II; HAMAP: Dehydroquinase, class II; InterPro IPR001874; KEGG: dfe:Dfer_2796 3-dehydroquinate dehydratase, type II; PFAM: Dehydroquinase, class II; PRIAM: 3-dehydroquinate dehydratase; SPTR: 3-dehydroquinate dehydratase, type II; TIGRFAM: Dehydroquinase, class II YP_004659047.1 PFAM: Dehydroquinase class II; TIGRFAM: 3-dehydroquinate dehydratase, type II; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: mtt:Ftrac_1898 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein YP_004659048.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: phe:Phep_3735 RND family efflux transporter MFP subunit; PFAM: Secretion protein HlyD; SPTR: Cation or acridine efflux membrane fusion protein; TIGRFAM: Secretion protein HlyD YP_004659049.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_004659050.1 KEGG: shg:Sph21_1774 hypothetical protein; SPTR: uncharacterized protein YP_004659051.1 InterPro IPR012944; KEGG: shg:Sph21_1775 RagB/SusD domain-containing protein; PFAM: RagB/SusD; SPTR: Outer membrane protein YP_004659052.1 PFAM: SusD family; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: shg:Sph21_1776 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein YP_004659053.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG3857 ATP-dependent nuclease subunit B; KEGG: dfe:Dfer_2374 hypothetical protein; SPTR: uncharacterized protein YP_004659054.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: phe:Phep_3159 response regulator receiver; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver YP_004659055.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559:IPR003594; KEGG: shg:Sph21_2097 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; ATP-binding region, ATPase-like; SPTR: Histidine kinase YP_004659056.1 PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR008454:IPR012910:IPR000531; KEGG: dfe:Dfer_0346 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Collagen-binding surface protein Cna-like, B region; SPTR: TonB-dependent receptor domain protein YP_004659057.1 PFAM: TonB-dependent Receptor Plug Domain; InterPro IPR000834; KEGG: sli:Slin_2367 peptidase M14, carboxypeptidase A; PFAM: Peptidase M14, carboxypeptidase A; SPTR: Peptidase M14, carboxypeptidase A YP_004659058.1 PFAM: Zinc carboxypeptidase YP_004659059.1 COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR000212; KEGG: dfe:Dfer_1136 UvrD/REP helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: UvrD/REP helicase YP_004659060.1 PFAM: UvrD/REP helicase; Prodigal; manually curated YP_004659061.1 PFAM: ABC transporter transmembrane region; ABC transporter; InterPro IPR000551; KEGG: sli:Slin_2379 MerR family transcriptional regulator; SMART: HTH transcriptional regulator, MerR; SPTR: Transcriptional regulator, MerR family YP_004659063.1 COGs: COG0207 Thymidylate synthase; HAMAP: Thymidylate synthase; InterPro IPR000398; KEGG: sli:Slin_2832 thymidylate synthase; PFAM: Thymidylate synthase, C-terminal; PRIAM: Thymidylate synthase; SPTR: Thymidylate synthase; TIGRFAM: Thymidylate synthase, C-terminal YP_004659064.1 PFAM: Thymidylate synthase; TIGRFAM: thymidylate synthase; SPTR: uncharacterized protein YP_004659065.1 TIGRFAM: TIGR02646 family protein; COGs: COG3950 ATP-binding protein involved in virulence; KEGG: sil:SPOA0124 hypothetical protein; SPTR: uncharacterized protein YP_004659066.1 COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006098:IPR006159:IPR006099:IPR006158; KEGG: sli:Slin_6640 methylmalonyl-CoA mutase, large subunit; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding; PRIAM: Methylmalonyl-CoA mutase; SPTR: Methylmalonyl-CoA mutase, large subunit; TIGRFAM: Methylmalonyl-CoA mutase, alpha chain, catalytic; Methylmalonyl-CoA mutase, C-terminal YP_004659067.1 PFAM: Methylmalonyl-CoA mutase; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase C-terminal domain; COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006099; KEGG: sli:Slin_6641 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; PRIAM: Methylmalonyl-CoA mutase; SPTR: Methylmalonyl-CoA mutase YP_004659068.1 PFAM: Methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase, heterodimeric type, beta chain; Signal predicted by SignalP 3.0 HMM; IMG reference gene:2505789240_SP YP_004659069.1 SPTR: Putative uncharacterized protein YP_004659070.1 COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: sli:Slin_6996 ATPase-like protein involved in chromosome partitioning; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Cobyrinic acid ac-diamide synthase YP_004659071.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004659072.1 KEGG: bth:BT_4767 conjugate transposon protein; SPTR: Conjugal transfer protein TraE YP_004659075.1 KEGG: bth:BT_0094 conjugate transposon protein; SPTR: Putative uncharacterized protein YP_004659076.1 COGs: COG3451 Type IV secretory pathway VirB4 protein; KEGG: zpr:ZPR_3458 type IV secretory pathway VirB4 components-like protein; SPTR: Type IV secretory pathway VirB4 components-like protein; TIGRFAM: Bacteroides conjugation system ATPase, TraG family YP_004659077.1 PFAM: Domain of unknown function DUF87; TIGRFAM: Bacteroides conjugation system ATPase, TraG family; KEGG: psn:Pedsa_1679 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659078.1 KEGG: zpr:ZPR_3462 TraJ family protein conjugative transposon; SPTR: TraJ family protein conjugative transposon YP_004659079.1 PFAM: Homologues of TraJ from Bacteroides conjugative transposon YP_004659080.1 KEGG: bvu:BVU_1567 conjugate transposon protein; SPTR: Putative uncharacterized protein; TIGRFAM: Bacteroides conjugative transposon TraK protein YP_004659081.1 TIGRFAM: Bacteroides conjugative transposon TraK protein; KEGG: pgn:PGN_0595 putative conjugate transposon protein TraA; SPTR: Putative conserved protein found in conjugate transposon TraM YP_004659082.1 PFAM: Protein of unknown function (DUF3714); KEGG: bsa:Bacsa_1116 conjugative transposon TraN protein; SPTR: Putative uncharacterized protein; TIGRFAM: Bacteroides conjugative transposon TraN protein YP_004659083.1 TIGRFAM: Bacteroides conjugative transposon TraN protein; SPTR: Putative uncharacterized protein YP_004659084.1 PFAM: Conjugative transposon protein TraO; COGs: COG4584 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: sli:Slin_6980 integrase catalytic region; PFAM: Integrase, catalytic core; SPTR: Integrase catalytic region YP_004659085.1 PFAM: Integrase core domain; COGs: COG1484 DNA replication protein; InterPro IPR003593:IPR002611; KEGG: sli:Slin_6979 IstB domain protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; SPTR: IstB domain protein ATP-binding protein YP_004659086.1 PFAM: IstB-like ATP binding protein; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: cly:Celly_2380 UvrD/REP helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: LexA repressor YP_004659087.1 PFAM: UvrD/REP helicase; COGs: COG1533 DNA repair photolyase; InterPro IPR006638:IPR007197; KEGG: cly:Celly_2381 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Conserved Archaeal protein YP_004659088.1 PFAM: Radical SAM superfamily; COGs: COG3550 conserved hypothetical protein; InterPro IPR012894:IPR012893; KEGG: cpc:Cpar_0148 HipA domain-containing protein; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; SPTR: Putative uncharacterized protein YP_004659089.1 PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain; InterPro IPR017508; KEGG: pvi:Cvib_0661 hypothetical protein; SPTR: Toxin-antitoxin system, toxin component, HipA family; TIGRFAM: HipA, N-terminal YP_004659090.1 TIGRFAM: HipA N-terminal domain; InterPro IPR017507:IPR001387; KEGG: cpc:Cpar_0146 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; TIGRFAM: Transcriptional regulator, HipB-like YP_004659091.1 PFAM: Helix-turn-helix; TIGRFAM: transcriptional regulator, y4mF family YP_004659092.1 Prodigal; manually curated YP_004659093.1 COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: bsa:Bacsa_3149 conjugate transposon protein; SPTR: Conjugative transposon protein TraA YP_004659094.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004659097.1 KEGG: sli:Slin_6693 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659099.1 KEGG: sli:Slin_6855 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659100.1 InterPro IPR000525; KEGG: gka:GKP02 replication initiator protein; PFAM: Initiator Rep protein; SPTR: Replication initiator protein YP_004659101.1 PFAM: Initiator Replication protein; COGs: COG2217 Cation transport ATPase; InterPro IPR006403:IPR006416:IPR001757:IPR006121:IPR008250:IPR0058 34; KEGG: sli:Slin_6890 copper-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Copper-translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter YP_004659102.1 PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: zpr:ZPR_4233 heavy metal-associated protein; SPTR: Heavy metal-associated protein YP_004659103.1 PFAM: Heavy-metal-associated domain; COGs: COG1451 metal-dependent hydrolase; InterPro IPR002725; KEGG: cyp:PCC8801_2959 hypothetical protein; PFAM: Protein of unknown function DUF45; SPTR: Putative uncharacterized protein YP_004659104.1 PFAM: Protein of unknown function DUF45; COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR004473:IPR014001:IPR007409:IPR006935; KEGG: cyh:Cyan8802_3142 type I site-specific deoxyribonuclease, HsdR family; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; SPTR: Type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit YP_004659105.1 PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: fra:Francci3_4012 restriction modification system DNA specificity subunit; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Restriction modification system DNA specificity domain YP_004659106.1 PFAM: Type I restriction modification DNA specificity domain; COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: swo:Swol_2258 type I restriction-modification system, M subunit; PFAM: DNA methylase, adenine-specific; SPTR: Type I restriction-modification system, M subunit YP_004659107.1 PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM); COGs: COG2217 Cation transport ATPase; InterPro IPR006404:IPR006416:IPR001757:IPR008250:IPR005834; KEGG: dfe:Dfer_1187 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; PRIAM: Zinc-exporting ATPase; SPTR: Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter YP_004659108.1 PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; KEGG: sli:Slin_6747 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659109.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: fjo:Fjoh_3345 RND family efflux transporter MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD YP_004659110.1 TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG3696 Putative silver efflux pump; InterPro IPR004763:IPR001036:IPR003423; KEGG: chu:CHU_1512 cation efflux protein; PFAM: Acriflavin resistance protein; Outer membrane efflux protein; SPTR: Cation efflux protein; TIGRFAM: Heavy metal efflux pump CzcA YP_004659111.1 PFAM: Outer membrane efflux protein; AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); KEGG: fjo:Fjoh_3348 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659112.1 COGs: COG2217 Cation transport ATPase; InterPro IPR006403:IPR006416:IPR001757:IPR008250:IPR005834; KEGG: mtt:Ftrac_2065 copper-translocating p-type atpase; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Copper-translocating P-type ATPase; TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter YP_004659113.1 PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; KEGG: sli:Slin_6865 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659114.1 KEGG: cle:Clole_0353 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659115.1 KEGG: gfo:GFO_1264 secreted protein; SPTR: Secreted protein YP_004659116.1 KEGG: sli:Slin_6867 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659117.1 PFAM: Protein of unknown function (DUF3347); KEGG: fjo:Fjoh_3075 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659118.1 KEGG: psn:Pedsa_1579 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated YP_004659119.1 COGs: COG2608 Copper chaperone; InterPro IPR003457:IPR006121; KEGG: zpr:ZPR_3374 mercuric transport protein; PFAM: Heavy metal transport/detoxification protein; Mercuric transport protein MerT; SPTR: Mercuric transport protein YP_004659120.1 PFAM: Heavy-metal-associated domain; MerT mercuric transport protein; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: aoe:Clos_1084 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11 YP_004659121.1 PFAM: Methyltransferase domain; KEGG: sli:Slin_6813 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659122.1 PFAM: Protein of unknown function (DUF2911); KEGG: cao:Celal_3908 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated YP_004659123.1 KEGG: psn:Pedsa_1599 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659124.1 PFAM: Protein of unknown function (DUF3347); KEGG: sli:Slin_6863 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659125.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: chu:CHU_1501 copper transport system protein; PFAM: Secretion protein HlyD; SPTR: Possible component of copper transport system; TIGRFAM: Secretion protein HlyD YP_004659126.1 TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sli:Slin_6878 RND family efflux transporter MFP subunit; SPTR: RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD YP_004659127.1 COGs: COG1538 Outer membrane protein; KEGG: chu:CHU_1503 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659128.1 COGs: COG3696 Putative silver efflux pump; InterPro IPR001036; KEGG: chu:CHU_1504 heavy metal efflux pump protein; PFAM: Acriflavin resistance protein; SPTR: Heavy metal efflux pump protein YP_004659129.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); COGs: COG3696 Putative silver efflux pump; InterPro IPR001036; KEGG: chu:CHU_1504 heavy metal efflux pump protein; PFAM: Acriflavin resistance protein; SPTR: Heavy metal efflux pump protein YP_004659130.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); KEGG: sli:Slin_1514 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659131.1 COGs: COG2132 Putative multicopper oxidase; InterPro IPR011707:IPR001117:IPR011706; KEGG: sli:Slin_6866 bilirubin oxidase; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 1; Multicopper oxidase, type 2; PRIAM: Bilirubin oxidase; SPTR: Bilirubin oxidase YP_004659132.1 PFAM: Multicopper oxidase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: fjo:Fjoh_0190 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: AraC family transcriptional regulator YP_004659133.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: dfe:Dfer_3108 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659134.1 KEGG: sli:Slin_6854 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659135.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107:IPR002104; KEGG: sli:Slin_6972 integrase family protein; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Integrase family protein YP_004659136.1 PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family YP_004659137.1 COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein YP_004659138.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; KEGG: rrs:RoseRS_0630 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659139.1 KEGG: rrs:RoseRS_0631 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659141.1 KEGG: ccu:Ccur_13910 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659142.1 KEGG: sli:Slin_4859 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659143.1 KEGG: ccu:Ccur_13910 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659144.1 COGs: COG3621 Patatin; InterPro IPR002641; KEGG: zpr:ZPR_3998 patatin; PFAM: Patatin; SPTR: Patatin YP_004659145.1 PFAM: Patatin-like phospholipase; COGs: COG2856 Zn peptidase; InterPro IPR001387:IPR010359; KEGG: psn:Pedsa_1879 protein of unknown function DUF955; PFAM: Protein of unknown function DUF955; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Putative uncharacterized protein YP_004659146.1 PFAM: Helix-turn-helix; Domain of unknown function (DUF955); KEGG: kol:Kole_0648 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659147.1 COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160; KEGG: rbo:A1I_03790 response regulator PleD; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: Response regulator PleD; TIGRFAM: Diguanylate cyclase, predicted YP_004659148.1 PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain; COGs: COG4646 DNA methylase; InterPro IPR014001:IPR001650:IPR003356; KEGG: pgn:PGN_0086 putative DNA methylase; PFAM: DNA methylase, adenine-specific; DNA/RNA helicase, C-terminal; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal; SPTR: Putative DNA methylase YP_004659149.1 PFAM: N-6 DNA Methylase; Helicase conserved C-terminal domain; KEGG: bfr:BF0143 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659150.1 PFAM: Domain of unknown function (DUF1896); KEGG: sli:Slin_6836 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659152.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: wvi:Weevi_1329 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23 YP_004659153.1 PFAM: Peptidase family M23; InterPro IPR001387; KEGG: cao:Celal_0834 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Predicted protein YP_004659154.1 PFAM: Helix-turn-helix; InterPro IPR017508; KEGG: bfs:BF0724 HipA-like protein; SPTR: Putative uncharacterized protein; TIGRFAM: HipA, N-terminal YP_004659155.1 TIGRFAM: HipA N-terminal domain; COGs: COG3550 conserved hypothetical protein; InterPro IPR012894:IPR012893; KEGG: zpr:ZPR_4409 HipA-like protein; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; SPTR: HipA-like protein YP_004659156.1 PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain YP_004659157.1 KEGG: shg:Sph21_3584 hypothetical protein; SPTR: TraG family protein YP_004659158.1 PFAM: TraG/TraD family; Signal predicted by SignalP 3.0 HMM; IMG reference gene:2505789148_SP YP_004659159.1 InterPro IPR014942; KEGG: sbu:SpiBuddy_2626 hypothetical protein; PFAM: Protein of unknown function DUF1814; SPTR: Putative uncharacterized protein YP_004659160.1 PFAM: Domain of unknown function (DUF1814); KEGG: sbu:SpiBuddy_2625 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659162.1 Prodigal; manually curated YP_004659163.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004659164.1 COGs: COG5527 Protein involved in initiation of plasmid replication; InterPro IPR000525; KEGG: bmq:BMQ_pBM60001 replication initiator protein; PFAM: Initiator Rep protein; SPTR: Replication initiator protein YP_004659165.1 PFAM: Initiator Replication protein; Prodigal; manually curated YP_004659166.1 InterPro IPR007272; KEGG: sli:Slin_6935 protein of unknown function DUF395 YeeE/YedE; PFAM: Protein of unknown function DUF395, YeeE/YedE; SPTR: Putative uncharacterized protein YP_004659167.1 PFAM: YeeE/YedE family (DUF395); InterPro IPR007272; KEGG: sli:Slin_6934 protein of unknown function DUF395 YeeE/YedE; PFAM: Protein of unknown function DUF395, YeeE/YedE; SPTR: Putative uncharacterized protein YP_004659168.1 PFAM: YeeE/YedE family (DUF395); KEGG: mtt:Ftrac_3650 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659169.1 PFAM: outer membrane porin, OprD family; COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR004843:IPR008334; KEGG: zpr:ZPR_1818 5'-nucleotidase; PFAM: Metallophosphoesterase; 5'-Nucleotidase, C-terminal; PRIAM: 5'-nucleotidase; SPTR: 5'-nucleotidase YP_004659170.1 PFAM: 5'-nucleotidase, C-terminal domain; Calcineurin-like phosphoesterase; COGs: COG1416 conserved hypothetical protein; InterPro IPR014865; KEGG: chu:CHU_1583 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659171.1 PFAM: DsrE/DsrF-like family; COGs: COG3258 Cytochrome c; InterPro IPR003088; KEGG: sli:Slin_6947 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I YP_004659172.1 PFAM: Cytochrome c YP_004659173.1 KEGG: cao:Celal_2348 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659174.1 InterPro IPR013217; KEGG: shg:Sph21_0869 methyltransferase type 12; PFAM: Methyltransferase type 12; SPTR: Putative uncharacterized protein YP_004659175.1 PFAM: Methyltransferase domain; KEGG: gfo:GFO_1268 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659176.1 PFAM: Tellurite resistance protein TehB; COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR005746:IPR013766; KEGG: shg:Sph21_3201 thioredoxin; PFAM: Thioredoxin domain; SPTR: Thioredoxin; TIGRFAM: Thioredoxin YP_004659177.1 PFAM: Thioredoxin; TIGRFAM: thioredoxin; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: sli:Slin_6177 beta-lactamase; SMART: Rhodanese-like; SPTR: Beta-lactamase domain protein YP_004659178.1 PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain; KEGG: zpr:ZPR_3646 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659179.1 PFAM: Domain of unknown function DUF; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: shg:Sph21_3587 beta-lactamase domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Metallo-beta-lactamase family protein YP_004659180.1 PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain; COGs: COG0730 permease; InterPro IPR002781; KEGG: cat:CA2559_12623 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: Membrane protein YP_004659181.1 PFAM: Sulfite exporter TauE/SafE; Prodigal; manually curated YP_004659182.1 KEGG: shg:Sph21_4811 hypothetical protein; SPTR: Putative uncharacterized protein YP_004659183.1 InterPro IPR012910; KEGG: cpi:Cpin_6408 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; SPTR: Outer membrane protein YP_004659184.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: ppn:Palpr_2726 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein YP_004659185.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sli:Slin_2818 efflux transporter RND family, MFP subunit; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD YP_004659186.1 TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_2819 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein YP_004659187.1 PFAM: Outer membrane efflux protein; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: fjo:Fjoh_0180 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family YP_004659188.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: lby:Lbys_3124 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family YP_004659189.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: lby:Lbys_3125 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS YP_004659190.1 PFAM: Histidine kinase YP_004659192.1 manually curated YP_004659193.1 PFAM: Beta-lactamase; Domain of unknown function (DUF3471) YP_004659195.1 InterPro IPR003961:IPR001701; KEGG: dfe:Dfer_2105 glycoside hydrolase family 9; PFAM: Glycoside hydrolase, family 9; Fibronectin, type III; SMART: Fibronectin, type III; SPTR: Glycoside hydrolase, family 9 YP_004659196.1 PFAM: Glycosyl hydrolase family 9; Fibronectin type III domain; N-terminal ig-like domain of cellulase; KEGG: lby:Lbys_3059 lipoprotein; SPTR: Putative lipoprotein YP_004659198.1 COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119; KEGG: pap:PSPA7_0108 hypothetical protein; PFAM: Resolvase, N-terminal; SPTR: TnpR YP_004659199.1 PFAM: Resolvase, N terminal domain; Signal predicted by SignalP 3.0 HMM; IMG reference gene:2505789040_SP