-- dump date 20140620_042205 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_004646344.1 338209373 10860949 complement(153..2702) 1 NC_015693.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107:IPR002104; KEGG: sli:Slin_6972 integrase family protein; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Integrase family protein; alpha-L-fucosidase 2702 10860949 Runsl_5648 Runella slithyformis DSM 19594 alpha-L-fucosidase YP_004646344.1 153 R 761193 CDS YP_004646345.1 338209374 10860862 3561..4529 1 NC_015693.1 PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR006584:IPR003088:IPR005084; KEGG: sli:Slin_3440 PKD domain containing protein; PFAM: PKD; Cytochrome c, class I; Carbohydrate binding domain, family 6; SMART: PKD; Cellulose binding, type IV; SPTR: PKD domain containing protein; integrase family protein 4529 10860862 Runsl_5649 Runella slithyformis DSM 19594 integrase family protein YP_004646345.1 3561 D 761193 CDS YP_004646346.1 338209375 10860863 6136..8727 1 NC_015693.1 PFAM: Cytochrome c; Glucose / Sorbosone dehydrogenase; Carbohydrate binding module (family 6); PKD domain; PKD domain-containing protein 8727 10860863 Runsl_5650 Runella slithyformis DSM 19594 PKD domain-containing protein YP_004646346.1 6136 D 761193 CDS YP_004646347.1 338209376 10860864 8992..9174 1 NC_015693.1 KEGG: sli:Slin_3883 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 9174 10860864 Runsl_5651 Runella slithyformis DSM 19594 hypothetical protein YP_004646347.1 8992 D 761193 CDS YP_004646348.1 338209377 10860865 complement(9157..10665) 1 NC_015693.1 KEGG: sli:Slin_3884 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 10665 10860865 Runsl_5652 Runella slithyformis DSM 19594 hypothetical protein YP_004646348.1 9157 R 761193 CDS YP_004646349.1 338209378 10860866 complement(10730..11035) 1 NC_015693.1 COGs: COG0680 Ni Fe-hydrogenase maturation factor; InterPro IPR000671; KEGG: sli:Slin_3885 hydrogenase maturation protease; PFAM: Peptidase A31, hydrogen uptake protein; SPTR: Hydrogenase maturation protease; TIGRFAM: Peptidase A31, hydrogen uptake protein; manually curated; hypothetical protein 11035 10860866 Runsl_5653 Runella slithyformis DSM 19594 hypothetical protein YP_004646349.1 10730 R 761193 CDS YP_004646350.1 338209379 10860867 complement(11032..11502) 1 NC_015693.1 PFAM: Hydrogenase maturation protease; TIGRFAM: hydrogenase maturation protease; COGs: COG0374 Ni Fe-hydrogenase I large subunit; InterPro IPR001501; KEGG: sli:Slin_3886 nickel-dependent hydrogenase large subunit; PFAM: Nickel-dependent hydrogenase, large subunit; PRIAM: Cytochrome-c3 hydrogenase; SPTR: Nickel-dependent hydrogenase large subunit; hydrogenase maturation protease 11502 10860867 Runsl_5654 Runella slithyformis DSM 19594 hydrogenase maturation protease YP_004646350.1 11032 R 761193 CDS YP_004646351.1 338209380 10860868 complement(11600..13195) 1 NC_015693.1 PFAM: Nickel-dependent hydrogenase; COGs: COG1740 Ni Fe-hydrogenase I small subunit; InterPro IPR006137; KEGG: sli:Slin_3887 NADH ubiquinone oxidoreductase 20 kDa subunit; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; PRIAM: Hydrogenase (acceptor); SPTR: NADH ubiquinone oxidoreductase 20 kDa subunit; Cytochrome-c3 hydrogenase 13195 10860868 Runsl_5655 Runella slithyformis DSM 19594 Cytochrome-c3 hydrogenase YP_004646351.1 11600 R 761193 CDS YP_004646352.1 338209381 10860869 complement(13246..14229) 1 NC_015693.1 PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: hydrogenase (NiFe) small subunit (hydA); COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: sli:Slin_3888 TetR family transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; Hydrogenase (acceptor) 14229 10860869 Runsl_5656 Runella slithyformis DSM 19594 Hydrogenase (acceptor) YP_004646352.1 13246 R 761193 CDS YP_004646353.1 338209382 10860870 complement(14395..15015) 1 NC_015693.1 PFAM: Bacterial regulatory proteins, tetR family; KEGG: sli:Slin_3889 hypothetical protein; SPTR: Putative uncharacterized protein; TetR family transcriptional regulator 15015 10860870 Runsl_5657 Runella slithyformis DSM 19594 TetR family transcriptional regulator YP_004646353.1 14395 R 761193 CDS YP_004646354.1 338209383 10860871 complement(15022..15381) 1 NC_015693.1 InterPro IPR001647; KEGG: rbi:RB2501_04325 putative transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; hypothetical protein 15381 10860871 Runsl_5658 Runella slithyformis DSM 19594 hypothetical protein YP_004646354.1 15022 R 761193 CDS YP_004646355.1 338209384 10860872 complement(15447..16079) 1 NC_015693.1 PFAM: Bacterial regulatory proteins, tetR family; COGs: COG1259 conserved hypothetical protein; InterPro IPR003729; KEGG: sli:Slin_3873 hypothetical protein; PFAM: Protein of unknown function DUF151; SPTR: Putative uncharacterized protein; regulatory protein TetR 16079 10860872 Runsl_5659 Runella slithyformis DSM 19594 regulatory protein TetR YP_004646355.1 15447 R 761193 CDS YP_004646356.1 338209385 10860873 complement(16089..16634) 1 NC_015693.1 PFAM: Uncharacterised ACR, COG1259; KEGG: sli:Slin_3874 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 16634 10860873 Runsl_5660 Runella slithyformis DSM 19594 hypothetical protein YP_004646356.1 16089 R 761193 CDS YP_004646357.1 338209386 10860874 complement(16681..16905) 1 NC_015693.1 InterPro IPR001258; KEGG: sli:Slin_3876 NHL repeat containing protein; PFAM: NHL repeat; SPTR: NHL repeat containing protein; hypothetical protein 16905 10860874 Runsl_5661 Runella slithyformis DSM 19594 hypothetical protein YP_004646357.1 16681 R 761193 CDS YP_004646358.1 338209387 10860875 complement(16919..18031) 1 NC_015693.1 COGs: COG0309 Hydrogenase maturation factor; InterPro IPR011854:IPR000728:IPR010918; KEGG: sli:Slin_3877 hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; SPTR: Hydrogenase expression/formation protein HypE; TIGRFAM: Hydrogenase expression/formation protein HypE; NHL repeat containing protein 18031 10860875 Runsl_5662 Runella slithyformis DSM 19594 NHL repeat containing protein YP_004646358.1 16919 R 761193 CDS YP_004646359.1 338209388 10860876 complement(18103..19140) 1 NC_015693.1 PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: hydrogenase expression/formation protein HypE; COGs: COG0409 Hydrogenase maturation factor; InterPro IPR002780; KEGG: sli:Slin_3878 hydrogenase expression/formation protein HypD; PFAM: Hydrogenase formation HypD protein; SPTR: Hydrogenase expression/formation protein HypD; TIGRFAM: Hydrogenase formation HypD protein; hydrogenase expression/formation protein HypE 19140 10860876 Runsl_5663 Runella slithyformis DSM 19594 hydrogenase expression/formation protein HypE YP_004646359.1 18103 R 761193 CDS YP_004646360.1 338209389 10860877 complement(19242..20336) 1 NC_015693.1 PFAM: Hydrogenase formation hypA family; TIGRFAM: hydrogenase expression/formation protein HypD; COGs: COG0298 Hydrogenase maturation factor; InterPro IPR001109; KEGG: sli:Slin_3879 hydrogenase assembly chaperone HypC/HupF; PFAM: Hydrogenase expression/formation protein, HupF/HypC; SPTR: Hydrogenase assembly chaperone hypC/hupF; TIGRFAM: Hydrogenase expression/formation protein, HupF/HypC; hydrogenase expression/formation protein HypD 20336 10860877 Runsl_5664 Runella slithyformis DSM 19594 hydrogenase expression/formation protein HypD YP_004646360.1 19242 R 761193 CDS YP_004646361.1 338209390 10860878 complement(20372..20647) 1 NC_015693.1 PFAM: HupF/HypC family; TIGRFAM: hydrogenase assembly chaperone HypC/HupF; COGs: COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatase; InterPro IPR003672; KEGG: gur:Gura_0774 cobaltochelatase; PFAM: CobN/magnesium chelatase; PRIAM: Magnesium chelatase; SPTR: Cobaltochelatase CobN subunit; hydrogenase assembly chaperone hypC/hupF 20647 10860878 Runsl_5665 Runella slithyformis DSM 19594 hydrogenase assembly chaperone hypC/hupF YP_004646361.1 20372 R 761193 CDS YP_004646362.1 338209391 10860879 complement(20786..24778) 1 NC_015693.1 PFAM: CobN/Magnesium Chelatase; COGs: COG4744 conserved hypothetical protein; InterPro IPR018676; KEGG: dpr:Despr_3126 hypothetical protein; PFAM: Protein of unknown function DUF2149; SPTR: Putative uncharacterized protein; Magnesium chelatase 24778 10860879 Runsl_5666 Runella slithyformis DSM 19594 Magnesium chelatase YP_004646362.1 20786 R 761193 CDS YP_004646363.1 338209392 10860880 complement(24807..25163) 1 NC_015693.1 PFAM: Uncharacterized conserved protein (DUF2149); KEGG: mmz:MmarC7_1200 MotA/TolQ/ExbB proton channel; SPTR: Hypothetical membrane protein, MotA/TolQ/ExbB proton channel family; hypothetical protein 25163 10860880 Runsl_5667 Runella slithyformis DSM 19594 hypothetical protein YP_004646363.1 24807 R 761193 CDS YP_004646364.1 338209393 10860881 complement(25211..25774) 1 NC_015693.1 PFAM: MotA/TolQ/ExbB proton channel family; KEGG: sli:Slin_3875 urease accessory protein; SPTR: Putative urease accessory protein; MotA/TolQ/ExbB proton channel 25774 10860881 Runsl_5668 Runella slithyformis DSM 19594 MotA/TolQ/ExbB proton channel YP_004646364.1 25211 R 761193 CDS YP_004646365.1 338209394 10860882 complement(25873..26499) 1 NC_015693.1 PFAM: High-affinity nickel-transport protein; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_5364 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; urease accessory protein 26499 10860882 Runsl_5669 Runella slithyformis DSM 19594 urease accessory protein YP_004646365.1 25873 R 761193 CDS YP_004646366.1 338209395 10860883 complement(26568..28820) 1 NC_015693.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG0068 Hydrogenase maturation factor; InterPro IPR004421:IPR001792:IPR011125:IPR006070; KEGG: sli:Slin_3880 (NiFe) hydrogenase maturation protein HypF; PFAM: Sua5/YciO/YrdC, N-terminal; Acylphosphatase-like; Zinc finger, HypF-type; SPTR: (NiFe) hydrogenase maturation protein HypF; TIGRFAM: Hydrogenase maturation factor, HypF-type; TonB-dependent receptor 28820 10860883 Runsl_5670 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004646366.1 26568 R 761193 CDS YP_004646367.1 338209396 10860884 complement(28903..31257) 1 NC_015693.1 PFAM: HypF finger; yrdC domain; Acylphosphatase; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; COGs: COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; InterPro IPR004392:IPR003495; KEGG: sli:Slin_3881 hydrogenase accessory protein HypB; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; SPTR: Hydrogenase accessory protein HypB; TIGRFAM: Hydrogenase accessory protein HypB; (NiFe) hydrogenase maturation protein HypF 31257 10860884 Runsl_5671 Runella slithyformis DSM 19594 (NiFe) hydrogenase maturation protein HypF YP_004646367.1 28903 R 761193 CDS YP_004646368.1 338209397 10860885 complement(31259..31960) 1 NC_015693.1 PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: hydrogenase accessory protein HypB; COGs: COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); InterPro IPR000688; KEGG: sli:Slin_3882 hydrogenase expression/synthesis HypA; PFAM: Hydrogenase nickel incorporation protein HypA/HybF; SPTR: Hydrogenase expression/synthesis HypA; hydrogenase accessory protein HypB 31960 10860885 Runsl_5672 Runella slithyformis DSM 19594 hydrogenase accessory protein HypB YP_004646368.1 31259 R 761193 CDS YP_004646369.1 338209398 10860886 complement(31999..32340) 1 NC_015693.1 PFAM: Hydrogenase expression/synthesis hypA family; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: cbe:Cbei_3584 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1; SPTR: Proline iminopeptidase-like protein; hydrogenase expression/synthesis HypA 32340 10860886 Runsl_5673 Runella slithyformis DSM 19594 hydrogenase expression/synthesis HypA YP_004646369.1 31999 R 761193 CDS YP_004646370.1 338209399 10860887 32834..33910 1 NC_015693.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 33910 10860887 Runsl_5674 Runella slithyformis DSM 19594 alpha/beta hydrolase fold protein YP_004646370.1 32834 D 761193 CDS YP_004646371.1 338209400 10860888 33966..34550 1 NC_015693.1 COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: npu:Npun_F0634 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; hypothetical protein 34550 10860888 Runsl_5675 Runella slithyformis DSM 19594 hypothetical protein YP_004646371.1 33966 D 761193 CDS YP_004646372.1 338209401 10860889 34563..35750 1 NC_015693.1 PFAM: Beta-lactamase; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sus:Acid_0065 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase, putative; beta-lactamase 35750 10860889 Runsl_5676 Runella slithyformis DSM 19594 beta-lactamase YP_004646372.1 34563 D 761193 CDS YP_004646373.1 338209402 10860890 35852..37366 1 NC_015693.1 PFAM: Beta-lactamase; KEGG: sli:Slin_2780 hypothetical protein; SPTR: Putative uncharacterized protein; beta-lactamase 37366 10860890 Runsl_5677 Runella slithyformis DSM 19594 beta-lactamase YP_004646373.1 35852 D 761193 CDS YP_004646374.1 338209403 10860891 37491..38351 1 NC_015693.1 TIGRFAM: YD repeat (two copies); COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_1794 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; hypothetical protein 38351 10860891 Runsl_5678 Runella slithyformis DSM 19594 hypothetical protein YP_004646374.1 37491 D 761193 CDS YP_004646375.1 338209404 10860892 38455..39219 1 NC_015693.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_4868 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; LytTR family two component transcriptional regulator 39219 10860892 Runsl_5679 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004646375.1 38455 D 761193 CDS YP_004646376.1 338209405 10860893 39252..40304 1 NC_015693.1 PFAM: Histidine kinase; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_4868 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; putative signal transduction histidine kinase 40304 10860893 Runsl_5680 Runella slithyformis DSM 19594 putative signal transduction histidine kinase YP_004646376.1 39252 D 761193 CDS YP_004646377.1 338209406 10860894 40301..41341 1 NC_015693.1 PFAM: Histidine kinase; COGs: COG0684 Demethylmenaquinone methyltransferase; InterPro IPR005493; KEGG: caa:Caka_0515 dimethylmenaquinone methyltransferase; PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; SPTR: Putative uncharacterized protein; putative signal transduction histidine kinase 41341 10860894 Runsl_5681 Runella slithyformis DSM 19594 putative signal transduction histidine kinase YP_004646377.1 40301 D 761193 CDS YP_004646378.1 338209407 10860895 complement(41692..42435) 1 NC_015693.1 PFAM: Demethylmenaquinone methyltransferase; COGs: COG3386 Gluconolactonase; InterPro IPR013658; KEGG: ttr:Tter_2396 SMP-30/gluconolaconase/LRE domain protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; SPTR: Possible Gluconolactonase; Dimethylmenaquinone methyltransferase 42435 10860895 Runsl_5682 Runella slithyformis DSM 19594 Dimethylmenaquinone methyltransferase YP_004646378.1 41692 R 761193 CDS YP_004646379.1 338209408 10860896 complement(42489..43307) 1 NC_015693.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: phe:Phep_2598 major facilitator superfamily protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Putative uncharacterized protein; SMP-30/gluconolaconase/LRE-like region-containing protein 43307 10860896 Runsl_5683 Runella slithyformis DSM 19594 SMP-30/gluconolaconase/LRE-like region-containing protein YP_004646379.1 42489 R 761193 CDS YP_004646380.1 338209409 10860897 complement(43310..44575) 1 NC_015693.1 PFAM: Major Facilitator Superfamily; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104; KEGG: dtu:Dtur_1802 beta-mannosidase; PFAM: Glycoside hydrolase family 2, carbohydrate-binding; PRIAM: Beta-mannosidase; SPTR: Putative uncharacterized protein; major facilitator superfamily protein 44575 10860897 Runsl_5684 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004646380.1 43310 R 761193 CDS YP_004646381.1 338209410 10860898 complement(44572..47475) 1 NC_015693.1 PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: psa:PST_3895 short chain dehydrogenase/reductase family oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Oxidoreductase, short-chain dehydrogenase/reductase family; beta-mannosidase 47475 10860898 Runsl_5685 Runella slithyformis DSM 19594 beta-mannosidase YP_004646381.1 44572 R 761193 CDS YP_004646382.1 338209411 10860899 complement(47513..48304) 1 NC_015693.1 PFAM: short chain dehydrogenase; KEGG: coc:Coch_1013 hypothetical protein; SPTR: Putative uncharacterized protein; 3-oxoacyl-(acyl-carrier-protein) reductase 48304 10860899 Runsl_5686 Runella slithyformis DSM 19594 3-oxoacyl-(acyl-carrier-protein) reductase YP_004646382.1 47513 R 761193 CDS YP_004646383.1 338209412 10860900 complement(48306..49733) 1 NC_015693.1 PFAM: Cellulase (glycosyl hydrolase family 5); COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341:IPR013342; KEGG: smd:Smed_5845 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; PRIAM: Glucarate dehydratase; SPTR: Mandelate racemase/muconate lactonizing protein; hypothetical protein 49733 10860900 Runsl_5687 Runella slithyformis DSM 19594 hypothetical protein YP_004646383.1 48306 R 761193 CDS YP_004646384.1 338209413 10860901 complement(49745..50935) 1 NC_015693.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; COGs: COG3693 Beta-1 4-xylanase; InterPro IPR001000; KEGG: ote:Oter_3662 glycoside hydrolase family protein; PFAM: Glycoside hydrolase, family 10; SMART: Glycoside hydrolase, family 10; SPTR: Glycoside hydrolase family 10; glucarate dehydratase 50935 10860901 Runsl_5688 Runella slithyformis DSM 19594 glucarate dehydratase YP_004646384.1 49745 R 761193 CDS YP_004646385.1 338209414 10860902 complement(50967..52295) 1 NC_015693.1 PFAM: Glycosyl hydrolase family 10; KEGG: plm:Plim_0289 hypothetical protein; SPTR: Putative uncharacterized protein; glycoside hydrolase family 10 52295 10860902 Runsl_5689 Runella slithyformis DSM 19594 glycoside hydrolase family 10 YP_004646385.1 50967 R 761193 CDS YP_004646386.1 338209415 10860903 complement(52300..53190) 1 NC_015693.1 InterPro IPR012944; KEGG: dfe:Dfer_0713 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; hypothetical protein 53190 10860903 Runsl_5690 Runella slithyformis DSM 19594 hypothetical protein YP_004646386.1 52300 R 761193 CDS YP_004646387.1 338209416 10860904 complement(53196..54656) 1 NC_015693.1 PFAM: SusD family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_0714 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; RagB/SusD domain-containing protein 54656 10860904 Runsl_5691 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004646387.1 53196 R 761193 CDS YP_004646388.1 338209417 10860905 complement(54721..57708) 1 NC_015693.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG1414 Transcriptional regulator; InterPro IPR005471; KEGG: psn:Pedsa_0488 transcriptional regulator, IclR family; PFAM: Transcriptional regulator IclR, N-terminal; SMART: Transcriptional regulator IclR, N-terminal; SPTR: Putative uncharacterized protein; TonB-dependent receptor plug 57708 10860905 Runsl_5692 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004646388.1 54721 R 761193 CDS YP_004646389.1 338209418 10860906 complement(57900..58637) 1 NC_015693.1 PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator; IclR family transcriptional regulator 58637 10860906 Runsl_5693 Runella slithyformis DSM 19594 IclR family transcriptional regulator YP_004646389.1 57900 R 761193 CDS YP_004646390.1 338209419 10860907 58758..58925 1 NC_015693.1 hypothetical protein 58925 10860907 Runsl_5694 Runella slithyformis DSM 19594 hypothetical protein YP_004646390.1 58758 D 761193 CDS YP_004646391.1 338209420 10860908 complement(58896..59408) 1 NC_015693.1 hypothetical protein 59408 10860908 Runsl_5695 Runella slithyformis DSM 19594 hypothetical protein YP_004646391.1 58896 R 761193 CDS YP_004646392.1 338209421 10860909 59748..60383 1 NC_015693.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627; KEGG: pbs:Plabr_0594 RNA polymerase, sigma subunit, ECF family; PFAM: RNA polymerase sigma-70 region 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; hypothetical protein 60383 10860909 Runsl_5696 Runella slithyformis DSM 19594 hypothetical protein YP_004646392.1 59748 D 761193 CDS YP_004646393.1 338209422 10860910 60388..61200 1 NC_015693.1 PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; manually curated; ECF subfamily RNA polymerase sigma-24 subunit 61200 10860910 Runsl_5697 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004646393.1 60388 D 761193 CDS YP_004646394.1 338209423 10860912 61408..61563 1 NC_015693.1 KEGG: sli:Slin_3648 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 61563 10860912 Runsl_5699 Runella slithyformis DSM 19594 hypothetical protein YP_004646394.1 61408 D 761193 CDS YP_004646395.1 338209424 10860913 complement(61918..62757) 1 NC_015693.1 COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: sli:Slin_3649 cobyrinic acid ac-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Cobyrinic acid ac-diamide synthase; hypothetical protein 62757 10860913 Runsl_5700 Runella slithyformis DSM 19594 hypothetical protein YP_004646395.1 61918 R 761193 CDS YP_004646396.1 338209425 10860914 complement(62771..63715) 1 NC_015693.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; COGs: COG5527 Protein involved in initiation of plasmid replication; InterPro IPR000525; KEGG: sli:Slin_7066 initiator RepB protein; PFAM: Initiator Rep protein; SPTR: Initiator RepB protein; Cobyrinic acid ac-diamide synthase 63715 10860914 Runsl_5701 Runella slithyformis DSM 19594 Cobyrinic acid ac-diamide synthase YP_004646396.1 62771 R 761193 CDS YP_004646397.1 338209426 10860915 64365..65267 1 NC_015693.1 PFAM: Initiator Replication protein; manually curated; initiator RepB protein 65267 10860915 Runsl_5702 Runella slithyformis DSM 19594 initiator RepB protein YP_004646397.1 64365 D 761193 CDS YP_004646398.1 338209427 10860919 complement(66551..66790) 1 NC_015693.1 COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: dfe:Dfer_3737 AAA ATPase; SMART: ATPase, AAA+ type, core; SPTR: AAA ATPase; hypothetical protein 66790 10860919 Runsl_5706 Runella slithyformis DSM 19594 hypothetical protein YP_004646398.1 66551 R 761193 CDS YP_004646399.1 338209428 10860920 67009..68181 1 NC_015693.1 AAA ATPase 68181 10860920 Runsl_5707 Runella slithyformis DSM 19594 AAA ATPase YP_004646399.1 67009 D 761193 CDS YP_004646400.1 338209429 10860921 68429..68749 1 NC_015693.1 hypothetical protein 68749 10860921 Runsl_5708 Runella slithyformis DSM 19594 hypothetical protein YP_004646400.1 68429 D 761193 CDS YP_004646401.1 338209430 10860922 complement(68741..69037) 1 NC_015693.1 COGs: COG2141 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase; InterPro IPR016048; KEGG: sli:Slin_3890 luciferase-like protein; PFAM: Luciferase-like, subgroup; SPTR: Luciferase-like, subgroup; TIGRFAM: putative oxidoreductase, LLM family; hypothetical protein 69037 10860922 Runsl_5709 Runella slithyformis DSM 19594 hypothetical protein YP_004646401.1 68741 R 761193 CDS YP_004646402.1 338209431 10860923 complement(69501..70529) 1 NC_015693.1 PFAM: Luciferase-like monooxygenase; TIGRFAM: probable oxidoreductase, LLM family; putative oxidoreductase, LLM family 70529 10860923 Runsl_5710 Runella slithyformis DSM 19594 putative oxidoreductase, LLM family YP_004646402.1 69501 R 761193 CDS YP_004646403.1 338209432 10860924 complement(70906..71082) 1 NC_015693.1 COGs: COG2603 ATPase; InterPro IPR017582:IPR001763; KEGG: sli:Slin_4991 tRNA 2-selenouridine synthase; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: tRNA 2-selenouridine synthase; TIGRFAM: tRNA 2-selenouridine synthase; hypothetical protein 71082 10860924 Runsl_5711 Runella slithyformis DSM 19594 hypothetical protein YP_004646403.1 70906 R 761193 CDS YP_004646404.1 338209433 10860925 71199..72242 1 NC_015693.1 PFAM: Rhodanese-like domain; TIGRFAM: tRNA 2-selenouridine synthase; COGs: COG0709 Selenophosphate synthase; HAMAP: Selenide, water dikinase; InterPro IPR004536:IPR000728:IPR010918; KEGG: sli:Slin_3011 selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal; SPTR: Selenide, water dikinase; TIGRFAM: Selenide water dikinase; tRNA 2-selenouridine synthase 72242 10860925 Runsl_5712 Runella slithyformis DSM 19594 tRNA 2-selenouridine synthase YP_004646404.1 71199 D 761193 CDS YP_004646405.1 338209434 10860926 72252..73292 1 NC_015693.1 PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: selenium donor protein; KEGG: sli:Slin_0591 hypothetical protein; SPTR: Putative uncharacterized protein; Selenide, water dikinase 73292 10860926 Runsl_5713 Runella slithyformis DSM 19594 Selenide, water dikinase YP_004646405.1 72252 D 761193 CDS YP_004646406.1 338209435 10860927 73496..74473 1 NC_015693.1 PFAM: Trehalose utilisation; KEGG: plm:Plim_4136 hypothetical protein; SPTR: Acyl-CoA thioesterase I-like protein; hypothetical protein 74473 10860927 Runsl_5714 Runella slithyformis DSM 19594 hypothetical protein YP_004646406.1 73496 D 761193 CDS YP_004646407.1 338209436 10860928 74536..75786 1 NC_015693.1 hypothetical protein 75786 10860928 Runsl_5715 Runella slithyformis DSM 19594 hypothetical protein YP_004646407.1 74536 D 761193 CDS YP_004646408.1 338209437 10860929 75826..75963 1 NC_015693.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR000014:IPR001610:IPR003661:IPR003594:IPR013767:IPR0136 55:IPR013656; KEGG: sli:Slin_0618 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-3; PAS fold; PAS fold-4; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; hypothetical protein 75963 10860929 Runsl_5716 Runella slithyformis DSM 19594 hypothetical protein YP_004646408.1 75826 D 761193 CDS YP_004646409.1 338209438 10860930 complement(75955..78996) 1 NC_015693.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; KEGG: dfe:Dfer_2112 hypothetical protein; SPTR: Putative uncharacterized protein; PAS/PAC sensor signal transduction histidine kinase 78996 10860930 Runsl_5717 Runella slithyformis DSM 19594 PAS/PAC sensor signal transduction histidine kinase YP_004646409.1 75955 R 761193 CDS YP_004646410.1 338209439 10860931 complement(79450..79926) 1 NC_015693.1 InterPro IPR001077; KEGG: sli:Slin_6371 O-methyltransferase family 2; PFAM: O-methyltransferase, family 2; SPTR: O-methyltransferase family 2; hypothetical protein 79926 10860931 Runsl_5718 Runella slithyformis DSM 19594 hypothetical protein YP_004646410.1 79450 R 761193 CDS YP_004646411.1 338209440 10860932 80162..81226 1 NC_015693.1 PFAM: O-methyltransferase; COGs: COG1260 Myo-inositol-1-phosphate synthase; InterPro IPR002587:IPR013021; KEGG: cpi:Cpin_2400 inositol-3-phosphate synthase; PFAM: Myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase, GAPDH-like; PRIAM: Inositol-3-phosphate synthase; SPTR: Inositol-3-phosphate synthase; O-methyltransferase family 2 81226 10860932 Runsl_5719 Runella slithyformis DSM 19594 O-methyltransferase family 2 YP_004646411.1 80162 D 761193 CDS YP_004646412.1 338209441 10860933 81503..82840 1 NC_015693.1 PFAM: Myo-inositol-1-phosphate synthase; InterPro IPR005181:IPR006104:IPR002509; KEGG: sli:Slin_1717 hypothetical protein; PFAM: Protein of unknown function DUF303, acetylesterase putative; Glycoside hydrolase family 2, carbohydrate-binding; Polysaccharide deacetylase; SPTR: Putative uncharacterized protein; Inositol-3-phosphate synthase 82840 10860933 Runsl_5720 Runella slithyformis DSM 19594 Inositol-3-phosphate synthase YP_004646412.1 81503 D 761193 CDS YP_004646413.1 338209442 10860934 complement(83303..85975) 1 NC_015693.1 PFAM: Domain of unknown function (DUF303); Polysaccharide deacetylase; Glycosyl hydrolases family 2, sugar binding domain; COGs: COG3693 Beta-1 4-xylanase; InterPro IPR001000; KEGG: ppn:Palpr_2306 EndO-1,4-beta-xylanase; PFAM: Glycoside hydrolase, family 10; PRIAM: Endo-1,4-beta-xylanase; SMART: Glycoside hydrolase, family 10; SPTR: Endo-1,4-beta-xylanase; hypothetical protein 85975 10860934 Runsl_5721 Runella slithyformis DSM 19594 hypothetical protein YP_004646413.1 83303 R 761193 CDS YP_004646414.1 338209443 10860935 complement(86016..87158) 1 NC_015693.1 PFAM: Glycosyl hydrolase family 10; InterPro IPR006710; KEGG: cao:Celal_0855 xylan 1,4-beta-xylosidase; PFAM: Glycoside hydrolase, family 43; PRIAM: Xylan 1,4-beta-xylosidase; SPTR: Xylan 1,4-beta-xylosidase; endo-1,4-beta-xylanase 87158 10860935 Runsl_5722 Runella slithyformis DSM 19594 endo-1,4-beta-xylanase YP_004646414.1 86016 R 761193 CDS YP_004646415.1 338209444 10860936 complement(87218..88252) 1 NC_015693.1 PFAM: Glycosyl hydrolases family 43; COGs: COG2211 Na+/melibiose symporter and related transporter; InterPro IPR001927:IPR011701; KEGG: fjo:Fjoh_1997 sugar (glycoside-pentoside-hexuronide) transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Sugar (Glycoside-Pentoside-Hexuronide) transporter; TIGRFAM: Sodium:galactoside symporter; Xylan 1,4-beta-xylosidase 88252 10860936 Runsl_5723 Runella slithyformis DSM 19594 Xylan 1,4-beta-xylosidase YP_004646415.1 87218 R 761193 CDS YP_004646416.1 338209445 10860937 complement(88437..89855) 1 NC_015693.1 PFAM: Major Facilitator Superfamily; TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; COGs: COG3693 Beta-1 4-xylanase; InterPro IPR001000; KEGG: sli:Slin_1404 endo-1,4-beta-xylanase; PFAM: Glycoside hydrolase, family 10; PRIAM: Endo-1,4-beta-xylanase; SMART: Glycoside hydrolase, family 10; SPTR: Endo-1,4-beta-xylanase; sugar (glycoside-Pentoside-Hexuronide) transporter 89855 10860937 Runsl_5724 Runella slithyformis DSM 19594 sugar (glycoside-Pentoside-Hexuronide) transporter YP_004646416.1 88437 R 761193 CDS YP_004646417.1 338209446 10860938 complement(90523..91626) 1 NC_015693.1 PFAM: Glycosyl hydrolase family 10; KEGG: ppn:Palpr_1422 hypothetical protein; SPTR: Putative uncharacterized protein; endo-1,4-beta-xylanase 91626 10860938 Runsl_5725 Runella slithyformis DSM 19594 endo-1,4-beta-xylanase YP_004646417.1 90523 R 761193 CDS YP_004646418.1 338209447 10860939 complement(91702..92067) 1 NC_015693.1 COGs: COG2382 Enterochelin esterase; InterPro IPR000801:IPR004193; KEGG: sli:Slin_1407 esterase; PFAM: Putative esterase; Glycoside hydrolase, family 13, N-terminal; SPTR: Putative esterase; hypothetical protein 92067 10860939 Runsl_5726 Runella slithyformis DSM 19594 hypothetical protein YP_004646418.1 91702 R 761193 CDS YP_004646419.1 338209448 10860940 complement(92068..93993) 1 NC_015693.1 PFAM: Putative esterase; COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: sli:Slin_1411 esterase; PFAM: Putative esterase; SPTR: Putative esterase; esterase 93993 10860940 Runsl_5727 Runella slithyformis DSM 19594 esterase YP_004646419.1 92068 R 761193 CDS YP_004646420.1 338209449 10860941 complement(94020..95135) 1 NC_015693.1 PFAM: Putative esterase; COGs: COG2382 Enterochelin esterase; InterPro IPR004193:IPR000801; KEGG: sli:Slin_1412 esterase; PFAM: Putative esterase; Glycoside hydrolase, family 13, N-terminal; SPTR: Putative esterase; esterase 95135 10860941 Runsl_5728 Runella slithyformis DSM 19594 esterase YP_004646420.1 94020 R 761193 CDS YP_004646421.1 338209450 10860942 complement(95381..96460) 1 NC_015693.1 PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Putative esterase; COGs: COG2382 Enterochelin esterase; InterPro IPR004193:IPR000801; KEGG: sli:Slin_1413 esterase; PFAM: Putative esterase; Glycoside hydrolase, family 13, N-terminal; SPTR: Putative esterase; esterase 96460 10860942 Runsl_5729 Runella slithyformis DSM 19594 esterase YP_004646421.1 95381 R 761193 CDS YP_004646422.1 338209451 10860943 complement(96475..97638) 1 NC_015693.1 PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Putative esterase; COGs: COG2382 Enterochelin esterase; InterPro IPR004193:IPR000801; KEGG: sli:Slin_1414 esterase; PFAM: Putative esterase; Glycoside hydrolase, family 13, N-terminal; SPTR: Putative esterase; esterase 97638 10860943 Runsl_5730 Runella slithyformis DSM 19594 esterase YP_004646422.1 96475 R 761193 CDS YP_004646423.1 338209452 10860944 complement(97669..98787) 1 NC_015693.1 PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Putative esterase; COGs: COG2272 Carboxylesterase type B; InterPro IPR005181:IPR002018; KEGG: ppn:Palpr_1657 carboxylesterase type B; PFAM: Carboxylesterase, type B; Protein of unknown function DUF303, acetylesterase putative; PRIAM: Acetylcholinesterase; SPTR: Carboxylesterase type B; esterase 98787 10860944 Runsl_5731 Runella slithyformis DSM 19594 esterase YP_004646423.1 97669 R 761193 CDS YP_004646424.1 338209453 10860945 complement(98813..101173) 1 NC_015693.1 PFAM: Domain of unknown function (DUF303); Carboxylesterase; COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: sli:Slin_1420 glycoside hydrolase family 43; PFAM: Glycoside hydrolase, family 43; SPTR: Glycoside hydrolase family 43; acetylcholinesterase 101173 10860945 Runsl_5732 Runella slithyformis DSM 19594 acetylcholinesterase YP_004646424.1 98813 R 761193 CDS YP_004646425.1 338209454 10860946 complement(101293..102867) 1 NC_015693.1 PFAM: Glycosyl hydrolases family 43; COGs: COG3533 conserved hypothetical protein; InterPro IPR012878; KEGG: sli:Slin_1422 hypothetical protein; PFAM: Protein of unknown function DUF1680; SPTR: Putative uncharacterized protein; glycoside hydrolase family 43 102867 10860946 Runsl_5733 Runella slithyformis DSM 19594 glycoside hydrolase family 43 YP_004646425.1 101293 R 761193 CDS YP_004646426.1 338209455 10860947 complement(102944..105226) 1 NC_015693.1 PFAM: Putative glycosyl hydrolase of unknown function (DUF1680); COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: sli:Slin_1423 xylan 1,4-beta-xylosidase; PFAM: Glycoside hydrolase, family 43; PRIAM: Alpha-N-arabinofuranosidase; SPTR: Xylan 1,4-beta-xylosidase; hypothetical protein 105226 10860947 Runsl_5734 Runella slithyformis DSM 19594 hypothetical protein YP_004646426.1 102944 R 761193 CDS YP_004646427.1 338209456 10860948 complement(105241..106914) 1 NC_015693.1 PFAM: Glycosyl hydrolases family 43; Signal predicted by SignalP 3.0 HMM; IMG reference gene:2505788930_SP; alpha-N-arabinofuranosidase 106914 10860948 Runsl_5735 Runella slithyformis DSM 19594 alpha-N-arabinofuranosidase YP_004646427.1 105241 R 761193 CDS YP_004646428.1 338209458 10863083 1030..1659 1 NC_015694.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; Cobyrinic acid ac-diamide synthase 1659 10863083 Runsl_5814 Runella slithyformis DSM 19594 Cobyrinic acid ac-diamide synthase YP_004646428.1 1030 D 761193 CDS YP_004646429.1 338209459 10863014 1736..2005 1 NC_015694.1 hypothetical protein 2005 10863014 Runsl_5815 Runella slithyformis DSM 19594 hypothetical protein YP_004646429.1 1736 D 761193 CDS YP_004646430.1 338209460 10863082 complement(2112..2513) 1 NC_015694.1 KEGG: dfe:Dfer_5228 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2513 10863082 Runsl_5816 Runella slithyformis DSM 19594 hypothetical protein YP_004646430.1 2112 R 761193 CDS YP_004646431.1 338209461 10863015 complement(2515..3282) 1 NC_015694.1 hypothetical protein 3282 10863015 Runsl_5817 Runella slithyformis DSM 19594 hypothetical protein YP_004646431.1 2515 R 761193 CDS YP_004646432.1 338209462 10863016 complement(3353..3715) 1 NC_015694.1 KEGG: pdi:BDI_2232 mobilization protein BmgB; SPTR: Mobilization protein BmgB; hypothetical protein 3715 10863016 Runsl_5818 Runella slithyformis DSM 19594 hypothetical protein YP_004646432.1 3353 R 761193 CDS YP_004646433.1 338209463 10863017 4048..4392 1 NC_015694.1 InterPro IPR005094; KEGG: pdi:BDI_2231 mobilization protein BmgA; PFAM: Endonuclease relaxase, MobA/VirD2; SPTR: Putative uncharacterized protein; mobilization protein BmgB 4392 10863017 Runsl_5819 Runella slithyformis DSM 19594 mobilization protein BmgB YP_004646433.1 4048 D 761193 CDS YP_004646434.1 338209464 10863018 4389..5408 1 NC_015694.1 PFAM: Relaxase/Mobilisation nuclease domain; COGs: COG3549 Plasmid maintenance system killer protein; InterPro IPR007711; KEGG: dfe:Dfer_2504 plasmid maintenance system killer; PFAM: Plasmid maintenance system killer; SPTR: Plasmid maintenance system killer; Relaxase/mobilization nuclease family protein 5408 10863018 Runsl_5820 Runella slithyformis DSM 19594 Relaxase/mobilization nuclease family protein YP_004646434.1 4389 D 761193 CDS YP_004646435.1 338209465 10863019 5855..6133 1 NC_015694.1 PFAM: Plasmid maintenance system killer protein; COGs: COG3093 Plasmid maintenance system antidote protein; InterPro IPR013430:IPR001387; KEGG: dfe:Dfer_2505 XRE family plasmid maintenance system antidote protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Plasmid maintenance system antidote protein, XRE family; TIGRFAM: Addiction module antidote protein, HigA; plasmid maintenance system killer 6133 10863019 Runsl_5821 Runella slithyformis DSM 19594 plasmid maintenance system killer YP_004646435.1 5855 D 761193 CDS YP_004646436.1 338209466 10863020 6149..6463 1 NC_015694.1 PFAM: Helix-turn-helix; TIGRFAM: addiction module antidote protein, HigA family; plasmid maintenance system antidote protein, XRE family 6463 10863020 Runsl_5822 Runella slithyformis DSM 19594 plasmid maintenance system antidote protein, XRE family YP_004646436.1 6149 D 761193 CDS YP_004646437.1 338209467 10863021 6661..7215 1 NC_015694.1 hypothetical protein 7215 10863021 Runsl_5823 Runella slithyformis DSM 19594 hypothetical protein YP_004646437.1 6661 D 761193 CDS YP_004646438.1 338209468 10863022 7243..7812 1 NC_015694.1 hypothetical protein 7812 10863022 Runsl_5824 Runella slithyformis DSM 19594 hypothetical protein YP_004646438.1 7243 D 761193 CDS YP_004646439.1 338209469 10863023 8202..8591 1 NC_015694.1 hypothetical protein 8591 10863023 Runsl_5825 Runella slithyformis DSM 19594 hypothetical protein YP_004646439.1 8202 D 761193 CDS YP_004646440.1 338209470 10863024 9025..9246 1 NC_015694.1 hypothetical protein 9246 10863024 Runsl_5826 Runella slithyformis DSM 19594 hypothetical protein YP_004646440.1 9025 D 761193 CDS YP_004646441.1 338209471 10863025 9382..9570 1 NC_015694.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: wvi:Weevi_1329 peptidase M23; PFAM: Peptidase M23; SPTR: NlpD; hypothetical protein 9570 10863025 Runsl_5827 Runella slithyformis DSM 19594 hypothetical protein YP_004646441.1 9382 D 761193 CDS YP_004646442.1 338209472 10863026 9567..10103 1 NC_015694.1 PFAM: Peptidase family M23; COGs: COG1864 DNA/RNA endonuclease G NUC1; InterPro IPR003961:IPR020821:IPR001604; KEGG: ava:Ava_4000 DNA/RNA non-specific endonuclease; PFAM: DNA/RNA non-specific endonuclease; Fibronectin, type III; SMART: Extracellular Endonuclease, subunit A; Fibronectin, type III; SPTR: DNA/RNA non-specific endonuclease; Peptidase M23 10103 10863026 Runsl_5828 Runella slithyformis DSM 19594 Peptidase M23 YP_004646442.1 9567 D 761193 CDS YP_004646443.1 338209473 10863027 10346..12361 1 NC_015694.1 PFAM: DNA/RNA non-specific endonuclease; Fibronectin type III domain; COGs: COG3505 Type IV secretory pathway VirD4 protein; InterPro IPR003688; KEGG: psn:Pedsa_1580 hypothetical protein; PFAM: TRAG protein; SPTR: TraG family protein; DNA/RNA non-specific endonuclease 12361 10863027 Runsl_5829 Runella slithyformis DSM 19594 DNA/RNA non-specific endonuclease YP_004646443.1 10346 D 761193 CDS YP_004646444.1 338209474 10863028 complement(12485..14491) 1 NC_015694.1 PFAM: TraG/TraD family; KEGG: bfs:pBF9343.47c putative plasmid transfer protein; SPTR: Conjugal transfer protein TraE; TRAG family protein 14491 10863028 Runsl_5830 Runella slithyformis DSM 19594 TRAG family protein YP_004646444.1 12485 R 761193 CDS YP_004646445.1 338209475 10863029 14605..14925 1 NC_015694.1 putative plasmid transfer protein 14925 10863029 Runsl_5831 Runella slithyformis DSM 19594 putative plasmid transfer protein YP_004646445.1 14605 D 761193 CDS YP_004646446.1 338209476 10863030 14976..15323 1 NC_015694.1 hypothetical protein 15323 10863030 Runsl_5832 Runella slithyformis DSM 19594 hypothetical protein YP_004646446.1 14976 D 761193 CDS YP_004646447.1 338209477 10863031 15326..15754 1 NC_015694.1 KEGG: lby:Lbys_0168 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 15754 10863031 Runsl_5833 Runella slithyformis DSM 19594 hypothetical protein YP_004646447.1 15326 D 761193 CDS YP_004646448.1 338209478 10863032 15759..16067 1 NC_015694.1 COGs: COG3451 Type IV secretory pathway VirB4 protein; KEGG: zpr:ZPR_3458 type IV secretory pathway VirB4 components-like protein; SPTR: Type IV secretory pathway VirB4 components-like protein; TIGRFAM: Bacteroides conjugation system ATPase, TraG family; hypothetical protein 16067 10863032 Runsl_5834 Runella slithyformis DSM 19594 hypothetical protein YP_004646448.1 15759 D 761193 CDS YP_004646449.1 338209479 10863033 16064..18559 1 NC_015694.1 PFAM: Domain of unknown function DUF87; TIGRFAM: Bacteroides conjugation system ATPase, TraG family; KEGG: psn:Pedsa_1679 hypothetical protein; SPTR: Putative uncharacterized protein; conjugation system ATPase, TraG family 18559 10863033 Runsl_5835 Runella slithyformis DSM 19594 conjugation system ATPase, TraG family YP_004646449.1 16064 D 761193 CDS YP_004646450.1 338209480 10863034 18598..19704 1 NC_015694.1 KEGG: fjo:Fjoh_4353 TraJ family protein conjugative transposon; SPTR: Homologues of TraJ from Bacteroides conjugative transposon; hypothetical protein 19704 10863034 Runsl_5836 Runella slithyformis DSM 19594 hypothetical protein YP_004646450.1 18598 D 761193 CDS YP_004646451.1 338209481 10863035 19683..20726 1 NC_015694.1 PFAM: TrbL/VirB6 plasmid conjugal transfer protein; hypothetical protein 20726 10863035 Runsl_5837 Runella slithyformis DSM 19594 hypothetical protein YP_004646451.1 19683 D 761193 CDS YP_004646452.1 338209482 10863036 20723..20956 1 NC_015694.1 KEGG: bsa:Bacsa_2556 conjugative transposon TraK protein; SPTR: Conjugative transposon TraK protein; TIGRFAM: Bacteroides conjugative transposon TraK protein; hypothetical protein 20956 10863036 Runsl_5838 Runella slithyformis DSM 19594 hypothetical protein YP_004646452.1 20723 D 761193 CDS YP_004646453.1 338209483 10863037 20922..21524 1 NC_015694.1 TIGRFAM: Bacteroides conjugative transposon TraK protein; conjugative transposon TraK protein 21524 10863037 Runsl_5839 Runella slithyformis DSM 19594 conjugative transposon TraK protein YP_004646453.1 20922 D 761193 CDS YP_004646454.1 338209484 10863038 21524..21706 1 NC_015694.1 KEGG: bsa:Bacsa_1115 conjugative transposon TraM protein; SPTR: Putative uncharacterized protein; hypothetical protein 21706 10863038 Runsl_5840 Runella slithyformis DSM 19594 hypothetical protein YP_004646454.1 21524 D 761193 CDS YP_004646455.1 338209485 10863039 21694..23049 1 NC_015694.1 PFAM: Protein of unknown function (DUF3714); TIGRFAM: Bacteroides conjugative transposon TraM protein; KEGG: bth:BT_2595 conjugate transposon protein; SPTR: Putative uncharacterized protein; TIGRFAM: Bacteroides conjugative transposon TraN protein; hypothetical protein 23049 10863039 Runsl_5841 Runella slithyformis DSM 19594 hypothetical protein YP_004646455.1 21694 D 761193 CDS YP_004646456.1 338209486 10863040 23033..23956 1 NC_015694.1 TIGRFAM: Bacteroides conjugative transposon TraN protein; KEGG: pgn:PGN_0593 putative conjugate transposon protein TraA; SPTR: TraO protein; conjugative transposon TraN protein 23956 10863040 Runsl_5842 Runella slithyformis DSM 19594 conjugative transposon TraN protein YP_004646456.1 23033 D 761193 CDS YP_004646457.1 338209487 10863041 23953..24528 1 NC_015694.1 PFAM: Conjugative transposon protein TraO; putative conjugate transposon protein TraA 24528 10863041 Runsl_5843 Runella slithyformis DSM 19594 putative conjugate transposon protein TraA YP_004646457.1 23953 D 761193 CDS YP_004646458.1 338209488 10863042 complement(24596..24745) 1 NC_015694.1 hypothetical protein 24745 10863042 Runsl_5844 Runella slithyformis DSM 19594 hypothetical protein YP_004646458.1 24596 R 761193 CDS YP_004646459.1 338209489 10863043 complement(24738..24887) 1 NC_015694.1 KEGG: pvi:Cvib_0123 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 24887 10863043 Runsl_5845 Runella slithyformis DSM 19594 hypothetical protein YP_004646459.1 24738 R 761193 CDS YP_004646460.1 338209490 10863044 24959..25528 1 NC_015694.1 PFAM: Protein of unknown function (DUF3127); InterPro IPR006119; KEGG: bsa:Bacsa_3704 resolvase domain; PFAM: Resolvase, N-terminal; SPTR: Putative uncharacterized protein; hypothetical protein 25528 10863044 Runsl_5846 Runella slithyformis DSM 19594 hypothetical protein YP_004646460.1 24959 D 761193 CDS YP_004646461.1 338209491 10863045 25665..26225 1 NC_015694.1 PFAM: Resolvase, N terminal domain; Resolvase domain-containing protein 26225 10863045 Runsl_5847 Runella slithyformis DSM 19594 Resolvase domain-containing protein YP_004646461.1 25665 D 761193 CDS YP_004646462.1 338209492 10863046 26552..26800 1 NC_015694.1 KEGG: sli:Slin_3349 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 26800 10863046 Runsl_5848 Runella slithyformis DSM 19594 hypothetical protein YP_004646462.1 26552 D 761193 CDS YP_004646463.1 338209493 10863047 26775..27335 1 NC_015694.1 hypothetical protein 27335 10863047 Runsl_5849 Runella slithyformis DSM 19594 hypothetical protein YP_004646463.1 26775 D 761193 CDS YP_004646464.1 338209494 10863048 complement(27587..27772) 1 NC_015694.1 hypothetical protein 27772 10863048 Runsl_5850 Runella slithyformis DSM 19594 hypothetical protein YP_004646464.1 27587 R 761193 CDS YP_004646465.1 338209495 10863049 complement(27769..28008) 1 NC_015694.1 COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: bfr:BF3681 C-5 cytosine-specific DNA-methylase; PFAM: DNA methylase, C-5 cytosine-specific; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA methylase, C-5 cytosine-specific; hypothetical protein 28008 10863049 Runsl_5851 Runella slithyformis DSM 19594 hypothetical protein YP_004646465.1 27769 R 761193 CDS YP_004646466.1 338209496 10863050 28188..29405 1 NC_015694.1 PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); KEGG: cph:Cpha266_0081 hypothetical protein; SPTR: Putative uncharacterized protein; DNA-cytosine methyltransferase 29405 10863050 Runsl_5852 Runella slithyformis DSM 19594 DNA-cytosine methyltransferase YP_004646466.1 28188 D 761193 CDS YP_004646467.1 338209497 10863051 29402..30703 1 NC_015694.1 hypothetical protein 30703 10863051 Runsl_5853 Runella slithyformis DSM 19594 hypothetical protein YP_004646467.1 29402 D 761193 CDS YP_004646468.1 338209498 10863052 30687..30845 1 NC_015694.1 KEGG: sli:Slin_2296 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 30845 10863052 Runsl_5854 Runella slithyformis DSM 19594 hypothetical protein YP_004646468.1 30687 D 761193 CDS YP_004646469.1 338209499 10863053 30894..31283 1 NC_015694.1 hypothetical protein 31283 10863053 Runsl_5855 Runella slithyformis DSM 19594 hypothetical protein YP_004646469.1 30894 D 761193 CDS YP_004646470.1 338209500 10863054 31394..32164 1 NC_015694.1 KEGG: bpt:Bpet4501 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 32164 10863054 Runsl_5856 Runella slithyformis DSM 19594 hypothetical protein YP_004646470.1 31394 D 761193 CDS YP_004646471.1 338209501 10863055 32161..32562 1 NC_015694.1 manually curated; hypothetical protein 32562 10863055 Runsl_5857 Runella slithyformis DSM 19594 hypothetical protein YP_004646471.1 32161 D 761193 CDS YP_004646472.1 338209502 10863057 33700..34800 1 NC_015694.1 PFAM: Metallo-beta-lactamase superfamily; InterPro IPR004027; KEGG: psn:Pedsa_1884 sec-C motif domain protein; PFAM: SEC-C motif; SPTR: SEC-C motif domain protein; hypothetical protein 34800 10863057 Runsl_5859 Runella slithyformis DSM 19594 hypothetical protein YP_004646472.1 33700 D 761193 CDS YP_004646473.1 338209503 10863058 34775..35437 1 NC_015694.1 PFAM: SEC-C motif; KEGG: sat:SYN_00502 hypothetical protein; SPTR: Putative uncharacterized protein; SEC-C motif domain-containing protein 35437 10863058 Runsl_5860 Runella slithyformis DSM 19594 SEC-C motif domain-containing protein YP_004646473.1 34775 D 761193 CDS YP_004646474.1 338209504 10863059 35441..36151 1 NC_015694.1 COGs: COG2333 hydrolase (metallo-beta-lactamase superfamily); KEGG: aba:Acid345_1139 metallo-beta-lactamase superfamily hydrolase; SPTR: Hydrolase (Metallo-beta-lactamase superfamily); hypothetical protein 36151 10863059 Runsl_5861 Runella slithyformis DSM 19594 hypothetical protein YP_004646474.1 35441 D 761193 CDS YP_004646475.1 338209505 10863060 36164..37195 1 NC_015694.1 SPTR: Putative uncharacterized protein; metallo-beta-lactamase superfamily hydrolase 37195 10863060 Runsl_5862 Runella slithyformis DSM 19594 metallo-beta-lactamase superfamily hydrolase YP_004646475.1 36164 D 761193 CDS YP_004646476.1 338209506 10863061 37201..37611 1 NC_015694.1 COGs: COG2333 hydrolase (metallo-beta-lactamase superfamily); KEGG: sbn:Sbal195_4563 beta-lactamase domain-containing protein; SPTR: Putative uncharacterized protein; hypothetical protein 37611 10863061 Runsl_5863 Runella slithyformis DSM 19594 hypothetical protein YP_004646476.1 37201 D 761193 CDS YP_004646477.1 338209507 10863062 37905..38978 1 NC_015694.1 PFAM: Metallo-beta-lactamase superfamily; KEGG: pgi:PG1202 hypothetical protein; SPTR: Putative uncharacterized protein; beta-lactamase domain-containing protein 38978 10863062 Runsl_5864 Runella slithyformis DSM 19594 beta-lactamase domain-containing protein YP_004646477.1 37905 D 761193 CDS YP_004646478.1 338209508 10863063 38971..43062 1 NC_015694.1 COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119; KEGG: sli:Slin_7010 resolvase domain protein; PFAM: Resolvase, N-terminal; SPTR: Resolvase domain protein; hypothetical protein 43062 10863063 Runsl_5865 Runella slithyformis DSM 19594 hypothetical protein YP_004646478.1 38971 D 761193 CDS YP_004646479.1 338209509 10863064 complement(43272..43961) 1 NC_015694.1 PFAM: Resolvase, N terminal domain; KEGG: fjo:Fjoh_3055 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated; Resolvase domain-containing protein 43961 10863064 Runsl_5866 Runella slithyformis DSM 19594 Resolvase domain-containing protein YP_004646479.1 43272 R 761193 CDS YP_004646480.1 338209510 10863065 complement(44339..44686) 1 NC_015694.1 InterPro IPR000594; KEGG: fjo:Fjoh_3056 hypothetical protein; PFAM: UBA/THIF-type NAD/FAD binding fold; SPTR: Uba/thif family NAD/fad binding fold protein; hypothetical protein 44686 10863065 Runsl_5867 Runella slithyformis DSM 19594 hypothetical protein YP_004646480.1 44339 R 761193 CDS YP_004646481.1 338209511 10863066 complement(44658..45845) 1 NC_015694.1 PFAM: ThiF family; KEGG: fjo:Fjoh_3057 hypothetical protein; SPTR: Putative uncharacterized protein; UBA/THIF-type NAD/FAD binding protein 45845 10863066 Runsl_5868 Runella slithyformis DSM 19594 UBA/THIF-type NAD/FAD binding protein YP_004646481.1 44658 R 761193 CDS YP_004646482.1 338209512 10863067 complement(45820..46518) 1 NC_015694.1 KEGG: deh:cbdb_A103 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 46518 10863067 Runsl_5869 Runella slithyformis DSM 19594 hypothetical protein YP_004646482.1 45820 R 761193 CDS YP_004646483.1 338209513 10863068 complement(46831..47967) 1 NC_015694.1 hypothetical protein 47967 10863068 Runsl_5870 Runella slithyformis DSM 19594 hypothetical protein YP_004646483.1 46831 R 761193 CDS YP_004646484.1 338209514 10863069 complement(47970..48347) 1 NC_015694.1 KEGG: deh:cbdb_A102 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 48347 10863069 Runsl_5871 Runella slithyformis DSM 19594 hypothetical protein YP_004646484.1 47970 R 761193 CDS YP_004646485.1 338209515 10863070 complement(48344..50749) 1 NC_015694.1 KEGG: deh:cbdb_A101 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 50749 10863070 Runsl_5872 Runella slithyformis DSM 19594 hypothetical protein YP_004646485.1 48344 R 761193 CDS YP_004646486.1 338209516 10863071 complement(50746..51681) 1 NC_015694.1 InterPro IPR001387; KEGG: deh:cbdb_B6 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Putative uncharacterized protein; hypothetical protein 51681 10863071 Runsl_5873 Runella slithyformis DSM 19594 hypothetical protein YP_004646486.1 50746 R 761193 CDS YP_004646487.1 338209517 10863072 complement(51678..52076) 1 NC_015694.1 PFAM: Helix-turn-helix; KEGG: ypb:YPTS_3418 hypothetical protein; SPTR: Putative uncharacterized protein; helix-turn-helix domain-containing protein 52076 10863072 Runsl_5874 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004646487.1 51678 R 761193 CDS YP_004646488.1 338209518 10863073 complement(52392..52883) 1 NC_015694.1 InterPro IPR006530; KEGG: wvi:Weevi_0867 rhs repeat-associated core domain protein; PFAM: YD repeat; SPTR: Cell well associated RhsD protein; TIGRFAM: RHS repeat-associated core domain; YD repeat; hypothetical protein 52883 10863073 Runsl_5875 Runella slithyformis DSM 19594 hypothetical protein YP_004646488.1 52392 R 761193 CDS YP_004646489.1 338209519 10863074 complement(52880..59407) 1 NC_015694.1 TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies); KEGG: azc:AZC_2635 hypothetical protein; SPTR: Fibronectin type III domain protein; RHS repeat-associated core domain-containing protein 59407 10863074 Runsl_5876 Runella slithyformis DSM 19594 RHS repeat-associated core domain-containing protein YP_004646489.1 52880 R 761193 CDS YP_004646490.1 338209520 10863075 complement(59404..61182) 1 NC_015694.1 KEGG: fal:FRAAL2567 hypothetical protein; SPTR: Putative secreted protein; hypothetical protein 61182 10863075 Runsl_5877 Runella slithyformis DSM 19594 hypothetical protein YP_004646490.1 59404 R 761193 CDS YP_004646491.1 338209521 10863076 complement(61210..62403) 1 NC_015694.1 InterPro IPR003615:IPR002711; KEGG: cyt:cce_4359 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: Putative uncharacterized protein; hypothetical protein 62403 10863076 Runsl_5878 Runella slithyformis DSM 19594 hypothetical protein YP_004646491.1 61210 R 761193 CDS YP_004646492.1 338209522 10863077 63167..63583 1 NC_015694.1 PFAM: HNH endonuclease; HNH endonuclease 63583 10863077 Runsl_5879 Runella slithyformis DSM 19594 HNH endonuclease YP_004646492.1 63167 D 761193 CDS YP_004646493.1 338209523 10863078 63605..63994 1 NC_015694.1 COGs: COG4227 Antirestriction protein; InterPro IPR013610; KEGG: sli:Slin_6843 domain of unknown function DUF1738; PFAM: Domain of unknown function DUF1738; SPTR: Putative uncharacterized protein; hypothetical protein 63994 10863078 Runsl_5880 Runella slithyformis DSM 19594 hypothetical protein YP_004646493.1 63605 D 761193 CDS YP_004646494.1 338209524 10863079 64136..65059 1 NC_015694.1 PFAM: Domain of unknown function (DUF1738); hypothetical protein 65059 10863079 Runsl_5881 Runella slithyformis DSM 19594 hypothetical protein YP_004646494.1 64136 D 761193 CDS YP_004646495.1 338209525 10863080 65654..65881 1 NC_015694.1 COGs: COG5527 Protein involved in initiation of plasmid replication; InterPro IPR000525; KEGG: sli:Slin_7050 initiator RepB protein; PFAM: Initiator Rep protein; SPTR: Initiator RepB protein; hypothetical protein 65881 10863080 Runsl_5882 Runella slithyformis DSM 19594 hypothetical protein YP_004646495.1 65654 D 761193 CDS YP_004646496.1 338209526 10863081 complement(65967..66884) 1 NC_015694.1 PFAM: Initiator Replication protein; Signal predicted by SignalP 3.0 HMM; IMG reference gene:2505789089_SP; initiator RepB protein 66884 10863081 Runsl_5883 Runella slithyformis DSM 19594 initiator RepB protein YP_004646496.1 65967 R 761193 CDS YP_004646497.1 338215005 10860986 140..1321 1 NC_015695.1 PFAM: Glycosyl transferases group 1; COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR001360:IPR005913; KEGG: cyj:Cyan7822_5881 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; Glycoside hydrolase, family 1; PRIAM: dTDP-4-dehydrorhamnose reductase; SPTR: dTDP-4-dehydrorhamnose reductase; UDP-galactopyranose mutase 1321 10860986 Runsl_5736 Runella slithyformis DSM 19594 UDP-galactopyranose mutase YP_004646497.1 140 D 761193 CDS YP_004646498.1 338215006 10860955 1373..3550 1 NC_015695.1 PFAM: RmlD substrate binding domain; Glycosyl hydrolase family 1; TIGRFAM: dTDP-4-dehydrorhamnose reductase; COGs: COG3685 conserved hypothetical protein; InterPro IPR010287; KEGG: fba:FIC_01702 protein of unknown function DUF892; PFAM: Protein of unknown function DUF892; SPTR: Putative uncharacterized protein; dTDP-4-dehydrorhamnose reductase 3550 10860955 Runsl_5737 Runella slithyformis DSM 19594 dTDP-4-dehydrorhamnose reductase YP_004646498.1 1373 D 761193 CDS YP_004646499.1 338215007 10860956 complement(3665..4243) 1 NC_015695.1 PFAM: Domain of unknown function (DUF892); COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: ttr:Tter_0621 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; manually curated; hypothetical protein 4243 10860956 Runsl_5738 Runella slithyformis DSM 19594 hypothetical protein YP_004646499.1 3665 R 761193 CDS YP_004646500.1 338215008 10860957 4411..5229 1 NC_015695.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG3040 Bacterial lipocalin; InterPro IPR013208; KEGG: chu:CHU_0414 outer membrane lipoprotein; PFAM: Lipocalin-like; SPTR: Outer membrane lipoprotein (Lipocalin); Xylose isomerase domain-containing protein TIM barrel 5229 10860957 Runsl_5739 Runella slithyformis DSM 19594 Xylose isomerase domain-containing protein TIM barrel YP_004646500.1 4411 D 761193 CDS YP_004646501.1 338215009 10860958 5307..5846 1 NC_015695.1 PFAM: Lipocalin-like domain; InterPro IPR010496; KEGG: dfe:Dfer_4250 protein of unknown function DUF1080; PFAM: Protein of unknown function DUF1080; SPTR: Putative uncharacterized protein; Lipocalin family protein 5846 10860958 Runsl_5740 Runella slithyformis DSM 19594 Lipocalin family protein YP_004646501.1 5307 D 761193 CDS YP_004646502.1 338215010 10860959 complement(5984..6844) 1 NC_015695.1 PFAM: Domain of Unknown Function (DUF1080); InterPro IPR013427:IPR004155; KEGG: dfe:Dfer_0143 heme-binding protein; PFAM: PBS lyase HEAT-like repeat; SPTR: Heme-binding protein; TIGRFAM: Putative haem-binding region; hypothetical protein 6844 10860959 Runsl_5741 Runella slithyformis DSM 19594 hypothetical protein YP_004646502.1 5984 R 761193 CDS YP_004646503.1 338215011 10860960 complement(6929..9649) 1 NC_015695.1 PFAM: Cytochrome c; PBS lyase HEAT-like repeat; TIGRFAM: putative heme-binding domain, Pirellula/Verrucomicrobium type; InterPro IPR001087; KEGG: sli:Slin_3845 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family; heme-binding protein 9649 10860960 Runsl_5742 Runella slithyformis DSM 19594 heme-binding protein YP_004646503.1 6929 R 761193 CDS YP_004646504.1 338215012 10860961 complement(9718..10542) 1 NC_015695.1 PFAM: GDSL-like Lipase/Acylhydrolase; COGs: COG2936 acyl esterase; InterPro IPR005674:IPR000383:IPR013736; KEGG: phe:Phep_3711 peptidase S15; SPTR: Peptidase S15; TIGRFAM: CocE/NonD hydrolase; G-D-S-L family lipolytic protein 10542 10860961 Runsl_5743 Runella slithyformis DSM 19594 G-D-S-L family lipolytic protein YP_004646504.1 9718 R 761193 CDS YP_004646505.1 338215013 10860962 complement(10557..12581) 1 NC_015695.1 PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: putative hydrolase, CocE/NonD family; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: sli:Slin_6665 integrase family protein; PFAM: Integrase, catalytic core, phage; SPTR: Integrase family protein; hydrolase CocE/NonD family protein 12581 10860962 Runsl_5744 Runella slithyformis DSM 19594 hydrolase CocE/NonD family protein YP_004646505.1 10557 R 761193 CDS YP_004646506.1 338215014 10860963 complement(12637..13818) 1 NC_015695.1 PFAM: Phage integrase family; COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: bvu:BVU_0570 hypothetical protein; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein; integrase family protein 13818 10860963 Runsl_5745 Runella slithyformis DSM 19594 integrase family protein YP_004646506.1 12637 R 761193 CDS YP_004646507.1 338215015 10860964 complement(13917..15113) 1 NC_015695.1 COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; HAMAP: DNA polymerase IV; InterPro IPR001126; KEGG: sli:Slin_1272 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like; PRIAM: DNA-directed DNA polymerase; SPTR: DNA polymerase IV; AAA ATPase 15113 10860964 Runsl_5746 Runella slithyformis DSM 19594 AAA ATPase YP_004646507.1 13917 R 761193 CDS YP_004646508.1 338215016 10860965 15268..16335 1 NC_015695.1 PFAM: impB/mucB/samB family C-terminal; impB/mucB/samB family; IMS family HHH motif; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR006311:IPR012307; KEGG: sli:Slin_1842 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; DNA polymerase IV 16335 10860965 Runsl_5747 Runella slithyformis DSM 19594 DNA polymerase IV YP_004646508.1 15268 D 761193 CDS YP_004646509.1 338215017 10860966 16515..17372 1 NC_015695.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: sli:Slin_1843 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; Xylose isomerase domain-containing protein TIM barrel 17372 10860966 Runsl_5748 Runella slithyformis DSM 19594 Xylose isomerase domain-containing protein TIM barrel YP_004646509.1 16515 D 761193 CDS YP_004646510.1 338215018 10860967 17414..18757 1 NC_015695.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold; COGs: COG3802 conserved hypothetical protein; InterPro IPR002529; KEGG: mci:Mesci_5979 fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like; SPTR: Fumarylacetoacetate (FAA) hydrolase; oxidoreductase domain-containing protein 18757 10860967 Runsl_5749 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004646510.1 17414 D 761193 CDS YP_004646511.1 338215019 10860968 complement(18912..19880) 1 NC_015695.1 PFAM: Fumarylacetoacetate (FAA) hydrolase family; InterPro IPR019587; KEGG: mel:Metbo_2377 polyketide cyclase/dehydrase; PFAM: Polyketide cyclase/dehydrase; SPTR: Putative uncharacterized protein; fumarylacetoacetate (FAA) hydrolase 19880 10860968 Runsl_5750 Runella slithyformis DSM 19594 fumarylacetoacetate (FAA) hydrolase YP_004646511.1 18912 R 761193 CDS YP_004646512.1 338215020 10860969 complement(19995..20519) 1 NC_015695.1 PFAM: Polyketide cyclase / dehydrase and lipid transport; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: dfe:Dfer_1119 putative transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: Putative transcriptional regulator, Crp/Fnr family; Polyketide cyclase/dehydrase 20519 10860969 Runsl_5751 Runella slithyformis DSM 19594 Polyketide cyclase/dehydrase YP_004646512.1 19995 R 761193 CDS YP_004646513.1 338215021 10860970 complement(20498..21082) 1 NC_015695.1 PFAM: Cyclic nucleotide-binding domain; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: ara:Arad_3007 sarcosine oxidase protein; PFAM: FAD dependent oxidoreductase; SPTR: Sarcosine oxidase protein; putative Crp/Fnr family transcriptional regulator 21082 10860970 Runsl_5752 Runella slithyformis DSM 19594 putative Crp/Fnr family transcriptional regulator YP_004646513.1 20498 R 761193 CDS YP_004646514.1 338215022 10860971 21205..22392 1 NC_015695.1 PFAM: FAD dependent oxidoreductase; COGs: COG2721 Altronate dehydratase; InterPro IPR013974:IPR007392; KEGG: sli:Slin_0416 altronate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase, C-terminal; SAF domain; PRIAM: Altronate dehydratase; SPTR: Altronate dehydratase; FAD dependent oxidoreductase 22392 10860971 Runsl_5753 Runella slithyformis DSM 19594 FAD dependent oxidoreductase YP_004646514.1 21205 D 761193 CDS YP_004646515.1 338215023 10860972 complement(22440..24092) 1 NC_015695.1 PFAM: SAF domain; D-galactarate dehydratase / Altronate hydrolase, C terminus; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: csa:Csal_1140 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; PRIAM: Aldehyde dehydrogenase (NADP(+)); SPTR: Aldehyde Dehydrogenase; Altronate dehydratase 24092 10860972 Runsl_5754 Runella slithyformis DSM 19594 Altronate dehydratase YP_004646515.1 22440 R 761193 CDS YP_004646516.1 338215024 10860973 complement(24188..25768) 1 NC_015695.1 PFAM: Aldehyde dehydrogenase family; COGs: COG3970 Fumarylacetoacetate (FAA) hydrolase family protein; InterPro IPR002529; KEGG: sli:Slin_1198 fumarylacetoacetate hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like; SPTR: Fumarylacetoacetate (FAA) hydrolase; aldehyde dehydrogenase (NADP(+)) 25768 10860973 Runsl_5755 Runella slithyformis DSM 19594 aldehyde dehydrogenase (NADP(+)) YP_004646516.1 24188 R 761193 CDS YP_004646517.1 338215025 10860974 complement(25771..26619) 1 NC_015695.1 PFAM: Fumarylacetoacetate (FAA) hydrolase family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: psn:Pedsa_1486 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; fumarylacetoacetate (FAA) hydrolase 26619 10860974 Runsl_5756 Runella slithyformis DSM 19594 fumarylacetoacetate (FAA) hydrolase YP_004646517.1 25771 R 761193 CDS YP_004646518.1 338215026 10860975 26680..27663 1 NC_015695.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG5527 Protein involved in initiation of plasmid replication; InterPro IPR000525; KEGG: sli:Slin_6661 initiator RepB protein; PFAM: Initiator Rep protein; SPTR: Initiator RepB protein; AraC family transcriptional regulator 27663 10860975 Runsl_5757 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004646518.1 26680 D 761193 CDS YP_004646519.1 338215027 10860976 complement(27698..28648) 1 NC_015695.1 PFAM: Initiator Replication protein; COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: sli:Slin_3649 cobyrinic acid ac-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Cobyrinic acid ac-diamide synthase; initiator RepB protein 28648 10860976 Runsl_5758 Runella slithyformis DSM 19594 initiator RepB protein YP_004646519.1 27698 R 761193 CDS YP_004646520.1 338215028 10860977 29760..30716 1 NC_015695.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; KEGG: sli:Slin_3648 hypothetical protein; SPTR: Putative uncharacterized protein; Cobyrinic acid ac-diamide synthase 30716 10860977 Runsl_5759 Runella slithyformis DSM 19594 Cobyrinic acid ac-diamide synthase YP_004646520.1 29760 D 761193 CDS YP_004646521.1 338215029 10860978 30726..31676 1 NC_015695.1 COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR003088; KEGG: sli:Slin_5485 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Protein up-regulated by thyroid hormone-putative PQQ-dependent glucose dehydrogenase; hypothetical protein 31676 10860978 Runsl_5760 Runella slithyformis DSM 19594 hypothetical protein YP_004646521.1 30726 D 761193 CDS YP_004646522.1 338215030 10860979 31813..33606 1 NC_015695.1 PFAM: Cytochrome c; Glucose / Sorbosone dehydrogenase; InterPro IPR007272; KEGG: lby:Lbys_0966 hypothetical protein; PFAM: Protein of unknown function DUF395, YeeE/YedE; SPTR: Putative uncharacterized protein; cytochrome c class I 33606 10860979 Runsl_5761 Runella slithyformis DSM 19594 cytochrome c class I YP_004646522.1 31813 D 761193 CDS YP_004646523.1 338215031 10860980 complement(33760..34263) 1 NC_015695.1 PFAM: YeeE/YedE family (DUF395); InterPro IPR007272; KEGG: sli:Slin_6934 protein of unknown function DUF395 YeeE/YedE; PFAM: Protein of unknown function DUF395, YeeE/YedE; SPTR: Putative uncharacterized protein; hypothetical protein 34263 10860980 Runsl_5762 Runella slithyformis DSM 19594 hypothetical protein YP_004646523.1 33760 R 761193 CDS YP_004646524.1 338215032 10860981 complement(34285..34860) 1 NC_015695.1 PFAM: YeeE/YedE family (DUF395); COGs: COG1295 membrane protein; InterPro IPR017039:IPR004664; KEGG: shg:Sph21_2110 ribonuclease BN; PFAM: Ribonuclease BN-related; SPTR: Putative uncharacterized protein; TIGRFAM: Ribonuclease BN; hypothetical protein 34860 10860981 Runsl_5763 Runella slithyformis DSM 19594 hypothetical protein YP_004646524.1 34285 R 761193 CDS YP_004646525.1 338215033 10860982 complement(35082..36050) 1 NC_015695.1 PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN); COGs: COG1546 Uncharacterized protein (competence- and mitomycin-induced); InterPro IPR008136; KEGG: dfe:Dfer_0362 CinA domain protein; PFAM: CinA, C-terminal; SPTR: CinA domain protein; TIGRFAM: CinA, C-terminal; ribonuclease BN 36050 10860982 Runsl_5764 Runella slithyformis DSM 19594 ribonuclease BN YP_004646525.1 35082 R 761193 CDS YP_004646526.1 338215034 10860983 complement(36084..36560) 1 NC_015695.1 PFAM: Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA C-terminal domain; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_0452 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; CinA domain-containing protein 36560 10860983 Runsl_5765 Runella slithyformis DSM 19594 CinA domain-containing protein YP_004646526.1 36084 R 761193 CDS YP_004646527.1 338215035 10860984 complement(36612..37460) 1 NC_015695.1 PFAM: short chain dehydrogenase; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; KEGG: sli:Slin_0497 short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-(acyl-carrier-protein) reductase 37460 10860984 Runsl_5766 Runella slithyformis DSM 19594 3-oxoacyl-(acyl-carrier-protein) reductase YP_004646527.1 36612 R 761193 CDS YP_004646528.1 338215036 10860985 complement(37513..38133) 1 NC_015695.1 Signal predicted by SignalP 3.0 HMM; IMG reference gene:2505789000_SP; hypothetical protein 38133 10860985 Runsl_5767 Runella slithyformis DSM 19594 hypothetical protein YP_004646528.1 37513 R 761193 CDS YP_004653593.1 338209546 10874206 123..1550 1 NC_015703.1 PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA; KEGG: sli:Slin_0002 hypothetical protein; SPTR: uncharacterized protein; chromosome replication initiator DnaA 1550 10874206 Runsl_0001 Runella slithyformis DSM 19594 chromosome replication initiator DnaA YP_004653593.1 123 D 761193 CDS YP_004653594.1 338209547 10868511 1570..2538 1 NC_015703.1 COGs: COG1652 Uncharacterized protein containing LysM domain; InterPro IPR002482:IPR007055:IPR018392; KEGG: lby:Lbys_1294 peptidoglycaN-binding lysin domain; PFAM: Peptidoglycan-binding lysin domain; Transport-associated; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Peptidoglycan-binding lysin domain; hypothetical protein 2538 10868511 Runsl_0002 Runella slithyformis DSM 19594 hypothetical protein YP_004653594.1 1570 D 761193 CDS YP_004653595.1 338209548 10868512 complement(2596..3054) 1 NC_015703.1 PFAM: phospholipid-binding domain; LysM domain; COGs: COG1052 Lactate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140; KEGG: fjo:Fjoh_1917 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; PRIAM: D-lactate dehydrogenase; SPTR: D-lactate dehydrogenase; peptidoglycan-binding lysin domain-containing protein 3054 10868512 Runsl_0003 Runella slithyformis DSM 19594 peptidoglycan-binding lysin domain-containing protein YP_004653595.1 2596 R 761193 CDS YP_004653596.1 338209549 10868513 3195..4187 1 NC_015703.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro IPR000182; KEGG: bha:BH1000 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; D-lactate dehydrogenase 4187 10868513 Runsl_0004 Runella slithyformis DSM 19594 D-lactate dehydrogenase YP_004653596.1 3195 D 761193 CDS YP_004653597.1 338209550 10868514 4184..4630 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG2367 Beta-lactamase class A; InterPro IPR001466; KEGG: sli:Slin_3212 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; N-acetyltransferase GCN5 4630 10868514 Runsl_0005 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004653597.1 4184 D 761193 CDS YP_004653598.1 338209551 10868515 4690..5634 1 NC_015703.1 KEGG: lby:Lbys_1886 periplasmic protein; SPTR: periplasmic protein; beta-lactamase 5634 10868515 Runsl_0006 Runella slithyformis DSM 19594 beta-lactamase YP_004653598.1 4690 D 761193 CDS YP_004653599.1 338209552 10868516 5823..7001 1 NC_015703.1 KEGG: cts:Ctha_0434 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 7001 10868516 Runsl_0007 Runella slithyformis DSM 19594 hypothetical protein YP_004653599.1 5823 D 761193 CDS YP_004653600.1 338209553 10868517 7047..7976 1 NC_015703.1 TIGRFAM: conserved hypothetical protein ( transposase or invertase); COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_6142 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; hypothetical protein 7976 10868517 Runsl_0008 Runella slithyformis DSM 19594 hypothetical protein YP_004653600.1 7047 D 761193 CDS YP_004653601.1 338209554 10868518 complement(7979..10531) 1 NC_015703.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593:IPR003439; KEGG: sli:Slin_0389 ABC transporter; PFAM: ABC transporter-like; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; TonB-dependent receptor 10531 10868518 Runsl_0009 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004653601.1 7979 R 761193 CDS YP_004653602.1 338209555 10868519 complement(10598..12421) 1 NC_015703.1 PFAM: ABC transporter; xenobiotic-transporting ATPase 12421 10868519 Runsl_0010 Runella slithyformis DSM 19594 xenobiotic-transporting ATPase YP_004653602.1 10598 R 761193 CDS YP_004653603.1 338209556 10868520 12631..12777 1 NC_015703.1 COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR013428:IPR013427:IPR003088; KEGG: sli:Slin_5811 dehydrogenase; PFAM: Cytochrome c, class I; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; haem-binding region; hypothetical protein 12777 10868520 Runsl_0011 Runella slithyformis DSM 19594 hypothetical protein YP_004653603.1 12631 D 761193 CDS YP_004653604.1 338209557 10868521 13345..16422 1 NC_015703.1 PFAM: Cytochrome c; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_3666 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; membrane-bound dehydrogenase domain-containing protein 16422 10868521 Runsl_0012 Runella slithyformis DSM 19594 membrane-bound dehydrogenase domain-containing protein YP_004653604.1 13345 D 761193 CDS YP_004653605.1 338209558 10868522 16765..17319 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; ECF subfamily RNA polymerase sigma-24 subunit 17319 10868522 Runsl_0013 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004653605.1 16765 D 761193 CDS YP_004653606.1 338209559 10868523 17297..18091 1 NC_015703.1 KEGG: cpi:Cpin_2142 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 18091 10868523 Runsl_0014 Runella slithyformis DSM 19594 hypothetical protein YP_004653606.1 17297 D 761193 CDS YP_004653607.1 338209560 10868524 18141..19247 1 NC_015703.1 COGs: COG1770 Protease II; InterPro IPR004106:IPR001375; KEGG: tde:TDE2140 protease II; PRIAM: Oligopeptidase B; SPTR: Oligopeptidase B; hypothetical protein 19247 10868524 Runsl_0015 Runella slithyformis DSM 19594 hypothetical protein YP_004653607.1 18141 D 761193 CDS YP_004653608.1 338209561 10868525 19402..21546 1 NC_015703.1 PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase; InterPro IPR005181; KEGG: fbc:FB2170_02125 sialic acid-specific 9-O-acetylesterase; PFAM: Protein of unknown function DUF303, acetylesterase PRIAM: Sialate O-acetylesterase; SPTR: Sialic acid-specific 9-O-acetylesterase; oligopeptidase B 21546 10868525 Runsl_0016 Runella slithyformis DSM 19594 oligopeptidase B YP_004653608.1 19402 D 761193 CDS YP_004653609.1 338209562 10868526 complement(22047..23450) 1 NC_015703.1 PFAM: Domain of unknown function (DUF303); COGs: COG3509 Poly(3-hydroxybutyrate) depolymerase; KEGG: sli:Slin_3891 poly(3-hydroxybutyrate) depolymerase-like protein; SPTR: Poly(3-hydroxybutyrate) depolymerase-like protein; sialate O-acetylesterase 23450 10868526 Runsl_0017 Runella slithyformis DSM 19594 sialate O-acetylesterase YP_004653609.1 22047 R 761193 CDS YP_004653610.1 338209563 10868527 complement(23667..24533) 1 NC_015703.1 PFAM: Phospholipase/Carboxylesterase; KEGG: psn:Pedsa_0710 hypothetical protein; SPTR: uncharacterized protein; poly(3-hydroxybutyrate) depolymerase-like protein 24533 10868527 Runsl_0018 Runella slithyformis DSM 19594 poly(3-hydroxybutyrate) depolymerase-like protein YP_004653610.1 23667 R 761193 CDS YP_004653611.1 338209564 10868528 complement(24565..25500) 1 NC_015703.1 COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006103; KEGG: gym:GYMC10_0218 glycoside hydrolase 2 sugar binding protein; PFAM: Glycoside hydrolase 2, carbohydrate-binding; Glycoside hydrolase 2, TIM barrel; SPTR: Glycoside hydrolase 2 sugar binding protein; hypothetical protein 25500 10868528 Runsl_0019 Runella slithyformis DSM 19594 hypothetical protein YP_004653611.1 24565 R 761193 CDS YP_004653612.1 338209565 10868529 complement(25604..28447) 1 NC_015703.1 PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; KEGG: dfe:Dfer_3650 hypothetical protein; SPTR: uncharacterized protein; glycoside hydrolase 28447 10868529 Runsl_0020 Runella slithyformis DSM 19594 glycoside hydrolase YP_004653612.1 25604 R 761193 CDS YP_004653613.1 338209566 10868530 28550..29530 1 NC_015703.1 PFAM: alpha/beta hydrolase fold; COGs: COG0221 Inorganic pyrophosphatase; InterPro IPR008162; KEGG: sli:Slin_2409 inorganic diphosphatase; PFAM: Inorganic pyrophosphatase; PRIAM: Inorganic diphosphatase; SPTR: Inorganic diphosphatase; hypothetical protein 29530 10868530 Runsl_0021 Runella slithyformis DSM 19594 hypothetical protein YP_004653613.1 28550 D 761193 CDS YP_004653614.1 338209567 10868531 complement(29725..30342) 1 NC_015703.1 PFAM: Inorganic pyrophosphatase; COGs: COG0025 NhaP-type Na+/H+ and K+/H+ antiporter; InterPro IPR004705:IPR006153; KEGG: cpi:Cpin_3978 Na+/H+ antiporter; PFAM: Cation/H+ exchanger; SPTR: Na+/H+ antiporter; TIGRFAM: Na+/H+ exchanger, yjcE-like, bacteria; inorganic diphosphatase 30342 10868531 Runsl_0022 Runella slithyformis DSM 19594 inorganic diphosphatase YP_004653614.1 29725 R 761193 CDS YP_004653615.1 338209568 10868532 30417..32042 1 NC_015703.1 PFAM: Sodium/hydrogen exchanger family; TIGRFAM: Na+/H+ antiporter, bacterial form; COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017; KEGG: dfe:Dfer_4016 protein of unknown function DUF224 cysteine-rich region domain protein; PFAM: Cysteine-rich region, CCG; SPTR: uncharacterized protein; Na+/H+ antiporter 32042 10868532 Runsl_0023 Runella slithyformis DSM 19594 Na+/H+ antiporter YP_004653615.1 30417 D 761193 CDS YP_004653616.1 338209569 10868533 32127..32918 1 NC_015703.1 PFAM: Cysteine-rich domain; KEGG: dfe:Dfer_4015 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 32918 10868533 Runsl_0024 Runella slithyformis DSM 19594 hypothetical protein YP_004653616.1 32127 D 761193 CDS YP_004653617.1 338209570 10868534 33095..33592 1 NC_015703.1 COGs: COG2989 conserved hypothetical protein; InterPro IPR005490; KEGG: dfe:Dfer_3137 ErfK/YbiS/YcfS/YnhG family protein; PFAM: YkuD domain; SPTR: ErfK/YbiS/YcfS/YnhG family protein; hypothetical protein 33592 10868534 Runsl_0025 Runella slithyformis DSM 19594 hypothetical protein YP_004653617.1 33095 D 761193 CDS YP_004653618.1 338209571 10868535 33833..34996 1 NC_015703.1 PFAM: L,D-transpeptidase catalytic domain; KEGG: dfe:Dfer_3138 hypothetical protein; SPTR: uncharacterized protein; ErfK/YbiS/YcfS/YnhG family protein 34996 10868535 Runsl_0026 Runella slithyformis DSM 19594 ErfK/YbiS/YcfS/YnhG family protein YP_004653618.1 33833 D 761193 CDS YP_004653619.1 338209572 10868536 complement(34993..35745) 1 NC_015703.1 PFAM: L,D-transpeptidase catalytic domain; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: dfe:Dfer_0453 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family; hypothetical protein 35745 10868536 Runsl_0027 Runella slithyformis DSM 19594 hypothetical protein YP_004653619.1 34993 R 761193 CDS YP_004653620.1 338209573 10868537 35940..36620 1 NC_015703.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: dfe:Dfer_0452 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SPTR: Histidine kinase; winged helix family two component transcriptional regulator 36620 10868537 Runsl_0028 Runella slithyformis DSM 19594 winged helix family two component transcriptional regulator YP_004653620.1 35940 D 761193 CDS YP_004653621.1 338209574 10868538 36621..37994 1 NC_015703.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; integral membrane sensor signal transduction histidine kinase 37994 10868538 Runsl_0029 Runella slithyformis DSM 19594 integral membrane sensor signal transduction histidine kinase YP_004653621.1 36621 D 761193 CDS YP_004653622.1 338209575 10868539 38164..38466 1 NC_015703.1 COGs: COG0560 Phosphoserine phosphatase; InterPro IPR001173:IPR013200; KEGG: cpi:Cpin_0395 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; HAD superfamily hydrolase-like, type 3; SPTR: Glycosyl transferase 2; hypothetical protein 38466 10868539 Runsl_0030 Runella slithyformis DSM 19594 hypothetical protein YP_004653622.1 38164 D 761193 CDS YP_004653623.1 338209576 10868540 38739..40115 1 NC_015703.1 PFAM: Glycosyl transferase 2; Phosphatase; TIGRFAM: Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; phosphoserine phosphatase SerB; COGs: COG0530 Ca2+/Na+ antiporter; InterPro IPR004837; KEGG: mrb:Mrub_2556 Na+/Ca+ antiporter, CaCA family; PFAM: Sodium/calcium exchanger membrane region; SPTR: Na+/Ca+ antiporter, CaCA family; family 2 glycosyl transferase 40115 10868540 Runsl_0031 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004653623.1 38739 D 761193 CDS YP_004653624.1 338209577 10868541 complement(40140..41075) 1 NC_015703.1 PFAM: Sodium/calcium exchanger protein; TIGRFAM: K+-dependent Na+/Ca+ exchanger related-protein; COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; InterPro IPR004680; KEGG: sli:Slin_1848 citrate transporter; PFAM: Divalent ion symporter; SPTR: Citrate transporter; sodium/calcium exchanger membrane region 41075 10868541 Runsl_0032 Runella slithyformis DSM 19594 sodium/calcium exchanger membrane region YP_004653624.1 40140 R 761193 CDS YP_004653625.1 338209578 10868542 41191..42456 1 NC_015703.1 PFAM: Citrate transporter; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: dfe:Dfer_5034 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; PRIAM: L-aminoadipate-semialdehyde dehydrogenase; SPTR: Aldehyde Dehydrogenase; citrate transporter 42456 10868542 Runsl_0033 Runella slithyformis DSM 19594 citrate transporter YP_004653625.1 41191 D 761193 CDS YP_004653626.1 338209579 10868543 42536..44062 1 NC_015703.1 PFAM: Aldehyde dehydrogenase; COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR011611:IPR005834; KEGG: dfe:Dfer_4313 PfkB domain protein; PFAM: Carbohydrate/purine kinase; Haloacid dehalogenase-like hydrolase; SPTR: PfkB domain protein; L-aminoadipate-semialdehyde dehydrogenase 44062 10868543 Runsl_0034 Runella slithyformis DSM 19594 L-aminoadipate-semialdehyde dehydrogenase YP_004653626.1 42536 D 761193 CDS YP_004653627.1 338209580 10868544 44137..46152 1 NC_015703.1 PFAM: pfkB family carbohydrate kinase; haloacid dehalogenase-like hydrolase; TIGRFAM: rfaE bifunctional protein, domain I; COGs: COG3537 alpha-1 2-mannosidase; InterPro IPR005887:IPR012939; KEGG: kol:Kole_0483 alpha-1,2-mannosidase; PFAM: Glycosyl hydrolase 92; SPTR: Alpha-1,2-mannosidase; TIGRFAM: Alpha-1,2-mannosidase; PfkB domain-containing protein 46152 10868544 Runsl_0035 Runella slithyformis DSM 19594 PfkB domain-containing protein YP_004653627.1 44137 D 761193 CDS YP_004653628.1 338209581 10868545 46152..48695 1 NC_015703.1 PFAM: Glycosyl hydrolase 92; TIGRFAM: alpha-1,2-mannosidase, COGs: COG3394 conserved hypothetical protein; InterPro IPR006879; KEGG: dfe:Dfer_4311 YdjC family protein; PFAM: YdjC-like protein; SPTR: YdjC family protein; alpha-1,2-mannosidase 48695 10868545 Runsl_0036 Runella slithyformis DSM 19594 alpha-1,2-mannosidase YP_004653628.1 46152 D 761193 CDS YP_004653629.1 338209582 10868546 48838..49899 1 NC_015703.1 PFAM: YdjC-like protein; COGs: COG4692 neuraminidase (sialidase); KEGG: shg:Sph21_1902 neuraminidase (sialidase)-like protein; SPTR: Neuraminidase (Sialidase)-like protein; hypothetical protein 49899 10868546 Runsl_0037 Runella slithyformis DSM 19594 hypothetical protein YP_004653629.1 48838 D 761193 CDS YP_004653630.1 338209583 10868547 50027..51208 1 NC_015703.1 PFAM: BNR/Asp-box repeat; KEGG: dfe:Dfer_3113 hypothetical protein; SPTR: uncharacterized protein; neuraminidase (sialidase)-like protein 51208 10868547 Runsl_0038 Runella slithyformis DSM 19594 neuraminidase (sialidase)-like protein YP_004653630.1 50027 D 761193 CDS YP_004653631.1 338209584 10868548 51530..52906 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 52906 10868548 Runsl_0039 Runella slithyformis DSM 19594 hypothetical protein YP_004653631.1 51530 D 761193 CDS YP_004653632.1 338209585 10868550 complement(53861..55168) 1 NC_015703.1 KEGG: dfe:Dfer_4310 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 55168 10868550 Runsl_0041 Runella slithyformis DSM 19594 hypothetical protein YP_004653632.1 53861 R 761193 CDS YP_004653633.1 338209586 10868551 55534..57729 1 NC_015703.1 KEGG: sli:Slin_6607 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 57729 10868551 Runsl_0042 Runella slithyformis DSM 19594 hypothetical protein YP_004653633.1 55534 D 761193 CDS YP_004653634.1 338209587 10868552 57784..60033 1 NC_015703.1 InterPro IPR011659; KEGG: dfe:Dfer_4309 hypothetical protein; PFAM: WD40-like Beta Propeller; SPTR: uncharacterized protein; hypothetical protein 60033 10868552 Runsl_0043 Runella slithyformis DSM 19594 hypothetical protein YP_004653634.1 57784 D 761193 CDS YP_004653635.1 338209588 10868553 60137..61585 1 NC_015703.1 PFAM: Protein of unknown function (DUF3748); KEGG: sli:Slin_0763 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 61585 10868553 Runsl_0044 Runella slithyformis DSM 19594 hypothetical protein YP_004653635.1 60137 D 761193 CDS YP_004653636.1 338209589 10868554 61652..62842 1 NC_015703.1 PFAM: Secretory lipase; InterPro IPR007139; KEGG: sli:Slin_5235 hypothetical protein; PFAM: Protein of unknown function DUF349; SPTR: uncharacterized protein; hypothetical protein 62842 10868554 Runsl_0045 Runella slithyformis DSM 19594 hypothetical protein YP_004653636.1 61652 D 761193 CDS YP_004653637.1 338209590 10868555 complement(62931..64199) 1 NC_015703.1 PFAM: Domain of Unknown Function (DUF349); COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR003439; KEGG: sli:Slin_5234 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; TIGRFAM: ATP-binding cassette protein, ChvD family; hypothetical protein 64199 10868555 Runsl_0046 Runella slithyformis DSM 19594 hypothetical protein YP_004653637.1 62931 R 761193 CDS YP_004653638.1 338209591 10868556 64354..66024 1 NC_015703.1 PFAM: ABC transporter; TIGRFAM: ATP-binding cassette protein, ChvD family; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_2955 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; ChvD family ATP-binding protein 66024 10868556 Runsl_0047 Runella slithyformis DSM 19594 ChvD family ATP-binding protein YP_004653638.1 64354 D 761193 CDS YP_004653639.1 338209592 10868557 complement(66057..67082) 1 NC_015703.1 PFAM: NAD dependent epimerase/dehydratase; KEGG: sli:Slin_0499 hypothetical protein; SPTR: uncharacterized protein; NAD-dependent epimerase/dehydratase 67082 10868557 Runsl_0048 Runella slithyformis DSM 19594 NAD-dependent epimerase/dehydratase YP_004653639.1 66057 R 761193 CDS YP_004653640.1 338209593 10868558 67357..68631 1 NC_015703.1 PFAM: OmpA family; COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR002054:IPR003141:IPR004013; KEGG: dfe:Dfer_5653 PHP domain protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal; DNA-directed DNA polymerase, family X; SPTR: PHP domain protein; hypothetical protein 68631 10868558 Runsl_0049 Runella slithyformis DSM 19594 hypothetical protein YP_004653640.1 67357 D 761193 CDS YP_004653641.1 338209594 10868559 complement(68722..70494) 1 NC_015703.1 PFAM: PHP domain; KEGG: dfe:Dfer_4377 hypothetical protein; SPTR: uncharacterized protein; PHP domain-containing protein 70494 10868559 Runsl_0050 Runella slithyformis DSM 19594 PHP domain-containing protein YP_004653641.1 68722 R 761193 CDS YP_004653642.1 338209595 10868560 70913..71863 1 NC_015703.1 KEGG: sli:Slin_2831 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 71863 10868560 Runsl_0051 Runella slithyformis DSM 19594 hypothetical protein YP_004653642.1 70913 D 761193 CDS YP_004653643.1 338209596 10868561 72040..72312 1 NC_015703.1 KEGG: cpi:Cpin_1115 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 72312 10868561 Runsl_0052 Runella slithyformis DSM 19594 hypothetical protein YP_004653643.1 72040 D 761193 CDS YP_004653644.1 338209597 10868562 72334..72606 1 NC_015703.1 COGs: COG0692 Uracil DNA glycosylase; HAMAP: Uracil-DNA glycosylase; InterPro IPR002043:IPR005122; KEGG: sli:Slin_0246 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase-like; SPTR: Uracil-DNA glycosylase; TIGRFAM: Uracil-DNA glycosylase; hypothetical protein 72606 10868562 Runsl_0053 Runella slithyformis DSM 19594 hypothetical protein YP_004653644.1 72334 D 761193 CDS YP_004653645.1 338209598 10868563 complement(72680..73345) 1 NC_015703.1 PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase; uracil-DNA glycosylase 73345 10868563 Runsl_0054 Runella slithyformis DSM 19594 uracil-DNA glycosylase YP_004653645.1 72680 R 761193 CDS YP_004653646.1 338209599 10868564 73353..73478 1 NC_015703.1 COGs: COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport; InterPro IPR007474; KEGG: sli:Slin_0247 ApaG domain protein; PFAM: ApaG; SPTR: ApaG domain protein; hypothetical protein 73478 10868564 Runsl_0055 Runella slithyformis DSM 19594 hypothetical protein YP_004653646.1 73353 D 761193 CDS YP_004653647.1 338209600 10868565 73514..73900 1 NC_015703.1 PFAM: Protein of unknown function (DUF525); COGs: COG4122 O-methyltransferase; KEGG: sli:Slin_0248 O-methyltransferase-like protein; SPTR: O-methyltransferase-like protein; ApaG domain-containing protein 73900 10868565 Runsl_0056 Runella slithyformis DSM 19594 ApaG domain-containing protein YP_004653647.1 73514 D 761193 CDS YP_004653648.1 338209601 10868566 74074..74862 1 NC_015703.1 PFAM: O-methyltransferase; COGs: COG1846 Transcriptional regulators; InterPro IPR000835; KEGG: sli:Slin_6318 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; O-methyltransferase-like protein 74862 10868566 Runsl_0057 Runella slithyformis DSM 19594 O-methyltransferase-like protein YP_004653648.1 74074 D 761193 CDS YP_004653649.1 338209602 10868567 74946..75386 1 NC_015703.1 PFAM: MarR family; COGs: COG0738 Fucose permease; InterPro IPR011701; KEGG: rxy:Rxyl_2098 major facilitator transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; MarR family transcriptional regulator 75386 10868567 Runsl_0058 Runella slithyformis DSM 19594 MarR family transcriptional regulator YP_004653649.1 74946 D 761193 CDS YP_004653650.1 338209603 10868568 complement(75395..76510) 1 NC_015703.1 PFAM: Major Facilitator Superfamily; COGs: COG0223 Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; InterPro IPR005794:IPR002376:IPR005793; KEGG: dfe:Dfer_4814 methionyl-tRNA formyltransferase; PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; PRIAM: Methionyl-tRNA formyltransferase; SPTR: Methionyl-tRNA formyltransferase; TIGRFAM: Methionyl-tRNA formyltransferase; major facilitator superfamily protein 76510 10868568 Runsl_0059 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004653650.1 75395 R 761193 CDS YP_004653651.1 338209604 10868569 complement(76538..77434) 1 NC_015703.1 PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase; COGs: COG0782 Transcription elongation factor; HAMAP: Transcription elongation factor greA; InterPro IPR006359:IPR001437; KEGG: dfe:Dfer_4815 transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic; SPTR: Transcription elongation factor greA; TIGRFAM: Prokaryotic transcription elongation factor GreA; methionyl-tRNA formyltransferase 77434 10868569 Runsl_0060 Runella slithyformis DSM 19594 methionyl-tRNA formyltransferase YP_004653651.1 76538 R 761193 CDS YP_004653652.1 338209605 10868570 77739..78212 1 NC_015703.1 PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreA; transcription elongation factor GreA 78212 10868570 Runsl_0061 Runella slithyformis DSM 19594 transcription elongation factor GreA YP_004653652.1 77739 D 761193 CDS YP_004653653.1 338209606 10868571 78624..78977 1 NC_015703.1 COGs: COG0012 GTPase probable translation factor; InterPro IPR004396:IPR002917:IPR013029; KEGG: chu:CHU_2219 GTP-dependent nucleic acid-binding protein EngD; PFAM: Protein of unknown function DUF933; GTP-binding protein, HSR1-related; SPTR: GTP-binding protein; TIGRFAM: Conserved hypothetical protein CHP00092; hypothetical protein 78977 10868571 Runsl_0062 Runella slithyformis DSM 19594 hypothetical protein YP_004653653.1 78624 D 761193 CDS YP_004653654.1 338209607 10868572 complement(79071..80168) 1 NC_015703.1 PFAM: GTPase of unknown function; Protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF; small GTP-binding protein domain; InterPro IPR006628; KEGG: sli:Slin_4280 hypothetical protein; SMART: PUR-alpha/beta/gamma, DNA/RNA-binding; SPTR: uncharacterized protein; GTP-binding protein YchF 80168 10868572 Runsl_0063 Runella slithyformis DSM 19594 GTP-binding protein YchF YP_004653654.1 79071 R 761193 CDS YP_004653655.1 338209608 10868573 complement(80395..80715) 1 NC_015703.1 PFAM: Protein of unknown function (DUF3276); COGs: COG0797 Lipoprotein; InterPro IPR012997:IPR005132; KEGG: dfe:Dfer_4774 rare lipoprotein A; PFAM: Rare lipoprotein A; SPTR: Rare lipoprotein A; TIGRFAM: Rare lipoprotein A, bacterial; PUR-alpha/beta/gamma DNA/RNA-binding protein 80715 10868573 Runsl_0064 Runella slithyformis DSM 19594 PUR-alpha/beta/gamma DNA/RNA-binding protein YP_004653655.1 80395 R 761193 CDS YP_004653656.1 338209609 10868574 80984..81430 1 NC_015703.1 PFAM: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; TIGRFAM: rare lipoprotein A; COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: sli:Slin_4278 hypothetical protein; PFAM: Protein of unknown function DUF58; SPTR: uncharacterized protein; rare lipoprotein A 81430 10868574 Runsl_0065 Runella slithyformis DSM 19594 rare lipoprotein A YP_004653656.1 80984 D 761193 CDS YP_004653657.1 338209610 10868575 81450..82364 1 NC_015703.1 PFAM: Protein of unknown function DUF58; KEGG: psn:Pedsa_2829 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 82364 10868575 Runsl_0066 Runella slithyformis DSM 19594 hypothetical protein YP_004653657.1 81450 D 761193 CDS YP_004653658.1 338209611 10868576 82416..83570 1 NC_015703.1 COGs: COG4299 conserved hypothetical protein; InterPro IPR019259; KEGG: dfe:Dfer_1233 hypothetical protein; PFAM: Protein of unknown function DUF2261, transmembrane; SPTR: uncharacterized protein; hypothetical protein 83570 10868576 Runsl_0067 Runella slithyformis DSM 19594 hypothetical protein YP_004653658.1 82416 D 761193 CDS YP_004653659.1 338209612 10868577 complement(83685..84881) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1624); COGs: COG0366 Glycosidase; InterPro IPR006589:IPR006047; KEGG: dfe:Dfer_2758 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; SPTR: Alpha amylase catalytic region; hypothetical protein 84881 10868577 Runsl_0068 Runella slithyformis DSM 19594 hypothetical protein YP_004653659.1 83685 R 761193 CDS YP_004653660.1 338209613 10868578 complement(85295..87115) 1 NC_015703.1 PFAM: Alpha amylase, catalytic domain; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dfe:Dfer_3949 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; alpha amylase 87115 10868578 Runsl_0069 Runella slithyformis DSM 19594 alpha amylase YP_004653660.1 85295 R 761193 CDS YP_004653661.1 338209614 10868579 87181..88305 1 NC_015703.1 PFAM: Glycosyl transferases group 1; COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; KEGG: sli:Slin_4943 cytochrome c oxidase subunit III; SPTR: Cytochrome c oxidase, subunit III; group 1 glycosyl transferase 88305 10868579 Runsl_0070 Runella slithyformis DSM 19594 group 1 glycosyl transferase YP_004653661.1 87181 D 761193 CDS YP_004653662.1 338209615 10868580 complement(88315..88929) 1 NC_015703.1 PFAM: Cytochrome c oxidase subunit III; COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; InterPro IPR004424:IPR006204:IPR013750; KEGG: sli:Slin_4944 4-diphosphocytidyl-2C-methyl-D-erythritolkinase; PFAM: GHMP kinase; GHMP kinase, C-terminal; SPTR: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; cytochrome c oxidase subunit III 88929 10868580 Runsl_0071 Runella slithyformis DSM 19594 cytochrome c oxidase subunit III YP_004653662.1 88315 R 761193 CDS YP_004653663.1 338209616 10868581 complement(88954..89763) 1 NC_015703.1 PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140:IPR002912; KEGG: dfe:Dfer_4690 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; Amino acid-binding ACT; SPTR: HAD-superfamily hydrolase, subfamily IB (PSPase-like); 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 89763 10868581 Runsl_0072 Runella slithyformis DSM 19594 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_004653663.1 88954 R 761193 CDS YP_004653664.1 338209617 10868582 complement(89853..91757) 1 NC_015703.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; ACT domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; InterPro IPR001701; KEGG: lby:Lbys_2672 glycoside hydrolase 9; PFAM: Glycoside hydrolase, family 9; SPTR: uncharacterized protein; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 91757 10868582 Runsl_0073 Runella slithyformis DSM 19594 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein YP_004653664.1 89853 R 761193 CDS YP_004653665.1 338209618 10868583 91937..93754 1 NC_015703.1 PFAM: Glycosyl hydrolase 9; N-terminal ig-like domain of cellulase; COGs: COG0420 DNA repair exonuclease; InterPro IPR004593:IPR004843; KEGG: dfe:Dfer_3506 nuclease SbcCD, D subunit; PFAM: Metallophosphoesterase; SPTR: Nuclease SbcCD, D subunit; TIGRFAM: Exonuclease SbcD; glycoside hydrolase 93754 10868583 Runsl_0074 Runella slithyformis DSM 19594 glycoside hydrolase YP_004653665.1 91937 D 761193 CDS YP_004653666.1 338209619 10868584 93854..95101 1 NC_015703.1 PFAM: Calcineurin-like phosphoesterase; Type 5 capsule protein repressor C terminal; TIGRFAM: exonuclease SbcD; COGs: COG0419 ATPase involved in DNA repair; InterPro IPR003395; KEGG: dfe:Dfer_3418 SMC domain protein; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: SMC domain protein; nuclease SbcCD subunit D 95101 10868584 Runsl_0075 Runella slithyformis DSM 19594 nuclease SbcCD subunit D YP_004653666.1 93854 D 761193 CDS YP_004653667.1 338209620 10868585 95098..98196 1 NC_015703.1 TIGRFAM: exonuclease SbcC; SMC domain-containing protein 98196 10868585 Runsl_0076 Runella slithyformis DSM 19594 SMC domain-containing protein YP_004653667.1 95098 D 761193 CDS YP_004653668.1 338209621 10868586 complement(98065..98331) 1 NC_015703.1 COGs: COG1434 conserved hypothetical protein; InterPro IPR003848; KEGG: dfe:Dfer_3103 protein of unknown function DUF218; PFAM: Protein of unknown function DUF218; SPTR: uncharacterized protein; hypothetical protein 98331 10868586 Runsl_0077 Runella slithyformis DSM 19594 hypothetical protein YP_004653668.1 98065 R 761193 CDS YP_004653669.1 338209622 10868587 complement(98300..99064) 1 NC_015703.1 PFAM: DUF218 domain; InterPro IPR000866; KEGG: sli:Slin_4277 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; hypothetical protein 99064 10868587 Runsl_0078 Runella slithyformis DSM 19594 hypothetical protein YP_004653669.1 98300 R 761193 CDS YP_004653670.1 338209623 10868588 99166..100596 1 NC_015703.1 PFAM: AhpC/TSA family; InterPro IPR000866; KEGG: sli:Slin_4277 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; alkyl hydroperoxide reductase 100596 10868588 Runsl_0079 Runella slithyformis DSM 19594 alkyl hydroperoxide reductase YP_004653670.1 99166 D 761193 CDS YP_004653671.1 338209624 10868589 100559..102043 1 NC_015703.1 PFAM: AhpC/TSA family; InterPro IPR003769; KEGG: sli:Slin_1599 ATP-dependent Clp protease adaptor protein ClpS; PFAM: Adaptor protein ClpS, core; SPTR: ATP-dependent Clp protease adaptor protein ClpS; alkyl hydroperoxide reductase 102043 10868589 Runsl_0080 Runella slithyformis DSM 19594 alkyl hydroperoxide reductase YP_004653671.1 100559 D 761193 CDS YP_004653672.1 338209625 10868590 complement(102158..102445) 1 NC_015703.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: sli:Slin_1598 Na+/solute symporter; PFAM: Sodium/solute symporter; SPTR: Na+/solute symporter; ATP-dependent Clp protease adaptor protein ClpS 102445 10868590 Runsl_0081 Runella slithyformis DSM 19594 ATP-dependent Clp protease adaptor protein ClpS YP_004653672.1 102158 R 761193 CDS YP_004653673.1 338209626 10868591 102545..104026 1 NC_015703.1 PFAM: Sodium:solute symporter family; KEGG: rbi:RB2501_03795 hypothetical protein; SPTR: uncharacterized protein; Na+/solute symporter 104026 10868591 Runsl_0082 Runella slithyformis DSM 19594 Na+/solute symporter YP_004653673.1 102545 D 761193 CDS YP_004653674.1 338209627 10868592 104130..105347 1 NC_015703.1 InterPro IPR012910; KEGG: sli:Slin_2829 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; hypothetical protein 105347 10868592 Runsl_0083 Runella slithyformis DSM 19594 hypothetical protein YP_004653674.1 104130 D 761193 CDS YP_004653675.1 338209628 10868593 105385..107805 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; COGs: COG1434 conserved hypothetical protein; InterPro IPR003848; KEGG: sli:Slin_3912 hypothetical protein; PFAM: Protein of unknown function DUF218; SPTR: uncharacterized protein; TonB-dependent receptor plug 107805 10868593 Runsl_0084 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004653675.1 105385 D 761193 CDS YP_004653676.1 338209629 10868594 107923..108567 1 NC_015703.1 PFAM: DUF218 domain; COGs: COG2388 acetyltransferase; KEGG: lby:Lbys_1223 gcn5-related N-acetyltransferase; SPTR: Acetyltransferase, GNAT family; hypothetical protein 108567 10868594 Runsl_0085 Runella slithyformis DSM 19594 hypothetical protein YP_004653676.1 107923 D 761193 CDS YP_004653677.1 338209630 10868595 108701..108985 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG1741 Pirin-related protein; InterPro IPR003829:IPR008778; KEGG: fjo:Fjoh_3490 pirin domain-containing protein; PFAM: Pirin, N-terminal; Pirin, C-terminal; SPTR: Pirin domain protein; N-acetyltransferase GCN5 108985 10868595 Runsl_0086 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004653677.1 108701 D 761193 CDS YP_004653678.1 338209631 10868596 109001..109897 1 NC_015703.1 PFAM: Pirin C-terminal cupin domain; Pirin; COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933:IPR002860:IPR000421; KEGG: lby:Lbys_2488 coagulation factor 5/8 type domain protein; PFAM: Coagulation factor 5/8 type, C-terminal; Glycoside hydrolase, family 29; BNR repeat; PRIAM: Alpha-L-fucosidase; SMART: Glycoside hydrolase, family 29; SPTR: Coagulation factor 5/8 type domain protein; pirin 109897 10868596 Runsl_0087 Runella slithyformis DSM 19594 pirin YP_004653678.1 109001 D 761193 CDS YP_004653679.1 338209632 10868597 110338..112758 1 NC_015703.1 PFAM: F5/8 type C domain; Alpha-L-fucosidase; KEGG: dfe:Dfer_3528 hypothetical protein; SPTR: uncharacterized protein; alpha-L-fucosidase 112758 10868597 Runsl_0088 Runella slithyformis DSM 19594 alpha-L-fucosidase YP_004653679.1 110338 D 761193 CDS YP_004653680.1 338209633 10868598 112985..114637 1 NC_015703.1 KEGG: dfe:Dfer_3528 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 114637 10868598 Runsl_0089 Runella slithyformis DSM 19594 hypothetical protein YP_004653680.1 112985 D 761193 CDS YP_004653681.1 338209634 10868599 114729..116390 1 NC_015703.1 KEGG: cmi:CMM_2296 hypothetical protein; SPTR: Predicted protein; hypothetical protein 116390 10868599 Runsl_0090 Runella slithyformis DSM 19594 hypothetical protein YP_004653681.1 114729 D 761193 CDS YP_004653682.1 338209635 10868600 116728..117582 1 NC_015703.1 InterPro IPR018580; KEGG: dfe:Dfer_3101 conserved hypothetical protein, membrane; PFAM: Protein of unknown function, membrane YfhO; SPTR: uncharacterized protein; hypothetical protein 117582 10868600 Runsl_0091 Runella slithyformis DSM 19594 hypothetical protein YP_004653682.1 116728 D 761193 CDS YP_004653683.1 338209636 10868601 complement(117888..120365) 1 NC_015703.1 PFAM: Bacterial membrane protein YfhO; KEGG: dfe:Dfer_5102 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 120365 10868601 Runsl_0092 Runella slithyformis DSM 19594 hypothetical protein YP_004653683.1 117888 R 761193 CDS YP_004653684.1 338209637 10868602 complement(120460..122184) 1 NC_015703.1 COGs: COG0205 6-phosphofructokinase; HAMAP: 6-phosphofructokinase; InterPro IPR012828:IPR000023; KEGG: sli:Slin_4275 6-phosphofructokinase; PFAM: Phosphofructokinase; PRIAM: 6-phosphofructokinase; SPTR: 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; hypothetical protein 122184 10868602 Runsl_0093 Runella slithyformis DSM 19594 hypothetical protein YP_004653684.1 120460 R 761193 CDS YP_004653685.1 338209638 10868603 122331..123308 1 NC_015703.1 PFAM: Phosphofructokinase; TIGRFAM: 6-phosphofructokinase; COGs: COG4772 Outer membrane receptor for Fe3+-dicitrate; InterPro IPR012910:IPR000531; KEGG: sli:Slin_6883 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; 6-phosphofructokinase 123308 10868603 Runsl_0094 Runella slithyformis DSM 19594 6-phosphofructokinase YP_004653685.1 122331 D 761193 CDS YP_004653686.1 338209639 10868604 123745..126174 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001:IPR001650:IPR007527:IPR000330; KEGG: sli:Slin_5625 SNF2-related protein; PFAM: SNF2-related; Zinc finger, SWIM-type; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: SNF2-related protein; TonB-dependent receptor 126174 10868604 Runsl_0095 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004653686.1 123745 D 761193 CDS YP_004653687.1 338209640 10868605 complement(126389..129934) 1 NC_015703.1 PFAM: SNF2 Helicase; Helicase conserved C-terminal domain; SNF2 family N-terminal domain; SWIM zinc finger; KEGG: pdi:BDI_2149 hypothetical protein; SPTR: uncharacterized protein; SNF2-like protein 129934 10868605 Runsl_0096 Runella slithyformis DSM 19594 SNF2-like protein YP_004653687.1 126389 R 761193 CDS YP_004653688.1 338209641 10868606 complement(129954..131549) 1 NC_015703.1 PFAM: Domain of unknown function DUF87; KEGG: bfr:BF1154 hypothetical protein; SPTR: DNA sulfur modification protein DndD; hypothetical protein 131549 10868606 Runsl_0097 Runella slithyformis DSM 19594 hypothetical protein YP_004653688.1 129954 R 761193 CDS YP_004653689.1 338209642 10868607 complement(131553..133553) 1 NC_015703.1 TIGRFAM: DNA sulfur modification protein DndD; KEGG: bfr:BF1155 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 133553 10868607 Runsl_0098 Runella slithyformis DSM 19594 hypothetical protein YP_004653689.1 131553 R 761193 CDS YP_004653690.1 338209643 10868608 complement(133561..133779) 1 NC_015703.1 manually curated; hypothetical protein 133779 10868608 Runsl_0099 Runella slithyformis DSM 19594 hypothetical protein YP_004653690.1 133561 R 761193 CDS YP_004653691.1 338209644 10868610 complement(133946..134236) 1 NC_015703.1 PFAM: Nucleotidyltransferase domain; InterPro IPR006935; KEGG: pdi:BDI_2135 hypothetical protein; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; SPTR: uncharacterized protein; DNA polymerase beta domain-containing protein 134236 10868610 Runsl_0101 Runella slithyformis DSM 19594 DNA polymerase beta domain-containing protein YP_004653691.1 133946 R 761193 CDS YP_004653692.1 338209645 10868611 complement(134285..136621) 1 NC_015703.1 PFAM: Type III restriction enzyme, res subunit; KEGG: chu:CHU_0701 hypothetical protein; SPTR: uncharacterized protein; type III restriction protein res subunit 136621 10868611 Runsl_0102 Runella slithyformis DSM 19594 type III restriction protein res subunit YP_004653692.1 134285 R 761193 CDS YP_004653693.1 338209646 10868612 complement(136717..137106) 1 NC_015703.1 COGs: COG2189 Adenine specific DNA methylase Mod; InterPro IPR002941; KEGG: bfr:BF1158 methyltransferase; PFAM: DNA methylase N-4/N-6; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Methyltransferase; hypothetical protein 137106 10868612 Runsl_0103 Runella slithyformis DSM 19594 hypothetical protein YP_004653693.1 136717 R 761193 CDS YP_004653694.1 338209647 10868613 complement(137276..139186) 1 NC_015703.1 PFAM: DNA methylase; InterPro IPR000595; KEGG: fjo:Fjoh_0475 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding protein; adenine-specific DNA methyltransferase 139186 10868613 Runsl_0104 Runella slithyformis DSM 19594 adenine-specific DNA methyltransferase YP_004653694.1 137276 R 761193 CDS YP_004653695.1 338209648 10868614 139352..139948 1 NC_015703.1 PFAM: Cyclic nucleotide-binding domain; InterPro IPR003961:IPR003343:IPR001547; KEGG: pjd:Pjdr2_5278 fibronectin type III domain protein; PFAM: Fibronectin, type III; Glycoside hydrolase, family 5; Bacterial Ig-like, group 2; SMART: Fibronectin, type III; Bacterial Ig-like, group 2; SPTR: Alpha amylase catalytic region; cyclic nucleotide-binding protein 139948 10868614 Runsl_0105 Runella slithyformis DSM 19594 cyclic nucleotide-binding protein YP_004653695.1 139352 D 761193 CDS YP_004653696.1 338209649 10868615 140052..143744 1 NC_015703.1 PFAM: Cellulase (glycosyl hydrolase 5); Fibronectin type III domain; KEGG: dfe:Dfer_4567 hypothetical protein; SPTR: uncharacterized protein; fibronectin type III 143744 10868615 Runsl_0106 Runella slithyformis DSM 19594 fibronectin type III YP_004653696.1 140052 D 761193 CDS YP_004653697.1 338209650 10868616 complement(143808..144368) 1 NC_015703.1 COGs: COG0523 GTPase (G3E family); InterPro IPR003495:IPR011629; KEGG: dfe:Dfer_2212 cobalamin synthesis protein P47K; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SPTR: Cobalamin synthesis protein P47K; hypothetical protein 144368 10868616 Runsl_0107 Runella slithyformis DSM 19594 hypothetical protein YP_004653697.1 143808 R 761193 CDS YP_004653698.1 338209651 10868617 complement(144506..145720) 1 NC_015703.1 PFAM: Cobalamin synthesis protein cobW C-terminal domain; CobW/HypB/UreG, nucleotide-binding domain; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: cpi:Cpin_3275 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: Transcriptional regulator, Crp/Fnr family protein; cobalamin synthesis protein P47K 145720 10868617 Runsl_0108 Runella slithyformis DSM 19594 cobalamin synthesis protein P47K YP_004653698.1 144506 R 761193 CDS YP_004653699.1 338209652 10868618 146064..146813 1 NC_015703.1 PFAM: Cyclic nucleotide-binding domain; KEGG: mtt:Ftrac_2707 cytochrome c class I; SPTR: Cytochrome c class I; Crp/Fnr family transcriptional regulator 146813 10868618 Runsl_0109 Runella slithyformis DSM 19594 Crp/Fnr family transcriptional regulator YP_004653699.1 146064 D 761193 CDS YP_004653700.1 338209653 10868619 147034..147501 1 NC_015703.1 PFAM: Cytochrome c; COGs: COG4263 Nitrous oxide reductase; InterPro IPR002429; KEGG: dfe:Dfer_0693 nitrous-oxide reductase; PFAM: Cytochrome c oxidase subunit II C-terminal; PRIAM: Nitrous-oxide reductase; SPTR: Nitrous-oxide reductase; cytochrome c class I 147501 10868619 Runsl_0110 Runella slithyformis DSM 19594 cytochrome c class I YP_004653700.1 147034 D 761193 CDS YP_004653701.1 338209654 10868620 147545..149602 1 NC_015703.1 PFAM: Cytochrome C oxidase subunit II, periplasmic domain; KEGG: dfe:Dfer_0694 hypothetical protein; SPTR: uncharacterized protein; nitrous-oxide reductase 149602 10868620 Runsl_0111 Runella slithyformis DSM 19594 nitrous-oxide reductase YP_004653701.1 147545 D 761193 CDS YP_004653702.1 338209655 10868621 149661..150695 1 NC_015703.1 PFAM: NosL; COGs: COG3420 Nitrous oxidase accessory protein; InterPro IPR006633:IPR006626:IPR007742; KEGG: dfe:Dfer_0695 periplasmic copper-binding; PFAM: Periplasmic copper-binding; SMART: Carbohydrate-binding/sugar hydrolysis domain; Parallel beta-helix repeat; SPTR: Periplasmic copper-binding; TIGRFAM: parallel beta-helix repeat; hypothetical protein 150695 10868621 Runsl_0112 Runella slithyformis DSM 19594 hypothetical protein YP_004653702.1 149661 D 761193 CDS YP_004653703.1 338209656 10868622 150722..152128 1 NC_015703.1 PFAM: Periplasmic copper-binding protein (NosD); TIGRFAM: parallel beta-helix repeat (two copies); COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_0696 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; parallel beta-helix repeat-containing protein 152128 10868622 Runsl_0113 Runella slithyformis DSM 19594 parallel beta-helix repeat-containing protein YP_004653703.1 150722 D 761193 CDS YP_004653704.1 338209657 10868623 152210..152962 1 NC_015703.1 PFAM: ABC transporter; KEGG: dfe:Dfer_0697 nitrous-oxide metabolic protein NosY; SPTR: Nitrous-oxide metabolic protein NosY; ABC transporter 152962 10868623 Runsl_0114 Runella slithyformis DSM 19594 ABC transporter YP_004653704.1 152210 D 761193 CDS YP_004653705.1 338209658 10868624 152959..153726 1 NC_015703.1 COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: gau:GAU_2687 hypothetical protein; PFAM: FAS1 domain; SMART: FAS1 domain; SPTR: uncharacterized protein; nitrous-oxide metabolic protein NosY 153726 10868624 Runsl_0115 Runella slithyformis DSM 19594 nitrous-oxide metabolic protein NosY YP_004653705.1 152959 D 761193 CDS YP_004653706.1 338209659 10868625 153811..154359 1 NC_015703.1 PFAM: Fasciclin domain; InterPro IPR013096; KEGG: fbc:FB2170_03785 hypothetical protein; PFAM: Cupin 2, conserved barrel; SPTR: uncharacterized protein; beta-Ig-H3/fasciclin 154359 10868625 Runsl_0116 Runella slithyformis DSM 19594 beta-Ig-H3/fasciclin YP_004653706.1 153811 D 761193 CDS YP_004653707.1 338209660 10868626 154371..154661 1 NC_015703.1 PFAM: Cupin domain; KEGG: dfe:Dfer_0096 hypothetical protein; SPTR: uncharacterized protein; cupin 154661 10868626 Runsl_0117 Runella slithyformis DSM 19594 cupin YP_004653707.1 154371 D 761193 CDS YP_004653708.1 338209661 10868627 154782..155171 1 NC_015703.1 KEGG: dfe:Dfer_5208 viral A-type inclusion protein; SPTR: Viral A-type inclusion protein; hypothetical protein 155171 10868627 Runsl_0118 Runella slithyformis DSM 19594 hypothetical protein YP_004653708.1 154782 D 761193 CDS YP_004653709.1 338209662 10868628 155255..155695 1 NC_015703.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_4534 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; viral A-type inclusion protein 155695 10868628 Runsl_0119 Runella slithyformis DSM 19594 viral A-type inclusion protein YP_004653709.1 155255 D 761193 CDS YP_004653710.1 338209663 10868629 155692..158058 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; KEGG: sli:Slin_4533 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor 158058 10868629 Runsl_0120 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004653710.1 155692 D 761193 CDS YP_004653711.1 338209664 10868630 158167..159366 1 NC_015703.1 PFAM: BNR/Asp-box repeat; KEGG: lby:Lbys_1453 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 159366 10868630 Runsl_0121 Runella slithyformis DSM 19594 hypothetical protein YP_004653711.1 158167 D 761193 CDS YP_004653712.1 338209665 10868631 159490..160038 1 NC_015703.1 PFAM: DinB family; KEGG: dfe:Dfer_3660 glycosyltransferase; SPTR: glycosyltransferase; hypothetical protein 160038 10868631 Runsl_0122 Runella slithyformis DSM 19594 hypothetical protein YP_004653712.1 159490 D 761193 CDS YP_004653713.1 338209666 10868632 160177..161283 1 NC_015703.1 PFAM: UDP-glucoronosyl and UDP-glucosyl transferase; TIGRFAM: conserved hypothetical protein; KEGG: dfe:Dfer_5123 hypothetical protein; SPTR: uncharacterized protein; glycosyltransferase 161283 10868632 Runsl_0123 Runella slithyformis DSM 19594 glycosyltransferase YP_004653713.1 160177 D 761193 CDS YP_004653714.1 338209667 10868633 complement(161392..161784) 1 NC_015703.1 COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: cfa:484681 sulfatase modifying factor 1; PFAM: Sulphatase-modifying factor; SPTR: Sulfatase-modifying factor 1; hypothetical protein 161784 10868633 Runsl_0124 Runella slithyformis DSM 19594 hypothetical protein YP_004653714.1 161392 R 761193 CDS YP_004653715.1 338209668 10868634 161803..162903 1 NC_015703.1 PFAM: Formylglycine-generating sulfatase enzyme; InterPro IPR019882; KEGG: bse:Bsel_0595 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03643; sulfatase-modifying factor protein 162903 10868634 Runsl_0125 Runella slithyformis DSM 19594 sulfatase-modifying factor protein YP_004653715.1 161803 D 761193 CDS YP_004653716.1 338209669 10868635 162968..163240 1 NC_015703.1 PFAM: Protein of unknown function (DUF2805); TIGRFAM: TIGR03643 family protein; InterPro IPR007362; KEGG: rmr:Rmar_1416 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 163240 10868635 Runsl_0126 Runella slithyformis DSM 19594 hypothetical protein YP_004653716.1 162968 D 761193 CDS YP_004653717.1 338209670 10868636 163240..163851 1 NC_015703.1 PFAM: Protein of unknown function (DUF429); InterPro IPR017136; KEGG: azl:AZL_a03980 hypothetical protein; PFAM: Uncharacterised conserved protein UCP037205; SPTR: uncharacterized protein; manually curated; hypothetical protein 163851 10868636 Runsl_0127 Runella slithyformis DSM 19594 hypothetical protein YP_004653717.1 163240 D 761193 CDS YP_004653718.1 338209671 10868637 163855..164007 1 NC_015703.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2256); COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692; KEGG: sli:Slin_4469 peptidase S45 penicillin amidase; PFAM: Peptidase S45, penicillin amidase; PRIAM: Glutaryl-7-aminocephalosporanic-acid acylase; SPTR: Peptidase S45 penicillin amidase; hypothetical protein 164007 10868637 Runsl_0128 Runella slithyformis DSM 19594 hypothetical protein YP_004653718.1 163855 D 761193 CDS YP_004653719.1 338209672 10868638 164265..166460 1 NC_015703.1 PFAM: Penicillin amidase; COGs: COG1196 Chromosome segregation ATPase; KEGG: dfe:Dfer_3800 hypothetical protein; SPTR: uncharacterized protein; glutaryl-7-aminocephalosporanic-acid acylase 166460 10868638 Runsl_0129 Runella slithyformis DSM 19594 glutaryl-7-aminocephalosporanic-acid acylase YP_004653719.1 164265 D 761193 CDS YP_004653720.1 338209673 10868639 166772..170197 1 NC_015703.1 KEGG: sli:Slin_2262 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 170197 10868639 Runsl_0130 Runella slithyformis DSM 19594 hypothetical protein YP_004653720.1 166772 D 761193 CDS YP_004653721.1 338209674 10868640 170312..171487 1 NC_015703.1 KEGG: sli:Slin_1854 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 171487 10868640 Runsl_0131 Runella slithyformis DSM 19594 hypothetical protein YP_004653721.1 170312 D 761193 CDS YP_004653722.1 338209675 10868641 171570..172094 1 NC_015703.1 PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family; KEGG: sli:Slin_3077 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 172094 10868641 Runsl_0132 Runella slithyformis DSM 19594 hypothetical protein YP_004653722.1 171570 D 761193 CDS YP_004653723.1 338209676 10868642 172142..172996 1 NC_015703.1 KEGG: dfe:Dfer_2687 hypothetical protein; hypothetical protein 172996 10868642 Runsl_0133 Runella slithyformis DSM 19594 hypothetical protein YP_004653723.1 172142 D 761193 CDS YP_004653724.1 338209677 10868643 complement(173032..173283) 1 NC_015703.1 COGs: COG0297 Glycogen synthase; InterPro IPR013534; KEGG: dfe:Dfer_4558 starch synthase catalytic domain protein; PFAM: Starch synthase catalytic region; PRIAM: Starch synthase; SPTR: Starch synthase catalytic domain protein; hypothetical protein 173283 10868643 Runsl_0134 Runella slithyformis DSM 19594 hypothetical protein YP_004653724.1 173032 R 761193 CDS YP_004653725.1 338209678 10868644 173437..174246 1 NC_015703.1 PFAM: Starch synthase catalytic domain; KEGG: fjo:Fjoh_1685 hypothetical protein; SPTR: Hypothetical lipoprotein; starch synthase 174246 10868644 Runsl_0135 Runella slithyformis DSM 19594 starch synthase YP_004653725.1 173437 D 761193 CDS YP_004653726.1 338209679 10868645 174230..175588 1 NC_015703.1 COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; HAMAP: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; InterPro IPR005855:IPR000583:IPR001347; KEGG: sli:Slin_4464 glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: Sugar isomerase (SIS); Glutamine amidotransferase, class-II; PRIAM: Glutamine--fructose-6-phosphate transaminase (isomerizing); SPTR: Glucosamine/fructose-6-phosphate aminotransferase, isomerizing; TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; hypothetical protein 175588 10868645 Runsl_0136 Runella slithyformis DSM 19594 hypothetical protein YP_004653726.1 174230 D 761193 CDS YP_004653727.1 338209680 10868646 175796..177634 1 NC_015703.1 PFAM: SIS domain; Glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing); InterPro IPR006311:IPR013097; KEGG: dfe:Dfer_1578 stress responsive alpha-beta barrel domain protein; PFAM: Stress responsive alpha-beta barrel; SPTR: Stress responsive alpha-beta barrel domain protein; glucosamine--fructose-6-phosphate aminotransferase 177634 10868646 Runsl_0137 Runella slithyformis DSM 19594 glucosamine--fructose-6-phosphate aminotransferase YP_004653727.1 175796 D 761193 CDS YP_004653728.1 338209681 10868647 177697..178101 1 NC_015703.1 PFAM: Stress responsive A/B Barrel Domain; COGs: COG2154 Pterin-4a-carbinolamine dehydratase; InterPro IPR001533; KEGG: sli:Slin_2232 transcriptional coactivator/pterin dehydratase; PFAM: Transcriptional coactivator/pterin dehydratase; SPTR: Transcriptional coactivator/pterin dehydratase; stress responsive alpha-beta barrel domain-containing protein 178101 10868647 Runsl_0138 Runella slithyformis DSM 19594 stress responsive alpha-beta barrel domain-containing protein YP_004653728.1 177697 D 761193 CDS YP_004653729.1 338209682 10868648 178195..178434 1 NC_015703.1 PFAM: Pterin 4 alpha carbinolamine dehydratase; transcriptional coactivator/pterin dehydratase 178434 10868648 Runsl_0139 Runella slithyformis DSM 19594 transcriptional coactivator/pterin dehydratase YP_004653729.1 178195 D 761193 CDS YP_004653730.1 338209683 10868649 complement(178538..178981) 1 NC_015703.1 COGs: COG0712 F0F1-type ATP synthase delta subunit (mitochondrial oligomycin sensitivity protein); HAMAP: ATPase, F1 complex, OSCP/delta subunit; InterPro IPR000711; KEGG: dfe:Dfer_5022 ATP synthase F1, delta subunit; PFAM: ATPase, F1 complex, OSCP/delta subunit; SPTR: ATP synthase subunit delta; TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; hypothetical protein 178981 10868649 Runsl_0140 Runella slithyformis DSM 19594 hypothetical protein YP_004653730.1 178538 R 761193 CDS YP_004653731.1 338209684 10868650 complement(179103..179639) 1 NC_015703.1 PFAM: ATP synthase delta (OSCP) subunit; TIGRFAM: ATP synthase, F1 delta subunit; COGs: COG0711 F0F1-type ATP synthase subunit b; HAMAP: ATP synthase subunit b; InterPro IPR005864:IPR002146; KEGG: sli:Slin_3214 ATP synthase F0 subunit beta; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; SPTR: ATP synthase subunit b; TIGRFAM: ATPase, F0 complex, subunit B, bacterial; ATP synthase subunit delta 179639 10868650 Runsl_0141 Runella slithyformis DSM 19594 ATP synthase subunit delta YP_004653731.1 179103 R 761193 CDS YP_004653732.1 338209685 10868651 complement(179704..180198) 1 NC_015703.1 PFAM: ATP synthase B/B' CF(0); TIGRFAM: ATP synthase, F0 subunit b; HAMAP: ATPase, F0 complex, subunit C; InterPro IPR005953:IPR000454:IPR002379; KEGG: lby:Lbys_3611 ATP synthase f0 subcomplex C subunit; PFAM: ATPase, F0/V0 complex, subunit C; SPTR: ATP synthase subunit c; TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; ATP synthase subunit b 180198 10868651 Runsl_0142 Runella slithyformis DSM 19594 ATP synthase subunit b YP_004653732.1 179704 R 761193 CDS YP_004653733.1 338209686 10868652 complement(180312..180575) 1 NC_015703.1 PFAM: ATP synthase subunit C; TIGRFAM: ATP synthase, F0 subunit c; COGs: COG0356 F0F1-type ATP synthase subunit a; HAMAP: ATP synthase subunit a; InterPro IPR000568; KEGG: sli:Slin_3216 ATP synthase F0 subunit alpha; PFAM: ATPase, F0 complex, subunit A; SPTR: ATP synthase subunit a; TIGRFAM: ATPase, F0 complex, subunit A; ATP synthase subunit c 180575 10868652 Runsl_0143 Runella slithyformis DSM 19594 ATP synthase subunit c YP_004653733.1 180312 R 761193 CDS YP_004653734.1 338209687 10868653 complement(180634..181731) 1 NC_015703.1 PFAM: ATP synthase A chain; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); KEGG: dfe:Dfer_5026 hypothetical protein; SPTR: uncharacterized protein; ATP synthase subunit a 181731 10868653 Runsl_0144 Runella slithyformis DSM 19594 ATP synthase subunit a YP_004653734.1 180634 R 761193 CDS YP_004653735.1 338209688 10868654 complement(181770..182135) 1 NC_015703.1 KEGG: sli:Slin_3218 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 182135 10868654 Runsl_0145 Runella slithyformis DSM 19594 hypothetical protein YP_004653735.1 181770 R 761193 CDS YP_004653736.1 338209689 10868655 complement(182226..182444) 1 NC_015703.1 InterPro IPR013099; KEGG: sli:Slin_0210 K channel inward rectifier conserved region 2 domain protein; PFAM: Ion transport 2; SPTR: K channel inward rectifier conserved region 2 domain protein; hypothetical protein 182444 10868655 Runsl_0146 Runella slithyformis DSM 19594 hypothetical protein YP_004653736.1 182226 R 761193 CDS YP_004653737.1 338209690 10868656 complement(182480..183466) 1 NC_015703.1 PFAM: Inward rectifier potassium channel; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_2236 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; ion transport 2 domain-containing protein 183466 10868656 Runsl_0147 Runella slithyformis DSM 19594 ion transport 2 domain-containing protein YP_004653737.1 182480 R 761193 CDS YP_004653738.1 338209691 10868657 183473..184585 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG0084 Mg-dependent DNase; InterPro IPR015991:IPR001130; KEGG: dfe:Dfer_5476 hydrolase, TatD family; PFAM: Deoxyribonuclease, TatD-related; SPTR: Hydrolase, TatD family; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; family 2 glycosyl transferase 184585 10868657 Runsl_0148 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004653738.1 183473 D 761193 CDS YP_004653739.1 338209692 10868658 184666..185430 1 NC_015703.1 PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family; COGs: COG0252 L-asparaginase/ Glu-tRNAGln amidotransferase subunit D; InterPro IPR006033:IPR006034; KEGG: dfe:Dfer_5475 L-asparaginase, type I; PFAM: Asparaginase/glutaminase; PRIAM: 1-alkyl-2-acetylglycerophosphocholine esterase; SPTR: L-asparaginase, type I; TIGRFAM: L-asparaginase, type I; TatD family hydrolase 185430 10868658 Runsl_0149 Runella slithyformis DSM 19594 TatD family hydrolase YP_004653739.1 184666 D 761193 CDS YP_004653740.1 338209693 10868659 185463..186533 1 NC_015703.1 PFAM: Asparaginase; TIGRFAM: L-asparaginases, type I; InterPro IPR019223; KEGG: cpi:Cpin_6391 signal peptide protein; PFAM: Protein of unknown function DUF2147; SPTR: signal peptide protein; type I L-asparaginase 186533 10868659 Runsl_0150 Runella slithyformis DSM 19594 type I L-asparaginase YP_004653740.1 185463 D 761193 CDS YP_004653741.1 338209694 10868660 186599..187033 1 NC_015703.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2147); InterPro IPR004993; KEGG: sli:Slin_1664 GH3 auxin-responsive promoter; PFAM: GH3 auxin-responsive promoter; SPTR: GH3 auxin-responsive promoter; hypothetical protein 187033 10868660 Runsl_0151 Runella slithyformis DSM 19594 hypothetical protein YP_004653741.1 186599 D 761193 CDS YP_004653742.1 338209695 10868661 complement(187192..188769) 1 NC_015703.1 PFAM: GH3 auxin-responsive promoter; COGs: COG0496 acid phosphatase; HAMAP: Multifunctional protein surE; InterPro IPR002828; KEGG: sli:Slin_1665 stationary-phase survival protein SurE; PFAM: Survival protein SurE-like phosphatase/nucleotidase; SPTR: 5'-nucleotidase surE; TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; GH3 auxin-responsive promoter 188769 10868661 Runsl_0152 Runella slithyformis DSM 19594 GH3 auxin-responsive promoter YP_004653742.1 187192 R 761193 CDS YP_004653743.1 338209696 10868662 complement(188880..189677) 1 NC_015703.1 PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE; COGs: COG2217 Cation transport ATPase; InterProIPR006403:IPR006416:IPR001757:IPR006121:IPR 008250:IPR005834; KEGG: phe:Phep_3058 copper-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Copper-translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; bifunctional 5'-3'-nucleotidase/exopolyphosphatase SurE 189677 10868662 Runsl_0153 Runella slithyformis DSM 19594 bifunctional 5'-3'-nucleotidase/exopolyphosphatase SurE YP_004653743.1 188880 R 761193 CDS YP_004653744.1 338209697 10868663 189953..192169 1 NC_015703.1 PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: zpr:ZPR_3369 hypothetical protein; SPTR: Protein containing heavy-metal-associated domain; heavy metal translocating P-type ATPase 192169 10868663 Runsl_0154 Runella slithyformis DSM 19594 heavy metal translocating P-type ATPase YP_004653744.1 189953 D 761193 CDS YP_004653745.1 338209698 10868664 192251..192460 1 NC_015703.1 PFAM: Heavy-metal-associated domain; manually curated; hypothetical protein 192460 10868664 Runsl_0155 Runella slithyformis DSM 19594 hypothetical protein YP_004653745.1 192251 D 761193 CDS YP_004653746.1 338209699 10868666 192964..194307 1 NC_015703.1 PFAM: BNR/Asp-box repeat; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sli:Slin_1432 sulfatase; PFAM: Sulfatase; SPTR: Sulfatase; glycosyl hydrolase 194307 10868666 Runsl_0157 Runella slithyformis DSM 19594 glycosyl hydrolase YP_004653746.1 192964 D 761193 CDS YP_004653747.1 338209700 10868667 194511..196025 1 NC_015703.1 PFAM: Sulfatase; COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated; sulfatase 196025 10868667 Runsl_0158 Runella slithyformis DSM 19594 sulfatase YP_004653747.1 194511 D 761193 CDS YP_004653748.1 338209701 10868668 complement(join(196550..197095,197097..197561)) 1 NC_015703.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; COGs: COG1054 sulfurtransferase; HAMAP: UPF0176 protein yceA; InterPro IPR001763; KEGG: dfe:Dfer_0476 hypothetical protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: UPF0176 protein Dfer_0476; transposase 197561 10868668 Runsl_0159 Runella slithyformis DSM 19594 transposase YP_004653748.1 196550 R 761193 CDS YP_004653749.1 338209702 10868669 complement(198023..198997) 1 NC_015703.1 PFAM: Rhodanese-like domain; COGs: COG1428 Deoxynucleoside kinase; InterPro IPR002624; KEGG: dfe:Dfer_0477 deoxynucleoside kinase; PFAM: Deoxynucleoside kinase; PRIAM: Deoxyadenosine kinase; SPTR: Deoxynucleoside kinase; hypothetical protein 198997 10868669 Runsl_0160 Runella slithyformis DSM 19594 hypothetical protein YP_004653749.1 198023 R 761193 CDS YP_004653750.1 338209703 10868670 199249..199863 1 NC_015703.1 PFAM: Deoxynucleoside kinase; COGs: COG0208 Ribonucleotide reductase beta subunit; InterPro IPR000358; KEGG: sli:Slin_5045 ribonucleoside-diphosphate reductase; PFAM: Ribonucleotide reductase; PRIAM: Ribonucleoside-diphosphate reductase; SPTR: Ribonucleoside-diphosphate reductase; deoxyadenosine kinase 199863 10868670 Runsl_0161 Runella slithyformis DSM 19594 deoxyadenosine kinase YP_004653750.1 199249 D 761193 CDS YP_004653751.1 338209704 10868671 complement(199977..200972) 1 NC_015703.1 PFAM: Ribonucleotide reductase, small chain; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: ppn:Palpr_1950 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; ribonucleoside-diphosphate reductase 200972 10868671 Runsl_0162 Runella slithyformis DSM 19594 ribonucleoside-diphosphate reductase YP_004653751.1 199977 R 761193 CDS YP_004653752.1 338209705 10868672 201209..201976 1 NC_015703.1 PFAM: Polysaccharide deacetylase; COGs: COG3616 amino acid aldolase or racemase; InterPro IPR001608; KEGG: dfe:Dfer_1026 alanine racemase domain protein; PFAM: Alanine racemase, N-terminal; SPTR: Alanine racemase domain protein; polysaccharide deacetylase 201976 10868672 Runsl_0163 Runella slithyformis DSM 19594 polysaccharide deacetylase YP_004653752.1 201209 D 761193 CDS YP_004653753.1 338209706 10868673 202028..203143 1 NC_015703.1 PFAM: Alanine racemase, N-terminal domain; COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: dfe:Dfer_4951 heat shock protein HSP20; PFAM: Heat shock protein Hsp20; SPTR: Heat shock protein Hsp20; alanine racemase 203143 10868673 Runsl_0164 Runella slithyformis DSM 19594 alanine racemase YP_004653753.1 202028 D 761193 CDS YP_004653754.1 338209707 10868674 complement(203230..203646) 1 NC_015703.1 PFAM: Hsp20/alpha crystallin family; KEGG: dfe:Dfer_4952 hypothetical protein; SPTR: uncharacterized protein; heat shock protein Hsp20 203646 10868674 Runsl_0165 Runella slithyformis DSM 19594 heat shock protein Hsp20 YP_004653754.1 203230 R 761193 CDS YP_004653755.1 338209708 10868675 complement(203892..204146) 1 NC_015703.1 hypothetical protein 204146 10868675 Runsl_0166 Runella slithyformis DSM 19594 hypothetical protein YP_004653755.1 203892 R 761193 CDS YP_004653756.1 338209709 10868676 204236..204880 1 NC_015703.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_4954 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein 204880 10868676 Runsl_0167 Runella slithyformis DSM 19594 hypothetical protein YP_004653756.1 204236 D 761193 CDS YP_004653757.1 338209710 10868677 complement(204859..205407) 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692; KEGG: mtt:Ftrac_0457 acyl-homoserine-lactone acylase; PFAM: Peptidase S45, penicillin amidase; SPTR: Acyl-homoserine-lactone acylase; ECF subfamily RNA polymerase sigma-24 subunit 205407 10868677 Runsl_0168 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004653757.1 204859 R 761193 CDS YP_004653758.1 338209711 10868678 complement(205571..207604) 1 NC_015703.1 PFAM: Penicillin amidase; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: sli:Slin_5859 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: AMP-dependent synthetase and ligase; peptidase S45 penicillin amidase 207604 10868678 Runsl_0169 Runella slithyformis DSM 19594 peptidase S45 penicillin amidase YP_004653758.1 205571 R 761193 CDS YP_004653759.1 338209712 10868679 207766..209478 1 NC_015703.1 PFAM: AMP-binding enzyme; COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: dal:Dalk_1296 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase domain protein; long-chain-fatty-acid--CoA ligase 209478 10868679 Runsl_0170 Runella slithyformis DSM 19594 long-chain-fatty-acid--CoA ligase YP_004653759.1 207766 D 761193 CDS YP_004653760.1 338209713 10868680 209545..211344 1 NC_015703.1 PFAM: Acyl-CoA dehydrogenase N terminal; Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; COGs: COG0686 Alanine dehydrogenase; InterPro IPR008141:IPR007886:IPR007698; KEGG: sli:Slin_2902 alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal; PRIAM: Alanine dehydrogenase; SPTR: Alanine dehydrogenase; TIGRFAM: Alanine dehydrogenase/pyridine nucleotide transhydrogenase; butyryl-CoA dehydrogenase 211344 10868680 Runsl_0171 Runella slithyformis DSM 19594 butyryl-CoA dehydrogenase YP_004653760.1 209545 D 761193 CDS YP_004653761.1 338209714 10868681 complement(211851..212981) 1 NC_015703.1 PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase; COGs: COG1522 Transcriptional regulators; InterPro IPR019888:IPR019887; KEGG: dfe:Dfer_0204 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type; SPTR: Transcriptional regulator, AsnC family; alanine dehydrogenase 212981 10868681 Runsl_0172 Runella slithyformis DSM 19594 alanine dehydrogenase YP_004653761.1 211851 R 761193 CDS YP_004653762.1 338209715 10868682 213223..213681 1 NC_015703.1 PFAM: MarR family; AsnC family; COGs: COG1165 2-succinyl-6-hydroxy-2 4-cyclohexadiene-1-carboxylate synthase; HAMAP: Menaquinone biosynthesis protein MenD; InterPro IPR004433:IPR012001; KEGG: sli:Slin_1992 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; PRIAM:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex ene-1-carboxylic-acidsynthase; SPTR:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexe ne-1-carboxylatesynthase; TIGRFAM: Menaquinone biosynthesis protein MenD; AsnC family transcriptional regulator 213681 10868682 Runsl_0173 Runella slithyformis DSM 19594 AsnC family transcriptional regulator YP_004653762.1 213223 D 761193 CDS YP_004653763.1 338209716 10868683 213764..215488 1 NC_015703.1 PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; TIGRFAM: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: aoe:Clos_1084 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 215488 10868683 Runsl_0174 Runella slithyformis DSM 19594 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase YP_004653763.1 213764 D 761193 CDS YP_004653764.1 338209717 10868684 complement(215485..216141) 1 NC_015703.1 PFAM: Methyltransferase domain; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: dfe:Dfer_2674 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; type 11 methyltransferase 216141 10868684 Runsl_0175 Runella slithyformis DSM 19594 type 11 methyltransferase YP_004653764.1 215485 R 761193 CDS YP_004653765.1 338209718 10868685 216393..217802 1 NC_015703.1 PFAM: OmpA family; KEGG: sli:Slin_1179 lipoprotein; SPTR: lipoprotein; OmpA/MotB domain-containing protein 217802 10868685 Runsl_0176 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004653765.1 216393 D 761193 CDS YP_004653766.1 338209719 10868686 217799..218683 1 NC_015703.1 InterPro IPR013217; KEGG: axy:AXYL_06309 methyltransferase domain-containing protein 11; PFAM: Methyltransferase type 12; SPTR: Methyltransferase domain protein 11; lipoprotein 218683 10868686 Runsl_0177 Runella slithyformis DSM 19594 lipoprotein YP_004653766.1 217799 D 761193 CDS YP_004653767.1 338209720 10868687 219037..219762 1 NC_015703.1 PFAM: Methyltransferase domain; COGs: COG5305 membrane protein; InterPro IPR003342; KEGG: sli:Slin_2543 hypothetical protein; PFAM: Glycosyl transferase, family 39; SPTR: Membrane protein-like protein; type 12 methyltransferase 219762 10868687 Runsl_0178 Runella slithyformis DSM 19594 type 12 methyltransferase YP_004653767.1 219037 D 761193 CDS YP_004653768.1 338209721 10868688 219801..221570 1 NC_015703.1 PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase; KEGG: dfe:Dfer_5126 hypothetical protein; SPTR: uncharacterized protein; glycosyl transferase family protein 221570 10868688 Runsl_0179 Runella slithyformis DSM 19594 glycosyl transferase family protein YP_004653768.1 219801 D 761193 CDS YP_004653769.1 338209722 10868689 complement(221731..222021) 1 NC_015703.1 COGs: COG1398 Fatty-acid desaturase; InterPro IPR005804; KEGG: chu:CHU_1136 fatty acid desaturase; PFAM: Fatty acid desaturase, type 1; SPTR: Fatty acid desaturase; hypothetical protein 222021 10868689 Runsl_0180 Runella slithyformis DSM 19594 hypothetical protein YP_004653769.1 221731 R 761193 CDS YP_004653770.1 338209723 10868690 222136..222888 1 NC_015703.1 PFAM: Fatty acid desaturase; COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; InterPro IPR000672:IPR020630:IPR020631; KEGG: dfe:Dfer_1212 methenyltetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; PRIAM: Methenyltetrahydrofolate cyclohydrolase; SPTR: Bifunctional protein FolD; fatty acid desaturase 222888 10868690 Runsl_0181 Runella slithyformis DSM 19594 fatty acid desaturase YP_004653770.1 222136 D 761193 CDS YP_004653771.1 338209724 10868691 complement(222983..223864) 1 NC_015703.1 PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; HAMAP: NAD-dependent deacetylase; InterPro IPR003000; KEGG: sli:Slin_2032 silent information regulator protein Sir2; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; SPTR: Silent information regulator protein Sir2; bifunctional protein folD 223864 10868691 Runsl_0182 Runella slithyformis DSM 19594 bifunctional protein folD YP_004653771.1 222983 R 761193 CDS YP_004653772.1 338209725 10868692 complement(224008..224712) 1 NC_015703.1 PFAM: Sir2 family; NAD-dependent deacetylase 224712 10868692 Runsl_0183 Runella slithyformis DSM 19594 NAD-dependent deacetylase YP_004653772.1 224008 R 761193 CDS YP_004653773.1 338209726 10868693 224792..225406 1 NC_015703.1 COGs: COG0137 Argininosuccinate synthase; InterPro IPR001518; KEGG: dfe:Dfer_4424 argininosuccinate synthase; PFAM: Argininosuccinate synthase; PRIAM: Argininosuccinate synthase; SPTR: Argininosuccinate synthase; TIGRFAM: Argininosuccinate synthase; hypothetical protein 225406 10868693 Runsl_0184 Runella slithyformis DSM 19594 hypothetical protein YP_004653773.1 224792 D 761193 CDS YP_004653774.1 338209727 10868694 complement(225767..226966) 1 NC_015703.1 PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase; KEGG: dfe:Dfer_4427 hypothetical protein; SPTR: uncharacterized protein; argininosuccinate synthase 226966 10868694 Runsl_0185 Runella slithyformis DSM 19594 argininosuccinate synthase YP_004653774.1 225767 R 761193 CDS YP_004653775.1 338209728 10868695 complement(227347..228057) 1 NC_015703.1 COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR006584:IPR003088:IPR005084; KEGG: sli:Slin_3440 PKD domain containing protein; PFAM: PKD; Cytochrome c, class I; Carbohydrate binding domain, family 6; SMART: PKD; Cellulose binding, type IV; SPTR: PKD domain containing protein; hypothetical protein 228057 10868695 Runsl_0186 Runella slithyformis DSM 19594 hypothetical protein YP_004653775.1 227347 R 761193 CDS YP_004653776.1 338209729 10868696 228572..231292 1 NC_015703.1 PFAM: Cytochrome c; Carbohydrate binding module (family 6); PKD domain; InterPro IPR000866; KEGG: dfe:Dfer_3156 hypothetical protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein; PKD domain-containing protein 231292 10868696 Runsl_0187 Runella slithyformis DSM 19594 PKD domain-containing protein YP_004653776.1 228572 D 761193 CDS YP_004653777.1 338209730 10868697 231593..233074 1 NC_015703.1 InterPro IPR016047; KEGG: sli:Slin_0667 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23; alkyl hydroperoxide reductase 233074 10868697 Runsl_0188 Runella slithyformis DSM 19594 alkyl hydroperoxide reductase YP_004653777.1 231593 D 761193 CDS YP_004653778.1 338209731 10868698 complement(233163..233909) 1 NC_015703.1 PFAM: Peptidase M23; COGs: COG3386 Gluconolactonase; InterPro IPR013658; KEGG: dfe:Dfer_4886 SMP-30/gluconolaconase/LRE domain protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; SPTR: SMP-30/Gluconolaconase/LRE domain protein; peptidase M23 233909 10868698 Runsl_0189 Runella slithyformis DSM 19594 peptidase M23 YP_004653778.1 233163 R 761193 CDS YP_004653779.1 338209732 10868699 complement(233917..234828) 1 NC_015703.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: sli:Slin_5957 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SMP-30/gluconolaconase/LRE-like region-containing protein 234828 10868699 Runsl_0190 Runella slithyformis DSM 19594 SMP-30/gluconolaconase/LRE-like region-containing protein YP_004653779.1 233917 R 761193 CDS YP_004653780.1 338209733 10868700 complement(234960..236078) 1 NC_015703.1 PFAM: AhpC/TSA family; KEGG: sli:Slin_0953 hypothetical protein; SPTR: uncharacterized protein; alkyl hydroperoxide reductase 236078 10868700 Runsl_0191 Runella slithyformis DSM 19594 alkyl hydroperoxide reductase YP_004653780.1 234960 R 761193 CDS YP_004653781.1 338209734 10868701 complement(236208..237215) 1 NC_015703.1 KEGG: dfe:Dfer_2825 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 237215 10868701 Runsl_0192 Runella slithyformis DSM 19594 hypothetical protein YP_004653781.1 236208 R 761193 CDS YP_004653782.1 338209735 10868702 complement(237227..237397) 1 NC_015703.1 COGs: COG1983 stress-responsive transcriptional regulator protein; InterPro IPR007168; KEGG: dfe:Dfer_2824 phage shock protein C, PspC; PFAM: PspC; SPTR: Phage shock protein C, PspC; hypothetical protein 237397 10868702 Runsl_0193 Runella slithyformis DSM 19594 hypothetical protein YP_004653782.1 237227 R 761193 CDS YP_004653783.1 338209736 10868703 complement(237496..238053) 1 NC_015703.1 PFAM: PspC domain; InterPro IPR000182; KEGG: maq:Maqu_2923 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; phage shock protein PspC 238053 10868703 Runsl_0194 Runella slithyformis DSM 19594 phage shock protein PspC YP_004653783.1 237496 R 761193 CDS YP_004653784.1 338209737 10868704 complement(238252..238722) 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG0498 Threonine synthase; InterPro IPR004450:IPR001926; KEGG: dfe:Dfer_3806 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Threonine synthase; SPTR: Threonine synthase; TIGRFAM: Threonine synthase; N-acetyltransferase GCN5 238722 10868704 Runsl_0195 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004653784.1 238252 R 761193 CDS YP_004653785.1 338209738 10868705 complement(238743..240044) 1 NC_015703.1 PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase; threonine synthase 240044 10868705 Runsl_0196 Runella slithyformis DSM 19594 threonine synthase YP_004653785.1 238743 R 761193 CDS YP_004653786.1 338209739 10868712 complement(245781..246500) 1 NC_015703.1 PFAM: GlcNAc-PI de-N-acetylase; TIGRFAM: bacillithiol biosynthesis deacetylase BshB1; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR002482:IPR016047:IPR018392; KEGG: sli:Slin_1779 peptidase M23; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Peptidase M23; LmbE family protein 246500 10868712 Runsl_0197 Runella slithyformis DSM 19594 LmbE family protein YP_004653786.1 245781 R 761193 CDS YP_004653787.1 338209740 10868713 complement(246507..247634) 1 NC_015703.1 PFAM: Peptidase M23; LysM domain; COGs: COG0492 Thioredoxin reductase; InterPro IPR005982:IPR013027; KEGG: dfe:Dfer_0086 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Thioredoxin-disulfide reductase; SPTR: Thioredoxin reductase; TIGRFAM: Thioredoxin reductase; peptidase M23 247634 10868713 Runsl_0198 Runella slithyformis DSM 19594 peptidase M23 YP_004653787.1 246507 R 761193 CDS YP_004653788.1 338209741 10868714 complement(247662..248603) 1 NC_015703.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR019734:IPR011659:IPR006665; KEGG: sli:Slin_1781 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SMART: Tetratricopeptide repeat; SPTR: OmpA/MotB domain protein; thioredoxin reductase 248603 10868714 Runsl_0199 Runella slithyformis DSM 19594 thioredoxin reductase YP_004653788.1 247662 R 761193 CDS YP_004653789.1 338209742 10868715 complement(248772..250778) 1 NC_015703.1 PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG0602 Organic radical activating protein; InterPro IPR007197; KEGG: lby:Lbys_1123 radical sam domain protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein; OmpA/MotB domain-containing protein 250778 10868715 Runsl_0200 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004653789.1 248772 R 761193 CDS YP_004653790.1 338209743 10868716 complement(250733..251335) 1 NC_015703.1 PFAM: Radical SAM superfamily; COGs: COG0176 Transaldolase; InterPro IPR000644:IPR001585; KEGG: sgg:SGGBAA2069_c21100 transaldolase; PFAM: Cystathionine beta-synthase, core; Transaldolase; SMART: Cystathionine beta-synthase, core; SPTR: Transaldolase; radical SAM protein 251335 10868716 Runsl_0201 Runella slithyformis DSM 19594 radical SAM protein YP_004653790.1 250733 R 761193 CDS YP_004653791.1 338209744 10868717 complement(251424..252431) 1 NC_015703.1 PFAM: CBS domain; Transaldolase; TIGRFAM: fructose-6-phosphate aldolase, TalC/MipB family; InterPro IPR012480; KEGG: bfs:BF0747 hypothetical protein; PFAM: Heparinase II/III-like; SPTR: uncharacterized protein; hypothetical protein 252431 10868717 Runsl_0202 Runella slithyformis DSM 19594 hypothetical protein YP_004653791.1 251424 R 761193 CDS YP_004653792.1 338209745 10868718 complement(252536..254509) 1 NC_015703.1 PFAM: Heparinase II/III-like protein; KEGG: dfe:Dfer_3951 hypothetical protein; SPTR: uncharacterized protein; heparinase II/III family protein 254509 10868718 Runsl_0203 Runella slithyformis DSM 19594 heparinase II/III family protein YP_004653792.1 252536 R 761193 CDS YP_004653793.1 338209746 10868719 complement(254573..255031) 1 NC_015703.1 InterPro IPR000923; KEGG: sli:Slin_1172 blue (type 1) copper domain protein; PFAM: Blue (type 1) copper domain; SPTR: Blue (Type 1) copper domain protein; hypothetical protein 255031 10868719 Runsl_0204 Runella slithyformis DSM 19594 hypothetical protein YP_004653793.1 254573 R 761193 CDS YP_004653794.1 338209747 10868720 255225..256310 1 NC_015703.1 PFAM: Copper binding proteins, plastocyanin/azurin family; KEGG: sli:Slin_1171 glucose/sorbosone dehydrogenase; SPTR: Glucose/sorbosone dehydrogenase-like protein; blue (type 1) copper domain-containing protein 256310 10868720 Runsl_0205 Runella slithyformis DSM 19594 blue (type 1) copper domain-containing protein YP_004653794.1 255225 D 761193 CDS YP_004653795.1 338209748 10868721 256358..257860 1 NC_015703.1 COGs: COG2273 Beta-glucanase/Beta-glucan synthetase; InterPro IPR000757; KEGG: sli:Slin_6434 glycoside hydrolase 16; PFAM: Glycoside hydrolase, family 16; PRIAM: Glucan endo-1,3-beta-D-glucosidase; SPTR: Glycoside hydrolase 16; glucose/sorbosone dehydrogenase 257860 10868721 Runsl_0206 Runella slithyformis DSM 19594 glucose/sorbosone dehydrogenase YP_004653795.1 256358 D 761193 CDS YP_004653796.1 338209749 10868722 complement(257861..258700) 1 NC_015703.1 PFAM: Glycosyl hydrolases family 16; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341:IPR013342; KEGG: sli:Slin_1934 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; PRIAM: Chloromuconate cycloisomerase; SPTR: Mandelate racemase/muconate lactonizing protein; glucan endo-1,3-beta-D-glucosidase 258700 10868722 Runsl_0207 Runella slithyformis DSM 19594 glucan endo-1,3-beta-D-glucosidase YP_004653796.1 257861 R 761193 CDS YP_004653797.1 338209750 10868723 complement(258906..259985) 1 NC_015703.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; COGs: COG3367 conserved hypothetical protein; InterPro IPR011669; KEGG: sli:Slin_1935 hypothetical protein; PFAM: Protein of unknown function DUF1611; SPTR: uncharacterized protein; chloromuconate cycloisomerase 259985 10868723 Runsl_0208 Runella slithyformis DSM 19594 chloromuconate cycloisomerase YP_004653797.1 258906 R 761193 CDS YP_004653798.1 338209751 10868724 complement(260033..261094) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1611); COGs: COG3653 N-acyl-D-aspartate/D-glutamate deacylase; InterPro IPR001466:IPR006680:IPR012855; KEGG: sli:Slin_1936 beta-lactamase; PFAM: Beta-lactamase-related; Amidohydrolase 1; D-aminoacylase, C-terminal; SPTR: Beta-lactamase; hypothetical protein 261094 10868724 Runsl_0209 Runella slithyformis DSM 19594 hypothetical protein YP_004653798.1 260033 R 761193 CDS YP_004653799.1 338209752 10868725 complement(261178..263709) 1 NC_015703.1 PFAM: D-aminoacylase, C-terminal region; Beta-lactamase; Amidohydrolase; COGs: COG1522 Transcriptional regulators; InterPro IPR019888:IPR000835:IPR019887; KEGG: hmg:100207563 hypothetical protein LOC100207563; PFAM: Transcription regulator, AsnC-type, C-terminal; HTH transcriptional regulator, MarR; SMART: Transcription regulator, AsnC-type; SPTR: AsnC family transcriptional regulator; beta-lactamase 263709 10868725 Runsl_0210 Runella slithyformis DSM 19594 beta-lactamase YP_004653799.1 261178 R 761193 CDS YP_004653800.1 338209753 10868726 263918..264373 1 NC_015703.1 PFAM: MarR family; AsnC family; COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: sli:Slin_1771 amidohydrolase; PFAM: Amidohydrolase 1; SPTR: Amidohydrolase; AsnC family transcriptional regulator 264373 10868726 Runsl_0211 Runella slithyformis DSM 19594 AsnC family transcriptional regulator YP_004653800.1 263918 D 761193 CDS YP_004653801.1 338209754 10868727 264496..267531 1 NC_015703.1 PFAM: Amidohydrolase; COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: sli:Slin_1772 amidohydrolase; PFAM: Amidohydrolase 1; SPTR: Amidohydrolase; amidohydrolase 267531 10868727 Runsl_0212 Runella slithyformis DSM 19594 amidohydrolase YP_004653801.1 264496 D 761193 CDS YP_004653802.1 338209755 10868728 267565..268965 1 NC_015703.1 PFAM: Amidohydrolase; KEGG: cph:Cpha266_1734 hypothetical protein; SPTR: uncharacterized protein; amidohydrolase 268965 10868728 Runsl_0213 Runella slithyformis DSM 19594 amidohydrolase YP_004653802.1 267565 D 761193 CDS YP_004653803.1 338209756 10868729 complement(269049..269777) 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 269777 10868729 Runsl_0214 Runella slithyformis DSM 19594 hypothetical protein YP_004653803.1 269049 R 761193 CDS YP_004653804.1 338209757 10868731 complement(271466..272350) 1 NC_015703.1 PFAM: NmrA-like family; InterPro IPR001647; KEGG: tbd:Tbd_0482 TetR family transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Possible Transcriptional Regulator, TetR family; NAD-dependent epimerase/dehydratase 272350 10868731 Runsl_0216 Runella slithyformis DSM 19594 NAD-dependent epimerase/dehydratase YP_004653804.1 271466 R 761193 CDS YP_004653805.1 338209758 10868732 complement(272430..273017) 1 NC_015703.1 PFAM: Bacterial regulatory proteins, tetR family; COGs: COG2308 conserved hypothetical protein; InterPro IPR007297:IPR007302; KEGG: sli:Slin_0231 hypothetical protein; PFAM: Protein of unknown function DUF404, bacteria N-terminal; Protein of unknown function DUF407; SPTR: uncharacterized protein; TetR family transcriptional regulator 273017 10868732 Runsl_0217 Runella slithyformis DSM 19594 TetR family transcriptional regulator YP_004653805.1 272430 R 761193 CDS YP_004653806.1 338209759 10868733 complement(273128..274558) 1 NC_015703.1 PFAM: Domain of unknown function (DUF407); Domain of unknown function (DUF404); KEGG: dfe:Dfer_4766 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 274558 10868733 Runsl_0218 Runella slithyformis DSM 19594 hypothetical protein YP_004653806.1 273128 R 761193 CDS YP_004653807.1 338209760 10868734 274793..276334 1 NC_015703.1 COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: cat:CA2559_05265 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR: Enoyl-CoA hydratase/isomerase; hypothetical protein 276334 10868734 Runsl_0219 Runella slithyformis DSM 19594 hypothetical protein YP_004653807.1 274793 D 761193 CDS YP_004653808.1 338209761 10868735 276342..277106 1 NC_015703.1 PFAM: Enoyl-CoA hydratase/isomerase; COGs: COG3021 conserved hypothetical protein; InterPro IPR005135; KEGG: cyp:PCC8801_0260 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; enoyl-CoA hydratase 277106 10868735 Runsl_0220 Runella slithyformis DSM 19594 enoyl-CoA hydratase YP_004653808.1 276342 D 761193 CDS YP_004653809.1 338209762 10868736 complement(277108..278052) 1 NC_015703.1 PFAM: Endonuclease/Exonuclease/phosphatase; COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; InterPro IPR003593:IPR003959; KEGG: sli:Slin_0420 ATPase AAA; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: AAA ATPase central domain protein; hypothetical protein 278052 10868736 Runsl_0221 Runella slithyformis DSM 19594 hypothetical protein YP_004653809.1 277108 R 761193 CDS YP_004653810.1 338209763 10868737 complement(278025..279287) 1 NC_015703.1 PFAM: MgsA AAA+ ATPase C terminal; ATPase associated with various cellular activities (AAA); COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_5734 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; ATPase AAA 279287 10868737 Runsl_0222 Runella slithyformis DSM 19594 ATPase AAA YP_004653810.1 278025 R 761193 CDS YP_004653811.1 338209764 10868738 complement(279416..279997) 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1001 Adenine deaminase; HAMAP: Adenine deaminase; InterPro IPR006679:IPR006680; KEGG: sli:Slin_0418 adenine deaminase; PFAM: Amidohydrolase 1; PRIAM: Adenine deaminase; SPTR: Adenine deaminase; TIGRFAM: Adenine deaminase; ECF subfamily RNA polymerase sigma-24 subunit 279997 10868738 Runsl_0223 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004653811.1 279416 R 761193 CDS YP_004653812.1 338209765 10868739 complement(280098..281741) 1 NC_015703.1 PFAM: Amidohydrolase; TIGRFAM: adenine deaminase; KEGG: dfe:Dfer_4816 hypothetical protein; SPTR: uncharacterized protein; adenine deaminase 281741 10868739 Runsl_0224 Runella slithyformis DSM 19594 adenine deaminase YP_004653812.1 280098 R 761193 CDS YP_004653813.1 338209766 10868740 281908..282243 1 NC_015703.1 KEGG: rbi:RB2501_01975 membrane associated hydrolase; SPTR: uncharacterized protein; hypothetical protein 282243 10868740 Runsl_0225 Runella slithyformis DSM 19594 hypothetical protein YP_004653813.1 281908 D 761193 CDS YP_004653814.1 338209767 10868741 282330..284564 1 NC_015703.1 Prodigal; manually curated; membrane associated hydrolase 284564 10868741 Runsl_0226 Runella slithyformis DSM 19594 membrane associated hydrolase YP_004653814.1 282330 D 761193 CDS YP_004653815.1 338209768 10868743 285015..286802 1 NC_015703.1 PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; GTP-binding protein LepA C-terminus; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: scl:sce0505 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; GTP-binding protein LepA 286802 10868743 Runsl_0228 Runella slithyformis DSM 19594 GTP-binding protein LepA YP_004653815.1 285015 D 761193 CDS YP_004653816.1 338209769 10868744 286815..287405 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR006257:IPR000089:IPR004167:IPR001078; KEGG: dfe:Dfer_5625 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; E3 binding; Biotin/lipoyl attachment; PRIAM: Dihydrolipoyllysine-residue acetyltransferase; SPTR: Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; TIGRFAM: Dihydrolipoamide acetyltransferase, long form; hypothetical protein 287405 10868744 Runsl_0229 Runella slithyformis DSM 19594 hypothetical protein YP_004653816.1 286815 D 761193 CDS YP_004653817.1 338209770 10868745 287523..289121 1 NC_015703.1 PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; COGs: COG5405 ATP-dependent protease HslVU (ClpYQ) peptidase subunit; HAMAP: ATP-dependent protease hslV; InterPro IPR001353; KEGG: sli:Slin_2720 20S proteasome A and subunit betas; PFAM: Proteasome, subunit alpha/beta; SPTR: ATP-dependent protease subunit HslV; TIGRFAM: ATP-dependent protease HslVU, peptidase subunit; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 289121 10868745 Runsl_0230 Runella slithyformis DSM 19594 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase YP_004653817.1 287523 D 761193 CDS YP_004653818.1 338209771 10868746 289392..289940 1 NC_015703.1 PFAM: Proteasome subunit; TIGRFAM: ATP-dependent protease HslVU, peptidase subunit; COGs: COG0193 Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; InterPro IPR001328; KEGG: dfe:Dfer_2675 peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; PRIAM: Aminoacyl-tRNA hydrolase; SPTR: Peptidyl-tRNA hydrolase; TIGRFAM: Peptidyl-tRNA hydrolase; ATP-dependent protease hslV 289940 10868746 Runsl_0231 Runella slithyformis DSM 19594 ATP-dependent protease hslV YP_004653818.1 289392 D 761193 CDS YP_004653819.1 338209772 10868747 289982..290542 1 NC_015703.1 PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; KEGG: sli:Slin_3162 hypothetical protein; SPTR: uncharacterized protein; peptidyl-tRNA hydrolase 290542 10868747 Runsl_0232 Runella slithyformis DSM 19594 peptidyl-tRNA hydrolase YP_004653819.1 289982 D 761193 CDS YP_004653820.1 338209773 10868748 290744..291247 1 NC_015703.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: swp:swp_1670 twin-arginine translocation pathway signal; PFAM: Oxidoreductase, N-terminal; PRIAM: Alpha-N-acetylgalactosaminidase; SPTR: Twin-arginine translocation pathway signal; hypothetical protein 291247 10868748 Runsl_0233 Runella slithyformis DSM 19594 hypothetical protein YP_004653820.1 290744 D 761193 CDS YP_004653821.1 338209774 10868749 complement(291363..292766) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; InterPro IPR008671; KEGG: cao:Celal_1771 lycopene beta and epsilon cyclase; PFAM: Lycopene beta/epsilon cyclase; SPTR: Lycopene beta and epsilon cyclase; alpha-N-acetylgalactosaminidase 292766 10868749 Runsl_0234 Runella slithyformis DSM 19594 alpha-N-acetylgalactosaminidase YP_004653821.1 291363 R 761193 CDS YP_004653822.1 338209775 10868750 293064..294296 1 NC_015703.1 PFAM: Lycopene cyclase; TIGRFAM: lycopene cyclase; KEGG: mtt:Ftrac_2394 beta-carotene 15,15'-monooxygenase, brp/blh family; SPTR: Beta-carotene 15,15'-monooxygenase, Brp/Blh family; TIGRFAM: beta-carotene 15,15'-monooxygenase, Brp/Blh family; Lycopene beta and epsilon cyclase 294296 10868750 Runsl_0235 Runella slithyformis DSM 19594 Lycopene beta and epsilon cyclase YP_004653822.1 293064 D 761193 CDS YP_004653823.1 338209776 10868751 294293..295153 1 NC_015703.1 TIGRFAM: beta-carotene 15,15'-monooxygenase, Brp/Blh family; COGs: COG0143 Methionyl-tRNA synthetase; HAMAP: Methionyl-tRNA synthetase; InterPro IPR002304:IPR004495:IPR015413:IPR002547; KEGG: dfe:Dfer_2956 methionyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding region; PRIAM: Methionine--tRNA ligase; SPTR: Methionyl-tRNA synthetase; TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; Brp/Blh family beta-carotene 15,15'-monooxygenase 295153 10868751 Runsl_0236 Runella slithyformis DSM 19594 Brp/Blh family beta-carotene 15,15'-monooxygenase YP_004653823.1 294293 D 761193 CDS YP_004653824.1 338209777 10868752 complement(295223..297292) 1 NC_015703.1 PFAM: Anticodon-binding domain; tRNA synthetases class I (M); tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; methionyl-tRNA synthetase; methionyl-tRNA synthetase 297292 10868752 Runsl_0237 Runella slithyformis DSM 19594 methionyl-tRNA synthetase YP_004653824.1 295223 R 761193 CDS YP_004653825.1 338209778 10868753 297573..297764 1 NC_015703.1 InterPro IPR001425; KEGG: sli:Slin_1643 rhodopsin; PFAM: Rhodopsin, bacterial; SPTR: Rhodopsin; hypothetical protein 297764 10868753 Runsl_0238 Runella slithyformis DSM 19594 hypothetical protein YP_004653825.1 297573 D 761193 CDS YP_004653826.1 338209779 10868754 298141..298905 1 NC_015703.1 PFAM: Bacteriorhodopsin-like protein; COGs: COG1106 ATPase; KEGG: sli:Slin_1472 ATPase; SPTR: ATPase-like protein; rhodopsin 298905 10868754 Runsl_0239 Runella slithyformis DSM 19594 rhodopsin YP_004653826.1 298141 D 761193 CDS YP_004653827.1 338209780 10868755 299077..300075 1 NC_015703.1 KEGG: sli:Slin_1473 hypothetical protein; SPTR: uncharacterized protein; ATPase 300075 10868755 Runsl_0240 Runella slithyformis DSM 19594 ATPase YP_004653827.1 299077 D 761193 CDS YP_004653828.1 338209781 10868756 300068..300571 1 NC_015703.1 COGs: COG0691 tmRNA-binding protein; HAMAP: SsrA-binding protein; InterPro IPR000037; KEGG: lby:Lbys_2545 SsrA-binding protein; PFAM: SsrA-binding protein; SPTR: SsrA-binding protein; TIGRFAM: SsrA-binding protein; hypothetical protein 300571 10868756 Runsl_0241 Runella slithyformis DSM 19594 hypothetical protein YP_004653828.1 300068 D 761193 CDS YP_004653829.1 338209782 10868757 complement(300779..301216) 1 NC_015703.1 PFAM: SmpB protein; TIGRFAM: SsrA-binding protein; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR001375; KEGG: sus:Acid_3737 peptidase S9 prolyl oligopeptidase; SPTR: Acylaminoacyl-peptidase; SsrA-binding protein 301216 10868757 Runsl_0242 Runella slithyformis DSM 19594 SsrA-binding protein YP_004653829.1 300779 R 761193 CDS YP_004653830.1 338209783 10868758 301444..304431 1 NC_015703.1 PFAM: Prolyl oligopeptidase; COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: sli:Slin_3590 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; peptidase S9 prolyl oligopeptidase 304431 10868758 Runsl_0243 Runella slithyformis DSM 19594 peptidase S9 prolyl oligopeptidase YP_004653830.1 301444 D 761193 CDS YP_004653831.1 338209784 10868759 complement(304499..305023) 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: sli:Slin_4876 ABC transporter; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; N-acetyltransferase GCN5 305023 10868759 Runsl_0244 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004653831.1 304499 R 761193 CDS YP_004653832.1 338209785 10868760 305180..306061 1 NC_015703.1 PFAM: ABC transporter; InterPro IPR014782; KEGG: sli:Slin_4874 hypothetical protein; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; SPTR: uncharacterized protein; phosphonate-transporting ATPase 306061 10868760 Runsl_0245 Runella slithyformis DSM 19594 phosphonate-transporting ATPase YP_004653832.1 305180 D 761193 CDS YP_004653833.1 338209786 10868761 306083..309748 1 NC_015703.1 PFAM: Peptidase M1; Prodigal; manually curated; peptidase M1 membrane alanine aminopeptidase 309748 10868761 Runsl_0246 Runella slithyformis DSM 19594 peptidase M1 membrane alanine aminopeptidase YP_004653833.1 306083 D 761193 CDS YP_004653834.1 338209787 10868763 311325..312251 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: sli:Slin_0240 radical SAM protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein; xylose isomerase domain-containing protein 312251 10868763 Runsl_0248 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004653834.1 311325 D 761193 CDS YP_004653835.1 338209788 10868764 312375..313397 1 NC_015703.1 PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: lby:Lbys_2061 short-chain dehydrogenase/reductase sdr; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; radical SAM protein 313397 10868764 Runsl_0249 Runella slithyformis DSM 19594 radical SAM protein YP_004653835.1 312375 D 761193 CDS YP_004653836.1 338209789 10868765 313629..314420 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG0738 Fucose permease; InterPro IPR005275:IPR011701; KEGG: sli:Slin_1494 L-fucose transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: L-fucose transporter; TIGRFAM: L-fucose permease; 3-oxoacyl-ACP reductase 314420 10868765 Runsl_0250 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004653836.1 313629 D 761193 CDS YP_004653837.1 338209790 10868766 314491..315708 1 NC_015703.1 PFAM: Major Facilitator Superfamily; TIGRFAM: L-fucose:H+ symporter permease; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: phe:Phep_0675 cellulase; PFAM: Polysaccharide deacetylase; SPTR: Cellulase; L-fucose transporter 315708 10868766 Runsl_0251 Runella slithyformis DSM 19594 L-fucose transporter YP_004653837.1 314491 D 761193 CDS YP_004653838.1 338209791 10868767 complement(315839..316597) 1 NC_015703.1 PFAM: Polysaccharide deacetylase; COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001:IPR001650:IPR000330; KEGG: dfe:Dfer_0265 non-specific serine/threonine protein kinase; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Snf2 family protein; polysaccharide deacetylase 316597 10868767 Runsl_0252 Runella slithyformis DSM 19594 polysaccharide deacetylase YP_004653838.1 315839 R 761193 CDS YP_004653839.1 338209792 10868768 complement(316649..320014) 1 NC_015703.1 PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain; COGs: COG2114 Adenylate cyclase 3 (some protein contain HAMP domain); InterPro IPR001789:IPR001054; KEGG: dfe:Dfer_1110 adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; Adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: Adenylate/guanylate cyclase; SNF2-like protein 320014 10868768 Runsl_0253 Runella slithyformis DSM 19594 SNF2-like protein YP_004653839.1 316649 R 761193 CDS YP_004653840.1 338209793 10868769 complement(320159..321193) 1 NC_015703.1 PFAM: Adenylate and Guanylate cyclase catalytic domain; Response regulator receiver domain; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: dfe:Dfer_1111 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; guanylate cyclase 321193 10868769 Runsl_0254 Runella slithyformis DSM 19594 guanylate cyclase YP_004653840.1 320159 R 761193 CDS YP_004653841.1 338209794 10868770 complement(321205..321579) 1 NC_015703.1 PFAM: Response regulator receiver domain; COGs: COG1979 Uncharacterized oxidoreductase Fe-dependent alcohol dehydrogenase; InterPro IPR001670; KEGG: ava:Ava_2489 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type; PRIAM: Alcohol dehydrogenase (NADP(+)); SPTR: Iron-containing alcohol dehydrogenase; response regulator receiver protein 321579 10868770 Runsl_0255 Runella slithyformis DSM 19594 response regulator receiver protein YP_004653841.1 321205 R 761193 CDS YP_004653842.1 338209795 10868771 321698..322852 1 NC_015703.1 PFAM: Iron-containing alcohol dehydrogenase; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: mbn:Mboo_0013 HxlR family transcriptional regulator; PFAM: Helix-turn-helix, HxlR type; SPTR: Transcriptional regulator, MarR family; alcohol dehydrogenase 322852 10868771 Runsl_0256 Runella slithyformis DSM 19594 alcohol dehydrogenase YP_004653842.1 321698 D 761193 CDS YP_004653843.1 338209796 10868772 complement(323116..323460) 1 NC_015703.1 PFAM: HxlR-like helix-turn-helix; COGs: COG1846 Transcriptional regulators; InterPro IPR000835; KEGG: bvu:BVU_0014 transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator; HxlR family transcriptional regulator 323460 10868772 Runsl_0257 Runella slithyformis DSM 19594 HxlR family transcriptional regulator YP_004653843.1 323116 R 761193 CDS YP_004653844.1 338209797 10868773 323681..324115 1 NC_015703.1 PFAM: MarR family; MarR family transcriptional regulator 324115 10868773 Runsl_0258 Runella slithyformis DSM 19594 MarR family transcriptional regulator YP_004653844.1 323681 D 761193 CDS YP_004653845.1 338209798 10868774 324185..324331 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 324331 10868774 Runsl_0259 Runella slithyformis DSM 19594 hypothetical protein YP_004653845.1 324185 D 761193 CDS YP_004653846.1 338209799 10868776 324694..325401 1 NC_015703.1 PFAM: Pirin; COGs: COG0693 intracellular protease/amidase; InterPro IPR002818; KEGG: ana:alr8073 hypothetical protein; PFAM: ThiJ/PfpI; SPTR: ThiJ/PfpI family protein; pirin 325401 10868776 Runsl_0261 Runella slithyformis DSM 19594 pirin YP_004653846.1 324694 D 761193 CDS YP_004653847.1 338209800 10868777 325560..326318 1 NC_015703.1 PFAM: DJ-1/PfpI family; KEGG: mtt:Ftrac_3234 hypothetical protein; SPTR: uncharacterized protein; ThiJ/PfpI domain-containing protein 326318 10868777 Runsl_0262 Runella slithyformis DSM 19594 ThiJ/PfpI domain-containing protein YP_004653847.1 325560 D 761193 CDS YP_004653848.1 338209801 10868778 complement(326427..326804) 1 NC_015703.1 COGs: COG3324 protein related to lactoylglutathione lyase; KEGG: acp:A2cp1_4043 glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; hypothetical protein 326804 10868778 Runsl_0263 Runella slithyformis DSM 19594 hypothetical protein YP_004653848.1 326427 R 761193 CDS YP_004653849.1 338209802 10868779 327081..327455 1 NC_015703.1 KEGG: dfe:Dfer_0266 hypothetical protein; SPTR: uncharacterized protein; glyoxalase/bleomycin resistance protein/dioxygenase 327455 10868779 Runsl_0264 Runella slithyformis DSM 19594 glyoxalase/bleomycin resistance protein/dioxygenase YP_004653849.1 327081 D 761193 CDS YP_004653850.1 338209803 10868780 327494..328228 1 NC_015703.1 PFAM: Protein of unknown function, DUF481; COGs: COG3781 membrane protein; InterPro IPR007913; KEGG: chu:CHU_1817 hypothetical protein; SPTR: Conserved effector locus protein; hypothetical protein 328228 10868780 Runsl_0265 Runella slithyformis DSM 19594 hypothetical protein YP_004653850.1 327494 D 761193 CDS YP_004653851.1 338209804 10868781 328235..329170 1 NC_015703.1 PFAM: Bestrophin; COGs: COG3548 integral membrane protein; InterPro IPR010617; KEGG: psn:Pedsa_2090 protein of unknown function DUF1211; PFAM: Protein of unknown function DUF1211; SPTR: uncharacterized protein; hypothetical protein 329170 10868781 Runsl_0266 Runella slithyformis DSM 19594 hypothetical protein YP_004653851.1 328235 D 761193 CDS YP_004653852.1 338209805 10868782 329172..329747 1 NC_015703.1 PFAM: Protein of unknown function (DUF1211); COGs: COG2085 dinucleotide-binding protein; InterPro IPR004455; KEGG: sus:Acid_3142 NADP oxidoreductase, coenzyme F420-dependent; PFAM: NADP oxidoreductase, coenzyme F420-dependent; SPTR: NADP oxidoreductase coenzyme f420-dependent superfamily; hypothetical protein 329747 10868782 Runsl_0267 Runella slithyformis DSM 19594 hypothetical protein YP_004653852.1 329172 D 761193 CDS YP_004653853.1 338209806 10868783 329776..330390 1 NC_015703.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: sli:Slin_5025 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; coenzyme F420-dependent NADP oxidoreductase 330390 10868783 Runsl_0268 Runella slithyformis DSM 19594 coenzyme F420-dependent NADP oxidoreductase YP_004653853.1 329776 D 761193 CDS YP_004653854.1 338209807 10868784 complement(330394..333507) 1 NC_015703.1 PFAM: Cyclic nucleotide-binding domain; COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR003661:IPR003594; KEGG: dfe:Dfer_1112 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase; Crp/Fnr family transcriptional regulator 333507 10868784 Runsl_0269 Runella slithyformis DSM 19594 Crp/Fnr family transcriptional regulator YP_004653854.1 330394 R 761193 CDS YP_004653855.1 338209808 10868785 333616..334995 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR019734:IPR003661:IPR003594:IPR001440; KEGG: sli:Slin_3715 histidine kinase; PFAM: ATP-binding region, ATPase-like; Tetratricopeptide TPR-1; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Tetratricopeptide repeat; SPTR: Histidine kinase; integral membrane sensor signal transduction histidine kinase 334995 10868785 Runsl_0270 Runella slithyformis DSM 19594 integral membrane sensor signal transduction histidine kinase YP_004653855.1 333616 D 761193 CDS YP_004653856.1 338209809 10868786 335011..337035 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR003661:IPR003594; KEGG: sli:Slin_2864 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase; ATP-binding protein 337035 10868786 Runsl_0271 Runella slithyformis DSM 19594 ATP-binding protein YP_004653856.1 335011 D 761193 CDS YP_004653857.1 338209810 10868787 337162..339342 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR003661:IPR003594; KEGG: sli:Slin_2864 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase; integral membrane sensor signal transduction histidine kinase 339342 10868787 Runsl_0272 Runella slithyformis DSM 19594 integral membrane sensor signal transduction histidine kinase YP_004653857.1 337162 D 761193 CDS YP_004653858.1 338209811 10868788 339370..341595 1 NC_015703.1 PFAM: 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; KEGG: gfo:GFO_3525 hypothetical protein; SPTR: uncharacterized protein; integral membrane sensor signal transduction histidine kinase 341595 10868788 Runsl_0273 Runella slithyformis DSM 19594 integral membrane sensor signal transduction histidine kinase YP_004653858.1 339370 D 761193 CDS YP_004653859.1 338209812 10868789 341656..342720 1 NC_015703.1 Prodigal; This gene is disrupted by complex chromosomal rearrangement; manually curated; hypothetical protein 342720 10868789 Runsl_0274 Runella slithyformis DSM 19594 hypothetical protein YP_004653859.1 341656 D 761193 CDS YP_004653860.1 338209813 10868790 complement(343330..343491) 1 NC_015703.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR001375; KEGG: sli:Slin_5023 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein; hypothetical protein 343491 10868790 Runsl_0276 Runella slithyformis DSM 19594 hypothetical protein YP_004653860.1 343330 R 761193 CDS YP_004653861.1 338209814 10868791 343549..344583 1 NC_015703.1 PFAM: Prolyl oligopeptidase; COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR000524:IPR004839; KEGG: dfe:Dfer_1191 transcriptional regulator, GntR family with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/II; SMART: HTH transcriptional regulator, GntR; SPTR: Transcriptional regulator, GntR family with aminotransferase domain; peptidase S9 prolyl oligopeptidase active site domain-containing protein 344583 10868791 Runsl_0277 Runella slithyformis DSM 19594 peptidase S9 prolyl oligopeptidase active site domain-containing protein YP_004653861.1 343549 D 761193 CDS YP_004653862.1 338209815 10868792 complement(345629..347095) 1 NC_015703.1 PFAM: Aminotransferase class I and II; Bacterial regulatory proteins, gntR family; COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR010168:IPR002933:IPR011650; KEGG: rbi:RB2501_12622 hypothetical protein; PFAM: Peptidase M20, dimerisation; Peptidase M20; SPTR: uncharacterized protein; TIGRFAM: Peptidase M20D, amidohydrolase; GntR family transcriptional regulator 347095 10868792 Runsl_0278 Runella slithyformis DSM 19594 GntR family transcriptional regulator YP_004653862.1 345629 R 761193 CDS YP_004653863.1 338209816 10868793 complement(347279..348712) 1 NC_015703.1 PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase; COGs: COG3467 flavin-nucleotide-binding protein; KEGG: dfe:Dfer_1192 hypothetical protein; SPTR: uncharacterized protein; amidohydrolase 348712 10868793 Runsl_0279 Runella slithyformis DSM 19594 amidohydrolase YP_004653863.1 347279 R 761193 CDS YP_004653864.1 338209817 10868794 348825..349460 1 NC_015703.1 KEGG: dfe:Dfer_0026 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 349460 10868794 Runsl_0280 Runella slithyformis DSM 19594 hypothetical protein YP_004653864.1 348825 D 761193 CDS YP_004653865.1 338209818 10868795 349423..350040 1 NC_015703.1 InterPro IPR013096; KEGG: bcj:BCAM0980 hypothetical protein; PFAM: Cupin 2, conserved barrel; SPTR: uncharacterized protein; hypothetical protein 350040 10868795 Runsl_0281 Runella slithyformis DSM 19594 hypothetical protein YP_004653865.1 349423 D 761193 CDS YP_004653866.1 338209819 10868796 350058..350384 1 NC_015703.1 PFAM: Cupin domain; COGs: COG0325 enzyme with a TIM-barrel fold; InterPro IPR011078:IPR001608; KEGG: dfe:Dfer_2011 alanine racemase domain protein; PFAM: Alanine racemase, N-terminal; SPTR: Alanine racemase domain protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; cupin 350384 10868796 Runsl_0282 Runella slithyformis DSM 19594 cupin YP_004653866.1 350058 D 761193 CDS YP_004653867.1 338209820 10868797 complement(350441..351178) 1 NC_015703.1 PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family; COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692; KEGG: npu:Npun_R3418 peptidase S45, penicillin amidase; PFAM: Peptidase S45, penicillin amidase; PRIAM: Glutaryl-7-aminocephalosporanic-acid acylase; SPTR: Penicillin amidase superfamily; hypothetical protein 351178 10868797 Runsl_0283 Runella slithyformis DSM 19594 hypothetical protein YP_004653867.1 350441 R 761193 CDS YP_004653868.1 338209821 10868798 351355..353472 1 NC_015703.1 PFAM: Penicillin amidase; glutaryl-7-aminocephalosporanic-acid acylase 353472 10868798 Runsl_0284 Runella slithyformis DSM 19594 glutaryl-7-aminocephalosporanic-acid acylase YP_004653868.1 351355 D 761193 CDS YP_004653869.1 338209822 10868799 353560..353841 1 NC_015703.1 KEGG: dfe:Dfer_2225 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 353841 10868799 Runsl_0285 Runella slithyformis DSM 19594 hypothetical protein YP_004653869.1 353560 D 761193 CDS YP_004653870.1 338209823 10868800 353877..355046 1 NC_015703.1 PFAM: Beta-propeller repeat; InterPro IPR001087; KEGG: sli:Slin_4778 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family; hypothetical protein 355046 10868800 Runsl_0286 Runella slithyformis DSM 19594 hypothetical protein YP_004653870.1 353877 D 761193 CDS YP_004653871.1 338209824 10868801 355459..356688 1 NC_015703.1 PFAM: GDSL-like Lipase/Acylhydrolase; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR013428:IPR013427; KEGG: sli:Slin_4779 dehydrogenase; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; haem-binding region; G-D-S-L family lipolytic protein 356688 10868801 Runsl_0287 Runella slithyformis DSM 19594 G-D-S-L family lipolytic protein YP_004653871.1 355459 D 761193 CDS YP_004653872.1 338209825 10868802 356712..360176 1 NC_015703.1 PFAM: Cytochrome c; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: fjo:Fjoh_4841 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; membrane-bound dehydrogenase domain-containing protein 360176 10868802 Runsl_0288 Runella slithyformis DSM 19594 membrane-bound dehydrogenase domain-containing protein YP_004653872.1 356712 D 761193 CDS YP_004653873.1 338209826 10868803 complement(360259..360723) 1 NC_015703.1 PFAM: Response regulator receiver domain; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1620 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; response regulator receiver protein 360723 10868803 Runsl_0289 Runella slithyformis DSM 19594 response regulator receiver protein YP_004653873.1 360259 R 761193 CDS YP_004653874.1 338209827 10868804 361602..364637 1 NC_015703.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_1619 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 364637 10868804 Runsl_0290 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004653874.1 361602 D 761193 CDS YP_004653875.1 338209828 10868805 364695..366068 1 NC_015703.1 PFAM: SusD family; KEGG: sli:Slin_2732 hypothetical protein; SPTR: uncharacterized protein; RagB/SusD domain-containing protein 366068 10868805 Runsl_0291 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004653875.1 364695 D 761193 CDS YP_004653876.1 338209829 10868806 366114..367457 1 NC_015703.1 KEGG: sli:Slin_2733 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 367457 10868806 Runsl_0292 Runella slithyformis DSM 19594 hypothetical protein YP_004653876.1 366114 D 761193 CDS YP_004653877.1 338209830 10868807 367485..369173 1 NC_015703.1 hypothetical protein 369173 10868807 Runsl_0293 Runella slithyformis DSM 19594 hypothetical protein YP_004653877.1 367485 D 761193 CDS YP_004653878.1 338209831 10868808 369278..369412 1 NC_015703.1 InterPro IPR003088; KEGG: sli:Slin_2734 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I; hypothetical protein 369412 10868808 Runsl_0294 Runella slithyformis DSM 19594 hypothetical protein YP_004653878.1 369278 D 761193 CDS YP_004653879.1 338209832 10868809 369488..370105 1 NC_015703.1 PFAM: Cytochrome c; COGs: COG2041 Sulfite oxidase; InterPro IPR006311:IPR000572:IPR005066; KEGG: sli:Slin_2735 oxidoreductase molybdopterin binding protein; PFAM: Oxidoreductase, molybdopterin binding; Moybdenum cofactor oxidoreductase, dimerisation; PRIAM: Nitrate reductase (NADH); SPTR: Oxidoreductase molybdopterin binding protein; cytochrome c class I 370105 10868809 Runsl_0295 Runella slithyformis DSM 19594 cytochrome c class I YP_004653879.1 369488 D 761193 CDS YP_004653880.1 338209833 10868810 370102..371337 1 NC_015703.1 PFAM: Mo-co oxidoreductase dimerisation domain; Oxidoreductase molybdopterin binding domain; InterPro IPR008775; KEGG: sli:Slin_2447 phytanoyl-CoA dioxygenase; PFAM: Phytanoyl-CoA dioxygenase; SPTR: Phytanoyl-CoA dioxygenase; nitrate reductase (NADH) 371337 10868810 Runsl_0296 Runella slithyformis DSM 19594 nitrate reductase (NADH) YP_004653880.1 370102 D 761193 CDS YP_004653881.1 338209834 10868811 371530..372342 1 NC_015703.1 PFAM: Phytanoyl-CoA dioxygenase (PhyH); COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: sli:Slin_2448 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; phytanoyl-CoA dioxygenase 372342 10868811 Runsl_0297 Runella slithyformis DSM 19594 phytanoyl-CoA dioxygenase YP_004653881.1 371530 D 761193 CDS YP_004653882.1 338209835 10868812 372359..373162 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1518 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; short-chain dehydrogenase/reductase SDR 373162 10868812 Runsl_0298 Runella slithyformis DSM 19594 short-chain dehydrogenase/reductase SDR YP_004653882.1 372359 D 761193 CDS YP_004653883.1 338209836 10868813 complement(373388..375955) 1 NC_015703.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; KEGG: fjo:Fjoh_4619 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor 375955 10868813 Runsl_0299 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004653883.1 373388 R 761193 CDS YP_004653884.1 338209837 10868814 376303..376758 1 NC_015703.1 PFAM: Domain of unknown function (DUF3291); COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR006055:IPR013520:IPR001357; KEGG: cle:Clole_0717 exonuclease RNase T and DNA polymerase III; PFAM: Exonuclease, RNase T/DNA polymerase III; BRCT; SMART: Exonuclease; SPTR: Exonuclease RNase T and DNA polymerase III; hypothetical protein 376758 10868814 Runsl_0300 Runella slithyformis DSM 19594 hypothetical protein YP_004653884.1 376303 D 761193 CDS YP_004653885.1 338209838 10868815 complement(376968..377867) 1 NC_015703.1 PFAM: Exonuclease; BRCA1 C Terminus (BRCT) domain; InterPro IPR007829; KEGG: cni:Calni_1848 hypothetical protein; SPTR: Predicted protein; Exonuclease RNase T and DNA polymerase III 377867 10868815 Runsl_0301 Runella slithyformis DSM 19594 Exonuclease RNase T and DNA polymerase III YP_004653885.1 376968 R 761193 CDS YP_004653886.1 338209839 10868816 complement(377892..378209) 1 NC_015703.1 PFAM: TM2 domain; hypothetical protein 378209 10868816 Runsl_0302 Runella slithyformis DSM 19594 hypothetical protein YP_004653886.1 377892 R 761193 CDS YP_004653887.1 338209840 10868817 complement(378499..378732) 1 NC_015703.1 KEGG: dfe:Dfer_1189 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 378732 10868817 Runsl_0303 Runella slithyformis DSM 19594 hypothetical protein YP_004653887.1 378499 R 761193 CDS YP_004653888.1 338209841 10868818 378962..379240 1 NC_015703.1 hypothetical protein 379240 10868818 Runsl_0304 Runella slithyformis DSM 19594 hypothetical protein YP_004653888.1 378962 D 761193 CDS YP_004653889.1 338209842 10868819 379237..379566 1 NC_015703.1 hypothetical protein 379566 10868819 Runsl_0305 Runella slithyformis DSM 19594 hypothetical protein YP_004653889.1 379237 D 761193 CDS YP_004653890.1 338209843 10868820 379597..379722 1 NC_015703.1 hypothetical protein 379722 10868820 Runsl_0306 Runella slithyformis DSM 19594 hypothetical protein YP_004653890.1 379597 D 761193 CDS YP_004653891.1 338209844 10868821 379750..380064 1 NC_015703.1 hypothetical protein 380064 10868821 Runsl_0307 Runella slithyformis DSM 19594 hypothetical protein YP_004653891.1 379750 D 761193 CDS YP_004653892.1 338209845 10868822 380055..380519 1 NC_015703.1 hypothetical protein 380519 10868822 Runsl_0308 Runella slithyformis DSM 19594 hypothetical protein YP_004653892.1 380055 D 761193 CDS YP_004653893.1 338209846 10868823 380516..380791 1 NC_015703.1 hypothetical protein 380791 10868823 Runsl_0309 Runella slithyformis DSM 19594 hypothetical protein YP_004653893.1 380516 D 761193 CDS YP_004653894.1 338209847 10868824 380788..381012 1 NC_015703.1 hypothetical protein 381012 10868824 Runsl_0310 Runella slithyformis DSM 19594 hypothetical protein YP_004653894.1 380788 D 761193 CDS YP_004653895.1 338209848 10868826 381356..381823 1 NC_015703.1 SPTR: uncharacterized protein; hypothetical protein 381823 10868826 Runsl_0311 Runella slithyformis DSM 19594 hypothetical protein YP_004653895.1 381356 D 761193 CDS YP_004653896.1 338209849 10868827 381801..383306 1 NC_015703.1 hypothetical protein 383306 10868827 Runsl_0312 Runella slithyformis DSM 19594 hypothetical protein YP_004653896.1 381801 D 761193 CDS YP_004653897.1 338209850 10868828 383344..383736 1 NC_015703.1 hypothetical protein 383736 10868828 Runsl_0313 Runella slithyformis DSM 19594 hypothetical protein YP_004653897.1 383344 D 761193 CDS YP_004653898.1 338209851 10868829 383733..384065 1 NC_015703.1 hypothetical protein 384065 10868829 Runsl_0314 Runella slithyformis DSM 19594 hypothetical protein YP_004653898.1 383733 D 761193 CDS YP_004653899.1 338209852 10868830 384094..384276 1 NC_015703.1 hypothetical protein 384276 10868830 Runsl_0315 Runella slithyformis DSM 19594 hypothetical protein YP_004653899.1 384094 D 761193 CDS YP_004653900.1 338209853 10868831 384363..384851 1 NC_015703.1 hypothetical protein 384851 10868831 Runsl_0316 Runella slithyformis DSM 19594 hypothetical protein YP_004653900.1 384363 D 761193 CDS YP_004653901.1 338209854 10868832 384971..385534 1 NC_015703.1 hypothetical protein 385534 10868832 Runsl_0317 Runella slithyformis DSM 19594 hypothetical protein YP_004653901.1 384971 D 761193 CDS YP_004653902.1 338209855 10868833 385538..385981 1 NC_015703.1 SPTR: uncharacterized protein; hypothetical protein 385981 10868833 Runsl_0318 Runella slithyformis DSM 19594 hypothetical protein YP_004653902.1 385538 D 761193 CDS YP_004653903.1 338209856 10868834 385990..387612 1 NC_015703.1 COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR002142; KEGG: bra:BRADO3628 hypothetical protein; PFAM: Peptidase S49; SPTR: Signal peptide peptidase SppA, 36K type; hypothetical protein 387612 10868834 Runsl_0319 Runella slithyformis DSM 19594 hypothetical protein YP_004653903.1 385990 D 761193 CDS YP_004653904.1 338209857 10868835 387720..388601 1 NC_015703.1 PFAM: Peptidase S49; TIGRFAM: signal peptide peptidase SppA, 36K type; KEGG: bbo:BBOV_II002880 85 kDa protein; SPTR: Bv80/Bb-1; peptidase S49 388601 10868835 Runsl_0320 Runella slithyformis DSM 19594 peptidase S49 YP_004653904.1 387720 D 761193 CDS YP_004653905.1 338209858 10868836 388612..389034 1 NC_015703.1 hypothetical protein 389034 10868836 Runsl_0321 Runella slithyformis DSM 19594 hypothetical protein YP_004653905.1 388612 D 761193 CDS YP_004653906.1 338209859 10868837 389064..390068 1 NC_015703.1 hypothetical protein 390068 10868837 Runsl_0322 Runella slithyformis DSM 19594 hypothetical protein YP_004653906.1 389064 D 761193 CDS YP_004653907.1 338209860 10868838 390181..390726 1 NC_015703.1 hypothetical protein 390726 10868838 Runsl_0323 Runella slithyformis DSM 19594 hypothetical protein YP_004653907.1 390181 D 761193 CDS YP_004653908.1 338209861 10868839 390969..391469 1 NC_015703.1 hypothetical protein 391469 10868839 Runsl_0324 Runella slithyformis DSM 19594 hypothetical protein YP_004653908.1 390969 D 761193 CDS YP_004653909.1 338209862 10868840 391656..391889 1 NC_015703.1 hypothetical protein 391889 10868840 Runsl_0325 Runella slithyformis DSM 19594 hypothetical protein YP_004653909.1 391656 D 761193 CDS YP_004653910.1 338209863 10868841 391916..392584 1 NC_015703.1 hypothetical protein 392584 10868841 Runsl_0326 Runella slithyformis DSM 19594 hypothetical protein YP_004653910.1 391916 D 761193 CDS YP_004653911.1 338209864 10868842 392584..392886 1 NC_015703.1 KEGG: adn:Alide_3560 ParB domain protein nuclease; SPTR: ParB domain protein nuclease; hypothetical protein 392886 10868842 Runsl_0327 Runella slithyformis DSM 19594 hypothetical protein YP_004653911.1 392584 D 761193 CDS YP_004653912.1 338209865 10868843 392911..393525 1 NC_015703.1 KEGG: bvu:BVU_2841 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 393525 10868843 Runsl_0328 Runella slithyformis DSM 19594 hypothetical protein YP_004653912.1 392911 D 761193 CDS YP_004653913.1 338209866 10868844 393516..394298 1 NC_015703.1 KEGG: fjo:Fjoh_3588 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 394298 10868844 Runsl_0329 Runella slithyformis DSM 19594 hypothetical protein YP_004653913.1 393516 D 761193 CDS YP_004653914.1 338209867 10868845 394310..394924 1 NC_015703.1 hypothetical protein 394924 10868845 Runsl_0330 Runella slithyformis DSM 19594 hypothetical protein YP_004653914.1 394310 D 761193 CDS YP_004653915.1 338209868 10868846 395083..395766 1 NC_015703.1 InterPro IPR003356; KEGG: bvu:BVU_1577 type I restriction enzyme, M subunit; PFAM: DNA methylase, adenine-specific; SPTR: Type I restriction enzyme, M subunit; hypothetical protein 395766 10868846 Runsl_0331 Runella slithyformis DSM 19594 hypothetical protein YP_004653915.1 395083 D 761193 CDS YP_004653916.1 338209869 10868847 395830..396636 1 NC_015703.1 PFAM: N-6 DNA Methylase; N-6 DNA methylase 396636 10868847 Runsl_0332 Runella slithyformis DSM 19594 N-6 DNA methylase YP_004653916.1 395830 D 761193 CDS YP_004653917.1 338209870 10868848 396778..397026 1 NC_015703.1 hypothetical protein 397026 10868848 Runsl_0333 Runella slithyformis DSM 19594 hypothetical protein YP_004653917.1 396778 D 761193 CDS YP_004653918.1 338209871 10868849 397026..397298 1 NC_015703.1 InterPro IPR014944; PFAM: Protein of unknown function DUF1813, HSP20-like; hypothetical protein 397298 10868849 Runsl_0334 Runella slithyformis DSM 19594 hypothetical protein YP_004653918.1 397026 D 761193 CDS YP_004653919.1 338209872 10868850 397375..397548 1 NC_015703.1 PFAM: HSP20-like domain of unknown function (DUF1813); COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; KEGG: efa:EF2258 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 397548 10868850 Runsl_0335 Runella slithyformis DSM 19594 hypothetical protein YP_004653919.1 397375 D 761193 CDS YP_004653920.1 338209873 10868851 397541..398110 1 NC_015703.1 PFAM: MgsA AAA+ ATPase C terminal; hypothetical protein 398110 10868851 Runsl_0336 Runella slithyformis DSM 19594 hypothetical protein YP_004653920.1 397541 D 761193 CDS YP_004653921.1 338209874 10868852 398224..398493 1 NC_015703.1 hypothetical protein 398493 10868852 Runsl_0337 Runella slithyformis DSM 19594 hypothetical protein YP_004653921.1 398224 D 761193 CDS YP_004653922.1 338209875 10868853 398564..399091 1 NC_015703.1 KEGG: osp:Odosp_2613 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 399091 10868853 Runsl_0338 Runella slithyformis DSM 19594 hypothetical protein YP_004653922.1 398564 D 761193 CDS YP_004653923.1 338209876 10868854 399084..400697 1 NC_015703.1 PFAM: Terminase-like family; hypothetical protein 400697 10868854 Runsl_0339 Runella slithyformis DSM 19594 hypothetical protein YP_004653923.1 399084 D 761193 CDS YP_004653924.1 338209877 10868855 complement(400811..401179) 1 NC_015703.1 KEGG: osp:Odosp_2618 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 401179 10868855 Runsl_0340 Runella slithyformis DSM 19594 hypothetical protein YP_004653924.1 400811 R 761193 CDS YP_004653925.1 338209878 10868856 401188..402516 1 NC_015703.1 hypothetical protein 402516 10868856 Runsl_0341 Runella slithyformis DSM 19594 hypothetical protein YP_004653925.1 401188 D 761193 CDS YP_004653926.1 338209879 10868857 402513..402710 1 NC_015703.1 KEGG: shg:Sph21_3470 hypothetical protein; hypothetical protein 402710 10868857 Runsl_0342 Runella slithyformis DSM 19594 hypothetical protein YP_004653926.1 402513 D 761193 CDS YP_004653927.1 338209880 10868858 402707..403684 1 NC_015703.1 hypothetical protein 403684 10868858 Runsl_0343 Runella slithyformis DSM 19594 hypothetical protein YP_004653927.1 402707 D 761193 CDS YP_004653928.1 338209881 10868859 403695..404417 1 NC_015703.1 hypothetical protein 404417 10868859 Runsl_0344 Runella slithyformis DSM 19594 hypothetical protein YP_004653928.1 403695 D 761193 CDS YP_004653929.1 338209882 10868860 404378..404899 1 NC_015703.1 hypothetical protein 404899 10868860 Runsl_0345 Runella slithyformis DSM 19594 hypothetical protein YP_004653929.1 404378 D 761193 CDS YP_004653930.1 338209883 10868861 404896..405021 1 NC_015703.1 hypothetical protein 405021 10868861 Runsl_0346 Runella slithyformis DSM 19594 hypothetical protein YP_004653930.1 404896 D 761193 CDS YP_004653931.1 338209884 10868862 405018..405287 1 NC_015703.1 hypothetical protein 405287 10868862 Runsl_0347 Runella slithyformis DSM 19594 hypothetical protein YP_004653931.1 405018 D 761193 CDS YP_004653932.1 338209885 10868863 405284..405661 1 NC_015703.1 hypothetical protein 405661 10868863 Runsl_0348 Runella slithyformis DSM 19594 hypothetical protein YP_004653932.1 405284 D 761193 CDS YP_004653933.1 338209886 10868864 405684..405977 1 NC_015703.1 hypothetical protein 405977 10868864 Runsl_0349 Runella slithyformis DSM 19594 hypothetical protein YP_004653933.1 405684 D 761193 CDS YP_004653934.1 338209887 10868865 405971..406774 1 NC_015703.1 KEGG: mel:Metbo_1109 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 406774 10868865 Runsl_0350 Runella slithyformis DSM 19594 hypothetical protein YP_004653934.1 405971 D 761193 CDS YP_004653935.1 338209888 10868866 complement(406793..408205) 1 NC_015703.1 hypothetical protein 408205 10868866 Runsl_0351 Runella slithyformis DSM 19594 hypothetical protein YP_004653935.1 406793 R 761193 CDS YP_004653936.1 338209889 10868867 408299..408760 1 NC_015703.1 hypothetical protein 408760 10868867 Runsl_0352 Runella slithyformis DSM 19594 hypothetical protein YP_004653936.1 408299 D 761193 CDS YP_004653937.1 338209890 10868868 408744..410744 1 NC_015703.1 hypothetical protein 410744 10868868 Runsl_0353 Runella slithyformis DSM 19594 hypothetical protein YP_004653937.1 408744 D 761193 CDS YP_004653938.1 338209891 10868869 410741..411268 1 NC_015703.1 KEGG: wvi:Weevi_0252 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 411268 10868869 Runsl_0354 Runella slithyformis DSM 19594 hypothetical protein YP_004653938.1 410741 D 761193 CDS YP_004653939.1 338209892 10868870 411368..415192 1 NC_015703.1 hypothetical protein 415192 10868870 Runsl_0355 Runella slithyformis DSM 19594 hypothetical protein YP_004653939.1 411368 D 761193 CDS YP_004653940.1 338209893 10868871 415195..416610 1 NC_015703.1 hypothetical protein 416610 10868871 Runsl_0356 Runella slithyformis DSM 19594 hypothetical protein YP_004653940.1 415195 D 761193 CDS YP_004653941.1 338209894 10868872 416681..417151 1 NC_015703.1 hypothetical protein 417151 10868872 Runsl_0357 Runella slithyformis DSM 19594 hypothetical protein YP_004653941.1 416681 D 761193 CDS YP_004653942.1 338209895 10868873 417783..417914 1 NC_015703.1 hypothetical protein 417914 10868873 Runsl_0358 Runella slithyformis DSM 19594 hypothetical protein YP_004653942.1 417783 D 761193 CDS YP_004653943.1 338209896 10868874 complement(418468..418698) 1 NC_015703.1 InterPro IPR002104; KEGG: sli:Slin_6168 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Integrase; hypothetical protein 418698 10868874 Runsl_0359 Runella slithyformis DSM 19594 hypothetical protein YP_004653943.1 418468 R 761193 CDS YP_004653944.1 338209897 10868875 complement(418732..419937) 1 NC_015703.1 PFAM: Phage integrase; integrase 419937 10868875 Runsl_0360 Runella slithyformis DSM 19594 integrase YP_004653944.1 418732 R 761193 CDS YP_004653945.1 338209898 10868877 420335..421999 1 NC_015703.1 PFAM: Amidase; KEGG: cpi:Cpin_0774 hypothetical protein; SPTR: uncharacterized protein; amidase 421999 10868877 Runsl_0361 Runella slithyformis DSM 19594 amidase YP_004653945.1 420335 D 761193 CDS YP_004653946.1 338209899 10868878 complement(422049..422828) 1 NC_015703.1 PFAM: Protein of unknown function (DUF3050); InterPro IPR007492; KEGG: phe:Phep_1585 LytTr DNA-binding subunit; PFAM: LytTr DNA-binding region; SPTR: Response regulator; hypothetical protein 422828 10868878 Runsl_0362 Runella slithyformis DSM 19594 hypothetical protein YP_004653946.1 422049 R 761193 CDS YP_004653947.1 338209900 10868879 complement(422940..423329) 1 NC_015703.1 PFAM: LytTr DNA-binding domain; InterPro IPR000834; KEGG: sli:Slin_0971 hypothetical protein; PFAM: Peptidase M14, carboxypeptidase A; SPTR: uncharacterized protein; LytTr DNA-binding protein 423329 10868879 Runsl_0363 Runella slithyformis DSM 19594 LytTr DNA-binding protein YP_004653947.1 422940 R 761193 CDS YP_004653948.1 338209901 10868880 complement(424118..426883) 1 NC_015703.1 PFAM: Zinc carboxypeptidase; peptidase M14 carboxypeptidase A 426883 10868880 Runsl_0364 Runella slithyformis DSM 19594 peptidase M14 carboxypeptidase A YP_004653948.1 424118 R 761193 CDS YP_004653949.1 338209902 10868881 427136..427405 1 NC_015703.1 SPTR: uncharacterized protein; hypothetical protein 427405 10868881 Runsl_0365 Runella slithyformis DSM 19594 hypothetical protein YP_004653949.1 427136 D 761193 CDS YP_004653950.1 338209903 10868882 complement(427426..428304) 1 NC_015703.1 COGs: COG1373 ATPase (AAA+ superfamily); KEGG: mtt:Ftrac_2734 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 428304 10868882 Runsl_0366 Runella slithyformis DSM 19594 hypothetical protein YP_004653950.1 427426 R 761193 CDS YP_004653951.1 338209904 10868883 complement(428530..429894) 1 NC_015703.1 hypothetical protein 429894 10868883 Runsl_0367 Runella slithyformis DSM 19594 hypothetical protein YP_004653951.1 428530 R 761193 CDS YP_004653952.1 338209905 10868884 429971..430171 1 NC_015703.1 InterPro IPR000834; KEGG: sli:Slin_3266 hypothetical protein; PFAM: Peptidase M14, carboxypeptidase A; SPTR: uncharacterized protein; hypothetical protein 430171 10868884 Runsl_0368 Runella slithyformis DSM 19594 hypothetical protein YP_004653952.1 429971 D 761193 CDS YP_004653953.1 338209906 10868885 complement(430328..433114) 1 NC_015703.1 PFAM: Zinc carboxypeptidase; COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151:IPR011659; KEGG: sli:Slin_5713 peptidase S41; PFAM: Peptidase S41; WD40-like Beta Propeller; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: Tricorn-like protease; peptidase M14 carboxypeptidase A 433114 10868885 Runsl_0369 Runella slithyformis DSM 19594 peptidase M14 carboxypeptidase A YP_004653953.1 430328 R 761193 CDS YP_004653954.1 338209907 10868886 433368..436553 1 NC_015703.1 PFAM: WD40-like Beta Propeller Repeat; Peptidase S41; KEGG: dfe:Dfer_2989 hypothetical protein; SPTR: uncharacterized protein; peptidase S41 436553 10868886 Runsl_0370 Runella slithyformis DSM 19594 peptidase S41 YP_004653954.1 433368 D 761193 CDS YP_004653955.1 338209908 10868887 436718..437230 1 NC_015703.1 KEGG: sli:Slin_5579 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 437230 10868887 Runsl_0371 Runella slithyformis DSM 19594 hypothetical protein YP_004653955.1 436718 D 761193 CDS YP_004653956.1 338209909 10868888 complement(437281..438105) 1 NC_015703.1 COGs: COG0274 Deoxyribose-phosphate aldolase; HAMAP: Deoxyribose-phosphate aldolase; InterPro IPR011343:IPR002915; KEGG: afv:AFLA_123760 deoxyribose-phosphate aldolase; PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PRIAM: Deoxyribose-phosphate aldolase; SPTR: Predicted protein; TIGRFAM: Deoxyribose-phosphate aldolase; hypothetical protein 438105 10868888 Runsl_0372 Runella slithyformis DSM 19594 hypothetical protein YP_004653956.1 437281 R 761193 CDS YP_004653957.1 338209910 10868889 complement(438211..438969) 1 NC_015703.1 PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase; InterPro IPR019734:IPR001440; KEGG: sli:Slin_0369 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; deoxyribose-phosphate aldolase 438969 10868889 Runsl_0373 Runella slithyformis DSM 19594 deoxyribose-phosphate aldolase YP_004653957.1 438211 R 761193 CDS YP_004653958.1 338209911 10868890 complement(439020..440351) 1 NC_015703.1 PFAM: Tetratricopeptide repeat; KEGG: sli:Slin_3278 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 440351 10868890 Runsl_0374 Runella slithyformis DSM 19594 hypothetical protein YP_004653958.1 439020 R 761193 CDS YP_004653959.1 338209912 10868891 complement(440535..441566) 1 NC_015703.1 COGs: COG1577 Mevalonate kinase; InterPro IPR006204:IPR013750; KEGG: sli:Slin_4183 GHMP kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal; SPTR: GHMP kinase; hypothetical protein 441566 10868891 Runsl_0375 Runella slithyformis DSM 19594 hypothetical protein YP_004653959.1 440535 R 761193 CDS YP_004653960.1 338209913 10868892 complement(441649..442641) 1 NC_015703.1 PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; InterPro IPR006260:IPR008756:IPR003538:IPR012910; KEGG: sli:Slin_6188 TonB family protein; PFAM: Gram-negative bacterial tonB protein; Peptidase M56, BlaR1; TonB-dependent receptor, plug; SPTR: TonB family protein; TIGRFAM: TonB, C-terminal; GHMP kinase 442641 10868892 Runsl_0376 Runella slithyformis DSM 19594 GHMP kinase YP_004653960.1 441649 R 761193 CDS YP_004653961.1 338209914 10868893 complement(442745..445060) 1 NC_015703.1 PFAM: BlaR1 peptidase M56; TonB-dependent Receptor Plug Domain; Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: sli:Slin_6189 CopY family transcriptional regulator; PFAM: Penicillinase repressor; SPTR: Transcriptional repressor, CopY family; TonB family protein 445060 10868893 Runsl_0377 Runella slithyformis DSM 19594 TonB family protein YP_004653961.1 442745 R 761193 CDS YP_004653962.1 338209915 10868894 complement(445104..445460) 1 NC_015703.1 PFAM: Penicillinase repressor; COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006056:IPR006175; KEGG: thx:Thet_1042 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP; TIGRFAM: YjgF-like protein; CopY family transcriptional repressor 445460 10868894 Runsl_0378 Runella slithyformis DSM 19594 CopY family transcriptional repressor YP_004653962.1 445104 R 761193 CDS YP_004653963.1 338209916 10868895 complement(445733..446182) 1 NC_015703.1 PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, COGs: COG3255 sterol carrier protein; InterPro IPR003033; KEGG: dfe:Dfer_4726 sterol-binding domain protein; PFAM: Sterol-binding; SPTR: Sterol-binding domain protein; endoribonuclease L-PSP 446182 10868895 Runsl_0379 Runella slithyformis DSM 19594 endoribonuclease L-PSP YP_004653963.1 445733 R 761193 CDS YP_004653964.1 338209917 10868896 446274..446573 1 NC_015703.1 PFAM: SCP-2 sterol transfer family; KEGG: dfe:Dfer_3257 hypothetical protein; SPTR: uncharacterized protein; Sterol-binding domain-containing protein 446573 10868896 Runsl_0380 Runella slithyformis DSM 19594 Sterol-binding domain-containing protein YP_004653964.1 446274 D 761193 CDS YP_004653965.1 338209918 10868897 complement(446650..446829) 1 NC_015703.1 PFAM: Histone H1-like protein Hc1; KEGG: sli:Slin_1746 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 446829 10868897 Runsl_0381 Runella slithyformis DSM 19594 hypothetical protein YP_004653965.1 446650 R 761193 CDS YP_004653966.1 338209919 10868898 complement(447096..447659) 1 NC_015703.1 COGs: COG2315 conserved hypothetical protein; InterPro IPR007351; KEGG: chu:CHU_2412 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 447659 10868898 Runsl_0382 Runella slithyformis DSM 19594 hypothetical protein YP_004653966.1 447096 R 761193 CDS YP_004653967.1 338209920 10868899 complement(447697..448047) 1 NC_015703.1 PFAM: Protein of unknown function (DUF419); KEGG: dfe:Dfer_0460 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 448047 10868899 Runsl_0383 Runella slithyformis DSM 19594 hypothetical protein YP_004653967.1 447697 R 761193 CDS YP_004653968.1 338209921 10868900 complement(448083..448382) 1 NC_015703.1 COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; InterPro IPR004588; KEGG: sli:Slin_1366 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; SPTR: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; hypothetical protein 448382 10868900 Runsl_0384 Runella slithyformis DSM 19594 hypothetical protein YP_004653968.1 448083 R 761193 CDS YP_004653969.1 338209922 10868901 complement(448348..450351) 1 NC_015703.1 PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; COGs: COG1169 Isochorismate synthase; InterPro IPR015890; KEGG: sli:Slin_0770 chorismate binding-like protein; PFAM: Chorismate binding, C-terminal; SPTR: Chorismate binding-like protein; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 450351 10868901 Runsl_0385 Runella slithyformis DSM 19594 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_004653969.1 448348 R 761193 CDS YP_004653970.1 338209923 10868902 complement(450439..451671) 1 NC_015703.1 PFAM: chorismate binding enzyme; TIGRFAM: isochorismate synthases; KEGG: phe:Phep_2153 hypothetical protein; SPTR: uncharacterized protein; manually curated; chorismate-binding protein 451671 10868902 Runsl_0386 Runella slithyformis DSM 19594 chorismate-binding protein YP_004653970.1 450439 R 761193 CDS YP_004653971.1 338209924 10868903 452150..452695 1 NC_015703.1 COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: sli:Slin_1096 fatty acid hydroxylase; PFAM: Fatty acid hydroxylase; SPTR: sterol desaturase-related protein; hypothetical protein 452695 10868903 Runsl_0387 Runella slithyformis DSM 19594 hypothetical protein YP_004653971.1 452150 D 761193 CDS YP_004653972.1 338209925 10868904 452754..453578 1 NC_015703.1 PFAM: Fatty acid hydroxylase superfamily; COGs: COG0192 S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthase; InterPro IPR002133; KEGG: lby:Lbys_1573 methionine adenosyltransferase; PFAM: S-adenosylmethionine synthetase; PRIAM: Methionine adenosyltransferase; SPTR: S-adenosylmethionine synthase; TIGRFAM: S-adenosylmethionine synthetase; fatty acid hydroxylase 453578 10868904 Runsl_0388 Runella slithyformis DSM 19594 fatty acid hydroxylase YP_004653972.1 452754 D 761193 CDS YP_004653973.1 338209926 10868905 complement(453727..455016) 1 NC_015703.1 PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, N-terminal domain; S-adenosylmethionine synthetase, central domain; TIGRFAM: S-adenosylmethionine synthetase; COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR004652:IPR001269; KEGG: sli:Slin_2392 hypothetical protein; PFAM: tRNA-dihydrouridine synthase; SPTR: tRNA-dihydrouridine synthase; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; S-adenosylmethionine synthase 455016 10868905 Runsl_0389 Runella slithyformis DSM 19594 S-adenosylmethionine synthase YP_004653973.1 453727 R 761193 CDS YP_004653974.1 338209927 10868906 455288..456277 1 NC_015703.1 PFAM: Dihydrouridine synthase (Dus); TIGRFAM: TIM-barrel protein, nifR3 family; KEGG: sli:Slin_5357 hypothetical protein; SPTR: uncharacterized protein; nitrogen regulator protein NIfR3 456277 10868906 Runsl_0390 Runella slithyformis DSM 19594 nitrogen regulator protein NIfR3 YP_004653974.1 455288 D 761193 CDS YP_004653975.1 338209928 10868907 456333..456818 1 NC_015703.1 KEGG: lby:Lbys_3070 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 456818 10868907 Runsl_0391 Runella slithyformis DSM 19594 hypothetical protein YP_004653975.1 456333 D 761193 CDS YP_004653976.1 338209929 10868908 complement(456822..457925) 1 NC_015703.1 PFAM: Protein of unknown function (DUF2891); KEGG: zpr:ZPR_1895 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 457925 10868908 Runsl_0392 Runella slithyformis DSM 19594 hypothetical protein YP_004653976.1 456822 R 761193 CDS YP_004653977.1 338209930 10868909 458448..459143 1 NC_015703.1 KEGG: sli:Slin_6414 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 459143 10868909 Runsl_0393 Runella slithyformis DSM 19594 hypothetical protein YP_004653977.1 458448 D 761193 CDS YP_004653978.1 338209931 10868910 459177..460835 1 NC_015703.1 PFAM: Uncharacterised protein family UPF0560; hypothetical protein 460835 10868910 Runsl_0394 Runella slithyformis DSM 19594 hypothetical protein YP_004653978.1 459177 D 761193 CDS YP_004653979.1 338209932 10868911 complement(460785..460913) 1 NC_015703.1 KEGG: dfe:Dfer_3783 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 460913 10868911 Runsl_0395 Runella slithyformis DSM 19594 hypothetical protein YP_004653979.1 460785 R 761193 CDS YP_004653980.1 338209933 10868912 461956..463686 1 NC_015703.1 COGs: COG2942 N-acyl-D-glucosamine 2-epimerase; InterPro IPR010819; KEGG: bth:BT_0453 N-acylglucosamine 2-epimerase; PFAM: N-acylglucosamine 2-epimerase; SPTR: N-acylglucosamine 2-epimerase; hypothetical protein 463686 10868912 Runsl_0396 Runella slithyformis DSM 19594 hypothetical protein YP_004653980.1 461956 D 761193 CDS YP_004653981.1 338209934 10868913 complement(463672..464841) 1 NC_015703.1 PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); Prodigal; This gene is disrupted by insertion of repetitive element; manually curated; N-acylglucosamine 2-epimerase 464841 10868913 Runsl_0397 Runella slithyformis DSM 19594 N-acylglucosamine 2-epimerase YP_004653981.1 463672 R 761193 CDS YP_004653982.1 338209935 10868916 complement(469446..470396) 1 NC_015703.1 PFAM: Prolyl oligopeptidase; COGs: COG2195 Di- and tripeptidase; InterPro IPR002933:IPR011650; KEGG: sli:Slin_3913 peptidase M20; PFAM: Peptidase M20; Peptidase M20, dimerisation; SPTR: Peptidase M20; dipeptidylaminopeptidase/acylaminoacyl- peptidase -like protein 470396 10868916 Runsl_0400 Runella slithyformis DSM 19594 dipeptidylaminopeptidase/acylaminoacyl- peptidase -like protein YP_004653982.1 469446 R 761193 CDS YP_004653983.1 338209936 10868917 complement(470493..471818) 1 NC_015703.1 PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; COGs: COG3342 conserved hypothetical protein; InterPro IPR010430; KEGG: gfo:GFO_3451 secreted protein containing DUF1028; PFAM: Protein of unknown function DUF1028; SPTR: Secreted protein containing DUF1028; peptidase M20 471818 10868917 Runsl_0401 Runella slithyformis DSM 19594 peptidase M20 YP_004653983.1 470493 R 761193 CDS YP_004653984.1 338209937 10868918 complement(471983..472972) 1 NC_015703.1 PFAM: Family of unknown function (DUF1028); COGs: COG5010 Flp pilus assembly protein TadD contains TPR repeats; InterProIPR019734:IPR003107:IPR011600:IPR001440:IPR 013105; KEGG: cyp:PCC8801_1300 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR2; Peptidase C14, caspase catalytic; Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; hypothetical protein 472972 10868918 Runsl_0402 Runella slithyformis DSM 19594 hypothetical protein YP_004653984.1 471983 R 761193 CDS YP_004653985.1 338209938 10868919 473376..476267 1 NC_015703.1 PFAM: Caspase domain; Tetratricopeptide repeat; KEGG: dfe:Dfer_0575 peptidase C14 caspase catalytic subunit P20; SPTR: uncharacterized protein; hypothetical protein 476267 10868919 Runsl_0403 Runella slithyformis DSM 19594 hypothetical protein YP_004653985.1 473376 D 761193 CDS YP_004653986.1 338209939 10868920 476275..477099 1 NC_015703.1 InterPro IPR000668; KEGG: sli:Slin_6485 peptidase C1A papain; PFAM: Peptidase C1A, papain C-terminal; SMART: Peptidase C1A, papain C-terminal; SPTR: Cysteine protease; hypothetical protein 477099 10868920 Runsl_0404 Runella slithyformis DSM 19594 hypothetical protein YP_004653986.1 476275 D 761193 CDS YP_004653987.1 338209940 10868921 477112..478572 1 NC_015703.1 PFAM: Papain family cysteine protease; peptidase C1A papain 478572 10868921 Runsl_0405 Runella slithyformis DSM 19594 peptidase C1A papain YP_004653987.1 477112 D 761193 CDS YP_004653988.1 338209941 10868922 complement(478598..478777) 1 NC_015703.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR019734:IPR003661:IPR003594:IPR001440; KEGG: sli:Slin_3715 histidine kinase; PFAM: ATP-binding region, ATPase-like; Tetratricopeptide TPR-1; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Tetratricopeptide repeat; SPTR: Histidine kinase; hypothetical protein 478777 10868922 Runsl_0406 Runella slithyformis DSM 19594 hypothetical protein YP_004653988.1 478598 R 761193 CDS YP_004653989.1 338209942 10868923 complement(478833..480923) 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Tetratricopeptide repeat; COGs: COG0527 Aspartokinase; InterProIPR001341:IPR001048:IPR002912:IPR005106:IPR 001342; KEGG: dfe:Dfer_3152 bifunctional aspartokinase I/homeserine dehydrogenase I; PFAM: Homoserine dehydrogenase, catalytic; Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT; Aspartate/homoserine dehydrogenase, NAD-binding; PRIAM: Aspartate kinase., Homoserine dehydrogenase; SPTR: Aspartate kinase; TIGRFAM: Aspartate kinase region; multi-sensor signal transduction histidine kinase 480923 10868923 Runsl_0407 Runella slithyformis DSM 19594 multi-sensor signal transduction histidine kinase YP_004653989.1 478833 R 761193 CDS YP_004653990.1 338209943 10868924 complement(481066..483528) 1 NC_015703.1 PFAM: Homoserine dehydrogenase; Homoserine dehydrogenase, NAD binding domain; Amino acid kinase; ACT domain; TIGRFAM: aspartate kinase, monofunctional class; aspartate kinase; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076; KEGG: dfe:Dfer_4714 glucose-methanol-choline oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; aspartate kinase 483528 10868924 Runsl_0408 Runella slithyformis DSM 19594 aspartate kinase YP_004653990.1 481066 R 761193 CDS YP_004653991.1 338209944 10868925 complement(483939..485660) 1 NC_015703.1 PFAM: GMC oxidoreductase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: sli:Slin_5717 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; FAD dependent oxidoreductase 485660 10868925 Runsl_0409 Runella slithyformis DSM 19594 FAD dependent oxidoreductase YP_004653991.1 483939 R 761193 CDS YP_004653992.1 338209945 10868926 complement(485761..486687) 1 NC_015703.1 PFAM: NAD dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 486687 10868926 Runsl_0410 Runella slithyformis DSM 19594 NAD-dependent epimerase/dehydratase YP_004653992.1 485761 R 761193 CDS YP_004653993.1 338209946 10868927 486748..486939 1 NC_015703.1 InterPro IPR010496; KEGG: fbc:FB2170_11601 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; hypothetical protein 486939 10868927 Runsl_0411 Runella slithyformis DSM 19594 hypothetical protein YP_004653993.1 486748 D 761193 CDS YP_004653994.1 338209947 10868928 486958..487644 1 NC_015703.1 PFAM: Domain of Unknown Function (DUF1080); InterPro IPR011483; KEGG: dfe:Dfer_2125 protein of unknown function DUF1593; PFAM: Protein of unknown function DUF1593; SPTR: uncharacterized protein; hypothetical protein 487644 10868928 Runsl_0412 Runella slithyformis DSM 19594 hypothetical protein YP_004653994.1 486958 D 761193 CDS YP_004653995.1 338209948 10868929 complement(487752..489164) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1593); COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076; KEGG: dfe:Dfer_4714 glucose-methanol-choline oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; hypothetical protein 489164 10868929 Runsl_0413 Runella slithyformis DSM 19594 hypothetical protein YP_004653995.1 487752 R 761193 CDS YP_004653996.1 338209949 10868930 complement(489322..491040) 1 NC_015703.1 PFAM: GMC oxidoreductase; KEGG: sli:Slin_1890 hypothetical protein; SPTR: uncharacterized protein; FAD dependent oxidoreductase 491040 10868930 Runsl_0414 Runella slithyformis DSM 19594 FAD dependent oxidoreductase YP_004653996.1 489322 R 761193 CDS YP_004653997.1 338209950 10868931 complement(491094..491645) 1 NC_015703.1 COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: sli:Slin_1481 LacI family transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; hypothetical protein 491645 10868931 Runsl_0415 Runella slithyformis DSM 19594 hypothetical protein YP_004653997.1 491094 R 761193 CDS YP_004653998.1 338209951 10868932 complement(491751..492788) 1 NC_015703.1 PFAM: Bacterial regulatory proteins, lacI family; family; InterPro IPR010905; KEGG: sli:Slin_1019 glycosyl hydrolase 88; PFAM: Glycosyl hydrolase, family 88; SPTR: Glycosyl hydrolase 88; LacI family transcriptional regulator 492788 10868932 Runsl_0416 Runella slithyformis DSM 19594 LacI family transcriptional regulator YP_004653998.1 491751 R 761193 CDS YP_004653999.1 338209952 10868933 493165..494331 1 NC_015703.1 PFAM: Glycosyl Hydrolase 88; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_1567 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; glycoside hydrolase 494331 10868933 Runsl_0417 Runella slithyformis DSM 19594 glycoside hydrolase YP_004653999.1 493165 D 761193 CDS YP_004654000.1 338209953 10868934 494400..495014 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: dfe:Dfer_4707 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; ECF subfamily RNA polymerase sigma-24 subunit 495014 10868934 Runsl_0418 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004654000.1 494400 D 761193 CDS YP_004654001.1 338209954 10868935 495107..496198 1 NC_015703.1 PFAM: FecR protein; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR011662:IPR012910:IPR000531; KEGG: sli:Slin_2454 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; anti-FecI sigma factor FecR 496198 10868935 Runsl_0419 Runella slithyformis DSM 19594 anti-FecI sigma factor FecR YP_004654001.1 495107 D 761193 CDS YP_004654002.1 338209955 10868936 496320..499727 1 NC_015703.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: sli:Slin_2453 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 499727 10868936 Runsl_0420 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004654002.1 496320 D 761193 CDS YP_004654003.1 338209956 10868937 499761..501374 1 NC_015703.1 PFAM: SusD family; RagB/SusD domain-containing protein 501374 10868937 Runsl_0421 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004654003.1 499761 D 761193 CDS YP_004654004.1 338209957 10868938 complement(501457..501900) 1 NC_015703.1 InterPro IPR010496; KEGG: fbc:FB2170_06090 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; hypothetical protein 501900 10868938 Runsl_0422 Runella slithyformis DSM 19594 hypothetical protein YP_004654004.1 501457 R 761193 CDS YP_004654005.1 338209958 10868939 502052..502951 1 NC_015703.1 PFAM: Domain of Unknown Function (DUF1080); KEGG: bcv:Bcav_3390 coagulation factor 5/8 type domain protein; SPTR: uncharacterized protein; hypothetical protein 502951 10868939 Runsl_0423 Runella slithyformis DSM 19594 hypothetical protein YP_004654005.1 502052 D 761193 CDS YP_004654006.1 338209959 10868940 502920..504785 1 NC_015703.1 PFAM: Heparinase II/III-like protein; COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR001078; KEGG: lby:Lbys_3077 catalytic domaiN-containing protein of components of various dehydrogenase complexes; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; SPTR: Catalytic domain-containing protein of components of various dehydrogenase complexes; coagulation factor 5/8 type domain-containing protein 504785 10868940 Runsl_0424 Runella slithyformis DSM 19594 coagulation factor 5/8 type domain-containing protein YP_004654006.1 502920 D 761193 CDS YP_004654007.1 338209960 10868941 504792..505601 1 NC_015703.1 PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); hypothetical protein 505601 10868941 Runsl_0425 Runella slithyformis DSM 19594 hypothetical protein YP_004654007.1 504792 D 761193 CDS YP_004654008.1 338209961 10868942 complement(505839..506036) 1 NC_015703.1 InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1683 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein 506036 10868942 Runsl_0426 Runella slithyformis DSM 19594 hypothetical protein YP_004654008.1 505839 R 761193 CDS YP_004654009.1 338209962 10868943 506233..509418 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_1684 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 509418 10868943 Runsl_0427 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004654009.1 506233 D 761193 CDS YP_004654010.1 338209963 10868944 509465..511240 1 NC_015703.1 PFAM: SusD family; Prodigal; This gene is disrupted by complex chromosomal rearrangement; manually curated; RagB/SusD domain-containing protein 511240 10868944 Runsl_0428 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004654010.1 509465 D 761193 CDS YP_004654011.1 338209964 10868945 511829..512035 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 512035 10868945 Runsl_0430 Runella slithyformis DSM 19594 hypothetical protein YP_004654011.1 511829 D 761193 CDS YP_004654012.1 338209965 10868947 513463..514677 1 NC_015703.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; KEGG: sli:Slin_2455 heparinase II/III family protein; SPTR: Heparinase II/III family protein; mandelate racemase 514677 10868947 Runsl_0432 Runella slithyformis DSM 19594 mandelate racemase YP_004654012.1 513463 D 761193 CDS YP_004654013.1 338209966 10868948 514718..516604 1 NC_015703.1 PFAM: Heparinase II/III-like protein; KEGG: rba:RB940 hypothetical protein; SPTR: uncharacterized protein; heparinase II/III family protein 516604 10868948 Runsl_0433 Runella slithyformis DSM 19594 heparinase II/III family protein YP_004654013.1 514718 D 761193 CDS YP_004654014.1 338209967 10868949 516644..518134 1 NC_015703.1 KEGG: sli:Slin_2511 YHS domain protein; SPTR: YHS domain protein; hypothetical protein 518134 10868949 Runsl_0434 Runella slithyformis DSM 19594 hypothetical protein YP_004654014.1 516644 D 761193 CDS YP_004654015.1 338209968 10868950 complement(518153..518596) 1 NC_015703.1 KEGG: sli:Slin_0582 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 518596 10868950 Runsl_0435 Runella slithyformis DSM 19594 hypothetical protein YP_004654015.1 518153 R 761193 CDS YP_004654016.1 338209969 10868951 518805..520433 1 NC_015703.1 InterPro IPR010870; KEGG: dfe:Dfer_1082 phosphate-selective porin O and P; PFAM: Phosphate-selective porin O/P; SPTR: Phosphate-selective porin O and P; hypothetical protein 520433 10868951 Runsl_0436 Runella slithyformis DSM 19594 hypothetical protein YP_004654016.1 518805 D 761193 CDS YP_004654017.1 338209970 10868952 complement(520545..521891) 1 NC_015703.1 PFAM: Phosphate-selective porin O and P; COGs: COG0446 NAD(FAD)-dependent dehydrogenase; InterPro IPR013027; KEGG: reu:Reut_A1474 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Ferredoxin--NAD(+) reductase; SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; phosphate-selective porin O and P 521891 10868952 Runsl_0437 Runella slithyformis DSM 19594 phosphate-selective porin O and P YP_004654017.1 520545 R 761193 CDS YP_004654018.1 338209971 10868953 complement(522078..523244) 1 NC_015703.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG0633 Ferredoxin; InterPro IPR001041; KEGG: azo:azo2528 ferrodoxin; PFAM: Ferredoxin; SPTR: Probable ferrodoxin; ferredoxin--NAD(+) reductase 523244 10868953 Runsl_0438 Runella slithyformis DSM 19594 ferredoxin--NAD(+) reductase YP_004654018.1 522078 R 761193 CDS YP_004654019.1 338209972 10868954 complement(523241..523561) 1 NC_015703.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: bbt:BBta_1600 3-oxoacyl-(acyl-carrier protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: 3-oxoacyl-(Acyl-carrier protein) reductase; ferredoxin 523561 10868954 Runsl_0439 Runella slithyformis DSM 19594 ferredoxin YP_004654019.1 523241 R 761193 CDS YP_004654020.1 338209973 10868955 complement(523775..524509) 1 NC_015703.1 PFAM: short chain dehydrogenase; InterPro IPR006674; KEGG: bbt:BBta_1601 hypothetical protein; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SPTR: uncharacterized protein; 3-oxoacyl-ACP reductase 524509 10868955 Runsl_0440 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004654020.1 523775 R 761193 CDS YP_004654021.1 338209974 10868956 complement(524573..525169) 1 NC_015703.1 PFAM: HD domain; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: bbt:BBta_1602 succinate-semialdehyde dehydrogenase I (NADP+) (SSDH); PFAM: Aldehyde dehydrogenase; PRIAM: Betaine-aldehyde dehydrogenase; SPTR: succinate-semialdehyde dehydrogenase I (NADP+) (SSDH); metal-dependent phosphohydrolase HD sub domain-containing protein 525169 10868956 Runsl_0441 Runella slithyformis DSM 19594 metal-dependent phosphohydrolase HD sub domain-containing protein YP_004654021.1 524573 R 761193 CDS YP_004654022.1 338209975 10868957 complement(525259..526767) 1 NC_015703.1 PFAM: Aldehyde dehydrogenase; InterPro IPR006674; KEGG: bbt:BBta_1603 hypothetical protein; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SPTR: uncharacterized protein; betaine aldehyde dehydrogenase 526767 10868957 Runsl_0442 Runella slithyformis DSM 19594 betaine aldehyde dehydrogenase YP_004654022.1 525259 R 761193 CDS YP_004654023.1 338209976 10868958 complement(526771..527358) 1 NC_015703.1 PFAM: HD domain; COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterPro IPR008279; KEGG: bbt:BBta_1604 hypothetical protein; PFAM: PEP-utilising enzyme, mobile region; SPTR: Phosphoenolpyruvate synthase; metal-dependent phosphohydrolase HD sub domain-containing protein 527358 10868958 Runsl_0443 Runella slithyformis DSM 19594 metal-dependent phosphohydrolase HD sub domain-containing protein YP_004654023.1 526771 R 761193 CDS YP_004654024.1 338209977 10868959 complement(527510..529324) 1 NC_015703.1 PFAM: PEP-utilising enzyme, mobile domain; COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterPro IPR002192; KEGG: bbt:BBta_1605 phosphoenolpyruvate synthase (pyruvate, water dikinase) (PEP synthase); PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PRIAM: Pyruvate, water dikinase; SPTR: phosphoenolpyruvate synthase (Pyruvate, water dikinase) (PEP synthase); PEP-utilizing protein mobile subunit 529324 10868959 Runsl_0444 Runella slithyformis DSM 19594 PEP-utilizing protein mobile subunit YP_004654024.1 527510 R 761193 CDS YP_004654025.1 338209978 10868960 complement(529459..530532) 1 NC_015703.1 PFAM: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: phosphoenolpyruvate synthase; COGs: COG2124 Cytochrome P450; InterPro IPR001128; KEGG: bbt:BBta_1606 cytochrome P450; PFAM: Cytochrome P450; PRIAM: Linalool 8-monooxygenase; SPTR: cytochrome P450; pyruvate, water dikinase 530532 10868960 Runsl_0445 Runella slithyformis DSM 19594 pyruvate, water dikinase YP_004654025.1 529459 R 761193 CDS YP_004654026.1 338209979 10868961 complement(530750..531985) 1 NC_015703.1 PFAM: Cytochrome P450; COGs: COG3947 Response regulator containing CheY-like receiver and SARP domains; InterPro IPR019734:IPR001440; KEGG: bbt:BBta_1607 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: uncharacterized protein; linalool 8-monooxygenase 531985 10868961 Runsl_0446 Runella slithyformis DSM 19594 linalool 8-monooxygenase YP_004654026.1 530750 R 761193 CDS YP_004654027.1 338209980 10868962 complement(532082..533569) 1 NC_015703.1 PFAM: Bacterial transcriptional activator domain; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910; KEGG: dfe:Dfer_1455 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; response regulator receiver and SARP domain-containing protein 533569 10868962 Runsl_0447 Runella slithyformis DSM 19594 response regulator receiver and SARP domain-containing protein YP_004654027.1 532082 R 761193 CDS YP_004654028.1 338209981 10868963 complement(533828..536302) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; InterPro IPR013737:IPR008902; KEGG: rbi:RB2501_00941 rhamnosidase; PFAM: Bacterial alpha-L-rhamnosidase; Bacterial alpha-L-rhamnosidase N-terminal; SPTR: rhamnosidase; TonB-dependent receptor plug 536302 10868963 Runsl_0448 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004654028.1 533828 R 761193 CDS YP_004654029.1 338209982 10868964 complement(536440..540060) 1 NC_015703.1 PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain; manually curated; alpha-L-rhamnosidase 540060 10868964 Runsl_0449 Runella slithyformis DSM 19594 alpha-L-rhamnosidase YP_004654029.1 536440 R 761193 CDS YP_004654030.1 338209983 10868966 complement(540829..541701) 1 NC_015703.1 PFAM: Calcineurin-like phosphoesterase; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR006311:IPR008274; KEGG: sli:Slin_1104 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; metallophosphoesterase 541701 10868966 Runsl_0451 Runella slithyformis DSM 19594 metallophosphoesterase YP_004654030.1 540829 R 761193 CDS YP_004654031.1 338209984 10868967 complement(541752..543887) 1 NC_015703.1 PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; InterPro IPR001041:IPR002888; KEGG: sli:Slin_1103 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; Ferredoxin; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: (2Fe-2S)-binding domain protein; isoquinoline 1-oxidoreductase 543887 10868967 Runsl_0452 Runella slithyformis DSM 19594 isoquinoline 1-oxidoreductase YP_004654031.1 541752 R 761193 CDS YP_004654032.1 338209985 10868968 complement(543963..544424) 1 NC_015703.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain; SPTR: uncharacterized protein; isoquinoline 1-oxidoreductase 544424 10868968 Runsl_0453 Runella slithyformis DSM 19594 isoquinoline 1-oxidoreductase YP_004654032.1 543963 R 761193 CDS YP_004654033.1 338209986 10868969 545336..545806 1 NC_015703.1 manually curated; hypothetical protein 545806 10868969 Runsl_0454 Runella slithyformis DSM 19594 hypothetical protein YP_004654033.1 545336 D 761193 CDS YP_004654034.1 338209987 10868971 complement(546396..546764) 1 NC_015703.1 KEGG: sli:Slin_2632 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 546764 10868971 Runsl_0456 Runella slithyformis DSM 19594 hypothetical protein YP_004654034.1 546396 R 761193 CDS YP_004654035.1 338209988 10868972 complement(546842..548974) 1 NC_015703.1 InterPro IPR000086; KEGG: dfe:Dfer_2189 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; hypothetical protein 548974 10868972 Runsl_0457 Runella slithyformis DSM 19594 hypothetical protein YP_004654035.1 546842 R 761193 CDS YP_004654036.1 338209989 10868973 549351..550076 1 NC_015703.1 PFAM: NUDIX domain; COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: rfr:Rfer_2445 aldo/keto reductase; PFAM: Aldo/keto reductase; PRIAM: Pyridoxine 4-dehydrogenase; SPTR: Pyridoxine 4-dehydrogenase; NUDIX hydrolase 550076 10868973 Runsl_0458 Runella slithyformis DSM 19594 NUDIX hydrolase YP_004654036.1 549351 D 761193 CDS YP_004654037.1 338209990 10868974 complement(550525..551511) 1 NC_015703.1 PFAM: Aldo/keto reductase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: cts:Ctha_0791 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; pyridoxine 4-dehydrogenase 551511 10868974 Runsl_0459 Runella slithyformis DSM 19594 pyridoxine 4-dehydrogenase YP_004654037.1 550525 R 761193 CDS YP_004654038.1 338209991 10868975 complement(551611..552501) 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; Prodigal; manually curated; AraC family transcriptional regulator 552501 10868975 Runsl_0460 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004654038.1 551611 R 761193 CDS YP_004654039.1 338209992 10868977 553558..554103 1 NC_015703.1 PFAM: Protein of unknown function (DUF2911); InterPro IPR000421:IPR006104; KEGG: dfe:Dfer_1521 glycoside hydrolase 2 sugar binding; PFAM: Coagulation factor 5/8 type, C-terminal; Glycoside hydrolase 2, carbohydrate-binding; SPTR: Glycoside hydrolase 2 sugar binding; hypothetical protein 554103 10868977 Runsl_0462 Runella slithyformis DSM 19594 hypothetical protein YP_004654039.1 553558 D 761193 CDS YP_004654040.1 338209993 10868978 complement(554222..557527) 1 NC_015703.1 PFAM: Glycosyl hydrolases family 2, sugar binding domain; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: dfe:Dfer_3436 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; coagulation factor 5/8 type domain-containing protein 557527 10868978 Runsl_0463 Runella slithyformis DSM 19594 coagulation factor 5/8 type domain-containing protein YP_004654040.1 554222 R 761193 CDS YP_004654041.1 338209994 10868979 complement(557588..558469) 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; InterPro IPR013097; KEGG: rle:RL2214 hypothetical protein; PFAM: Stress responsive alpha-beta barrel; SPTR: uncharacterized protein; xylose isomerase domain-containing protein 558469 10868979 Runsl_0464 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004654041.1 557588 R 761193 CDS YP_004654042.1 338209995 10868980 complement(558517..558810) 1 NC_015703.1 PFAM: Stress responsive A/B Barrel Domain; InterPro IPR013737:IPR008902; KEGG: lby:Lbys_2344 alpha-L-rhamnosidase; PFAM: Bacterial alpha-L-rhamnosidase; Bacterial alpha-L-rhamnosidase N-terminal; SPTR: Alpha-L-rhamnosidase; stress responsive alpha-beta barrel domain-containing protein 558810 10868980 Runsl_0465 Runella slithyformis DSM 19594 stress responsive alpha-beta barrel domain-containing protein YP_004654042.1 558517 R 761193 CDS YP_004654043.1 338209996 10868981 complement(558958..561351) 1 NC_015703.1 PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain; SPTR: Transposase IS4 family protein; alpha-L-rhamnosidase 561351 10868981 Runsl_0466 Runella slithyformis DSM 19594 alpha-L-rhamnosidase YP_004654043.1 558958 R 761193 CDS YP_004654044.1 338209997 10868982 561482..562828 1 NC_015703.1 hypothetical protein 562828 10868982 Runsl_0467 Runella slithyformis DSM 19594 hypothetical protein YP_004654044.1 561482 D 761193 CDS YP_004654045.1 338209998 10868983 562878..562982 1 NC_015703.1 COGs: COG0657 Esterase/lipase; InterPro IPR013094; KEGG: rbi:RB2501_00881 lipase/esterase; SPTR: Probable lipase/esterase; hypothetical protein 562982 10868983 Runsl_0468 Runella slithyformis DSM 19594 hypothetical protein YP_004654045.1 562878 D 761193 CDS YP_004654046.1 338209999 10868984 complement(562962..563876) 1 NC_015703.1 PFAM: alpha/beta hydrolase fold; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: pst:PSPTO_3052 major facilitator family transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; lipase/esterase 563876 10868984 Runsl_0469 Runella slithyformis DSM 19594 lipase/esterase YP_004654046.1 562962 R 761193 CDS YP_004654047.1 338210000 10868985 complement(564151..565371) 1 NC_015703.1 PFAM: Major Facilitator Superfamily; COGs: COG2382 Enterochelin esterase; InterPro IPR004193:IPR000801; KEGG: sli:Slin_1256 esterase; PFAM: esterase; Glycoside hydrolase, family 13, N-terminal; SPTR: esterase; major facilitator superfamily protein 565371 10868985 Runsl_0470 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004654047.1 564151 R 761193 CDS YP_004654048.1 338210001 10868986 complement(565450..566589) 1 NC_015703.1 PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); esterase; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: sli:Slin_1327 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; esterase 566589 10868986 Runsl_0471 Runella slithyformis DSM 19594 esterase YP_004654048.1 565450 R 761193 CDS YP_004654049.1 338210002 10868987 566827..567504 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); COGs: COG1878 metal-dependent hydrolase; InterPro IPR007325; KEGG: sli:Slin_1543 cyclase; PFAM: cyclase; SPTR: Cyclase; hypothetical protein 567504 10868987 Runsl_0472 Runella slithyformis DSM 19594 hypothetical protein YP_004654049.1 566827 D 761193 CDS YP_004654050.1 338210003 10868988 complement(567552..568313) 1 NC_015703.1 PFAM: cyclase; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: sli:Slin_0741 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; cyclase 568313 10868988 Runsl_0473 Runella slithyformis DSM 19594 cyclase YP_004654050.1 567552 R 761193 CDS YP_004654051.1 338210004 10868989 568359..568985 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); manually curated; hypothetical protein 568985 10868989 Runsl_0474 Runella slithyformis DSM 19594 hypothetical protein YP_004654051.1 568359 D 761193 CDS YP_004654052.1 338210005 10868991 complement(569186..570139) 1 NC_015703.1 PFAM: Fumarylacetoacetate (FAA) hydrolase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: mrb:Mrub_2546 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; fumarylacetoacetate (FAA) hydrolase 570139 10868991 Runsl_0476 Runella slithyformis DSM 19594 fumarylacetoacetate (FAA) hydrolase YP_004654052.1 569186 R 761193 CDS YP_004654053.1 338210006 10868992 complement(570146..570928) 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG0141 Histidinol dehydrogenase; HAMAP: Histidinol dehydrogenase, prokaryotic-type; InterPro IPR012131; KEGG: ara:Arad_12308 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase, prokaryotic-type; PRIAM: Histidinol dehydrogenase; SPTR: Histidinol dehydrogenase; TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; 3-oxoacyl-ACP reductase 570928 10868992 Runsl_0477 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004654053.1 570146 R 761193 CDS YP_004654054.1 338210007 10868993 complement(570965..572254) 1 NC_015703.1 PFAM: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; COGs: COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; InterPro IPR002938; KEGG: nar:Saro_3428 monooxygenase, FAD-binding; PFAM: Monooxygenase, FAD-binding; SPTR: Monooxygenase, FAD-binding; histidinol dehydrogenase 572254 10868993 Runsl_0478 Runella slithyformis DSM 19594 histidinol dehydrogenase YP_004654054.1 570965 R 761193 CDS YP_004654055.1 338210008 10868994 complement(572303..573439) 1 NC_015703.1 PFAM: FAD binding domain; SPTR: uncharacterized protein; monooxygenase FAD-binding protein 573439 10868994 Runsl_0479 Runella slithyformis DSM 19594 monooxygenase FAD-binding protein YP_004654055.1 572303 R 761193 CDS YP_004654056.1 338210009 10868995 573567..573809 1 NC_015703.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR010520; KEGG: sli:Slin_1547 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 573809 10868995 Runsl_0480 Runella slithyformis DSM 19594 hypothetical protein YP_004654056.1 573567 D 761193 CDS YP_004654057.1 338210010 10868996 complement(573860..574972) 1 NC_015703.1 PFAM: Alpha/beta hydrolase of unknown function (DUF1100); InterPro IPR004360; KEGG: sli:Slin_1548 catechol 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; PRIAM: Biphenyl-2,3-diol 1,2-dioxygenase; SPTR: Catechol 2,3-dioxygenase; hypothetical protein 574972 10868996 Runsl_0481 Runella slithyformis DSM 19594 hypothetical protein YP_004654057.1 573860 R 761193 CDS YP_004654058.1 338210011 10868997 complement(575086..576075) 1 NC_015703.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG0684 Demethylmenaquinone methyltransferase; KEGG: shg:Sph21_2770 demethylmenaquinone methyltransferase-like protein; SPTR: uncharacterized protein; biphenyl 2,3-dioxygenase 576075 10868997 Runsl_0482 Runella slithyformis DSM 19594 biphenyl 2,3-dioxygenase YP_004654058.1 575086 R 761193 CDS YP_004654059.1 338210012 10868998 576613..577566 1 NC_015703.1 PFAM: Demethylmenaquinone methyltransferase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: sli:Slin_1550 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; demethylmenaquinone methyltransferase-like protein 577566 10868998 Runsl_0483 Runella slithyformis DSM 19594 demethylmenaquinone methyltransferase-like protein YP_004654059.1 576613 D 761193 CDS YP_004654060.1 338210013 10868999 complement(577851..578759) 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: zpr:ZPR_1603 esterase/lipase-like protein; PFAM: Lipase, GDSL; SPTR: Esterase/lipase-like protein; AraC family transcriptional regulator 578759 10868999 Runsl_0484 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004654060.1 577851 R 761193 CDS YP_004654061.1 338210014 10869000 complement(578890..580452) 1 NC_015703.1 PFAM: GDSL-like Lipase/Acylhydrolase; Dienelactone hydrolase; COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: sli:Slin_2686 LacI family transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; G-D-S-L family lipolytic protein 580452 10869000 Runsl_0485 Runella slithyformis DSM 19594 G-D-S-L family lipolytic protein YP_004654061.1 578890 R 761193 CDS YP_004654062.1 338210015 10869001 complement(580518..581537) 1 NC_015703.1 PFAM: Bacterial regulatory proteins, lacI family; family; COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764:IPR002772; KEGG: sli:Slin_2687 glycoside hydrolase; PFAM: Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal; PRIAM: Xylan 1,4-beta-xylosidase; SPTR: Glycoside hydrolase 3 domain protein; LacI family transcriptional regulator 581537 10869001 Runsl_0486 Runella slithyformis DSM 19594 LacI family transcriptional regulator YP_004654062.1 580518 R 761193 CDS YP_004654063.1 338210016 10869002 581824..583848 1 NC_015703.1 PFAM: Glycosyl hydrolase 3 C terminal domain; Glycosyl hydrolase 3 N terminal domain; KEGG: sli:Slin_4148 hypothetical protein; SPTR: uncharacterized protein; xylan 1,4-beta-xylosidase 583848 10869002 Runsl_0487 Runella slithyformis DSM 19594 xylan 1,4-beta-xylosidase YP_004654063.1 581824 D 761193 CDS YP_004654064.1 338210017 10869003 complement(583933..584235) 1 NC_015703.1 InterPro IPR010839; KEGG: sli:Slin_4147 hypothetical protein; PFAM: Protein of unknown function DUF1446; SPTR: uncharacterized protein; hypothetical protein 584235 10869003 Runsl_0488 Runella slithyformis DSM 19594 hypothetical protein YP_004654064.1 583933 R 761193 CDS YP_004654065.1 338210018 10869004 complement(584249..585577) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1446); KEGG: sli:Slin_4519 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 585577 10869004 Runsl_0489 Runella slithyformis DSM 19594 hypothetical protein YP_004654065.1 584249 R 761193 CDS YP_004654066.1 338210019 10869005 complement(585577..586176) 1 NC_015703.1 COGs: COG2851 H+/citrate symporter; InterPro IPR014738:IPR004680; KEGG: sli:Slin_4146 citrate/H+ symporter, CitMHS family; PFAM: Divalent ion symporter; SPTR: Citrate/H+ symporter, CitMHS family; TIGRFAM: Citrate transporter; hypothetical protein 586176 10869005 Runsl_0490 Runella slithyformis DSM 19594 hypothetical protein YP_004654066.1 585577 R 761193 CDS YP_004654067.1 338210020 10869006 complement(586243..587538) 1 NC_015703.1 PFAM: Citrate transporter; TIGRFAM: citrate transporter, CitMHS family; COGs: COG2272 Carboxylesterase type B; InterPro IPR002018; KEGG: sli:Slin_4145 carboxylesterase; PFAM: Carboxylesterase, type B; SPTR: Carboxylesterase; CitMHS family citrate/H+ symporter 587538 10869006 Runsl_0491 Runella slithyformis DSM 19594 CitMHS family citrate/H+ symporter YP_004654067.1 586243 R 761193 CDS YP_004654068.1 338210021 10869007 complement(587658..589271) 1 NC_015703.1 PFAM: Carboxylesterase; COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: lby:Lbys_0275 esterase; PFAM: esterase; SPTR: Esterase; carboxylesterase type B 589271 10869007 Runsl_0492 Runella slithyformis DSM 19594 carboxylesterase type B YP_004654068.1 587658 R 761193 CDS YP_004654069.1 338210022 10869008 complement(589365..590393) 1 NC_015703.1 PFAM: esterase; InterPro IPR006311:IPR012307; KEGG: dfe:Dfer_0286 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; esterase 590393 10869008 Runsl_0493 Runella slithyformis DSM 19594 esterase YP_004654069.1 589365 R 761193 CDS YP_004654070.1 338210023 10869009 complement(590481..591482) 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG2272 Carboxylesterase type B; InterPro IPR002018; KEGG: rbi:RB2501_13134 esterase; PFAM: Carboxylesterase, type B; SPTR: esterase; xylose isomerase domain-containing protein 591482 10869009 Runsl_0494 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004654070.1 590481 R 761193 CDS YP_004654071.1 338210024 10869010 complement(591533..593167) 1 NC_015703.1 PFAM: Carboxylesterase; COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: sli:Slin_0652 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: uncharacterized protein; carboxylesterase type B 593167 10869010 Runsl_0495 Runella slithyformis DSM 19594 carboxylesterase type B YP_004654071.1 591533 R 761193 CDS YP_004654072.1 338210025 10869011 593253..593987 1 NC_015703.1 PFAM: NUDIX domain; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: cpi:Cpin_4312 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; NUDIX hydrolase 593987 10869011 Runsl_0496 Runella slithyformis DSM 19594 NUDIX hydrolase YP_004654072.1 593253 D 761193 CDS YP_004654073.1 338210026 10869012 594568..595590 1 NC_015703.1 PFAM: NAD dependent epimerase/dehydratase; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: cpi:Cpin_4313 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; NAD-dependent epimerase/dehydratase 595590 10869012 Runsl_0497 Runella slithyformis DSM 19594 NAD-dependent epimerase/dehydratase YP_004654073.1 594568 D 761193 CDS YP_004654074.1 338210027 10869013 595613..596191 1 NC_015703.1 PFAM: Cyclic nucleotide-binding domain; COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154:IPR013149; KEGG: oih:OB3353 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; PRIAM: L-iditol 2-dehydrogenase; SPTR: Alcohol dehydrogenase; Crp/Fnr family transcriptional regulator 596191 10869013 Runsl_0498 Runella slithyformis DSM 19594 Crp/Fnr family transcriptional regulator YP_004654074.1 595613 D 761193 CDS YP_004654075.1 338210028 10869014 complement(596380..597393) 1 NC_015703.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: dae:Dtox_3261 filamentation induced by cAMP protein Fic; PFAM: Filamentation induced by cAMP/death on curing, related; SPTR: Filamentation induced by cAMP protein Fic; L-iditol 2-dehydrogenase 597393 10869014 Runsl_0499 Runella slithyformis DSM 19594 L-iditol 2-dehydrogenase YP_004654075.1 596380 R 761193 CDS YP_004654076.1 338210029 10869015 complement(597396..598853) 1 NC_015703.1 PFAM: Fic/DOC family; KEGG: sen:SACE_2822 MFS superfamily vanillate transporter; SPTR: Vanillate transporter (MFS superfamily); Fic family protein 598853 10869015 Runsl_0500 Runella slithyformis DSM 19594 Fic family protein YP_004654076.1 597396 R 761193 CDS YP_004654077.1 338210030 10869016 599157..599453 1 NC_015703.1 SPTR: Transposase IS4 family protein; hypothetical protein 599453 10869016 Runsl_0501 Runella slithyformis DSM 19594 hypothetical protein YP_004654077.1 599157 D 761193 CDS YP_004654078.1 338210031 10869017 complement(599552..600898) 1 NC_015703.1 COGs: COG2159 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: sli:Slin_1557 amidohydrolase 2; PFAM: Amidohydrolase 2; SPTR: Amidohydrolase 2; hypothetical protein 600898 10869017 Runsl_0502 Runella slithyformis DSM 19594 hypothetical protein YP_004654078.1 599552 R 761193 CDS YP_004654079.1 338210032 10869018 complement(601188..602054) 1 NC_015703.1 PFAM: Amidohydrolase; amidohydrolase 602054 10869018 Runsl_0503 Runella slithyformis DSM 19594 amidohydrolase YP_004654079.1 601188 R 761193 CDS YP_004654080.1 338210033 10869019 602074..602211 1 NC_015703.1 KEGG: pru:PRU_0821 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 602211 10869019 Runsl_0504 Runella slithyformis DSM 19594 hypothetical protein YP_004654080.1 602074 D 761193 CDS YP_004654081.1 338210034 10869020 602222..602578 1 NC_015703.1 PFAM: S23 ribosomal protein; TIGRFAM: TIGR02436 family protein; KEGG: sli:Slin_1558 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 602578 10869020 Runsl_0505 Runella slithyformis DSM 19594 hypothetical protein YP_004654081.1 602222 D 761193 CDS YP_004654082.1 338210035 10869021 complement(602666..603781) 1 NC_015703.1 PFAM: Prolyl oligopeptidase; COGs: COG0620 Methionine synthase II (cobalamin-independent); InterPro IPR002629; KEGG: sli:Slin_1559 methionine synthase vitamin-B12 independent; PFAM: Methionine synthase, vitamin-B12 independent; SPTR: Methionine synthase vitamin-B12 independent; hypothetical protein 603781 10869021 Runsl_0506 Runella slithyformis DSM 19594 hypothetical protein YP_004654082.1 602666 R 761193 CDS YP_004654083.1 338210036 10869022 complement(603800..604906) 1 NC_015703.1 PFAM: Cobalamin-independent synthase, Catalytic domain; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: pag:PLES_27401 short-chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-hydroxy-2-methylbutyryl-CoA dehydrogenase; SPTR: Short-chain dehydrogenase/reductase SDR; vitamin-B12 independent methionine synthase 604906 10869022 Runsl_0507 Runella slithyformis DSM 19594 vitamin-B12 independent methionine synthase YP_004654083.1 603800 R 761193 CDS YP_004654084.1 338210037 10869023 complement(604960..605754) 1 NC_015703.1 PFAM: short chain dehydrogenase; KEGG: bvu:BVU_0335 hypothetical protein; SPTR: uncharacterized protein; 3-hydroxy-2-methylbutyryl-CoA dehydrogenase 605754 10869023 Runsl_0508 Runella slithyformis DSM 19594 3-hydroxy-2-methylbutyryl-CoA dehydrogenase YP_004654084.1 604960 R 761193 CDS YP_004654085.1 338210038 10869024 complement(605839..606240) 1 NC_015703.1 COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: sli:Slin_1560 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: AMP-dependent synthetase and ligase; hypothetical protein 606240 10869024 Runsl_0509 Runella slithyformis DSM 19594 hypothetical protein YP_004654085.1 605839 R 761193 CDS YP_004654086.1 338210039 10869025 complement(606285..608081) 1 NC_015703.1 PFAM: AMP-binding enzyme; COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: sli:Slin_1561 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR: Enoyl-CoA hydratase/isomerase; long-chain-fatty-acid--CoA ligase 608081 10869025 Runsl_0510 Runella slithyformis DSM 19594 long-chain-fatty-acid--CoA ligase YP_004654086.1 606285 R 761193 CDS YP_004654087.1 338210040 10869026 complement(608094..608849) 1 NC_015703.1 PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase 608849 10869026 Runsl_0511 Runella slithyformis DSM 19594 enoyl-CoA hydratase YP_004654087.1 608094 R 761193 CDS YP_004654088.1 338210041 10869027 609009..609233 1 NC_015703.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: sli:Slin_1550 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; hypothetical protein 609233 10869027 Runsl_0512 Runella slithyformis DSM 19594 hypothetical protein YP_004654088.1 609009 D 761193 CDS YP_004654089.1 338210042 10869028 complement(609184..610086) 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain; KEGG: rbi:RB2501_01071 hypothetical protein; SPTR: uncharacterized protein; AraC family transcriptional regulator 610086 10869028 Runsl_0513 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004654089.1 609184 R 761193 CDS YP_004654090.1 338210043 10869029 complement(610414..611187) 1 NC_015703.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: sli:Slin_2180 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; hypothetical protein 611187 10869029 Runsl_0514 Runella slithyformis DSM 19594 hypothetical protein YP_004654090.1 610414 R 761193 CDS YP_004654091.1 338210044 10869030 611344..612231 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076:IPR000172; KEGG: sli:Slin_4690 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; AraC family transcriptional regulator 612231 10869030 Runsl_0515 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004654091.1 611344 D 761193 CDS YP_004654092.1 338210045 10869031 complement(612290..614005) 1 NC_015703.1 PFAM: GMC oxidoreductase; KEGG: sli:Slin_4689 hypothetical protein; SPTR: uncharacterized protein; glucose-methanol-choline oxidoreductase 614005 10869031 Runsl_0516 Runella slithyformis DSM 19594 glucose-methanol-choline oxidoreductase YP_004654092.1 612290 R 761193 CDS YP_004654093.1 338210046 10869032 complement(614086..614643) 1 NC_015703.1 KEGG: sli:Slin_1562 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 614643 10869032 Runsl_0517 Runella slithyformis DSM 19594 hypothetical protein YP_004654093.1 614086 R 761193 CDS YP_004654094.1 338210047 10869033 complement(614806..615255) 1 NC_015703.1 PFAM: Protein of unknown function (DUF3237); COGs: COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; InterPro IPR006076; KEGG: sli:Slin_0336 monooxygenase FAD-binding protein; PFAM: FAD dependent oxidoreductase; SPTR: Monooxygenase FAD-binding protein; hypothetical protein 615255 10869033 Runsl_0518 Runella slithyformis DSM 19594 hypothetical protein YP_004654094.1 614806 R 761193 CDS YP_004654095.1 338210048 10869034 complement(615332..616567) 1 NC_015703.1 PFAM: FAD binding domain; COGs: COG2814 Arabinose efflux permease; InterPro IPR004812:IPR011701; KEGG: dfe:Dfer_1982 drug resistance transporter, Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1; SPTR: Drug resistance transporter, Bcr/CflA subfamily; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; FAD dependent oxidoreductase 616567 10869034 Runsl_0519 Runella slithyformis DSM 19594 FAD dependent oxidoreductase YP_004654095.1 615332 R 761193 CDS YP_004654096.1 338210049 10869035 complement(616748..617941) 1 NC_015703.1 PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; Multidrug resistance protein; COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR012793:IPR002155; KEGG: sli:Slin_1532 beta-ketoadipyl CoA thiolase; PRIAM: 3-oxoadipyl-CoA thiolase; SPTR: Beta-ketoadipyl CoA thiolase; TIGRFAM: Beta-ketoadipyl CoA thiolase; Thiolase; Bcr/CflA subfamily drug resistance transporter 617941 10869035 Runsl_0520 Runella slithyformis DSM 19594 Bcr/CflA subfamily drug resistance transporter YP_004654096.1 616748 R 761193 CDS YP_004654097.1 338210050 10869036 complement(618064..619272) 1 NC_015703.1 PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; 3-oxoadipyl-CoA thiolase; COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: dfe:Dfer_4042 hypothetical protein; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; beta-ketoadipyl CoA thiolase 619272 10869036 Runsl_0521 Runella slithyformis DSM 19594 beta-ketoadipyl CoA thiolase YP_004654097.1 618064 R 761193 CDS YP_004654098.1 338210051 10869037 complement(619269..620399) 1 NC_015703.1 COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; InterPro IPR012792:IPR012791:IPR004165; KEGG: sli:Slin_1533 3-oxoacid CoA-transferase subunit beta; PFAM: Coenzyme A transferase; PRIAM: 3-oxoacid CoA-transferase; SPTR: 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; 3-oxoacid CoA-transferase, subunit A; ATPase AAA 620399 10869037 Runsl_0522 Runella slithyformis DSM 19594 ATPase AAA YP_004654098.1 619269 R 761193 CDS YP_004654099.1 338210052 10869038 complement(620494..621840) 1 NC_015703.1 PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; 3-oxoacid CoA-transferase, A subunit; KEGG: npu:Npun_F0423 hypothetical protein; SPTR: uncharacterized protein; 3-oxoacid CoA-transferase subunit B 621840 10869038 Runsl_0523 Runella slithyformis DSM 19594 3-oxoacid CoA-transferase subunit B YP_004654099.1 620494 R 761193 CDS YP_004654100.1 338210053 10869039 621884..622123 1 NC_015703.1 InterPro IPR003615:IPR002711; KEGG: cyj:Cyan7822_6695 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: HNH endonuclease; hypothetical protein 622123 10869039 Runsl_0524 Runella slithyformis DSM 19594 hypothetical protein YP_004654100.1 621884 D 761193 CDS YP_004654101.1 338210054 10869040 622120..622506 1 NC_015703.1 PFAM: HNH endonuclease; COGs: COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; InterPro IPR002938; KEGG: sli:Slin_1534 4-hydroxybenzoate 3-monooxygenase; PFAM: Monooxygenase, FAD-binding; PRIAM: 4-hydroxybenzoate 3-monooxygenase; SPTR: 4-hydroxybenzoate 3-monooxygenase; HNH endonuclease 622506 10869040 Runsl_0525 Runella slithyformis DSM 19594 HNH endonuclease YP_004654101.1 622120 D 761193 CDS YP_004654102.1 338210055 10869041 complement(622509..623699) 1 NC_015703.1 PFAM: FAD binding domain; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR012790:IPR012788:IPR000073:IPR003779; KEGG: sli:Slin_1535 3-oxoadipate enol-lactonase; PFAM: Carboxymuconolactone decarboxylase; Alpha/beta hydrolase fold-1; PRIAM: 3-oxoadipate enol-lactonase., 4-carboxymuconolactone decarboxylase; SPTR: 3-oxoadipate enol-lactonase; TIGRFAM: 3-oxoadipate enol-lactonase; 4-carboxymuconolactone decarboxylase; 4-hydroxybenzoate 3-monooxygenase 623699 10869041 Runsl_0526 Runella slithyformis DSM 19594 4-hydroxybenzoate 3-monooxygenase YP_004654102.1 622509 R 761193 CDS YP_004654103.1 338210056 10869042 complement(623800..624930) 1 NC_015703.1 PFAM: Carboxymuconolactone decarboxylase; alpha/beta hydrolase fold; TIGRFAM: 4-carboxymuconolactone decarboxylase; 3-oxoadipate enol-lactonase; COGs: COG0015 Adenylosuccinate lyase; InterPro IPR012789:IPR000362:IPR019468; KEGG: sli:Slin_1536 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: Fumarate lyase; Adenylosuccinate lyase, C-terminal; PRIAM: 3-carboxy-cis,cis-muconate cycloisomerase; SPTR: 3-carboxy-cis,cis-muconate cycloisomerase; TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; 3-oxoadipate enol-lactonase 624930 10869042 Runsl_0527 Runella slithyformis DSM 19594 3-oxoadipate enol-lactonase YP_004654103.1 623800 R 761193 CDS YP_004654104.1 338210057 10869043 complement(625090..626406) 1 NC_015703.1 PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; COGs: COG3485 Protocatechuate 3 4-dioxygenase beta subunit; InterPro IPR012786:IPR000627; KEGG: sli:Slin_1537 protocatechuate 3,4-dioxygenase subunit alpha; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; PRIAM: Protocatechuate 3,4-dioxygenase; SPTR: Protocatechuate 3,4-dioxygenase, alpha subunit; TIGRFAM: Protocatechuate 3,4-dioxygenase, alpha subunit; 3-carboxy-cis,cis-muconate cycloisomerase 626406 10869043 Runsl_0528 Runella slithyformis DSM 19594 3-carboxy-cis,cis-muconate cycloisomerase YP_004654104.1 625090 R 761193 CDS YP_004654105.1 338210058 10869044 complement(626579..627103) 1 NC_015703.1 TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; COGs: COG3485 Protocatechuate 3 4-dioxygenase beta subunit; InterPro IPR012785:IPR000627; KEGG: sli:Slin_1538 protocatechuate 3,4-dioxygenase subunit beta; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; PRIAM: Protocatechuate 3,4-dioxygenase; SPTR: Protocatechuate 3,4-dioxygenase, beta subunit; TIGRFAM: Protocatechuate 3,4-dioxygenase, beta subunit; protocatechuate 3,4-dioxygenase subunit alpha 627103 10869044 Runsl_0529 Runella slithyformis DSM 19594 protocatechuate 3,4-dioxygenase subunit alpha YP_004654105.1 626579 R 761193 CDS YP_004654106.1 338210059 10869045 complement(627235..627942) 1 NC_015703.1 PFAM: Protocatechuate 3,4-dioxygenase beta subunit N terminal; Dioxygenase; TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: sli:Slin_1539 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; protocatechuate 3,4-dioxygenase subunit beta 627942 10869045 Runsl_0530 Runella slithyformis DSM 19594 protocatechuate 3,4-dioxygenase subunit beta YP_004654106.1 627235 R 761193 CDS YP_004654107.1 338210060 10869046 628187..629059 1 NC_015703.1 PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: sli:Slin_1556 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; AraC family transcriptional regulator 629059 10869046 Runsl_0531 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004654107.1 628187 D 761193 CDS YP_004654108.1 338210061 10869047 complement(629140..630438) 1 NC_015703.1 PFAM: Major Facilitator Superfamily; TIGRFAM: benzoate transport; COGs: COG1350 alternative tryptophan synthase beta-subunit (paralog of TrpB); HAMAP: Tryptophan synthase beta chain; InterPro IPR006316:IPR001926; KEGG: cag:Cagg_2123 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Tryptophan synthase; SPTR: uncharacterized protein; TIGRFAM: Tryptophan synthase, beta chain-like; major facilitator superfamily protein 630438 10869047 Runsl_0532 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004654108.1 629140 R 761193 CDS YP_004654109.1 338210062 10869048 630746..632116 1 NC_015703.1 PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: pyridoxal-phosphate dependent TrpB-like enzyme; tryptophan synthase subunit beta 632116 10869048 Runsl_0533 Runella slithyformis DSM 19594 tryptophan synthase subunit beta YP_004654109.1 630746 D 761193 CDS YP_004654110.1 338210063 10869049 complement(632412..633512) 1 NC_015703.1 hypothetical protein 633512 10869049 Runsl_0534 Runella slithyformis DSM 19594 hypothetical protein YP_004654110.1 632412 R 761193 CDS YP_004654111.1 338210064 10869050 633590..633751 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 633751 10869050 Runsl_0535 Runella slithyformis DSM 19594 hypothetical protein YP_004654111.1 633590 D 761193 CDS YP_004654112.1 338210065 10869052 complement(635519..638923) 1 NC_015703.1 PFAM: Cytochrome c; HEAT repeat; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type; KEGG: dfe:Dfer_4959 hypothetical protein; SPTR: uncharacterized protein; heme-binding protein 638923 10869052 Runsl_0537 Runella slithyformis DSM 19594 heme-binding protein YP_004654112.1 635519 R 761193 CDS YP_004654113.1 338210066 10869053 639561..641492 1 NC_015703.1 PFAM: Heparinase II/III-like protein; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR006584:IPR003088:IPR005084; KEGG: sli:Slin_3440 PKD domain containing protein; PFAM: Carbohydrate binding domain, family 6; PKD; Cytochrome c, class I; SMART: PKD; Cellulose binding, type IV; SPTR: PKD domain containing protein; hypothetical protein 641492 10869053 Runsl_0538 Runella slithyformis DSM 19594 hypothetical protein YP_004654113.1 639561 D 761193 CDS YP_004654114.1 338210067 10869054 641732..644914 1 NC_015703.1 PFAM: Cytochrome c; Trehalose utilisation; Carbohydrate binding module (family 6); PKD domain; COGs: COG0001 Glutamate-1-semialdehyde aminotransferase; HAMAP: Glutamate-1-semialdehyde 2,1-aminomutase; InterPro IPR004639:IPR005814; KEGG: dfe:Dfer_1148 glutamate-1-semialdehyde aminotransferase; PFAM: Aminotransferase class-III; PRIAM: Glutamate-1-semialdehyde 2,1-aminomutase; SPTR: Glutamate-1-semialdehyde 2,1-aminomutase; TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; carbohydrate binding family protein 644914 10869054 Runsl_0539 Runella slithyformis DSM 19594 carbohydrate binding family protein YP_004654114.1 641732 D 761193 CDS YP_004654115.1 338210068 10869055 complement(645044..646333) 1 NC_015703.1 PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; KEGG: sli:Slin_2013 hypothetical protein; SPTR: uncharacterized protein; glutamate-1-semialdehyde 2,1-aminomutase 646333 10869055 Runsl_0540 Runella slithyformis DSM 19594 glutamate-1-semialdehyde 2,1-aminomutase YP_004654115.1 645044 R 761193 CDS YP_004654116.1 338210069 10869056 complement(646367..648052) 1 NC_015703.1 PFAM: Receptor family ligand binding region; COGs: COG1109 Phosphomannomutase; InterPro IPR005844:IPR005845; KEGG: dfe:Dfer_4939 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; SPTR: Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; hypothetical protein 648052 10869056 Runsl_0541 Runella slithyformis DSM 19594 hypothetical protein YP_004654116.1 646367 R 761193 CDS YP_004654117.1 338210070 10869057 complement(648314..650062) 1 NC_015703.1 PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro IPR003347; KEGG: dfe:Dfer_4653 transcription factor jumonji JmjC domain protein; SMART: Transcription factor jumonji/aspartyl beta-hydroxylase; SPTR: Transcription factor jumonji jmjC domain protein; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I 650062 10869057 Runsl_0542 Runella slithyformis DSM 19594 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_004654117.1 648314 R 761193 CDS YP_004654118.1 338210071 10869058 650482..651321 1 NC_015703.1 InterPro IPR010499; KEGG: dfe:Dfer_3911 transcription activator, effector binding; PFAM: Bacterial transcription activator, effector binding; SPTR: Transcription activator, effector binding; transcription factor jumonji jmjC domain-containing protein 651321 10869058 Runsl_0543 Runella slithyformis DSM 19594 transcription factor jumonji jmjC domain-containing protein YP_004654118.1 650482 D 761193 CDS YP_004654119.1 338210072 10869059 complement(651473..651925) 1 NC_015703.1 PFAM: Bacterial transcription activator, effector binding domain; COGs: COG2764 conserved hypothetical protein; InterPro IPR004360; KEGG: phe:Phep_1228 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; transcription activator effector binding protein 651925 10869059 Runsl_0544 Runella slithyformis DSM 19594 transcription activator effector binding protein YP_004654119.1 651473 R 761193 CDS YP_004654120.1 338210073 10869060 complement(651937..652365) 1 NC_015703.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; COGs: COG2378 transcriptional regulator protein; InterPro IPR001034:IPR013196; KEGG: sli:Slin_1289 hypothetical protein; SMART: HTH transcriptional regulator, DeoR N-terminal; SPTR: Helix-turn-helix type 11 domain protein; Glyoxalase/bleomycin resistance protein/dioxygenase 652365 10869060 Runsl_0545 Runella slithyformis DSM 19594 Glyoxalase/bleomycin resistance protein/dioxygenase YP_004654120.1 651937 R 761193 CDS YP_004654121.1 338210074 10869061 complement(652447..653445) 1 NC_015703.1 PFAM: HTH domain; KEGG: dfe:Dfer_0156 hypothetical protein; SPTR: uncharacterized protein; regulatory protein DeoR 653445 10869061 Runsl_0546 Runella slithyformis DSM 19594 regulatory protein DeoR YP_004654121.1 652447 R 761193 CDS YP_004654122.1 338210075 10869062 653507..653968 1 NC_015703.1 hypothetical protein 653968 10869062 Runsl_0547 Runella slithyformis DSM 19594 hypothetical protein YP_004654122.1 653507 D 761193 CDS YP_004654123.1 338210076 10869063 654115..654294 1 NC_015703.1 COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: bcj:BCAM2643 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; hypothetical protein 654294 10869063 Runsl_0548 Runella slithyformis DSM 19594 hypothetical protein YP_004654123.1 654115 D 761193 CDS YP_004654124.1 338210077 10869064 complement(654348..655670) 1 NC_015703.1 PFAM: Beta-lactamase; beta-lactamase 655670 10869064 Runsl_0549 Runella slithyformis DSM 19594 beta-lactamase YP_004654124.1 654348 R 761193 CDS YP_004654125.1 338210078 10869065 complement(655686..656219) 1 NC_015703.1 COGs: COG4938 conserved hypothetical protein; KEGG: tye:THEYE_A0523 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 656219 10869065 Runsl_0550 Runella slithyformis DSM 19594 hypothetical protein YP_004654125.1 655686 R 761193 CDS YP_004654126.1 338210079 10869066 complement(656222..657622) 1 NC_015703.1 KEGG: sli:Slin_5502 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 657622 10869066 Runsl_0551 Runella slithyformis DSM 19594 hypothetical protein YP_004654126.1 656222 R 761193 CDS YP_004654127.1 338210080 10869067 complement(657820..659133) 1 NC_015703.1 KEGG: dfe:Dfer_4482 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 659133 10869067 Runsl_0552 Runella slithyformis DSM 19594 hypothetical protein YP_004654127.1 657820 R 761193 CDS YP_004654128.1 338210081 10869068 complement(659236..659397) 1 NC_015703.1 COGs: COG4185 conserved hypothetical protein; KEGG: dfe:Dfer_4483 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 659397 10869068 Runsl_0553 Runella slithyformis DSM 19594 hypothetical protein YP_004654128.1 659236 R 761193 CDS YP_004654129.1 338210082 10869069 complement(659384..659968) 1 NC_015703.1 PFAM: Zeta toxin; hypothetical protein 659968 10869069 Runsl_0554 Runella slithyformis DSM 19594 hypothetical protein YP_004654129.1 659384 R 761193 CDS YP_004654130.1 338210083 10869070 complement(660046..660285) 1 NC_015703.1 COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764:IPR002772:IPR001466; KEGG: dfe:Dfer_2708 beta-lactamase; PFAM: Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal; Beta-lactamase-related; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Beta-lactamase; hypothetical protein 660285 10869070 Runsl_0555 Runella slithyformis DSM 19594 hypothetical protein YP_004654130.1 660046 R 761193 CDS YP_004654131.1 338210084 10869071 complement(660481..663543) 1 NC_015703.1 PFAM: Glycosyl hydrolase 3 C terminal domain; Glycosyl hydrolase 3 N terminal domain; Beta-lactamase; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466:IPR011659; KEGG: sli:Slin_1815 beta-lactamase; PFAM: Beta-lactamase-related; WD40-like Beta Propeller; SPTR: Beta-lactamase; beta-N-acetylhexosaminidase 663543 10869071 Runsl_0556 Runella slithyformis DSM 19594 beta-N-acetylhexosaminidase YP_004654131.1 660481 R 761193 CDS YP_004654132.1 338210085 10869072 663790..665850 1 NC_015703.1 PFAM: WD40-like Beta Propeller Repeat; Beta-lactamase; InterPro IPR012312; KEGG: lby:Lbys_2912 hypothetical protein; PFAM: Haemerythrin/HHE cation-binding motif; SPTR: uncharacterized protein; beta-lactamase 665850 10869072 Runsl_0557 Runella slithyformis DSM 19594 beta-lactamase YP_004654132.1 663790 D 761193 CDS YP_004654133.1 338210086 10869073 complement(665924..666616) 1 NC_015703.1 PFAM: Hemerythrin HHE cation binding domain; COGs: COG2055 Malate/L-lactate dehydrogenase; InterPro IPR003767; KEGG: sli:Slin_0235 malate/L-lactate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase; PRIAM: Malate dehydrogenase; SPTR: Malate/L-lactate dehydrogenase; hemerythrin HHE cation binding domain-containing protein 666616 10869073 Runsl_0558 Runella slithyformis DSM 19594 hemerythrin HHE cation binding domain-containing protein YP_004654133.1 665924 R 761193 CDS YP_004654134.1 338210087 10869074 complement(666742..667881) 1 NC_015703.1 PFAM: Malate/L-lactate dehydrogenase; COGs: COG3391 conserved hypothetical protein; InterPro IPR007312; KEGG: sli:Slin_6217 40-residue YVTN family beta-propeller repeat protein; PFAM: Phosphoesterase; SPTR: 40-residue YVTN family beta-propeller repeat protein; malate dehydrogenase 667881 10869074 Runsl_0559 Runella slithyformis DSM 19594 malate dehydrogenase YP_004654134.1 666742 R 761193 CDS YP_004654135.1 338210088 10869075 complement(667975..670470) 1 NC_015703.1 PFAM: Phosphoesterase; 3-carboxy-cis,cis-muconate lactonizing enzyme; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: gvi:glr0280 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: Glr0280 protein; phosphoesterase 670470 10869075 Runsl_0560 Runella slithyformis DSM 19594 phosphoesterase YP_004654135.1 667975 R 761193 CDS YP_004654136.1 338210089 10869076 670730..672757 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG3391 conserved hypothetical protein; InterPro IPR011964:IPR007312; KEGG: sli:Slin_3396 phosphoesterase; PFAM: Phosphoesterase; SPTR: Phosphoesterase; TIGRFAM: YVTN beta-propeller repeat; TonB-dependent receptor 672757 10869076 Runsl_0561 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004654136.1 670730 D 761193 CDS YP_004654137.1 338210090 10869077 672865..675618 1 NC_015703.1 PFAM: Phosphoesterase; TIGRFAM: 40-residue YVTN family beta-propeller repeat; COGs: COG0076 Glutamate decarboxylase and related PLP-dependent protein; InterPro IPR002129; KEGG: fjo:Fjoh_1514 pyridoxal-dependent decarboxylase; PFAM: Pyridoxal phosphate-dependent decarboxylase; PRIAM: Diaminobutyrate decarboxylase; SPTR: Pyridoxal-dependent decarboxylase; hypothetical protein 675618 10869077 Runsl_0562 Runella slithyformis DSM 19594 hypothetical protein YP_004654137.1 672865 D 761193 CDS YP_004654138.1 338210091 10869078 complement(675699..677096) 1 NC_015703.1 PFAM: Pyridoxal-dependent decarboxylase conserved domain; COGs: COG2334 homoserine kinase type II (protein kinase fold); InterPro IPR002575; KEGG: dfe:Dfer_0292 aminoglycoside phosphotransferase; PFAM: Aminoglycoside phosphotransferase; SPTR: Aminoglycoside phosphotransferase; diaminobutyrate decarboxylase 677096 10869078 Runsl_0563 Runella slithyformis DSM 19594 diaminobutyrate decarboxylase YP_004654138.1 675699 R 761193 CDS YP_004654139.1 338210092 10869079 677346..678332 1 NC_015703.1 PFAM: Phosphotransferase enzyme family; aminoglycoside phosphotransferase 678332 10869079 Runsl_0564 Runella slithyformis DSM 19594 aminoglycoside phosphotransferase YP_004654139.1 677346 D 761193 CDS YP_004654140.1 338210093 10869080 678608..678880 1 NC_015703.1 KEGG: sli:Slin_0430 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 678880 10869080 Runsl_0565 Runella slithyformis DSM 19594 hypothetical protein YP_004654140.1 678608 D 761193 CDS YP_004654141.1 338210094 10869081 complement(678794..679414) 1 NC_015703.1 PFAM: Late embryogenesis abundant protein; KEGG: sli:Slin_4662 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 679414 10869081 Runsl_0566 Runella slithyformis DSM 19594 hypothetical protein YP_004654141.1 678794 R 761193 CDS YP_004654142.1 338210095 10869082 complement(679654..680811) 1 NC_015703.1 PFAM: Protein of unknown function (DUF3179); InterPro IPR000326; KEGG: sli:Slin_4663 phosphoesterase PA-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: Phosphoesterase PA-phosphatase related protein; hypothetical protein 680811 10869082 Runsl_0567 Runella slithyformis DSM 19594 hypothetical protein YP_004654142.1 679654 R 761193 CDS YP_004654143.1 338210096 10869083 complement(681072..682622) 1 NC_015703.1 PFAM: PAP2 superfamily; KEGG: sli:Slin_4664 hypothetical protein; SPTR: uncharacterized protein; phosphoesterase PA-phosphatase-like protein 682622 10869083 Runsl_0568 Runella slithyformis DSM 19594 phosphoesterase PA-phosphatase-like protein YP_004654143.1 681072 R 761193 CDS YP_004654144.1 338210097 10869084 complement(682638..683552) 1 NC_015703.1 KEGG: sli:Slin_4666 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 683552 10869084 Runsl_0569 Runella slithyformis DSM 19594 hypothetical protein YP_004654144.1 682638 R 761193 CDS YP_004654145.1 338210098 10869085 complement(683605..684717) 1 NC_015703.1 KEGG: dfe:Dfer_0024 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 684717 10869085 Runsl_0570 Runella slithyformis DSM 19594 hypothetical protein YP_004654145.1 683605 R 761193 CDS YP_004654146.1 338210099 10869086 complement(685172..685744) 1 NC_015703.1 InterPro IPR019619; PFAM: Protein of unknown function DUF2490; hypothetical protein 685744 10869086 Runsl_0571 Runella slithyformis DSM 19594 hypothetical protein YP_004654146.1 685172 R 761193 CDS YP_004654147.1 338210100 10869087 complement(685844..686608) 1 NC_015703.1 PFAM: Protein of unknown function (DUF2490); COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dfe:Dfer_0253 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; hypothetical protein 686608 10869087 Runsl_0572 Runella slithyformis DSM 19594 hypothetical protein YP_004654147.1 685844 R 761193 CDS YP_004654148.1 338210101 10869088 686695..687846 1 NC_015703.1 PFAM: Glycosyl transferases group 1; KEGG: dfe:Dfer_3713 hypothetical protein; SPTR: uncharacterized protein; group 1 glycosyl transferase 687846 10869088 Runsl_0573 Runella slithyformis DSM 19594 group 1 glycosyl transferase YP_004654148.1 686695 D 761193 CDS YP_004654149.1 338210102 10869089 complement(687894..688403) 1 NC_015703.1 KEGG: lby:Lbys_1640 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 688403 10869089 Runsl_0574 Runella slithyformis DSM 19594 hypothetical protein YP_004654149.1 687894 R 761193 CDS YP_004654150.1 338210103 10869090 complement(688415..689065) 1 NC_015703.1 hypothetical protein 689065 10869090 Runsl_0575 Runella slithyformis DSM 19594 hypothetical protein YP_004654150.1 688415 R 761193 CDS YP_004654151.1 338210104 10869091 complement(689056..690393) 1 NC_015703.1 hypothetical protein 690393 10869091 Runsl_0576 Runella slithyformis DSM 19594 hypothetical protein YP_004654151.1 689056 R 761193 CDS YP_004654152.1 338210105 10869092 complement(690399..690641) 1 NC_015703.1 hypothetical protein 690641 10869092 Runsl_0577 Runella slithyformis DSM 19594 hypothetical protein YP_004654152.1 690399 R 761193 CDS YP_004654153.1 338210106 10869093 complement(690638..690865) 1 NC_015703.1 KEGG: lby:Lbys_1639 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 690865 10869093 Runsl_0578 Runella slithyformis DSM 19594 hypothetical protein YP_004654153.1 690638 R 761193 CDS YP_004654154.1 338210107 10869094 complement(690899..691573) 1 NC_015703.1 hypothetical protein 691573 10869094 Runsl_0579 Runella slithyformis DSM 19594 hypothetical protein YP_004654154.1 690899 R 761193 CDS YP_004654155.1 338210108 10869095 complement(691716..692393) 1 NC_015703.1 hypothetical protein 692393 10869095 Runsl_0580 Runella slithyformis DSM 19594 hypothetical protein YP_004654155.1 691716 R 761193 CDS YP_004654156.1 338210109 10869096 complement(692421..692867) 1 NC_015703.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: lby:Lbys_1637 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; hypothetical protein 692867 10869096 Runsl_0581 Runella slithyformis DSM 19594 hypothetical protein YP_004654156.1 692421 R 761193 CDS YP_004654157.1 338210110 10869097 complement(692914..694332) 1 NC_015703.1 PFAM: OmpA family; OmpA/MotB domain-containing protein 694332 10869097 Runsl_0582 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004654157.1 692914 R 761193 CDS YP_004654158.1 338210111 10869098 694351..694575 1 NC_015703.1 COGs: COG2972 signal transduction protein with a C-terminal ATPase domain; InterPro IPR010559; KEGG: dfe:Dfer_1280 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; hypothetical protein 694575 10869098 Runsl_0583 Runella slithyformis DSM 19594 hypothetical protein YP_004654158.1 694351 D 761193 CDS YP_004654159.1 338210112 10869099 694602..696596 1 NC_015703.1 PFAM: Histidine kinase; 7TM diverse intracellular signalling; 7TMR-DISM extracellular 2; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_1279 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; histidine kinase internal region 696596 10869099 Runsl_0584 Runella slithyformis DSM 19594 histidine kinase internal region YP_004654159.1 694602 D 761193 CDS YP_004654160.1 338210113 10869100 696600..697355 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: dfe:Dfer_4778 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; LytTR family two component transcriptional regulator 697355 10869100 Runsl_0585 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004654160.1 696600 D 761193 CDS YP_004654161.1 338210114 10869101 complement(697358..697918) 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); COGs: COG0519 GMP synthase PP-ATPase domain/subunit; HAMAP: GMP synthase [glutamine-hydrolyzing]; InterPro IPR004739:IPR001674:IPR000991:IPR018318; KEGG: dfe:Dfer_2697 GMP synthase; PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; tRNA methyl transferase-like; PRIAM: GMP synthase (glutamine-hydrolyzing); SPTR: GMP synthase [glutamine-hydrolyzing]; TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; hypothetical protein 697918 10869101 Runsl_0586 Runella slithyformis DSM 19594 hypothetical protein YP_004654161.1 697358 R 761193 CDS YP_004654162.1 338210115 10869102 698012..699538 1 NC_015703.1 PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit; KEGG: sli:Slin_0996 hypothetical protein; SPTR: uncharacterized protein; GMP synthase 699538 10869102 Runsl_0587 Runella slithyformis DSM 19594 GMP synthase YP_004654162.1 698012 D 761193 CDS YP_004654163.1 338210116 10869103 699622..701040 1 NC_015703.1 COGs: COG1760 L-serine deaminase; InterPro IPR004644:IPR005131:IPR005130; KEGG: lby:Lbys_1842 L-serine ammonia-lyase; PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain; SPTR: L-serine ammonia-lyase; TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form; hypothetical protein 701040 10869103 Runsl_0588 Runella slithyformis DSM 19594 hypothetical protein YP_004654163.1 699622 D 761193 CDS YP_004654164.1 338210117 10869104 complement(701082..702464) 1 NC_015703.1 PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, single chain form; KEGG: rrs:RoseRS_0445 hypothetical protein; SPTR: uncharacterized protein; L-serine dehydratase 1 702464 10869104 Runsl_0589 Runella slithyformis DSM 19594 L-serine dehydratase 1 YP_004654164.1 701082 R 761193 CDS YP_004654165.1 338210118 10869105 complement(702590..703039) 1 NC_015703.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: cbb:CLD_3508 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: transcriptional regulator; hypothetical protein 703039 10869105 Runsl_0590 Runella slithyformis DSM 19594 hypothetical protein YP_004654165.1 702590 R 761193 CDS YP_004654166.1 338210119 10869106 complement(703083..704075) 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC family transcriptional regulator 704075 10869106 Runsl_0591 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004654166.1 703083 R 761193 CDS YP_004654167.1 338210120 10869107 complement(704330..705277) 1 NC_015703.1 COGs: COG0004 Ammonia permease; InterPro IPR001905; KEGG: sli:Slin_1347 ammonium transporter; PFAM: Ammonium transporter; SPTR: Ammonium transporter; TIGRFAM: Ammonium transporter; hypothetical protein 705277 10869107 Runsl_0592 Runella slithyformis DSM 19594 hypothetical protein YP_004654167.1 704330 R 761193 CDS YP_004654168.1 338210121 10869108 complement(706190..707512) 1 NC_015703.1 PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter; KEGG: dfe:Dfer_0442 outer membrane protein; SPTR: Outer membrane protein; ammonium transporter 707512 10869108 Runsl_0593 Runella slithyformis DSM 19594 ammonium transporter YP_004654168.1 706190 R 761193 CDS YP_004654169.1 338210122 10869109 complement(707627..708979) 1 NC_015703.1 InterPro IPR001450; KEGG: sli:Slin_1345 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; hypothetical protein 708979 10869109 Runsl_0594 Runella slithyformis DSM 19594 hypothetical protein YP_004654169.1 707627 R 761193 CDS YP_004654170.1 338210123 10869110 complement(709282..709683) 1 NC_015703.1 KEGG: dfe:Dfer_0440 acyl-CoA reductase; SPTR: Acyl-CoA reductase; 4Fe-4S ferredoxin 709683 10869110 Runsl_0595 Runella slithyformis DSM 19594 4Fe-4S ferredoxin YP_004654170.1 709282 R 761193 CDS YP_004654171.1 338210124 10869111 709763..710785 1 NC_015703.1 PFAM: Acyl-CoA reductase (LuxC); COGs: COG2170 conserved hypothetical protein; HAMAP: Carboxylate-amine ligase ybdK; InterPro IPR011793:IPR006336; KEGG: sli:Slin_1316 glutamate--cysteine ligase; PFAM: Glutamate--cysteine ligase, GCS2; SPTR: Carboxylate-amine ligase Slin_1316; TIGRFAM: Carboxylate-amine ligase, predicted; acyl-CoA reductase 710785 10869111 Runsl_0596 Runella slithyformis DSM 19594 acyl-CoA reductase YP_004654171.1 709763 D 761193 CDS YP_004654172.1 338210125 10869112 complement(710860..711957) 1 NC_015703.1 PFAM: Glutamate-cysteine ligase 2(GCS2); TIGRFAM: carboxylate-amine ligase, YbdK family; COGs: COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); KEGG: lby:Lbys_1134 glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase)-like protein; SPTR: Glutathione synthase/ribosomal protein S6 modification enzyme (Glutaminyl transferase)-like protein; carboxylate-amine ligase ybdK 711957 10869112 Runsl_0597 Runella slithyformis DSM 19594 carboxylate-amine ligase ybdK YP_004654172.1 710860 R 761193 CDS YP_004654173.1 338210126 10869113 complement(712026..713090) 1 NC_015703.1 COGs: COG4947 conserved hypothetical protein; InterPro IPR000801; KEGG: dfe:Dfer_0438 esterase; PFAM: esterase; SPTR: esterase; glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase)-like protein 713090 10869113 Runsl_0598 Runella slithyformis DSM 19594 glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase)-like protein YP_004654173.1 712026 R 761193 CDS YP_004654174.1 338210127 10869114 complement(713203..713913) 1 NC_015703.1 PFAM: esterase; COGs: COG0854 Pyridoxal phosphate biosynthesis protein; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; InterPro IPR004569; KEGG: dfe:Dfer_4728 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; PRIAM: Pyridoxine 5'-phosphate synthase; SPTR: Pyridoxine 5'-phosphate synthase; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; esterase 713913 10869114 Runsl_0599 Runella slithyformis DSM 19594 esterase YP_004654174.1 713203 R 761193 CDS YP_004654175.1 338210128 10869115 714133..714849 1 NC_015703.1 PFAM: Pyridoxal phosphate biosynthesis protein PdxJ; TIGRFAM: pyridoxine 5'-phosphate synthase; COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006056:IPR006175; KEGG: sli:Slin_4890 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: uncharacterized protein; TIGRFAM: YjgF-like protein; pyridoxine 5'-phosphate synthase 714849 10869115 Runsl_0600 Runella slithyformis DSM 19594 pyridoxine 5'-phosphate synthase YP_004654175.1 714133 D 761193 CDS YP_004654176.1 338210129 10869116 714914..715297 1 NC_015703.1 PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR002155; KEGG: sli:Slin_5109 acetyl-CoA acetyltransferase; PRIAM: Acetyl-CoA C-acyltransferase; SPTR: Acetyl-CoA acetyltransferase; TIGRFAM: Thiolase; endoribonuclease L-PSP 715297 10869116 Runsl_0601 Runella slithyformis DSM 19594 endoribonuclease L-PSP YP_004654176.1 714914 D 761193 CDS YP_004654177.1 338210130 10869117 complement(715366..716544) 1 NC_015703.1 PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; KEGG: mtt:Ftrac_3437 hypothetical protein; SPTR: uncharacterized protein; acetyl-CoA acetyltransferase 716544 10869117 Runsl_0602 Runella slithyformis DSM 19594 acetyl-CoA acetyltransferase YP_004654177.1 715366 R 761193 CDS YP_004654178.1 338210131 10869118 716828..721759 1 NC_015703.1 COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: cbg:CbuG_1385 acyltransferase; PFAM: Acyltransferase 3; SPTR: Acyltransferase; hypothetical protein 721759 10869118 Runsl_0603 Runella slithyformis DSM 19594 hypothetical protein YP_004654178.1 716828 D 761193 CDS YP_004654179.1 338210132 10869119 complement(721810..722853) 1 NC_015703.1 PFAM: Acyltransferase; KEGG: chu:CHU_1634 hypothetical protein; SPTR: uncharacterized protein; acyltransferase 722853 10869119 Runsl_0604 Runella slithyformis DSM 19594 acyltransferase YP_004654179.1 721810 R 761193 CDS YP_004654180.1 338210133 10869120 complement(722850..724595) 1 NC_015703.1 COGs: COG4947 conserved hypothetical protein; KEGG: dfe:Dfer_4768 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 724595 10869120 Runsl_0605 Runella slithyformis DSM 19594 hypothetical protein YP_004654180.1 722850 R 761193 CDS YP_004654181.1 338210134 10869121 complement(724695..725426) 1 NC_015703.1 PFAM: esterase; COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: dfe:Dfer_3406 Na+/solute symporter; PFAM: Sodium/solute symporter; SPTR: Na+/solute symporter; hypothetical protein 725426 10869121 Runsl_0606 Runella slithyformis DSM 19594 hypothetical protein YP_004654181.1 724695 R 761193 CDS YP_004654182.1 338210135 10869122 725562..726941 1 NC_015703.1 PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: dfe:Dfer_3873 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; Na+/solute symporter 726941 10869122 Runsl_0607 Runella slithyformis DSM 19594 Na+/solute symporter YP_004654182.1 725562 D 761193 CDS YP_004654183.1 338210136 10869123 complement(726923..727348) 1 NC_015703.1 PFAM: NUDIX domain; COGs: COG1512 Beta-propeller domains of methanol dehydrogenase type; InterPro IPR007621; KEGG: sli:Slin_5849 hypothetical protein; PFAM: Protein of unknown function DUF477; SPTR: uncharacterized protein; NUDIX hydrolase 727348 10869123 Runsl_0608 Runella slithyformis DSM 19594 NUDIX hydrolase YP_004654183.1 726923 R 761193 CDS YP_004654184.1 338210137 10869124 complement(727489..728256) 1 NC_015703.1 PFAM: Domain of unknown function (DUF477); COGs: COG3762 membrane protein; InterPro IPR007621; KEGG: sli:Slin_5848 hypothetical protein; PFAM: Protein of unknown function DUF477; SPTR: uncharacterized protein; hypothetical protein 728256 10869124 Runsl_0609 Runella slithyformis DSM 19594 hypothetical protein YP_004654184.1 727489 R 761193 CDS YP_004654185.1 338210138 10869125 complement(728333..728767) 1 NC_015703.1 PFAM: Domain of unknown function (DUF477); COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: sli:Slin_5847 LemA family protein; PFAM: LemA; SPTR: LemA family protein; hypothetical protein 728767 10869125 Runsl_0610 Runella slithyformis DSM 19594 hypothetical protein YP_004654185.1 728333 R 761193 CDS YP_004654186.1 338210139 10869126 complement(728840..729421) 1 NC_015703.1 PFAM: LemA family; InterPro IPR004993; KEGG: dfe:Dfer_3419 GH3 auxin-responsive promoter; PFAM: GH3 auxin-responsive promoter; SPTR: GH3 auxin-responsive promoter; LemA family protein 729421 10869126 Runsl_0611 Runella slithyformis DSM 19594 LemA family protein YP_004654186.1 728840 R 761193 CDS YP_004654187.1 338210140 10869127 complement(729717..731213) 1 NC_015703.1 PFAM: GH3 auxin-responsive promoter; COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129; KEGG: sli:Slin_5652 glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase; SPTR: Glycerophosphoryl diester phosphodiesterase; GH3 auxin-responsive promoter 731213 10869127 Runsl_0612 Runella slithyformis DSM 19594 GH3 auxin-responsive promoter YP_004654187.1 729717 R 761193 CDS YP_004654188.1 338210141 10869128 complement(731336..732181) 1 NC_015703.1 PFAM: Glycerophosphoryl diester phosphodiesterase; COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891; KEGG: sli:Slin_5897 pyruvate carboxyltransferase; PFAM: Pyruvate carboxyltransferase; PRIAM: 2-isopropylmalate synthase; SPTR: Pyruvate carboxyltransferase; glycerophosphoryl diester phosphodiesterase 732181 10869128 Runsl_0613 Runella slithyformis DSM 19594 glycerophosphoryl diester phosphodiesterase YP_004654188.1 731336 R 761193 CDS YP_004654189.1 338210142 10869129 732605..733759 1 NC_015703.1 PFAM: HMGL-like; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR000172:IPR007867; KEGG: sli:Slin_5650 choline dehydrogenase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal; PRIAM: Choline dehydrogenase; SPTR: Choline dehydrogenase; 2-isopropylmalate synthase 733759 10869129 Runsl_0614 Runella slithyformis DSM 19594 2-isopropylmalate synthase YP_004654189.1 732605 D 761193 CDS YP_004654190.1 338210143 10869130 complement(733875..735518) 1 NC_015703.1 PFAM: GMC oxidoreductase; choline dehydrogenase 735518 10869130 Runsl_0615 Runella slithyformis DSM 19594 choline dehydrogenase YP_004654190.1 733875 R 761193 CDS YP_004654191.1 338210144 10869131 complement(735648..736319) 1 NC_015703.1 hypothetical protein 736319 10869131 Runsl_0616 Runella slithyformis DSM 19594 hypothetical protein YP_004654191.1 735648 R 761193 CDS YP_004654192.1 338210145 10869132 complement(736341..737003) 1 NC_015703.1 COGs: COG1725 transcriptional regulator protein; InterPro IPR000524; KEGG: phe:Phep_3352 regulatory protein GntR; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; SPTR: Regulatory protein GntR HTH; hypothetical protein 737003 10869132 Runsl_0617 Runella slithyformis DSM 19594 hypothetical protein YP_004654192.1 736341 R 761193 CDS YP_004654193.1 338210146 10869133 complement(737021..737383) 1 NC_015703.1 PFAM: Bacterial regulatory proteins, gntR family; KEGG: cpi:Cpin_7290 hypothetical protein; SPTR: uncharacterized protein; GntR family transcriptional regulator 737383 10869133 Runsl_0618 Runella slithyformis DSM 19594 GntR family transcriptional regulator YP_004654193.1 737021 R 761193 CDS YP_004654194.1 338210147 10869134 complement(737389..738201) 1 NC_015703.1 KEGG: cpi:Cpin_7290 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 738201 10869134 Runsl_0619 Runella slithyformis DSM 19594 hypothetical protein YP_004654194.1 737389 R 761193 CDS YP_004654195.1 338210148 10869135 complement(738207..739022) 1 NC_015703.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: cpi:Cpin_7291 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; hypothetical protein 739022 10869135 Runsl_0620 Runella slithyformis DSM 19594 hypothetical protein YP_004654195.1 738207 R 761193 CDS YP_004654196.1 338210149 10869136 complement(739028..739729) 1 NC_015703.1 PFAM: ABC transporter; KEGG: sli:Slin_5041 hypothetical protein; SPTR: uncharacterized protein; ABC transporter 739729 10869136 Runsl_0621 Runella slithyformis DSM 19594 ABC transporter YP_004654196.1 739028 R 761193 CDS YP_004654197.1 338210150 10869137 739948..740565 1 NC_015703.1 COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR013520:IPR006055; KEGG: dfe:Dfer_3900 DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; SPTR: DNA polymerase III, epsilon subunit; hypothetical protein 740565 10869137 Runsl_0622 Runella slithyformis DSM 19594 hypothetical protein YP_004654197.1 739948 D 761193 CDS YP_004654198.1 338210151 10869138 740599..741414 1 NC_015703.1 PFAM: Exonuclease; KEGG: sli:Slin_0793 hypothetical protein; SPTR: uncharacterized protein; Exonuclease RNase T and DNA polymerase III 741414 10869138 Runsl_0623 Runella slithyformis DSM 19594 Exonuclease RNase T and DNA polymerase III YP_004654198.1 740599 D 761193 CDS YP_004654199.1 338210152 10869139 complement(741493..742755) 1 NC_015703.1 COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: dfe:Dfer_5607 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein 742755 10869139 Runsl_0624 Runella slithyformis DSM 19594 hypothetical protein YP_004654199.1 741493 R 761193 CDS YP_004654200.1 338210153 10869140 742915..744159 1 NC_015703.1 PFAM: Predicted permease; hypothetical protein 744159 10869140 Runsl_0625 Runella slithyformis DSM 19594 hypothetical protein YP_004654200.1 742915 D 761193 CDS YP_004654201.1 338210154 10869142 744834..745181 1 NC_015703.1 InterPro IPR013427; KEGG: sli:Slin_0965 heme-binding protein; SPTR: Heme-binding protein; TIGRFAM: haem-binding region; hypothetical protein 745181 10869142 Runsl_0626 Runella slithyformis DSM 19594 hypothetical protein YP_004654201.1 744834 D 761193 CDS YP_004654202.1 338210155 10869143 complement(745260..747941) 1 NC_015703.1 PFAM: Cytochrome c; TIGRFAM: heme-binding domain, Pirellula/Verrucomicrobium type; InterPro IPR012944; KEGG: sli:Slin_0963 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; heme-binding protein 747941 10869143 Runsl_0627 Runella slithyformis DSM 19594 heme-binding protein YP_004654202.1 745260 R 761193 CDS YP_004654203.1 338210156 10869144 complement(748117..749625) 1 NC_015703.1 PFAM: SusD family; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: sli:Slin_0962 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; RagB/SusD domain-containing protein 749625 10869144 Runsl_0628 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004654203.1 748117 R 761193 CDS YP_004654204.1 338210157 10869145 complement(749724..752822) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG1879 ABC-type sugar transport system periplasmic component; InterPro IPR001761; KEGG: sli:Slin_1047 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SPTR: Periplasmic binding protein/LacI transcriptional regulator; TonB-dependent receptor plug 752822 10869145 Runsl_0629 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004654204.1 749724 R 761193 CDS YP_004654205.1 338210158 10869146 complement(753121..754050) 1 NC_015703.1 PFAM: family; COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: sli:Slin_1048 inner-membrane translocator; PFAM: Bacterial inner-membrane translocator; SPTR: Inner-membrane translocator; periplasmic binding protein/LacI transcriptional regulator 754050 10869146 Runsl_0630 Runella slithyformis DSM 19594 periplasmic binding protein/LacI transcriptional regulator YP_004654205.1 753121 R 761193 CDS YP_004654206.1 338210159 10869147 complement(754172..755125) 1 NC_015703.1 PFAM: Branched-chain amino acid transport system / permease component; COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: sli:Slin_1049 ABC transporter; PFAM: ABC transporter-like; PRIAM: Monosaccharide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; ABC transporter permease 755125 10869147 Runsl_0631 Runella slithyformis DSM 19594 ABC transporter permease YP_004654206.1 754172 R 761193 CDS YP_004654207.1 338210160 10869148 complement(755274..756773) 1 NC_015703.1 PFAM: ABC transporter; KEGG: sli:Slin_4611 hypothetical protein; SPTR: uncharacterized protein; monosaccharide-transporting ATPase 756773 10869148 Runsl_0632 Runella slithyformis DSM 19594 monosaccharide-transporting ATPase YP_004654207.1 755274 R 761193 CDS YP_004654208.1 338210161 10869149 756988..759261 1 NC_015703.1 InterPro IPR002934; KEGG: ppn:Palpr_2605 DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase; SPTR: DNA polymerase beta domain protein region; manually curated; hypothetical protein 759261 10869149 Runsl_0633 Runella slithyformis DSM 19594 hypothetical protein YP_004654208.1 756988 D 761193 CDS YP_004654209.1 338210162 10869150 759409..759729 1 NC_015703.1 PFAM: Nucleotidyltransferase domain; COGs: COG1895 conserved hypothetical protein related to C-terminal domain of eukaryotic chaperone SACSIN; InterPro IPR007842; KEGG: tna:CTN_1578 hypothetical protein; PFAM: HEPN; SPTR: Toxin-antitoxin system antitoxin component; DNA polymerase beta domain-containing protein 759729 10869150 Runsl_0634 Runella slithyformis DSM 19594 DNA polymerase beta domain-containing protein YP_004654209.1 759409 D 761193 CDS YP_004654210.1 338210163 10869151 759726..760112 1 NC_015703.1 PFAM: HEPN domain; COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: dfe:Dfer_2465 hypothetical protein; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; HEPN domain-containing protein 760112 10869151 Runsl_0635 Runella slithyformis DSM 19594 HEPN domain-containing protein YP_004654210.1 759726 D 761193 CDS YP_004654211.1 338210164 10869152 complement(760247..761374) 1 NC_015703.1 PFAM: Archaeal ATPase; ATPase AAA 761374 10869152 Runsl_0636 Runella slithyformis DSM 19594 ATPase AAA YP_004654211.1 760247 R 761193 CDS YP_004654212.1 338210165 10869153 complement(761719..761973) 1 NC_015703.1 hypothetical protein 761973 10869153 Runsl_0637 Runella slithyformis DSM 19594 hypothetical protein YP_004654212.1 761719 R 761193 CDS YP_004654213.1 338210166 10869154 complement(761957..762811) 1 NC_015703.1 KEGG: ami:Amir_5397 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 762811 10869154 Runsl_0638 Runella slithyformis DSM 19594 hypothetical protein YP_004654213.1 761957 R 761193 CDS YP_004654214.1 338210167 10869155 complement(762880..765681) 1 NC_015703.1 PFAM: NACHT domain; COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated; hypothetical protein 765681 10869155 Runsl_0639 Runella slithyformis DSM 19594 hypothetical protein YP_004654214.1 762880 R 761193 CDS YP_004654215.1 338210168 10869156 join(765863..766327,766329..766874) 1 NC_015703.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; transposase 766874 10869156 Runsl_0640 Runella slithyformis DSM 19594 transposase YP_004654215.1 765863 D 761193 CDS YP_004654216.1 338210169 10869157 complement(766833..767420) 1 NC_015703.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: sli:Slin_0970 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; hypothetical protein 767420 10869157 Runsl_0641 Runella slithyformis DSM 19594 hypothetical protein YP_004654216.1 766833 R 761193 CDS YP_004654217.1 338210170 10869158 complement(767654..768814) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; InterPro IPR012307; KEGG: sli:Slin_0969 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; oxidoreductase domain-containing protein 768814 10869158 Runsl_0642 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004654217.1 767654 R 761193 CDS YP_004654218.1 338210171 10869159 complement(768909..769943) 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: dfe:Dfer_3169 hypothetical protein; SPTR: uncharacterized protein; xylose isomerase domain-containing protein 769943 10869159 Runsl_0643 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004654218.1 768909 R 761193 CDS YP_004654219.1 338210172 10869160 complement(770081..771304) 1 NC_015703.1 KEGG: sli:Slin_0967 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 771304 10869160 Runsl_0644 Runella slithyformis DSM 19594 hypothetical protein YP_004654219.1 770081 R 761193 CDS YP_004654220.1 338210173 10869161 complement(771697..772719) 1 NC_015703.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dfe:Dfer_3171 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; hypothetical protein 772719 10869161 Runsl_0645 Runella slithyformis DSM 19594 hypothetical protein YP_004654220.1 771697 R 761193 CDS YP_004654221.1 338210174 10869162 complement(772842..773651) 1 NC_015703.1 PFAM: alpha/beta hydrolase fold; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: dfe:Dfer_3172 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; alpha/beta hydrolase 773651 10869162 Runsl_0646 Runella slithyformis DSM 19594 alpha/beta hydrolase YP_004654221.1 772842 R 761193 CDS YP_004654222.1 338210175 10869163 complement(773755..774582) 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: dfe:Dfer_3173 signal peptide; SPTR: Signal peptide; xylose isomerase domain-containing protein 774582 10869163 Runsl_0647 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004654222.1 773755 R 761193 CDS YP_004654223.1 338210176 10869164 complement(774624..775685) 1 NC_015703.1 PFAM: Trehalose utilisation; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: dfe:Dfer_3174 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; hypothetical protein 775685 10869164 Runsl_0648 Runella slithyformis DSM 19594 hypothetical protein YP_004654223.1 774624 R 761193 CDS YP_004654224.1 338210177 10869165 complement(775723..776574) 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; InterPro IPR010496; KEGG: sli:Slin_0966 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; xylose isomerase domain-containing protein 776574 10869165 Runsl_0649 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004654224.1 775723 R 761193 CDS YP_004654225.1 338210178 10869166 complement(776581..777375) 1 NC_015703.1 PFAM: Domain of Unknown Function (DUF1080); hypothetical protein 777375 10869166 Runsl_0650 Runella slithyformis DSM 19594 hypothetical protein YP_004654225.1 776581 R 761193 CDS YP_004654226.1 338210179 10869167 777527..777769 1 NC_015703.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594:IPR001789; KEGG: dfe:Dfer_2525 PAS/PAC sensor hybrid histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase; hypothetical protein 777769 10869167 Runsl_0651 Runella slithyformis DSM 19594 hypothetical protein YP_004654226.1 777527 D 761193 CDS YP_004654227.1 338210180 10869168 complement(777757..779292) 1 NC_015703.1 PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG3287 conserved hypothetical protein; InterPro IPR013702:IPR019494; KEGG: sli:Slin_0140 FIST C domain protein; PFAM: FIST C domain; FIST domain, N-terminal; SPTR: FIST C domain protein; histidine kinase 779292 10869168 Runsl_0652 Runella slithyformis DSM 19594 histidine kinase YP_004654227.1 777757 R 761193 CDS YP_004654228.1 338210181 10869169 complement(779289..780428) 1 NC_015703.1 PFAM: FIST C domain; FIST N domain; COGs: COG0384 epimerase PhzC/PhzF homolog; InterPro IPR003719; KEGG: dfe:Dfer_2672 phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; SPTR: Phenazine biosynthesis protein PhzF family; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; FIST C domain-containing protein 780428 10869169 Runsl_0653 Runella slithyformis DSM 19594 FIST C domain-containing protein YP_004654228.1 779289 R 761193 CDS YP_004654229.1 338210182 10869170 complement(780713..781504) 1 NC_015703.1 PFAM: Phenazine biosynthesis-like protein; TIGRFAM: phenazine biosynthesis protein PhzF family; KEGG: sli:Slin_4487 thioredoxin; SPTR: Thioredoxin-related protein-like protein; phenazine biosynthesis protein PhzF family protein 781504 10869170 Runsl_0654 Runella slithyformis DSM 19594 phenazine biosynthesis protein PhzF family protein YP_004654229.1 780713 R 761193 CDS YP_004654230.1 338210183 10869171 complement(781708..782232) 1 NC_015703.1 PFAM: Protein of unknown function, DUF255; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: sli:Slin_0411 carbohydrate kinase, FGGY-like protein; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; PRIAM: Gluconokinase; SPTR: Carbohydrate kinase, FGGY-like protein; thioredoxin 782232 10869171 Runsl_0655 Runella slithyformis DSM 19594 thioredoxin YP_004654230.1 781708 R 761193 CDS YP_004654231.1 338210184 10869172 complement(782350..783816) 1 NC_015703.1 PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: gluconate kinase, FGGY type; COGs: COG1522 Transcriptional regulators; InterPro IPR019887:IPR019888; KEGG: fjo:Fjoh_4658 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type; SPTR: Regulatory protein AsnC; gluconokinase 783816 10869172 Runsl_0656 Runella slithyformis DSM 19594 gluconokinase YP_004654231.1 782350 R 761193 CDS YP_004654232.1 338210185 10869173 complement(783835..784296) 1 NC_015703.1 PFAM: AsnC family; KEGG: dfe:Dfer_3925 conserved hypothetical protein, membrane or secreted; SPTR: uncharacterized protein; AsnC family transcriptional regulator 784296 10869173 Runsl_0657 Runella slithyformis DSM 19594 AsnC family transcriptional regulator YP_004654232.1 783835 R 761193 CDS YP_004654233.1 338210186 10869174 complement(784382..786955) 1 NC_015703.1 COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814:IPR010164; KEGG: sur:STAUR_1193 ornithine-oxo-acid transaminase; PFAM: Aminotransferase class-III; PRIAM: Ornithine aminotransferase; SPTR: Ornithine-oxo-acid transaminase; TIGRFAM: Ornithine aminotransferase; hypothetical protein 786955 10869174 Runsl_0658 Runella slithyformis DSM 19594 hypothetical protein YP_004654233.1 784382 R 761193 CDS YP_004654234.1 338210187 10869175 787177..788412 1 NC_015703.1 PFAM: Aminotransferase class-III; TIGRFAM: ornithine aminotransferase; COGs: COG0415 Deoxyribodipyrimidine photolyase; InterPro IPR006050:IPR005101:IPR014133; KEGG: sli:Slin_6186 cryptochrome, DASH family; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal; SPTR: Cryptochrome, DASH family; TIGRFAM: Cryptochrome, DASH; ornithine aminotransferase 788412 10869175 Runsl_0659 Runella slithyformis DSM 19594 ornithine aminotransferase YP_004654234.1 787177 D 761193 CDS YP_004654235.1 338210188 10869176 complement(788482..789921) 1 NC_015703.1 PFAM: FAD binding domain of DNA photolyase; DNA photolyase; TIGRFAM: cryptochrome, DASH family; InterPro IPR004360; KEGG: chu:CHU_2533 lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Lactoylglutathione lyase; DASH family cryptochrome 789921 10869176 Runsl_0660 Runella slithyformis DSM 19594 DASH family cryptochrome YP_004654235.1 788482 R 761193 CDS YP_004654236.1 338210189 10869177 790196..790585 1 NC_015703.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG0218 GTPase; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; InterPro IPR019987:IPR002917; KEGG: osp:Odosp_1339 GTP-binding protein EngB; PFAM: GTP-binding protein, HSR1-related; SPTR: GTP-binding protein; TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; Glyoxalase/bleomycin resistance protein/dioxygenase 790585 10869177 Runsl_0661 Runella slithyformis DSM 19594 Glyoxalase/bleomycin resistance protein/dioxygenase YP_004654236.1 790196 D 761193 CDS YP_004654237.1 338210190 10869178 790620..791219 1 NC_015703.1 PFAM: GTPase of unknown function; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC/EngB; COGs: COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); InterPro IPR011611:IPR017583; KEGG: dfe:Dfer_4571 1-phosphofructokinase; PFAM: Carbohydrate/purine kinase; PRIAM: 6-phosphofructokinase; SPTR: 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; GTP-binding protein engB 791219 10869178 Runsl_0662 Runella slithyformis DSM 19594 GTP-binding protein engB YP_004654237.1 790620 D 761193 CDS YP_004654238.1 338210191 10869179 791216..792145 1 NC_015703.1 PFAM: pfkB family carbohydrate kinase; TIGRFAM: hexose kinase, 1-phosphofructokinase; COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); InterPro IPR001450; KEGG: dfe:Dfer_4037 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; 1-phosphofructokinase 792145 10869179 Runsl_0663 Runella slithyformis DSM 19594 1-phosphofructokinase YP_004654238.1 791216 D 761193 CDS YP_004654239.1 338210192 10869180 792204..793613 1 NC_015703.1 KEGG: ldb:Ldb1963 hypothetical protein; SPTR: uncharacterized protein; 4Fe-4S ferredoxin 793613 10869180 Runsl_0664 Runella slithyformis DSM 19594 4Fe-4S ferredoxin YP_004654239.1 792204 D 761193 CDS YP_004654240.1 338210193 10869181 complement(793614..794120) 1 NC_015703.1 COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: sli:Slin_0514 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: tRNA/rRNA methyltransferase (SpoU); hypothetical protein 794120 10869181 Runsl_0665 Runella slithyformis DSM 19594 hypothetical protein YP_004654240.1 793614 R 761193 CDS YP_004654241.1 338210194 10869182 complement(794214..794756) 1 NC_015703.1 PFAM: SpoU rRNA Methylase; COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: sli:Slin_3480 peptidase M16 domain protein; PFAM: Peptidase M16, N-terminal; Peptidase M16, C-terminal; PRIAM: processing peptidase; SPTR: Peptidase M16 domain protein; tRNA/rRNA methyltransferase SpoU 794756 10869182 Runsl_0666 Runella slithyformis DSM 19594 tRNA/rRNA methyltransferase SpoU YP_004654241.1 794214 R 761193 CDS YP_004654242.1 338210195 10869183 794873..796111 1 NC_015703.1 PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16); COGs: COG4122 O-methyltransferase; InterPro IPR002935; KEGG: dfe:Dfer_2897 O-methyltransferase 3; PFAM: O-methyltransferase, family 3; PRIAM: Caffeoyl-CoA O-methyltransferase; SPTR: O-methyltransferase 3; processing peptidase 796111 10869183 Runsl_0667 Runella slithyformis DSM 19594 processing peptidase YP_004654242.1 794873 D 761193 CDS YP_004654243.1 338210196 10869184 796247..796888 1 NC_015703.1 PFAM: O-methyltransferase; InterPro IPR008258:IPR018392:IPR002482; KEGG: sli:Slin_0474 peptidoglycan-binding lysin domain protein; PFAM: Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SPTR: Peptidoglycan-binding lysin domain protein; caffeoyl-CoA O-methyltransferase 796888 10869184 Runsl_0668 Runella slithyformis DSM 19594 caffeoyl-CoA O-methyltransferase YP_004654243.1 796247 D 761193 CDS YP_004654244.1 338210197 10869185 796909..799083 1 NC_015703.1 PFAM: Transglycosylase SLT domain; LysM domain; KEGG: mtt:Ftrac_0122 hypothetical protein; SPTR: uncharacterized protein; lytic transglycosylase 799083 10869185 Runsl_0669 Runella slithyformis DSM 19594 lytic transglycosylase YP_004654244.1 796909 D 761193 CDS YP_004654245.1 338210198 10869186 799080..799643 1 NC_015703.1 PFAM: Protein of unknown function (DUF3109); COGs: COG3695 methylated DNA-protein cysteine methyltransferase; InterPro IPR014048; KEGG: sli:Slin_0476 methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding protein; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; SPTR: Methylated-DNA-(Protein)-cysteine S-methyltransferase DNA binding protein; hypothetical protein 799643 10869186 Runsl_0670 Runella slithyformis DSM 19594 hypothetical protein YP_004654245.1 799080 D 761193 CDS YP_004654246.1 338210199 10869187 799681..800010 1 NC_015703.1 PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_2542 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein; methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding protein 800010 10869187 Runsl_0671 Runella slithyformis DSM 19594 methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding protein YP_004654246.1 799681 D 761193 CDS YP_004654247.1 338210200 10869188 800131..802137 1 NC_015703.1 PFAM: WD40-like Beta Propeller Repeat; OmpA family; OmpA/MotB domain-containing protein 802137 10869188 Runsl_0672 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004654247.1 800131 D 761193 CDS YP_004654248.1 338210201 10869189 802256..803065 1 NC_015703.1 hypothetical protein 803065 10869189 Runsl_0673 Runella slithyformis DSM 19594 hypothetical protein YP_004654248.1 802256 D 761193 CDS YP_004654249.1 338210202 10869190 803445..803618 1 NC_015703.1 hypothetical protein 803618 10869190 Runsl_0674 Runella slithyformis DSM 19594 hypothetical protein YP_004654249.1 803445 D 761193 CDS YP_004654250.1 338210203 10869191 803809..804204 1 NC_015703.1 InterPro IPR002559; KEGG: app:CAP2UW1_1881 transposase IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase IS4 family protein; hypothetical protein 804204 10869191 Runsl_0675 Runella slithyformis DSM 19594 hypothetical protein YP_004654250.1 803809 D 761193 CDS YP_004654251.1 338210204 10869192 804334..805350 1 NC_015703.1 PFAM: Transposase DDE domain; COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310; KEGG: sli:Slin_1055 histidine triad (HIT) protein; PFAM: Histidine triad (HIT) protein; SPTR: Histidine triad (HIT) protein; transposase IS4 family protein 805350 10869192 Runsl_0676 Runella slithyformis DSM 19594 transposase IS4 family protein YP_004654251.1 804334 D 761193 CDS YP_004654252.1 338210205 10869193 complement(805463..805852) 1 NC_015703.1 PFAM: HIT domain; KEGG: lby:Lbys_2206 thrombospondin type 3 repeat-containing protein; SPTR: Thrombospondin type 3 repeat-containing protein; histidine triad (HIT) protein 805852 10869193 Runsl_0677 Runella slithyformis DSM 19594 histidine triad (HIT) protein YP_004654252.1 805463 R 761193 CDS YP_004654253.1 338210206 10869194 complement(805927..806646) 1 NC_015703.1 COGs: COG0480 Translation elongation factors (GTPase); InterProIPR000795:IPR004161:IPR005517:IPR000640:IPR 004540:IPR005225; KEGG: sli:Slin_5571 translation elongation factor G; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; SPTR: Elongation factor G; TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; thrombospondin type 3 repeat-containing protein 806646 10869194 Runsl_0678 Runella slithyformis DSM 19594 thrombospondin type 3 repeat-containing protein YP_004654253.1 805927 R 761193 CDS YP_004654254.1 338210207 10869195 806949..809057 1 NC_015703.1 PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain; COGs: COG0051 Ribosomal protein S10; HAMAP: 30S ribosomal protein S10; InterPro IPR001848:IPR005731; KEGG: sli:Slin_5570 ribosomal protein S10; PFAM: Ribosomal protein S10; SPTR: 30S ribosomal protein S10; TIGRFAM: Ribosomal protein S10, bacterial; translation elongation factor G 809057 10869195 Runsl_0679 Runella slithyformis DSM 19594 translation elongation factor G YP_004654254.1 806949 D 761193 CDS YP_004654255.1 338210208 10869196 809147..809503 1 NC_015703.1 PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle; 30S ribosomal protein S10 809503 10869196 Runsl_0680 Runella slithyformis DSM 19594 30S ribosomal protein S10 YP_004654255.1 809147 D 761193 CDS YP_004654256.1 338210209 10869197 complement(809737..809892) 1 NC_015703.1 hypothetical protein 809892 10869197 Runsl_0681 Runella slithyformis DSM 19594 hypothetical protein YP_004654256.1 809737 R 761193 CDS YP_004654257.1 338210210 10869198 810172..810351 1 NC_015703.1 InterPro IPR000792; KEGG: ppm:PPSC2_c0399 transcriptional regulatory protein DegU (protease production enhancerprotein); PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: Transcriptional regulatory protein DegU (Protease production enhancerprotein); hypothetical protein 810351 10869198 Runsl_0682 Runella slithyformis DSM 19594 hypothetical protein YP_004654257.1 810172 D 761193 CDS YP_004654258.1 338210211 10869199 810356..810646 1 NC_015703.1 PFAM: Bacterial regulatory proteins, luxR family; LuxR family transcriptional regulator 810646 10869199 Runsl_0683 Runella slithyformis DSM 19594 LuxR family transcriptional regulator YP_004654258.1 810356 D 761193 CDS YP_004654259.1 338210212 10869200 810820..811641 1 NC_015703.1 hypothetical protein 811641 10869200 Runsl_0684 Runella slithyformis DSM 19594 hypothetical protein YP_004654259.1 810820 D 761193 CDS YP_004654260.1 338210213 10869201 811720..812238 1 NC_015703.1 InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_4749 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein 812238 10869201 Runsl_0685 Runella slithyformis DSM 19594 hypothetical protein YP_004654260.1 811720 D 761193 CDS YP_004654261.1 338210214 10869202 812311..814638 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB-dependent receptor plug 814638 10869202 Runsl_0686 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004654261.1 812311 D 761193 CDS YP_004654262.1 338210215 10869203 814638..815483 1 NC_015703.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sli:Slin_4261 sulfatase; PFAM: Sulfatase; PRIAM: Cerebroside-sulfatase; SPTR: Sulfatase; hypothetical protein 815483 10869203 Runsl_0687 Runella slithyformis DSM 19594 hypothetical protein YP_004654262.1 814638 D 761193 CDS YP_004654263.1 338210216 10869204 complement(815505..817019) 1 NC_015703.1 PFAM: Sulfatase; KEGG: cao:Celal_1651 hypothetical protein; SPTR: uncharacterized protein; Cerebroside-sulfatase 817019 10869204 Runsl_0688 Runella slithyformis DSM 19594 Cerebroside-sulfatase YP_004654263.1 815505 R 761193 CDS YP_004654264.1 338210217 10869205 817221..817958 1 NC_015703.1 KEGG: dfe:Dfer_1170 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 817958 10869205 Runsl_0689 Runella slithyformis DSM 19594 hypothetical protein YP_004654264.1 817221 D 761193 CDS YP_004654265.1 338210218 10869206 818038..819069 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 819069 10869206 Runsl_0690 Runella slithyformis DSM 19594 hypothetical protein YP_004654265.1 818038 D 761193 CDS YP_004654266.1 338210219 10869208 821153..822625 1 NC_015703.1 PFAM: Sulfatase; COGs: COG2989 conserved hypothetical protein; InterPro IPR002477:IPR005490; KEGG: cpi:Cpin_0941 ErfK/YbiS/YcfS/YnhG family protein; PFAM: YkuD domain; Peptidoglycan binding-like; SPTR: ErfK/YbiS/YcfS/YnhG family protein; Cerebroside-sulfatase 822625 10869208 Runsl_0692 Runella slithyformis DSM 19594 Cerebroside-sulfatase YP_004654266.1 821153 D 761193 CDS YP_004654267.1 338210220 10869209 822871..824535 1 NC_015703.1 PFAM: peptidoglycan binding domain; L,D-transpeptidase catalytic domain; COGs: COG0443 Molecular chaperone; InterPro IPR013126; KEGG: sli:Slin_1429 DnaK-type molecular chaperone DnaK; PFAM: Heat shock protein 70; SPTR: DnaK-type molecular chaperone DnaK; ErfK/YbiS/YcfS/YnhG family protein 824535 10869209 Runsl_0693 Runella slithyformis DSM 19594 ErfK/YbiS/YcfS/YnhG family protein YP_004654267.1 822871 D 761193 CDS YP_004654268.1 338210221 10869210 824546..825823 1 NC_015703.1 PFAM: Hsp70 protein; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_5135 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; molecular chaperone DnaK 825823 10869210 Runsl_0694 Runella slithyformis DSM 19594 molecular chaperone DnaK YP_004654268.1 824546 D 761193 CDS YP_004654269.1 338210222 10869211 complement(825807..827099) 1 NC_015703.1 PFAM: Outer membrane efflux protein; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: dfe:Dfer_5136 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; outer membrane efflux protein 827099 10869211 Runsl_0695 Runella slithyformis DSM 19594 outer membrane efflux protein YP_004654269.1 825807 R 761193 CDS YP_004654270.1 338210223 10869212 complement(827251..830355) 1 NC_015703.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_5137 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; acriflavin resistance protein 830355 10869212 Runsl_0696 Runella slithyformis DSM 19594 acriflavin resistance protein YP_004654270.1 827251 R 761193 CDS YP_004654271.1 338210224 10869213 complement(830352..831422) 1 NC_015703.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; RND family efflux transporter MFP subunit 831422 10869213 Runsl_0697 Runella slithyformis DSM 19594 RND family efflux transporter MFP subunit YP_004654271.1 830352 R 761193 CDS YP_004654272.1 338210225 10869214 complement(831965..832285) 1 NC_015703.1 KEGG: sli:Slin_1872 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 832285 10869214 Runsl_0698 Runella slithyformis DSM 19594 hypothetical protein YP_004654272.1 831965 R 761193 CDS YP_004654273.1 338210226 10869215 complement(832717..833925) 1 NC_015703.1 PFAM: Protein of unknown function (DUF3570); KEGG: sli:Slin_1873 lipoprotein; SPTR: lipoprotein; hypothetical protein 833925 10869215 Runsl_0699 Runella slithyformis DSM 19594 hypothetical protein YP_004654273.1 832717 R 761193 CDS YP_004654274.1 338210227 10869216 complement(834002..834223) 1 NC_015703.1 COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: cpi:Cpin_5765 ApbE family lipoprotein; PFAM: ApbE-like lipoprotein; SPTR: ApbE family lipoprotein; lipoprotein 834223 10869216 Runsl_0700 Runella slithyformis DSM 19594 lipoprotein YP_004654274.1 834002 R 761193 CDS YP_004654275.1 338210228 10869217 complement(834262..835191) 1 NC_015703.1 PFAM: ApbE family; KEGG: sli:Slin_1875 hypothetical protein; SPTR: uncharacterized protein; ApbE family lipoprotein 835191 10869217 Runsl_0701 Runella slithyformis DSM 19594 ApbE family lipoprotein YP_004654275.1 834262 R 761193 CDS YP_004654276.1 338210229 10869218 complement(835202..835645) 1 NC_015703.1 PFAM: AhpC/TSA family; InterPro IPR017941; KEGG: sli:Slin_1876 Rieske (2Fe-2S) iron-sulphur domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Rieske (2Fe-2S) iron-sulphur domain protein; hypothetical protein 835645 10869218 Runsl_0702 Runella slithyformis DSM 19594 hypothetical protein YP_004654276.1 835202 R 761193 CDS YP_004654277.1 338210230 10869219 complement(835672..836172) 1 NC_015703.1 PFAM: Rieske [2Fe-2S] domain; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_0332 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; Rieske (2Fe-2S) domain-containing protein 836172 10869219 Runsl_0703 Runella slithyformis DSM 19594 Rieske (2Fe-2S) domain-containing protein YP_004654277.1 835672 R 761193 CDS YP_004654278.1 338210231 10869220 complement(836512..839058) 1 NC_015703.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_0331 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; TonB-dependent receptor plug 839058 10869220 Runsl_0704 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004654278.1 836512 R 761193 CDS YP_004654279.1 338210232 10869221 839397..840509 1 NC_015703.1 PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_3280 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; signal transduction histidine kinase 840509 10869221 Runsl_0705 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004654279.1 839397 D 761193 CDS YP_004654280.1 338210233 10869222 840499..841248 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; KEGG: dfe:Dfer_4613 hypothetical protein; SPTR: uncharacterized protein; LytTR family two component transcriptional regulator 841248 10869222 Runsl_0706 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004654280.1 840499 D 761193 CDS YP_004654281.1 338210234 10869223 complement(841333..842544) 1 NC_015703.1 InterPro IPR000834; KEGG: gau:GAU_2982 hypothetical protein; PFAM: Peptidase M14, carboxypeptidase A; SMART: Peptidase M14, carboxypeptidase A; SPTR: peptidase M14, carboxypeptidase A; hypothetical protein 842544 10869223 Runsl_0707 Runella slithyformis DSM 19594 hypothetical protein YP_004654281.1 841333 R 761193 CDS YP_004654282.1 338210235 10869224 842822..844738 1 NC_015703.1 PFAM: Zinc carboxypeptidase; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sfu:Sfum_1138 beta-lactamase domain-containing protein; SPTR: Beta-lactamase domain protein; peptidase M14 carboxypeptidase A 844738 10869224 Runsl_0708 Runella slithyformis DSM 19594 peptidase M14 carboxypeptidase A YP_004654282.1 842822 D 761193 CDS YP_004654283.1 338210236 10869225 complement(844866..845582) 1 NC_015703.1 PFAM: Metallo-beta-lactamase superfamily; COGs: COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase glutamine amidotransferase domain; HAMAP: Phosphoribosylformylglycinamidine synthase 1; InterPro IPR011698:IPR010075; KEGG: lby:Lbys_3066 phosphoribosylformylglycinamidine synthase subunit I; PFAM: CobB/CobQ-like glutamine amidotransferase; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: Phosphoribosylformylglycinamidine synthase subunit I; TIGRFAM: Phosphoribosylformylglycinamidine synthase I; hypothetical protein 845582 10869225 Runsl_0709 Runella slithyformis DSM 19594 hypothetical protein YP_004654283.1 844866 R 761193 CDS YP_004654284.1 338210237 10869226 845812..846498 1 NC_015703.1 PFAM: CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: phosphoribosylformylglycinamidine synthase I; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: dfe:Dfer_3196 surface antigen (D15); PFAM: Bacterial surface antigen (D15); SPTR: Surface antigen (D15); phosphoribosylformylglycinamidine synthase 1 846498 10869226 Runsl_0710 Runella slithyformis DSM 19594 phosphoribosylformylglycinamidine synthase 1 YP_004654284.1 845812 D 761193 CDS YP_004654285.1 338210238 10869227 complement(846572..848914) 1 NC_015703.1 PFAM: Surface antigen; InterPro IPR007452; KEGG: dfe:Dfer_3195 protein of unknown function DUF490; PFAM: Protein of unknown function DUF490; SPTR: uncharacterized protein; manually curated; surface antigen (D15) 848914 10869227 Runsl_0711 Runella slithyformis DSM 19594 surface antigen (D15) YP_004654285.1 846572 R 761193 CDS YP_004654286.1 338210239 10869228 complement(848911..853686) 1 NC_015703.1 PFAM: Family of unknown function (DUF490); KEGG: dfe:Dfer_3194 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 853686 10869228 Runsl_0712 Runella slithyformis DSM 19594 hypothetical protein YP_004654286.1 848911 R 761193 CDS YP_004654287.1 338210240 10869229 complement(853808..854539) 1 NC_015703.1 hypothetical protein 854539 10869229 Runsl_0713 Runella slithyformis DSM 19594 hypothetical protein YP_004654287.1 853808 R 761193 CDS YP_004654288.1 338210241 10869230 854561..854719 1 NC_015703.1 COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; InterPro IPR005475:IPR005476; KEGG: lby:Lbys_1402 transketolase central region; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: Pyruvate dehydrogenase (acetyl-transferring); SPTR: Transketolase central region; hypothetical protein 854719 10869230 Runsl_0714 Runella slithyformis DSM 19594 hypothetical protein YP_004654288.1 854561 D 761193 CDS YP_004654289.1 338210242 10869231 complement(854768..855751) 1 NC_015703.1 PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; COGs: COG2124 Cytochrome P450; InterPro IPR001128; KEGG: sli:Slin_0451 cytochrome P450; PFAM: Cytochrome P450; PRIAM: Unspecific monooxygenase; SPTR: Cytochrome P450; manually curated; pyruvate dehydrogenase 855751 10869231 Runsl_0715 Runella slithyformis DSM 19594 pyruvate dehydrogenase YP_004654289.1 854768 R 761193 CDS YP_004654290.1 338210243 10869232 complement(855918..857309) 1 NC_015703.1 PFAM: Cytochrome P450; COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: dfe:Dfer_2377 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; monooxygenase 857309 10869232 Runsl_0716 Runella slithyformis DSM 19594 monooxygenase YP_004654290.1 855918 R 761193 CDS YP_004654291.1 338210244 10869233 857537..858430 1 NC_015703.1 PFAM: OmpA family; SPTR: Transposase IS4 family protein; OmpA/MotB domain-containing protein 858430 10869233 Runsl_0717 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004654291.1 857537 D 761193 CDS YP_004654292.1 338210245 10869234 complement(858463..859809) 1 NC_015703.1 COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151:IPR004447; KEGG: sli:Slin_3923 carboxyl-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: Carboxyl-terminal protease; TIGRFAM: Peptidase S41A, C-terminal protease; hypothetical protein 859809 10869234 Runsl_0718 Runella slithyformis DSM 19594 hypothetical protein YP_004654292.1 858463 R 761193 CDS YP_004654293.1 338210246 10869235 860000..861652 1 NC_015703.1 PFAM: Peptidase S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_4671 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; carboxyl-terminal protease 861652 10869235 Runsl_0719 Runella slithyformis DSM 19594 carboxyl-terminal protease YP_004654293.1 860000 D 761193 CDS YP_004654294.1 338210247 10869236 complement(861861..862634) 1 NC_015703.1 PFAM: short chain dehydrogenase; Prodigal; manually curated; 3-oxoacyl-ACP reductase 862634 10869236 Runsl_0720 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004654294.1 861861 R 761193 CDS YP_004654295.1 338210248 10869238 complement(863316..864503) 1 NC_015703.1 PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase; COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase; HAMAP: nicotinate-nucleotide adenylyltransferase; InterPro IPR004820:IPR004821:IPR005248; KEGG: sli:Slin_5549 nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: Cytidylyltransferase; PRIAM: Nicotinate-nucleotide adenylyltransferase; SPTR: Probable nicotinate-nucleotide adenylyltransferase; TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; amidohydrolase 864503 10869238 Runsl_0722 Runella slithyformis DSM 19594 amidohydrolase YP_004654295.1 863316 R 761193 CDS YP_004654296.1 338210249 10869239 864627..865199 1 NC_015703.1 PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain; COGs: COG0236 Acyl carrier protein; HAMAP: Acyl carrier protein (ACP); InterPro IPR003231:IPR006163; KEGG: mtt:Ftrac_1173 acyl carrier protein; PFAM: Phosphopantetheine-binding; SPTR: Acyl carrier protein 1; TIGRFAM: Acyl carrier protein (ACP); nicotinate-nucleotide adenylyltransferase 865199 10869239 Runsl_0723 Runella slithyformis DSM 19594 nicotinate-nucleotide adenylyltransferase YP_004654296.1 864627 D 761193 CDS YP_004654297.1 338210250 10869240 865257..865493 1 NC_015703.1 PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein; COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030:IPR014031:IPR017568; KEGG: dfe:Dfer_3915 3-oxoacyl-(acyl-carrier-protein) synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase II; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase 2; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; acyl carrier protein 865493 10869240 Runsl_0724 Runella slithyformis DSM 19594 acyl carrier protein YP_004654297.1 865257 D 761193 CDS YP_004654298.1 338210251 10869241 865524..866771 1 NC_015703.1 PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II; COGs: COG0571 dsRNA-specific ribonuclease; HAMAP: Ribonuclease III, bacterial; InterPro IPR011907:IPR000999:IPR001159; KEGG: dfe:Dfer_3916 ribonuclease III; PFAM: Ribonuclease III; Double-stranded RNA binding; PRIAM: Ribonuclease III; SMART: Ribonuclease III; Double-stranded RNA binding; SPTR: Ribonuclease 3; TIGRFAM: Ribonuclease III, bacterial; 3-oxoacyl-ACP synthase 866771 10869241 Runsl_0725 Runella slithyformis DSM 19594 3-oxoacyl-ACP synthase YP_004654298.1 865524 D 761193 CDS YP_004654299.1 338210252 10869242 866787..867533 1 NC_015703.1 PFAM: RNase3 domain; Double-stranded RNA binding motif; TIGRFAM: ribonuclease III, bacterial; ribonuclease 3 867533 10869242 Runsl_0726 Runella slithyformis DSM 19594 ribonuclease 3 YP_004654299.1 866787 D 761193 CDS YP_004654300.1 338210253 10869243 complement(867534..867638) 1 NC_015703.1 InterPro IPR002559; KEGG: app:CAP2UW1_1881 transposase IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase IS4 family protein; hypothetical protein 867638 10869243 Runsl_0727 Runella slithyformis DSM 19594 hypothetical protein YP_004654300.1 867534 R 761193 CDS YP_004654301.1 338210254 10869244 867751..868767 1 NC_015703.1 PFAM: Transposase DDE domain; transposase IS4 family protein 868767 10869244 Runsl_0728 Runella slithyformis DSM 19594 transposase IS4 family protein YP_004654301.1 867751 D 761193 CDS YP_004654302.1 338210255 10869245 868804..869310 1 NC_015703.1 hypothetical protein 869310 10869245 Runsl_0729 Runella slithyformis DSM 19594 hypothetical protein YP_004654302.1 868804 D 761193 CDS YP_004654303.1 338210256 10869246 869433..869792 1 NC_015703.1 hypothetical protein 869792 10869246 Runsl_0730 Runella slithyformis DSM 19594 hypothetical protein YP_004654303.1 869433 D 761193 CDS YP_004654304.1 338210257 10869247 869926..870387 1 NC_015703.1 KEGG: dfe:Dfer_3662 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 870387 10869247 Runsl_0731 Runella slithyformis DSM 19594 hypothetical protein YP_004654304.1 869926 D 761193 CDS YP_004654305.1 338210258 10869248 complement(870556..871179) 1 NC_015703.1 InterPro IPR013211; KEGG: sli:Slin_5493 hypothetical protein; PFAM: LVIVD; SPTR: uncharacterized protein; hypothetical protein 871179 10869248 Runsl_0732 Runella slithyformis DSM 19594 hypothetical protein YP_004654305.1 870556 R 761193 CDS YP_004654306.1 338210259 10869249 complement(871204..872487) 1 NC_015703.1 COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; KEGG: sli:Slin_5757 superfamily I DNA and RNA helicase and helicase subunits-like protein; SPTR: Superfamily I DNA and RNA helicase and helicase subunits-like protein; LVIVD repeat-containing protein 872487 10869249 Runsl_0733 Runella slithyformis DSM 19594 LVIVD repeat-containing protein YP_004654306.1 871204 R 761193 CDS YP_004654307.1 338210260 10869250 complement(872596..876567) 1 NC_015703.1 KEGG: cao:Celal_1424 hypothetical protein; SPTR: uncharacterized protein; superfamily I DNA and RNA helicase and helicase subunits-like protein 876567 10869250 Runsl_0734 Runella slithyformis DSM 19594 superfamily I DNA and RNA helicase and helicase subunits-like protein YP_004654307.1 872596 R 761193 CDS YP_004654308.1 338210261 10869251 complement(876554..876907) 1 NC_015703.1 KEGG: sli:Slin_3044 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 876907 10869251 Runsl_0735 Runella slithyformis DSM 19594 hypothetical protein YP_004654308.1 876554 R 761193 CDS YP_004654309.1 338210262 10869252 877056..877244 1 NC_015703.1 InterPro IPR014127; KEGG: dfe:Dfer_5052 hypothetical protein; PFAM: Conserved hypothetical protein CHP02757; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02757; hypothetical protein 877244 10869252 Runsl_0736 Runella slithyformis DSM 19594 hypothetical protein YP_004654309.1 877056 D 761193 CDS YP_004654310.1 338210263 10869253 877244..878014 1 NC_015703.1 PFAM: Protein of unknown function (DUF2400); TIGRFAM: TIGR02757 family protein; hypothetical protein 878014 10869253 Runsl_0737 Runella slithyformis DSM 19594 hypothetical protein YP_004654310.1 877244 D 761193 CDS YP_004654311.1 338210264 10869254 878090..878242 1 NC_015703.1 COGs: COG3744 conserved hypothetical protein; InterPro IPR002716; KEGG: sli:Slin_3651 PilT protein domain protein; PFAM: PilT protein, N-terminal; SPTR: PilT protein domain protein; hypothetical protein 878242 10869254 Runsl_0738 Runella slithyformis DSM 19594 hypothetical protein YP_004654311.1 878090 D 761193 CDS YP_004654312.1 338210265 10869255 878242..878655 1 NC_015703.1 PFAM: PIN domain; COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: lpp:plpp0112 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: Nucleotidyltransferase plus glutamate rich protein grpb plus ribosomal protein alanine acetyltransferase; twitching motility protein PilT 878655 10869255 Runsl_0739 Runella slithyformis DSM 19594 twitching motility protein PilT YP_004654312.1 878242 D 761193 CDS YP_004654313.1 338210266 10869256 complement(878667..879173) 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; InterPro IPR006976; KEGG: dfe:Dfer_1230 VanZ family protein; PFAM: VanZ like protein; SPTR: VanZ family protein; N-acetyltransferase GCN5 879173 10869256 Runsl_0740 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004654313.1 878667 R 761193 CDS YP_004654314.1 338210267 10869257 complement(879180..879548) 1 NC_015703.1 PFAM: VanZ like family; COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; HAMAP: Isopropylmalate dehydrogenase; InterPro IPR004429:IPR001804; KEGG: dfe:Dfer_3671 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; PRIAM: 3-isopropylmalate dehydrogenase; SPTR: 3-isopropylmalate dehydrogenase; TIGRFAM: Isopropylmalate dehydrogenase; VanZ family protein 879548 10869257 Runsl_0741 Runella slithyformis DSM 19594 VanZ family protein YP_004654314.1 879180 R 761193 CDS YP_004654315.1 338210268 10869258 complement(879656..880729) 1 NC_015703.1 PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; KEGG: mtt:Ftrac_0562 hypothetical protein; SPTR: uncharacterized protein; 3-isopropylmalate dehydrogenase 880729 10869258 Runsl_0742 Runella slithyformis DSM 19594 3-isopropylmalate dehydrogenase YP_004654315.1 879656 R 761193 CDS YP_004654316.1 338210269 10869259 complement(880779..881156) 1 NC_015703.1 COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891:IPR013709; KEGG: sli:Slin_5900 pyruvate carboxyltransferase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; PRIAM: (R)-citramalate synthase; SPTR: Pyruvate carboxyltransferase; hypothetical protein 881156 10869259 Runsl_0743 Runella slithyformis DSM 19594 hypothetical protein YP_004654316.1 880779 R 761193 CDS YP_004654317.1 338210270 10869260 complement(881187..882686) 1 NC_015703.1 PFAM: LeuA allosteric (dimerisation) domain; HMGL-like; COGs: COG0066 3-isopropylmalate dehydratase small subunit; InterPro IPR000573:IPR004431; KEGG: dfe:Dfer_3673 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel; SPTR: 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit region; (R)-citramalate synthase 882686 10869260 Runsl_0744 Runella slithyformis DSM 19594 (R)-citramalate synthase YP_004654317.1 881187 R 761193 CDS YP_004654318.1 338210271 10869261 complement(882707..883303) 1 NC_015703.1 PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; COGs: COG0065 3-isopropylmalate dehydratase large subunit; InterPro IPR001030:IPR004430; KEGG: dfe:Dfer_3675 isopropylmalate isomerase large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; SPTR: 3-isopropylmalate dehydratase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit region; 3-isopropylmalate dehydratase small subunit 883303 10869261 Runsl_0745 Runella slithyformis DSM 19594 3-isopropylmalate dehydratase small subunit YP_004654318.1 882707 R 761193 CDS YP_004654319.1 338210272 10869262 complement(883318..884721) 1 NC_015703.1 PFAM: Aconitase (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: sli:Slin_5908 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; 3-isopropylmalate dehydratase large subunit 884721 10869262 Runsl_0746 Runella slithyformis DSM 19594 3-isopropylmalate dehydratase large subunit YP_004654319.1 883318 R 761193 CDS YP_004654320.1 338210273 10869263 complement(884838..885680) 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: lby:Lbys_0758 hypothetical protein; SPTR: uncharacterized protein; AraC family transcriptional regulator 885680 10869263 Runsl_0747 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004654320.1 884838 R 761193 CDS YP_004654321.1 338210274 10869264 complement(885769..885987) 1 NC_015703.1 COGs: COG2361 conserved hypothetical protein; InterPro IPR008201; KEGG: rca:Rcas_0089 hypothetical protein; PFAM: Protein of unknown function DUF86; SPTR: uncharacterized protein; manually curated; hypothetical protein 885987 10869264 Runsl_0748 Runella slithyformis DSM 19594 hypothetical protein YP_004654321.1 885769 R 761193 CDS YP_004654322.1 338210275 10869265 complement(886071..886322) 1 NC_015703.1 PFAM: Protein of unknown function DUF86; Prodigal; manually curated; hypothetical protein 886322 10869265 Runsl_0749 Runella slithyformis DSM 19594 hypothetical protein YP_004654322.1 886071 R 761193 CDS YP_004654323.1 338210276 10869267 complement(886663..886899) 1 NC_015703.1 PFAM: YcfA-like protein; InterPro IPR005357; KEGG: mhu:Mhun_2648 hypothetical protein; PFAM: Uncharacterised protein family UPF0150; SPTR: uncharacterized protein; hypothetical protein 886899 10869267 Runsl_0751 Runella slithyformis DSM 19594 hypothetical protein YP_004654323.1 886663 R 761193 CDS YP_004654324.1 338210277 10869268 complement(886899..887126) 1 NC_015703.1 PFAM: Uncharacterised protein family (UPF0150); COGs: COG1171 Threonine dehydratase; InterPro IPR001926:IPR001721:IPR011820; KEGG: sli:Slin_5911 threonine dehydratase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threonine dehydratase, C-terminal; SPTR: Threonine dehydratase; TIGRFAM: Threonine dehydratase; hypothetical protein 887126 10869268 Runsl_0752 Runella slithyformis DSM 19594 hypothetical protein YP_004654324.1 886899 R 761193 CDS YP_004654325.1 338210278 10869269 complement(887142..888425) 1 NC_015703.1 PFAM: C-terminal regulatory domain of Threonine dehydratase; Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine ammonia-lyase, biosynthetic, long form; threonine dehydratase; COGs: COG0059 Ketol-acid reductoisomerase; InterPro IPR013116:IPR000506:IPR013023; KEGG: sli:Slin_5912 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal; SPTR: Ketol-acid reductoisomerase; TIGRFAM: Acetohydroxy acid isomeroreductase; threonine dehydratase 888425 10869269 Runsl_0753 Runella slithyformis DSM 19594 threonine dehydratase YP_004654325.1 887142 R 761193 CDS YP_004654326.1 338210279 10869270 complement(888560..889603) 1 NC_015703.1 PFAM: Acetohydroxy acid isomeroreductase, catalytic domain; TIGRFAM: ketol-acid reductoisomerase; InterPro IPR013216; KEGG: aba:Acid345_3127 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Generic methyltransferase; ketol-acid reductoisomerase 889603 10869270 Runsl_0754 Runella slithyformis DSM 19594 ketol-acid reductoisomerase YP_004654326.1 888560 R 761193 CDS YP_004654327.1 338210280 10869271 complement(889641..890393) 1 NC_015703.1 PFAM: Methyltransferase domain; COGs: COG0440 Acetolactate synthase small (regulatory) subunit; InterPro IPR002912:IPR019455:IPR004789; KEGG: sli:Slin_5913 acetolactate synthase, small subunit; PFAM: Amino acid-binding ACT; Acetolactate synthase, small subunit, C-terminal; SPTR: Acetolactate synthase, small subunit; TIGRFAM: Acetolactate synthase, small subunit; type 11 methyltransferase 890393 10869271 Runsl_0755 Runella slithyformis DSM 19594 type 11 methyltransferase YP_004654327.1 889641 R 761193 CDS YP_004654328.1 338210281 10869272 complement(890596..891132) 1 NC_015703.1 PFAM: ACT domain; Small subunit of acetolactate synthase; TIGRFAM: acetolactate synthase, small subunit; COGs: COG0028 Thiamine pyrophosphate-requiring protein; InterPro IPR012001:IPR012000:IPR011766:IPR012846; KEGG: dfe:Dfer_3681 acetolactate synthase, large subunit, biosynthetic type; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: Acetolactate synthase; SPTR: Acetolactate synthase; TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; acetolactate synthase small subunit 891132 10869272 Runsl_0756 Runella slithyformis DSM 19594 acetolactate synthase small subunit YP_004654328.1 890596 R 761193 CDS YP_004654329.1 338210282 10869273 complement(891134..892930) 1 NC_015703.1 PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; COGs: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; HAMAP: Dihydroxy-acid dehydratase; InterPro IPR004404:IPR000581; KEGG: sli:Slin_5915 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; PRIAM: Dihydroxy-acid dehydratase; SPTR: Dihydroxy-acid dehydratase; TIGRFAM: Dihydroxy-acid dehydratase; acetolactate synthase large subunit 892930 10869273 Runsl_0757 Runella slithyformis DSM 19594 acetolactate synthase large subunit YP_004654329.1 891134 R 761193 CDS YP_004654330.1 338210283 10869274 complement(892966..894651) 1 NC_015703.1 PFAM: Dehydratase; TIGRFAM: dihydroxy-acid dehydratase; COGs: COG4095 conserved hypothetical protein; InterPro IPR018169:IPR006603; KEGG: cte:CT0076 hypothetical protein; PFAM: MtN3/saliva-related transmembrane protein, conserved region; SMART: Cystinosin/ERS1p repeat; SPTR: uncharacterized protein; dihydroxy-acid dehydratase 894651 10869274 Runsl_0758 Runella slithyformis DSM 19594 dihydroxy-acid dehydratase YP_004654330.1 892966 R 761193 CDS YP_004654331.1 338210284 10869275 895112..895375 1 NC_015703.1 PFAM: PQ loop repeat; COGs: COG0469 Pyruvate kinase; InterPro IPR015793:IPR015794:IPR001697; KEGG: dfe:Dfer_3378 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta; PRIAM: Pyruvate kinase; SPTR: Pyruvate kinase; TIGRFAM: Pyruvate kinase; hypothetical protein 895375 10869275 Runsl_0759 Runella slithyformis DSM 19594 hypothetical protein YP_004654331.1 895112 D 761193 CDS YP_004654332.1 338210285 10869276 complement(895447..896904) 1 NC_015703.1 PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase; COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; InterPro IPR011545:IPR001650:IPR014001:IPR005259; KEGG: dfe:Dfer_3377 primosomal protein N'; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Primosomal protein N'; TIGRFAM: Primosomal protein n; pyruvate kinase 896904 10869276 Runsl_0760 Runella slithyformis DSM 19594 pyruvate kinase YP_004654332.1 895447 R 761193 CDS YP_004654333.1 338210286 10869277 complement(896934..899450) 1 NC_015703.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: primosomal protein N'; KEGG: osp:Odosp_1433 hypothetical protein; SPTR: uncharacterized protein; primosomal protein N' 899450 10869277 Runsl_0761 Runella slithyformis DSM 19594 primosomal protein N' YP_004654333.1 896934 R 761193 CDS YP_004654334.1 338210287 10869278 899584..899991 1 NC_015703.1 InterPro IPR008454; KEGG: sli:Slin_4061 hypothetical protein; PFAM: Collagen-binding surface protein Cna-like, B region; SPTR: uncharacterized protein; hypothetical protein 899991 10869278 Runsl_0762 Runella slithyformis DSM 19594 hypothetical protein YP_004654334.1 899584 D 761193 CDS YP_004654335.1 338210288 10869279 900792..904910 1 NC_015703.1 KEGG: dfe:Dfer_3376 hypothetical protein; SPTR: uncharacterized protein; Cna B domain-containing protein 904910 10869279 Runsl_0763 Runella slithyformis DSM 19594 Cna B domain-containing protein YP_004654335.1 900792 D 761193 CDS YP_004654336.1 338210289 10869280 complement(904929..905531) 1 NC_015703.1 PFAM: Aminotransferase class IV; COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR015890; KEGG: dfe:Dfer_3375 para-aminobenzoate synthase component I; PFAM: Chorismate binding, C-terminal; SPTR: Chorismate binding-like protein; hypothetical protein 905531 10869280 Runsl_0764 Runella slithyformis DSM 19594 hypothetical protein YP_004654336.1 904929 R 761193 CDS YP_004654337.1 338210290 10869281 complement(905509..906516) 1 NC_015703.1 PFAM: chorismate binding enzyme; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: mtt:Ftrac_3639 surface antigen (d15); PFAM: Bacterial surface antigen (D15); SPTR: Surface antigen (D15); chorismate-binding protein 906516 10869281 Runsl_0765 Runella slithyformis DSM 19594 chorismate-binding protein YP_004654337.1 905509 R 761193 CDS YP_004654338.1 338210291 10869282 906579..907670 1 NC_015703.1 PFAM: Surface antigen; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: rbi:RB2501_00611 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase; surface antigen (D15) 907670 10869282 Runsl_0766 Runella slithyformis DSM 19594 surface antigen (D15) YP_004654338.1 906579 D 761193 CDS YP_004654339.1 338210292 10869283 907716..908414 1 NC_015703.1 PFAM: Glycosyl transferase 2; family 2 glycosyl transferase 908414 10869283 Runsl_0767 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004654339.1 907716 D 761193 CDS YP_004654340.1 338210293 10869284 908445..908648 1 NC_015703.1 KEGG: dfe:Dfer_1441 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 908648 10869284 Runsl_0768 Runella slithyformis DSM 19594 hypothetical protein YP_004654340.1 908445 D 761193 CDS YP_004654341.1 338210294 10869285 908906..909349 1 NC_015703.1 InterPro IPR001387; KEGG: pmz:HMPREF0659_A6177 toxin-antitoxin system, antitoxin component, Xre family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: XRE family transcriptional regulator; hypothetical protein 909349 10869285 Runsl_0769 Runella slithyformis DSM 19594 hypothetical protein YP_004654341.1 908906 D 761193 CDS YP_004654342.1 338210295 10869286 909355..909684 1 NC_015703.1 PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein 909684 10869286 Runsl_0770 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004654342.1 909355 D 761193 CDS YP_004654343.1 338210296 10869288 complement(910205..910480) 1 NC_015703.1 COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division; HAMAP: rRNA small subunit methyltransferase G; InterPro IPR003682; KEGG: dfe:Dfer_3357 methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G; SPTR: Ribosomal RNA small subunit methyltransferase G; TIGRFAM: rRNA small subunit methyltransferase G; hypothetical protein 910480 10869288 Runsl_0771 Runella slithyformis DSM 19594 hypothetical protein YP_004654343.1 910205 R 761193 CDS YP_004654344.1 338210297 10869289 complement(910518..911141) 1 NC_015703.1 PFAM: rRNA small subunit methyltransferase G; TIGRFAM: 16S rRNA (guanine(527)-N(7))-methyltransferase GidB; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_3358 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; ribosomal RNA small subunit methyltransferase G 911141 10869289 Runsl_0772 Runella slithyformis DSM 19594 ribosomal RNA small subunit methyltransferase G YP_004654344.1 910518 R 761193 CDS YP_004654345.1 338210298 10869290 complement(911182..912354) 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; InterPro IPR004803:IPR002616; KEGG: dfe:Dfer_3359 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; PRIAM: tRNA-guanine transglycosylase; SPTR: Queuine tRNA-ribosyltransferase; TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; family 2 glycosyl transferase 912354 10869290 Runsl_0773 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004654345.1 911182 R 761193 CDS YP_004654346.1 338210299 10869291 912468..913601 1 NC_015703.1 PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: dfe:Dfer_3360 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; queuine tRNA-ribosyltransferase 913601 10869291 Runsl_0774 Runella slithyformis DSM 19594 queuine tRNA-ribosyltransferase YP_004654346.1 912468 D 761193 CDS YP_004654347.1 338210300 10869292 913598..915280 1 NC_015703.1 PFAM: OmpA family; COGs: COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; InterProIPR001347:IPR001732:IPR014026:IPR014027:IPR 017476; KEGG: sli:Slin_4077 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; Sugar isomerase (SIS); UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; SPTR: Nucleotide sugar dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase; OmpA/MotB domain-containing protein 915280 10869292 Runsl_0775 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004654347.1 913598 D 761193 CDS YP_004654348.1 338210301 10869293 915357..916667 1 NC_015703.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase, central domain; UDP-glucose/GDP-mannose dehydrogenase, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase; COGs: COG0562 UDP-galactopyranose mutase; InterPro IPR006076:IPR015899:IPR004379; KEGG: dfe:Dfer_3361 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase, C-terminal; FAD dependent oxidoreductase; PRIAM: UDP-galactopyranose mutase; SPTR: UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; nucleotide sugar dehydrogenase 916667 10869293 Runsl_0776 Runella slithyformis DSM 19594 nucleotide sugar dehydrogenase YP_004654348.1 915357 D 761193 CDS YP_004654349.1 338210302 10869294 916761..917861 1 NC_015703.1 PFAM: UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; UDP-galactopyranose mutase 917861 10869294 Runsl_0777 Runella slithyformis DSM 19594 UDP-galactopyranose mutase YP_004654349.1 916761 D 761193 CDS YP_004654350.1 338210303 10869295 complement(917944..918261) 1 NC_015703.1 COGs: COG0247 Fe-S oxidoreductase; KEGG: dfe:Dfer_4017 oxidoreductase, Fe-S subunit; SPTR: Oxidoreductase, Fe-S subunit; hypothetical protein 918261 10869295 Runsl_0778 Runella slithyformis DSM 19594 hypothetical protein YP_004654350.1 917944 R 761193 CDS YP_004654351.1 338210304 10869296 complement(918254..919594) 1 NC_015703.1 COGs: COG1239 Mg-chelatase subunit ChlI; KEGG: sli:Slin_0326 Mg-chelatase subunit ChlI-like protein; SPTR: Mg-chelatase subunit ChlI-like protein; oxidoreductase, Fe-S subunit 919594 10869296 Runsl_0779 Runella slithyformis DSM 19594 oxidoreductase, Fe-S subunit YP_004654351.1 918254 R 761193 CDS YP_004654352.1 338210305 10869297 919798..921315 1 NC_015703.1 KEGG: sli:Slin_0645 hypothetical protein; SPTR: uncharacterized protein; Mg-chelatase subunit ChlI-like protein 921315 10869297 Runsl_0780 Runella slithyformis DSM 19594 Mg-chelatase subunit ChlI-like protein YP_004654352.1 919798 D 761193 CDS YP_004654353.1 338210306 10869298 complement(921374..922384) 1 NC_015703.1 COGs: COG5010 Flp pilus assembly protein TadD contains TPR repeats; InterPro IPR001440:IPR013105:IPR019734; KEGG: sli:Slin_1991 hypothetical protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide TPR_2 repeat protein; hypothetical protein 922384 10869298 Runsl_0781 Runella slithyformis DSM 19594 hypothetical protein YP_004654353.1 921374 R 761193 CDS YP_004654354.1 338210307 10869299 922662..923720 1 NC_015703.1 PFAM: Tetratricopeptide repeat; InterPro IPR000620; KEGG: cpi:Cpin_1584 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: uncharacterized protein; hypothetical protein 923720 10869299 Runsl_0782 Runella slithyformis DSM 19594 hypothetical protein YP_004654354.1 922662 D 761193 CDS YP_004654355.1 338210308 10869300 923763..924623 1 NC_015703.1 PFAM: EamA-like transporter family; KEGG: sli:Slin_6136 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 924623 10869300 Runsl_0783 Runella slithyformis DSM 19594 hypothetical protein YP_004654355.1 923763 D 761193 CDS YP_004654356.1 338210309 10869301 complement(924637..925197) 1 NC_015703.1 COGs: COG3002 conserved hypothetical protein; HAMAP: UPF0753 protein; InterPro IPR018752; KEGG: sli:Slin_1124 hypothetical protein; PFAM: Protein of unknown function DUF2309; SPTR: UPF0753 protein Slin_1124; hypothetical protein 925197 10869301 Runsl_0784 Runella slithyformis DSM 19594 hypothetical protein YP_004654356.1 924637 R 761193 CDS YP_004654357.1 338210310 10869302 925650..928145 1 NC_015703.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2309); COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR001516:IPR001750; KEGG: sli:Slin_1125 NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH dehydrogenase (Quinone); hypothetical protein 928145 10869302 Runsl_0785 Runella slithyformis DSM 19594 hypothetical protein YP_004654357.1 925650 D 761193 CDS YP_004654358.1 338210311 10869303 928155..930023 1 NC_015703.1 PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; COGs: COG3568 Metal-dependent hydrolase; InterPro IPR005135; KEGG: rba:RB8407 hypothetical protein; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; NADH dehydrogenase (quinone) 930023 10869303 Runsl_0786 Runella slithyformis DSM 19594 NADH dehydrogenase (quinone) YP_004654358.1 928155 D 761193 CDS YP_004654359.1 338210312 10869304 930217..931005 1 NC_015703.1 PFAM: Endonuclease/Exonuclease/phosphatase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: sli:Slin_1480 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; hypothetical protein 931005 10869304 Runsl_0787 Runella slithyformis DSM 19594 hypothetical protein YP_004654359.1 930217 D 761193 CDS YP_004654360.1 338210313 10869305 931002..931865 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain; COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220; KEGG: fbc:FB2170_10606 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase; PRIAM: Dihydrodipicolinate synthase; SPTR: Dihydrodipicolinate synthase; AraC family transcriptional regulator 931865 10869305 Runsl_0788 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004654360.1 931002 D 761193 CDS YP_004654361.1 338210314 10869306 932035..932940 1 NC_015703.1 PFAM: Dihydrodipicolinate synthetase; manually curated; dihydrodipicolinate synthase 932940 10869306 Runsl_0789 Runella slithyformis DSM 19594 dihydrodipicolinate synthase YP_004654361.1 932035 D 761193 CDS YP_004654362.1 338210315 10869308 933319..934197 1 NC_015703.1 PFAM: Zeta toxin; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: pbs:Plabr_1258 sulfatase; PFAM: Sulfatase; SPTR: Choline sulfatase; polynucleotide 5'-hydroxyl-kinase 934197 10869308 Runsl_0791 Runella slithyformis DSM 19594 polynucleotide 5'-hydroxyl-kinase YP_004654362.1 933319 D 761193 CDS YP_004654363.1 338210316 10869309 934322..935761 1 NC_015703.1 PFAM: Sulfatase; InterPro IPR005181; KEGG: sli:Slin_2555 hypothetical protein; PFAM: Protein of unknown function DUF303, acetylesterase SPTR: uncharacterized protein; sulfatase 935761 10869309 Runsl_0792 Runella slithyformis DSM 19594 sulfatase YP_004654363.1 934322 D 761193 CDS YP_004654364.1 338210317 10869310 935777..936577 1 NC_015703.1 PFAM: Domain of unknown function (DUF303); hypothetical protein 936577 10869310 Runsl_0793 Runella slithyformis DSM 19594 hypothetical protein YP_004654364.1 935777 D 761193 CDS YP_004654365.1 338210318 10869311 936577..936717 1 NC_015703.1 InterPro IPR006311; KEGG: sli:Slin_1890 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 936717 10869311 Runsl_0794 Runella slithyformis DSM 19594 hypothetical protein YP_004654365.1 936577 D 761193 CDS YP_004654366.1 338210319 10869312 936771..937286 1 NC_015703.1 COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076; KEGG: dfe:Dfer_4714 glucose-methanol-choline oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; hypothetical protein 937286 10869312 Runsl_0795 Runella slithyformis DSM 19594 hypothetical protein YP_004654366.1 936771 D 761193 CDS YP_004654367.1 338210320 10869313 937389..939098 1 NC_015703.1 PFAM: GMC oxidoreductase; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sli:Slin_3337 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; FAD dependent oxidoreductase 939098 10869313 Runsl_0796 Runella slithyformis DSM 19594 FAD dependent oxidoreductase YP_004654367.1 937389 D 761193 CDS YP_004654368.1 338210321 10869314 939206..940063 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; Prodigal; manually curated; xylose isomerase domain-containing protein 940063 10869314 Runsl_0797 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004654368.1 939206 D 761193 CDS YP_004654369.1 338210322 10869316 complement(940585..940755) 1 NC_015703.1 COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: mmp:MMP0791 TetR family transcriptional regulator member; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR Family Member; hypothetical protein 940755 10869316 Runsl_0799 Runella slithyformis DSM 19594 hypothetical protein YP_004654369.1 940585 R 761193 CDS YP_004654370.1 338210323 10869317 940921..941484 1 NC_015703.1 PFAM: Bacterial regulatory proteins, tetR family; KEGG: chu:CHU_3332 hypothetical protein; SPTR: uncharacterized protein; TetR family transcriptional regulator 941484 10869317 Runsl_0800 Runella slithyformis DSM 19594 TetR family transcriptional regulator YP_004654370.1 940921 D 761193 CDS YP_004654371.1 338210324 10869318 941497..942162 1 NC_015703.1 COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; InterPro IPR001041:IPR002888; KEGG: bmj:BMULJ_01550 isoquinoline 1-oxidoreductase subunit alpha; PFAM: [2Fe-2S]-binding; Ferredoxin; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: Aldehyde dehydrogenase subunit III; hypothetical protein 942162 10869318 Runsl_0801 Runella slithyformis DSM 19594 hypothetical protein YP_004654371.1 941497 D 761193 CDS YP_004654372.1 338210325 10869319 942227..942700 1 NC_015703.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR008274:IPR006311; KEGG: rbi:RB2501_13024 aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL-like protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: Twin-arginine translocation pathway signal; isoquinoline 1-oxidoreductase 942700 10869319 Runsl_0802 Runella slithyformis DSM 19594 isoquinoline 1-oxidoreductase YP_004654372.1 942227 D 761193 CDS YP_004654373.1 338210326 10869320 942706..944880 1 NC_015703.1 PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; InterPro IPR019288; KEGG: dfe:Dfer_3714 hypothetical protein; PFAM: 3'-5' exonuclease, PolB-like; SPTR: uncharacterized protein; isoquinoline 1-oxidoreductase 944880 10869320 Runsl_0803 Runella slithyformis DSM 19594 isoquinoline 1-oxidoreductase YP_004654373.1 942706 D 761193 CDS YP_004654374.1 338210327 10869321 complement(944989..945768) 1 NC_015703.1 PFAM: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; COGs: COG0242 N-formylmethionyl-tRNA deformylase; HAMAP: Formylmethionine deformylase; InterPro IPR000181; KEGG: dfe:Dfer_4052 peptide deformylase; PFAM: Formylmethionine deformylase; PRIAM: Peptide deformylase; SPTR: Peptide deformylase; TIGRFAM: Formylmethionine deformylase; 3'-5' exonuclease 945768 10869321 Runsl_0804 Runella slithyformis DSM 19594 3'-5' exonuclease YP_004654374.1 944989 R 761193 CDS YP_004654375.1 338210328 10869322 complement(945803..946375) 1 NC_015703.1 PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase; COGs: COG0816 endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); HAMAP: Holliday junction resolvase; InterPro IPR005227:IPR006641; KEGG: dfe:Dfer_4051 Holliday junction resolvase YqgF; PFAM: Resolvase, holliday junction-type, YqgF-like; SMART: Resolvase, RNase H-like fold; SPTR: Holliday junction resolvase; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; peptide deformylase 946375 10869322 Runsl_0805 Runella slithyformis DSM 19594 peptide deformylase YP_004654375.1 945803 R 761193 CDS YP_004654376.1 338210329 10869323 complement(946429..946842) 1 NC_015703.1 PFAM: Uncharacterised protein family (UPF0081); TIGRFAM: RNAse H-fold protein YqgF; COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254:IPR001478:IPR011782; KEGG: dfe:Dfer_3918 protease Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF; SPTR: Protease Do; TIGRFAM: Peptidase S1C, Do; Holliday junction resolvase 946842 10869323 Runsl_0806 Runella slithyformis DSM 19594 Holliday junction resolvase YP_004654376.1 946429 R 761193 CDS YP_004654377.1 338210330 10869324 947233..948756 1 NC_015703.1 PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family; InterPro IPR006153; KEGG: lby:Lbys_1407 sodium/proton antiporter, cpa1 family; PFAM: Cation/H+ exchanger; SPTR: Na(+)/H(+) exchanger family protein; protease Do 948756 10869324 Runsl_0807 Runella slithyformis DSM 19594 protease Do YP_004654377.1 947233 D 761193 CDS YP_004654378.1 338210331 10869325 948861..950033 1 NC_015703.1 PFAM: Sodium/hydrogen exchanger family; COGs: COG0673 dehydrogenase and related protein; InterPro IPR013149:IPR000683; KEGG: pdi:BDI_1580 zinc-binding dehydrogenase; PFAM: Oxidoreductase, N-terminal; Alcohol dehydrogenase, zinc-binding; SPTR: Oxidoreductase; sodium/hydrogen exchanger 950033 10869325 Runsl_0808 Runella slithyformis DSM 19594 sodium/hydrogen exchanger YP_004654378.1 948861 D 761193 CDS YP_004654379.1 338210332 10869326 complement(950125..952263) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Zinc-binding dehydrogenase; KEGG: sli:Slin_0251 hypothetical protein; SPTR: uncharacterized protein; oxidoreductase domain-containing protein 952263 10869326 Runsl_0809 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004654379.1 950125 R 761193 CDS YP_004654380.1 338210333 10869327 complement(952451..952675) 1 NC_015703.1 PFAM: Protein of unknown function (DUF2905); InterPro IPR004740; KEGG: sli:Slin_0520 nucleoside:H symporter; PFAM: Nucleoside:H+ symporter; SPTR: Nucleoside:H symporter; hypothetical protein 952675 10869327 Runsl_0810 Runella slithyformis DSM 19594 hypothetical protein YP_004654380.1 952451 R 761193 CDS YP_004654381.1 338210334 10869328 952760..953956 1 NC_015703.1 PFAM: Nucleoside H+ symporter; TIGRFAM: nucleoside transporter; COGs: COG0708 Exonuclease III; InterPro IPR005135:IPR000097:IPR004808; KEGG: dfe:Dfer_2986 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: Exodeoxyribonuclease III; SPTR: Exodeoxyribonuclease III Xth; TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; nucleoside:H symporter 953956 10869328 Runsl_0811 Runella slithyformis DSM 19594 nucleoside:H symporter YP_004654381.1 952760 D 761193 CDS YP_004654382.1 338210335 10869329 954073..954846 1 NC_015703.1 PFAM: Endonuclease/Exonuclease/phosphatase; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth); exodeoxyribonuclease III 954846 10869329 Runsl_0812 Runella slithyformis DSM 19594 exodeoxyribonuclease III YP_004654382.1 954073 D 761193 CDS YP_004654383.1 338210336 10869330 complement(954780..954944) 1 NC_015703.1 InterPro IPR001440:IPR013105:IPR019734; KEGG: dfe:Dfer_3772 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; hypothetical protein 954944 10869330 Runsl_0813 Runella slithyformis DSM 19594 hypothetical protein YP_004654383.1 954780 R 761193 CDS YP_004654384.1 338210337 10869331 955023..956738 1 NC_015703.1 PFAM: Tetratricopeptide repeat; KEGG: sli:Slin_4397 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 956738 10869331 Runsl_0814 Runella slithyformis DSM 19594 hypothetical protein YP_004654384.1 955023 D 761193 CDS YP_004654385.1 338210338 10869332 956766..957728 1 NC_015703.1 COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR016047; KEGG: sli:Slin_4398 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23; hypothetical protein 957728 10869332 Runsl_0815 Runella slithyformis DSM 19594 hypothetical protein YP_004654385.1 956766 D 761193 CDS YP_004654386.1 338210339 10869333 957761..959212 1 NC_015703.1 PFAM: Peptidase M23; COGs: COG0413 Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; InterPro IPR003700; KEGG: dfe:Dfer_3775 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; PRIAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; SPTR: 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: Ketopantoate hydroxymethyltransferase; peptidase M23 959212 10869333 Runsl_0816 Runella slithyformis DSM 19594 peptidase M23 YP_004654386.1 957761 D 761193 CDS YP_004654389.1 338210340 10869336 961117..961422 1 NC_015703.1 KEGG: dfe:Dfer_3812 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 961422 10869336 Runsl_0819 Runella slithyformis DSM 19594 hypothetical protein YP_004654389.1 961117 D 761193 CDS YP_004654390.1 338210341 10869337 complement(961417..961596) 1 NC_015703.1 COGs: COG0323 DNA mismatch repair enzyme (predicted ATPase); HAMAP: DNA mismatch repair protein mutL; InterPro IPR003594:IPR013507:IPR014790:IPR014763; KEGG: dfe:Dfer_3811 DNA mismatch repair protein MutL; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATP-binding region, ATPase-like; SPTR: DNA mismatch repair protein mutL; TIGRFAM: DNA mismatch repair protein, N-terminal; hypothetical protein 961596 10869337 Runsl_0820 Runella slithyformis DSM 19594 hypothetical protein YP_004654390.1 961417 R 761193 CDS YP_004654391.1 338210342 10869338 961890..963779 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; MutL C terminal dimerisation domain; DNA mismatch repair protein, C-terminal domain; TIGRFAM: DNA mismatch repair protein MutL; InterPro IPR002610; KEGG: dfe:Dfer_3810 rhomboid family protein; PFAM: Peptidase S54, rhomboid; SPTR: Rhomboid family protein; DNA mismatch repair protein mutL 963779 10869338 Runsl_0821 Runella slithyformis DSM 19594 DNA mismatch repair protein mutL YP_004654391.1 961890 D 761193 CDS YP_004654392.1 338210343 10869339 963886..964665 1 NC_015703.1 PFAM: Rhomboid family; COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: dfe:Dfer_3809 rhomboid family protein; PFAM: Peptidase S54, rhomboid; SPTR: Rhomboid family protein; rhomboid family protein 964665 10869339 Runsl_0822 Runella slithyformis DSM 19594 rhomboid family protein YP_004654392.1 963886 D 761193 CDS YP_004654393.1 338210344 10869340 964780..965697 1 NC_015703.1 PFAM: Rhomboid family; COGs: COG1154 Deoxyxylulose-5-phosphate synthase; HAMAP: Deoxyxylulose-5-phosphate synthase; InterPro IPR005477:IPR005475:IPR005476; KEGG: sli:Slin_5566 deoxyxylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase; SPTR: 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: Deoxyxylulose-5-phosphate synthase; rhomboid family protein 965697 10869340 Runsl_0823 Runella slithyformis DSM 19594 rhomboid family protein YP_004654393.1 964780 D 761193 CDS YP_004654394.1 338210345 10869341 965815..967752 1 NC_015703.1 PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase; COGs: COG1301 Na+/H+-dicarboxylate symporter; InterPro IPR001991; KEGG: sli:Slin_1737 sodium:dicarboxylate symporter; PFAM: Sodium:dicarboxylate symporter; SPTR: Sodium:dicarboxylate symporter; 1-deoxy-D-xylulose-5-phosphate synthase 967752 10869341 Runsl_0824 Runella slithyformis DSM 19594 1-deoxy-D-xylulose-5-phosphate synthase YP_004654394.1 965815 D 761193 CDS YP_004654395.1 338210346 10869342 968016..969245 1 NC_015703.1 PFAM: Sodium:dicarboxylate symporter family; InterPro IPR018713; KEGG: sli:Slin_2259 hypothetical protein; PFAM: Protein of unknown function DUF2236; SPTR: uncharacterized protein; sodium:dicarboxylate symporter 969245 10869342 Runsl_0825 Runella slithyformis DSM 19594 sodium:dicarboxylate symporter YP_004654395.1 968016 D 761193 CDS YP_004654396.1 338210347 10869343 complement(969324..970220) 1 NC_015703.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2236); InterPro IPR000835; KEGG: cpi:Cpin_4956 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; hypothetical protein 970220 10869343 Runsl_0826 Runella slithyformis DSM 19594 hypothetical protein YP_004654396.1 969324 R 761193 CDS YP_004654397.1 338210348 10869344 complement(970257..970901) 1 NC_015703.1 InterPro IPR012910:IPR000531; KEGG: mtt:Ftrac_1466 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; regulatory protein MarR 970901 10869344 Runsl_0827 Runella slithyformis DSM 19594 regulatory protein MarR YP_004654397.1 970257 R 761193 CDS YP_004654398.1 338210349 10869345 971009..973471 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; InterPro IPR012307:IPR006311; KEGG: dfe:Dfer_0469 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; TonB-dependent receptor 973471 10869345 Runsl_0828 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004654398.1 971009 D 761193 CDS YP_004654399.1 338210350 10869346 complement(973594..974529) 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; KEGG: mpn:MPN138 hypothetical protein; SPTR: UPF0134 protein MPN_138; xylose isomerase domain-containing protein 974529 10869346 Runsl_0829 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004654399.1 973594 R 761193 CDS YP_004654400.1 338210351 10869347 complement(974558..974902) 1 NC_015703.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR011659:IPR001375; KEGG: sli:Slin_5739 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein; hypothetical protein 974902 10869347 Runsl_0830 Runella slithyformis DSM 19594 hypothetical protein YP_004654400.1 974558 R 761193 CDS YP_004654401.1 338210352 10869348 complement(974958..977177) 1 NC_015703.1 PFAM: Prolyl oligopeptidase; WD40-like Beta Propeller Repeat; COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: sli:Slin_2560 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PRIAM: N-carbamoylputrescine amidase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; peptidase S9 prolyl oligopeptidase active site domain-containing protein 977177 10869348 Runsl_0831 Runella slithyformis DSM 19594 peptidase S9 prolyl oligopeptidase active site domain-containing protein YP_004654401.1 974958 R 761193 CDS YP_004654402.1 338210353 10869349 977332..978201 1 NC_015703.1 PFAM: Carbon-nitrogen hydrolase; TIGRFAM: N-carbamoylputrescine amidase; COGs: COG0139 Phosphoribosyl-AMP cyclohydrolase; HAMAP: Histidine biosynthesis bifunctional protein hisIE; InterPro IPR002496:IPR008179; KEGG: sli:Slin_5481 phosphoribosyl-ATP diphosphatase; PFAM: Phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphohydrolase; PRIAM: Phosphoribosyl-AMP cyclohydrolase., Phosphoribosyl-ATP diphosphatase; SPTR: Phosphoribosyl-ATP diphosphatase; TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; N-carbamoylputrescine amidase 978201 10869349 Runsl_0832 Runella slithyformis DSM 19594 N-carbamoylputrescine amidase YP_004654402.1 977332 D 761193 CDS YP_004654403.1 338210354 10869350 complement(978287..978886) 1 NC_015703.1 PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; Phosphoribosyl-AMP cyclohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR002078:IPR003593; KEGG: sli:Slin_3615 two component, sigma54 specific, fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; SPTR: two component, sigma54 specific, transcriptional regulator, Fis family; histidine biosynthesis bifunctional protein hisIE 978886 10869350 Runsl_0833 Runella slithyformis DSM 19594 histidine biosynthesis bifunctional protein hisIE YP_004654403.1 978287 R 761193 CDS YP_004654404.1 338210355 10869351 complement(978989..980152) 1 NC_015703.1 PFAM: Response regulator receiver domain; Sigma-54 interaction domain; two component, sigma-54 specific, transcriptional regulator 980152 10869351 Runsl_0834 Runella slithyformis DSM 19594 two component, sigma-54 specific, transcriptional regulator YP_004654404.1 978989 R 761193 CDS YP_004654405.1 338210356 10869352 complement(980167..980289) 1 NC_015703.1 COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130; KEGG: sli:Slin_4816 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; SPTR: Peptidyl-prolyl cis-trans isomerase; hypothetical protein 980289 10869352 Runsl_0835 Runella slithyformis DSM 19594 hypothetical protein YP_004654405.1 980167 R 761193 CDS YP_004654406.1 338210357 10869353 complement(980356..981054) 1 NC_015703.1 PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; COGs: COG1078 HD superfamily phosphohydrolase; InterPro IPR006674:IPR003607; KEGG: sli:Slin_6492 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region; SPTR: Metal dependent phosphohydrolase; cyclophilin type peptidyl-prolyl cis-trans isomerase 981054 10869353 Runsl_0836 Runella slithyformis DSM 19594 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_004654406.1 980356 R 761193 CDS YP_004654407.1 338210358 10869354 981125..982357 1 NC_015703.1 PFAM: HD domain; COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; InterPro IPR007691:IPR020573:IPR001451; KEGG: sli:Slin_6493 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat; SPTR: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; metal dependent phosphohydrolase 982357 10869354 Runsl_0837 Runella slithyformis DSM 19594 metal dependent phosphohydrolase YP_004654407.1 981125 D 761193 CDS YP_004654408.1 338210359 10869355 982368..983402 1 NC_015703.1 PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Bacterial transferase hexapeptide (three repeats); TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; COGs: COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; HAMAP: (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; UDP-3-O-acyl N-acetylglucosamine deacetylase; InterPro IPR004463:IPR013114:IPR010084; KEGG: sli:Slin_6494 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; SPTR: Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase FabZ; TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; UDP-3-O-acyl N-acetylglucosamine deacetylase; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 983402 10869355 Runsl_0838 Runella slithyformis DSM 19594 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase YP_004654408.1 982368 D 761193 CDS YP_004654409.1 338210360 10869356 983408..984802 1 NC_015703.1 PFAM: FabA-like domain; UDP-3-O-acyl N-acetylglycosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ; COGs: COG1043 Acyl-(acyl carrier protein); InterPro IPR001451:IPR010137; KEGG: sli:Slin_6495 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosa MinE O-acyltransferase; PRIAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgluc osamineO-acyltransferase; SPTR: Acyl-(Acyl-carrier-protein)--UDP-N-acetylglucosa mine O-acyltransferase; TIGRFAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgl ucosamineO-acyltransferase; (3R)-hydroxymyristoyl-ACP dehydratase 984802 10869356 Runsl_0839 Runella slithyformis DSM 19594 (3R)-hydroxymyristoyl-ACP dehydratase YP_004654409.1 983408 D 761193 CDS YP_004654410.1 338210361 10869357 984899..985702 1 NC_015703.1 PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: ote:Oter_1907 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase 985702 10869357 Runsl_0840 Runella slithyformis DSM 19594 acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase YP_004654410.1 984899 D 761193 CDS YP_004654411.1 338210362 10869358 986483..987286 1 NC_015703.1 PFAM: Polysaccharide deacetylase; InterPro IPR003088:IPR013428:IPR013427; KEGG: pbs:Plabr_3239 membrane-bound dehydrogenase domain protein; PFAM: Cytochrome c, class I; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; haem-binding region; polysaccharide deacetylase 987286 10869358 Runsl_0841 Runella slithyformis DSM 19594 polysaccharide deacetylase YP_004654411.1 986483 D 761193 CDS YP_004654412.1 338210363 10869359 987459..990491 1 NC_015703.1 PFAM: Cytochrome c; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type; COGs: COG0031 Cysteine synthase; InterPro IPR001926:IPR005858:IPR005856; KEGG: sli:Slin_5857 cysteine synthase B; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Cysteine synthase; SPTR: Cysteine synthase; TIGRFAM: Cysteine synthase B; Cysteine synthase K/M; membrane-bound dehydrogenase domain-containing protein 990491 10869359 Runsl_0842 Runella slithyformis DSM 19594 membrane-bound dehydrogenase domain-containing protein YP_004654412.1 987459 D 761193 CDS YP_004654413.1 338210364 10869360 complement(990583..991455) 1 NC_015703.1 PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthases; cysteine synthase B; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; KEGG: sli:Slin_5446 polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein; cysteine synthase B 991455 10869360 Runsl_0843 Runella slithyformis DSM 19594 cysteine synthase B YP_004654413.1 990583 R 761193 CDS YP_004654414.1 338210365 10869361 991654..993177 1 NC_015703.1 InterPro IPR020018; KEGG: sli:Slin_5969 gliding motility-associated lipoprotein GldH; SPTR: Gliding motility-associated lipoprotein GldH; TIGRFAM: Gliding motility-associated lipoprotein, GldH; polysaccharide biosynthesis protein 993177 10869361 Runsl_0844 Runella slithyformis DSM 19594 polysaccharide biosynthesis protein YP_004654414.1 991654 D 761193 CDS YP_004654415.1 338210366 10869362 993201..993710 1 NC_015703.1 TIGRFAM: gliding motility-associated lipoprotein GldH; COGs: COG2802 Uncharacterized protein similar to the N-terminal domain of Lon protease; InterPro IPR003111; KEGG: sli:Slin_5613 peptidase S16; PFAM: Peptidase S16, lon N-terminal; SMART: Peptidase S16, lon N-terminal; SPTR: Peptidase S16 lon domain protein; gliding motility-associated lipoprotein GldH 993710 10869362 Runsl_0845 Runella slithyformis DSM 19594 gliding motility-associated lipoprotein GldH YP_004654415.1 993201 D 761193 CDS YP_004654416.1 338210367 10869363 993767..994396 1 NC_015703.1 PFAM: ATP-dependent protease La (LON) domain; COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125; KEGG: zpr:ZPR_1903 guanine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; PRIAM: Guanine deaminase; SPTR: Guanine deaminase; peptidase S16 lon domain-containing protein 994396 10869363 Runsl_0846 Runella slithyformis DSM 19594 peptidase S16 lon domain-containing protein YP_004654416.1 993767 D 761193 CDS YP_004654417.1 338210368 10869364 complement(994580..995053) 1 NC_015703.1 PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: aba:Acid345_4345 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; PRIAM: Sarcosine oxidase; SPTR: FAD dependent oxidoreductase; guanine deaminase 995053 10869364 Runsl_0847 Runella slithyformis DSM 19594 guanine deaminase YP_004654417.1 994580 R 761193 CDS YP_004654418.1 338210369 10869365 complement(995060..996253) 1 NC_015703.1 PFAM: FAD dependent oxidoreductase; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: cts:Ctha_2148 group 1 glycosyl transferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyltransferase; sarcosine oxidase 996253 10869365 Runsl_0848 Runella slithyformis DSM 19594 sarcosine oxidase YP_004654418.1 995060 R 761193 CDS YP_004654419.1 338210370 10869366 996339..997568 1 NC_015703.1 PFAM: Glycosyl transferases group 1; COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: sli:Slin_0708 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; group 1 glycosyl transferase 997568 10869366 Runsl_0849 Runella slithyformis DSM 19594 group 1 glycosyl transferase YP_004654419.1 996339 D 761193 CDS YP_004654420.1 338210371 10869367 997612..998061 1 NC_015703.1 PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_6620 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; PRIAM: Glucomannan 4-beta-mannosyltransferase; SPTR: Glycosyl transferase 2; phenylacetic acid degradation-like protein 998061 10869367 Runsl_0850 Runella slithyformis DSM 19594 phenylacetic acid degradation-like protein YP_004654420.1 997612 D 761193 CDS YP_004654421.1 338210372 10869368 998099..999562 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG0227 Ribosomal protein L28; HAMAP: Ribosomal protein L28; InterPro IPR001383; KEGG: sli:Slin_6556 ribosomal protein L28; PFAM: Ribosomal protein L28; SPTR: 50S ribosomal protein L28; TIGRFAM: Ribosomal protein L28; glucomannan 4-beta-mannosyltransferase 999562 10869368 Runsl_0851 Runella slithyformis DSM 19594 glucomannan 4-beta-mannosyltransferase YP_004654421.1 998099 D 761193 CDS YP_004654422.1 338210373 10869369 complement(999668..999892) 1 NC_015703.1 PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: dfe:Dfer_5645 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; SPTR: Two component transcriptional regulator, LytTR family; 50S ribosomal protein L28 999892 10869369 Runsl_0852 Runella slithyformis DSM 19594 50S ribosomal protein L28 YP_004654422.1 999668 R 761193 CDS YP_004654423.1 338210374 10869370 complement(1000012..1000395) 1 NC_015703.1 PFAM: LytTr DNA-binding domain; COGs: COG2255 Holliday junction resolvasome helicase subunit; HAMAP: DNA helicase, Holliday junction RuvB type; InterProIPR004605:IPR008824:IPR003959:IPR008823:IPR 003593; KEGG: dfe:Dfer_3690 Holliday junction DNA helicase RuvB; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: Holliday junction ATP-dependent DNA helicase ruvB; TIGRFAM: DNA helicase, Holliday junction RuvB type; response regulator receiver protein 1000395 10869370 Runsl_0853 Runella slithyformis DSM 19594 response regulator receiver protein YP_004654423.1 1000012 R 761193 CDS YP_004654424.1 338210375 10869371 complement(1000671..1001702) 1 NC_015703.1 PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit; KEGG: ppd:Ppro_2108 hypothetical protein; SPTR: uncharacterized protein; manually curated; Holliday junction DNA helicase subunit RuvB 1001702 10869371 Runsl_0854 Runella slithyformis DSM 19594 Holliday junction DNA helicase subunit RuvB YP_004654424.1 1000671 R 761193 CDS YP_004654425.1 338210376 10869373 complement(1002479..1006120) 1 NC_015703.1 PFAM: PKD domain; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sli:Slin_3491 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; PKD domain-containing protein 1006120 10869373 Runsl_0856 Runella slithyformis DSM 19594 PKD domain-containing protein YP_004654425.1 1002479 R 761193 CDS YP_004654426.1 338210377 10869374 complement(1006337..1007185) 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; InterPro IPR011701; KEGG: sli:Slin_2840 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; xylose isomerase domain-containing protein 1007185 10869374 Runsl_0857 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004654426.1 1006337 R 761193 CDS YP_004654427.1 338210378 10869375 complement(1007289..1008518) 1 NC_015703.1 PFAM: Major Facilitator Superfamily; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: sli:Slin_2839 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; major facilitator superfamily protein 1008518 10869375 Runsl_0858 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004654427.1 1007289 R 761193 CDS YP_004654428.1 338210379 10869376 complement(1008878..1010179) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_2838 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; oxidoreductase domain-containing protein 1010179 10869376 Runsl_0859 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004654428.1 1008878 R 761193 CDS YP_004654429.1 338210380 10869377 complement(1010583..1011398) 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155; KEGG: sli:Slin_2837 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; SPTR: NADH:flavin oxidoreductase/NADH oxidase; 3-oxoacyl-ACP reductase 1011398 10869377 Runsl_0860 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004654429.1 1010583 R 761193 CDS YP_004654430.1 338210381 10869378 complement(1011409..1012854) 1 NC_015703.1 PFAM: NADH:flavin oxidoreductase / NADH oxidase; InterPro IPR010905; KEGG: sli:Slin_2836 hypothetical protein; PFAM: Glycosyl hydrolase, family 88; SPTR: uncharacterized protein; NADH:flavin oxidoreductase 1012854 10869378 Runsl_0861 Runella slithyformis DSM 19594 NADH:flavin oxidoreductase YP_004654430.1 1011409 R 761193 CDS YP_004654431.1 338210382 10869379 complement(1012977..1014374) 1 NC_015703.1 PFAM: Glycosyl Hydrolase 88; COGs: COG2610 H+/gluconate symporter and related permease; InterPro IPR003474; KEGG: cdf:CD2812 gluconate permease; PFAM: Gluconate transporter; SPTR: gluconate permease; TIGRFAM: Gluconate transporter; glycoside hydrolase 1014374 10869379 Runsl_0862 Runella slithyformis DSM 19594 glycoside hydrolase YP_004654431.1 1012977 R 761193 CDS YP_004654432.1 338210383 10869380 complement(1014536..1015864) 1 NC_015703.1 PFAM: GntP family permease; TIGRFAM: gluconate transporter; KEGG: dfe:Dfer_2216 hypothetical protein; SPTR: uncharacterized protein; gluconate transporter 1015864 10869380 Runsl_0863 Runella slithyformis DSM 19594 gluconate transporter YP_004654432.1 1014536 R 761193 CDS YP_004654433.1 338210384 10869381 complement(1015951..1017183) 1 NC_015703.1 PFAM: Polysaccharide pyruvyl transferase; COGs: COG2327 conserved hypothetical protein; KEGG: phe:Phep_2607 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1017183 10869381 Runsl_0864 Runella slithyformis DSM 19594 hypothetical protein YP_004654433.1 1015951 R 761193 CDS YP_004654434.1 338210385 10869382 complement(1017234..1018568) 1 NC_015703.1 PFAM: Polysaccharide pyruvyl transferase; InterPro IPR012944; KEGG: dfe:Dfer_2218 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; hypothetical protein 1018568 10869382 Runsl_0865 Runella slithyformis DSM 19594 hypothetical protein YP_004654434.1 1017234 R 761193 CDS YP_004654435.1 338210386 10869383 complement(1018656..1020353) 1 NC_015703.1 PFAM: SusD family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_2219 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; RagB/SusD domain-containing protein 1020353 10869383 Runsl_0866 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004654435.1 1018656 R 761193 CDS YP_004654436.1 338210387 10869384 complement(1020366..1023740) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: sli:Slin_6285 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; TonB-dependent receptor plug 1023740 10869384 Runsl_0867 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004654436.1 1020366 R 761193 CDS YP_004654437.1 338210388 10869385 complement(1023759..1024754) 1 NC_015703.1 PFAM: FecR protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284:IPR014327; KEGG: sli:Slin_6284 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; anti-FecI sigma factor FecR 1024754 10869385 Runsl_0868 Runella slithyformis DSM 19594 anti-FecI sigma factor FecR YP_004654437.1 1023759 R 761193 CDS YP_004654438.1 338210389 10869386 complement(1024815..1025498) 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: pbs:Plabr_3889 lipase/esterase; SPTR: Probable lipase/esterase; ECF subfamily RNA polymerase sigma-24 subunit 1025498 10869386 Runsl_0869 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004654438.1 1024815 R 761193 CDS YP_004654439.1 338210390 10869387 1025738..1026610 1 NC_015703.1 PFAM: alpha/beta hydrolase fold; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR013428; KEGG: dfe:Dfer_4984 membrane-bound dehydrogenase domain protein; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; lipase/esterase 1026610 10869387 Runsl_0870 Runella slithyformis DSM 19594 lipase/esterase YP_004654439.1 1025738 D 761193 CDS YP_004654440.1 338210391 10869388 complement(1026883..1030035) 1 NC_015703.1 PFAM: Cytochrome c; Membrane bound L-sorbosone dehydrogenase; TIGRFAM: membrane-bound dehydrogenase domain; KEGG: sli:Slin_1261 hypothetical protein; SPTR: uncharacterized protein; membrane-bound dehydrogenase domain-containing protein 1030035 10869388 Runsl_0871 Runella slithyformis DSM 19594 membrane-bound dehydrogenase domain-containing protein YP_004654440.1 1026883 R 761193 CDS YP_004654441.1 338210392 10869389 complement(1030085..1030984) 1 NC_015703.1 PFAM: Trehalose utilisation; InterPro IPR012944; KEGG: dfe:Dfer_4718 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; hypothetical protein 1030984 10869389 Runsl_0872 Runella slithyformis DSM 19594 hypothetical protein YP_004654441.1 1030085 R 761193 CDS YP_004654442.1 338210393 10869390 complement(1031173..1032678) 1 NC_015703.1 PFAM: SusD family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR011662:IPR012910:IPR000531; KEGG: dfe:Dfer_4717 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; RagB/SusD domain-containing protein 1032678 10869390 Runsl_0873 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004654442.1 1031173 R 761193 CDS YP_004654443.1 338210394 10869391 complement(1032708..1036139) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: sli:Slin_6566 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; TonB-dependent receptor plug 1036139 10869391 Runsl_0874 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004654443.1 1032708 R 761193 CDS YP_004654444.1 338210395 10869392 complement(1036396..1037472) 1 NC_015703.1 PFAM: FecR protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_6565 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; anti-FecI sigma factor FecR 1037472 10869392 Runsl_0875 Runella slithyformis DSM 19594 anti-FecI sigma factor FecR YP_004654444.1 1036396 R 761193 CDS YP_004654445.1 338210396 10869393 complement(1037528..1038118) 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: dfe:Dfer_0191 hypothetical protein; SPTR: uncharacterized protein; ECF subfamily RNA polymerase sigma-24 subunit 1038118 10869393 Runsl_0876 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004654445.1 1037528 R 761193 CDS YP_004654446.1 338210397 10869394 1038483..1039223 1 NC_015703.1 hypothetical protein 1039223 10869394 Runsl_0877 Runella slithyformis DSM 19594 hypothetical protein YP_004654446.1 1038483 D 761193 CDS YP_004654447.1 338210398 10869395 complement(1039253..1039795) 1 NC_015703.1 KEGG: dfe:Dfer_4617 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1039795 10869395 Runsl_0878 Runella slithyformis DSM 19594 hypothetical protein YP_004654447.1 1039253 R 761193 CDS YP_004654448.1 338210399 10869396 1039920..1040954 1 NC_015703.1 hypothetical protein 1040954 10869396 Runsl_0879 Runella slithyformis DSM 19594 hypothetical protein YP_004654448.1 1039920 D 761193 CDS YP_004654449.1 338210400 10869397 complement(1041034..1041531) 1 NC_015703.1 COGs: COG3622 Hydroxypyruvate isomerase; InterPro IPR012307:IPR006311; KEGG: sli:Slin_3461 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; hypothetical protein 1041531 10869397 Runsl_0880 Runella slithyformis DSM 19594 hypothetical protein YP_004654449.1 1041034 R 761193 CDS YP_004654450.1 338210401 10869398 complement(1042018..1042905) 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: sli:Slin_3971 hypothetical protein; SPTR: uncharacterized protein; xylose isomerase domain-containing protein 1042905 10869398 Runsl_0881 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004654450.1 1042018 R 761193 CDS YP_004654451.1 338210402 10869399 complement(1043231..1044946) 1 NC_015703.1 InterPro IPR001647; KEGG: dfe:Dfer_2561 transcriptional regulator, TetR family; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; hypothetical protein 1044946 10869399 Runsl_0882 Runella slithyformis DSM 19594 hypothetical protein YP_004654451.1 1043231 R 761193 CDS YP_004654452.1 338210403 10869400 1045268..1045966 1 NC_015703.1 PFAM: Bacterial regulatory proteins, tetR family; COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839; KEGG: dfe:Dfer_2557 glycine C-acetyltransferase; PFAM: Aminotransferase, class I/II; PRIAM: Glycine C-acetyltransferase; SPTR: Glycine C-acetyltransferase; TetR family transcriptional regulator 1045966 10869400 Runsl_0883 Runella slithyformis DSM 19594 TetR family transcriptional regulator YP_004654452.1 1045268 D 761193 CDS YP_004654453.1 338210404 10869401 1046121..1047326 1 NC_015703.1 PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase; KEGG: dfe:Dfer_2556 hypothetical protein; SPTR: uncharacterized protein; glycine C-acetyltransferase 1047326 10869401 Runsl_0884 Runella slithyformis DSM 19594 glycine C-acetyltransferase YP_004654453.1 1046121 D 761193 CDS YP_004654454.1 338210405 10869402 1047323..1048444 1 NC_015703.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_2555 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; hypothetical protein 1048444 10869402 Runsl_0885 Runella slithyformis DSM 19594 hypothetical protein YP_004654454.1 1047323 D 761193 CDS YP_004654455.1 338210406 10869403 1048441..1049436 1 NC_015703.1 PFAM: NAD dependent epimerase/dehydratase; KEGG: dfe:Dfer_2554 hypothetical protein; SPTR: uncharacterized protein; NAD-dependent epimerase/dehydratase 1049436 10869403 Runsl_0886 Runella slithyformis DSM 19594 NAD-dependent epimerase/dehydratase YP_004654455.1 1048441 D 761193 CDS YP_004654456.1 338210407 10869404 1049507..1052101 1 NC_015703.1 COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); KEGG: dfe:Dfer_2553 nucleoside-diphosphate-sugar pyrophosphorylase; SPTR: nucleoside-diphosphate-sugar pyrophosphorylase; hypothetical protein 1052101 10869404 Runsl_0887 Runella slithyformis DSM 19594 hypothetical protein YP_004654456.1 1049507 D 761193 CDS YP_004654457.1 338210408 10869405 1052236..1052970 1 NC_015703.1 PFAM: Nucleotidyl transferase; KEGG: dfe:Dfer_2552 hypothetical protein; SPTR: uncharacterized protein; nucleoside-diphosphate-sugar pyrophosphorylase 1052970 10869405 Runsl_0888 Runella slithyformis DSM 19594 nucleoside-diphosphate-sugar pyrophosphorylase YP_004654457.1 1052236 D 761193 CDS YP_004654458.1 338210409 10869406 1052970..1053839 1 NC_015703.1 COGs: COG0558 Phosphatidylglycerophosphate synthase; InterPro IPR000462; KEGG: dfe:Dfer_2551 CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-alcohol phosphatidyltransferase; hypothetical protein 1053839 10869406 Runsl_0889 Runella slithyformis DSM 19594 hypothetical protein YP_004654458.1 1052970 D 761193 CDS YP_004654459.1 338210410 10869407 1053839..1054786 1 NC_015703.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dfe:Dfer_2550 hypothetical protein; SPTR: uncharacterized protein; CDP-alcohol phosphatidyltransferase 1054786 10869407 Runsl_0890 Runella slithyformis DSM 19594 CDP-alcohol phosphatidyltransferase YP_004654459.1 1053839 D 761193 CDS YP_004654460.1 338210411 10869408 1054788..1055819 1 NC_015703.1 PFAM: Uncharacterised protein family (UPF0104); COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834:IPR006402; KEGG: dfe:Dfer_2549 haloacid dehalogenase domain protein hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Haloacid dehalogenase domain protein hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; hypothetical protein 1055819 10869408 Runsl_0891 Runella slithyformis DSM 19594 hypothetical protein YP_004654460.1 1054788 D 761193 CDS YP_004654461.1 338210412 10869409 1055855..1056565 1 NC_015703.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; COGs: COG0524 Sugar kinase ribokinase; InterPro IPR011611; KEGG: dfe:Dfer_2548 PfkB domain protein; PFAM: Carbohydrate/purine kinase; SPTR: PfkB domain protein; HAD superfamily hydrolase 1056565 10869409 Runsl_0892 Runella slithyformis DSM 19594 HAD superfamily hydrolase YP_004654461.1 1055855 D 761193 CDS YP_004654462.1 338210413 10869410 1056611..1057537 1 NC_015703.1 PFAM: pfkB family carbohydrate kinase; KEGG: dfe:Dfer_2547 hypothetical protein; SPTR: uncharacterized protein; PfkB domain-containing protein 1057537 10869410 Runsl_0893 Runella slithyformis DSM 19594 PfkB domain-containing protein YP_004654462.1 1056611 D 761193 CDS YP_004654463.1 338210414 10869411 1057566..1058132 1 NC_015703.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_0042 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; hypothetical protein 1058132 10869411 Runsl_0894 Runella slithyformis DSM 19594 hypothetical protein YP_004654463.1 1057566 D 761193 CDS YP_004654464.1 338210415 10869412 1058623..1059969 1 NC_015703.1 PFAM: Outer membrane efflux protein; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_0041 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; outer membrane efflux protein 1059969 10869412 Runsl_0895 Runella slithyformis DSM 19594 outer membrane efflux protein YP_004654464.1 1058623 D 761193 CDS YP_004654465.1 338210416 10869413 1059990..1061102 1 NC_015703.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036:IPR004764; KEGG: dfe:Dfer_0040 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: Acriflavin resistance protein; SPTR: Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; RND family efflux transporter MFP subunit 1061102 10869413 Runsl_0896 Runella slithyformis DSM 19594 RND family efflux transporter MFP subunit YP_004654465.1 1059990 D 761193 CDS YP_004654466.1 338210417 10869414 1061155..1064334 1 NC_015703.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; InterPro IPR019861; KEGG: dfe:Dfer_3688 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 1064334 10869414 Runsl_0897 Runella slithyformis DSM 19594 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_004654466.1 1061155 D 761193 CDS YP_004654467.1 338210418 10869415 1064548..1065609 1 NC_015703.1 PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein; hypothetical protein 1065609 10869415 Runsl_0898 Runella slithyformis DSM 19594 hypothetical protein YP_004654467.1 1064548 D 761193 CDS YP_004654468.1 338210419 10869416 complement(1065720..1066079) 1 NC_015703.1 InterPro IPR007842; KEGG: geb:GM18_2404 HEPN domain-containing protein; PFAM: HEPN; SPTR: HEPN domain protein; hypothetical protein 1066079 10869416 Runsl_0899 Runella slithyformis DSM 19594 hypothetical protein YP_004654468.1 1065720 R 761193 CDS YP_004654469.1 338210420 10869417 complement(1066058..1066477) 1 NC_015703.1 PFAM: HEPN domain; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: sli:Slin_4817 sigma 54 interacting domain protein; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Sigma 54 interacting domain protein; HEPN domain-containing protein 1066477 10869417 Runsl_0900 Runella slithyformis DSM 19594 HEPN domain-containing protein YP_004654469.1 1066058 R 761193 CDS YP_004654470.1 338210421 10869418 complement(1066702..1067328) 1 NC_015703.1 PFAM: ABC transporter; KEGG: sli:Slin_5161 hypothetical protein; SPTR: uncharacterized protein; phosphonate-transporting ATPase 1067328 10869418 Runsl_0901 Runella slithyformis DSM 19594 phosphonate-transporting ATPase YP_004654470.1 1066702 R 761193 CDS YP_004654471.1 338210422 10869419 complement(1067419..1068588) 1 NC_015703.1 COGs: COG1435 Thymidine kinase; HAMAP: Thymidine kinase, subgroup; InterPro IPR020634:IPR001267; KEGG: dfe:Dfer_4396 thymidine kinase; PFAM: Thymidine kinase; PRIAM: Thymidine kinase; SPTR: Thymidine kinase; hypothetical protein 1068588 10869419 Runsl_0902 Runella slithyformis DSM 19594 hypothetical protein YP_004654471.1 1067419 R 761193 CDS YP_004654472.1 338210423 10869420 1068715..1069302 1 NC_015703.1 PFAM: Thymidine kinase; KEGG: pdi:BDI_1307 hypothetical protein; SPTR: uncharacterized protein; thymidine kinase 1069302 10869420 Runsl_0903 Runella slithyformis DSM 19594 thymidine kinase YP_004654472.1 1068715 D 761193 CDS YP_004654473.1 338210424 10869421 1069341..1070582 1 NC_015703.1 KEGG: shg:Sph21_2321 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1070582 10869421 Runsl_0904 Runella slithyformis DSM 19594 hypothetical protein YP_004654473.1 1069341 D 761193 CDS YP_004654474.1 338210425 10869422 complement(1070584..1070913) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1044); hypothetical protein 1070913 10869422 Runsl_0905 Runella slithyformis DSM 19594 hypothetical protein YP_004654474.1 1070584 R 761193 CDS YP_004654475.1 338210426 10869423 complement(1070903..1071142) 1 NC_015703.1 InterPro IPR005046:IPR011889; KEGG: dfe:Dfer_0502 lipoprotein; PFAM: Protein of unknown function DUF285, lipoprotein predicted; SPTR: Lipoprotein; TIGRFAM: Bacterial surface protein 26-residue repeat; hypothetical protein 1071142 10869423 Runsl_0906 Runella slithyformis DSM 19594 hypothetical protein YP_004654475.1 1070903 R 761193 CDS YP_004654476.1 338210427 10869424 1071522..1073087 1 NC_015703.1 PFAM: Mycoplasma protein of unknown function, DUF285; TIGRFAM: bacterial surface protein 26-residue repeat; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR011659:IPR001375; KEGG: sli:Slin_2704 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein; lipoprotein 1073087 10869424 Runsl_0907 Runella slithyformis DSM 19594 lipoprotein YP_004654476.1 1071522 D 761193 CDS YP_004654477.1 338210428 10869425 1073335..1075308 1 NC_015703.1 PFAM: Prolyl oligopeptidase; WD40-like Beta Propeller Repeat; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650; KEGG: fbc:FB2170_01821 peptidase; PFAM: Peptidase M20, dimerisation; Peptidase M20; SPTR: Peptidase M20; peptidase S9 prolyl oligopeptidase active site domain-containing protein 1075308 10869425 Runsl_0908 Runella slithyformis DSM 19594 peptidase S9 prolyl oligopeptidase active site domain-containing protein YP_004654477.1 1073335 D 761193 CDS YP_004654478.1 338210429 10869426 1075391..1076923 1 NC_015703.1 PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; KEGG: dfe:Dfer_2429 GtrA family protein; SPTR: GtrA family protein; peptidase dimerization domain-containing protein 1076923 10869426 Runsl_0909 Runella slithyformis DSM 19594 peptidase dimerization domain-containing protein YP_004654478.1 1075391 D 761193 CDS YP_004654479.1 338210430 10869427 complement(1077014..1077550) 1 NC_015703.1 PFAM: GtrA-like protein; COGs: COG4219 Antirepressor regulating drug resistance predicted signal transduction N-terminal membrane component; InterPro IPR008756; KEGG: sli:Slin_5187 peptidase M56 BlaR1; PFAM: Peptidase M56, BlaR1; SPTR: Peptidase M56 BlaR1; GtrA family protein 1077550 10869427 Runsl_0910 Runella slithyformis DSM 19594 GtrA family protein YP_004654479.1 1077014 R 761193 CDS YP_004654480.1 338210431 10869428 complement(1077763..1079841) 1 NC_015703.1 PFAM: BlaR1 peptidase M56; COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: sli:Slin_5186 CopY family transcriptional regulator; PFAM: Penicillinase repressor; SPTR: Transcriptional repressor, CopY family; peptidase M56 BlaR1 1079841 10869428 Runsl_0911 Runella slithyformis DSM 19594 peptidase M56 BlaR1 YP_004654480.1 1077763 R 761193 CDS YP_004654481.1 338210432 10869429 complement(1079838..1080206) 1 NC_015703.1 PFAM: Penicillinase repressor; COGs: COG0014 Gamma-glutamyl phosphate reductase; HAMAP: Glutamate-5-semialdehyde dehydrogenase; InterPro IPR012134:IPR000965; KEGG: sli:Slin_0425 gamma-glutamyl phosphate reductase; PRIAM: Glutamate-5-semialdehyde dehydrogenase; SPTR: Gamma-glutamyl phosphate reductase; TIGRFAM: Gamma-glutamyl phosphate reductase GPR; CopY family transcriptional repressor 1080206 10869429 Runsl_0912 Runella slithyformis DSM 19594 CopY family transcriptional repressor YP_004654481.1 1079838 R 761193 CDS YP_004654482.1 338210433 10869430 1080644..1081897 1 NC_015703.1 PFAM: Aldehyde dehydrogenase; TIGRFAM: gamma-glutamyl phosphate reductase; InterPro IPR000834; KEGG: sli:Slin_5441 hypothetical protein; PFAM: Peptidase M14, carboxypeptidase A; SPTR: uncharacterized protein; gamma-glutamyl phosphate reductase 1081897 10869430 Runsl_0913 Runella slithyformis DSM 19594 gamma-glutamyl phosphate reductase YP_004654482.1 1080644 D 761193 CDS YP_004654483.1 338210434 10869431 1081946..1083217 1 NC_015703.1 PFAM: Zinc carboxypeptidase; KEGG: chu:CHU_0434 hypothetical protein; SPTR: Fjo21; peptidase M14 carboxypeptidase A 1083217 10869431 Runsl_0914 Runella slithyformis DSM 19594 peptidase M14 carboxypeptidase A YP_004654483.1 1081946 D 761193 CDS YP_004654484.1 338210435 10869432 1083402..1083761 1 NC_015703.1 PFAM: DoxX; COGs: COG0414 Panthothenate synthetase; HAMAP: Pantoate-beta-alanine ligase; InterPro IPR003721; KEGG: sli:Slin_4462 pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; SPTR: Pantothenate synthetase; TIGRFAM: Pantoate-beta-alanine ligase; hypothetical protein 1083761 10869432 Runsl_0915 Runella slithyformis DSM 19594 hypothetical protein YP_004654484.1 1083402 D 761193 CDS YP_004654485.1 338210436 10869433 1083984..1084868 1 NC_015703.1 PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; COGs: COG0853 Aspartate 1-decarboxylase; HAMAP: Aspartate decarboxylase; InterPro IPR003190; KEGG: sli:Slin_3464 aspartate 1-decarboxylase; PFAM: Aspartate decarboxylase; PRIAM: Aspartate 1-decarboxylase; SPTR: Aspartate 1-decarboxylase; TIGRFAM: Aspartate decarboxylase; pantothenate synthetase 1084868 10869433 Runsl_0916 Runella slithyformis DSM 19594 pantothenate synthetase YP_004654485.1 1083984 D 761193 CDS YP_004654486.1 338210437 10869434 1085041..1085391 1 NC_015703.1 PFAM: Aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase; InterPro IPR005242; KEGG: dfe:Dfer_4554 integral membrane protein; SPTR: Integral membrane protein; aspartate 1-decarboxylase 1085391 10869434 Runsl_0917 Runella slithyformis DSM 19594 aspartate 1-decarboxylase YP_004654486.1 1085041 D 761193 CDS YP_004654487.1 338210438 10869435 1085432..1086475 1 NC_015703.1 PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein; COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR004820:IPR011914:IPR004821; KEGG: dfe:Dfer_4553 RfaE bifunctional protein; PFAM: Cytidylyltransferase; SPTR: RfaE bifunctional protein; TIGRFAM: RfaE bifunctional protein, domain II; Cytidyltransferase-related; hypothetical protein 1086475 10869435 Runsl_0918 Runella slithyformis DSM 19594 hypothetical protein YP_004654487.1 1085432 D 761193 CDS YP_004654488.1 338210439 10869436 1086468..1086953 1 NC_015703.1 PFAM: Cytidylyltransferase; TIGRFAM: rfaE bifunctional protein, domain II; cytidyltransferase-related domain; COGs: COG2738 Zn-dependent protease; InterPro IPR007395; KEGG: lby:Lbys_0458 peptidase membrane zinc metallopeptidase; PFAM: Peptidase, membrane zinc metallopeptidase, SPTR: Peptidase membrane zinc metallopeptidase; rfaE bifunctional protein 1086953 10869436 Runsl_0919 Runella slithyformis DSM 19594 rfaE bifunctional protein YP_004654488.1 1086468 D 761193 CDS YP_004654489.1 338210440 10869437 1087050..1087760 1 NC_015703.1 PFAM: neutral zinc metallopeptidase; InterPro IPR000601; KEGG: dfe:Dfer_2684 PKD domain containing protein; PFAM: PKD; SMART: PKD; SPTR: PKD domain containing protein; peptidase membrane zinc metallopeptidase 1087760 10869437 Runsl_0920 Runella slithyformis DSM 19594 peptidase membrane zinc metallopeptidase YP_004654489.1 1087050 D 761193 CDS YP_004654490.1 338210441 10869438 complement(1087809..1091474) 1 NC_015703.1 COGs: COG0345 Pyrroline-5-carboxylate reductase; InterPro IPR004455:IPR000304; KEGG: sli:Slin_5956 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; PRIAM: Pyrroline-5-carboxylate reductase; SPTR: Pyrroline-5-carboxylate reductase; TIGRFAM: Delta 1-pyrroline-5-carboxylate reductase; PKD domain-containing protein 1091474 10869438 Runsl_0921 Runella slithyformis DSM 19594 PKD domain-containing protein YP_004654490.1 1087809 R 761193 CDS YP_004654491.1 338210442 10869439 complement(1091556..1092359) 1 NC_015703.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR011659:IPR001375; KEGG: phe:Phep_2588 peptidase S9 prolyl oligopeptidase active site domain-containing protein; SPTR: Probable acylaminoacyl-peptidase; pyrroline-5-carboxylate reductase 1092359 10869439 Runsl_0922 Runella slithyformis DSM 19594 pyrroline-5-carboxylate reductase YP_004654491.1 1091556 R 761193 CDS YP_004654492.1 338210443 10869440 1092782..1095658 1 NC_015703.1 PFAM: Prolyl oligopeptidase; InterPro IPR001387; KEGG: sli:Slin_1627 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: XRE family transcriptional regulator; peptidase S9 prolyl oligopeptidase active site domain-containing protein 1095658 10869440 Runsl_0923 Runella slithyformis DSM 19594 peptidase S9 prolyl oligopeptidase active site domain-containing protein YP_004654492.1 1092782 D 761193 CDS YP_004654493.1 338210444 10869441 complement(1095750..1096130) 1 NC_015703.1 PFAM: Helix-turn-helix; COGs: COG1819 Glycosyl transferase related to UDP-glucuronosyltransferase; InterPro IPR007235; KEGG: dfe:Dfer_5248 glycosyltransferase 28 domain; PFAM: Glycosyl transferase, family 28, C-terminal; SPTR: Glycosyltransferase, MGT family; helix-turn-helix domain-containing protein 1096130 10869441 Runsl_0924 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004654493.1 1095750 R 761193 CDS YP_004654494.1 338210445 10869442 1096600..1097937 1 NC_015703.1 PFAM: Glycosyltransferase 28 C-terminal domain; KEGG: sli:Slin_0773 peptidase C39 bacteriocin processing; SPTR: Peptidase C39 bacteriocin processing; glycosyl transferase family protein 1097937 10869442 Runsl_0925 Runella slithyformis DSM 19594 glycosyl transferase family protein YP_004654494.1 1096600 D 761193 CDS YP_004654495.1 338210446 10869443 1097988..1098449 1 NC_015703.1 PFAM: Peptidase C39 family; KEGG: dfe:Dfer_2224 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1098449 10869443 Runsl_0926 Runella slithyformis DSM 19594 hypothetical protein YP_004654495.1 1097988 D 761193 CDS YP_004654496.1 338210447 10869444 1098465..1099421 1 NC_015703.1 hypothetical protein 1099421 10869444 Runsl_0927 Runella slithyformis DSM 19594 hypothetical protein YP_004654496.1 1098465 D 761193 CDS YP_004654497.1 338210448 10869445 1099480..1099674 1 NC_015703.1 hypothetical protein 1099674 10869445 Runsl_0928 Runella slithyformis DSM 19594 hypothetical protein YP_004654497.1 1099480 D 761193 CDS YP_004654498.1 338210449 10869446 1099721..1099918 1 NC_015703.1 Prodigal; This gene is disrupted by insertion of repetitive element; manually curated; hypothetical protein 1099918 10869446 Runsl_0929 Runella slithyformis DSM 19594 hypothetical protein YP_004654498.1 1099721 D 761193 CDS YP_004654499.1 338210450 10869448 join(1100449..1100913,1100915..1101460) 1 NC_015703.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; transposase 1101460 10869448 Runsl_0931 Runella slithyformis DSM 19594 transposase YP_004654499.1 1100449 D 761193 CDS YP_004654500.1 338210451 10869449 1102058..1102264 1 NC_015703.1 KEGG: pmo:Pmob_0677 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1102264 10869449 Runsl_0932 Runella slithyformis DSM 19594 hypothetical protein YP_004654500.1 1102058 D 761193 CDS YP_004654501.1 338210452 10869450 1102254..1103291 1 NC_015703.1 TIGRFAM: radical SAM additional 4Fe4S-binding domain; hypothetical protein 1103291 10869450 Runsl_0933 Runella slithyformis DSM 19594 hypothetical protein YP_004654501.1 1102254 D 761193 CDS YP_004654502.1 338210453 10869451 1103288..1103401 1 NC_015703.1 COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR005074:IPR001140:IPR003439:IPR003593; KEGG: sli:Slin_0781 ABC transporter; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; hypothetical protein 1103401 10869451 Runsl_0934 Runella slithyformis DSM 19594 hypothetical protein YP_004654502.1 1103288 D 761193 CDS YP_004654503.1 338210454 10869452 1103398..1105752 1 NC_015703.1 PFAM: ABC transporter; ABC transporter transmembrane region; Peptidase C39 family; InterPro IPR006143; KEGG: sli:Slin_0782 hypothetical protein; PFAM: Secretion protein HlyD; SPTR: uncharacterized protein; xenobiotic-transporting ATPase 1105752 10869452 Runsl_0935 Runella slithyformis DSM 19594 xenobiotic-transporting ATPase YP_004654503.1 1103398 D 761193 CDS YP_004654504.1 338210455 10869453 1105759..1107072 1 NC_015703.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR011703; KEGG: sli:Slin_2939 ATPase AAA; PFAM: ATPase associated with various cellular activities, AAA-3; SPTR: ATPase associated with various cellular activities AAA_3; secretion protein HlyD family protein 1107072 10869453 Runsl_0936 Runella slithyformis DSM 19594 secretion protein HlyD family protein YP_004654504.1 1105759 D 761193 CDS YP_004654505.1 338210456 10869454 complement(1107073..1108029) 1 NC_015703.1 PFAM: ATPase associated with various cellular activities (AAA); COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119; KEGG: bvu:BVU_3813 transcriptional regulator; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; SPTR: uncharacterized protein; manually curated; ATPase 1108029 10869454 Runsl_0937 Runella slithyformis DSM 19594 ATPase YP_004654505.1 1107073 R 761193 CDS YP_004654506.1 338210457 10869455 1108262..1109158 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: mtt:Ftrac_0426 DNA-cytosine methyltransferase; PFAM: DNA methylase, C-5 cytosine-specific; PRIAM: DNA (cytosine-5-)-methyltransferase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA methylase, C-5 cytosine-specific; LysR family transcriptional regulator 1109158 10869455 Runsl_0938 Runella slithyformis DSM 19594 LysR family transcriptional regulator YP_004654506.1 1108262 D 761193 CDS YP_004654507.1 338210458 10869456 complement(1109268..1110314) 1 NC_015703.1 PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); DNA-cytosine methyltransferase 1110314 10869456 Runsl_0939 Runella slithyformis DSM 19594 DNA-cytosine methyltransferase YP_004654507.1 1109268 R 761193 CDS YP_004654508.1 338210459 10869457 complement(1110408..1110668) 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 1110668 10869457 Runsl_0940 Runella slithyformis DSM 19594 hypothetical protein YP_004654508.1 1110408 R 761193 CDS YP_004654509.1 338210460 10869459 complement(1111283..1112449) 1 NC_015703.1 PFAM: Beta-lactamase; COGs: COG3394 conserved hypothetical protein; InterPro IPR006879; KEGG: sli:Slin_1052 YdjC family protein; PFAM: YdjC-like protein; SPTR: YdjC family protein; beta-lactamase 1112449 10869459 Runsl_0942 Runella slithyformis DSM 19594 beta-lactamase YP_004654509.1 1111283 R 761193 CDS YP_004654510.1 338210461 10869460 1112552..1113544 1 NC_015703.1 PFAM: YdjC-like protein; KEGG: sli:Slin_2577 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1113544 10869460 Runsl_0943 Runella slithyformis DSM 19594 hypothetical protein YP_004654510.1 1112552 D 761193 CDS YP_004654511.1 338210462 10869461 1113949..1114929 1 NC_015703.1 PFAM: Glycosyl transferase 8; InterPro IPR001173; KEGG: sli:Slin_2580 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; hypothetical protein 1114929 10869461 Runsl_0944 Runella slithyformis DSM 19594 hypothetical protein YP_004654511.1 1113949 D 761193 CDS YP_004654512.1 338210463 10869462 1114973..1115989 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG0859 ADP-heptose:LPS heptosyltransferase; KEGG: sli:Slin_0408 ADP-heptose:LPS heptosyltransferase-like protein; SPTR: ADP-heptose:LPS heptosyltransferase-like protein; family 2 glycosyl transferase 1115989 10869462 Runsl_0945 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004654512.1 1114973 D 761193 CDS YP_004654513.1 338210464 10869463 complement(1116011..1117210) 1 NC_015703.1 PFAM: Glycosyltransferase 9 (heptosyltransferase); KEGG: sli:Slin_2579 hypothetical protein; SPTR: uncharacterized protein; ADP-heptose--LPS heptosyltransferase-like protein 1117210 10869463 Runsl_0946 Runella slithyformis DSM 19594 ADP-heptose--LPS heptosyltransferase-like protein YP_004654513.1 1116011 R 761193 CDS YP_004654514.1 338210465 10869464 complement(1117214..1118026) 1 NC_015703.1 COGs: COG0056 F0F1-type ATP synthase alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; InterPro IPR005294:IPR004100:IPR000194:IPR000793; KEGG: lby:Lbys_1612 ATP synthase f1 subcomplex alpha subunit; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; SPTR: ATP synthase subunit alpha; TIGRFAM: ATPase, F1 complex, alpha subunit; hypothetical protein 1118026 10869464 Runsl_0947 Runella slithyformis DSM 19594 hypothetical protein YP_004654514.1 1117214 R 761193 CDS YP_004654515.1 338210466 10869465 1118412..1119989 1 NC_015703.1 PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain; ATP synthase alpha/beta chain, C terminal domain; TIGRFAM: proton translocating ATP synthase, F1 alpha subunit; KEGG: cyp:PCC8801_2037 hypothetical protein; SPTR: uncharacterized protein; ATP synthase subunit alpha 1119989 10869465 Runsl_0948 Runella slithyformis DSM 19594 ATP synthase subunit alpha YP_004654515.1 1118412 D 761193 CDS YP_004654516.1 338210467 10869466 1119999..1120916 1 NC_015703.1 COGs: COG0224 F0F1-type ATP synthase gamma subunit; HAMAP: ATP synthase gamma chain; InterPro IPR000131; KEGG: dfe:Dfer_4631 ATP synthase F1, gamma subunit; PFAM: ATPase, F1 complex, gamma subunit; SPTR: ATP synthase gamma chain; TIGRFAM: ATPase, F1 complex, gamma subunit; hypothetical protein 1120916 10869466 Runsl_0949 Runella slithyformis DSM 19594 hypothetical protein YP_004654516.1 1119999 D 761193 CDS YP_004654517.1 338210468 10869467 1121033..1121923 1 NC_015703.1 PFAM: ATP synthase; TIGRFAM: ATP synthase, F1 gamma subunit; KEGG: sli:Slin_3387 hypothetical protein; SPTR: uncharacterized protein; ATP synthase subunit gamma 1121923 10869467 Runsl_0950 Runella slithyformis DSM 19594 ATP synthase subunit gamma YP_004654517.1 1121033 D 761193 CDS YP_004654518.1 338210469 10869468 complement(1122133..1122549) 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 1122549 10869468 Runsl_0951 Runella slithyformis DSM 19594 hypothetical protein YP_004654518.1 1122133 R 761193 CDS YP_004654519.1 338210470 10869470 complement(1124247..1125077) 1 NC_015703.1 KEGG: sli:Slin_6357 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1125077 10869470 Runsl_0953 Runella slithyformis DSM 19594 hypothetical protein YP_004654519.1 1124247 R 761193 CDS YP_004654520.1 338210471 10869471 complement(1125560..1126564) 1 NC_015703.1 hypothetical protein 1126564 10869471 Runsl_0954 Runella slithyformis DSM 19594 hypothetical protein YP_004654520.1 1125560 R 761193 CDS YP_004654521.1 338210472 10869472 complement(1126661..1126804) 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 1126804 10869472 Runsl_0955 Runella slithyformis DSM 19594 hypothetical protein YP_004654521.1 1126661 R 761193 CDS YP_004654522.1 338210473 10869474 complement(1127241..1127333) 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 1127333 10869474 Runsl_0957 Runella slithyformis DSM 19594 hypothetical protein YP_004654522.1 1127241 R 761193 CDS YP_004654523.1 338210474 10869477 1128544..1129188 1 NC_015703.1 PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; LuxR family transcriptional regulator 1129188 10869477 Runsl_0960 Runella slithyformis DSM 19594 LuxR family transcriptional regulator YP_004654523.1 1128544 D 761193 CDS YP_004654524.1 338210475 10869478 complement(1129192..1130175) 1 NC_015703.1 COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094:IPR004113; KEGG: dfe:Dfer_3155 D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; PRIAM: D-lactate dehydrogenase (cytochrome); SPTR: D-lactate dehydrogenase (Cytochrome); hypothetical protein 1130175 10869478 Runsl_0961 Runella slithyformis DSM 19594 hypothetical protein YP_004654524.1 1129192 R 761193 CDS YP_004654525.1 338210476 10869479 complement(1130188..1133154) 1 NC_015703.1 PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; COGs: COG2264 Ribosomal protein L11 methylase; HAMAP: Ribosomal protein L11 methyltransferase; InterPro IPR010456; KEGG: sli:Slin_5617 ribosomal L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase; SPTR: Ribosomal protein L11 methyltransferase; D-lactate dehydrogenase 1133154 10869479 Runsl_0962 Runella slithyformis DSM 19594 D-lactate dehydrogenase YP_004654525.1 1130188 R 761193 CDS YP_004654526.1 338210477 10869480 1133290..1134123 1 NC_015703.1 PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; KEGG: sli:Slin_5684 epimerase; SPTR: Epimerase; 50S ribosomal protein L11 methyltransferase 1134123 10869480 Runsl_0963 Runella slithyformis DSM 19594 50S ribosomal protein L11 methyltransferase YP_004654526.1 1133290 D 761193 CDS YP_004654527.1 338210478 10869481 1134120..1134950 1 NC_015703.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_5961 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; epimerase 1134950 10869481 Runsl_0964 Runella slithyformis DSM 19594 epimerase YP_004654527.1 1134120 D 761193 CDS YP_004654528.1 338210479 10869482 1135231..1135743 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG0812 UDP-N-acetylmuramate dehydrogenase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; InterPro IPR003170:IPR006094:IPR011601; KEGG: sli:Slin_5155 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal; SPTR: UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; ECF subfamily RNA polymerase sigma-24 subunit 1135743 10869482 Runsl_0965 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004654528.1 1135231 D 761193 CDS YP_004654529.1 338210480 10869483 complement(1135860..1136879) 1 NC_015703.1 PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR001678; KEGG: dfe:Dfer_1088 Fmu (Sun) domain protein; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; SPTR: Fmu (Sun) domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase 1136879 10869483 Runsl_0966 Runella slithyformis DSM 19594 UDP-N-acetylenolpyruvoylglucosamine reductase YP_004654529.1 1135860 R 761193 CDS YP_004654530.1 338210481 10869484 complement(1136926..1138122) 1 NC_015703.1 PFAM: NOL1/NOP2/sun family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB; KEGG: sli:Slin_3058 hypothetical protein; SPTR: uncharacterized protein; Fmu (Sun) domain-containing protein 1138122 10869484 Runsl_0967 Runella slithyformis DSM 19594 Fmu (Sun) domain-containing protein YP_004654530.1 1136926 R 761193 CDS YP_004654531.1 338210482 10869485 1139512..1139826 1 NC_015703.1 KEGG: dfe:Dfer_3243 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1139826 10869485 Runsl_0968 Runella slithyformis DSM 19594 hypothetical protein YP_004654531.1 1139512 D 761193 CDS YP_004654532.1 338210483 10869486 complement(1139882..1140277) 1 NC_015703.1 COGs: COG2041 Sulfite oxidase; InterPro IPR006311:IPR000572:IPR005066; KEGG: sli:Slin_3624 oxidoreductase molybdopterin binding protein; PFAM: Oxidoreductase, molybdopterin binding; Moybdenum cofactor oxidoreductase, dimerisation; PRIAM: Sulfite oxidase; SPTR: Oxidoreductase molybdopterin binding protein; hypothetical protein 1140277 10869486 Runsl_0969 Runella slithyformis DSM 19594 hypothetical protein YP_004654532.1 1139882 R 761193 CDS YP_004654533.1 338210484 10869487 complement(1140420..1141652) 1 NC_015703.1 PFAM: Mo-co oxidoreductase dimerisation domain; Oxidoreductase molybdopterin binding domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839; KEGG: sli:Slin_6350 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; SPTR: Aminotransferase class I and II; sulfite oxidase 1141652 10869487 Runsl_0970 Runella slithyformis DSM 19594 sulfite oxidase YP_004654533.1 1140420 R 761193 CDS YP_004654534.1 338210485 10869488 1141981..1143153 1 NC_015703.1 PFAM: Aminotransferase class I and II; KEGG: sli:Slin_5747 hypothetical protein; SPTR: uncharacterized protein; class I and II aminotransferase 1143153 10869488 Runsl_0971 Runella slithyformis DSM 19594 class I and II aminotransferase YP_004654534.1 1141981 D 761193 CDS YP_004654535.1 338210486 10869489 1143286..1143987 1 NC_015703.1 InterPro IPR000835; KEGG: sli:Slin_4426 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; hypothetical protein 1143987 10869489 Runsl_0972 Runella slithyformis DSM 19594 hypothetical protein YP_004654535.1 1143286 D 761193 CDS YP_004654536.1 338210487 10869490 1144065..1144595 1 NC_015703.1 PFAM: MarR family; InterPro IPR001647; KEGG: dfe:Dfer_3428 transcriptional regulator, TetR family; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; regulatory protein MarR 1144595 10869490 Runsl_0973 Runella slithyformis DSM 19594 regulatory protein MarR YP_004654536.1 1144065 D 761193 CDS YP_004654537.1 338210488 10869491 1145014..1145664 1 NC_015703.1 PFAM: Bacterial regulatory proteins, tetR family; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_5506 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; TetR family transcriptional regulator 1145664 10869491 Runsl_0974 Runella slithyformis DSM 19594 TetR family transcriptional regulator YP_004654537.1 1145014 D 761193 CDS YP_004654538.1 338210489 10869492 1145728..1147083 1 NC_015703.1 PFAM: Outer membrane efflux protein; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_3430 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; outer membrane efflux protein 1147083 10869492 Runsl_0975 Runella slithyformis DSM 19594 outer membrane efflux protein YP_004654538.1 1145728 D 761193 CDS YP_004654539.1 338210490 10869493 1147100..1148290 1 NC_015703.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: sli:Slin_5504 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; RND family efflux transporter MFP subunit 1148290 10869493 Runsl_0976 Runella slithyformis DSM 19594 RND family efflux transporter MFP subunit YP_004654539.1 1147100 D 761193 CDS YP_004654540.1 338210491 10869494 1148309..1151785 1 NC_015703.1 PFAM: AcrB/AcrD/AcrF family; COGs: COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; InterPro IPR002579; KEGG: fjo:Fjoh_0270 methionine-R-sulfoxide reductase; PFAM: Methionine sulphoxide reductase B; PRIAM: Peptide-methionine (R)-S-oxide reductase; SPTR: Methionine-R-sulfoxide reductase; TIGRFAM: Methionine sulphoxide reductase B; acriflavin resistance protein 1151785 10869494 Runsl_0977 Runella slithyformis DSM 19594 acriflavin resistance protein YP_004654540.1 1148309 D 761193 CDS YP_004654541.1 338210492 10869495 complement(1151871..1152383) 1 NC_015703.1 PFAM: SelR domain; TIGRFAM: methionine-R-sulfoxide reductase; COGs: COG4634 conserved hypothetical protein; KEGG: dfe:Dfer_5087 hypothetical protein; SPTR: uncharacterized protein; methionine-R-sulfoxide reductase 1152383 10869495 Runsl_0978 Runella slithyformis DSM 19594 methionine-R-sulfoxide reductase YP_004654541.1 1151871 R 761193 CDS YP_004654542.1 338210493 10869496 complement(1152397..1152759) 1 NC_015703.1 PFAM: Protein of unknown function DUF82; COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: dfe:Dfer_5088 protein of unknown function DUF433; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein; hypothetical protein 1152759 10869496 Runsl_0979 Runella slithyformis DSM 19594 hypothetical protein YP_004654542.1 1152397 R 761193 CDS YP_004654543.1 338210494 10869497 complement(1152760..1152987) 1 NC_015703.1 PFAM: Protein of unknown function (DUF433); COGs: COG3358 conserved hypothetical protein; InterPro IPR012467; KEGG: sli:Slin_6369 hypothetical protein; PFAM: Protein of unknown function DUF1684; SPTR: uncharacterized protein; hypothetical protein 1152987 10869497 Runsl_0980 Runella slithyformis DSM 19594 hypothetical protein YP_004654543.1 1152760 R 761193 CDS YP_004654544.1 338210495 10869498 complement(1153073..1153687) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1684); KEGG: sli:Slin_1343 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1153687 10869498 Runsl_0981 Runella slithyformis DSM 19594 hypothetical protein YP_004654544.1 1153073 R 761193 CDS YP_004654545.1 338210496 10869499 complement(1153783..1155492) 1 NC_015703.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR000014:IPR013655:IPR013767:IPR003661:IPR 003594:IPR001610:IPR003018; KEGG: mtt:Ftrac_0408 pas/pac sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold; PAS fold-3; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAC motif; PAS; GAF; SPTR: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS; hypothetical protein 1155492 10869499 Runsl_0982 Runella slithyformis DSM 19594 hypothetical protein YP_004654545.1 1153783 R 761193 CDS YP_004654546.1 338210497 10869500 1156244..1159759 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789; KEGG: cao:Celal_1932 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; multi-sensor signal transduction histidine kinase 1159759 10869500 Runsl_0983 Runella slithyformis DSM 19594 multi-sensor signal transduction histidine kinase YP_004654546.1 1156244 D 761193 CDS YP_004654547.1 338210498 10869501 1159766..1160191 1 NC_015703.1 PFAM: Response regulator receiver domain; COGs: COG0784 FOG: CheY-like receiver; InterPro IPR000014:IPR001789:IPR013655:IPR003661; KEGG: mtt:Ftrac_2272 pas/pac sensor protein; PFAM: Signal transduction response regulator, receiver region; PAS fold-3; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: Signal transduction response regulator, receiver region; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: PAS/PAC sensor protein; TIGRFAM: PAS; response regulator receiver protein 1160191 10869501 Runsl_0984 Runella slithyformis DSM 19594 response regulator receiver protein YP_004654547.1 1159766 D 761193 CDS YP_004654548.1 338210499 10869502 1160229..1161218 1 NC_015703.1 PFAM: Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; InterPro IPR001789; KEGG: mtt:Ftrac_2271 response regulator receiver; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver; PAS/PAC sensor protein 1161218 10869502 Runsl_0985 Runella slithyformis DSM 19594 PAS/PAC sensor protein YP_004654548.1 1160229 D 761193 CDS YP_004654549.1 338210500 10869503 1161211..1161621 1 NC_015703.1 PFAM: Response regulator receiver domain; COGs: COG1725 transcriptional regulator protein; InterPro IPR000524; KEGG: sli:Slin_3237 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; SPTR: Transcriptional regulator, GntR family; response regulator receiver 1161621 10869503 Runsl_0986 Runella slithyformis DSM 19594 response regulator receiver YP_004654549.1 1161211 D 761193 CDS YP_004654550.1 338210501 10869504 complement(1161644..1162663) 1 NC_015703.1 PFAM: Bacterial regulatory proteins, gntR family; COGs: COG1179 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 1; InterPro IPR000594; KEGG: psn:Pedsa_2841 UBA/ThiF-type NAD/FAD binding protein; PFAM: UBA/THIF-type NAD/FAD binding fold; SPTR: UBA/THIF-type NAD/FAD binding protein; GntR family transcriptional regulator 1162663 10869504 Runsl_0987 Runella slithyformis DSM 19594 GntR family transcriptional regulator YP_004654550.1 1161644 R 761193 CDS YP_004654551.1 338210502 10869505 complement(1162685..1163491) 1 NC_015703.1 PFAM: ThiF family; COGs: COG0084 Mg-dependent DNase; InterPro IPR001130; KEGG: phe:Phep_4182 TatD-related deoxyribonuclease; PFAM: Deoxyribonuclease, TatD-related; SPTR: TatD-related deoxyribonuclease; UBA/THIF-type NAD/FAD binding protein 1163491 10869505 Runsl_0988 Runella slithyformis DSM 19594 UBA/THIF-type NAD/FAD binding protein YP_004654551.1 1162685 R 761193 CDS YP_004654552.1 338210503 10869506 complement(1163575..1164240) 1 NC_015703.1 PFAM: TatD related DNase; COGs: COG2153 acyltransferase; InterPro IPR000182; KEGG: lby:Lbys_1165 gcn5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; TatD-related deoxyribonuclease 1164240 10869506 Runsl_0989 Runella slithyformis DSM 19594 TatD-related deoxyribonuclease YP_004654552.1 1163575 R 761193 CDS YP_004654553.1 338210504 10869507 1164290..1164748 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG1301 Na+/H+-dicarboxylate symporter; InterPro IPR001991; KEGG: dfe:Dfer_3533 sodium:dicarboxylate symporter; PFAM: Sodium:dicarboxylate symporter; SPTR: Sodium:dicarboxylate symporter; N-acetyltransferase GCN5 1164748 10869507 Runsl_0990 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004654553.1 1164290 D 761193 CDS YP_004654554.1 338210505 10869508 complement(1164745..1166079) 1 NC_015703.1 PFAM: Sodium:dicarboxylate symporter family; KEGG: sli:Slin_3425 hypothetical protein; SPTR: uncharacterized protein; sodium:dicarboxylate symporter 1166079 10869508 Runsl_0991 Runella slithyformis DSM 19594 sodium:dicarboxylate symporter YP_004654554.1 1164745 R 761193 CDS YP_004654555.1 338210506 10869509 1166123..1166740 1 NC_015703.1 COGs: COG0679 permease; InterPro IPR004776; KEGG: wvi:Weevi_0924 auxin efflux carrier; PFAM: Auxin efflux carrier; SPTR: uncharacterized protein; hypothetical protein 1166740 10869509 Runsl_0992 Runella slithyformis DSM 19594 hypothetical protein YP_004654555.1 1166123 D 761193 CDS YP_004654556.1 338210507 10869510 complement(1166770..1167690) 1 NC_015703.1 PFAM: Membrane transport protein; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR011662:IPR012910:IPR000531; KEGG: sli:Slin_5287 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; SPTR: TonB-dependent receptor; auxin efflux carrier family protein 1167690 10869510 Runsl_0993 Runella slithyformis DSM 19594 auxin efflux carrier family protein YP_004654556.1 1166770 R 761193 CDS YP_004654557.1 338210508 10869511 complement(1167754..1170786) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: sli:Slin_4781 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; TonB-dependent receptor 1170786 10869511 Runsl_0994 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004654557.1 1167754 R 761193 CDS YP_004654558.1 338210509 10869512 complement(1170940..1171953) 1 NC_015703.1 PFAM: FecR protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR014327:IPR007627:IPR013249; KEGG: sli:Slin_4780 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; anti-FecI sigma factor FecR 1171953 10869512 Runsl_0995 Runella slithyformis DSM 19594 anti-FecI sigma factor FecR YP_004654558.1 1170940 R 761193 CDS YP_004654559.1 338210510 10869513 complement(1172033..1172599) 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; InterPro IPR002509; KEGG: tgr:Tgr7_2375 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: uncharacterized protein; ECF subfamily RNA polymerase sigma-24 subunit 1172599 10869513 Runsl_0996 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004654559.1 1172033 R 761193 CDS YP_004654560.1 338210511 10869514 complement(1172905..1173918) 1 NC_015703.1 PFAM: Polysaccharide deacetylase; COGs: COG0627 esterase; InterPro IPR000801; KEGG: sli:Slin_6266 esterase; PFAM: esterase; SPTR: esterase; polysaccharide deacetylase 1173918 10869514 Runsl_0997 Runella slithyformis DSM 19594 polysaccharide deacetylase YP_004654560.1 1172905 R 761193 CDS YP_004654561.1 338210512 10869515 complement(1173926..1174738) 1 NC_015703.1 PFAM: esterase; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR006311:IPR012307; KEGG: dfe:Dfer_3269 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; esterase 1174738 10869515 Runsl_0998 Runella slithyformis DSM 19594 esterase YP_004654561.1 1173926 R 761193 CDS YP_004654562.1 338210513 10869516 complement(1174868..1175800) 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; KEGG: cyj:Cyan7822_1092 hypothetical protein; SPTR: uncharacterized protein; xylose isomerase domain-containing protein 1175800 10869516 Runsl_0999 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004654562.1 1174868 R 761193 CDS YP_004654563.1 338210514 10869517 complement(1176028..1176354) 1 NC_015703.1 InterPro IPR007367; KEGG: rrs:RoseRS_0655 hypothetical protein; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein; hypothetical protein 1176354 10869517 Runsl_1000 Runella slithyformis DSM 19594 hypothetical protein YP_004654563.1 1176028 R 761193 CDS YP_004654564.1 338210515 10869518 complement(1176338..1176568) 1 NC_015703.1 PFAM: Protein of unknown function (DUF433); InterPro IPR006311:IPR010869; KEGG: dfe:Dfer_0332 protein of unknown function DUF1501; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein; hypothetical protein 1176568 10869518 Runsl_1001 Runella slithyformis DSM 19594 hypothetical protein YP_004654564.1 1176338 R 761193 CDS YP_004654565.1 338210516 10869519 complement(1176678..1178192) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1501); InterPro IPR011429:IPR011444; KEGG: dfe:Dfer_0333 protein of unknown function DUF1549; PFAM: Protein of unknown function DUF1549; Cytochrome C, Planctomycete; SPTR: uncharacterized protein; hypothetical protein 1178192 10869519 Runsl_1002 Runella slithyformis DSM 19594 hypothetical protein YP_004654565.1 1176678 R 761193 CDS YP_004654566.1 338210517 10869520 complement(1178283..1181495) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553); COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: zpr:ZPR_4364 bacterial regulatory helix-turn-helix protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; hypothetical protein 1181495 10869520 Runsl_1003 Runella slithyformis DSM 19594 hypothetical protein YP_004654566.1 1178283 R 761193 CDS YP_004654567.1 338210518 10869521 1181736..1182611 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR013216; KEGG: chu:CHU_1562 SAM-dependent methyltransferase; PFAM: Methyltransferase type 11; SPTR: SAM-dependent methyltransferase; AraC family transcriptional regulator 1182611 10869521 Runsl_1004 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004654567.1 1181736 D 761193 CDS YP_004654568.1 338210519 10869522 complement(1182654..1183388) 1 NC_015703.1 PFAM: Methyltransferase domain; KEGG: sli:Slin_0320 hypothetical protein; SPTR: uncharacterized protein; type 11 methyltransferase 1183388 10869522 Runsl_1005 Runella slithyformis DSM 19594 type 11 methyltransferase YP_004654568.1 1182654 R 761193 CDS YP_004654569.1 338210520 10869523 complement(1183448..1183870) 1 NC_015703.1 PFAM: Predicted nucleotide-binding protein, containing PIN domain; KEGG: sli:Slin_0321 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1183870 10869523 Runsl_1006 Runella slithyformis DSM 19594 hypothetical protein YP_004654569.1 1183448 R 761193 CDS YP_004654570.1 338210521 10869524 complement(1183870..1184094) 1 NC_015703.1 COGs: COG3622 Hydroxypyruvate isomerase; InterPro IPR012307; KEGG: sli:Slin_5812 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; hypothetical protein 1184094 10869524 Runsl_1007 Runella slithyformis DSM 19594 hypothetical protein YP_004654570.1 1183870 R 761193 CDS YP_004654571.1 338210522 10869525 complement(1184226..1185155) 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; xylose isomerase domain-containing protein 1185155 10869525 Runsl_1008 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004654571.1 1184226 R 761193 CDS YP_004654572.1 338210523 10869526 complement(1185237..1185434) 1 NC_015703.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: lby:Lbys_1107 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SPTR: Integral membrane sensor signal transduction histidine kinase; hypothetical protein 1185434 10869526 Runsl_1009 Runella slithyformis DSM 19594 hypothetical protein YP_004654572.1 1185237 R 761193 CDS YP_004654573.1 338210524 10869527 complement(1185469..1186851) 1 NC_015703.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; KEGG: sli:Slin_1749 hypothetical protein; SPTR: uncharacterized protein; integral membrane sensor signal transduction histidine kinase 1186851 10869527 Runsl_1010 Runella slithyformis DSM 19594 integral membrane sensor signal transduction histidine kinase YP_004654573.1 1185469 R 761193 CDS YP_004654574.1 338210525 10869528 complement(1186876..1187643) 1 NC_015703.1 COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: sli:Slin_1750 O-succinylbenzoic acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: o-succinylbenzoate--CoA ligase; SPTR: O-succinylbenzoic acid--CoA ligase; hypothetical protein 1187643 10869528 Runsl_1011 Runella slithyformis DSM 19594 hypothetical protein YP_004654574.1 1186876 R 761193 CDS YP_004654575.1 338210526 10869529 complement(1187674..1188729) 1 NC_015703.1 PFAM: AMP-binding enzyme; InterPro IPR017941; KEGG: sli:Slin_4885 Rieske (2Fe-2S) iron-sulphur domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Rieske (2Fe-2S) iron-sulphur domain protein; o-succinylbenzoate--CoA ligase 1188729 10869529 Runsl_1012 Runella slithyformis DSM 19594 o-succinylbenzoate--CoA ligase YP_004654575.1 1187674 R 761193 CDS YP_004654576.1 338210527 10869530 complement(1188738..1189199) 1 NC_015703.1 PFAM: Rieske [2Fe-2S] domain; InterPro IPR014867; KEGG: sli:Slin_3459 spore coat protein CotH; PFAM: Spore coat protein CotH; SPTR: Spore coat protein CotH; Rieske (2Fe-2S) domain-containing protein 1189199 10869530 Runsl_1013 Runella slithyformis DSM 19594 Rieske (2Fe-2S) domain-containing protein YP_004654576.1 1188738 R 761193 CDS YP_004654577.1 338210528 10869531 1189382..1191010 1 NC_015703.1 PFAM: CotH protein; InterPro IPR007409; KEGG: sli:Slin_0367 hypothetical protein; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; SPTR: uncharacterized protein; spore coat protein CotH 1191010 10869531 Runsl_1014 Runella slithyformis DSM 19594 spore coat protein CotH YP_004654577.1 1189382 D 761193 CDS YP_004654578.1 338210529 10869532 complement(1191014..1191460) 1 NC_015703.1 COGs: COG0775 Nucleoside phosphorylase; InterPro IPR010944:IPR000845; KEGG: sli:Slin_0368 AMP nucleosidase; PFAM: Nucleoside phosphorylase; SPTR: AMP nucleosidase; TIGRFAM: AMP nucleosidase; Restriction endonuclease, type I, EcoRI, R subunit/type III 1191460 10869532 Runsl_1015 Runella slithyformis DSM 19594 Restriction endonuclease, type I, EcoRI, R subunit/type III YP_004654578.1 1191014 R 761193 CDS YP_004654579.1 338210530 10869533 1191542..1192312 1 NC_015703.1 PFAM: Phosphorylase superfamily; TIGRFAM: AMP nucleosidase, InterPro IPR001440:IPR019734; KEGG: sli:Slin_0369 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; AMP nucleosidase 1192312 10869533 Runsl_1016 Runella slithyformis DSM 19594 AMP nucleosidase YP_004654579.1 1191542 D 761193 CDS YP_004654580.1 338210531 10869534 complement(1192413..1193753) 1 NC_015703.1 PFAM: Tetratricopeptide repeat; COGs: COG1575 1 4-dihydroxy-2-naphthoate octaprenyltransferase; InterPro IPR004657:IPR000537; KEGG: dfe:Dfer_2681 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; SPTR:1,4-dihydroxy-2-naphthoateoctaprenyltransferas e; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; hypothetical protein 1193753 10869534 Runsl_1017 Runella slithyformis DSM 19594 hypothetical protein YP_004654580.1 1192413 R 761193 CDS YP_004654581.1 338210532 10869535 complement(1193865..1194764) 1 NC_015703.1 PFAM: UbiA prenyltransferase; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 1194764 10869535 Runsl_1018 Runella slithyformis DSM 19594 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_004654581.1 1193865 R 761193 CDS YP_004654582.1 338210533 10869537 complement(1195063..1198035) 1 NC_015703.1 PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; HAMAP:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-di aminopimelateligase; InterPro IPR005761:IPR000713:IPR013221:IPR004101; KEGG: sli:Slin_4739 UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelateligase; SPTR: UDP-N-acetylmuramyl-tripeptide synthetase; TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelateligase; D-lactate dehydrogenase 1198035 10869537 Runsl_1019 Runella slithyformis DSM 19594 D-lactate dehydrogenase YP_004654582.1 1195063 R 761193 CDS YP_004654583.1 338210534 10869538 complement(1198377..1199840) 1 NC_015703.1 PFAM: Mur ligase, glutamate ligase domain; Mur ligase, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: dfe:Dfer_4116 hypothetical protein; PFAM: Conserved hypothetical protein CHP00730; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00730; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 1199840 10869538 Runsl_1020 Runella slithyformis DSM 19594 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase YP_004654583.1 1198377 R 761193 CDS YP_004654584.1 338210535 10869539 complement(1199959..1200546) 1 NC_015703.1 PFAM: Possible lysine decarboxylase; TIGRFAM: TIGR00725 family protein; TIGR00730 family protein; COGs: COG1975 Xanthine and CO dehydrogenase maturation factor XdhC/CoxF family; InterPro IPR003777; KEGG: sli:Slin_5428 xanthine dehydrogenase; PFAM: XdhC- CoxI; SPTR: Xanthine dehydrogenase; hypothetical protein 1200546 10869539 Runsl_1021 Runella slithyformis DSM 19594 hypothetical protein YP_004654584.1 1199959 R 761193 CDS YP_004654585.1 338210536 10869540 1200678..1201799 1 NC_015703.1 PFAM: XdhC and CoxI family; COGs: COG0303 Molybdopterin biosynthesis enzyme; InterPro IPR020817:IPR005110:IPR001453:IPR005111; KEGG: sli:Slin_2812 molybdenum cofactor synthesis protein; PFAM: MoeA, N-terminal region, domain I/II; Molybdopterin binding; MoeA, C-terminal, domain IV; SPTR: Molybdopterin biosynthesis protein MoeA; TIGRFAM: Molybdenum cofactor synthesis; XshC-Cox1 family protein 1201799 10869540 Runsl_1022 Runella slithyformis DSM 19594 XshC-Cox1 family protein YP_004654585.1 1200678 D 761193 CDS YP_004654586.1 338210537 10869541 1201803..1203005 1 NC_015703.1 PFAM: Probable molybdopterin binding domain; MoeA N-terminal region (domain I and II); MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain; InterPro IPR013346:IPR005144:IPR013509:IPR000788; KEGG: dfe:Dfer_3267 ribonucleoside-diphosphate reductase, alpha subunit; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal; ATP-cone; PRIAM: Ribonucleoside-diphosphate reductase; SPTR: Ribonucleoside-diphosphate reductase; TIGRFAM: Ribonucleoside-diphosphate reductase, alpha subunit; molybdenum cofactor synthesis domain-containing protein 1203005 10869541 Runsl_1023 Runella slithyformis DSM 19594 molybdenum cofactor synthesis domain-containing protein YP_004654586.1 1201803 D 761193 CDS YP_004654587.1 338210538 10869542 1203434..1205881 1 NC_015703.1 PFAM: Ribonucleotide reductase, all-alpha domain; ATP cone domain; Ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; COGs: COG0718 conserved hypothetical protein; HAMAP: Uncharacterised protein family UPF0133; InterPro IPR004401; KEGG: dfe:Dfer_4005 hypothetical protein; PFAM: Uncharacterised protein family UPF0133; SPTR: UPF0133 protein Dfer_4005; TIGRFAM: Uncharacterised protein family UPF0133; ribonucleoside-diphosphate reductase subunit alpha 1205881 10869542 Runsl_1024 Runella slithyformis DSM 19594 ribonucleoside-diphosphate reductase subunit alpha YP_004654587.1 1203434 D 761193 CDS YP_004654588.1 338210539 10869543 1206004..1206342 1 NC_015703.1 PFAM: Uncharacterised BCR, YbaB family COG0718; TIGRFAM: DNA-binding protein, YbaB/EbfC family; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: sli:Slin_6387 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; hypothetical protein 1206342 10869543 Runsl_1025 Runella slithyformis DSM 19594 hypothetical protein YP_004654588.1 1206004 D 761193 CDS YP_004654589.1 338210540 10869544 1206343..1207380 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753; KEGG: sli:Slin_5925 cell shape determining protein, MreB/Mrl family; PFAM: Cell shape determining protein MreB/Mrl; SPTR: Cell shape determining protein, MreB/Mrl family; TIGRFAM: Cell shape determining protein MreB/Mrl; family 2 glycosyl transferase 1207380 10869544 Runsl_1026 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004654589.1 1206343 D 761193 CDS YP_004654590.1 338210541 10869545 1207479..1208504 1 NC_015703.1 PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family; COGs: COG1792 Cell shape-determining protein; InterPro IPR007221; KEGG: dfe:Dfer_3831 rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; SPTR: Rod shape-determining protein MreC; MreB/Mrl family cell shape determining protein 1208504 10869545 Runsl_1027 Runella slithyformis DSM 19594 MreB/Mrl family cell shape determining protein YP_004654590.1 1207479 D 761193 CDS YP_004654591.1 338210542 10869546 1208595..1209443 1 NC_015703.1 PFAM: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; KEGG: sli:Slin_5927 hypothetical protein; SPTR: uncharacterized protein; Rod shape-determining protein MreC 1209443 10869546 Runsl_1028 Runella slithyformis DSM 19594 Rod shape-determining protein MreC YP_004654591.1 1208595 D 761193 CDS YP_004654592.1 338210543 10869547 1209440..1209943 1 NC_015703.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_3829 RNA polymerase sigma factor RpoE; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein 1209943 10869547 Runsl_1029 Runella slithyformis DSM 19594 hypothetical protein YP_004654592.1 1209440 D 761193 CDS YP_004654593.1 338210544 10869548 1210164..1210793 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: dfe:Dfer_3828 hypothetical protein; SPTR: uncharacterized protein; ECF subfamily RNA polymerase sigma-24 subunit 1210793 10869548 Runsl_1030 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004654593.1 1210164 D 761193 CDS YP_004654594.1 338210545 10869549 1210920..1211222 1 NC_015703.1 TIGRFAM: anti-sigma factor, TIGR02949 family; COGs: COG0194 Guanylate kinase; HAMAP: Guanylate kinase, sub-group; InterPro IPR017665:IPR008144:IPR008145; KEGG: sli:Slin_5548 guanylate kinase; PFAM: Guanylate kinase; PRIAM: Guanylate kinase; SMART: Guanylate kinase/L-type calcium channel region; SPTR: Guanylate kinase; TIGRFAM: Guanylate kinase, sub-group; hypothetical protein 1211222 10869549 Runsl_1031 Runella slithyformis DSM 19594 hypothetical protein YP_004654594.1 1210920 D 761193 CDS YP_004654595.1 338210546 10869550 1211226..1211792 1 NC_015703.1 PFAM: Guanylate kinase; TIGRFAM: guanylate kinase; COGs: COG0492 Thioredoxin reductase; InterPro IPR013027; KEGG: dfe:Dfer_3374 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Ferredoxin--NADP(+) reductase; SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; guanylate kinase 1211792 10869550 Runsl_1032 Runella slithyformis DSM 19594 guanylate kinase YP_004654595.1 1211226 D 761193 CDS YP_004654596.1 338210547 10869551 complement(1211904..1212908) 1 NC_015703.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: bacillithiol system thiol disulfide oxidoreductase, YpdA family; COGs: COG2939 Carboxypeptidase C (cathepsin A); InterPro IPR001563; KEGG: sli:Slin_3251 peptidase S10 serine carboxypeptidase; PFAM: Peptidase S10, serine carboxypeptidase; SPTR: Peptidase S10 serine carboxypeptidase; ferredoxin-NADP reductase 1212908 10869551 Runsl_1033 Runella slithyformis DSM 19594 ferredoxin-NADP reductase YP_004654596.1 1211904 R 761193 CDS YP_004654597.1 338210548 10869552 1213182..1214732 1 NC_015703.1 PFAM: Serine carboxypeptidase; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: fbc:FB2170_04350 hypothetical protein; PFAM: Beta-lactamase-related; SPTR: uncharacterized protein; peptidase S10 serine carboxypeptidase 1214732 10869552 Runsl_1034 Runella slithyformis DSM 19594 peptidase S10 serine carboxypeptidase YP_004654597.1 1213182 D 761193 CDS YP_004654598.1 338210549 10869553 1214909..1216207 1 NC_015703.1 PFAM: Beta-lactamase; InterPro IPR000866; KEGG: dfe:Dfer_0285 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; beta-lactamase 1216207 10869553 Runsl_1035 Runella slithyformis DSM 19594 beta-lactamase YP_004654598.1 1214909 D 761193 CDS YP_004654599.1 338210550 10869554 1216247..1217362 1 NC_015703.1 PFAM: AhpC/TSA family; COGs: COG1515 Deoxyinosine 3'endonuclease (endonuclease V); HAMAP: Endonuclease V; InterPro IPR007581; KEGG: dfe:Dfer_3087 deoxyribonuclease V; PFAM: Endonuclease V; PRIAM: Deoxyribonuclease V; SPTR: Endonuclease V; alkyl hydroperoxide reductase 1217362 10869554 Runsl_1036 Runella slithyformis DSM 19594 alkyl hydroperoxide reductase YP_004654599.1 1216247 D 761193 CDS YP_004654600.1 338210551 10869555 1217475..1218182 1 NC_015703.1 PFAM: Endonuclease V; KEGG: sli:Slin_6364 hypothetical protein; SPTR: uncharacterized protein; endonuclease V 1218182 10869555 Runsl_1037 Runella slithyformis DSM 19594 endonuclease V YP_004654600.1 1217475 D 761193 CDS YP_004654601.1 338210552 10869556 1218666..1219001 1 NC_015703.1 InterPro IPR001789; KEGG: dfe:Dfer_0372 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; hypothetical protein 1219001 10869556 Runsl_1038 Runella slithyformis DSM 19594 hypothetical protein YP_004654601.1 1218666 D 761193 CDS YP_004654602.1 338210553 10869557 complement(1219022..1219447) 1 NC_015703.1 PFAM: Response regulator receiver domain; response regulator receiver 1219447 10869557 Runsl_1039 Runella slithyformis DSM 19594 response regulator receiver YP_004654602.1 1219022 R 761193 CDS YP_004654603.1 338210554 10869559 complement(1219792..1221027) 1 NC_015703.1 PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX; small GTP-binding protein domain; COGs: COG1073 Hydrolase of the alpha/beta superfamily; InterPro IPR000073; KEGG: fbc:FB2170_11196 hypothetical protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: uncharacterized protein; GTP-binding protein HflX 1221027 10869559 Runsl_1040 Runella slithyformis DSM 19594 GTP-binding protein HflX YP_004654603.1 1219792 R 761193 CDS YP_004654604.1 338210555 10869560 1221221..1222066 1 NC_015703.1 PFAM: lysophospholipase; KEGG: fbc:FB2170_11216 glyoxalase; SPTR: uncharacterized protein; alpha/beta hydrolase 1222066 10869560 Runsl_1041 Runella slithyformis DSM 19594 alpha/beta hydrolase YP_004654604.1 1221221 D 761193 CDS YP_004654605.1 338210556 10869561 complement(1222046..1222378) 1 NC_015703.1 COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650; KEGG: dfe:Dfer_4431 peptidase dimerisation domain protein; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: Succinyl-diaminopimelate desuccinylase; SPTR: Peptidase dimerisation domain protein; glyoxalase 1222378 10869561 Runsl_1042 Runella slithyformis DSM 19594 glyoxalase YP_004654605.1 1222046 R 761193 CDS YP_004654606.1 338210557 10869562 1222457..1223542 1 NC_015703.1 PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; InterPro IPR011551:IPR004518; KEGG: dfe:Dfer_4447 nucleoside triphosphate pyrophosphohydrolase; PFAM: NTP pyrophosphohydrolase MazG, catalytic core; SPTR: MazG family protein; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial; succinyl-diaminopimelate desuccinylase 1223542 10869562 Runsl_1043 Runella slithyformis DSM 19594 succinyl-diaminopimelate desuccinylase YP_004654606.1 1222457 D 761193 CDS YP_004654607.1 338210558 10869563 1223654..1224469 1 NC_015703.1 PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein; KEGG: sli:Slin_6006 hypothetical protein; SPTR: uncharacterized protein; nucleotide pyrophosphohydrolase 1224469 10869563 Runsl_1044 Runella slithyformis DSM 19594 nucleotide pyrophosphohydrolase YP_004654607.1 1223654 D 761193 CDS YP_004654608.1 338210559 10869564 1224582..1225670 1 NC_015703.1 KEGG: sli:Slin_2807 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1225670 10869564 Runsl_1045 Runella slithyformis DSM 19594 hypothetical protein YP_004654608.1 1224582 D 761193 CDS YP_004654609.1 338210560 10869565 1225709..1226302 1 NC_015703.1 KEGG: sli:Slin_5997 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1226302 10869565 Runsl_1046 Runella slithyformis DSM 19594 hypothetical protein YP_004654609.1 1225709 D 761193 CDS YP_004654610.1 338210561 10869566 1226338..1227168 1 NC_015703.1 PFAM: Protein of unknown function, DUF481; InterPro IPR009288; KEGG: sli:Slin_5497 AIG2 family protein; PFAM: AIG2-like; SPTR: AIG2 family protein; hypothetical protein 1227168 10869566 Runsl_1047 Runella slithyformis DSM 19594 hypothetical protein YP_004654610.1 1226338 D 761193 CDS YP_004654611.1 338210562 10869567 1227175..1227606 1 NC_015703.1 PFAM: AIG2-like family; KEGG: sli:Slin_0266 hypothetical protein; SPTR: uncharacterized protein; AIG2 family protein 1227606 10869567 Runsl_1048 Runella slithyformis DSM 19594 AIG2 family protein YP_004654611.1 1227175 D 761193 CDS YP_004654612.1 338210563 10869568 1227648..1228355 1 NC_015703.1 KEGG: lby:Lbys_1691 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1228355 10869568 Runsl_1049 Runella slithyformis DSM 19594 hypothetical protein YP_004654612.1 1227648 D 761193 CDS YP_004654613.1 338210564 10869569 1228445..1228780 1 NC_015703.1 PFAM: Protein of unknown function (DUF2853); COGs: COG4365 conserved hypothetical protein; HAMAP: UPF0747 protein; InterPro IPR011199; KEGG: dfe:Dfer_3548 hypothetical protein; PFAM: Uncharacterised conserved protein UCP012535; SPTR: UPF0747 protein Dfer_3548; hypothetical protein 1228780 10869569 Runsl_1050 Runella slithyformis DSM 19594 hypothetical protein YP_004654613.1 1228445 D 761193 CDS YP_004654614.1 338210565 10869570 complement(1228860..1230467) 1 NC_015703.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2317); TIGRFAM: bacillithiol biosynthesis cysteine-adding enzyme BshC; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: mtt:Ftrac_3360 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; hypothetical protein 1230467 10869570 Runsl_1051 Runella slithyformis DSM 19594 hypothetical protein YP_004654614.1 1228860 R 761193 CDS YP_004654615.1 338210566 10869571 1230637..1231320 1 NC_015703.1 PFAM: Glycosyl transferase 2; KEGG: sjp:SJA_C1-23170 hypothetical protein; SPTR: uncharacterized protein; family 2 glycosyl transferase 1231320 10869571 Runsl_1052 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004654615.1 1230637 D 761193 CDS YP_004654616.1 338210567 10869572 1231374..1231631 1 NC_015703.1 COGs: COG0527 Aspartokinase; InterPro IPR001341:IPR001048; KEGG: dfe:Dfer_3817 aspartate kinase; PFAM: Aspartate/glutamate/uridylate kinase; SPTR: Aspartokinase; TIGRFAM: Aspartate kinase region; hypothetical protein 1231631 10869572 Runsl_1053 Runella slithyformis DSM 19594 hypothetical protein YP_004654616.1 1231374 D 761193 CDS YP_004654617.1 338210568 10869573 1231686..1233044 1 NC_015703.1 PFAM: Amino acid kinase; TIGRFAM: aspartate kinase; COGs: COG1943 Transposase and inactivated derivatives; KEGG: lby:Lbys_0121 hypothetical protein; SPTR: uncharacterized protein; aspartate kinase 1233044 10869573 Runsl_1054 Runella slithyformis DSM 19594 aspartate kinase YP_004654617.1 1231686 D 761193 CDS YP_004654618.1 338210569 10869574 1233714..1234148 1 NC_015703.1 PFAM: Transposase IS200 like; COGs: COG0172 Seryl-tRNA synthetase; InterPro IPR002317:IPR015866:IPR002314; KEGG: sli:Slin_5630 seryl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Seryl-tRNA synthetase, class IIa, N-terminal; PRIAM: Serine--tRNA ligase; SPTR: Seryl-tRNA synthetase; TIGRFAM: Seryl-tRNA synthetase, class IIa; hypothetical protein 1234148 10869574 Runsl_1055 Runella slithyformis DSM 19594 hypothetical protein YP_004654618.1 1233714 D 761193 CDS YP_004654619.1 338210570 10869575 1234557..1235825 1 NC_015703.1 PFAM: Seryl-tRNA synthetase N-terminal domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: seryl-tRNA synthetase; KEGG: bth:BT_4152 beta-galactosidase I; SPTR: uncharacterized protein; manually curated; seryl-tRNA synthetase 1235825 10869575 Runsl_1056 Runella slithyformis DSM 19594 seryl-tRNA synthetase YP_004654619.1 1234557 D 761193 CDS YP_004654620.1 338210571 10869576 complement(1235901..1236830) 1 NC_015703.1 PFAM: Glycosyl hydrolases family 43; COGs: COG3238 conserved hypothetical protein; InterPro IPR006750; KEGG: dfe:Dfer_4040 protein of unknown function DUF606; PFAM: Protein of unknown function DUF606; SPTR: uncharacterized protein; beta-galactosidase I 1236830 10869576 Runsl_1057 Runella slithyformis DSM 19594 beta-galactosidase I YP_004654620.1 1235901 R 761193 CDS YP_004654621.1 338210572 10869577 complement(1236890..1237336) 1 NC_015703.1 PFAM: Protein of unknown function, DUF606; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: sli:Slin_4653 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein 1237336 10869577 Runsl_1058 Runella slithyformis DSM 19594 hypothetical protein YP_004654621.1 1236890 R 761193 CDS YP_004654622.1 338210573 10869578 complement(1237398..1238645) 1 NC_015703.1 PFAM: Predicted permease; COGs: COG2815 conserved hypothetical protein; InterPro IPR005543; KEGG: sli:Slin_0294 PASTA domain containing protein; PFAM: PASTA; SMART: PASTA; SPTR: PASTA domain containing protein; hypothetical protein 1238645 10869578 Runsl_1059 Runella slithyformis DSM 19594 hypothetical protein YP_004654622.1 1237398 R 761193 CDS YP_004654623.1 338210574 10869579 1238971..1239762 1 NC_015703.1 PFAM: PASTA domain; KEGG: sli:Slin_0295 hypothetical protein; SPTR: uncharacterized protein; protein PASTA domain-containing protein 1239762 10869579 Runsl_1060 Runella slithyformis DSM 19594 protein PASTA domain-containing protein YP_004654623.1 1238971 D 761193 CDS YP_004654624.1 338210575 10869580 1239890..1241701 1 NC_015703.1 COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: dfe:Dfer_2923 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Rhodanese domain protein; hypothetical protein 1241701 10869580 Runsl_1061 Runella slithyformis DSM 19594 hypothetical protein YP_004654624.1 1239890 D 761193 CDS YP_004654625.1 338210576 10869581 1241791..1242087 1 NC_015703.1 PFAM: Rhodanese-like domain; COGs: COG0233 Ribosome recycling factor; HAMAP: Ribosome recycling factor, bacterial-like; InterPro IPR015998:IPR002661; KEGG: sli:Slin_2387 ribosome recycling factor; PFAM: Ribosome recycling factor; SPTR: Ribosome-recycling factor; TIGRFAM: Ribosome recycling factor; rhodanese-like protein 1242087 10869581 Runsl_1062 Runella slithyformis DSM 19594 rhodanese-like protein YP_004654625.1 1241791 D 761193 CDS YP_004654626.1 338210577 10869582 complement(1242174..1242734) 1 NC_015703.1 PFAM: Ribosome recycling factor; TIGRFAM: ribosome recycling factor; KEGG: cyc:PCC7424_4118 hypothetical protein; SPTR: uncharacterized protein; ribosome-recycling factor 1242734 10869582 Runsl_1063 Runella slithyformis DSM 19594 ribosome-recycling factor YP_004654626.1 1242174 R 761193 CDS YP_004654627.1 338210578 10869583 complement(1242745..1243245) 1 NC_015703.1 KEGG: cyc:PCC7424_4117 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1243245 10869583 Runsl_1064 Runella slithyformis DSM 19594 hypothetical protein YP_004654627.1 1242745 R 761193 CDS YP_004654628.1 338210579 10869584 complement(1243242..1244561) 1 NC_015703.1 COGs: COG0528 Uridylate kinase; InterPro IPR015963:IPR001048; KEGG: dfe:Dfer_2998 uridylate kinase; PFAM: Aspartate/glutamate/uridylate kinase; PRIAM: UMP kinase; SPTR: Uridylate kinase; TIGRFAM: Uridylate kinase, bacteria; hypothetical protein 1244561 10869584 Runsl_1065 Runella slithyformis DSM 19594 hypothetical protein YP_004654628.1 1243242 R 761193 CDS YP_004654629.1 338210580 10869585 complement(1244565..1245287) 1 NC_015703.1 PFAM: Amino acid kinase; TIGRFAM: uridylate kinase; COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR000089; KEGG: sli:Slin_2390 biotin/lipoyl attachment domain-containing protein; PFAM: Biotin/lipoyl attachment; SPTR: Biotin/lipoyl attachment domain-containing protein; uridylate kinase 1245287 10869585 Runsl_1066 Runella slithyformis DSM 19594 uridylate kinase YP_004654629.1 1244565 R 761193 CDS YP_004654630.1 338210581 10869586 complement(1245352..1245852) 1 NC_015703.1 PFAM: Biotin-requiring enzyme; InterPro IPR000620; KEGG: sli:Slin_2391 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: uncharacterized protein; biotin/lipoyl attachment domain-containing protein 1245852 10869586 Runsl_1067 Runella slithyformis DSM 19594 biotin/lipoyl attachment domain-containing protein YP_004654630.1 1245352 R 761193 CDS YP_004654631.1 338210582 10869587 complement(1245893..1246804) 1 NC_015703.1 PFAM: EamA-like transporter family; KEGG: sli:Slin_6546 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1246804 10869587 Runsl_1068 Runella slithyformis DSM 19594 hypothetical protein YP_004654631.1 1245893 R 761193 CDS YP_004654632.1 338210583 10869588 complement(1246877..1248163) 1 NC_015703.1 COGs: COG0793 Periplasmic protease; InterPro IPR011659:IPR005151; KEGG: lby:Lbys_3108 peptidase S41; PFAM: Peptidase S41; WD40-like Beta Propeller; SPTR: Peptidase S41; hypothetical protein 1248163 10869588 Runsl_1069 Runella slithyformis DSM 19594 hypothetical protein YP_004654632.1 1246877 R 761193 CDS YP_004654633.1 338210584 10869589 1248308..1251547 1 NC_015703.1 PFAM: WD40-like Beta Propeller Repeat; Peptidase S41; peptidase S41 1251547 10869589 Runsl_1070 Runella slithyformis DSM 19594 peptidase S41 YP_004654633.1 1248308 D 761193 CDS YP_004654634.1 338210585 10869590 complement(1251605..1251748) 1 NC_015703.1 KEGG: dfe:Dfer_4933 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1251748 10869590 Runsl_1071 Runella slithyformis DSM 19594 hypothetical protein YP_004654634.1 1251605 R 761193 CDS YP_004654635.1 338210586 10869591 complement(1251750..1252193) 1 NC_015703.1 COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR004602:IPR003439; KEGG: dfe:Dfer_3281 excinuclease ABC, A subunit; PFAM: ABC transporter-like; SPTR: Excinuclease ABC, A subunit; TIGRFAM: Excinuclease ABC, A subunit; hypothetical protein 1252193 10869591 Runsl_1072 Runella slithyformis DSM 19594 hypothetical protein YP_004654635.1 1251750 R 761193 CDS YP_004654636.1 338210587 10869592 1252443..1255307 1 NC_015703.1 PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit; KEGG: ppd:Ppro_1272 hypothetical protein; SPTR: uncharacterized protein; excinuclease ABC subunit A 1255307 10869592 Runsl_1073 Runella slithyformis DSM 19594 excinuclease ABC subunit A YP_004654636.1 1252443 D 761193 CDS YP_004654637.1 338210588 10869593 1255654..1256217 1 NC_015703.1 KEGG: dfe:Dfer_5688 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1256217 10869593 Runsl_1074 Runella slithyformis DSM 19594 hypothetical protein YP_004654637.1 1255654 D 761193 CDS YP_004654638.1 338210589 10869594 complement(1256506..1256970) 1 NC_015703.1 COGs: COG2234 aminopeptidase; InterPro IPR003137:IPR007484; KEGG: sli:Slin_0518 glutamate carboxypeptidase II; PFAM: Peptidase M28; Protease-associated PA; PRIAM: Glutamate carboxypeptidase II; SPTR: Glutamate carboxypeptidase II; hypothetical protein 1256970 10869594 Runsl_1075 Runella slithyformis DSM 19594 hypothetical protein YP_004654638.1 1256506 R 761193 CDS YP_004654639.1 338210590 10869595 1257231..1259408 1 NC_015703.1 PFAM: PA domain; Peptidase M28; Transferrin receptor-like dimerisation domain; InterPro IPR011429:IPR011444; KEGG: sli:Slin_5453 hypothetical protein; PFAM: Protein of unknown function DUF1549; Cytochrome C, Planctomycete; SPTR: uncharacterized protein; glutamate carboxypeptidase II 1259408 10869595 Runsl_1076 Runella slithyformis DSM 19594 glutamate carboxypeptidase II YP_004654639.1 1257231 D 761193 CDS YP_004654640.1 338210591 10869596 1259490..1262249 1 NC_015703.1 PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553); InterPro IPR006311:IPR010869; KEGG: phe:Phep_2714 hypothetical protein; PFAM: Protein of unknown function DUF1501; SPTR: Twin-arginine translocation pathway signal; hypothetical protein 1262249 10869596 Runsl_1077 Runella slithyformis DSM 19594 hypothetical protein YP_004654640.1 1259490 D 761193 CDS YP_004654641.1 338210592 10869597 1262251..1263735 1 NC_015703.1 PFAM: Protein of unknown function (DUF1501); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG2013 conserved hypothetical protein; InterPro IPR002838; KEGG: dfe:Dfer_4264 protein of unknown function DUF124; PFAM: Protein of unknown function DUF124; SPTR: uncharacterized protein; TIGRFAM: Protein of unknown function DUF124; hypothetical protein 1263735 10869597 Runsl_1078 Runella slithyformis DSM 19594 hypothetical protein YP_004654641.1 1262251 D 761193 CDS YP_004654642.1 338210593 10869598 complement(1263901..1264680) 1 NC_015703.1 PFAM: Protein of unknown function DUF124; TIGRFAM: TIGR00266 family protein; KEGG: sli:Slin_4892 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1264680 10869598 Runsl_1079 Runella slithyformis DSM 19594 hypothetical protein YP_004654642.1 1263901 R 761193 CDS YP_004654643.1 338210594 10869599 complement(1264694..1264900) 1 NC_015703.1 hypothetical protein 1264900 10869599 Runsl_1080 Runella slithyformis DSM 19594 hypothetical protein YP_004654643.1 1264694 R 761193 CDS YP_004654644.1 338210595 10869600 1265084..1266412 1 NC_015703.1 COGs: COG0538 Isocitrate dehydrogenase; InterPro IPR004790:IPR001804; KEGG: dfe:Dfer_3730 isocitrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; PRIAM: Isocitrate dehydrogenase (NADP(+)); SPTR: Isocitrate dehydrogenase [NADP]; TIGRFAM: Isocitrate dehydrogenase NADP-dependent, eukaryotic; hypothetical protein 1266412 10869600 Runsl_1081 Runella slithyformis DSM 19594 hypothetical protein YP_004654644.1 1265084 D 761193 CDS YP_004654645.1 338210596 10869601 1266475..1267692 1 NC_015703.1 PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, eukaryotic type; KEGG: dfe:Dfer_3845 hypothetical protein; SPTR: uncharacterized protein; isocitrate dehydrogenase 1267692 10869601 Runsl_1082 Runella slithyformis DSM 19594 isocitrate dehydrogenase YP_004654645.1 1266475 D 761193 CDS YP_004654646.1 338210597 10869602 1267770..1268696 1 NC_015703.1 hypothetical protein 1268696 10869602 Runsl_1083 Runella slithyformis DSM 19594 hypothetical protein YP_004654646.1 1267770 D 761193 CDS YP_004654647.1 338210598 10869603 1268888..1269118 1 NC_015703.1 COGs: COG4115 conserved hypothetical protein; InterPro IPR009614; KEGG: bsa:Bacsa_1800 addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin, Txe/YoeB; SPTR: uncharacterized protein; TIGRFAM: Addiction module toxin, Txe/YoeB; hypothetical protein 1269118 10869603 Runsl_1084 Runella slithyformis DSM 19594 hypothetical protein YP_004654647.1 1268888 D 761193 CDS YP_004654648.1 338210599 10869604 1269115..1269384 1 NC_015703.1 PFAM: Plasmid encoded toxin Txe; TIGRFAM: toxin-antitoxin system, toxin component, Txe/YoeB family; addiction module toxin, RelE/StbE family; KEGG: sus:Acid_4693 hypothetical protein; SPTR: uncharacterized protein; Txe/YoeB family addiction module toxin 1269384 10869604 Runsl_1085 Runella slithyformis DSM 19594 Txe/YoeB family addiction module toxin YP_004654648.1 1269115 D 761193 CDS YP_004654649.1 338210600 10869605 complement(1269500..1269913) 1 NC_015703.1 COGs: COG1073 Hydrolase of the alpha/beta superfamily; InterPro IPR000073; KEGG: fbc:FB2170_11191 hypothetical protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Hydrolase with alpha/beta fold protein; hypothetical protein 1269913 10869605 Runsl_1086 Runella slithyformis DSM 19594 hypothetical protein YP_004654649.1 1269500 R 761193 CDS YP_004654650.1 338210601 10869606 complement(1269985..1270839) 1 NC_015703.1 PFAM: lysophospholipase; alpha/beta hydrolase 1270839 10869606 Runsl_1087 Runella slithyformis DSM 19594 alpha/beta hydrolase YP_004654650.1 1269985 R 761193 CDS YP_004654651.1 338210602 10869607 complement(1270845..1271018) 1 NC_015703.1 COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: cpi:Cpin_1928 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; PRIAM: Xylulokinase; SPTR: Carbohydrate kinase FGGY; hypothetical protein 1271018 10869607 Runsl_1088 Runella slithyformis DSM 19594 hypothetical protein YP_004654651.1 1270845 R 761193 CDS YP_004654652.1 338210603 10869608 1271045..1272520 1 NC_015703.1 PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; xylulokinase 1272520 10869608 Runsl_1089 Runella slithyformis DSM 19594 xylulokinase YP_004654652.1 1271045 D 761193 CDS YP_004654653.1 338210604 10869609 1272624..1272794 1 NC_015703.1 COGs: COG4731 conserved hypothetical protein; InterPro IPR019223; KEGG: sli:Slin_1853 hypothetical protein; PFAM: Protein of unknown function DUF2147; SPTR: uncharacterized protein; hypothetical protein 1272794 10869609 Runsl_1090 Runella slithyformis DSM 19594 hypothetical protein YP_004654653.1 1272624 D 761193 CDS YP_004654654.1 338210605 10869610 1272930..1273370 1 NC_015703.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2147); COGs: COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain); InterPro IPR006367; KEGG: sli:Slin_0478 siroheme synthase; SPTR: Siroheme synthase; TIGRFAM: Sirohaem synthase, N-terminal; hypothetical protein 1273370 10869610 Runsl_1091 Runella slithyformis DSM 19594 hypothetical protein YP_004654654.1 1272930 D 761193 CDS YP_004654655.1 338210606 10869611 1273397..1273963 1 NC_015703.1 TIGRFAM: siroheme synthase, N-terminal domain; KEGG: sli:Slin_2835 hypothetical protein; SPTR: uncharacterized protein; siroheme synthase 1273963 10869611 Runsl_1092 Runella slithyformis DSM 19594 siroheme synthase YP_004654655.1 1273397 D 761193 CDS YP_004654656.1 338210607 10869612 complement(1273970..1274293) 1 NC_015703.1 COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: dfe:Dfer_2622 glycosyl transferase 9; PFAM: Glycosyl transferase, family 9; SPTR: Glycosyl transferase 9; hypothetical protein 1274293 10869612 Runsl_1093 Runella slithyformis DSM 19594 hypothetical protein YP_004654656.1 1273970 R 761193 CDS YP_004654657.1 338210608 10869613 1274372..1275358 1 NC_015703.1 PFAM: Glycosyltransferase 9 (heptosyltransferase); COGs: COG1956 GAF domain-containing protein; KEGG: sli:Slin_5928 GAF domain-containing protein; SPTR: GAF domain-containing protein; glycosyl transferase family protein 1275358 10869613 Runsl_1094 Runella slithyformis DSM 19594 glycosyl transferase family protein YP_004654657.1 1274372 D 761193 CDS YP_004654658.1 338210609 10869614 complement(1275626..1276111) 1 NC_015703.1 manually curated; GAF domain-containing protein 1276111 10869614 Runsl_1095 Runella slithyformis DSM 19594 GAF domain-containing protein YP_004654658.1 1275626 R 761193 CDS YP_004654659.1 338210610 10869616 1276759..1276998 1 NC_015703.1 InterPro IPR002035; KEGG: dfe:Dfer_3846 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: von Willebrand factor type A; hypothetical protein 1276998 10869616 Runsl_1097 Runella slithyformis DSM 19594 hypothetical protein YP_004654659.1 1276759 D 761193 CDS YP_004654660.1 338210611 10869617 1277077..1278111 1 NC_015703.1 PFAM: von Willebrand factor type A domain; COGs: COG1404 Subtilisin-like serine protease; InterPro IPR010259:IPR000209; KEGG: sli:Slin_1710 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Proteinase inhibitor I9, subtilisin propeptide; PRIAM: Aqualysin 1; SPTR: Peptidase S8 and S53 subtilisin kexin sedolisin; von Willebrand factor A 1278111 10869617 Runsl_1098 Runella slithyformis DSM 19594 von Willebrand factor A YP_004654660.1 1277077 D 761193 CDS YP_004654661.1 338210612 10869618 complement(1278086..1279300) 1 NC_015703.1 PFAM: Peptidase inhibitor I9; Subtilase; InterPro IPR005632; KEGG: dfe:Dfer_3973 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); aqualysin 1 1279300 10869618 Runsl_1099 Runella slithyformis DSM 19594 aqualysin 1 YP_004654661.1 1278086 R 761193 CDS YP_004654662.1 338210613 10869619 complement(1279490..1280098) 1 NC_015703.1 PFAM: Outer membrane protein (OmpH-like); KEGG: sli:Slin_5972 hypothetical protein; SPTR: uncharacterized protein; outer membrane chaperone Skp 1280098 10869619 Runsl_1100 Runella slithyformis DSM 19594 outer membrane chaperone Skp YP_004654662.1 1279490 R 761193 CDS YP_004654663.1 338210614 10869620 complement(1280335..1281720) 1 NC_015703.1 PFAM: PAP2 superfamily; manually curated; hypothetical protein 1281720 10869620 Runsl_1101 Runella slithyformis DSM 19594 hypothetical protein YP_004654663.1 1280335 R 761193 CDS YP_004654664.1 338210615 10869622 complement(1282294..1283688) 1 NC_015703.1 PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucosamine mutase; KEGG: dfe:Dfer_3940 hypothetical protein; SPTR: uncharacterized protein; phosphoglucosamine mutase 1283688 10869622 Runsl_1103 Runella slithyformis DSM 19594 phosphoglucosamine mutase YP_004654664.1 1282294 R 761193 CDS YP_004654665.1 338210616 10869623 1283925..1284359 1 NC_015703.1 COGs: COG2936 acyl esterase; InterPro IPR005674:IPR009894:IPR000383:IPR013736; KEGG: sli:Slin_0314 X-Pro dipeptidyl-peptidase domain protein; PFAM: Peptidase S15/CocE/NonD, C-terminal; Peptidase S15; Exported; SPTR: X-Pro dipeptidyl-peptidase domain protein; TIGRFAM: CocE/NonD hydrolase; hypothetical protein 1284359 10869623 Runsl_1104 Runella slithyformis DSM 19594 hypothetical protein YP_004654665.1 1283925 D 761193 CDS YP_004654666.1 338210617 10869624 1284407..1286497 1 NC_015703.1 PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: hydrolase, CocE/NonD family; KEGG: sli:Slin_0177 hypothetical protein; SPTR: Conserved repeat domain protein; hydrolase 1286497 10869624 Runsl_1105 Runella slithyformis DSM 19594 hydrolase YP_004654666.1 1284407 D 761193 CDS YP_004654667.1 338210618 10869625 1286680..1287309 1 NC_015703.1 COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154:IPR013149; KEGG: fbc:FB2170_14683 oxidoreductase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SPTR: Alcohol dehydrogenase zinc-binding domain protein; hypothetical protein 1287309 10869625 Runsl_1106 Runella slithyformis DSM 19594 hypothetical protein YP_004654667.1 1286680 D 761193 CDS YP_004654668.1 338210619 10869626 1287343..1288314 1 NC_015703.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; KEGG: sli:Slin_1168 hypothetical protein; SPTR: uncharacterized protein; NADPH:quinone reductase 1288314 10869626 Runsl_1107 Runella slithyformis DSM 19594 NADPH:quinone reductase YP_004654668.1 1287343 D 761193 CDS YP_004654669.1 338210620 10869627 complement(1288367..1289797) 1 NC_015703.1 InterPro IPR012910:IPR000531; KEGG: sli:Slin_1167 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein 1289797 10869627 Runsl_1108 Runella slithyformis DSM 19594 hypothetical protein YP_004654669.1 1288367 R 761193 CDS YP_004654670.1 338210621 10869628 complement(1289818..1292970) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: sli:Slin_1165 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 1292970 10869628 Runsl_1109 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004654670.1 1289818 R 761193 CDS YP_004654671.1 338210622 10869629 complement(1293360..1294889) 1 NC_015703.1 InterPro IPR012910:IPR000531; KEGG: sli:Slin_1166 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: outer membrane protein, probably involved in nutrient binding; hypothetical protein 1294889 10869629 Runsl_1110 Runella slithyformis DSM 19594 hypothetical protein YP_004654671.1 1293360 R 761193 CDS YP_004654672.1 338210623 10869630 complement(1294916..1298110) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG4330 membrane protein; InterPro IPR009793; KEGG: dfe:Dfer_4887 protein of unknown function DUF1361; PFAM: Protein of unknown function DUF1361; SPTR: uncharacterized protein; TonB-dependent receptor plug 1298110 10869630 Runsl_1111 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004654672.1 1294916 R 761193 CDS YP_004654673.1 338210624 10869631 1298649..1299284 1 NC_015703.1 PFAM: Protein of unknown function (DUF1361); COGs: COG0818 Diacylglycerol kinase; InterPro IPR000829; KEGG: sli:Slin_1186 diacylglycerol kinase; PFAM: Diacylglycerol kinase, prokaryotic; SPTR: Diacylglycerol kinase; hypothetical protein 1299284 10869631 Runsl_1112 Runella slithyformis DSM 19594 hypothetical protein YP_004654673.1 1298649 D 761193 CDS YP_004654674.1 338210625 10869632 1299324..1299701 1 NC_015703.1 PFAM: Prokaryotic diacylglycerol kinase; KEGG: sli:Slin_1185 hypothetical protein; SPTR: uncharacterized protein; diacylglycerol kinase 1299701 10869632 Runsl_1113 Runella slithyformis DSM 19594 diacylglycerol kinase YP_004654674.1 1299324 D 761193 CDS YP_004654675.1 338210626 10869633 1299707..1300351 1 NC_015703.1 InterPro IPR001845; KEGG: sli:Slin_1184 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family; hypothetical protein 1300351 10869633 Runsl_1114 Runella slithyformis DSM 19594 hypothetical protein YP_004654675.1 1299707 D 761193 CDS YP_004654676.1 338210627 10869634 1300388..1300681 1 NC_015703.1 PFAM: Bacterial regulatory protein, arsR family; KEGG: sli:Slin_0198 hypothetical protein; SPTR: uncharacterized protein; regulatory protein ArsR 1300681 10869634 Runsl_1115 Runella slithyformis DSM 19594 regulatory protein ArsR YP_004654676.1 1300388 D 761193 CDS YP_004654677.1 338210628 10869635 complement(1300816..1301685) 1 NC_015703.1 KEGG: mtt:Ftrac_2315 TonB family protein; SPTR: TonB family protein; hypothetical protein 1301685 10869635 Runsl_1116 Runella slithyformis DSM 19594 hypothetical protein YP_004654677.1 1300816 R 761193 CDS YP_004654678.1 338210629 10869636 complement(1301806..1303098) 1 NC_015703.1 PFAM: Gram-negative bacterial tonB protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_0159 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein 1303098 10869636 Runsl_1117 Runella slithyformis DSM 19594 hypothetical protein YP_004654678.1 1301806 R 761193 CDS YP_004654679.1 338210630 10869637 complement(1303091..1303675) 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; InterPro IPR002035; KEGG: dfe:Dfer_0158 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: von Willebrand factor type A; ECF subfamily RNA polymerase sigma-24 subunit 1303675 10869637 Runsl_1118 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004654679.1 1303091 R 761193 CDS YP_004654680.1 338210631 10869638 1303953..1305821 1 NC_015703.1 PFAM: von Willebrand factor; von Willebrand factor type A domain; Domain of unknown function (DUF3520); KEGG: dfe:Dfer_2485 hypothetical protein; SPTR: uncharacterized protein; von Willebrand factor A 1305821 10869638 Runsl_1119 Runella slithyformis DSM 19594 von Willebrand factor A YP_004654680.1 1303953 D 761193 CDS YP_004654681.1 338210632 10869639 complement(1306035..1306670) 1 NC_015703.1 COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: dfe:Dfer_2590 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; hypothetical protein 1306670 10869639 Runsl_1120 Runella slithyformis DSM 19594 hypothetical protein YP_004654681.1 1306035 R 761193 CDS YP_004654682.1 338210633 10869640 complement(1306812..1307522) 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG2020 protein-S-isoprenylcysteine methyltransferase; KEGG: dae:Dtox_2171 hypothetical protein; SPTR: uncharacterized protein; 3-oxoacyl-ACP reductase 1307522 10869640 Runsl_1121 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004654682.1 1306812 R 761193 CDS YP_004654683.1 338210634 10869641 complement(1307559..1308152) 1 NC_015703.1 PFAM: NnrU protein; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sli:Slin_3274 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; hypothetical protein 1308152 10869641 Runsl_1122 Runella slithyformis DSM 19594 hypothetical protein YP_004654683.1 1307559 R 761193 CDS YP_004654684.1 338210635 10869642 1308173..1309882 1 NC_015703.1 PFAM: Beta-lactamase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: sli:Slin_4717 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; beta-lactamase 1309882 10869642 Runsl_1123 Runella slithyformis DSM 19594 beta-lactamase YP_004654684.1 1308173 D 761193 CDS YP_004654685.1 338210636 10869643 1310013..1311359 1 NC_015703.1 PFAM: Oxidoreductase, C-terminal alpha/beta domain; Oxidoreductase, NAD-binding Rossmann fold; COGs: COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; InterPro IPR010918; KEGG: sli:Slin_6005 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, C-terminal; PRIAM: Phosphoribosylformylglycinamidine cyclo-ligase; SPTR: Phosphoribosylformylglycinamidine cyclo-ligase; oxidoreductase domain-containing protein 1311359 10869643 Runsl_1124 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004654685.1 1310013 D 761193 CDS YP_004654686.1 338210637 10869644 1311558..1312724 1 NC_015703.1 PFAM: AIR synthase related protein, C-terminal domain; KEGG: cyh:Cyan8802_4363 hypothetical protein; SPTR: uncharacterized protein; phosphoribosylformylglycinamidine cyclo-ligase 1312724 10869644 Runsl_1125 Runella slithyformis DSM 19594 phosphoribosylformylglycinamidine cyclo-ligase YP_004654686.1 1311558 D 761193 CDS YP_004654687.1 338210638 10869645 1312745..1312993 1 NC_015703.1 hypothetical protein 1312993 10869645 Runsl_1126 Runella slithyformis DSM 19594 hypothetical protein YP_004654687.1 1312745 D 761193 CDS YP_004654688.1 338210639 10869646 complement(1313218..1313496) 1 NC_015703.1 KEGG: ent:Ent638_1339 hypothetical protein; SPTR: Bacterial SH3 domain-containing protein; hypothetical protein 1313496 10869646 Runsl_1127 Runella slithyformis DSM 19594 hypothetical protein YP_004654688.1 1313218 R 761193 CDS YP_004654689.1 338210640 10869647 complement(1313552..1314271) 1 NC_015703.1 COGs: COG0013 Alanyl-tRNA synthetase; InterPro IPR002318:IPR018164:IPR012947:IPR003156; KEGG: dfe:Dfer_5667 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1; SPTR: Alanyl-tRNA synthetase; TIGRFAM: Alanyl-tRNA synthetase, class IIc; hypothetical protein 1314271 10869647 Runsl_1128 Runella slithyformis DSM 19594 hypothetical protein YP_004654689.1 1313552 R 761193 CDS YP_004654690.1 338210641 10869648 1314605..1317259 1 NC_015703.1 PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase; alanyl-tRNA synthetase 1317259 10869648 Runsl_1129 Runella slithyformis DSM 19594 alanyl-tRNA synthetase YP_004654690.1 1314605 D 761193 CDS YP_004654691.1 338210642 10869649 complement(1317428..1317730) 1 NC_015703.1 COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: sli:Slin_1830 glucose/sorbosone dehydrogenase; SPTR: Glucose/sorbosone dehydrogenase-like protein; hypothetical protein 1317730 10869649 Runsl_1130 Runella slithyformis DSM 19594 hypothetical protein YP_004654691.1 1317428 R 761193 CDS YP_004654692.1 338210643 10869650 1317886..1319292 1 NC_015703.1 PFAM: Glucose / Sorbosone dehydrogenase; KEGG: dfe:Dfer_4012 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1319292 10869650 Runsl_1131 Runella slithyformis DSM 19594 hypothetical protein YP_004654692.1 1317886 D 761193 CDS YP_004654693.1 338210644 10869651 complement(1319302..1320156) 1 NC_015703.1 COGs: COG0628 permease; InterPro IPR002549; KEGG: dfe:Dfer_4013 protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; SPTR: uncharacterized protein; hypothetical protein 1320156 10869651 Runsl_1132 Runella slithyformis DSM 19594 hypothetical protein YP_004654693.1 1319302 R 761193 CDS YP_004654694.1 338210645 10869652 1320238..1321332 1 NC_015703.1 PFAM: Domain of unknown function DUF20; KEGG: sli:Slin_3273 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1321332 10869652 Runsl_1133 Runella slithyformis DSM 19594 hypothetical protein YP_004654694.1 1320238 D 761193 CDS YP_004654695.1 338210646 10869653 1321442..1322494 1 NC_015703.1 PFAM: Planctomycete cytochrome C; TIGRFAM: conserved hypothetical protein, HNE_0200 family; COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterPro IPR003660:IPR013767:IPR003594:IPR000014; KEGG: sli:Slin_2346 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; PAS fold; SMART: ATP-binding region, ATPase-like; HAMP linker domain; PAS; SPTR: Two-component system sensor histidine kinase; hypothetical protein 1322494 10869653 Runsl_1134 Runella slithyformis DSM 19594 hypothetical protein YP_004654695.1 1321442 D 761193 CDS YP_004654696.1 338210647 10869654 complement(1322502..1323785) 1 NC_015703.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; KEGG: fjo:Fjoh_4705 hypothetical protein; SPTR: uncharacterized protein; multi-sensor signal transduction histidine kinase 1323785 10869654 Runsl_1135 Runella slithyformis DSM 19594 multi-sensor signal transduction histidine kinase YP_004654696.1 1322502 R 761193 CDS YP_004654697.1 338210648 10869655 1323818..1324501 1 NC_015703.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR002078:IPR002197:IPR003593; KEGG: sli:Slin_2347 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family; hypothetical protein 1324501 10869655 Runsl_1136 Runella slithyformis DSM 19594 hypothetical protein YP_004654697.1 1323818 D 761193 CDS YP_004654698.1 338210649 10869656 complement(1324540..1325961) 1 NC_015703.1 PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: sli:Slin_2348 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; Fis family transcriptional regulator 1325961 10869656 Runsl_1137 Runella slithyformis DSM 19594 Fis family transcriptional regulator YP_004654698.1 1324540 R 761193 CDS YP_004654699.1 338210650 10869657 complement(1325965..1327140) 1 NC_015703.1 PFAM: Predicted permease; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dfe:Dfer_5612 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein 1327140 10869657 Runsl_1138 Runella slithyformis DSM 19594 hypothetical protein YP_004654699.1 1325965 R 761193 CDS YP_004654700.1 338210651 10869658 complement(1327147..1328397) 1 NC_015703.1 PFAM: Predicted permease; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: sli:Slin_2350 ABC transporter; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; hypothetical protein 1328397 10869658 Runsl_1139 Runella slithyformis DSM 19594 hypothetical protein YP_004654700.1 1327147 R 761193 CDS YP_004654701.1 338210652 10869659 complement(1328400..1329065) 1 NC_015703.1 PFAM: ABC transporter; TIGRFAM: bacteriocin export ABC transporter, lactococcin 972 group; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_5610 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: exported outer membrane protein; phosphonate-transporting ATPase 1329065 10869659 Runsl_1140 Runella slithyformis DSM 19594 phosphonate-transporting ATPase YP_004654701.1 1328400 R 761193 CDS YP_004654702.1 338210653 10869660 complement(1329158..1330708) 1 NC_015703.1 PFAM: Outer membrane efflux protein; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_5609 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; outer membrane efflux protein 1330708 10869660 Runsl_1141 Runella slithyformis DSM 19594 outer membrane efflux protein YP_004654702.1 1329158 R 761193 CDS YP_004654703.1 338210654 10869661 complement(1330816..1332063) 1 NC_015703.1 KEGG: cts:Ctha_0434 hypothetical protein; SPTR: uncharacterized protein; RND family efflux transporter MFP subunit 1332063 10869661 Runsl_1142 Runella slithyformis DSM 19594 RND family efflux transporter MFP subunit YP_004654703.1 1330816 R 761193 CDS YP_004654704.1 338210655 10869662 complement(1332221..1333174) 1 NC_015703.1 TIGRFAM: conserved hypothetical protein ( transposase or invertase); COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; InterPro IPR001041:IPR002888; KEGG: sli:Slin_1103 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; Ferredoxin; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: (2Fe-2S)-binding domain protein; hypothetical protein 1333174 10869662 Runsl_1143 Runella slithyformis DSM 19594 hypothetical protein YP_004654704.1 1332221 R 761193 CDS YP_004654705.1 338210656 10869663 1333423..1333887 1 NC_015703.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR006311:IPR008274; KEGG: sli:Slin_1104 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; isoquinoline 1-oxidoreductase 1333887 10869663 Runsl_1144 Runella slithyformis DSM 19594 isoquinoline 1-oxidoreductase YP_004654705.1 1333423 D 761193 CDS YP_004654706.1 338210657 10869664 1333939..1336068 1 NC_015703.1 PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR006258:IPR013027:IPR004099; KEGG: lby:Lbys_2718 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; PRIAM: Dihydrolipoyl dehydrogenase; SPTR: Dihydrolipoyl dehydrogenase; TIGRFAM: Dihydrolipoamide dehydrogenase; isoquinoline 1-oxidoreductase 1336068 10869664 Runsl_1145 Runella slithyformis DSM 19594 isoquinoline 1-oxidoreductase YP_004654706.1 1333939 D 761193 CDS YP_004654707.1 338210658 10869665 1336197..1337591 1 NC_015703.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase; KEGG: sli:Slin_5307 hypothetical protein; SPTR: uncharacterized protein; dihydrolipoamide dehydrogenase 1337591 10869665 Runsl_1146 Runella slithyformis DSM 19594 dihydrolipoamide dehydrogenase YP_004654707.1 1336197 D 761193 CDS YP_004654708.1 338210659 10869666 1337777..1338661 1 NC_015703.1 KEGG: sli:Slin_1652 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1338661 10869666 Runsl_1147 Runella slithyformis DSM 19594 hypothetical protein YP_004654708.1 1337777 D 761193 CDS YP_004654709.1 338210660 10869667 complement(1338664..1339170) 1 NC_015703.1 KEGG: cao:Celal_1650 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1339170 10869667 Runsl_1148 Runella slithyformis DSM 19594 hypothetical protein YP_004654709.1 1338664 R 761193 CDS YP_004654710.1 338210661 10869668 complement(1339250..1340377) 1 NC_015703.1 KEGG: fps:FP0437 exopolyphosphatase; SPTR: Probable exopolyphosphatase; hypothetical protein 1340377 10869668 Runsl_1149 Runella slithyformis DSM 19594 hypothetical protein YP_004654710.1 1339250 R 761193 CDS YP_004654711.1 338210662 10869669 complement(1340414..1341565) 1 NC_015703.1 PFAM: Ppx/GppA phosphatase; hypothetical protein 1341565 10869669 Runsl_1150 Runella slithyformis DSM 19594 hypothetical protein YP_004654711.1 1340414 R 761193 CDS YP_004654712.1 338210663 10869670 complement(1341609..1342037) 1 NC_015703.1 KEGG: dfe:Dfer_4771 secreted protein; SPTR: Secreted protein; hypothetical protein 1342037 10869670 Runsl_1151 Runella slithyformis DSM 19594 hypothetical protein YP_004654712.1 1341609 R 761193 CDS YP_004654713.1 338210664 10869671 1342402..1343058 1 NC_015703.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: sli:Slin_0504 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: Response regulator receiver protein; secreted protein 1343058 10869671 Runsl_1152 Runella slithyformis DSM 19594 secreted protein YP_004654713.1 1342402 D 761193 CDS YP_004654714.1 338210665 10869672 complement(1343128..1343523) 1 NC_015703.1 PFAM: LytTr DNA-binding domain; response regulator receiver protein 1343523 10869672 Runsl_1153 Runella slithyformis DSM 19594 response regulator receiver protein YP_004654714.1 1343128 R 761193 CDS YP_004654715.1 338210666 10869673 1343648..1343842 1 NC_015703.1 COGs: COG1970 Large-conductance mechanosensitive channel; InterPro IPR001185; KEGG: sli:Slin_4749 large conductance mechanosensitive channel protein; PFAM: Large-conductance mechanosensitive channel; SPTR: Large conductance mechanosensitive channel protein; TIGRFAM: Large-conductance mechanosensitive channel; hypothetical protein 1343842 10869673 Runsl_1154 Runella slithyformis DSM 19594 hypothetical protein YP_004654715.1 1343648 D 761193 CDS YP_004654716.1 338210667 10869674 complement(1343779..1344117) 1 NC_015703.1 PFAM: Large-conductance mechanosensitive channel, MscL; TIGRFAM: large conductance mechanosensitive channel protein; KEGG: dfe:Dfer_1560 hypothetical protein; SPTR: uncharacterized protein; large conductance mechanosensitive channel protein 1344117 10869674 Runsl_1155 Runella slithyformis DSM 19594 large conductance mechanosensitive channel protein YP_004654716.1 1343779 R 761193 CDS YP_004654717.1 338210668 10869675 complement(1344174..1345076) 1 NC_015703.1 PFAM: Protein of unknown function (DUF3078); InterPro IPR008910; KEGG: sli:Slin_4747 TM helix repeat-containing protein; PFAM: Conserved TM helix; SPTR: Conserved TM helix repeat-containing protein; hypothetical protein 1345076 10869675 Runsl_1156 Runella slithyformis DSM 19594 hypothetical protein YP_004654717.1 1344174 R 761193 CDS YP_004654718.1 338210669 10869676 complement(1345108..1345941) 1 NC_015703.1 PFAM: Mechanosensitive ion channel; Conserved TM helix; hypothetical protein 1345941 10869676 Runsl_1157 Runella slithyformis DSM 19594 hypothetical protein YP_004654718.1 1345108 R 761193 CDS YP_004654719.1 338210670 10869677 complement(1345954..1346139) 1 NC_015703.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: lby:Lbys_2030 RNA polymerase, sigma-24 subunit, ecf subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein 1346139 10869677 Runsl_1158 Runella slithyformis DSM 19594 hypothetical protein YP_004654719.1 1345954 R 761193 CDS YP_004654720.1 338210671 10869678 complement(1346162..1346926) 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG0264 Translation elongation factor Ts; HAMAP: Elongation factor Ts; InterPro IPR001816:IPR000449:IPR014039; KEGG: sli:Slin_4744 translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal; SPTR: Elongation factor Ts; TIGRFAM: Translation elongation factor EFTs/EF1B; ECF subfamily RNA polymerase sigma-24 subunit 1346926 10869678 Runsl_1159 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004654720.1 1346162 R 761193 CDS YP_004654721.1 338210672 10869679 complement(1347008..1347844) 1 NC_015703.1 PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts; COGs: COG0052 Ribosomal protein S2; InterPro IPR005706:IPR001865; KEGG: sli:Slin_4743 ribosomal protein S2; PFAM: Ribosomal protein S2; SPTR: 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; elongation factor Ts 1347844 10869679 Runsl_1160 Runella slithyformis DSM 19594 elongation factor Ts YP_004654721.1 1347008 R 761193 CDS YP_004654722.1 338210673 10869680 complement(1348100..1348906) 1 NC_015703.1 PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type; COGs: COG0103 Ribosomal protein S9; InterPro IPR000754; KEGG: sli:Slin_4742 ribosomal protein S9; PFAM: Ribosomal protein S9; SPTR: 30S ribosomal protein S9; 30S ribosomal protein S2 1348906 10869680 Runsl_1161 Runella slithyformis DSM 19594 30S ribosomal protein S2 YP_004654722.1 1348100 R 761193 CDS YP_004654723.1 338210674 10869681 complement(1349080..1349466) 1 NC_015703.1 PFAM: Ribosomal protein S9/S16; COGs: COG0102 Ribosomal protein L13; InterPro IPR005823:IPR005822; KEGG: dfe:Dfer_3497 ribosomal protein L13; PFAM: Ribosomal protein L13; SPTR: 50S ribosomal protein L13; TIGRFAM: Ribosomal protein L13, bacterial-type; 30S ribosomal protein S9 1349466 10869681 Runsl_1162 Runella slithyformis DSM 19594 30S ribosomal protein S9 YP_004654723.1 1349080 R 761193 CDS YP_004654724.1 338210675 10869682 complement(1349522..1349965) 1 NC_015703.1 PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type; COGs: COG0029 Aspartate oxidase; InterPro IPR005288:IPR003953; KEGG: dfe:Dfer_4734 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; PRIAM: L-aspartate oxidase; SPTR: L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; 50S ribosomal protein L13 1349965 10869682 Runsl_1163 Runella slithyformis DSM 19594 50S ribosomal protein L13 YP_004654724.1 1349522 R 761193 CDS YP_004654725.1 338210676 10869683 1350205..1351788 1 NC_015703.1 PFAM: domain; FAD binding domain; TIGRFAM: L-aspartate oxidase; KEGG: sli:Slin_3395 hypothetical protein; SPTR: uncharacterized protein; L-aspartate oxidase 1351788 10869683 Runsl_1164 Runella slithyformis DSM 19594 L-aspartate oxidase YP_004654725.1 1350205 D 761193 CDS YP_004654726.1 338210677 10869684 1351956..1353215 1 NC_015703.1 COGs: COG0684 Demethylmenaquinone methyltransferase; KEGG: dfe:Dfer_2455 demethylmenaquinone methyltransferase-like protein; SPTR: Demethylmenaquinone methyltransferase-like protein; hypothetical protein 1353215 10869684 Runsl_1165 Runella slithyformis DSM 19594 hypothetical protein YP_004654726.1 1351956 D 761193 CDS YP_004654727.1 338210678 10869685 complement(1353265..1354179) 1 NC_015703.1 PFAM: Demethylmenaquinone methyltransferase; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341:IPR013342; KEGG: sli:Slin_6070 galactonate dehydratase; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; PRIAM: Galactonate dehydratase; SPTR: Galactonate dehydratase; demethylmenaquinone methyltransferase-like protein 1354179 10869685 Runsl_1166 Runella slithyformis DSM 19594 demethylmenaquinone methyltransferase-like protein YP_004654727.1 1353265 R 761193 CDS YP_004654728.1 338210679 10869686 1354472..1355905 1 NC_015703.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; KEGG: dfe:Dfer_5070 hypothetical protein; SPTR: uncharacterized protein; galactonate dehydratase 1355905 10869686 Runsl_1167 Runella slithyformis DSM 19594 galactonate dehydratase YP_004654728.1 1354472 D 761193 CDS YP_004654729.1 338210680 10869687 1356031..1356447 1 NC_015703.1 InterPro IPR006260; KEGG: dfe:Dfer_3658 TonB family protein; SPTR: TonB family protein; TIGRFAM: TonB, C-terminal; hypothetical protein 1356447 10869687 Runsl_1168 Runella slithyformis DSM 19594 hypothetical protein YP_004654729.1 1356031 D 761193 CDS YP_004654730.1 338210681 10869688 complement(1356459..1358003) 1 NC_015703.1 PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; TonB family protein 1358003 10869688 Runsl_1169 Runella slithyformis DSM 19594 TonB family protein YP_004654730.1 1356459 R 761193 CDS YP_004654731.1 338210682 10869689 1358144..1359418 1 NC_015703.1 COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sli:Slin_3517 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; hypothetical protein 1359418 10869689 Runsl_1170 Runella slithyformis DSM 19594 hypothetical protein YP_004654731.1 1358144 D 761193 CDS YP_004654732.1 338210683 10869690 1359457..1360773 1 NC_015703.1 PFAM: Beta-lactamase; COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR014189:IPR013154:IPR013149; KEGG: ote:Oter_0170 PIG3 family NAD(P)H quinone oxidoreductase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SPTR: NAD(P)H quinone oxidoreductase, PIG3 family; TIGRFAM: Quinone oxidoreductase , PIG3; beta-lactamase 1360773 10869690 Runsl_1171 Runella slithyformis DSM 19594 beta-lactamase YP_004654732.1 1359457 D 761193 CDS YP_004654733.1 338210684 10869691 complement(1360776..1361747) 1 NC_015703.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; COGs: COG3347 conserved hypothetical protein; InterPro IPR013454:IPR001303:IPR002198; KEGG: fjo:Fjoh_4215 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; Class II aldolase/adducin, N-terminal; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; TIGRFAM: Bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; NAD(P)H quinone oxidoreductase 1361747 10869691 Runsl_1172 Runella slithyformis DSM 19594 NAD(P)H quinone oxidoreductase YP_004654733.1 1360776 R 761193 CDS YP_004654734.1 338210685 10869692 1361899..1364031 1 NC_015703.1 PFAM: Class II Aldolase and Adducin N-terminal domain; short chain dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; COGs: COG4952 sugar isomerase; InterPro IPR012307; KEGG: fjo:Fjoh_4214 xylose isomerase domain-containing protein; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; rhamnulose-1-phosphate aldolase/alcohol dehydrogenase 1364031 10869692 Runsl_1173 Runella slithyformis DSM 19594 rhamnulose-1-phosphate aldolase/alcohol dehydrogenase YP_004654734.1 1361899 D 761193 CDS YP_004654735.1 338210686 10869693 1364141..1365415 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484; KEGG: shg:Sph21_0514 carbohydrate kinase, FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; SPTR: Carbohydrate kinase, FGGY; xylose isomerase domain-containing protein 1365415 10869693 Runsl_1174 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004654735.1 1364141 D 761193 CDS YP_004654736.1 338210687 10869694 1365417..1366817 1 NC_015703.1 PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; carbohydrate kinase 1366817 10869694 Runsl_1175 Runella slithyformis DSM 19594 carbohydrate kinase YP_004654736.1 1365417 D 761193 CDS YP_004654737.1 338210688 10869696 complement(1367219..1368616) 1 NC_015703.1 PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain; InterPro IPR011444; KEGG: sli:Slin_5453 hypothetical protein; PFAM: Protein of unknown function DUF1549; SPTR: uncharacterized protein; RNA-metabolising metallo-beta-lactamase 1368616 10869696 Runsl_1176 Runella slithyformis DSM 19594 RNA-metabolising metallo-beta-lactamase YP_004654737.1 1367219 R 761193 CDS YP_004654738.1 338210689 10869697 complement(1368941..1371724) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Carbohydrate binding module (family 6); Protein of unknown function (DUF1553); COGs: COG2267 Lysophospholipase; InterPro IPR000073; KEGG: afu:AF1753 lysophospholipase; PFAM: Alpha/beta hydrolase fold-1; SPTR: Lysophospholipase; hypothetical protein 1371724 10869697 Runsl_1177 Runella slithyformis DSM 19594 hypothetical protein YP_004654738.1 1368941 R 761193 CDS YP_004654739.1 338210690 10869698 1371843..1372670 1 NC_015703.1 PFAM: lysophospholipase; KEGG: dfe:Dfer_3974 hypothetical protein; SPTR: uncharacterized protein; alpha/beta hydrolase 1372670 10869698 Runsl_1178 Runella slithyformis DSM 19594 alpha/beta hydrolase YP_004654739.1 1371843 D 761193 CDS YP_004654740.1 338210691 10869699 complement(1372737..1373069) 1 NC_015703.1 COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692; KEGG: lby:Lbys_3063 peptidase S45 penicillin amidase; PFAM: Peptidase S45, penicillin amidase; SPTR: Peptidase S45 penicillin amidase; hypothetical protein 1373069 10869699 Runsl_1179 Runella slithyformis DSM 19594 hypothetical protein YP_004654740.1 1372737 R 761193 CDS YP_004654741.1 338210692 10869700 complement(1373245..1375695) 1 NC_015703.1 PFAM: Penicillin amidase; peptidase S45 penicillin amidase 1375695 10869700 Runsl_1180 Runella slithyformis DSM 19594 peptidase S45 penicillin amidase YP_004654741.1 1373245 R 761193 CDS YP_004654742.1 338210693 10869701 1375839..1376003 1 NC_015703.1 COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545:IPR001650:IPR014001; KEGG: dfe:Dfer_0542 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein; hypothetical protein 1376003 10869701 Runsl_1181 Runella slithyformis DSM 19594 hypothetical protein YP_004654742.1 1375839 D 761193 CDS YP_004654743.1 338210694 10869702 complement(1375932..1377179) 1 NC_015703.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; InterPro IPR002686; KEGG: chu:CHU_0236 transposase; PFAM: Transposase IS200-like; SPTR: Transposase; DEAD/DEAH box helicase 1377179 10869702 Runsl_1182 Runella slithyformis DSM 19594 DEAD/DEAH box helicase YP_004654743.1 1375932 R 761193 CDS YP_004654744.1 338210695 10869703 complement(1377264..1377725) 1 NC_015703.1 PFAM: Transposase IS200 like; transposase IS200 family protein 1377725 10869703 Runsl_1183 Runella slithyformis DSM 19594 transposase IS200 family protein YP_004654744.1 1377264 R 761193 CDS YP_004654745.1 338210696 10869704 complement(1377913..1378416) 1 NC_015703.1 InterPro IPR013428:IPR013427:IPR003088; KEGG: dfe:Dfer_0279 membrane-bound dehydrogenase domain protein; PFAM: Cytochrome c, class I; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; haem-binding region; hypothetical protein 1378416 10869704 Runsl_1184 Runella slithyformis DSM 19594 hypothetical protein YP_004654745.1 1377913 R 761193 CDS YP_004654746.1 338210697 10869705 complement(1378432..1382262) 1 NC_015703.1 PFAM: Cytochrome c; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type; KEGG: dfe:Dfer_4881 hypothetical protein; SPTR: uncharacterized protein; membrane-bound dehydrogenase domain-containing protein 1382262 10869705 Runsl_1185 Runella slithyformis DSM 19594 membrane-bound dehydrogenase domain-containing protein YP_004654746.1 1378432 R 761193 CDS YP_004654747.1 338210698 10869706 complement(1382601..1383671) 1 NC_015703.1 KEGG: sli:Slin_6049 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1383671 10869706 Runsl_1186 Runella slithyformis DSM 19594 hypothetical protein YP_004654747.1 1382601 R 761193 CDS YP_004654748.1 338210699 10869707 1383816..1384547 1 NC_015703.1 hypothetical protein 1384547 10869707 Runsl_1187 Runella slithyformis DSM 19594 hypothetical protein YP_004654748.1 1383816 D 761193 CDS YP_004654749.1 338210700 10869708 complement(1384631..1386682) 1 NC_015703.1 COGs: COG1879 ABC-type sugar transport system periplasmic component; InterProIPR003661:IPR003594:IPR001789:IPR000005:IPR 018060; KEGG: sli:Slin_3199 AraC family transcriptional regulator; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; Helix-turn-helix, AraC type; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; Helix-turn-helix, AraC domain; SPTR: Two component transcriptional regulator, AraC family; hypothetical protein 1386682 10869708 Runsl_1188 Runella slithyformis DSM 19594 hypothetical protein YP_004654749.1 1384631 R 761193 CDS YP_004654750.1 338210701 10869709 1386963..1389683 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR003663:IPR005828; KEGG: sli:Slin_3184 sugar transporter; PFAM: General substrate transporter; SPTR: Sugar transporter; TIGRFAM: Sugar/inositol transporter; AraC family transcriptional regulator 1389683 10869709 Runsl_1189 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004654750.1 1386963 D 761193 CDS YP_004654751.1 338210702 10869710 1390053..1391378 1 NC_015703.1 PFAM: Sugar (and other) transporter; TIGRFAM: MFS transporter, sugar porter (SP) family; COGs: COG0524 Sugar kinase ribokinase; InterPro IPR011611; KEGG: sli:Slin_3183 PfkB domain protein; PFAM: Carbohydrate/purine kinase; PRIAM: Fructokinase; SPTR: PfkB domain protein; sugar transporter 1391378 10869710 Runsl_1190 Runella slithyformis DSM 19594 sugar transporter YP_004654751.1 1390053 D 761193 CDS YP_004654752.1 338210703 10869711 1391400..1392293 1 NC_015703.1 PFAM: pfkB family carbohydrate kinase; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1601 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; fructokinase 1392293 10869711 Runsl_1191 Runella slithyformis DSM 19594 fructokinase YP_004654752.1 1391400 D 761193 CDS YP_004654753.1 338210704 10869712 1392299..1395466 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_1602 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 1395466 10869712 Runsl_1192 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004654753.1 1392299 D 761193 CDS YP_004654754.1 338210705 10869713 1395488..1397194 1 NC_015703.1 PFAM: SusD family; COGs: COG1621 Beta-fructosidase (levanase/invertase); InterPro IPR013148:IPR013189:IPR001362; KEGG: bss:BSUW23_13050 levanase; PFAM: Glycosyl hydrolases family 32, N-terminal; Glycosyl hydrolase 32, C-terminal; SMART: Glycoside hydrolase, family 32; SPTR: Levanase; RagB/SusD domain-containing protein 1397194 10869713 Runsl_1193 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004654754.1 1395488 D 761193 CDS YP_004654755.1 338210706 10869714 1397304..1398809 1 NC_015703.1 PFAM: Glycosyl hydrolases family 32 C terminal; Glycosyl hydrolases family 32 N-terminal domain; KEGG: sli:Slin_2024 hypothetical protein; SPTR: uncharacterized protein; glycosyl hydrolase 32 domain-containing protein 1398809 10869714 Runsl_1194 Runella slithyformis DSM 19594 glycosyl hydrolase 32 domain-containing protein YP_004654755.1 1397304 D 761193 CDS YP_004654756.1 338210707 10869715 complement(1398889..1399677) 1 NC_015703.1 COGs: COG3836 2 4-dihydroxyhept-2-ene-1 7-dioic acid aldolase; InterPro IPR005000; KEGG: sli:Slin_1071 4-hydroxy-2-oxovalerate aldolase; PFAM: HpcH/HpaI aldolase; PRIAM: 4-hydroxy-2-oxovalerate aldolase; SPTR: 4-hydroxy-2-oxovalerate aldolase; hypothetical protein 1399677 10869715 Runsl_1195 Runella slithyformis DSM 19594 hypothetical protein YP_004654756.1 1398889 R 761193 CDS YP_004654757.1 338210708 10869716 1400251..1401024 1 NC_015703.1 PFAM: HpcH/HpaI aldolase/citrate lyase; COGs: COG2610 H+/gluconate symporter and related permease; InterPro IPR003474; KEGG: sli:Slin_1070 gluconate transporter; PFAM: Gluconate transporter; SPTR: Gluconate transporter; 4-hydroxy-2-oxovalerate aldolase 1401024 10869716 Runsl_1196 Runella slithyformis DSM 19594 4-hydroxy-2-oxovalerate aldolase YP_004654757.1 1400251 D 761193 CDS YP_004654758.1 338210709 10869717 1401074..1402522 1 NC_015703.1 PFAM: GntP family permease; COGs: COG2721 Altronate dehydratase; InterPro IPR017654:IPR013974:IPR007392; KEGG: rso:RSp0830 D-galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase, C-terminal; SAF domain; PRIAM: Galactarate dehydratase; SPTR: (D)-galactarate dehydrogenase; TIGRFAM: Galactarate dehydratase; gluconate transporter 1402522 10869717 Runsl_1197 Runella slithyformis DSM 19594 gluconate transporter YP_004654758.1 1401074 D 761193 CDS YP_004654759.1 338210710 10869718 1402587..1404140 1 NC_015703.1 PFAM: D-galactarate dehydratase / Altronate hydrolase, C terminus; SAF domain; TIGRFAM: galactarate dehydratase; COGs: COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase; InterPro IPR006398:IPR006115; KEGG: dfe:Dfer_1409 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; PRIAM: 2-hydroxy-3-oxopropionate reductase; SPTR: 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; galactarate dehydratase 1404140 10869718 Runsl_1198 Runella slithyformis DSM 19594 galactarate dehydratase YP_004654759.1 1402587 D 761193 CDS YP_004654760.1 338210711 10869719 1404283..1405143 1 NC_015703.1 PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; COGs: COG1312 D-mannonate dehydratase; InterPro IPR004628; KEGG: sli:Slin_1069 mannonate dehydratase; PFAM: Mannonate dehydratase; SPTR: Mannonate dehydratase; 2-hydroxy-3-oxopropionate reductase 1405143 10869719 Runsl_1199 Runella slithyformis DSM 19594 2-hydroxy-3-oxopropionate reductase YP_004654760.1 1404283 D 761193 CDS YP_004654761.1 338210712 10869720 1405200..1406315 1 NC_015703.1 PFAM: D-mannonate dehydratase (UxuA); mannonate dehydratase 1406315 10869720 Runsl_1200 Runella slithyformis DSM 19594 mannonate dehydratase YP_004654761.1 1405200 D 761193 CDS YP_004654762.1 338210713 10869721 complement(1406247..1406513) 1 NC_015703.1 COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341:IPR013342; KEGG: sli:Slin_1068 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; PRIAM: Glucarate dehydratase; SPTR: Mandelate racemase/muconate lactonizing protein; hypothetical protein 1406513 10869721 Runsl_1201 Runella slithyformis DSM 19594 hypothetical protein YP_004654762.1 1406247 R 761193 CDS YP_004654763.1 338210714 10869722 1406521..1407825 1 NC_015703.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; KEGG: sli:Slin_2253 hypothetical protein; SPTR: uncharacterized protein; glucarate dehydratase 1407825 10869722 Runsl_1202 Runella slithyformis DSM 19594 glucarate dehydratase YP_004654763.1 1406521 D 761193 CDS YP_004654764.1 338210715 10869723 1407907..1408188 1 NC_015703.1 InterPro IPR001387; KEGG: fjo:Fjoh_2803 bacteriophage CI repressor; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Bacteriophage CI repressor; hypothetical protein 1408188 10869723 Runsl_1203 Runella slithyformis DSM 19594 hypothetical protein YP_004654764.1 1407907 D 761193 CDS YP_004654765.1 338210716 10869724 complement(1408306..1408722) 1 NC_015703.1 PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein 1408722 10869724 Runsl_1204 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004654765.1 1408306 R 761193 CDS YP_004654766.1 338210717 10869725 complement(1408858..1409247) 1 NC_015703.1 hypothetical protein 1409247 10869725 Runsl_1205 Runella slithyformis DSM 19594 hypothetical protein YP_004654766.1 1408858 R 761193 CDS YP_004654767.1 338210718 10869726 1409546..1409818 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 1409818 10869726 Runsl_1206 Runella slithyformis DSM 19594 hypothetical protein YP_004654767.1 1409546 D 761193 CDS YP_004654768.1 338210719 10869728 complement(1410122..1410454) 1 NC_015703.1 hypothetical protein 1410454 10869728 Runsl_1208 Runella slithyformis DSM 19594 hypothetical protein YP_004654768.1 1410122 R 761193 CDS YP_004654769.1 338210720 10869729 1410567..1410971 1 NC_015703.1 hypothetical protein 1410971 10869729 Runsl_1209 Runella slithyformis DSM 19594 hypothetical protein YP_004654769.1 1410567 D 761193 CDS YP_004654770.1 338210721 10869730 1410987..1411211 1 NC_015703.1 hypothetical protein 1411211 10869730 Runsl_1210 Runella slithyformis DSM 19594 hypothetical protein YP_004654770.1 1410987 D 761193 CDS YP_004654771.1 338210722 10869731 1411208..1411327 1 NC_015703.1 hypothetical protein 1411327 10869731 Runsl_1211 Runella slithyformis DSM 19594 hypothetical protein YP_004654771.1 1411208 D 761193 CDS YP_004654772.1 338210723 10869732 1411321..1411590 1 NC_015703.1 hypothetical protein 1411590 10869732 Runsl_1212 Runella slithyformis DSM 19594 hypothetical protein YP_004654772.1 1411321 D 761193 CDS YP_004654773.1 338210724 10869733 1411556..1411753 1 NC_015703.1 hypothetical protein 1411753 10869733 Runsl_1213 Runella slithyformis DSM 19594 hypothetical protein YP_004654773.1 1411556 D 761193 CDS YP_004654774.1 338210725 10869734 1411750..1411974 1 NC_015703.1 hypothetical protein 1411974 10869734 Runsl_1214 Runella slithyformis DSM 19594 hypothetical protein YP_004654774.1 1411750 D 761193 CDS YP_004654775.1 338210726 10869735 1411961..1412239 1 NC_015703.1 KEGG: rbi:RB2501_01435 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1412239 10869735 Runsl_1215 Runella slithyformis DSM 19594 hypothetical protein YP_004654775.1 1411961 D 761193 CDS YP_004654776.1 338210727 10869736 1412266..1412907 1 NC_015703.1 hypothetical protein 1412907 10869736 Runsl_1216 Runella slithyformis DSM 19594 hypothetical protein YP_004654776.1 1412266 D 761193 CDS YP_004654777.1 338210728 10869737 1413016..1413294 1 NC_015703.1 KEGG: reu:Reut_D6518 phage DNA methylase; SPTR: dna-methyltransferase; hypothetical protein 1413294 10869737 Runsl_1217 Runella slithyformis DSM 19594 hypothetical protein YP_004654777.1 1413016 D 761193 CDS YP_004654778.1 338210729 10869738 1413538..1414341 1 NC_015703.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; phage DNA methylase 1414341 10869738 Runsl_1218 Runella slithyformis DSM 19594 phage DNA methylase YP_004654778.1 1413538 D 761193 CDS YP_004654779.1 338210730 10869739 1414560..1415972 1 NC_015703.1 hypothetical protein 1415972 10869739 Runsl_1219 Runella slithyformis DSM 19594 hypothetical protein YP_004654779.1 1414560 D 761193 CDS YP_004654780.1 338210731 10869740 1415976..1416233 1 NC_015703.1 KEGG: psn:Pedsa_0894 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1416233 10869740 Runsl_1220 Runella slithyformis DSM 19594 hypothetical protein YP_004654780.1 1415976 D 761193 CDS YP_004654781.1 338210732 10869741 1416245..1416631 1 NC_015703.1 COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: mea:Mex_2p0039 hypothetical protein; PFAM: DNA methylase, C-5 cytosine-specific; SPTR: Site-specific DNA methylase-like protein; hypothetical protein 1416631 10869741 Runsl_1221 Runella slithyformis DSM 19594 hypothetical protein YP_004654781.1 1416245 D 761193 CDS YP_004654782.1 338210733 10869742 1416628..1417440 1 NC_015703.1 PFAM: C-5 cytosine-specific DNA methylase; C-5 cytosine-specific DNA methylase 1417440 10869742 Runsl_1222 Runella slithyformis DSM 19594 C-5 cytosine-specific DNA methylase YP_004654782.1 1416628 D 761193 CDS YP_004654783.1 338210734 10869743 1417530..1417760 1 NC_015703.1 hypothetical protein 1417760 10869743 Runsl_1223 Runella slithyformis DSM 19594 hypothetical protein YP_004654783.1 1417530 D 761193 CDS YP_004654784.1 338210735 10869744 1417765..1418214 1 NC_015703.1 hypothetical protein 1418214 10869744 Runsl_1224 Runella slithyformis DSM 19594 hypothetical protein YP_004654784.1 1417765 D 761193 CDS YP_004654785.1 338210736 10869745 1418233..1418394 1 NC_015703.1 hypothetical protein 1418394 10869745 Runsl_1225 Runella slithyformis DSM 19594 hypothetical protein YP_004654785.1 1418233 D 761193 CDS YP_004654786.1 338210737 10869746 1418405..1418641 1 NC_015703.1 hypothetical protein 1418641 10869746 Runsl_1226 Runella slithyformis DSM 19594 hypothetical protein YP_004654786.1 1418405 D 761193 CDS YP_004654787.1 338210738 10869747 1418654..1418809 1 NC_015703.1 KEGG: psn:Pedsa_0863 hypothetical protein; SPTR: uncharacterized protein; manually curated; hypothetical protein 1418809 10869747 Runsl_1227 Runella slithyformis DSM 19594 hypothetical protein YP_004654787.1 1418654 D 761193 CDS YP_004654788.1 338210739 10869748 1418796..1419698 1 NC_015703.1 hypothetical protein 1419698 10869748 Runsl_1228 Runella slithyformis DSM 19594 hypothetical protein YP_004654788.1 1418796 D 761193 CDS YP_004654789.1 338210740 10869749 1419851..1420486 1 NC_015703.1 hypothetical protein 1420486 10869749 Runsl_1229 Runella slithyformis DSM 19594 hypothetical protein YP_004654789.1 1419851 D 761193 CDS YP_004654790.1 338210741 10869750 1420483..1421004 1 NC_015703.1 hypothetical protein 1421004 10869750 Runsl_1230 Runella slithyformis DSM 19594 hypothetical protein YP_004654790.1 1420483 D 761193 CDS YP_004654791.1 338210742 10869751 1420979..1421611 1 NC_015703.1 hypothetical protein 1421611 10869751 Runsl_1231 Runella slithyformis DSM 19594 hypothetical protein YP_004654791.1 1420979 D 761193 CDS YP_004654792.1 338210743 10869752 1421624..1422250 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 1422250 10869752 Runsl_1232 Runella slithyformis DSM 19594 hypothetical protein YP_004654792.1 1421624 D 761193 CDS YP_004654793.1 338210744 10869754 1422482..1422652 1 NC_015703.1 KEGG: vcn:VOLCADRAFT_101335 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1422652 10869754 Runsl_1234 Runella slithyformis DSM 19594 hypothetical protein YP_004654793.1 1422482 D 761193 CDS YP_004654794.1 338210745 10869755 1422766..1422912 1 NC_015703.1 hypothetical protein 1422912 10869755 Runsl_1235 Runella slithyformis DSM 19594 hypothetical protein YP_004654794.1 1422766 D 761193 CDS YP_004654795.1 338210746 10869756 1422939..1423346 1 NC_015703.1 hypothetical protein 1423346 10869756 Runsl_1236 Runella slithyformis DSM 19594 hypothetical protein YP_004654795.1 1422939 D 761193 CDS YP_004654796.1 338210747 10869757 1423348..1423962 1 NC_015703.1 hypothetical protein 1423962 10869757 Runsl_1237 Runella slithyformis DSM 19594 hypothetical protein YP_004654796.1 1423348 D 761193 CDS YP_004654797.1 338210748 10869758 1423991..1424353 1 NC_015703.1 hypothetical protein 1424353 10869758 Runsl_1238 Runella slithyformis DSM 19594 hypothetical protein YP_004654797.1 1423991 D 761193 CDS YP_004654798.1 338210749 10869759 1424353..1424700 1 NC_015703.1 hypothetical protein 1424700 10869759 Runsl_1239 Runella slithyformis DSM 19594 hypothetical protein YP_004654798.1 1424353 D 761193 CDS YP_004654799.1 338210750 10869760 1424702..1425010 1 NC_015703.1 hypothetical protein 1425010 10869760 Runsl_1240 Runella slithyformis DSM 19594 hypothetical protein YP_004654799.1 1424702 D 761193 CDS YP_004654800.1 338210751 10869761 1425045..1425671 1 NC_015703.1 hypothetical protein 1425671 10869761 Runsl_1241 Runella slithyformis DSM 19594 hypothetical protein YP_004654800.1 1425045 D 761193 CDS YP_004654801.1 338210752 10869762 1425749..1426465 1 NC_015703.1 hypothetical protein 1426465 10869762 Runsl_1242 Runella slithyformis DSM 19594 hypothetical protein YP_004654801.1 1425749 D 761193 CDS YP_004654802.1 338210753 10869763 1426440..1426985 1 NC_015703.1 InterPro IPR013247; PFAM: SH3, type 3; hypothetical protein 1426985 10869763 Runsl_1243 Runella slithyformis DSM 19594 hypothetical protein YP_004654802.1 1426440 D 761193 CDS YP_004654803.1 338210754 10869764 1426982..1427653 1 NC_015703.1 PFAM: Bacterial SH3 domain; SH3 type 3 domain-containing protein 1427653 10869764 Runsl_1244 Runella slithyformis DSM 19594 SH3 type 3 domain-containing protein YP_004654803.1 1426982 D 761193 CDS YP_004654804.1 338210755 10869765 1427650..1428075 1 NC_015703.1 hypothetical protein 1428075 10869765 Runsl_1245 Runella slithyformis DSM 19594 hypothetical protein YP_004654804.1 1427650 D 761193 CDS YP_004654805.1 338210756 10869766 1428077..1428259 1 NC_015703.1 KEGG: sli:Slin_0588 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1428259 10869766 Runsl_1246 Runella slithyformis DSM 19594 hypothetical protein YP_004654805.1 1428077 D 761193 CDS YP_004654806.1 338210757 10869767 1428316..1428840 1 NC_015703.1 PFAM: Protein of unknown function (DUF3380); hypothetical protein 1428840 10869767 Runsl_1247 Runella slithyformis DSM 19594 hypothetical protein YP_004654806.1 1428316 D 761193 CDS YP_004654807.1 338210758 10869768 1428971..1429078 1 NC_015703.1 hypothetical protein 1429078 10869768 Runsl_1248 Runella slithyformis DSM 19594 hypothetical protein YP_004654807.1 1428971 D 761193 CDS YP_004654808.1 338210759 10869769 1429078..1431291 1 NC_015703.1 hypothetical protein 1431291 10869769 Runsl_1249 Runella slithyformis DSM 19594 hypothetical protein YP_004654808.1 1429078 D 761193 CDS YP_004654809.1 338210760 10869770 1431301..1431549 1 NC_015703.1 SPTR: uncharacterized protein; hypothetical protein 1431549 10869770 Runsl_1250 Runella slithyformis DSM 19594 hypothetical protein YP_004654809.1 1431301 D 761193 CDS YP_004654810.1 338210761 10869771 1431570..1433321 1 NC_015703.1 hypothetical protein 1433321 10869771 Runsl_1251 Runella slithyformis DSM 19594 hypothetical protein YP_004654810.1 1431570 D 761193 CDS YP_004654811.1 338210762 10869772 1433335..1433832 1 NC_015703.1 hypothetical protein 1433832 10869772 Runsl_1252 Runella slithyformis DSM 19594 hypothetical protein YP_004654811.1 1433335 D 761193 CDS YP_004654812.1 338210763 10869773 1433974..1434324 1 NC_015703.1 hypothetical protein 1434324 10869773 Runsl_1253 Runella slithyformis DSM 19594 hypothetical protein YP_004654812.1 1433974 D 761193 CDS YP_004654813.1 338210764 10869774 1434354..1435364 1 NC_015703.1 KEGG: sli:Slin_0677 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1435364 10869774 Runsl_1254 Runella slithyformis DSM 19594 hypothetical protein YP_004654813.1 1434354 D 761193 CDS YP_004654814.1 338210765 10869775 1435364..1436668 1 NC_015703.1 hypothetical protein 1436668 10869775 Runsl_1255 Runella slithyformis DSM 19594 hypothetical protein YP_004654814.1 1435364 D 761193 CDS YP_004654815.1 338210766 10869776 1436665..1437144 1 NC_015703.1 hypothetical protein 1437144 10869776 Runsl_1256 Runella slithyformis DSM 19594 hypothetical protein YP_004654815.1 1436665 D 761193 CDS YP_004654816.1 338210767 10869777 1437296..1437469 1 NC_015703.1 hypothetical protein 1437469 10869777 Runsl_1257 Runella slithyformis DSM 19594 hypothetical protein YP_004654816.1 1437296 D 761193 CDS YP_004654817.1 338210768 10869778 1437466..1437741 1 NC_015703.1 manually curated; hypothetical protein 1437741 10869778 Runsl_1258 Runella slithyformis DSM 19594 hypothetical protein YP_004654817.1 1437466 D 761193 CDS YP_004654818.1 338210769 10869779 1437886..1438095 1 NC_015703.1 hypothetical protein 1438095 10869779 Runsl_1259 Runella slithyformis DSM 19594 hypothetical protein YP_004654818.1 1437886 D 761193 CDS YP_004654819.1 338210770 10869780 1438229..1438756 1 NC_015703.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: rbi:RB2501_10362 tyrosine type site-specific recombinase; PFAM: Integrase, catalytic core, phage; SPTR: Tyrosine type site-specific recombinase; hypothetical protein 1438756 10869780 Runsl_1260 Runella slithyformis DSM 19594 hypothetical protein YP_004654819.1 1438229 D 761193 CDS YP_004654820.1 338210771 10869781 complement(1438772..1439983) 1 NC_015703.1 PFAM: Phage integrase; integrase 1439983 10869781 Runsl_1261 Runella slithyformis DSM 19594 integrase YP_004654820.1 1438772 R 761193 CDS YP_004654821.1 338210772 10869783 1440473..1441408 1 NC_015703.1 PFAM: pfkB family carbohydrate kinase; fructokinase 1441408 10869783 Runsl_1262 Runella slithyformis DSM 19594 fructokinase YP_004654821.1 1440473 D 761193 CDS YP_004654822.1 338210773 10869784 complement(1441318..1441491) 1 NC_015703.1 KEGG: fbc:FB2170_02555 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1441491 10869784 Runsl_1263 Runella slithyformis DSM 19594 hypothetical protein YP_004654822.1 1441318 R 761193 CDS YP_004654823.1 338210774 10869785 complement(1441603..1442178) 1 NC_015703.1 KEGG: fbc:FB2170_02550 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1442178 10869785 Runsl_1264 Runella slithyformis DSM 19594 hypothetical protein YP_004654823.1 1441603 R 761193 CDS YP_004654824.1 338210775 10869786 complement(1442215..1443864) 1 NC_015703.1 InterPro IPR012910:IPR000531; KEGG: zpr:ZPR_3678 outer hypothetical protein probably involved in nutrient binding; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: outer membrane protein, probably involved in nutrient binding; hypothetical protein 1443864 10869786 Runsl_1265 Runella slithyformis DSM 19594 hypothetical protein YP_004654824.1 1442215 R 761193 CDS YP_004654825.1 338210776 10869787 complement(1443930..1447121) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: sli:Slin_4239 patatin; PFAM: Patatin; SPTR: Patatin; TonB-dependent receptor plug 1447121 10869787 Runsl_1266 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004654825.1 1443930 R 761193 CDS YP_004654826.1 338210777 10869788 complement(1447685..1448509) 1 NC_015703.1 PFAM: Patatin-like phospholipase; COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR005730:IPR000183; KEGG: dfe:Dfer_1153 carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Carboxynorspermidine decarboxylase; TIGRFAM: Carboxynorspermidine decarboxylase; patatin 1448509 10869788 Runsl_1267 Runella slithyformis DSM 19594 patatin YP_004654826.1 1447685 R 761193 CDS YP_004654827.1 338210778 10869789 1448564..1449766 1 NC_015703.1 PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; TIGRFAM: carboxynorspermidine decarboxylase; COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: sli:Slin_5437 BadM/Rrf2 family transcriptional regulator; PFAM: Transcriptional regulator, Rrf2; SPTR: Transcriptional regulator, BadM/Rrf2 family; TIGRFAM: Transcriptional regulator, Rrf2; carboxynorspermidine decarboxylase 1449766 10869789 Runsl_1268 Runella slithyformis DSM 19594 carboxynorspermidine decarboxylase YP_004654827.1 1448564 D 761193 CDS YP_004654828.1 338210779 10869790 1449893..1450303 1 NC_015703.1 PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein; COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR004602:IPR003439; KEGG: dfe:Dfer_3862 excinuclease ABC, A subunit; PFAM: ABC transporter-like; SPTR: Excinuclease ABC, A subunit; TIGRFAM: Excinuclease ABC, A subunit; BadM/Rrf2 family transcriptional regulator 1450303 10869790 Runsl_1269 Runella slithyformis DSM 19594 BadM/Rrf2 family transcriptional regulator YP_004654828.1 1449893 D 761193 CDS YP_004654829.1 338210780 10869791 complement(1450307..1453168) 1 NC_015703.1 PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: pdi:BDI_2050 NADH-dependent dyhydrogenase; PFAM: Oxidoreductase, N-terminal; SPTR: NADH-dependent dyhydrogenase; excinuclease ABC subunit A 1453168 10869791 Runsl_1270 Runella slithyformis DSM 19594 excinuclease ABC subunit A YP_004654829.1 1450307 R 761193 CDS YP_004654830.1 338210781 10869792 1453456..1454775 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; InterPro IPR006311:IPR001258; KEGG: dfe:Dfer_4570 NHL repeat containing protein; PFAM: NHL repeat; SPTR: NHL repeat containing protein; oxidoreductase domain-containing protein 1454775 10869792 Runsl_1271 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004654830.1 1453456 D 761193 CDS YP_004654831.1 338210782 10869793 1454871..1455932 1 NC_015703.1 NHL repeat containing protein 1455932 10869793 Runsl_1272 Runella slithyformis DSM 19594 NHL repeat containing protein YP_004654831.1 1454871 D 761193 CDS YP_004654832.1 338210783 10869794 1456152..1456904 1 NC_015703.1 COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR013751:IPR013747; KEGG: bbe:BBR47_46770 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase III; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase III; hypothetical protein 1456904 10869794 Runsl_1273 Runella slithyformis DSM 19594 hypothetical protein YP_004654832.1 1456152 D 761193 CDS YP_004654833.1 338210784 10869795 complement(1456905..1457885) 1 NC_015703.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR012685; KEGG: bbe:BBR47_46730 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein, F390 synthetase-related; 3-ketoacyl-ACP synthase III 1457885 10869795 Runsl_1274 Runella slithyformis DSM 19594 3-ketoacyl-ACP synthase III YP_004654833.1 1456905 R 761193 CDS YP_004654834.1 338210785 10869796 complement(1457882..1459180) 1 NC_015703.1 TIGRFAM: adenylate-forming enzyme; KEGG: bal:BACI_c31830 metallo-beta-lactamase superfamily protein; SPTR: Zn-dependent hydrolase GumP; adenylate-forming enzyme 1459180 10869796 Runsl_1275 Runella slithyformis DSM 19594 adenylate-forming enzyme YP_004654834.1 1457882 R 761193 CDS YP_004654835.1 338210786 10869797 complement(1459232..1460083) 1 NC_015703.1 PFAM: Metallo-beta-lactamase superfamily; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: pfo:Pfl01_4482 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: Sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating); SPTR: 3-beta hydroxysteroid dehydrogenase/isomerase; metallo-beta-lactamase superfamily protein 1460083 10869797 Runsl_1276 Runella slithyformis DSM 19594 metallo-beta-lactamase superfamily protein YP_004654835.1 1459232 R 761193 CDS YP_004654836.1 338210787 10869798 complement(1460059..1461057) 1 NC_015703.1 PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; Sterol-4-alpha-carboxylate 3-dehydrogenase 1461057 10869798 Runsl_1277 Runella slithyformis DSM 19594 Sterol-4-alpha-carboxylate 3-dehydrogenase YP_004654836.1 1460059 R 761193 CDS YP_004654837.1 338210788 10869799 complement(1461066..1462994) 1 NC_015703.1 KEGG: mar:MAE_61060 hyalin repeat-containing protein; SPTR: uncharacterized protein; hypothetical protein 1462994 10869799 Runsl_1278 Runella slithyformis DSM 19594 hypothetical protein YP_004654837.1 1461066 R 761193 CDS YP_004654838.1 338210789 10869800 complement(1463037..1465412) 1 NC_015703.1 COGs: COG2819 hydrolase of the alpha/beta superfamily; InterPro IPR000801; KEGG: dfe:Dfer_4810 esterase; PFAM: esterase; SPTR: esterase; hypothetical protein 1465412 10869800 Runsl_1279 Runella slithyformis DSM 19594 hypothetical protein YP_004654838.1 1463037 R 761193 CDS YP_004654839.1 338210790 10869801 complement(1465524..1466621) 1 NC_015703.1 PFAM: esterase; esterase 1466621 10869801 Runsl_1280 Runella slithyformis DSM 19594 esterase YP_004654839.1 1465524 R 761193 CDS YP_004654840.1 338210791 10869802 complement(1466709..1467101) 1 NC_015703.1 InterPro IPR002931; KEGG: mtt:Ftrac_0150 transglutaminase domain-containing protein; PFAM: Transglutaminase-like; SPTR: Transglutaminase domain-containing protein; hypothetical protein 1467101 10869802 Runsl_1281 Runella slithyformis DSM 19594 hypothetical protein YP_004654840.1 1466709 R 761193 CDS YP_004654841.1 338210792 10869803 1467266..1469209 1 NC_015703.1 PFAM: Transglutaminase-like superfamily; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR013704:IPR006638; KEGG: sli:Slin_1403 radical SAM protein; PFAM: Radical SAM N-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: UPF0313 protein Slin_1403; transglutaminase domain-containing protein 1469209 10869803 Runsl_1282 Runella slithyformis DSM 19594 transglutaminase domain-containing protein YP_004654841.1 1467266 D 761193 CDS YP_004654842.1 338210793 10869804 complement(1469261..1471141) 1 NC_015703.1 PFAM: Radical SAM superfamily; Radical SAM N-terminal; TIGRFAM: uncharacterized radical SAM protein YgiQ; COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545:IPR001650:IPR005580:IPR014001; KEGG: sli:Slin_0250 DEAD/DEAH box helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein; radical SAM protein 1471141 10869804 Runsl_1283 Runella slithyformis DSM 19594 radical SAM protein YP_004654842.1 1469261 R 761193 CDS YP_004654843.1 338210794 10869805 complement(1471347..1473059) 1 NC_015703.1 PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase; COGs: COG2884 ATPase involved in cell division; InterPro IPR003439:IPR003593; KEGG: sli:Slin_3028 ABC transporter; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; DEAD/DEAH box helicase 1473059 10869805 Runsl_1284 Runella slithyformis DSM 19594 DEAD/DEAH box helicase YP_004654843.1 1471347 R 761193 CDS YP_004654844.1 338210795 10869806 complement(1473466..1474149) 1 NC_015703.1 PFAM: ABC transporter; COGs: COG0176 Transaldolase; HAMAP: transaldolase; InterPro IPR004731:IPR001585; KEGG: dfe:Dfer_5045 translaldolase; PFAM: Transaldolase; SPTR: Probable transaldolase; TIGRFAM: Transaldolase C; phosphonate-transporting ATPase 1474149 10869806 Runsl_1285 Runella slithyformis DSM 19594 phosphonate-transporting ATPase YP_004654844.1 1473466 R 761193 CDS YP_004654845.1 338210796 10869807 complement(1474245..1474901) 1 NC_015703.1 PFAM: Transaldolase; TIGRFAM: fructose-6-phosphate aldolase, TalC/MipB family; InterPro IPR012910:IPR000531; KEGG: mtt:Ftrac_0132 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; transaldolase 1474901 10869807 Runsl_1286 Runella slithyformis DSM 19594 transaldolase YP_004654845.1 1474245 R 761193 CDS YP_004654846.1 338210797 10869808 1475207..1478212 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: zpr:ZPR_2448 SusD/RagB family protein; PFAM: RagB/SusD; SPTR: SusD/RagB family protein; TonB-dependent receptor plug 1478212 10869808 Runsl_1287 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004654846.1 1475207 D 761193 CDS YP_004654847.1 338210798 10869809 1478231..1479739 1 NC_015703.1 PFAM: SusD family; RagB/SusD domain-containing protein 1479739 10869809 Runsl_1288 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004654847.1 1478231 D 761193 CDS YP_004654848.1 338210799 10869810 1479828..1480421 1 NC_015703.1 InterPro IPR013519; KEGG: mtt:Ftrac_0135 fg-gap repeat protein; SPTR: FG-GAP repeat protein; hypothetical protein 1480421 10869810 Runsl_1289 Runella slithyformis DSM 19594 hypothetical protein YP_004654848.1 1479828 D 761193 CDS YP_004654849.1 338210800 10869811 1480520..1483843 1 NC_015703.1 PFAM: ASPIC and UnbV; FG-GAP repeat; InterPro IPR013517:IPR011519; KEGG: sli:Slin_5060 ASPIC/UnbV domain protein; PFAM: ASPIC/UnbV; FG-GAP; SPTR: ASPIC/UnbV domain protein; hypothetical protein 1483843 10869811 Runsl_1290 Runella slithyformis DSM 19594 hypothetical protein YP_004654849.1 1480520 D 761193 CDS YP_004654850.1 338210801 10869812 complement(1483953..1487393) 1 NC_015703.1 PFAM: ASPIC and UnbV; FG-GAP repeat; KEGG: sli:Slin_2828 hypothetical protein; SPTR: uncharacterized protein; ASPIC/UnbV domain-containing protein 1487393 10869812 Runsl_1291 Runella slithyformis DSM 19594 ASPIC/UnbV domain-containing protein YP_004654850.1 1483953 R 761193 CDS YP_004654851.1 338210802 10869813 1487512..1488720 1 NC_015703.1 InterPro IPR012910; KEGG: rbi:RB2501_03790 TonB-dependent outer membrane receptor protein; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent outer membrane receptor protein; hypothetical protein 1488720 10869813 Runsl_1292 Runella slithyformis DSM 19594 hypothetical protein YP_004654851.1 1487512 D 761193 CDS YP_004654852.1 338210803 10869814 1488749..1491145 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; KEGG: pfl:PFL_6136 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 1491145 10869814 Runsl_1293 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004654852.1 1488749 D 761193 CDS YP_004654853.1 338210804 10869815 1491294..1492379 1 NC_015703.1 PFAM: ATP-grasp domain; KEGG: llo:LLO_0927 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1492379 10869815 Runsl_1294 Runella slithyformis DSM 19594 hypothetical protein YP_004654853.1 1491294 D 761193 CDS YP_004654854.1 338210805 10869816 1492372..1493499 1 NC_015703.1 COGs: COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenase large terminal subunit; InterPro IPR017941; KEGG: pfl:PFL_6138 Rieske (2Fe-2S) domain-containing protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Rieske 2Fe-2S domain protein; hypothetical protein 1493499 10869816 Runsl_1295 Runella slithyformis DSM 19594 hypothetical protein YP_004654854.1 1492372 D 761193 CDS YP_004654855.1 338210806 10869817 1493489..1494463 1 NC_015703.1 PFAM: Rieske [2Fe-2S] domain; Rieske (2Fe-2S) domain-containing protein 1494463 10869817 Runsl_1296 Runella slithyformis DSM 19594 Rieske (2Fe-2S) domain-containing protein YP_004654855.1 1493489 D 761193 CDS YP_004654856.1 338210807 10869818 1494512..1495510 1 NC_015703.1 COGs: COG0557 Exoribonuclease R; InterProIPR011805:IPR004476:IPR013223:IPR001900:IPR 003029; KEGG: sli:Slin_5873 ribonuclease R; PFAM: Ribonuclease II/R; Ribonuclease B, OB region N-terminal; Ribosomal protein S1, RNA binding domain; PRIAM: Exoribonuclease II; SPTR: Ribonuclease R; TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; hypothetical protein 1495510 10869818 Runsl_1297 Runella slithyformis DSM 19594 hypothetical protein YP_004654856.1 1494512 D 761193 CDS YP_004654857.1 338210808 10869819 complement(1495545..1497905) 1 NC_015703.1 PFAM: RNB domain; Ribonuclease B OB domain; S1 RNA binding domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases; InterPro IPR004675:IPR003779; KEGG: zpr:ZPR_4188 carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; SPTR: Carboxymuconolactone decarboxylase; TIGRFAM: Alkylhydroperoxidase AhpD core; ribonuclease R 1497905 10869819 Runsl_1298 Runella slithyformis DSM 19594 ribonuclease R YP_004654857.1 1495545 R 761193 CDS YP_004654858.1 338210809 10869820 1498224..1498559 1 NC_015703.1 PFAM: Carboxymuconolactone decarboxylase; TIGRFAM: alkylhydroperoxidase AhpD family core domain; COGs: COG0535 Fe-S oxidoreductase; KEGG: gfo:GFO_3602 radical SAM superfamily protein; SPTR: uncharacterized protein; alkylhydroperoxidase 1498559 10869820 Runsl_1299 Runella slithyformis DSM 19594 alkylhydroperoxidase YP_004654858.1 1498224 D 761193 CDS YP_004654859.1 338210810 10869821 1498654..1499718 1 NC_015703.1 PFAM: Radical SAM superfamily; Protein of unknown function (DUF3641); InterPro IPR001387; KEGG: cao:Celal_0834 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix domain protein; radical SAM superfamily protein 1499718 10869821 Runsl_1300 Runella slithyformis DSM 19594 radical SAM superfamily protein YP_004654859.1 1498654 D 761193 CDS YP_004654860.1 338210811 10869822 1499940..1500158 1 NC_015703.1 PFAM: Helix-turn-helix; InterPro IPR017508; KEGG: cao:Celal_0835 HipA N-terminal domain protein; SPTR: Possible HipA-like protein; TIGRFAM: HipA, N-terminal; helix-turn-helix domain-containing protein 1500158 10869822 Runsl_1301 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004654860.1 1499940 D 761193 CDS YP_004654861.1 338210812 10869823 1500155..1500484 1 NC_015703.1 TIGRFAM: HipA N-terminal domain; COGs: COG3550 conserved hypothetical protein; InterPro IPR012894:IPR012893; KEGG: zpr:ZPR_4409 HipA-like protein; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; SPTR: HipA-like protein; HipA N-terminal domain-containing protein 1500484 10869823 Runsl_1302 Runella slithyformis DSM 19594 HipA N-terminal domain-containing protein YP_004654861.1 1500155 D 761193 CDS YP_004654862.1 338210813 10869824 1500481..1501467 1 NC_015703.1 PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain; KEGG: cat:CA2559_04180 hypothetical protein; SPTR: uncharacterized protein; HipA domain-containing protein 1501467 10869824 Runsl_1303 Runella slithyformis DSM 19594 HipA domain-containing protein YP_004654862.1 1500481 D 761193 CDS YP_004654863.1 338210814 10869825 complement(1501791..1502618) 1 NC_015703.1 InterPro IPR001734; KEGG: cat:CA2559_04175 hypothetical protein; PFAM: Sodium/solute symporter; SPTR: uncharacterized protein; hypothetical protein 1502618 10869825 Runsl_1304 Runella slithyformis DSM 19594 hypothetical protein YP_004654863.1 1501791 R 761193 CDS YP_004654864.1 338210815 10869826 complement(1502615..1503958) 1 NC_015703.1 PFAM: Sodium:solute symporter family; KEGG: gfo:GFO_3605 hypothetical protein; SPTR: uncharacterized protein; Na+/solute symporter 1503958 10869826 Runsl_1305 Runella slithyformis DSM 19594 Na+/solute symporter YP_004654864.1 1502615 R 761193 CDS YP_004654865.1 338210816 10869827 complement(1503965..1505407) 1 NC_015703.1 COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: cat:CA2559_04165 outer membrane protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: Outer membrane protein; hypothetical protein 1505407 10869827 Runsl_1306 Runella slithyformis DSM 19594 hypothetical protein YP_004654865.1 1503965 R 761193 CDS YP_004654866.1 338210817 10869828 complement(1505444..1508683) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: fjo:Fjoh_3509 sterol desaturase-like protein; PFAM: Fatty acid hydroxylase; SPTR: Sterol desaturase-like protein; TonB-dependent receptor plug 1508683 10869828 Runsl_1307 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004654866.1 1505444 R 761193 CDS YP_004654867.1 338210818 10869829 1508864..1510147 1 NC_015703.1 PFAM: Fatty acid hydroxylase superfamily; COGs: COG3591 V8-like Glu-specific endopeptidase; KEGG: fre:Franean1_5547 peptidase S1 and S6 chymotrypsin/Hap; SPTR: Peptidase S1 and S6 chymotrypsin/Hap; fatty acid hydroxylase 1510147 10869829 Runsl_1308 Runella slithyformis DSM 19594 fatty acid hydroxylase YP_004654867.1 1508864 D 761193 CDS YP_004654868.1 338210819 10869830 1510256..1511029 1 NC_015703.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_1007 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; hypothetical protein 1511029 10869830 Runsl_1309 Runella slithyformis DSM 19594 hypothetical protein YP_004654868.1 1510256 D 761193 CDS YP_004654869.1 338210820 10869831 1511051..1511755 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG2834 Outer membrane lipoprotein-sorting protein; InterPro IPR004564; KEGG: dfe:Dfer_3188 outer membrane lipoprotein carrier protein LolA; PFAM: Outer membrane lipoprotein carrier protein LolA; SPTR: Outer membrane lipoprotein carrier protein LolA; 3-oxoacyl-ACP reductase 1511755 10869831 Runsl_1310 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004654869.1 1511051 D 761193 CDS YP_004654870.1 338210821 10869832 complement(1511797..1512426) 1 NC_015703.1 PFAM: Outer membrane lipoprotein carrier protein LolA; COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543:IPR018541; KEGG: sli:Slin_5855 cell divisionFtsK/SpoIIIE; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SPTR: Cell divisionFtsK/SpoIIIE; outer membrane lipoprotein carrier protein LolA 1512426 10869832 Runsl_1311 Runella slithyformis DSM 19594 outer membrane lipoprotein carrier protein LolA YP_004654870.1 1511797 R 761193 CDS YP_004654871.1 338210822 10869833 complement(1512603..1515137) 1 NC_015703.1 PFAM: Ftsk gamma domain; FtsK/SpoIIIE family; COGs: COG0167 Dihydroorotate dehydrogenase; HAMAP: Dihydroorotate dehydrogenase; InterPro IPR005719:IPR012135; KEGG: dfe:Dfer_3190 dihydroorotate dehydrogenase 2; PFAM: Dihydroorotate dehydrogenase, class 1/ 2; PRIAM: Dihydroorotate oxidase; SPTR: Dihydroorotate dehydrogenase; TIGRFAM: Dihydroorotate dehydrogenase, class 2; DNA translocase FtsK 1515137 10869833 Runsl_1312 Runella slithyformis DSM 19594 DNA translocase FtsK YP_004654871.1 1512603 R 761193 CDS YP_004654872.1 338210823 10869834 complement(1515305..1516357) 1 NC_015703.1 PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase, subfamily 2; KEGG: dfe:Dfer_3880 hypothetical protein; SPTR: uncharacterized protein; dihydroorotate dehydrogenase 1516357 10869834 Runsl_1313 Runella slithyformis DSM 19594 dihydroorotate dehydrogenase YP_004654872.1 1515305 R 761193 CDS YP_004654873.1 338210824 10869835 complement(1516435..1518207) 1 NC_015703.1 COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: dfe:Dfer_3504 acyltransferase 3; PFAM: Acyltransferase 3; SPTR: Acyltransferase 3; manually curated; hypothetical protein 1518207 10869835 Runsl_1314 Runella slithyformis DSM 19594 hypothetical protein YP_004654873.1 1516435 R 761193 CDS YP_004654874.1 338210825 10869836 1518284..1519441 1 NC_015703.1 PFAM: Acyltransferase; InterPro IPR002509; KEGG: dfe:Dfer_3505 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; acyltransferase 1519441 10869836 Runsl_1315 Runella slithyformis DSM 19594 acyltransferase YP_004654874.1 1518284 D 761193 CDS YP_004654875.1 338210826 10869837 complement(1519427..1520233) 1 NC_015703.1 PFAM: Polysaccharide deacetylase; COGs: COG0035 Uracil phosphoribosyltransferase; KEGG: dfe:Dfer_3881 uracil phosphoribosyltransferase; SPTR: Uracil phosphoribosyltransferase; polysaccharide deacetylase 1520233 10869837 Runsl_1316 Runella slithyformis DSM 19594 polysaccharide deacetylase YP_004654875.1 1519427 R 761193 CDS YP_004654876.1 338210827 10869838 1520299..1521009 1 NC_015703.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: uracil phosphoribosyltransferase; KEGG: dfe:Dfer_3697 barstar (barnase inhibitor); SPTR: Barstar (Barnase inhibitor); uracil phosphoribosyltransferase 1521009 10869838 Runsl_1317 Runella slithyformis DSM 19594 uracil phosphoribosyltransferase YP_004654876.1 1520299 D 761193 CDS YP_004654877.1 338210828 10869839 1521372..1521797 1 NC_015703.1 PFAM: Barstar (barnase inhibitor); COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; HAMAP: Uncharacterised protein family UPF0102; InterPro IPR003509; KEGG: sli:Slin_5877 hypothetical protein; PFAM: Uncharacterised protein family UPF0102; SPTR: UPF0102 protein Slin_5877; barstar (barnase inhibitor) 1521797 10869839 Runsl_1318 Runella slithyformis DSM 19594 barstar (barnase inhibitor) YP_004654877.1 1521372 D 761193 CDS YP_004654878.1 338210829 10869840 complement(1521807..1522160) 1 NC_015703.1 PFAM: Uncharacterised protein family UPF0102; TIGRFAM: TIGR00252 family protein; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR013096:IPR000005:IPR018060; KEGG: dfe:Dfer_4301 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; Cupin 2, conserved barrel; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; hypothetical protein 1522160 10869840 Runsl_1319 Runella slithyformis DSM 19594 hypothetical protein YP_004654878.1 1521807 R 761193 CDS YP_004654879.1 338210830 10869841 complement(1522209..1523084) 1 NC_015703.1 PFAM: Cupin domain; Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; InterPro IPR006935:IPR003593; KEGG: sli:Slin_3380 ATPase AAA; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: ATPase, AAA+ type, core; SPTR: AAA ATPase; AraC family transcriptional regulator 1523084 10869841 Runsl_1320 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004654879.1 1522209 R 761193 CDS YP_004654880.1 338210831 10869842 complement(1523146..1525056) 1 NC_015703.1 PFAM: Type III restriction enzyme, res subunit; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: dfe:Dfer_4299 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; type III restriction protein res subunit 1525056 10869842 Runsl_1321 Runella slithyformis DSM 19594 type III restriction protein res subunit YP_004654880.1 1523146 R 761193 CDS YP_004654881.1 338210832 10869843 1525267..1526106 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: dfe:Dfer_4289 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; xylose isomerase domain-containing protein 1526106 10869843 Runsl_1322 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004654881.1 1525267 D 761193 CDS YP_004654882.1 338210833 10869844 1526190..1527347 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG3828 conserved hypothetical protein; InterPro IPR013428:IPR009381:IPR000923; KEGG: dfe:Dfer_4288 membrane-bound dehydrogenase domain protein; PFAM: Blue (type 1) copper domain; Protein of unknown function DUF1037; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; oxidoreductase domain-containing protein 1527347 10869844 Runsl_1323 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004654882.1 1526190 D 761193 CDS YP_004654883.1 338210834 10869845 1527377..1531150 1 NC_015703.1 PFAM: Trehalose utilisation; Copper binding proteins, plastocyanin/azurin family; CARDB; TIGRFAM: membrane-bound dehydrogenase domain; COGs: COG4299 conserved hypothetical protein; InterPro IPR019259; KEGG: sli:Slin_5410 hypothetical protein; PFAM: Protein of unknown function DUF2261, transmembrane; SPTR: uncharacterized protein; membrane-bound dehydrogenase domain-containing protein 1531150 10869845 Runsl_1324 Runella slithyformis DSM 19594 membrane-bound dehydrogenase domain-containing protein YP_004654883.1 1527377 D 761193 CDS YP_004654884.1 338210835 10869846 complement(1531212..1532303) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1624); COGs: COG1858 Cytochrome c peroxidase; InterPro IPR004852; KEGG: dfe:Dfer_1545 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; PRIAM: Cytochrome-c peroxidase; SPTR: Cytochrome-c peroxidase; hypothetical protein 1532303 10869846 Runsl_1325 Runella slithyformis DSM 19594 hypothetical protein YP_004654884.1 1531212 R 761193 CDS YP_004654885.1 338210836 10869847 complement(1532345..1533529) 1 NC_015703.1 PFAM: Di-haem cytochrome c peroxidase; COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: fbc:FB2170_00745 hypothetical protein; SPTR: WD40 domain protein beta Propeller; cytochrome-c peroxidase 1533529 10869847 Runsl_1326 Runella slithyformis DSM 19594 cytochrome-c peroxidase YP_004654885.1 1532345 R 761193 CDS YP_004654886.1 338210837 10869848 complement(1533589..1534506) 1 NC_015703.1 PFAM: WD40-like Beta Propeller Repeat; COGs: COG0262 Dihydrofolate reductase; InterPro IPR002734; KEGG: cpi:Cpin_6691 bifunctional deaminase-reductase domain protein; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; SPTR: Bifunctional deaminase-reductase domain protein; hypothetical protein 1534506 10869848 Runsl_1327 Runella slithyformis DSM 19594 hypothetical protein YP_004654886.1 1533589 R 761193 CDS YP_004654887.1 338210838 10869849 complement(1534727..1535248) 1 NC_015703.1 PFAM: RibD C-terminal domain; KEGG: fjo:Fjoh_1571 hypothetical protein; SPTR: uncharacterized protein; bifunctional deaminase-reductase domain-containing protein 1535248 10869849 Runsl_1328 Runella slithyformis DSM 19594 bifunctional deaminase-reductase domain-containing protein YP_004654887.1 1534727 R 761193 CDS YP_004654888.1 338210839 10869850 complement(1535264..1535593) 1 NC_015703.1 PFAM: Protein of unknown function (DUF419); InterPro IPR015018; KEGG: sli:Slin_4564 hypothetical protein; PFAM: Protein of unknown function DUF1905; SPTR: uncharacterized protein; hypothetical protein 1535593 10869850 Runsl_1329 Runella slithyformis DSM 19594 hypothetical protein YP_004654888.1 1535264 R 761193 CDS YP_004654889.1 338210840 10869851 complement(1535657..1536166) 1 NC_015703.1 PFAM: Domain of unknown function (DUF1905); InterPro IPR013538; KEGG: lic:LIC10281 hypothetical protein; PFAM: Activator of Hsp90 ATPase homologue 1-like; SPTR: uncharacterized protein; hypothetical protein 1536166 10869851 Runsl_1330 Runella slithyformis DSM 19594 hypothetical protein YP_004654889.1 1535657 R 761193 CDS YP_004654890.1 338210841 10869852 complement(1536252..1536680) 1 NC_015703.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein; COGs: COG3795 conserved hypothetical protein; InterPro IPR005545; KEGG: dfe:Dfer_5356 YCII-related protein; PFAM: YCII-related; SPTR: YCII-related protein; Activator of Hsp90 ATPase 1 family protein 1536680 10869852 Runsl_1331 Runella slithyformis DSM 19594 Activator of Hsp90 ATPase 1 family protein YP_004654890.1 1536252 R 761193 CDS YP_004654891.1 338210842 10869853 1536865..1537278 1 NC_015703.1 PFAM: YCII-related domain; COGs: COG4941 RNA polymerase sigma factor containing a TPR repeat domain; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_2782 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein 1537278 10869853 Runsl_1332 Runella slithyformis DSM 19594 hypothetical protein YP_004654891.1 1536865 D 761193 CDS YP_004654892.1 338210843 10869854 1537288..1538538 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1741 Pirin-related protein; InterPro IPR003829:IPR008778; KEGG: sli:Slin_5591 pirin; PFAM: Pirin, N-terminal; Pirin, C-terminal; SPTR: Pirin domain protein; ECF subfamily RNA polymerase sigma-24 subunit 1538538 10869854 Runsl_1333 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004654892.1 1537288 D 761193 CDS YP_004654893.1 338210844 10869855 complement(1538541..1539422) 1 NC_015703.1 PFAM: Pirin C-terminal cupin domain; Pirin; COGs: COG0400 esterase; InterPro IPR003140; KEGG: cpi:Cpin_5017 phospholipase/carboxylesterase; PFAM: Phospholipase/carboxylesterase; SPTR: Phospholipase/Carboxylesterase; pirin 1539422 10869855 Runsl_1334 Runella slithyformis DSM 19594 pirin YP_004654893.1 1538541 R 761193 CDS YP_004654894.1 338210845 10869856 complement(1539419..1540045) 1 NC_015703.1 PFAM: Phospholipase/Carboxylesterase; COGs: COG0346 Lactoylglutathione lyase and related lyase; InterPro IPR004360; KEGG: sli:Slin_5510 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxylase; phospholipase/carboxylesterase 1540045 10869856 Runsl_1335 Runella slithyformis DSM 19594 phospholipase/carboxylesterase YP_004654894.1 1539419 R 761193 CDS YP_004654895.1 338210846 10869857 complement(1540097..1541074) 1 NC_015703.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; InterPro IPR000835:IPR000182; KEGG: fjo:Fjoh_4320 MarR family transcriptional regulator; PFAM: GCN5-related N-acetyltransferase; HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; Glyoxalase/bleomycin resistance protein/dioxygenase 1541074 10869857 Runsl_1336 Runella slithyformis DSM 19594 Glyoxalase/bleomycin resistance protein/dioxygenase YP_004654895.1 1540097 R 761193 CDS YP_004654896.1 338210847 10869858 1541512..1542465 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; InterPro IPR004360; KEGG: sti:Sthe_3215 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; N-acetyltransferase GCN5 1542465 10869858 Runsl_1337 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004654896.1 1541512 D 761193 CDS YP_004654897.1 338210848 10869859 complement(1542506..1543462) 1 NC_015703.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: ppn:Palpr_0322 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: transcriptional regulator; Glyoxalase/bleomycin resistance protein/dioxygenase 1543462 10869859 Runsl_1338 Runella slithyformis DSM 19594 Glyoxalase/bleomycin resistance protein/dioxygenase YP_004654897.1 1542506 R 761193 CDS YP_004654898.1 338210849 10869860 complement(1543577..1544449) 1 NC_015703.1 PFAM: AraC-like ligand binding domain; KEGG: ava:Ava_4034 PilT protein-like protein; SPTR: PilT protein-like protein; AraC family transcriptional regulator 1544449 10869860 Runsl_1339 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004654898.1 1543577 R 761193 CDS YP_004654899.1 338210850 10869861 complement(1544504..1545115) 1 NC_015703.1 COGs: COG2255 Holliday junction resolvasome helicase subunit; HAMAP: DNA helicase, Holliday junction RuvB type; InterProIPR004605:IPR008824:IPR003959:IPR008823:IPR 003593; KEGG: dfe:Dfer_3690 Holliday junction DNA helicase RuvB; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: Holliday junction ATP-dependent DNA helicase ruvB; TIGRFAM: DNA helicase, Holliday junction RuvB type; hypothetical protein 1545115 10869861 Runsl_1340 Runella slithyformis DSM 19594 hypothetical protein YP_004654899.1 1544504 R 761193 CDS YP_004654900.1 338210851 10869862 complement(1545248..1546261) 1 NC_015703.1 PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit; KEGG: sli:Slin_4186 hypothetical protein; SPTR: uncharacterized protein; Holliday junction DNA helicase subunit RuvB 1546261 10869862 Runsl_1341 Runella slithyformis DSM 19594 Holliday junction DNA helicase subunit RuvB YP_004654900.1 1545248 R 761193 CDS YP_004654901.1 338210852 10869863 1546400..1547086 1 NC_015703.1 hypothetical protein 1547086 10869863 Runsl_1342 Runella slithyformis DSM 19594 hypothetical protein YP_004654901.1 1546400 D 761193 CDS YP_004654902.1 338210853 10869864 1547363..1547533 1 NC_015703.1 KEGG: sli:Slin_6908 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1547533 10869864 Runsl_1343 Runella slithyformis DSM 19594 hypothetical protein YP_004654902.1 1547363 D 761193 CDS YP_004654903.1 338210854 10869865 1547530..1548204 1 NC_015703.1 hypothetical protein 1548204 10869865 Runsl_1344 Runella slithyformis DSM 19594 hypothetical protein YP_004654903.1 1547530 D 761193 CDS YP_004654904.1 338210855 10869866 1548161..1548388 1 NC_015703.1 KEGG: sli:Slin_4185 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1548388 10869866 Runsl_1345 Runella slithyformis DSM 19594 hypothetical protein YP_004654904.1 1548161 D 761193 CDS YP_004654905.1 338210856 10869867 complement(1548487..1548966) 1 NC_015703.1 hypothetical protein 1548966 10869867 Runsl_1346 Runella slithyformis DSM 19594 hypothetical protein YP_004654905.1 1548487 R 761193 CDS YP_004654906.1 338210857 10869868 1549090..1549668 1 NC_015703.1 PFAM: Ndr family; hypothetical protein 1549668 10869868 Runsl_1347 Runella slithyformis DSM 19594 hypothetical protein YP_004654906.1 1549090 D 761193 CDS YP_004654907.1 338210858 10869869 complement(1549876..1550346) 1 NC_015703.1 hypothetical protein 1550346 10869869 Runsl_1348 Runella slithyformis DSM 19594 hypothetical protein YP_004654907.1 1549876 R 761193 CDS YP_004654908.1 338210859 10869870 complement(1550525..1550887) 1 NC_015703.1 hypothetical protein 1550887 10869870 Runsl_1349 Runella slithyformis DSM 19594 hypothetical protein YP_004654908.1 1550525 R 761193 CDS YP_004654909.1 338210860 10869871 complement(1551057..1551314) 1 NC_015703.1 hypothetical protein 1551314 10869871 Runsl_1350 Runella slithyformis DSM 19594 hypothetical protein YP_004654909.1 1551057 R 761193 CDS YP_004654910.1 338210861 10869872 complement(1551327..1551509) 1 NC_015703.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: rmr:Rmar_0728 OmpA/MotB domain-containing protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; hypothetical protein 1551509 10869872 Runsl_1351 Runella slithyformis DSM 19594 hypothetical protein YP_004654910.1 1551327 R 761193 CDS YP_004654911.1 338210862 10869873 complement(1551531..1552235) 1 NC_015703.1 PFAM: OmpA family; COGs: COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); InterPro IPR008331; KEGG: cyc:PCC7424_1076 ferritin Dps family protein; PFAM: Ferritin/Dps protein; SPTR: Ferritin Dps family protein; OmpA/MotB domain-containing protein 1552235 10869873 Runsl_1352 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004654911.1 1551531 R 761193 CDS YP_004654912.1 338210863 10869874 complement(1552246..1552713) 1 NC_015703.1 PFAM: Ferritin-like domain; ferritin 1552713 10869874 Runsl_1353 Runella slithyformis DSM 19594 ferritin YP_004654912.1 1552246 R 761193 CDS YP_004654913.1 338210864 10869875 complement(1552868..1553047) 1 NC_015703.1 KEGG: cpi:Cpin_1932 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1553047 10869875 Runsl_1354 Runella slithyformis DSM 19594 hypothetical protein YP_004654913.1 1552868 R 761193 CDS YP_004654914.1 338210865 10869876 complement(1553198..1553350) 1 NC_015703.1 manually curated; hypothetical protein 1553350 10869876 Runsl_1355 Runella slithyformis DSM 19594 hypothetical protein YP_004654914.1 1553198 R 761193 CDS YP_004654915.1 338210866 10869878 1553723..1554598 1 NC_015703.1 COGs: COG3852 Signal transduction histidine kinase nitrogen specific; InterProIPR000014:IPR001789:IPR013767:IPR003661:IPR 003594; KEGG: dfe:Dfer_2748 signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; PAS fold; SMART: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS; hypothetical protein 1554598 10869878 Runsl_1357 Runella slithyformis DSM 19594 hypothetical protein YP_004654915.1 1553723 D 761193 CDS YP_004654916.1 338210867 10869879 complement(1554669..1556126) 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789; KEGG: amr:AM1_1726 response regulator; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator; signal transduction histidine kinase, nitrogen specific, NtrB 1556126 10869879 Runsl_1358 Runella slithyformis DSM 19594 signal transduction histidine kinase, nitrogen specific, NtrB YP_004654916.1 1554669 R 761193 CDS YP_004654917.1 338210868 10869880 complement(1556126..1556596) 1 NC_015703.1 PFAM: Response regulator receiver domain; COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR000014:IPR013655:IPR003661:IPR003594:IPR 001610; KEGG: sli:Slin_4322 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-3; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAC motif; SPTR: PAS fold family; TIGRFAM: PAS; response regulator receiver protein 1556596 10869880 Runsl_1359 Runella slithyformis DSM 19594 response regulator receiver protein YP_004654917.1 1556126 R 761193 CDS YP_004654918.1 338210869 10869881 complement(1556664..1558250) 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR002078:IPR002197:IPR003593; KEGG: dfe:Dfer_2749 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family; PAS/PAC sensor signal transduction histidine kinase 1558250 10869881 Runsl_1360 Runella slithyformis DSM 19594 PAS/PAC sensor signal transduction histidine kinase YP_004654918.1 1556664 R 761193 CDS YP_004654919.1 338210870 10869882 complement(1558250..1559725) 1 NC_015703.1 PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR000394:IPR007046:IPR007634; KEGG: dfe:Dfer_2750 RNA polymerase, sigma 54 subunit, RpoN; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54; SPTR: RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma factor 54; Fis family transcriptional regulator 1559725 10869882 Runsl_1361 Runella slithyformis DSM 19594 Fis family transcriptional regulator YP_004654919.1 1558250 R 761193 CDS YP_004654920.1 338210871 10869883 complement(1559866..1561299) 1 NC_015703.1 PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54, DNA binding domain; Sigma-54 factor, core binding domain; TIGRFAM: RNA polymerase sigma-54 factor; COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR007891:IPR003661:IPR003594; KEGG: sli:Slin_2719 histidine kinase; PFAM: CHASE3; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase; RNA polymerase sigma 54 subunit RpoN 1561299 10869883 Runsl_1362 Runella slithyformis DSM 19594 RNA polymerase sigma 54 subunit RpoN YP_004654920.1 1559866 R 761193 CDS YP_004654921.1 338210872 10869884 1561550..1562944 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; CHASE3 domain; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789; KEGG: lic:LIC11201 response regulator; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator Rcp1; integral membrane sensor signal transduction histidine kinase 1562944 10869884 Runsl_1363 Runella slithyformis DSM 19594 integral membrane sensor signal transduction histidine kinase YP_004654921.1 1561550 D 761193 CDS YP_004654922.1 338210873 10869885 1562977..1563423 1 NC_015703.1 PFAM: Response regulator receiver domain; response regulator receiver protein 1563423 10869885 Runsl_1364 Runella slithyformis DSM 19594 response regulator receiver protein YP_004654922.1 1562977 D 761193 CDS YP_004654923.1 338210874 10869886 complement(1563416..1563919) 1 NC_015703.1 KEGG: psn:Pedsa_2779 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1563919 10869886 Runsl_1365 Runella slithyformis DSM 19594 hypothetical protein YP_004654923.1 1563416 R 761193 CDS YP_004654924.1 338210875 10869887 complement(1563909..1564274) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1469); KEGG: wvi:Weevi_1691 hypothetical protein; SPTR: Aspartyl-tRNA synthetase; hypothetical protein 1564274 10869887 Runsl_1366 Runella slithyformis DSM 19594 hypothetical protein YP_004654924.1 1563909 R 761193 CDS YP_004654925.1 338210876 10869888 complement(1564341..1564652) 1 NC_015703.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: cpi:Cpin_2890 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; hypothetical protein 1564652 10869888 Runsl_1367 Runella slithyformis DSM 19594 hypothetical protein YP_004654925.1 1564341 R 761193 CDS YP_004654926.1 338210877 10869889 1564900..1565265 1 NC_015703.1 PFAM: Response regulator receiver domain; KEGG: ckp:ckrop_0034 hypothetical protein; SPTR: uncharacterized protein; response regulator receiver protein 1565265 10869889 Runsl_1368 Runella slithyformis DSM 19594 response regulator receiver protein YP_004654926.1 1564900 D 761193 CDS YP_004654927.1 338210878 10869890 complement(1565615..1565932) 1 NC_015703.1 hypothetical protein 1565932 10869890 Runsl_1369 Runella slithyformis DSM 19594 hypothetical protein YP_004654927.1 1565615 R 761193 CDS YP_004654928.1 338210879 10869891 complement(1565963..1566223) 1 NC_015703.1 InterPro IPR011971:IPR019052; KEGG: dfe:Dfer_3187 hypothetical protein; PFAM: Protein of unknown function DUF2383; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02284; hypothetical protein 1566223 10869891 Runsl_1370 Runella slithyformis DSM 19594 hypothetical protein YP_004654928.1 1565963 R 761193 CDS YP_004654929.1 338210880 10869892 1566380..1566913 1 NC_015703.1 PFAM: Domain of unknown function (DUF2383); TIGRFAM: conserved hypothetical protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_3071 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein 1566913 10869892 Runsl_1371 Runella slithyformis DSM 19594 hypothetical protein YP_004654929.1 1566380 D 761193 CDS YP_004654930.1 338210881 10869893 1566972..1567541 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931; KEGG: dfe:Dfer_4408 transglutaminase domain protein; PFAM: Transglutaminase-like; SMART: Transglutaminase-like; SPTR: Transglutaminase domain protein; ECF subfamily RNA polymerase sigma-24 subunit 1567541 10869893 Runsl_1372 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004654930.1 1566972 D 761193 CDS YP_004654931.1 338210882 10869894 complement(1567643..1568437) 1 NC_015703.1 PFAM: Transglutaminase-like superfamily; transglutaminase domain-containing protein 1568437 10869894 Runsl_1373 Runella slithyformis DSM 19594 transglutaminase domain-containing protein YP_004654931.1 1567643 R 761193 CDS YP_004654932.1 338210883 10869895 complement(1568517..1568909) 1 NC_015703.1 KEGG: lby:Lbys_2890 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1568909 10869895 Runsl_1374 Runella slithyformis DSM 19594 hypothetical protein YP_004654932.1 1568517 R 761193 CDS YP_004654933.1 338210884 10869896 complement(1569017..1569475) 1 NC_015703.1 COGs: COG0296 1 4-alpha-glucan branching enzyme; InterPro IPR004193:IPR006047:IPR006048:IPR006589; KEGG: dfe:Dfer_0213 glycoside hydrolase 13 domain protein; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic region; Alpha-amylase, C-terminal all beta; PRIAM: 1,4-alpha-glucan branching enzyme; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; SPTR: Maltooligosyl trehalose hydrolase; hypothetical protein 1569475 10869896 Runsl_1375 Runella slithyformis DSM 19594 hypothetical protein YP_004654933.1 1569017 R 761193 CDS YP_004654934.1 338210885 10869897 complement(1569507..1571321) 1 NC_015703.1 PFAM: Alpha amylase, C-terminal all-beta domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain; TIGRFAM: alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase; malto-oligosyltrehalose trehalohydrolase; COGs: COG0628 permease; InterPro IPR002549; KEGG: dfe:Dfer_4013 protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; SPTR: uncharacterized protein; 1,4-alpha-glucan-branching protein 1571321 10869897 Runsl_1376 Runella slithyformis DSM 19594 1,4-alpha-glucan-branching protein YP_004654934.1 1569507 R 761193 CDS YP_004654935.1 338210886 10869898 complement(1571478..1572671) 1 NC_015703.1 PFAM: Domain of unknown function DUF20; KEGG: ava:Ava_4160 VCBS; SPTR: VCBS; hypothetical protein 1572671 10869898 Runsl_1377 Runella slithyformis DSM 19594 hypothetical protein YP_004654935.1 1571478 R 761193 CDS YP_004654936.1 338210887 10869899 1572821..1573084 1 NC_015703.1 KEGG: dfe:Dfer_2635 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1573084 10869899 Runsl_1378 Runella slithyformis DSM 19594 hypothetical protein YP_004654936.1 1572821 D 761193 CDS YP_004654937.1 338210888 10869900 complement(1573246..1573905) 1 NC_015703.1 hypothetical protein 1573905 10869900 Runsl_1379 Runella slithyformis DSM 19594 hypothetical protein YP_004654937.1 1573246 R 761193 CDS YP_004654938.1 338210889 10869901 1573966..1574136 1 NC_015703.1 COGs: COG3828 conserved hypothetical protein; KEGG: sli:Slin_3440 PKD domain containing protein; SPTR: PKD domain containing protein; hypothetical protein 1574136 10869901 Runsl_1380 Runella slithyformis DSM 19594 hypothetical protein YP_004654938.1 1573966 D 761193 CDS YP_004654939.1 338210890 10869902 complement(1574065..1574826) 1 NC_015703.1 PFAM: Trehalose utilisation; InterPro IPR006694; KEGG: sli:Slin_5702 fatty acid hydroxylase; PFAM: Fatty acid hydroxylase; SPTR: Fatty acid hydroxylase; PKD domain-containing protein 1574826 10869902 Runsl_1381 Runella slithyformis DSM 19594 PKD domain-containing protein YP_004654939.1 1574065 R 761193 CDS YP_004654940.1 338210891 10869903 complement(1574926..1575498) 1 NC_015703.1 PFAM: Fatty acid hydroxylase superfamily; COGs: COG1164 Oligoendopeptidase F; InterPro IPR011976:IPR001567; KEGG: sli:Slin_5185 oligoendopeptidase, M3 family; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; SPTR: Oligoendopeptidase, M3 family; TIGRFAM: Peptidase M3B, oligoendopeptidase-related clade 2; fatty acid hydroxylase 1575498 10869903 Runsl_1382 Runella slithyformis DSM 19594 fatty acid hydroxylase YP_004654940.1 1574926 R 761193 CDS YP_004654941.1 338210892 10869904 1575514..1577238 1 NC_015703.1 PFAM: Peptidase M3; TIGRFAM: oligoendopeptidase, M3 family; InterPro IPR019298; KEGG: sli:Slin_0320 hypothetical protein; PFAM: Nucleotide-binding protein, PIN domain; SPTR: uncharacterized protein; oligoendopeptidase 1577238 10869904 Runsl_1383 Runella slithyformis DSM 19594 oligoendopeptidase YP_004654941.1 1575514 D 761193 CDS YP_004654942.1 338210893 10869905 complement(1577278..1577700) 1 NC_015703.1 PFAM: Predicted nucleotide-binding protein, containing PIN domain; Nucleotide-binding protein, PIN domain-containing protein 1577700 10869905 Runsl_1384 Runella slithyformis DSM 19594 Nucleotide-binding protein, PIN domain-containing protein YP_004654942.1 1577278 R 761193 CDS YP_004654943.1 338210894 10869906 complement(1577697..1577927) 1 NC_015703.1 COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: sli:Slin_6038 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28; hypothetical protein 1577927 10869906 Runsl_1385 Runella slithyformis DSM 19594 hypothetical protein YP_004654943.1 1577697 R 761193 CDS YP_004654944.1 338210895 10869907 1577999..1579435 1 NC_015703.1 PFAM: PA domain; Peptidase M28; InterPro IPR006311:IPR010869; KEGG: dfe:Dfer_3701 protein of unknown function DUF1501; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein; peptidase M28 1579435 10869907 Runsl_1386 Runella slithyformis DSM 19594 peptidase M28 YP_004654944.1 1577999 D 761193 CDS YP_004654945.1 338210896 10869908 complement(1579577..1581070) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1501); InterPro IPR005804; KEGG: mtt:Ftrac_0880 alkane 1-monooxygenase; PFAM: Fatty acid desaturase, type 1; PRIAM: Alkane 1-monooxygenase; SPTR: Alkane 1-monooxygenase; hypothetical protein 1581070 10869908 Runsl_1387 Runella slithyformis DSM 19594 hypothetical protein YP_004654945.1 1579577 R 761193 CDS YP_004654946.1 338210897 10869909 complement(1581128..1582273) 1 NC_015703.1 PFAM: Fatty acid desaturase; KEGG: sli:Slin_0424 hypothetical protein; SPTR: uncharacterized protein; alkane 1-monooxygenase 1582273 10869909 Runsl_1388 Runella slithyformis DSM 19594 alkane 1-monooxygenase YP_004654946.1 1581128 R 761193 CDS YP_004654947.1 338210898 10869910 1582465..1583214 1 NC_015703.1 KEGG: sli:Slin_0423 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1583214 10869910 Runsl_1389 Runella slithyformis DSM 19594 hypothetical protein YP_004654947.1 1582465 D 761193 CDS YP_004654948.1 338210899 10869911 1583236..1583649 1 NC_015703.1 PFAM: Protein of unknown function (DUF2846); COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_0422 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; hypothetical protein 1583649 10869911 Runsl_1390 Runella slithyformis DSM 19594 hypothetical protein YP_004654948.1 1583236 D 761193 CDS YP_004654949.1 338210900 10869912 1583646..1584662 1 NC_015703.1 PFAM: Histidine kinase; signal transduction histidine kinase 1584662 10869912 Runsl_1391 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004654949.1 1583646 D 761193 CDS YP_004654950.1 338210901 10869913 1584718..1584915 1 NC_015703.1 KEGG: sli:Slin_5138 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1584915 10869913 Runsl_1392 Runella slithyformis DSM 19594 hypothetical protein YP_004654950.1 1584718 D 761193 CDS YP_004654951.1 338210902 10869914 1584881..1585396 1 NC_015703.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_0421 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; hypothetical protein 1585396 10869914 Runsl_1393 Runella slithyformis DSM 19594 hypothetical protein YP_004654951.1 1584881 D 761193 CDS YP_004654952.1 338210903 10869915 1585400..1586077 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: dfe:Dfer_5692 protein of unknown function DUF433; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein; LytTR family two component transcriptional regulator 1586077 10869915 Runsl_1394 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004654952.1 1585400 D 761193 CDS YP_004654953.1 338210904 10869916 complement(1586105..1586347) 1 NC_015703.1 PFAM: Protein of unknown function (DUF433); COGs: COG0415 Deoxyribodipyrimidine photolyase; InterPro IPR006050:IPR005101; KEGG: sli:Slin_0029 deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal; PRIAM: Deoxyribodipyrimidine photo-lyase; SPTR: Deoxyribodipyrimidine photo-lyase; hypothetical protein 1586347 10869916 Runsl_1395 Runella slithyformis DSM 19594 hypothetical protein YP_004654953.1 1586105 R 761193 CDS YP_004654954.1 338210905 10869917 complement(1586399..1587709) 1 NC_015703.1 PFAM: FAD binding domain of DNA photolyase; DNA photolyase; COGs: COG3448 CBS-domain-containing membrane protein; InterPro IPR000644; KEGG: fjo:Fjoh_1068 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; SPTR: CBS domain containing protein; deoxyribodipyrimidine photo-lyase 1587709 10869917 Runsl_1396 Runella slithyformis DSM 19594 deoxyribodipyrimidine photo-lyase YP_004654954.1 1586399 R 761193 CDS YP_004654955.1 338210906 10869918 complement(1587769..1588185) 1 NC_015703.1 PFAM: CBS domain; COGs: COG1003 Glycine cleavage system protein P (pyridoxal-binding) C-terminal domain; HAMAP: Glycine cleavage system P-protein; InterPro IPR003437:IPR020580; KEGG: dfe:Dfer_4078 glycine dehydrogenase; PFAM: Glycine cleavage system P-protein, N-terminal; SPTR: Glycine dehydrogenase [decarboxylating]; TIGRFAM: Glycine cleavage system P-protein; hypothetical protein 1588185 10869918 Runsl_1397 Runella slithyformis DSM 19594 hypothetical protein YP_004654955.1 1587769 R 761193 CDS YP_004654956.1 338210907 10869919 complement(1588363..1591275) 1 NC_015703.1 PFAM: Glycine cleavage system P-protein; TIGRFAM: glycine dehydrogenase (decarboxylating); COGs: COG3664 Beta-xylosidase; InterPro IPR000514; KEGG: dfe:Dfer_5268 glycoside hydrolase 39; PFAM: Glycoside hydrolase, family 39; PRIAM: Xylan 1,4-beta-xylosidase; SPTR: Glycoside hydrolase 39; glycine dehydrogenase 1591275 10869919 Runsl_1398 Runella slithyformis DSM 19594 glycine dehydrogenase YP_004654956.1 1588363 R 761193 CDS YP_004654957.1 338210908 10869920 1591700..1593379 1 NC_015703.1 PFAM: Glycosyl hydrolases family 39; COGs: COG2368 Aromatic ring hydroxylase; InterPro IPR004925; KEGG: nmr:Nmar_0207 vinylacetyl-CoA delta-isomerase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase; PRIAM: Vinylacetyl-CoA Delta-isomerase; SPTR: 4-hydroxyphenylacetate 3-hydroxylase; xylan 1,4-beta-xylosidase 1593379 10869920 Runsl_1399 Runella slithyformis DSM 19594 xylan 1,4-beta-xylosidase YP_004654957.1 1591700 D 761193 CDS YP_004654958.1 338210909 10869921 complement(1593476..1594993) 1 NC_015703.1 PFAM: 4-hydroxyphenylacetate 3-hydroxylase N terminal; 4-hydroxyphenylacetate 3-hydroxylase C terminal; COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: dal:Dalk_1293 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR: Enoyl-CoA hydratase/isomerase; Vinylacetyl-CoA Delta-isomerase 1594993 10869921 Runsl_1400 Runella slithyformis DSM 19594 Vinylacetyl-CoA Delta-isomerase YP_004654958.1 1593476 R 761193 CDS YP_004654959.1 338210910 10869922 complement(1595073..1595828) 1 NC_015703.1 PFAM: Enoyl-CoA hydratase/isomerase; COGs: COG1257 Hydroxymethylglutaryl-CoA reductase; InterPro IPR002202; KEGG: gpb:HDN1F_32470 similar to hydroxymethylglutaryl-CoA reductase (NADPH); PFAM: Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic; PRIAM: Hydroxymethylglutaryl-CoA reductase (NADPH); SPTR: Similar to hydroxymethylglutaryl-CoA reductase (NADPH); enoyl-CoA hydratase 1595828 10869922 Runsl_1401 Runella slithyformis DSM 19594 enoyl-CoA hydratase YP_004654959.1 1595073 R 761193 CDS YP_004654960.1 338210911 10869923 complement(1595877..1597163) 1 NC_015703.1 PFAM: Hydroxymethylglutaryl-coenzyme A reductase; TIGRFAM: 3-hydroxy-3-methylglutaryl Coenzyme A reductase, hydroxymethylglutaryl-CoA reductase (NADP); COGs: COG3384 conserved hypothetical protein; InterPro IPR004183; KEGG: cpi:Cpin_4445 extradiol ring-cleavage dioxygenase class III protein subunit B; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; SPTR: Extradiol ring-cleavage dioxygenase class III protein subunit B; hydroxymethylglutaryl-CoA reductase (NADPH) 1597163 10869923 Runsl_1402 Runella slithyformis DSM 19594 hydroxymethylglutaryl-CoA reductase (NADPH) YP_004654960.1 1595877 R 761193 CDS YP_004654961.1 338210912 10869924 complement(1597182..1598144) 1 NC_015703.1 PFAM: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro IPR010720; KEGG: dfe:Dfer_1570 hypothetical protein; SMART: Alpha-L-arabinofuranosidase, C-terminal; SPTR: uncharacterized protein; extradiol ring-cleavage dioxygenase class III protein subunit B 1598144 10869924 Runsl_1403 Runella slithyformis DSM 19594 extradiol ring-cleavage dioxygenase class III protein subunit B YP_004654961.1 1597182 R 761193 CDS YP_004654962.1 338210913 10869925 1598253..1600133 1 NC_015703.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: sli:Slin_0234 aldo/keto reductase; PFAM: Aldo/keto reductase; SPTR: Aldo/keto reductase; alpha-L-arabinofuranosidase 1600133 10869925 Runsl_1404 Runella slithyformis DSM 19594 alpha-L-arabinofuranosidase YP_004654962.1 1598253 D 761193 CDS YP_004654963.1 338210914 10869926 1600196..1601182 1 NC_015703.1 PFAM: Aldo/keto reductase; COGs: COG3254 conserved hypothetical protein; HAMAP: L-rhamnose 1-epimerase; InterPro IPR013448:IPR008000; KEGG: sli:Slin_1807 L-rhamnose 1-epimerase; PFAM: Rhamnose mutarotase; SPTR: L-rhamnose 1-epimerase; TIGRFAM: L-rhamnose 1-epimerase; aldo/keto reductase 1601182 10869926 Runsl_1405 Runella slithyformis DSM 19594 aldo/keto reductase YP_004654963.1 1600196 D 761193 CDS YP_004654964.1 338210915 10869927 1601212..1601598 1 NC_015703.1 PFAM: Domain of unknown function (DUF718); TIGRFAM: L-rhamnose 1-epimerase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683:IPR004104; KEGG: fbc:FB2170_00605 hypothetical protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: uncharacterized protein; L-rhamnose mutarotase 1601598 10869927 Runsl_1406 Runella slithyformis DSM 19594 L-rhamnose mutarotase YP_004654964.1 1601212 D 761193 CDS YP_004654965.1 338210916 10869928 1601648..1602997 1 NC_015703.1 PFAM: Oxidoreductase, C-terminal alpha/beta domain; Oxidoreductase, NAD-binding Rossmann fold; InterPro IPR006869; KEGG: cao:Celal_0940 hypothetical protein; PFAM: Protein of unknown function DUF547; SPTR: uncharacterized protein; oxidoreductase domain-containing protein 1602997 10869928 Runsl_1407 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004654965.1 1601648 D 761193 CDS YP_004654966.1 338210917 10869929 complement(1603046..1603804) 1 NC_015703.1 PFAM: Protein of unknown function, DUF547; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_3075 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; hypothetical protein 1603804 10869929 Runsl_1408 Runella slithyformis DSM 19594 hypothetical protein YP_004654966.1 1603046 R 761193 CDS YP_004654967.1 338210918 10869930 1603986..1604774 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG2030 Acyl dehydratase; InterPro IPR002539; KEGG: sli:Slin_3533 MaoC domain protein dehydratase; PFAM: MaoC-like dehydratase; SPTR: MaoC domain protein dehydratase; 3-oxoacyl-ACP reductase 1604774 10869930 Runsl_1409 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004654967.1 1603986 D 761193 CDS YP_004654968.1 338210919 10869931 1604915..1605322 1 NC_015703.1 PFAM: MaoC like domain; COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; HAMAP: Maf-like protein; InterPro IPR003697; KEGG: dfe:Dfer_2424 maf protein; PFAM: Maf-like protein; SPTR: Maf-like protein Dfer_2424; TIGRFAM: Maf-like protein; acyl dehydratase MaoC 1605322 10869931 Runsl_1410 Runella slithyformis DSM 19594 acyl dehydratase MaoC YP_004654968.1 1604915 D 761193 CDS YP_004654969.1 338210920 10869932 1605332..1605910 1 NC_015703.1 PFAM: Maf-like protein; TIGRFAM: MAF protein; KEGG: sli:Slin_0715 hypothetical protein; SPTR: uncharacterized protein; septum formation protein Maf 1605910 10869932 Runsl_1411 Runella slithyformis DSM 19594 septum formation protein Maf YP_004654969.1 1605332 D 761193 CDS YP_004654970.1 338210921 10869933 1606034..1606813 1 NC_015703.1 KEGG: mtt:Ftrac_3362 hypothetical protein; SPTR: Membrane protein; hypothetical protein 1606813 10869933 Runsl_1412 Runella slithyformis DSM 19594 hypothetical protein YP_004654970.1 1606034 D 761193 CDS YP_004654971.1 338210922 10869934 complement(1606810..1608174) 1 NC_015703.1 PFAM: Protein of unknown function (DUF2029); HAMAP: 50S ribosomal protein L34; InterPro IPR000271; KEGG: dfe:Dfer_3852 ribosomal protein L34; PFAM: Ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: Ribosomal protein L34; hypothetical protein 1608174 10869934 Runsl_1413 Runella slithyformis DSM 19594 hypothetical protein YP_004654971.1 1606810 R 761193 CDS YP_004654972.1 338210923 10869935 1608348..1608506 1 NC_015703.1 PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; HAMAP: Ribonuclease P; InterPro IPR000100; KEGG: dfe:Dfer_3851 ribonuclease P protein component; SPTR: Ribonuclease P protein component; TIGRFAM: Ribonuclease P; 50S ribosomal protein L34 1608506 10869935 Runsl_1414 Runella slithyformis DSM 19594 50S ribosomal protein L34 YP_004654972.1 1608348 D 761193 CDS YP_004654973.1 338210924 10869936 1608590..1608997 1 NC_015703.1 PFAM: Ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: sli:Slin_5611 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family; ribonuclease P protein component 1608997 10869936 Runsl_1415 Runella slithyformis DSM 19594 ribonuclease P protein component YP_004654973.1 1608590 D 761193 CDS YP_004654974.1 338210925 10869937 1609162..1609863 1 NC_015703.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; HAMAP: NAD(P)H-quinone oxidoreductase subunit H; InterPro IPR001135; KEGG: dfe:Dfer_3733 NADH dehydrogenase (quinone); PFAM: NADH-quinone oxidoreductase, subunit D; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH dehydrogenase (Quinone); winged helix family two component transcriptional regulator 1609863 10869937 Runsl_1416 Runella slithyformis DSM 19594 winged helix family two component transcriptional regulator YP_004654974.1 1609162 D 761193 CDS YP_004654975.1 338210926 10869938 complement(1609943..1611163) 1 NC_015703.1 PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; NAD(P)H-quinone oxidoreductase subunit H 1611163 10869938 Runsl_1417 Runella slithyformis DSM 19594 NAD(P)H-quinone oxidoreductase subunit H YP_004654975.1 1609943 R 761193 CDS YP_004654976.1 338210927 10869939 1611353..1611511 1 NC_015703.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047:IPR013247; KEGG: sli:Slin_6234 peptidase M23; PFAM: Peptidase M23; SH3, type 3; SPTR: Peptidase M23; hypothetical protein 1611511 10869939 Runsl_1418 Runella slithyformis DSM 19594 hypothetical protein YP_004654976.1 1611353 D 761193 CDS YP_004654977.1 338210928 10869940 1611508..1612863 1 NC_015703.1 PFAM: Peptidase M23; Bacterial SH3 domain; KEGG: dfe:Dfer_3230 hypothetical protein; SPTR: uncharacterized protein; peptidase M23 1612863 10869940 Runsl_1419 Runella slithyformis DSM 19594 peptidase M23 YP_004654977.1 1611508 D 761193 CDS YP_004654978.1 338210929 10869941 1613014..1613580 1 NC_015703.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3424 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; manually curated; hypothetical protein 1613580 10869941 Runsl_1420 Runella slithyformis DSM 19594 hypothetical protein YP_004654978.1 1613014 D 761193 CDS YP_004654979.1 338210930 10869942 complement(1613653..1616094) 1 NC_015703.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; COGs: COG0671 Membrane-associated phospholipid phosphatase; InterPro IPR000326; KEGG: ppn:Palpr_2396 phosphoesterase pa-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: Phosphoesterase PA-phosphatase related protein; TonB-dependent receptor 1616094 10869942 Runsl_1421 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004654979.1 1613653 R 761193 CDS YP_004654980.1 338210931 10869943 complement(1616269..1616877) 1 NC_015703.1 PFAM: PAP2 superfamily; InterPro IPR002781; KEGG: chu:CHU_0807 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: uncharacterized protein; phosphoesterase PA-phosphatase-like protein 1616877 10869943 Runsl_1422 Runella slithyformis DSM 19594 phosphoesterase PA-phosphatase-like protein YP_004654980.1 1616269 R 761193 CDS YP_004654981.1 338210932 10869944 complement(1616903..1617628) 1 NC_015703.1 PFAM: Sulfite exporter TauE/SafE; COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: sli:Slin_6105 hypothetical protein; PFAM: Protein of unknown function DUF58; SPTR: uncharacterized protein; hypothetical protein 1617628 10869944 Runsl_1423 Runella slithyformis DSM 19594 hypothetical protein YP_004654981.1 1616903 R 761193 CDS YP_004654982.1 338210933 10869945 complement(1617687..1618556) 1 NC_015703.1 PFAM: Protein of unknown function DUF58; KEGG: dfe:Dfer_3843 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1618556 10869945 Runsl_1424 Runella slithyformis DSM 19594 hypothetical protein YP_004654982.1 1617687 R 761193 CDS YP_004654983.1 338210934 10869946 1618601..1618960 1 NC_015703.1 KEGG: sli:Slin_6086 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1618960 10869946 Runsl_1425 Runella slithyformis DSM 19594 hypothetical protein YP_004654983.1 1618601 D 761193 CDS YP_004654984.1 338210935 10869947 1618962..1619510 1 NC_015703.1 COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: dfe:Dfer_3384 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR; hypothetical protein 1619510 10869947 Runsl_1426 Runella slithyformis DSM 19594 hypothetical protein YP_004654984.1 1618962 D 761193 CDS YP_004654985.1 338210936 10869948 complement(1619564..1619956) 1 NC_015703.1 PFAM: Biopolymer transport protein ExbD/TolR; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: dfe:Dfer_3385 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB proton channel; biopolymer transport protein ExbD/TolR 1619956 10869948 Runsl_1427 Runella slithyformis DSM 19594 biopolymer transport protein ExbD/TolR YP_004654985.1 1619564 R 761193 CDS YP_004654986.1 338210937 10869949 complement(1619983..1620672) 1 NC_015703.1 PFAM: MotA/TolQ/ExbB proton channel family; COGs: COG4111 conserved hypothetical protein; InterPro IPR000086; KEGG: cpi:Cpin_6951 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: uncharacterized protein; MotA/TolQ/ExbB proton channel 1620672 10869949 Runsl_1428 Runella slithyformis DSM 19594 MotA/TolQ/ExbB proton channel YP_004654986.1 1619983 R 761193 CDS YP_004654987.1 338210938 10869950 1620900..1621658 1 NC_015703.1 PFAM: NUDIX domain; KEGG: sli:Slin_2853 hypothetical protein; SPTR: uncharacterized protein; NUDIX hydrolase 1621658 10869950 Runsl_1429 Runella slithyformis DSM 19594 NUDIX hydrolase YP_004654987.1 1620900 D 761193 CDS YP_004654988.1 338210939 10869951 complement(1621662..1622153) 1 NC_015703.1 COGs: COG0405 Gamma-glutamyltransferase; InterPro IPR000101; KEGG: dfe:Dfer_3938 gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase; PRIAM: Gamma-glutamyltransferase; SPTR: Gamma-glutamyltransferase; TIGRFAM: Gamma-glutamyltranspeptidase; hypothetical protein 1622153 10869951 Runsl_1430 Runella slithyformis DSM 19594 hypothetical protein YP_004654988.1 1621662 R 761193 CDS YP_004654989.1 338210940 10869952 1622258..1624015 1 NC_015703.1 PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dfe:Dfer_3991 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; gamma-glutamyltransferase 1624015 10869952 Runsl_1431 Runella slithyformis DSM 19594 gamma-glutamyltransferase YP_004654989.1 1622258 D 761193 CDS YP_004654990.1 338210941 10869953 1624025..1624804 1 NC_015703.1 PFAM: alpha/beta hydrolase fold; InterPro IPR015414; KEGG: dfe:Dfer_3984 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein; SPTR: SNARE associated Golgi protein; alpha/beta hydrolase 1624804 10869953 Runsl_1432 Runella slithyformis DSM 19594 alpha/beta hydrolase YP_004654990.1 1624025 D 761193 CDS YP_004654991.1 338210942 10869954 complement(1624808..1625473) 1 NC_015703.1 PFAM: SNARE associated Golgi protein; COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR001001; KEGG: dfe:Dfer_3720 DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; PRIAM: DNA-directed DNA polymerase; SMART: DNA polymerase III, beta chain; SPTR: DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta chain; hypothetical protein 1625473 10869954 Runsl_1433 Runella slithyformis DSM 19594 hypothetical protein YP_004654991.1 1624808 R 761193 CDS YP_004654992.1 338210943 10869955 complement(1625544..1626671) 1 NC_015703.1 PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit; COGs: COG0082 Chorismate synthase; InterPro IPR000453; KEGG: dfe:Dfer_4064 chorismate synthase; PFAM: Chorismate synthase; PRIAM: Chorismate synthase; SPTR: Chorismate synthase; TIGRFAM: Chorismate synthase; DNA polymerase III subunit beta 1626671 10869955 Runsl_1434 Runella slithyformis DSM 19594 DNA polymerase III subunit beta YP_004654992.1 1625544 R 761193 CDS YP_004654993.1 338210944 10869956 complement(1626728..1627810) 1 NC_015703.1 PFAM: Chorismate synthase; TIGRFAM: chorismate synthase; KEGG: dfe:Dfer_4063 hypothetical protein; SPTR: uncharacterized protein; chorismate synthase 1627810 10869956 Runsl_1435 Runella slithyformis DSM 19594 chorismate synthase YP_004654993.1 1626728 R 761193 CDS YP_004654994.1 338210945 10869957 complement(1627810..1629225) 1 NC_015703.1 KEGG: dfe:Dfer_4062 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1629225 10869957 Runsl_1436 Runella slithyformis DSM 19594 hypothetical protein YP_004654994.1 1627810 R 761193 CDS YP_004654995.1 338210946 10869958 1629339..1629545 1 NC_015703.1 InterPro IPR013105:IPR001440:IPR019734; KEGG: dfe:Dfer_4061 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; SPTR: Tetratricopeptide TPR_2 repeat protein; hypothetical protein 1629545 10869958 Runsl_1437 Runella slithyformis DSM 19594 hypothetical protein YP_004654995.1 1629339 D 761193 CDS YP_004654996.1 338210947 10869959 complement(1629617..1631386) 1 NC_015703.1 COGs: COG0226 ABC-type phosphate transport system periplasmic component; KEGG: sli:Slin_5092 ABC-type phosphate transporter periplasmic component-like protein; SPTR: ABC-type phosphate transport system periplasmic component-like protein; hypothetical protein 1631386 10869959 Runsl_1438 Runella slithyformis DSM 19594 hypothetical protein YP_004654996.1 1629617 R 761193 CDS YP_004654997.1 338210948 10869960 complement(1631483..1632454) 1 NC_015703.1 KEGG: sli:Slin_5091 hypothetical protein; SPTR: uncharacterized protein; ABC-type phosphate transporter periplasmic component-like protein 1632454 10869960 Runsl_1439 Runella slithyformis DSM 19594 ABC-type phosphate transporter periplasmic component-like protein YP_004654997.1 1631483 R 761193 CDS YP_004654998.1 338210949 10869961 complement(1632399..1632617) 1 NC_015703.1 InterPro IPR006260:IPR003538; KEGG: sli:Slin_5090 TonB family protein; PFAM: Gram-negative bacterial tonB protein; SPTR: TonB family protein; TIGRFAM: TonB, C-terminal; hypothetical protein 1632617 10869961 Runsl_1440 Runella slithyformis DSM 19594 hypothetical protein YP_004654998.1 1632399 R 761193 CDS YP_004654999.1 338210950 10869962 complement(1632623..1633450) 1 NC_015703.1 PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; InterPro IPR003400; KEGG: dfe:Dfer_4057 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR; TonB family protein 1633450 10869962 Runsl_1441 Runella slithyformis DSM 19594 TonB family protein YP_004654999.1 1632623 R 761193 CDS YP_004655000.1 338210951 10869963 complement(1633484..1634053) 1 NC_015703.1 PFAM: Biopolymer transport protein ExbD/TolR; InterPro IPR003400; KEGG: sli:Slin_5088 biopolymertransporter ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 1634053 10869963 Runsl_1442 Runella slithyformis DSM 19594 biopolymer transport protein ExbD/TolR YP_004655000.1 1633484 R 761193 CDS YP_004655001.1 338210952 10869964 complement(1634084..1634713) 1 NC_015703.1 PFAM: Biopolymer transport protein ExbD/TolR; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: sli:Slin_5087 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB proton channel; biopolymer transport protein ExbD/TolR 1634713 10869964 Runsl_1443 Runella slithyformis DSM 19594 biopolymer transport protein ExbD/TolR YP_004655001.1 1634084 R 761193 CDS YP_004655002.1 338210953 10869965 complement(1634818..1635651) 1 NC_015703.1 PFAM: MotA/TolQ/ExbB proton channel family; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: mxa:MXAN_7310 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Oxidoreductase, short chain dehydrogenase/reductase; MotA/TolQ/ExbB proton channel 1635651 10869965 Runsl_1444 Runella slithyformis DSM 19594 MotA/TolQ/ExbB proton channel YP_004655002.1 1634818 R 761193 CDS YP_004655003.1 338210954 10869966 complement(1636114..1636941) 1 NC_015703.1 PFAM: short chain dehydrogenase; KEGG: sli:Slin_4946 hypothetical protein; SPTR: uncharacterized protein; short-chain dehydrogenase/reductase SDR 1636941 10869966 Runsl_1445 Runella slithyformis DSM 19594 short-chain dehydrogenase/reductase SDR YP_004655003.1 1636114 R 761193 CDS YP_004655004.1 338210955 10869967 1637093..1639435 1 NC_015703.1 TIGRFAM: conserved repeat domain; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_4945 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein; hypothetical protein 1639435 10869967 Runsl_1446 Runella slithyformis DSM 19594 hypothetical protein YP_004655004.1 1637093 D 761193 CDS YP_004655005.1 338210956 10869968 1639502..1641958 1 NC_015703.1 PFAM: WD40-like Beta Propeller Repeat; OmpA family; InterPro IPR004993; KEGG: sli:Slin_5924 GH3 auxin-responsive promoter; PFAM: GH3 auxin-responsive promoter; SPTR: GH3 auxin-responsive promoter; OmpA/MotB domain-containing protein 1641958 10869968 Runsl_1447 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004655005.1 1639502 D 761193 CDS YP_004655006.1 338210957 10869969 1642104..1643594 1 NC_015703.1 PFAM: GH3 auxin-responsive promoter; InterPro IPR008258; KEGG: dfe:Dfer_3070 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase-like, catalytic; SPTR: Lytic transglycosylase catalytic; GH3 auxin-responsive promoter 1643594 10869969 Runsl_1448 Runella slithyformis DSM 19594 GH3 auxin-responsive promoter YP_004655006.1 1642104 D 761193 CDS YP_004655007.1 338210958 10869970 1643937..1644965 1 NC_015703.1 PFAM: Transglycosylase SLT domain; COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: sli:Slin_1870 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YceI family protein; lytic transglycosylase 1644965 10869970 Runsl_1449 Runella slithyformis DSM 19594 lytic transglycosylase YP_004655007.1 1643937 D 761193 CDS YP_004655008.1 338210959 10869971 complement(1645040..1645579) 1 NC_015703.1 PFAM: YceI-like domain; hypothetical protein 1645579 10869971 Runsl_1450 Runella slithyformis DSM 19594 hypothetical protein YP_004655008.1 1645040 R 761193 CDS YP_004655009.1 338210960 10869972 1645597..1645827 1 NC_015703.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_3842 dolichyl-phosphate beta-D-mannosyltransferase; PFAM: Glycosyl transferase, family 2; PRIAM: Dolichyl-phosphate beta-D-mannosyltransferase; SPTR: Dolichyl-phosphate beta-D-mannosyltransferase; hypothetical protein 1645827 10869972 Runsl_1451 Runella slithyformis DSM 19594 hypothetical protein YP_004655009.1 1645597 D 761193 CDS YP_004655010.1 338210961 10869973 complement(1645741..1646529) 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG0407 Uroporphyrinogen-III decarboxylase; HAMAP: Uroporphyrinogen decarboxylase HemE; InterPro IPR006361:IPR000257; KEGG: dfe:Dfer_3425 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); PRIAM: Uroporphyrinogen decarboxylase; SPTR: Uroporphyrinogen decarboxylase; TIGRFAM: Uroporphyrinogen decarboxylase HemE; dolichyl-phosphate beta-D-mannosyltransferase 1646529 10869973 Runsl_1452 Runella slithyformis DSM 19594 dolichyl-phosphate beta-D-mannosyltransferase YP_004655010.1 1645741 R 761193 CDS YP_004655011.1 338210962 10869974 complement(1646951..1647973) 1 NC_015703.1 PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: uroporphyrinogen decarboxylase; COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR001367; KEGG: sli:Slin_2957 iron (metal) dependent repressor, DtxR family; PFAM: Iron dependent repressor; SMART: Iron dependent repressor; SPTR: Iron (Metal) dependent repressor, DtxR family; uroporphyrinogen decarboxylase 1647973 10869974 Runsl_1453 Runella slithyformis DSM 19594 uroporphyrinogen decarboxylase YP_004655011.1 1646951 R 761193 CDS YP_004655012.1 338210963 10869975 complement(1648068..1648721) 1 NC_015703.1 PFAM: FeoA domain; Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain; KEGG: sli:Slin_5143 hypothetical protein; SPTR: uncharacterized protein; DtxR family iron (metal) dependent repressor 1648721 10869975 Runsl_1454 Runella slithyformis DSM 19594 DtxR family iron (metal) dependent repressor YP_004655012.1 1648068 R 761193 CDS YP_004655013.1 338210964 10869976 complement(1648912..1649373) 1 NC_015703.1 KEGG: sli:Slin_5142 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1649373 10869976 Runsl_1455 Runella slithyformis DSM 19594 hypothetical protein YP_004655013.1 1648912 R 761193 CDS YP_004655014.1 338210965 10869977 complement(1649387..1649659) 1 NC_015703.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_5141 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein 1649659 10869977 Runsl_1456 Runella slithyformis DSM 19594 hypothetical protein YP_004655014.1 1649387 R 761193 CDS YP_004655015.1 338210966 10869978 complement(1649742..1650275) 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1914 Mn2+ and Fe2+ transporter of the NRAMP family; HAMAP: Manganese transport protein mntH; InterPro IPR001046; KEGG: dfe:Dfer_4677 Mn2+/Fe2+ transporter, NRAMP family; PFAM: Natural resistance-associated macrophage protein; SPTR: Mn2+/Fe2+ transporter, NRAMP family; TIGRFAM: Natural resistance-associated macrophage protein; ECF subfamily RNA polymerase sigma-24 subunit 1650275 10869978 Runsl_1457 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004655015.1 1649742 R 761193 CDS YP_004655016.1 338210967 10869979 1650461..1651786 1 NC_015703.1 PFAM: Natural resistance-associated macrophage protein; TIGRFAM: NRAMP (natural resistance-associated macrophage protein) metal ion transporters; KEGG: dfe:Dfer_5355 hypothetical protein; SPTR: uncharacterized protein; Manganese transport protein mntH 1651786 10869979 Runsl_1458 Runella slithyformis DSM 19594 Manganese transport protein mntH YP_004655016.1 1650461 D 761193 CDS YP_004655017.1 338210968 10869980 complement(1651859..1653010) 1 NC_015703.1 PFAM: Domain of Unknown Function (DUF748); KEGG: sli:Slin_5618 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1653010 10869980 Runsl_1459 Runella slithyformis DSM 19594 hypothetical protein YP_004655017.1 1651859 R 761193 CDS YP_004655018.1 338210969 10869981 complement(1653085..1658067) 1 NC_015703.1 KEGG: aas:Aasi_0589 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1658067 10869981 Runsl_1460 Runella slithyformis DSM 19594 hypothetical protein YP_004655018.1 1653085 R 761193 CDS YP_004655019.1 338210970 10869982 1658222..1659505 1 NC_015703.1 PFAM: Protein of unknown function (DUF2851); COGs: COG2234 aminopeptidase; InterPro IPR003137:IPR007484; KEGG: dfe:Dfer_4110 peptidase M28; PFAM: Peptidase M28; Protease-associated PA; SPTR: Peptidase M28; hypothetical protein 1659505 10869982 Runsl_1461 Runella slithyformis DSM 19594 hypothetical protein YP_004655019.1 1658222 D 761193 CDS YP_004655020.1 338210971 10869983 1659592..1661061 1 NC_015703.1 PFAM: PA domain; Peptidase M28; KEGG: apj:APJL_1764 hypothetical protein; SPTR: uncharacterized protein; peptidase M28 1661061 10869983 Runsl_1462 Runella slithyformis DSM 19594 peptidase M28 YP_004655020.1 1659592 D 761193 CDS YP_004655021.1 338210972 10869984 1661305..1662615 1 NC_015703.1 SPTR: uncharacterized protein; hypothetical protein 1662615 10869984 Runsl_1463 Runella slithyformis DSM 19594 hypothetical protein YP_004655021.1 1661305 D 761193 CDS YP_004655022.1 338210973 10869985 1662621..1663169 1 NC_015703.1 COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated; hypothetical protein 1663169 10869985 Runsl_1464 Runella slithyformis DSM 19594 hypothetical protein YP_004655022.1 1662621 D 761193 CDS YP_004655023.1 338210974 10869986 join(1663218..1663682,1663684..1664229) 1 NC_015703.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; COGs: COG2373 Large extracellular alpha-helical protein; InterPro IPR002890:IPR011625; KEGG: dfe:Dfer_3542 alpha-2-macroglobulin domain protein; PFAM: Alpha-2-macroglobulin, N-terminal; Alpha-2-macroglobulin, N-terminal 2; SPTR: Alpha-2-macroglobulin domain protein; transposase 1664229 10869986 Runsl_1465 Runella slithyformis DSM 19594 transposase YP_004655023.1 1663218 D 761193 CDS YP_004655024.1 338210975 10869987 complement(1664274..1669838) 1 NC_015703.1 PFAM: Alpha-macro-globulin thiol-ester bond-forming region; MG2 domain; Alpha-2-macroglobulin family; Alpha-2-macroglobulin MG1 domain; Alpha-2-macroglobulin family N-terminal region; manually curated; alpha-2-macroglobulin 1669838 10869987 Runsl_1466 Runella slithyformis DSM 19594 alpha-2-macroglobulin YP_004655024.1 1664274 R 761193 CDS YP_004655025.1 338210976 10869989 complement(1670364..1671989) 1 NC_015703.1 PFAM: ABC transporter; ABC transporter 1671989 10869989 Runsl_1468 Runella slithyformis DSM 19594 ABC transporter YP_004655025.1 1670364 R 761193 CDS YP_004655026.1 338210977 10869990 1672298..1672582 1 NC_015703.1 InterPro IPR004843; KEGG: fjo:Fjoh_0747 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; hypothetical protein 1672582 10869990 Runsl_1469 Runella slithyformis DSM 19594 hypothetical protein YP_004655026.1 1672298 D 761193 CDS YP_004655027.1 338210978 10869991 1672763..1673491 1 NC_015703.1 PFAM: Calcineurin-like phosphoesterase; COGs: COG1381 Recombinational DNA repair protein (RecF pathway); HAMAP: DNA repair protein recO; InterPro IPR003717; KEGG: dfe:Dfer_4044 DNA repair protein RecO; PFAM: Recombination protein O, RecO; SPTR: DNA repair protein recO; TIGRFAM: Recombination protein O, RecO; metallophosphoesterase 1673491 10869991 Runsl_1470 Runella slithyformis DSM 19594 metallophosphoesterase YP_004655027.1 1672763 D 761193 CDS YP_004655028.1 338210979 10869992 complement(1673557..1674252) 1 NC_015703.1 PFAM: Recombination protein O C terminal; Recombination protein O N terminal; TIGRFAM: DNA repair protein RecO; COGs: COG0548 Acetylglutamate kinase; InterPro IPR004662:IPR001048; KEGG: dfe:Dfer_4174 acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase; PRIAM: Acetylglutamate kinase; SPTR: Acetylglutamate kinase; TIGRFAM: Acetylglutamate kinase; DNA repair protein recO 1674252 10869992 Runsl_1471 Runella slithyformis DSM 19594 DNA repair protein recO YP_004655028.1 1673557 R 761193 CDS YP_004655029.1 338210980 10869993 1674298..1675107 1 NC_015703.1 PFAM: Amino acid kinase; TIGRFAM: acetylglutamate kinase; COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006175; KEGG: lby:Lbys_3494 endoribonuclease L-psp; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP; acetylglutamate kinase 1675107 10869993 Runsl_1472 Runella slithyformis DSM 19594 acetylglutamate kinase YP_004655029.1 1674298 D 761193 CDS YP_004655030.1 338210981 10869994 1675165..1675626 1 NC_015703.1 PFAM: Endoribonuclease L-PSP; KEGG: sli:Slin_6621 hypothetical protein; SPTR: uncharacterized protein; endoribonuclease L-PSP 1675626 10869994 Runsl_1473 Runella slithyformis DSM 19594 endoribonuclease L-PSP YP_004655030.1 1675165 D 761193 CDS YP_004655031.1 338210982 10869995 complement(1675739..1683340) 1 NC_015703.1 COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); InterPro IPR002695:IPR011607:IPR013982; KEGG: dfe:Dfer_3074 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, formylation region; MGS-like; PRIAM: Phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme, formylation region; SPTR: IMP cyclohydrolase; TIGRFAM: AICARFT/IMPCHase bienzyme; hypothetical protein 1683340 10869995 Runsl_1474 Runella slithyformis DSM 19594 hypothetical protein YP_004655031.1 1675739 R 761193 CDS YP_004655032.1 338210983 10869996 complement(1683568..1685136) 1 NC_015703.1 PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; InterPro IPR011701; KEGG: gfo:GFO_2207 hypothetical protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily transporter; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1685136 10869996 Runsl_1475 Runella slithyformis DSM 19594 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_004655032.1 1683568 R 761193 CDS YP_004655033.1 338210984 10869997 complement(1685297..1686451) 1 NC_015703.1 PFAM: Major Facilitator Superfamily; KEGG: psn:Pedsa_2060 hypothetical protein; SPTR: uncharacterized protein; major facilitator superfamily protein 1686451 10869997 Runsl_1476 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004655033.1 1685297 R 761193 CDS YP_004655034.1 338210985 10869998 1686574..1687395 1 NC_015703.1 PFAM: Prolyl oligopeptidase; KEGG: fjo:Fjoh_2886 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1687395 10869998 Runsl_1477 Runella slithyformis DSM 19594 hypothetical protein YP_004655034.1 1686574 D 761193 CDS YP_004655035.1 338210986 10869999 1687412..1688251 1 NC_015703.1 KEGG: fjo:Fjoh_2065 hypothetical protein; SPTR: Transposase; hypothetical protein 1688251 10869999 Runsl_1478 Runella slithyformis DSM 19594 hypothetical protein YP_004655035.1 1687412 D 761193 CDS YP_004655036.1 338210987 10870000 1688556..1689098 1 NC_015703.1 PFAM: Transposase IS200 like; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR005931:IPR015590; KEGG: dfe:Dfer_3807 delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase; PRIAM: 1-pyrroline-5-carboxylate dehydrogenase; SPTR: 1-pyrroline-5-carboxylate dehydrogenase; TIGRFAM: Delta-1-pyrroline-5-carboxylate dehydrogenase 1; hypothetical protein 1689098 10870000 Runsl_1479 Runella slithyformis DSM 19594 hypothetical protein YP_004655036.1 1688556 D 761193 CDS YP_004655037.1 338210988 10870001 complement(1689314..1690945) 1 NC_015703.1 PFAM: Aldehyde dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase, group 1; COGs: COG1505 Serine protease of the peptidase S9A; InterPro IPR004106:IPR001375; KEGG: dfe:Dfer_4608 prolyl oligopeptidase; PFAM: Peptidase S9A, oligopeptidase, N-terminal beta-propeller; Peptidase S9, prolyl oligopeptidase, catalytic domain; PRIAM: Prolyl oligopeptidase; SPTR: Prolyl oligopeptidase; delta-1-pyrroline-5-carboxylate dehydrogenase 1690945 10870001 Runsl_1480 Runella slithyformis DSM 19594 delta-1-pyrroline-5-carboxylate dehydrogenase YP_004655037.1 1689314 R 761193 CDS YP_004655038.1 338210989 10870002 complement(1691019..1693121) 1 NC_015703.1 PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase; KEGG: dfe:Dfer_3562 hypothetical protein; SPTR: uncharacterized protein; prolyl oligopeptidase 1693121 10870002 Runsl_1481 Runella slithyformis DSM 19594 prolyl oligopeptidase YP_004655038.1 1691019 R 761193 CDS YP_004655039.1 338210990 10870003 complement(1693355..1693810) 1 NC_015703.1 KEGG: reh:H16_A1246 hypothetical protein; SPTR: uncharacterized protein h16_A1246; hypothetical protein 1693810 10870003 Runsl_1482 Runella slithyformis DSM 19594 hypothetical protein YP_004655039.1 1693355 R 761193 CDS YP_004655040.1 338210991 10870004 complement(1694027..1694482) 1 NC_015703.1 COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076; KEGG: sli:Slin_0454 glucose-methanol-choline oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; hypothetical protein 1694482 10870004 Runsl_1483 Runella slithyformis DSM 19594 hypothetical protein YP_004655040.1 1694027 R 761193 CDS YP_004655041.1 338210992 10870005 complement(1694517..1696229) 1 NC_015703.1 PFAM: GMC oxidoreductase; COGs: COG4783 Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: sli:Slin_0980 peptidase M48 Ste24p; PFAM: Peptidase M48, Ste24p; SPTR: Peptidase M48 Ste24p; FAD dependent oxidoreductase 1696229 10870005 Runsl_1484 Runella slithyformis DSM 19594 FAD dependent oxidoreductase YP_004655041.1 1694517 R 761193 CDS YP_004655042.1 338210993 10870006 1696425..1697285 1 NC_015703.1 PFAM: Peptidase M48; COGs: COG0824 thioesterase; KEGG: geo:Geob_1205 thioesterase superfamily protein; SPTR: Thioesterase superfamily; peptidase M48 Ste24p 1697285 10870006 Runsl_1485 Runella slithyformis DSM 19594 peptidase M48 Ste24p YP_004655042.1 1696425 D 761193 CDS YP_004655043.1 338210994 10870007 complement(1697362..1697793) 1 NC_015703.1 PFAM: Acyl-ACP thioesterase; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family; COGs: COG1714 membrane protein/domain; InterPro IPR010432; KEGG: sli:Slin_4958 RDD domain containing protein; PFAM: RDD; SPTR: RDD domain containing protein; thioesterase 1697793 10870007 Runsl_1486 Runella slithyformis DSM 19594 thioesterase YP_004655043.1 1697362 R 761193 CDS YP_004655044.1 338210995 10870008 complement(1697805..1698515) 1 NC_015703.1 PFAM: RDD family; COGs: COG1300 membrane protein; InterPro IPR002798; KEGG: sli:Slin_4959 hypothetical protein; PFAM: Protein of unknown function DUF95, transmembrane; SPTR: uncharacterized protein; RDD domain-containing protein 1698515 10870008 Runsl_1487 Runella slithyformis DSM 19594 RDD domain-containing protein YP_004655044.1 1697805 R 761193 CDS YP_004655045.1 338210996 10870009 1698626..1699573 1 NC_015703.1 PFAM: Integral membrane protein DUF95; KEGG: sli:Slin_4960 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1699573 10870009 Runsl_1488 Runella slithyformis DSM 19594 hypothetical protein YP_004655045.1 1698626 D 761193 CDS YP_004655046.1 338210997 10870010 1699609..1700496 1 NC_015703.1 COGs: COG3275 regulator of cell autolysis; InterPro IPR001646:IPR010559:IPR003594; KEGG: sli:Slin_3593 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; Pentapeptide repeat; ATP-binding region, ATPase-like; SPTR: Signal transduction histidine kinase, LytS; hypothetical protein 1700496 10870010 Runsl_1489 Runella slithyformis DSM 19594 hypothetical protein YP_004655046.1 1699609 D 761193 CDS YP_004655049.1 338210998 10870013 complement(1703009..1704295) 1 NC_015703.1 PFAM: Serine hydroxymethyltransferase; COGs: COG0164 Ribonuclease HII; InterPro IPR001352; KEGG: sli:Slin_6108 ribonuclease H; PFAM: Ribonuclease HII/HIII; PRIAM: Ribonuclease H; SPTR: Ribonuclease HII; glycine hydroxymethyltransferase 1704295 10870013 Runsl_1492 Runella slithyformis DSM 19594 glycine hydroxymethyltransferase YP_004655049.1 1703009 R 761193 CDS YP_004655050.1 338210999 10870014 complement(1704401..1704976) 1 NC_015703.1 PFAM: Ribonuclease HII; COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715; KEGG: phe:Phep_3890 polysaccharide export system outer membrane protein; PFAM: Polysaccharide export protein; SPTR: Polysaccharide export system outer membrane protein; ribonuclease H 1704976 10870014 Runsl_1493 Runella slithyformis DSM 19594 ribonuclease H YP_004655050.1 1704401 R 761193 CDS YP_004655051.1 338211000 10870015 1705139..1705927 1 NC_015703.1 PFAM: Polysaccharide biosynthesis/export protein; COGs: COG4464 Capsular polysaccharide biosynthesis protein; KEGG: psn:Pedsa_3849 PHP domain protein; SPTR: PHP domain protein; polysaccharide export protein 1705927 10870015 Runsl_1494 Runella slithyformis DSM 19594 polysaccharide export protein YP_004655051.1 1705139 D 761193 CDS YP_004655052.1 338211001 10870016 1705933..1706679 1 NC_015703.1 COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR005702:IPR003856; KEGG: phe:Phep_3891 capsular exopolysaccharide family; PFAM: Lipopolysaccharide biosynthesis; PRIAM: Non-specific protein-tyrosine kinase; SPTR: Capsular exopolysaccharide family; TIGRFAM: Exopolysaccharide synthesis protein; PHP domain-containing protein 1706679 10870016 Runsl_1495 Runella slithyformis DSM 19594 PHP domain-containing protein YP_004655052.1 1705933 D 761193 CDS YP_004655053.1 338211002 10870017 1706700..1709150 1 NC_015703.1 PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family; capsular exopolysaccharide family protein 1709150 10870017 Runsl_1496 Runella slithyformis DSM 19594 capsular exopolysaccharide family protein YP_004655053.1 1706700 D 761193 CDS YP_004655054.1 338211003 10870018 complement(1709306..1709473) 1 NC_015703.1 InterPro IPR013105:IPR001440:IPR019734; KEGG: sli:Slin_5634 hypothetical protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide TPR_2 repeat protein; hypothetical protein 1709473 10870018 Runsl_1497 Runella slithyformis DSM 19594 hypothetical protein YP_004655054.1 1709306 R 761193 CDS YP_004655055.1 338211004 10870019 1709611..1710306 1 NC_015703.1 PFAM: Tetratricopeptide repeat; COGs: COG0524 Sugar kinase ribokinase; InterPro IPR011611; KEGG: dfe:Dfer_3908 PfkB domain protein; PFAM: Carbohydrate/purine kinase; SPTR: PfkB domain protein; hypothetical protein 1710306 10870019 Runsl_1498 Runella slithyformis DSM 19594 hypothetical protein YP_004655055.1 1709611 D 761193 CDS YP_004655056.1 338211005 10870020 1710408..1711322 1 NC_015703.1 PFAM: pfkB family carbohydrate kinase; KEGG: amr:AM1_0502 hypothetical protein; SPTR: Membrane protein; PfkB domain-containing protein 1711322 10870020 Runsl_1499 Runella slithyformis DSM 19594 PfkB domain-containing protein YP_004655056.1 1710408 D 761193 CDS YP_004655057.1 338211006 10870021 1711409..1712254 1 NC_015703.1 PFAM: CAAX amino terminal protease; COGs: COG0113 Delta-aminolevulinic acid dehydratase; InterPro IPR001731; KEGG: dfe:Dfer_3652 delta-aminolevulinic acid dehydratase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase; PRIAM: Porphobilinogen synthase; SPTR: Delta-aminolevulinic acid dehydratase; hypothetical protein 1712254 10870021 Runsl_1500 Runella slithyformis DSM 19594 hypothetical protein YP_004655057.1 1711409 D 761193 CDS YP_004655058.1 338211007 10870022 1712285..1713265 1 NC_015703.1 PFAM: Delta-aminolevulinic acid dehydratase; InterPro IPR000782; KEGG: sli:Slin_4432 beta-Ig-H3/fasciclin; PFAM: FAS1 domain; SMART: FAS1 domain; SPTR: Beta-Ig-H3/fasciclin; porphobilinogen synthase 1713265 10870022 Runsl_1501 Runella slithyformis DSM 19594 porphobilinogen synthase YP_004655058.1 1712285 D 761193 CDS YP_004655059.1 338211008 10870023 1713431..1714327 1 NC_015703.1 PFAM: Fasciclin domain; KEGG: sli:Slin_0698 hypothetical protein; SPTR: uncharacterized protein; beta-Ig-H3/fasciclin 1714327 10870023 Runsl_1502 Runella slithyformis DSM 19594 beta-Ig-H3/fasciclin YP_004655059.1 1713431 D 761193 CDS YP_004655060.1 338211009 10870024 1714389..1714889 1 NC_015703.1 COGs: COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC; InterPro IPR011815:IPR001264:IPR001460:IPR009647; KEGG: dfe:Dfer_3903 penicillin-binding protein 1C; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; Penicillin-binding, C-terminal; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Penicillin-binding protein 1C; TIGRFAM: Penicillin-binding protein 1C; hypothetical protein 1714889 10870024 Runsl_1503 Runella slithyformis DSM 19594 hypothetical protein YP_004655060.1 1714389 D 761193 CDS YP_004655061.1 338211010 10870025 complement(1714895..1717216) 1 NC_015703.1 PFAM: Penicillin-Binding Protein C-terminus Family; Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein 1C; KEGG: dfe:Dfer_3254 hypothetical protein; SPTR: uncharacterized protein; penicillin-binding protein 1C 1717216 10870025 Runsl_1504 Runella slithyformis DSM 19594 penicillin-binding protein 1C YP_004655061.1 1714895 R 761193 CDS YP_004655062.1 338211011 10870026 complement(1717260..1717562) 1 NC_015703.1 COGs: COG2865 transcriptional regulator protein; InterPro IPR007421; KEGG: sli:Slin_5703 transcriptional regulator; PFAM: ATPase associated with various cellular activities, AAA-4; SPTR: transcriptional regulator; hypothetical protein 1717562 10870026 Runsl_1505 Runella slithyformis DSM 19594 hypothetical protein YP_004655062.1 1717260 R 761193 CDS YP_004655063.1 338211012 10870027 1717607..1718434 1 NC_015703.1 PFAM: Divergent AAA domain; transcriptional regulator 1718434 10870027 Runsl_1506 Runella slithyformis DSM 19594 transcriptional regulator YP_004655063.1 1717607 D 761193 CDS YP_004655064.1 338211013 10870028 complement(1718484..1718639) 1 NC_015703.1 COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: cpi:Cpin_3674 amino acid permease-associated region; PFAM: Amino acid permease-associated region; SPTR: Amino acid permease-associated region; hypothetical protein 1718639 10870028 Runsl_1507 Runella slithyformis DSM 19594 hypothetical protein YP_004655064.1 1718484 R 761193 CDS YP_004655065.1 338211014 10870029 complement(1718641..1720293) 1 NC_015703.1 PFAM: Amino acid permease; COGs: COG3222 conserved hypothetical protein; InterPro IPR018641; KEGG: gfo:GFO_3609 hypothetical protein; PFAM: Protein of unknown function DUF2064; SPTR: uncharacterized protein; amino acid permease 1720293 10870029 Runsl_1508 Runella slithyformis DSM 19594 amino acid permease YP_004655065.1 1718641 R 761193 CDS YP_004655066.1 338211015 10870030 complement(1720377..1721015) 1 NC_015703.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2064); KEGG: mtt:Ftrac_0149 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1721015 10870030 Runsl_1509 Runella slithyformis DSM 19594 hypothetical protein YP_004655066.1 1720377 R 761193 CDS YP_004655067.1 338211016 10870031 1721094..1723046 1 NC_015703.1 InterPro IPR007730; KEGG: sli:Slin_5154 sporulation domain protein; PFAM: Sporulation/cell division region, bacteria; SPTR: Sporulation domain protein; hypothetical protein 1723046 10870031 Runsl_1510 Runella slithyformis DSM 19594 hypothetical protein YP_004655067.1 1721094 D 761193 CDS YP_004655068.1 338211017 10870032 1723144..1723680 1 NC_015703.1 PFAM: Sporulation related domain; COGs: COG1089 GDP-D-mannose dehydratase; InterPro IPR006368:IPR001509; KEGG: dfe:Dfer_3954 GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: GDP-mannose 4,6-dehydratase; SPTR: GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; sporulation domain-containing protein 1723680 10870032 Runsl_1511 Runella slithyformis DSM 19594 sporulation domain-containing protein YP_004655068.1 1723144 D 761193 CDS YP_004655069.1 338211018 10870033 1723715..1724830 1 NC_015703.1 PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; COGs: COG0566 rRNA methylase; InterPro IPR004441:IPR013123:IPR001537; KEGG: dfe:Dfer_2661 RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SPTR: RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase TrmH, group 3; GDP-mannose 4,6-dehydratase 1724830 10870033 Runsl_1512 Runella slithyformis DSM 19594 GDP-mannose 4,6-dehydratase YP_004655069.1 1723715 D 761193 CDS YP_004655070.1 338211019 10870034 complement(1724907..1725701) 1 NC_015703.1 PFAM: SpoU rRNA Methylase; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, , group 3; InterPro IPR013216; KEGG: ttr:Tter_2164 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; TrmH family RNA methyltransferase 1725701 10870034 Runsl_1513 Runella slithyformis DSM 19594 TrmH family RNA methyltransferase YP_004655070.1 1724907 R 761193 CDS YP_004655071.1 338211020 10870035 complement(1725703..1726743) 1 NC_015703.1 PFAM: O-methyltransferase; COGs: COG0211 Ribosomal protein L27; HAMAP: Ribosomal protein L27; InterPro IPR001684; KEGG: lby:Lbys_0882 lsu ribosomal protein l27p; PFAM: Ribosomal protein L27; SPTR: 50S ribosomal protein L27; TIGRFAM: Ribosomal protein L27; type 11 methyltransferase 1726743 10870035 Runsl_1514 Runella slithyformis DSM 19594 type 11 methyltransferase YP_004655071.1 1725703 R 761193 CDS YP_004655072.1 338211021 10870036 complement(1726845..1727114) 1 NC_015703.1 PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; COGs: COG0261 Ribosomal protein L21; HAMAP: Ribosomal protein L21; InterPro IPR001787; KEGG: dfe:Dfer_4884 ribosomal protein L21; PFAM: Ribosomal protein L21; SPTR: 50S ribosomal protein L21; TIGRFAM: Ribosomal protein L21; 50S ribosomal protein L27 1727114 10870036 Runsl_1515 Runella slithyformis DSM 19594 50S ribosomal protein L27 YP_004655072.1 1726845 R 761193 CDS YP_004655073.1 338211022 10870037 complement(1727158..1727469) 1 NC_015703.1 PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21; COGs: COG0266 Formamidopyrimidine-DNA glycosylase; InterPro IPR012319:IPR015886; KEGG: sli:Slin_5592 DNA-formamidopyrimidine glycosylase; PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; PRIAM: DNA-formamidopyrimidine glycosylase; SPTR: Formamidopyrimidine-DNA glycosylase; 50S ribosomal protein L21 1727469 10870037 Runsl_1516 Runella slithyformis DSM 19594 50S ribosomal protein L21 YP_004655073.1 1727158 R 761193 CDS YP_004655074.1 338211023 10870038 complement(1727586..1728401) 1 NC_015703.1 PFAM: Formamidopyrimidine-DNA glycosylase H2TH domain; Formamidopyrimidine-DNA glycosylase N-terminal domain; TIGRFAM: formamidopyrimidine-DNA glycosylase (fpg); COGs: COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; HAMAP: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; InterPro IPR003837; KEGG: sli:Slin_5449 glutamyl-tRNA(Gln) amidotransferase subunit C; PFAM: Glu-tRNAGln amidotransferase, C subunit; SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; DNA-formamidopyrimidine glycosylase 1728401 10870038 Runsl_1517 Runella slithyformis DSM 19594 DNA-formamidopyrimidine glycosylase YP_004655074.1 1727586 R 761193 CDS YP_004655075.1 338211024 10870039 complement(1728499..1728786) 1 NC_015703.1 PFAM: Glu-tRNAGln amidotransferase C subunit; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit; KEGG: sli:Slin_5879 hypothetical protein; SPTR: uncharacterized protein; aspartyl/glutamyl-tRNA amidotransferase subunit C 1728786 10870039 Runsl_1518 Runella slithyformis DSM 19594 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_004655075.1 1728499 R 761193 CDS YP_004655076.1 338211025 10870040 1729017..1730483 1 NC_015703.1 KEGG: dfe:Dfer_4548 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1730483 10870040 Runsl_1519 Runella slithyformis DSM 19594 hypothetical protein YP_004655076.1 1729017 D 761193 CDS YP_004655077.1 338211026 10870041 1730521..1732362 1 NC_015703.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_5177 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; hypothetical protein 1732362 10870041 Runsl_1520 Runella slithyformis DSM 19594 hypothetical protein YP_004655077.1 1730521 D 761193 CDS YP_004655078.1 338211027 10870042 complement(1732371..1733114) 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_3837 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; family 2 glycosyl transferase 1733114 10870042 Runsl_1521 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004655078.1 1732371 R 761193 CDS YP_004655079.1 338211028 10870043 complement(1733198..1734013) 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_5180 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; family 2 glycosyl transferase 1734013 10870043 Runsl_1522 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004655079.1 1733198 R 761193 CDS YP_004655080.1 338211029 10870044 complement(1734010..1734981) 1 NC_015703.1 PFAM: Glycosyl transferase 2; InterPro IPR008775; KEGG: dfe:Dfer_3838 phytanoyl-CoA dioxygenase; PFAM: Phytanoyl-CoA dioxygenase; SPTR: Phytanoyl-CoA dioxygenase; family 2 glycosyl transferase 1734981 10870044 Runsl_1523 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004655080.1 1734010 R 761193 CDS YP_004655081.1 338211030 10870045 complement(1734978..1735880) 1 NC_015703.1 PFAM: Phytanoyl-CoA dioxygenase (PhyH); KEGG: dfe:Dfer_3839 hypothetical protein; SPTR: uncharacterized protein; phytanoyl-CoA dioxygenase 1735880 10870045 Runsl_1524 Runella slithyformis DSM 19594 phytanoyl-CoA dioxygenase YP_004655081.1 1734978 R 761193 CDS YP_004655082.1 338211031 10870046 complement(1735924..1736859) 1 NC_015703.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dfe:Dfer_3840 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; hypothetical protein 1736859 10870046 Runsl_1525 Runella slithyformis DSM 19594 hypothetical protein YP_004655082.1 1735924 R 761193 CDS YP_004655083.1 338211032 10870047 complement(1736947..1737828) 1 NC_015703.1 PFAM: ubiE/COQ5 methyltransferase; KEGG: dfe:Dfer_3528 hypothetical protein; SPTR: uncharacterized protein; type 11 methyltransferase 1737828 10870047 Runsl_1526 Runella slithyformis DSM 19594 type 11 methyltransferase YP_004655083.1 1736947 R 761193 CDS YP_004655084.1 338211033 10870048 complement(1737909..1739513) 1 NC_015703.1 InterPro IPR001173; KEGG: dfe:Dfer_3529 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; hypothetical protein 1739513 10870048 Runsl_1527 Runella slithyformis DSM 19594 hypothetical protein YP_004655084.1 1737909 R 761193 CDS YP_004655085.1 338211034 10870049 complement(1739551..1740492) 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_3530 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; family 2 glycosyl transferase 1740492 10870049 Runsl_1528 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004655085.1 1739551 R 761193 CDS YP_004655086.1 338211035 10870050 complement(1740603..1741676) 1 NC_015703.1 PFAM: NAD dependent epimerase/dehydratase; COGs: COG5002 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: sli:Slin_5610 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase; NAD-dependent epimerase/dehydratase 1741676 10870050 Runsl_1529 Runella slithyformis DSM 19594 NAD-dependent epimerase/dehydratase YP_004655086.1 1740603 R 761193 CDS YP_004655087.1 338211036 10870051 complement(1741837..1742871) 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; HAMAP: Ribosomal protein L33; InterPro IPR001705; KEGG: dfe:Dfer_3609 ribosomal protein L33; PFAM: Ribosomal protein L33; SPTR: 50S ribosomal protein L33; TIGRFAM: Ribosomal protein L33; integral membrane sensor signal transduction histidine kinase 1742871 10870051 Runsl_1530 Runella slithyformis DSM 19594 integral membrane sensor signal transduction histidine kinase YP_004655087.1 1741837 R 761193 CDS YP_004655088.1 338211037 10870052 1742996..1743178 1 NC_015703.1 PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; KEGG: dfe:Dfer_3608 hypothetical protein; SPTR: uncharacterized protein; 50S ribosomal protein L33 1743178 10870052 Runsl_1531 Runella slithyformis DSM 19594 50S ribosomal protein L33 YP_004655088.1 1742996 D 761193 CDS YP_004655089.1 338211038 10870053 1743263..1743415 1 NC_015703.1 COGs: COG0552 Signal recognition particle GTPase; InterPro IPR004390:IPR013822:IPR000897:IPR003593; KEGG: dfe:Dfer_3607 signal recognition particle-docking protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; SMART: ATPase, AAA+ type, core; SPTR: Signal recognition particle-docking protein FtsY; TIGRFAM: Cell division transporter substrate-binding protein FtsY; hypothetical protein 1743415 10870053 Runsl_1532 Runella slithyformis DSM 19594 hypothetical protein YP_004655089.1 1743263 D 761193 CDS YP_004655090.1 338211039 10870054 1743530..1744558 1 NC_015703.1 PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY; signal recognition particle-docking protein FtsY 1744558 10870054 Runsl_1533 Runella slithyformis DSM 19594 signal recognition particle-docking protein FtsY YP_004655090.1 1743530 D 761193 CDS YP_004655091.1 338211040 10870055 complement(1744624..1745799) 1 NC_015703.1 InterPro IPR010869:IPR006311; KEGG: sli:Slin_5933 hypothetical protein; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein; hypothetical protein 1745799 10870055 Runsl_1534 Runella slithyformis DSM 19594 hypothetical protein YP_004655091.1 1744624 R 761193 CDS YP_004655092.1 338211041 10870056 complement(1745936..1747420) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1501); COGs: COG2852 conserved hypothetical protein; InterPro IPR007569; KEGG: tra:Trad_2714 hypothetical protein; PFAM: Protein of unknown function DUF559; SPTR: uncharacterized protein; hypothetical protein 1747420 10870056 Runsl_1535 Runella slithyformis DSM 19594 hypothetical protein YP_004655092.1 1745936 R 761193 CDS YP_004655093.1 338211042 10870057 complement(1747441..1747854) 1 NC_015703.1 PFAM: Protein of unknown function (DUF559); InterPro IPR011429:IPR011444; KEGG: dfe:Dfer_1334 protein of unknown function DUF1549; PFAM: Protein of unknown function DUF1549; Cytochrome C, Planctomycete; SPTR: uncharacterized protein; hypothetical protein 1747854 10870057 Runsl_1536 Runella slithyformis DSM 19594 hypothetical protein YP_004655093.1 1747441 R 761193 CDS YP_004655094.1 338211043 10870058 complement(1747955..1751245) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553); KEGG: sli:Slin_1721 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1751245 10870058 Runsl_1537 Runella slithyformis DSM 19594 hypothetical protein YP_004655094.1 1747955 R 761193 CDS YP_004655095.1 338211044 10870059 complement(1751492..1752718) 1 NC_015703.1 KEGG: sli:Slin_1722 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1752718 10870059 Runsl_1538 Runella slithyformis DSM 19594 hypothetical protein YP_004655095.1 1751492 R 761193 CDS YP_004655096.1 338211045 10870060 complement(1752705..1754096) 1 NC_015703.1 PFAM: Protein of unknown function (DUF3500); COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: cpi:Cpin_2661 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; hypothetical protein 1754096 10870060 Runsl_1539 Runella slithyformis DSM 19594 hypothetical protein YP_004655096.1 1752705 R 761193 CDS YP_004655097.1 338211046 10870061 complement(1754216..1754974) 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: bfs:BF3660 hypothetical protein; PFAM: Signal transduction histidine kinase, internal region; SPTR: membrane protein; LytTR family two component transcriptional regulator 1754974 10870061 Runsl_1540 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004655097.1 1754216 R 761193 CDS YP_004655098.1 338211047 10870062 complement(1755013..1755972) 1 NC_015703.1 PFAM: Histidine kinase; signal transduction histidine kinase 1755972 10870062 Runsl_1541 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004655098.1 1755013 R 761193 CDS YP_004655099.1 338211048 10870063 complement(1756091..1756453) 1 NC_015703.1 COGs: COG2828 conserved hypothetical protein; InterPro IPR007400; KEGG: sli:Slin_4025 hypothetical protein; PFAM: PrpF protein; SPTR: uncharacterized protein; manually curated; hypothetical protein 1756453 10870063 Runsl_1542 Runella slithyformis DSM 19594 hypothetical protein YP_004655099.1 1756091 R 761193 CDS YP_004655100.1 338211049 10870064 complement(1756573..1757685) 1 NC_015703.1 PFAM: PrpF protein; COGs: COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase; InterPro IPR006115:IPR015814; KEGG: sli:Slin_4024 6-phosphogluconate dehydrogenase NAD-binding protein; PFAM: Phosphogluconate dehydrogenase, NAD-binding, , C-terminal; 6-phosphogluconate dehydrogenase, NAD-binding; SPTR: 6-phosphogluconate dehydrogenase NAD-binding protein; PrpF protein 1757685 10870064 Runsl_1543 Runella slithyformis DSM 19594 PrpF protein YP_004655100.1 1756573 R 761193 CDS YP_004655101.1 338211050 10870065 complement(1757686..1758465) 1 NC_015703.1 PFAM: Domain of unknown function (DUF1932); NAD binding domain of 6-phosphogluconate dehydrogenase; COGs: COG0684 Demethylmenaquinone methyltransferase; InterPro IPR005493; KEGG: sli:Slin_4023 dimethylmenaquinone methyltransferase; PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; SPTR: Dimethylmenaquinone methyltransferase; phosphogluconate dehydrogenase, NAD-binding protein 1758465 10870065 Runsl_1544 Runella slithyformis DSM 19594 phosphogluconate dehydrogenase, NAD-binding protein YP_004655101.1 1757686 R 761193 CDS YP_004655102.1 338211051 10870066 complement(1758478..1759098) 1 NC_015703.1 PFAM: Demethylmenaquinone methyltransferase; COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: sli:Slin_4022 LmbE family protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR: LmbE family protein; dimethylmenaquinone methyltransferase 1759098 10870066 Runsl_1545 Runella slithyformis DSM 19594 dimethylmenaquinone methyltransferase YP_004655102.1 1758478 R 761193 CDS YP_004655103.1 338211052 10870067 complement(1759103..1759816) 1 NC_015703.1 PFAM: GlcNAc-PI de-N-acetylase; InterPro IPR012657; KEGG: fjo:Fjoh_0085 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02436; LmbE family protein 1759816 10870067 Runsl_1546 Runella slithyformis DSM 19594 LmbE family protein YP_004655103.1 1759103 R 761193 CDS YP_004655104.1 338211053 10870068 complement(1759830..1760285) 1 NC_015703.1 PFAM: S23 ribosomal protein; TIGRFAM: TIGR02436 family protein; InterPro IPR004360; KEGG: sli:Slin_4021 catechol 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; PRIAM: Biphenyl-2,3-diol 1,2-dioxygenase; SPTR: Catechol 2,3-dioxygenase; hypothetical protein 1760285 10870068 Runsl_1547 Runella slithyformis DSM 19594 hypothetical protein YP_004655104.1 1759830 R 761193 CDS YP_004655105.1 338211054 10870069 complement(1760351..1761307) 1 NC_015703.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: catechol 2,3 dioxygenase; KEGG: nla:NLA_20040 hypothetical protein; SPTR: Alpha/beta superfamily hydrolase; biphenyl 2,3-dioxygenase 1761307 10870069 Runsl_1548 Runella slithyformis DSM 19594 biphenyl 2,3-dioxygenase YP_004655105.1 1760351 R 761193 CDS YP_004655106.1 338211055 10870070 complement(1761400..1762848) 1 NC_015703.1 PFAM: alpha/beta hydrolase fold; KEGG: sli:Slin_3122 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1762848 10870070 Runsl_1549 Runella slithyformis DSM 19594 hypothetical protein YP_004655106.1 1761400 R 761193 CDS YP_004655107.1 338211056 10870071 complement(1762944..1764113) 1 NC_015703.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: sli:Slin_4019 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; hypothetical protein 1764113 10870071 Runsl_1550 Runella slithyformis DSM 19594 hypothetical protein YP_004655107.1 1762944 R 761193 CDS YP_004655108.1 338211057 10870072 1764229..1765107 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism; InterPro IPR013987:IPR013988:IPR004624; KEGG: lby:Lbys_2347 alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein, C-terminal; PhnA protein, N-terminal; SPTR: Alkylphosphonate utilization operon protein PhnA; TIGRFAM: PhnA protein; AraC family transcriptional regulator 1765107 10870072 Runsl_1551 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004655108.1 1764229 D 761193 CDS YP_004655109.1 338211058 10870073 1765174..1765527 1 NC_015703.1 PFAM: PhnA protein; PhnA Zinc-Ribbon; TIGRFAM: alkylphosphonate utilization operon protein PhnA; COGs: COG4099 peptidase; InterPro IPR003140; KEGG: rbi:RB2501_02810 glucan-binding protein D; BglB-like protein; PFAM: Phospholipase/carboxylesterase; SPTR: glucan-binding protein D; BglB-like protein; alkylphosphonate utilization protein PhnA 1765527 10870073 Runsl_1552 Runella slithyformis DSM 19594 alkylphosphonate utilization protein PhnA YP_004655109.1 1765174 D 761193 CDS YP_004655110.1 338211059 10870074 1765712..1767034 1 NC_015703.1 PFAM: Phospholipase/Carboxylesterase; COGs: COG0288 Carbonic anhydrase; InterPro IPR001765; KEGG: cao:Celal_1252 carbonate dehydratase; PFAM: Carbonic anhydrase; PRIAM: Carbonate dehydratase; SPTR: Carbonic anhydrase; phospholipase/carboxylesterase 1767034 10870074 Runsl_1553 Runella slithyformis DSM 19594 phospholipase/carboxylesterase YP_004655110.1 1765712 D 761193 CDS YP_004655111.1 338211060 10870075 complement(1767153..1767782) 1 NC_015703.1 PFAM: Carbonic anhydrase; KEGG: dfe:Dfer_3073 hypothetical protein; SPTR: uncharacterized protein; carbonate dehydratase 1767782 10870075 Runsl_1554 Runella slithyformis DSM 19594 carbonate dehydratase YP_004655111.1 1767153 R 761193 CDS YP_004655112.1 338211061 10870076 complement(1767811..1768608) 1 NC_015703.1 COGs: COG0349 Ribonuclease D; InterPro IPR002562; KEGG: sfu:Sfum_0414 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease; SPTR: 3'-5' exonuclease; manually curated; hypothetical protein 1768608 10870076 Runsl_1555 Runella slithyformis DSM 19594 hypothetical protein YP_004655112.1 1767811 R 761193 CDS YP_004655113.1 338211062 10870077 complement(1768781..1769932) 1 NC_015703.1 PFAM: 3'-5' exonuclease; TIGRFAM: ribonuclease D; COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR004176:IPR003959:IPR013093:IPR019489:IPR 003593:IPR017730; KEGG: dfe:Dfer_2969 ATP-dependent chaperone ClpB; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent chaperone ClpB; TIGRFAM: Chaperonin ClpB; 3'-5' exonuclease 1769932 10870077 Runsl_1556 Runella slithyformis DSM 19594 3'-5' exonuclease YP_004655113.1 1768781 R 761193 CDS YP_004655114.1 338211063 10870078 1770091..1772718 1 NC_015703.1 PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB; InterPro IPR008538; KEGG: sli:Slin_4968 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; ATP-dependent chaperone ClpB 1772718 10870078 Runsl_1557 Runella slithyformis DSM 19594 ATP-dependent chaperone ClpB YP_004655114.1 1770091 D 761193 CDS YP_004655115.1 338211064 10870079 complement(1772787..1773434) 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); KEGG: tva:TVAG_073360 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1773434 10870079 Runsl_1558 Runella slithyformis DSM 19594 hypothetical protein YP_004655115.1 1772787 R 761193 CDS YP_004655116.1 338211065 10870080 complement(1773537..1774061) 1 NC_015703.1 PFAM: PBCV-specific basic adaptor domain; KEGG: sli:Slin_6276 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1774061 10870080 Runsl_1559 Runella slithyformis DSM 19594 hypothetical protein YP_004655116.1 1773537 R 761193 CDS YP_004655117.1 338211066 10870081 1774211..1775392 1 NC_015703.1 PFAM: FG-GAP repeat; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sli:Slin_2585 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; hypothetical protein 1775392 10870081 Runsl_1560 Runella slithyformis DSM 19594 hypothetical protein YP_004655117.1 1774211 D 761193 CDS YP_004655118.1 338211067 10870082 complement(1775428..1776567) 1 NC_015703.1 PFAM: Glycosyl transferases group 1; KEGG: dfe:Dfer_0255 hypothetical protein; SPTR: uncharacterized protein; group 1 glycosyl transferase 1776567 10870082 Runsl_1561 Runella slithyformis DSM 19594 group 1 glycosyl transferase YP_004655118.1 1775428 R 761193 CDS YP_004655119.1 338211068 10870083 complement(1776545..1777549) 1 NC_015703.1 KEGG: dfe:Dfer_2782 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1777549 10870083 Runsl_1562 Runella slithyformis DSM 19594 hypothetical protein YP_004655119.1 1776545 R 761193 CDS YP_004655120.1 338211069 10870084 complement(1777546..1778853) 1 NC_015703.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_3959 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; hypothetical protein 1778853 10870084 Runsl_1563 Runella slithyformis DSM 19594 hypothetical protein YP_004655120.1 1777546 R 761193 CDS YP_004655121.1 338211070 10870085 complement(1778865..1779581) 1 NC_015703.1 PFAM: Glycosyl transferase 2; InterPro IPR001296; KEGG: lby:Lbys_1846 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; family 2 glycosyl transferase 1779581 10870085 Runsl_1564 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004655121.1 1778865 R 761193 CDS YP_004655122.1 338211071 10870086 complement(1779963..1781168) 1 NC_015703.1 PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sli:Slin_2582 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; group 1 glycosyl transferase 1781168 10870086 Runsl_1565 Runella slithyformis DSM 19594 group 1 glycosyl transferase YP_004655122.1 1779963 R 761193 CDS YP_004655123.1 338211072 10870087 complement(1781165..1782280) 1 NC_015703.1 PFAM: Glycosyl transferases group 1; KEGG: lby:Lbys_3142 glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1; group 1 glycosyl transferase 1782280 10870087 Runsl_1566 Runella slithyformis DSM 19594 group 1 glycosyl transferase YP_004655123.1 1781165 R 761193 CDS YP_004655124.1 338211073 10870088 complement(1782362..1783306) 1 NC_015703.1 KEGG: dfe:Dfer_2778 glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1; glycosyl transferase family protein 1783306 10870088 Runsl_1567 Runella slithyformis DSM 19594 glycosyl transferase family protein YP_004655124.1 1782362 R 761193 CDS YP_004655125.1 338211074 10870089 complement(1783288..1784259) 1 NC_015703.1 KEGG: dfe:Dfer_4231 hypothetical protein; SPTR: uncharacterized protein; glycosyl transferase family protein 1784259 10870089 Runsl_1568 Runella slithyformis DSM 19594 glycosyl transferase family protein YP_004655125.1 1783288 R 761193 CDS YP_004655126.1 338211075 10870090 complement(1784256..1786343) 1 NC_015703.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dfe:Dfer_2777 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; hypothetical protein 1786343 10870090 Runsl_1569 Runella slithyformis DSM 19594 hypothetical protein YP_004655126.1 1784256 R 761193 CDS YP_004655127.1 338211076 10870091 complement(1786307..1787518) 1 NC_015703.1 PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dfe:Dfer_3551 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; group 1 glycosyl transferase 1787518 10870091 Runsl_1570 Runella slithyformis DSM 19594 group 1 glycosyl transferase YP_004655127.1 1786307 R 761193 CDS YP_004655128.1 338211077 10870092 complement(1787518..1788621) 1 NC_015703.1 PFAM: Glycosyl transferases group 1; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: dfe:Dfer_3552 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; group 1 glycosyl transferase 1788621 10870092 Runsl_1571 Runella slithyformis DSM 19594 group 1 glycosyl transferase YP_004655128.1 1787518 R 761193 CDS YP_004655129.1 338211078 10870093 complement(1788625..1789617) 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG1043 Acyl-(acyl carrier protein); InterPro IPR001451; KEGG: dfe:Dfer_2776 acyl-(acyl carrier protein)-like protein; SPTR: Acyl-(Acyl carrier protein)-like protein; family 2 glycosyl transferase 1789617 10870093 Runsl_1572 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004655129.1 1788625 R 761193 CDS YP_004655130.1 338211079 10870094 complement(1789706..1790359) 1 NC_015703.1 PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; InterPro IPR014985; KEGG: sli:Slin_2574 WbqC-like family protein; PFAM: WbqC-like protein family; SPTR: WbqC-like family protein; acyl carrier protein 1790359 10870094 Runsl_1573 Runella slithyformis DSM 19594 acyl carrier protein YP_004655130.1 1789706 R 761193 CDS YP_004655131.1 338211080 10870095 complement(1790448..1791146) 1 NC_015703.1 PFAM: WbqC-like protein family; KEGG: sli:Slin_2573 hypothetical protein; SPTR: uncharacterized protein; WbqC-like family protein 1791146 10870095 Runsl_1574 Runella slithyformis DSM 19594 WbqC-like family protein YP_004655131.1 1790448 R 761193 CDS YP_004655132.1 338211081 10870096 complement(1791238..1793319) 1 NC_015703.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: dfe:Dfer_2773 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase; hypothetical protein 1793319 10870096 Runsl_1575 Runella slithyformis DSM 19594 hypothetical protein YP_004655132.1 1791238 R 761193 CDS YP_004655133.1 338211082 10870097 complement(1793322..1794395) 1 NC_015703.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_2772 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Teichoic-acid-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; DegT/DnrJ/EryC1/StrS aminotransferase 1794395 10870097 Runsl_1576 Runella slithyformis DSM 19594 DegT/DnrJ/EryC1/StrS aminotransferase YP_004655133.1 1793322 R 761193 CDS YP_004655134.1 338211083 10870098 complement(1794417..1795667) 1 NC_015703.1 PFAM: ABC transporter; COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525; KEGG: sli:Slin_2570 ABC transporter; PFAM: ABC-2 type transporter; SPTR: ABC-2 type transporter; teichoic-acid-transporting AtPase 1795667 10870098 Runsl_1577 Runella slithyformis DSM 19594 teichoic-acid-transporting AtPase YP_004655134.1 1794417 R 761193 CDS YP_004655135.1 338211084 10870099 complement(1795703..1796545) 1 NC_015703.1 PFAM: ABC-2 type transporter; KEGG: dfe:Dfer_2770 hypothetical protein; SPTR: uncharacterized protein; ABC transporter 1796545 10870099 Runsl_1578 Runella slithyformis DSM 19594 ABC transporter YP_004655135.1 1795703 R 761193 CDS YP_004655136.1 338211085 10870100 complement(1796594..1797670) 1 NC_015703.1 COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715:IPR019554; KEGG: sli:Slin_2568 ligand-binding protein; PFAM: Polysaccharide export protein; Soluble ligand binding domain; SPTR: Soluble ligand binding domain protein; hypothetical protein 1797670 10870100 Runsl_1579 Runella slithyformis DSM 19594 hypothetical protein YP_004655136.1 1796594 R 761193 CDS YP_004655137.1 338211086 10870101 complement(1797716..1800217) 1 NC_015703.1 PFAM: Polysaccharide biosynthesis/export protein; SLBB domain; COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterPro IPR003594:IPR013506:IPR001241; KEGG: sli:Slin_2567 DNA topoisomerase type II subunit alpha B region 2 domain protein; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like; SPTR: DNA topoisomerase type IIA subunit B region 2 domain protein; polysaccharide export protein 1800217 10870101 Runsl_1580 Runella slithyformis DSM 19594 polysaccharide export protein YP_004655137.1 1797716 R 761193 CDS YP_004655138.1 338211087 10870102 1800655..1802553 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; SPTR: Transposase IS4 family protein; DNA topoisomerase type IIA subunit B domain-containing protein 1802553 10870102 Runsl_1581 Runella slithyformis DSM 19594 DNA topoisomerase type IIA subunit B domain-containing protein YP_004655138.1 1800655 D 761193 CDS YP_004655139.1 338211088 10870103 complement(1802576..1803922) 1 NC_015703.1 COGs: COG3225 ABC-type uncharacterized transport system involved in gliding motility auxiliary component; InterPro IPR019196:IPR019863; KEGG: dfe:Dfer_3719 gliding motility protein, ABC-related protein; PFAM: ABC-type uncharacterised transport system; SPTR: Gliding motility protein, ABC-related protein; TIGRFAM: Gliding-associated ABC transporter substrate-binding GldG; hypothetical protein 1803922 10870103 Runsl_1582 Runella slithyformis DSM 19594 hypothetical protein YP_004655139.1 1802576 R 761193 CDS YP_004655140.1 338211089 10870104 complement(1804015..1805646) 1 NC_015703.1 PFAM: ABC-type uncharacterized transport system; TIGRFAM: gliding-associated ABC transporter substrate-binding component GldG; COGs: COG3169 conserved hypothetical protein; InterPro IPR007437; KEGG: nde:NIDE0571 hypothetical protein; PFAM: Protein of unknown function DUF486; SPTR: uncharacterized protein; gliding-associated ABC transporter substrate-binding protein GldG 1805646 10870104 Runsl_1583 Runella slithyformis DSM 19594 gliding-associated ABC transporter substrate-binding protein GldG YP_004655140.1 1804015 R 761193 CDS YP_004655141.1 338211090 10870105 complement(1805706..1806035) 1 NC_015703.1 PFAM: Protein of unknown function, DUF486; COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; InterPro IPR006148:IPR003737:IPR018322; KEGG: dfe:Dfer_3813 glucosamine-6-phosphate deaminase-like protein; PFAM: Glucosamine/galactosamine-6-phosphate isomerase; N-acetylglucosaminyl phosphatidylinositol deacetylase; PRIAM: Glucosamine-6-phosphate deaminase; SPTR: Glucosamine-6-phosphate isomerase; TIGRFAM: Glucosamine-6-phosphate isomerase, subgroup; hypothetical protein 1806035 10870105 Runsl_1584 Runella slithyformis DSM 19594 hypothetical protein YP_004655141.1 1805706 R 761193 CDS YP_004655142.1 338211091 10870106 complement(1806139..1808067) 1 NC_015703.1 PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; GlcNAc-PI de-N-acetylase; TIGRFAM: glucosamine-6-phosphate isomerase; COGs: COG3142 Uncharacterized protein involved in copper resistance; HAMAP: Copper homeostasis protein cutC; InterPro IPR005627; KEGG: sli:Slin_5700 CutC family protein; PFAM: CutC; SPTR: Copper homeostasis protein CutC; glucosamine-6-phosphate isomerase 1808067 10870106 Runsl_1585 Runella slithyformis DSM 19594 glucosamine-6-phosphate isomerase YP_004655142.1 1806139 R 761193 CDS YP_004655143.1 338211092 10870107 complement(1808176..1808913) 1 NC_015703.1 PFAM: CutC family; COGs: COG5267 conserved hypothetical protein; InterPro IPR014917; KEGG: sli:Slin_1188 hypothetical protein; PFAM: Protein of unknown function DUF1800; SPTR: uncharacterized protein; Copper homeostasis protein cutC 1808913 10870107 Runsl_1586 Runella slithyformis DSM 19594 Copper homeostasis protein cutC YP_004655143.1 1808176 R 761193 CDS YP_004655144.1 338211093 10870108 1809137..1810519 1 NC_015703.1 PFAM: Protein of unknown function (DUF1800); COGs: COG4102 conserved hypothetical protein; InterPro IPR010869; KEGG: sli:Slin_1189 hypothetical protein; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein; hypothetical protein 1810519 10870108 Runsl_1587 Runella slithyformis DSM 19594 hypothetical protein YP_004655144.1 1809137 D 761193 CDS YP_004655145.1 338211094 10870109 1810544..1812091 1 NC_015703.1 PFAM: Protein of unknown function (DUF1501); KEGG: dfe:Dfer_3784 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1812091 10870109 Runsl_1588 Runella slithyformis DSM 19594 hypothetical protein YP_004655145.1 1810544 D 761193 CDS YP_004655146.1 338211095 10870110 1812140..1813252 1 NC_015703.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_4568 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; hypothetical protein 1813252 10870110 Runsl_1589 Runella slithyformis DSM 19594 hypothetical protein YP_004655146.1 1812140 D 761193 CDS YP_004655147.1 338211096 10870111 1813305..1815608 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TonB-dependent receptor 1815608 10870111 Runsl_1590 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004655147.1 1813305 D 761193 CDS YP_004655148.1 338211097 10870112 1815622..1815714 1 NC_015703.1 COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); HAMAP: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; InterPro IPR003699; KEGG: sli:Slin_1175 S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: Queuosine biosynthesis protein; hypothetical protein 1815714 10870112 Runsl_1591 Runella slithyformis DSM 19594 hypothetical protein YP_004655148.1 1815622 D 761193 CDS YP_004655149.1 338211098 10870113 1815788..1816831 1 NC_015703.1 PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; HAMAP: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro IPR001228; KEGG: sli:Slin_1174 4-diphosphocytidyl-2C-methyl-D-erythritolsynthase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; S-adenosylmethionine:tRNAribosyltransferase- isomerase 1816831 10870113 Runsl_1592 Runella slithyformis DSM 19594 S-adenosylmethionine:tRNAribosyltransferase- isomerase YP_004655149.1 1815788 D 761193 CDS YP_004655150.1 338211099 10870114 1816919..1817599 1 NC_015703.1 PFAM: Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; COGs: COG1703 periplasmic protein kinase ArgK and related GTPase of G3E family; InterPro IPR005129; KEGG: sli:Slin_1173 LAO/AO transporter ATPase; PFAM: ArgK protein; SPTR: LAO/AO transport system ATPase; TIGRFAM: ArgK protein; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1817599 10870114 Runsl_1593 Runella slithyformis DSM 19594 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_004655150.1 1816919 D 761193 CDS YP_004655151.1 338211100 10870115 1817681..1818664 1 NC_015703.1 PFAM: ArgK protein; TIGRFAM: LAO/AO transport system ATPase; LAO/AO transport system ATPase 1818664 10870115 Runsl_1594 Runella slithyformis DSM 19594 LAO/AO transport system ATPase YP_004655151.1 1817681 D 761193 CDS YP_004655152.1 338211101 10870116 complement(1818667..1819575) 1 NC_015703.1 KEGG: sli:Slin_5064 hypothetical protein; SPTR: Conserved repeat domain protein; hypothetical protein 1819575 10870116 Runsl_1595 Runella slithyformis DSM 19594 hypothetical protein YP_004655152.1 1818667 R 761193 CDS YP_004655153.1 338211102 10870117 complement(1819736..1823164) 1 NC_015703.1 PFAM: Pregnancy-associated plasma protein-A; hypothetical protein 1823164 10870117 Runsl_1596 Runella slithyformis DSM 19594 hypothetical protein YP_004655153.1 1819736 R 761193 CDS YP_004655154.1 338211103 10870118 complement(1823222..1823341) 1 NC_015703.1 COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); HAMAP: Monofunctional biosynthetic peptidoglycan transglycosylase; InterPro IPR001264:IPR011812; KEGG: dfe:Dfer_2412 monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: Glycosyl transferase, family 51; SPTR: Monofunctional biosynthetic peptidoglycan transglycosylase; TIGRFAM: Monofunctional biosynthetic peptidoglycan transglycosylase; manually curated; hypothetical protein 1823341 10870118 Runsl_1597 Runella slithyformis DSM 19594 hypothetical protein YP_004655154.1 1823222 R 761193 CDS YP_004655155.1 338211104 10870119 complement(1823418..1824173) 1 NC_015703.1 PFAM: Transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR007197:IPR010723:IPR006638:IPR004559; KEGG: sli:Slin_2843 oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM; HemN, C-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: Oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; monofunctional biosynthetic peptidoglycan transglycosylase 1824173 10870119 Runsl_1598 Runella slithyformis DSM 19594 monofunctional biosynthetic peptidoglycan transglycosylase YP_004655155.1 1823418 R 761193 CDS YP_004655156.1 338211105 10870120 complement(1824268..1825422) 1 NC_015703.1 PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: sli:Slin_0393 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; oxygen-independent coproporphyrinogen III oxidase 1825422 10870120 Runsl_1599 Runella slithyformis DSM 19594 oxygen-independent coproporphyrinogen III oxidase YP_004655156.1 1824268 R 761193 CDS YP_004655157.1 338211106 10870121 complement(1825450..1826160) 1 NC_015703.1 PFAM: OmpA family; KEGG: cly:Celly_1381 hypothetical protein; SPTR: uncharacterized protein; OmpA/MotB domain-containing protein 1826160 10870121 Runsl_1600 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004655157.1 1825450 R 761193 CDS YP_004655158.1 338211107 10870122 complement(1826247..1826927) 1 NC_015703.1 KEGG: cly:Celly_1381 hypothetical protein; SPTR: Membrane protein; hypothetical protein 1826927 10870122 Runsl_1601 Runella slithyformis DSM 19594 hypothetical protein YP_004655158.1 1826247 R 761193 CDS YP_004655159.1 338211108 10870123 complement(1826929..1827591) 1 NC_015703.1 COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: cly:Celly_1377 PadR-like family transcriptional regulator; PFAM: Transcriptional regulator PadR N-terminal-like; SPTR: uncharacterized protein; hypothetical protein 1827591 10870123 Runsl_1602 Runella slithyformis DSM 19594 hypothetical protein YP_004655159.1 1826929 R 761193 CDS YP_004655160.1 338211109 10870124 complement(1827591..1827929) 1 NC_015703.1 PFAM: Transcriptional regulator PadR-like family; KEGG: sli:Slin_6392 hypothetical protein; SPTR: uncharacterized protein; PadR-like family transcriptional regulator 1827929 10870124 Runsl_1603 Runella slithyformis DSM 19594 PadR-like family transcriptional regulator YP_004655160.1 1827591 R 761193 CDS YP_004655161.1 338211110 10870125 complement(1827987..1828169) 1 NC_015703.1 COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: dfe:Dfer_3657 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: Band 7 protein; hypothetical protein 1828169 10870125 Runsl_1604 Runella slithyformis DSM 19594 hypothetical protein YP_004655161.1 1827987 R 761193 CDS YP_004655162.1 338211111 10870126 complement(1828265..1829119) 1 NC_015703.1 PFAM: SPFH domain / Band 7 family; COGs: COG1190 Lysyl-tRNA synthetase (class II); HAMAP: Lysyl-tRNA synthetase; InterPro IPR004365:IPR004364:IPR002313; KEGG: dfe:Dfer_4009 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: Lysine--tRNA ligase; SPTR: Lysyl-tRNA synthetase; TIGRFAM: Lysyl-tRNA synthetase, class II; hypothetical protein 1829119 10870126 Runsl_1605 Runella slithyformis DSM 19594 hypothetical protein YP_004655162.1 1828265 R 761193 CDS YP_004655163.1 338211112 10870127 1829330..1831084 1 NC_015703.1 PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial; COGs: COG1018 Flavodoxin reductase (ferredoxin-NADPH reductase) family 1; InterPro IPR008333:IPR001433:IPR001041; KEGG: cpi:Cpin_0377 ferredoxin; PFAM: Ferredoxin; Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region; PRIAM: Nitric oxide dioxygenase; SPTR: Ferredoxin; lysyl-tRNA synthetase 1831084 10870127 Runsl_1606 Runella slithyformis DSM 19594 lysyl-tRNA synthetase YP_004655163.1 1829330 D 761193 CDS YP_004655164.1 338211113 10870128 1831132..1832169 1 NC_015703.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR000192; KEGG: sli:Slin_1497 cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Cysteine desulfurase; SPTR: Cysteine desulfurase; nitric oxide dioxygenase 1832169 10870128 Runsl_1607 Runella slithyformis DSM 19594 nitric oxide dioxygenase YP_004655164.1 1831132 D 761193 CDS YP_004655165.1 338211114 10870129 complement(1832166..1833326) 1 NC_015703.1 PFAM: Aminotransferase class-V; COGs: COG0429 hydrolase of the alpha/beta-hydrolase fold; InterPro IPR000073; KEGG: sli:Slin_5174 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; cysteine desulfurase 1833326 10870129 Runsl_1608 Runella slithyformis DSM 19594 cysteine desulfurase YP_004655165.1 1832166 R 761193 CDS YP_004655166.1 338211115 10870130 1833525..1834484 1 NC_015703.1 PFAM: alpha/beta hydrolase fold; KEGG: scl:sce2233 hypothetical protein; SPTR: uncharacterized protein; alpha/beta hydrolase 1834484 10870130 Runsl_1609 Runella slithyformis DSM 19594 alpha/beta hydrolase YP_004655166.1 1833525 D 761193 CDS YP_004655167.1 338211116 10870131 complement(1834523..1834780) 1 NC_015703.1 COGs: COG0431 flavoprotein; InterPro IPR005025; KEGG: mtt:Ftrac_3110 nadph-dependent fmn reductase; PFAM: NADPH-dependent FMN reductase; SPTR: NADPH-dependent FMN reductase; hypothetical protein 1834780 10870131 Runsl_1610 Runella slithyformis DSM 19594 hypothetical protein YP_004655167.1 1834523 R 761193 CDS YP_004655168.1 338211117 10870132 complement(1834823..1835347) 1 NC_015703.1 PFAM: NADPH-dependent FMN reductase; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: dfe:Dfer_3666 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; NADPH-dependent FMN reductase 1835347 10870132 Runsl_1611 Runella slithyformis DSM 19594 NADPH-dependent FMN reductase YP_004655168.1 1834823 R 761193 CDS YP_004655169.1 338211118 10870133 1835655..1836185 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; InterPro IPR018764; KEGG: dfe:Dfer_3665 hypothetical protein; PFAM: Anti-sigma K factor RskA; SPTR: uncharacterized protein; ECF subfamily RNA polymerase sigma-24 subunit 1836185 10870133 Runsl_1612 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004655169.1 1835655 D 761193 CDS YP_004655170.1 338211119 10870134 1836204..1837775 1 NC_015703.1 PFAM: Anti-sigma-K factor rskA; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR008030; KEGG: lby:Lbys_0127 NmrA family protein; SPTR: NmrA family protein; anti-sigma-K factor RskA 1837775 10870134 Runsl_1613 Runella slithyformis DSM 19594 anti-sigma-K factor RskA YP_004655170.1 1836204 D 761193 CDS YP_004655171.1 338211120 10870135 complement(1837803..1838660) 1 NC_015703.1 PFAM: NmrA-like family; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: psn:Pedsa_1651 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; manually curated; NmrA family protein 1838660 10870135 Runsl_1614 Runella slithyformis DSM 19594 NmrA family protein YP_004655171.1 1837803 R 761193 CDS YP_004655172.1 338211121 10870136 complement(1838749..1839324) 1 NC_015703.1 PFAM: Cyclic nucleotide-binding domain; COGs: COG0348 Polyferredoxin; InterPro IPR001450; KEGG: mtt:Ftrac_3598 hypothetical protein; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: 4Fe-4S binding domain protein; Crp/Fnr family transcriptional regulator 1839324 10870136 Runsl_1615 Runella slithyformis DSM 19594 Crp/Fnr family transcriptional regulator YP_004655172.1 1838749 R 761193 CDS YP_004655173.1 338211122 10870137 complement(1839329..1840867) 1 NC_015703.1 COGs: COG0355 F0F1-type ATP synthase epsilon subunit (mitochondrial delta subunit); InterPro IPR020546; KEGG: dfe:Dfer_3764 H+transporting two-sector ATPase delta/epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; SPTR: H+transporting two-sector ATPase delta/epsilon subunit; 4Fe-4S ferredoxin 1840867 10870137 Runsl_1616 Runella slithyformis DSM 19594 4Fe-4S ferredoxin YP_004655173.1 1839329 R 761193 CDS YP_004655174.1 338211123 10870138 complement(1840983..1841222) 1 NC_015703.1 PFAM: ATP synthase, Delta/Epsilon chain, beta-sandwich domain; TIGRFAM: ATP synthase, F1 epsilon subunit (delta in mitochondria); COGs: COG0055 F0F1-type ATP synthase beta subunit; HAMAP: ATPase, F1 complex, beta subunit; InterProIPR005722:IPR004100:IPR000194:IPR000793:IPR 003593; KEGG: dfe:Dfer_3763 F0F1 ATP synthase subunit beta; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP synthase subunit beta; TIGRFAM: ATPase, F1 complex, beta subunit; ATPase F1 subunit delta/epsilon subunit 1841222 10870138 Runsl_1617 Runella slithyformis DSM 19594 ATPase F1 subunit delta/epsilon subunit YP_004655174.1 1840983 R 761193 CDS YP_004655175.1 338211124 10870139 complement(1841239..1842759) 1 NC_015703.1 PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATP synthase, F1 beta subunit; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: sli:Slin_3618 histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: Histidine kinase; ATP synthase subunit beta 1842759 10870139 Runsl_1618 Runella slithyformis DSM 19594 ATP synthase subunit beta YP_004655175.1 1841239 R 761193 CDS YP_004655176.1 338211125 10870140 complement(1843226..1844413) 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG0373 Glutamyl-tRNA reductase; HAMAP: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; InterPro IPR000343:IPR015895:IPR006151:IPR015896; KEGG: sli:Slin_3619 glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal; SPTR: Glutamyl-tRNA reductase; TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; integral membrane sensor signal transduction histidine kinase 1844413 10870140 Runsl_1619 Runella slithyformis DSM 19594 integral membrane sensor signal transduction histidine kinase YP_004655176.1 1843226 R 761193 CDS YP_004655177.1 338211126 10870141 1844829..1846100 1 NC_015703.1 PFAM: Glutamyl-tRNAGlu reductase, N-terminal domain; Shikimate / quinate 5-dehydrogenase; Glutamyl-tRNAGlu reductase, dimerisation domain; TIGRFAM: glutamyl-tRNA reductase; COGs: COG3191 L-aminopeptidase/D-esterase; InterPro IPR005321; KEGG: dfe:Dfer_3571 peptidase S58 DmpA; PFAM: Peptidase S58, DmpA; SPTR: Peptidase S58 DmpA; glutamyl-tRNA reductase 1846100 10870141 Runsl_1620 Runella slithyformis DSM 19594 glutamyl-tRNA reductase YP_004655177.1 1844829 D 761193 CDS YP_004655178.1 338211127 10870142 complement(1846109..1847239) 1 NC_015703.1 PFAM: Peptidase S58; KEGG: sli:Slin_4445 hypothetical protein; SPTR: uncharacterized protein; peptidase S58 DmpA 1847239 10870142 Runsl_1621 Runella slithyformis DSM 19594 peptidase S58 DmpA YP_004655178.1 1846109 R 761193 CDS YP_004655179.1 338211128 10870143 1847480..1849060 1 NC_015703.1 InterPro IPR000923; KEGG: sli:Slin_6137 blue (type 1) copper domain protein; PFAM: Blue (type 1) copper domain; SPTR: Blue (Type 1) copper domain protein; hypothetical protein 1849060 10870143 Runsl_1622 Runella slithyformis DSM 19594 hypothetical protein YP_004655179.1 1847480 D 761193 CDS YP_004655180.1 338211129 10870144 complement(1849135..1851150) 1 NC_015703.1 PFAM: Copper binding proteins, plastocyanin/azurin family; COGs: COG0039 Malate/lactate dehydrogenase; HAMAP: Malate dehydrogenase, NAD-dependent; InterPro IPR011275:IPR001236; KEGG: dfe:Dfer_4459 malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; PRIAM: L-lactate dehydrogenase; SPTR: Malate dehydrogenase; TIGRFAM: Malate dehydrogenase, NAD-dependent; blue (type 1) copper domain-containing protein 1851150 10870144 Runsl_1623 Runella slithyformis DSM 19594 blue (type 1) copper domain-containing protein YP_004655180.1 1849135 R 761193 CDS YP_004655181.1 338211130 10870145 complement(1851259..1852188) 1 NC_015703.1 PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase, NAD-dependent; KEGG: sli:Slin_6050 hypothetical protein; SPTR: uncharacterized protein; malate dehydrogenase 1852188 10870145 Runsl_1624 Runella slithyformis DSM 19594 malate dehydrogenase YP_004655181.1 1851259 R 761193 CDS YP_004655182.1 338211131 10870146 1852604..1853233 1 NC_015703.1 COGs: COG0754 Glutathionylspermidine synthase; InterPro IPR005494; KEGG: sli:Slin_5050 glutathionylspermidine synthase; PFAM: Glutathionylspermidine synthase; SPTR: Glutathionylspermidine synthase; hypothetical protein 1853233 10870146 Runsl_1625 Runella slithyformis DSM 19594 hypothetical protein YP_004655182.1 1852604 D 761193 CDS YP_004655183.1 338211132 10870147 1853335..1854507 1 NC_015703.1 PFAM: Glutathionylspermidine synthase; glutathionylspermidine synthase 1854507 10870147 Runsl_1626 Runella slithyformis DSM 19594 glutathionylspermidine synthase YP_004655183.1 1853335 D 761193 CDS YP_004655184.1 338211133 10870148 complement(1854529..1854792) 1 NC_015703.1 hypothetical protein 1854792 10870148 Runsl_1627 Runella slithyformis DSM 19594 hypothetical protein YP_004655184.1 1854529 R 761193 CDS YP_004655185.1 338211134 10870149 complement(1854795..1854971) 1 NC_015703.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: sli:Slin_1838 ABC transporter; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; hypothetical protein 1854971 10870149 Runsl_1628 Runella slithyformis DSM 19594 hypothetical protein YP_004655185.1 1854795 R 761193 CDS YP_004655186.1 338211135 10870150 complement(1855053..1855739) 1 NC_015703.1 PFAM: ABC transporter; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: sli:Slin_1839 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; phosphonate-transporting ATPase 1855739 10870150 Runsl_1629 Runella slithyformis DSM 19594 phosphonate-transporting ATPase YP_004655186.1 1855053 R 761193 CDS YP_004655187.1 338211136 10870151 complement(1855821..1857077) 1 NC_015703.1 PFAM: Predicted permease; hypothetical protein 1857077 10870151 Runsl_1630 Runella slithyformis DSM 19594 hypothetical protein YP_004655187.1 1855821 R 761193 CDS YP_004655188.1 338211137 10870152 complement(1857127..1857540) 1 NC_015703.1 COGs: COG0845 Membrane-fusion protein; KEGG: sli:Slin_1840 efflux transporter RND family, MFP subunit; SPTR: Efflux transporter, RND family, MFP subunit; hypothetical protein 1857540 10870152 Runsl_1631 Runella slithyformis DSM 19594 hypothetical protein YP_004655188.1 1857127 R 761193 CDS YP_004655189.1 338211138 10870153 complement(1857687..1858793) 1 NC_015703.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_1841 hypothetical protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane protein-like protein; RND family efflux transporter MFP subunit 1858793 10870153 Runsl_1632 Runella slithyformis DSM 19594 RND family efflux transporter MFP subunit YP_004655189.1 1857687 R 761193 CDS YP_004655190.1 338211139 10870154 complement(1858826..1860157) 1 NC_015703.1 PFAM: Outer membrane efflux protein; KEGG: sli:Slin_5940 hypothetical protein; SPTR: uncharacterized protein; outer membrane efflux protein 1860157 10870154 Runsl_1633 Runella slithyformis DSM 19594 outer membrane efflux protein YP_004655190.1 1858826 R 761193 CDS YP_004655191.1 338211140 10870155 1860328..1861239 1 NC_015703.1 KEGG: sli:Slin_6770 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1861239 10870155 Runsl_1634 Runella slithyformis DSM 19594 hypothetical protein YP_004655191.1 1860328 D 761193 CDS YP_004655192.1 338211141 10870156 1861297..1861656 1 NC_015703.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: ppn:Palpr_0551 heavy metal efflux pump, czca family; PFAM: Outer membrane efflux protein; SPTR: Cation efflux system protein CzcA; manually curated; hypothetical protein 1861656 10870156 Runsl_1635 Runella slithyformis DSM 19594 hypothetical protein YP_004655192.1 1861297 D 761193 CDS YP_004655193.1 338211142 10870157 1861755..1862957 1 NC_015703.1 PFAM: Outer membrane efflux protein; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: mag:amb1249 membrane-fusion protein; PFAM: Secretion protein HlyD; SPTR: uncharacterized protein; TIGRFAM: Secretion protein HlyD; outer membrane efflux protein 1862957 10870157 Runsl_1636 Runella slithyformis DSM 19594 outer membrane efflux protein YP_004655193.1 1861755 D 761193 CDS YP_004655194.1 338211143 10870158 1862954..1864768 1 NC_015703.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG3696 silver efflux pump; InterPro IPR001036:IPR004763; KEGG: scl:sce8113 cation efflux system protein; PFAM: Acriflavin resistance protein; SPTR: Cation efflux system protein; TIGRFAM: Heavy metal efflux pump CzcA; RND family efflux transporter MFP subunit 1864768 10870158 Runsl_1637 Runella slithyformis DSM 19594 RND family efflux transporter MFP subunit YP_004655194.1 1862954 D 761193 CDS YP_004655195.1 338211144 10870159 1864934..1868089 1 NC_015703.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: psn:Pedsa_0531 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; CzcA family heavy metal efflux pump 1868089 10870159 Runsl_1638 Runella slithyformis DSM 19594 CzcA family heavy metal efflux pump YP_004655195.1 1864934 D 761193 CDS YP_004655196.1 338211145 10870160 1868100..1870517 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; KEGG: sli:Slin_6747 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 1870517 10870160 Runsl_1639 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004655196.1 1868100 D 761193 CDS YP_004655197.1 338211146 10870161 1870539..1871162 1 NC_015703.1 COGs: COG2217 Cation transport ATPase; InterProIPR008250:IPR005834:IPR006404:IPR006416:IPR 001757; KEGG: dfe:Dfer_1187 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; PRIAM: Zinc-exporting ATPase; SPTR: Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; hypothetical protein 1871162 10870161 Runsl_1640 Runella slithyformis DSM 19594 hypothetical protein YP_004655197.1 1870539 D 761193 CDS YP_004655198.1 338211147 10870162 1871175..1873142 1 NC_015703.1 PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; KEGG: mtt:Ftrac_2349 hypothetical protein; SPTR: uncharacterized protein; heavy metal translocating P-type ATPase 1873142 10870162 Runsl_1641 Runella slithyformis DSM 19594 heavy metal translocating P-type ATPase YP_004655198.1 1871175 D 761193 CDS YP_004655199.1 338211148 10870163 1873147..1873566 1 NC_015703.1 PFAM: Domain of unknown function (DU1801); COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_5203 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein; hypothetical protein 1873566 10870163 Runsl_1642 Runella slithyformis DSM 19594 hypothetical protein YP_004655199.1 1873147 D 761193 CDS YP_004655200.1 338211149 10870164 complement(1873619..1875646) 1 NC_015703.1 PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG0306 Phosphate/sulphate permease; InterPro IPR001204; KEGG: sli:Slin_4985 phosphate transporter; PFAM: Phosphate transporter; SPTR: Phosphate transporter; OmpA/MotB domain-containing protein 1875646 10870164 Runsl_1643 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004655200.1 1873619 R 761193 CDS YP_004655201.1 338211150 10870165 complement(1875804..1877222) 1 NC_015703.1 PFAM: Phosphate transporter family; KEGG: dfe:Dfer_4010 hypothetical protein; SPTR: uncharacterized protein; phosphate transporter 1877222 10870165 Runsl_1644 Runella slithyformis DSM 19594 phosphate transporter YP_004655201.1 1875804 R 761193 CDS YP_004655202.1 338211151 10870166 complement(1877395..1879854) 1 NC_015703.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: sli:Slin_4552 aldo/keto reductase; PFAM: Aldo/keto reductase; SPTR: Aldo/keto reductase; hypothetical protein 1879854 10870166 Runsl_1645 Runella slithyformis DSM 19594 hypothetical protein YP_004655202.1 1877395 R 761193 CDS YP_004655203.1 338211152 10870167 1879919..1880890 1 NC_015703.1 PFAM: Aldo/keto reductase; COGs: COG4325 membrane protein; InterPro IPR018723; KEGG: alv:Alvin_1166 hypothetical protein; PFAM: Protein of unknown function DUF2254, membrane; SPTR: uncharacterized protein; aldo/keto reductase 1880890 10870167 Runsl_1646 Runella slithyformis DSM 19594 aldo/keto reductase YP_004655203.1 1879919 D 761193 CDS YP_004655204.1 338211153 10870168 complement(1880941..1882368) 1 NC_015703.1 PFAM: Predicted membrane protein (DUF2254); InterPro IPR000620; KEGG: sli:Slin_5227 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: uncharacterized protein; hypothetical protein 1882368 10870168 Runsl_1647 Runella slithyformis DSM 19594 hypothetical protein YP_004655204.1 1880941 R 761193 CDS YP_004655205.1 338211154 10870169 complement(1882414..1883313) 1 NC_015703.1 PFAM: EamA-like transporter family; COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR002155; KEGG: mtt:Ftrac_1202 acetyl-CoA acetyltransferase; PRIAM: Acetyl-CoA C-acetyltransferase; SPTR: Acetyl-CoA acetyltransferase; TIGRFAM: Thiolase; hypothetical protein 1883313 10870169 Runsl_1648 Runella slithyformis DSM 19594 hypothetical protein YP_004655205.1 1882414 R 761193 CDS YP_004655208.1 338211155 10870172 complement(1885366..1885788) 1 NC_015703.1 PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein 1885788 10870172 Runsl_1651 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004655208.1 1885366 R 761193 CDS YP_004655209.1 338211156 10870173 complement(1885882..1886295) 1 NC_015703.1 KEGG: cpw:CPC735_028320 ankyrin repeat containing protein; SPTR: Ankyrin repeat protein; hypothetical protein 1886295 10870173 Runsl_1652 Runella slithyformis DSM 19594 hypothetical protein YP_004655209.1 1885882 R 761193 CDS YP_004655210.1 338211157 10870174 1886527..1887516 1 NC_015703.1 COGs: COG0284 Orotidine-5'-phosphate decarboxylase; InterPro IPR001754:IPR011995; KEGG: dfe:Dfer_2966 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase, core; PRIAM: Orotidine-5'-phosphate decarboxylase; SPTR: Orotidine 5'-phosphate decarboxylase; TIGRFAM: Orotidine 5'-phosphate decarboxylase, subfamily 2, core; hypothetical protein 1887516 10870174 Runsl_1653 Runella slithyformis DSM 19594 hypothetical protein YP_004655210.1 1886527 D 761193 CDS YP_004655211.1 338211158 10870175 complement(1887544..1888443) 1 NC_015703.1 PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 2; COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: dfe:Dfer_5140 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase; orotidine 5'-phosphate decarboxylase 1888443 10870175 Runsl_1654 Runella slithyformis DSM 19594 orotidine 5'-phosphate decarboxylase YP_004655211.1 1887544 R 761193 CDS YP_004655212.1 338211159 10870176 complement(1888446..1889081) 1 NC_015703.1 PFAM: Phosphoglycerate mutase; COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: dfe:Dfer_5139 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; phosphoglycerate mutase 1889081 10870176 Runsl_1655 Runella slithyformis DSM 19594 phosphoglycerate mutase YP_004655212.1 1888446 R 761193 CDS YP_004655213.1 338211160 10870177 1889104..1889637 1 NC_015703.1 PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1; KEGG: sli:Slin_5813 isoamylase N-terminal domain-containing protein; SPTR: Isoamylase N-terminal domain-containing protein; phenylacetic acid degradation-like protein 1889637 10870177 Runsl_1656 Runella slithyformis DSM 19594 phenylacetic acid degradation-like protein YP_004655213.1 1889104 D 761193 CDS YP_004655214.1 338211161 10870178 complement(1889695..1890006) 1 NC_015703.1 PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); COGs: COG2346 Truncated hemoglobins; InterPro IPR001486; KEGG: mtt:Ftrac_1649 globin; PFAM: Globin, truncated bacterial-like; SPTR: Globin; isoamylase N-terminal domain-containing protein 1890006 10870178 Runsl_1657 Runella slithyformis DSM 19594 isoamylase N-terminal domain-containing protein YP_004655214.1 1889695 R 761193 CDS YP_004655215.1 338211162 10870179 complement(1890173..1890571) 1 NC_015703.1 PFAM: Bacterial-like globin; KEGG: fjo:Fjoh_0927 hypothetical protein; SPTR: uncharacterized protein; globin 1890571 10870179 Runsl_1658 Runella slithyformis DSM 19594 globin YP_004655215.1 1890173 R 761193 CDS YP_004655216.1 338211163 10870180 complement(1890651..1891115) 1 NC_015703.1 PFAM: Protein of unknown function, DUF255; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: lby:Lbys_1558 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; hypothetical protein 1891115 10870180 Runsl_1659 Runella slithyformis DSM 19594 hypothetical protein YP_004655216.1 1890651 R 761193 CDS YP_004655217.1 338211164 10870181 complement(1891112..1893406) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; KEGG: sli:Slin_4560 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 1893406 10870181 Runsl_1660 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004655217.1 1891112 R 761193 CDS YP_004655218.1 338211165 10870182 complement(1893495..1893878) 1 NC_015703.1 KEGG: mxa:MXAN_1582 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1893878 10870182 Runsl_1661 Runella slithyformis DSM 19594 hypothetical protein YP_004655218.1 1893495 R 761193 CDS YP_004655219.1 338211166 10870183 1893996..1894409 1 NC_015703.1 COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR005481:IPR005479:IPR005482; KEGG: sli:Slin_3536 carbamoyl-phosphate synthase L chain ATP-binding protein; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; PRIAM: Pyruvate carboxylase; SPTR: Carbamoyl-phosphate synthase L chain ATP-binding protein; hypothetical protein 1894409 10870183 Runsl_1662 Runella slithyformis DSM 19594 hypothetical protein YP_004655219.1 1893996 D 761193 CDS YP_004655220.1 338211167 10870184 complement(1894475..1895974) 1 NC_015703.1 PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit; Prodigal; manually curated; pyruvate carboxylase 1895974 10870184 Runsl_1663 Runella slithyformis DSM 19594 pyruvate carboxylase YP_004655220.1 1894475 R 761193 CDS YP_004655221.1 338211168 10870186 1896654..1897295 1 NC_015703.1 PFAM: AhpC/TSA family; InterPro IPR001173; KEGG: sli:Slin_5753 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; alkyl hydroperoxide reductase 1897295 10870186 Runsl_1665 Runella slithyformis DSM 19594 alkyl hydroperoxide reductase YP_004655221.1 1896654 D 761193 CDS YP_004655222.1 338211169 10870187 complement(1897359..1898102) 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR006963:IPR006656:IPR006657; KEGG: dmr:Deima_1224 nitrate reductase; PFAM: Molydopterin dinucleotide-binding region; Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; PRIAM: Nitrate reductase; SPTR: Oxidoreductase, molybdopterin-binding; family 2 glycosyl transferase 1898102 10870187 Runsl_1666 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004655222.1 1897359 R 761193 CDS YP_004655223.1 338211170 10870188 complement(1898159..1900276) 1 NC_015703.1 PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; COGs: COG0254 Ribosomal protein L31; HAMAP: 50S ribosomal protein L31 type B; InterPro IPR002150; KEGG: lby:Lbys_1177 lsu ribosomal protein l31p; PFAM: Ribosomal protein L31; SPTR: 50S ribosomal protein L31 type B; TIGRFAM: Ribosomal protein L31; nitrate reductase 1900276 10870188 Runsl_1667 Runella slithyformis DSM 19594 nitrate reductase YP_004655223.1 1898159 R 761193 CDS YP_004655224.1 338211171 10870189 1900506..1900748 1 NC_015703.1 PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31; InterPro IPR001123; KEGG: scl:sce2066 LysE type translocator; PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: LysE type translocator; 50S ribosomal protein L31 1900748 10870189 Runsl_1668 Runella slithyformis DSM 19594 50S ribosomal protein L31 YP_004655224.1 1900506 D 761193 CDS YP_004655225.1 338211172 10870190 complement(1900823..1901452) 1 NC_015703.1 PFAM: LysE type translocator; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_4562 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; lysine exporter protein LysE/YggA 1901452 10870190 Runsl_1669 Runella slithyformis DSM 19594 lysine exporter protein LysE/YggA YP_004655225.1 1900823 R 761193 CDS YP_004655226.1 338211173 10870191 complement(1901482..1902249) 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: sli:Slin_0093 sodium symporter; PFAM: Bile acid:sodium symporter; SPTR: Bile acid:sodium symporter; 3-oxoacyl-ACP reductase 1902249 10870191 Runsl_1670 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004655226.1 1901482 R 761193 CDS YP_004655227.1 338211174 10870192 complement(1902267..1903202) 1 NC_015703.1 PFAM: Sodium Bile acid symporter family; TIGRFAM: bile acid transporter; COGs: COG0505 Carbamoylphosphate synthase small subunit; InterPro IPR002474:IPR000991:IPR006274; KEGG: dfe:Dfer_4372 carbamoyl phosphate synthase small subunit; PFAM: Glutamine amidotransferase class-I, C-terminal; Carbamoyl phosphate synthase, small subunit, N-terminal; PRIAM: Carbamoyl-phosphate synthase (glutamine-hydrolyzing); SPTR: Carbamoyl-phosphate synthase, small subunit; TIGRFAM: Carbamoyl phosphate synthase, small subunit; bile acid:sodium symporter 1903202 10870192 Runsl_1671 Runella slithyformis DSM 19594 bile acid:sodium symporter YP_004655227.1 1902267 R 761193 CDS YP_004655228.1 338211175 10870193 complement(1903478..1904656) 1 NC_015703.1 PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit; COGs: COG0203 Ribosomal protein L17; HAMAP: 50S ribosomal protein L17; InterPro IPR000456; KEGG: dfe:Dfer_4371 ribosomal protein L17; PFAM: Ribosomal protein L17; SPTR: 50S ribosomal protein L17; TIGRFAM: Ribosomal protein L17; carbamoyl-phosphate synthase small subunit 1904656 10870193 Runsl_1672 Runella slithyformis DSM 19594 carbamoyl-phosphate synthase small subunit YP_004655228.1 1903478 R 761193 CDS YP_004655229.1 338211176 10870194 complement(1904761..1905528) 1 NC_015703.1 PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17; COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit; HAMAP: DNA-directed RNA polymerase, alpha subunit; InterProIPR011773:IPR011261:IPR011262:IPR011260:IPR 011263; KEGG: sli:Slin_5760 DNA-directed RNA polymerase, subunit alpha; PFAM: DNA-directed RNA polymerase, insert; DNA-directed RNA polymerase, dimerisation; RNA polymerase, alpha subunit, C-terminal; SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; SPTR: DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; 50S ribosomal protein L17 1905528 10870194 Runsl_1673 Runella slithyformis DSM 19594 50S ribosomal protein L17 YP_004655229.1 1904761 R 761193 CDS YP_004655230.1 338211177 10870195 complement(1905669..1906658) 1 NC_015703.1 PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type; COGs: COG0522 Ribosomal protein S4 and related protein; InterPro IPR001912:IPR002942:IPR005709; KEGG: sli:Slin_5761 ribosomal protein S4; PFAM: Ribosomal protein S4; RNA-binding S4; SMART: RNA-binding S4; SPTR: 30S ribosomal protein S4; TIGRFAM: Ribosomal protein S4, bacterial-type; DNA-directed RNA polymerase subunit alpha 1906658 10870195 Runsl_1674 Runella slithyformis DSM 19594 DNA-directed RNA polymerase subunit alpha YP_004655230.1 1905669 R 761193 CDS YP_004655231.1 338211178 10870196 complement(1906788..1907399) 1 NC_015703.1 PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type; COGs: COG0100 Ribosomal protein S11; InterPro IPR001971:IPR019981; KEGG: dfe:Dfer_4368 30S ribosomal protein S11; PFAM: Ribosomal protein S11; SPTR: 30S ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type; 30S ribosomal protein S4 1907399 10870196 Runsl_1675 Runella slithyformis DSM 19594 30S ribosomal protein S4 YP_004655231.1 1906788 R 761193 CDS YP_004655232.1 338211179 10870197 complement(1907503..1907898) 1 NC_015703.1 PFAM: Ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; COGs: COG0099 Ribosomal protein S13; InterPro IPR001892:IPR019980; KEGG: dfe:Dfer_4367 30S ribosomal protein S13; PFAM: Ribosomal protein S13; SPTR: 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; 30S ribosomal protein S11 1907898 10870197 Runsl_1676 Runella slithyformis DSM 19594 30S ribosomal protein S11 YP_004655232.1 1907503 R 761193 CDS YP_004655233.1 338211180 10870198 complement(1908004..1908381) 1 NC_015703.1 PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13; HAMAP: Ribosomal protein L36; InterPro IPR000473; KEGG: psn:Pedsa_2125 LSU ribosomal protein L36P; PFAM: Ribosomal protein L36; SPTR: 50S ribosomal protein L36; TIGRFAM: Ribosomal protein L36; manually curated; 30S ribosomal protein S13 1908381 10870198 Runsl_1677 Runella slithyformis DSM 19594 30S ribosomal protein S13 YP_004655233.1 1908004 R 761193 CDS YP_004655234.1 338211181 10870199 complement(1908391..1908507) 1 NC_015703.1 PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type; COGs: COG0361 Translation initiation factor 1 (IF-1); HAMAP: Translation initiation factor IF-1; InterPro IPR004368:IPR006196; KEGG: sli:Slin_5765 translation initiation factor IF-1; PFAM: S1, IF1 type; SPTR: Translation initiation factor IF-1; TIGRFAM: Translation initiation factor IF-1; 50S ribosomal protein L36 1908507 10870199 Runsl_1678 Runella slithyformis DSM 19594 50S ribosomal protein L36 YP_004655234.1 1908391 R 761193 CDS YP_004655235.1 338211182 10870200 complement(1908618..1908836) 1 NC_015703.1 PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1; COGs: COG0024 Methionine aminopeptidase; InterPro IPR000994:IPR002467; KEGG: sli:Slin_5766 methionine aminopeptidase, type I; PFAM: Peptidase M24, structural domain; PRIAM: Methionyl aminopeptidase; SPTR: Methionine aminopeptidase; TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; translation initiation factor IF-1 1908836 10870200 Runsl_1679 Runella slithyformis DSM 19594 translation initiation factor IF-1 YP_004655235.1 1908618 R 761193 CDS YP_004655236.1 338211183 10870201 complement(1908859..1909662) 1 NC_015703.1 PFAM: Metallopeptidase M24; TIGRFAM: methionine aminopeptidase, type I; COGs: COG0201 Preprotein translocase subunit SecY; InterPro IPR002208; KEGG: dfe:Dfer_4363 preprotein translocase subunit SecY; PFAM: SecY protein; SPTR: Preprotein translocase, SecY subunit; TIGRFAM: SecY protein; methionine aminopeptidase 1909662 10870201 Runsl_1680 Runella slithyformis DSM 19594 methionine aminopeptidase YP_004655236.1 1908859 R 761193 CDS YP_004655237.1 338211184 10870202 complement(1909662..1910975) 1 NC_015703.1 PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit; COGs: COG0200 Ribosomal protein L15; InterPro IPR001196:IPR005749; KEGG: sli:Slin_5768 ribosomal protein L15; PFAM: Ribosomal protein L15; SPTR: 50S ribosomal protein L15; TIGRFAM: Ribosomal protein L15, bacterial-type; preprotein translocase subunit SecY 1910975 10870202 Runsl_1681 Runella slithyformis DSM 19594 preprotein translocase subunit SecY YP_004655237.1 1909662 R 761193 CDS YP_004655238.1 338211185 10870203 complement(1911036..1911482) 1 NC_015703.1 PFAM: Ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle; COGs: COG1841 Ribosomal protein L30/L7E; InterPro IPR000517:IPR005996; KEGG: dfe:Dfer_4361 ribosomal protein L30; PFAM: Ribosomal protein L30p/L7e, conserved region; SPTR: 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; 50S ribosomal protein L15 1911482 10870203 Runsl_1682 Runella slithyformis DSM 19594 50S ribosomal protein L15 YP_004655238.1 1911036 R 761193 CDS YP_004655239.1 338211186 10870204 complement(1911496..1911675) 1 NC_015703.1 PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle; COGs: COG0098 Ribosomal protein S5; InterPro IPR013810:IPR005324:IPR005712; KEGG: sli:Slin_5770 ribosomal protein S5; PFAM: Ribosomal protein S5, N-terminal; Ribosomal protein S5, C-terminal; SPTR: 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; 50S ribosomal protein L30 1911675 10870204 Runsl_1683 Runella slithyformis DSM 19594 50S ribosomal protein L30 YP_004655239.1 1911496 R 761193 CDS YP_004655240.1 338211187 10870205 complement(1911688..1912203) 1 NC_015703.1 PFAM: Ribosomal protein S5, C-terminal domain; Ribosomal protein S5, N-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type; COGs: COG0256 Ribosomal protein L18; InterPro IPR005484:IPR004389; KEGG: dfe:Dfer_4359 ribosomal protein L18; PFAM: Ribosomal protein L18/L5; SPTR: 50S ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; 30S ribosomal protein S5 1912203 10870205 Runsl_1684 Runella slithyformis DSM 19594 30S ribosomal protein S5 YP_004655240.1 1911688 R 761193 CDS YP_004655241.1 338211188 10870206 complement(1912210..1912566) 1 NC_015703.1 PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type; COGs: COG0097 Ribosomal protein L6P/L9E; InterPro IPR020040:IPR019906; KEGG: sli:Slin_5772 ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain; SPTR: 50S ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type; 50S ribosomal protein L18 1912566 10870206 Runsl_1685 Runella slithyformis DSM 19594 50S ribosomal protein L18 YP_004655241.1 1912210 R 761193 CDS YP_004655242.1 338211189 10870207 complement(1912594..1913151) 1 NC_015703.1 PFAM: Ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type; COGs: COG0096 Ribosomal protein S8; InterPro IPR000630; KEGG: sli:Slin_5773 ribosomal protein S8; PFAM: Ribosomal protein S8; SPTR: 30S ribosomal protein S8; 50S ribosomal protein L6 1913151 10870207 Runsl_1686 Runella slithyformis DSM 19594 50S ribosomal protein L6 YP_004655242.1 1912594 R 761193 CDS YP_004655243.1 338211190 10870208 complement(1913171..1913569) 1 NC_015703.1 PFAM: Ribosomal protein S8; COGs: COG0199 Ribosomal protein S14; HAMAP: 30S ribosomal protein S14; InterPro IPR001209; KEGG: sli:Slin_5774 ribosomal protein S14; PFAM: Ribosomal protein S14; SPTR: 30S ribosomal protein S14; 30S ribosomal protein S8 1913569 10870208 Runsl_1687 Runella slithyformis DSM 19594 30S ribosomal protein S8 YP_004655243.1 1913171 R 761193 CDS YP_004655244.1 338211191 10870209 complement(1913647..1913916) 1 NC_015703.1 PFAM: Ribosomal protein S14p/S29e; COGs: COG0094 Ribosomal protein L5; InterPro IPR002132; KEGG: sli:Slin_5775 ribosomal protein L5; PFAM: Ribosomal protein L5; SPTR: 50S ribosomal protein L5; 30S ribosomal protein S14 1913916 10870209 Runsl_1688 Runella slithyformis DSM 19594 30S ribosomal protein S14 YP_004655244.1 1913647 R 761193 CDS YP_004655245.1 338211192 10870210 complement(1913944..1914498) 1 NC_015703.1 PFAM: ribosomal L5P family C-terminus; Ribosomal protein L5; COGs: COG0198 Ribosomal protein L24; InterPro IPR005824:IPR003256; KEGG: lby:Lbys_1819 lsu ribosomal protein l24p; PFAM: KOW; SMART: KOW; SPTR: 50S ribosomal protein L24; TIGRFAM: Ribosomal protein L24; 50S ribosomal protein L5 1914498 10870210 Runsl_1689 Runella slithyformis DSM 19594 50S ribosomal protein L5 YP_004655245.1 1913944 R 761193 CDS YP_004655246.1 338211193 10870211 complement(1914583..1914936) 1 NC_015703.1 PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle; COGs: COG0093 Ribosomal protein L14; InterPro IPR000218:IPR005745; KEGG: shg:Sph21_1725 ribosomal protein L14; PFAM: Ribosomal protein L14b/L23e; SPTR: 50S ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type; 50S ribosomal protein L24 1914936 10870211 Runsl_1690 Runella slithyformis DSM 19594 50S ribosomal protein L24 YP_004655246.1 1914583 R 761193 CDS YP_004655247.1 338211194 10870212 complement(1914942..1915310) 1 NC_015703.1 PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle; COGs: COG0186 Ribosomal protein S17; InterPro IPR000266:IPR019984; KEGG: sli:Slin_5778 30S ribosomal protein S17; PFAM: Ribosomal protein S17; SPTR: 30S ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; 50S ribosomal protein L14 1915310 10870212 Runsl_1691 Runella slithyformis DSM 19594 50S ribosomal protein L14 YP_004655247.1 1914942 R 761193 CDS YP_004655248.1 338211195 10870213 complement(1915313..1915597) 1 NC_015703.1 PFAM: Ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; InterPro IPR001854; KEGG: chu:CHU_3154 50S ribosomal protein L29; PFAM: Ribosomal protein L29; SPTR: 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29; 30S ribosomal protein S17 1915597 10870213 Runsl_1692 Runella slithyformis DSM 19594 30S ribosomal protein S17 YP_004655248.1 1915313 R 761193 CDS YP_004655249.1 338211196 10870214 complement(1915637..1915837) 1 NC_015703.1 PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; COGs: COG0197 Ribosomal protein L16/L10E; HAMAP: Ribosomal protein L16; InterPro IPR000114:IPR016180; KEGG: dfe:Dfer_4350 50S ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; SPTR: 50S ribosomal protein L16; TIGRFAM: Ribosomal protein L16; 50S ribosomal protein L29 1915837 10870214 Runsl_1693 Runella slithyformis DSM 19594 50S ribosomal protein L29 YP_004655249.1 1915637 R 761193 CDS YP_004655250.1 338211197 10870215 complement(1915849..1916283) 1 NC_015703.1 PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle; COGs: COG0092 Ribosomal protein S3; InterProIPR008282:IPR004044:IPR001351:IPR004087:IPR 005704; KEGG: dfe:Dfer_4349 30S ribosomal protein S3; PFAM: Ribosomal protein S3, C-terminal; Ribosomal protein S3, N-terminal; K Homology, type 2; SMART: K Homology; SPTR: 30S ribosomal protein S3; TIGRFAM: Ribosomal protein S3, bacterial; 50S ribosomal protein L16 1916283 10870215 Runsl_1694 Runella slithyformis DSM 19594 50S ribosomal protein L16 YP_004655250.1 1915849 R 761193 CDS YP_004655251.1 338211198 10870216 complement(1916331..1917185) 1 NC_015703.1 PFAM: KH domain; Ribosomal protein S3, C-terminal domain; Ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type; COGs: COG0091 Ribosomal protein L22; InterPro IPR001063:IPR005727; KEGG: dfe:Dfer_4348 ribosomal protein L22; PFAM: Ribosomal protein L22/L17; SPTR: 50S ribosomal protein L22; TIGRFAM: Ribosomal protein L22, bacterial-type; 30S ribosomal protein S3 1917185 10870216 Runsl_1695 Runella slithyformis DSM 19594 30S ribosomal protein S3 YP_004655251.1 1916331 R 761193 CDS YP_004655252.1 338211199 10870217 complement(1917199..1917564) 1 NC_015703.1 PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type; COGs: COG0185 Ribosomal protein S19; InterPro IPR002222:IPR005732; KEGG: mtt:Ftrac_3036 SSU ribosomal protein s19p; PFAM: Ribosomal protein S19/S15; SPTR: 30S ribosomal protein S19; TIGRFAM: Ribosomal protein S19, bacterial-type; 50S ribosomal protein L22 1917564 10870217 Runsl_1696 Runella slithyformis DSM 19594 50S ribosomal protein L22 YP_004655252.1 1917199 R 761193 CDS YP_004655253.1 338211200 10870218 complement(1917642..1917920) 1 NC_015703.1 PFAM: Ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle; COGs: COG0090 Ribosomal protein L2; InterPro IPR002171:IPR005880; KEGG: dfe:Dfer_4346 ribosomal protein L2; PFAM: Ribosomal protein L2; SPTR: 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; 30S ribosomal protein S19 1917920 10870218 Runsl_1697 Runella slithyformis DSM 19594 30S ribosomal protein S19 YP_004655253.1 1917642 R 761193 CDS YP_004655254.1 338211201 10870219 complement(1917931..1918755) 1 NC_015703.1 PFAM: Ribosomal Proteins L2, RNA binding domain; Ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar; COGs: COG0089 Ribosomal protein L23; InterPro IPR013025; KEGG: lby:Lbys_1828 lsu ribosomal protein l23p; PFAM: Ribosomal protein L25/L23; SPTR: 50S ribosomal protein L23; 50S ribosomal protein L2 1918755 10870219 Runsl_1698 Runella slithyformis DSM 19594 50S ribosomal protein L2 YP_004655254.1 1917931 R 761193 CDS YP_004655255.1 338211202 10870220 complement(1918792..1919082) 1 NC_015703.1 PFAM: Ribosomal protein L23; COGs: COG0088 Ribosomal protein L4; InterPro IPR002136; KEGG: dfe:Dfer_4344 50S ribosomal protein L4; PFAM: Ribosomal protein L4/L1e; SPTR: 50S ribosomal protein L4; 50S ribosomal protein L25 1919082 10870220 Runsl_1699 Runella slithyformis DSM 19594 50S ribosomal protein L25 YP_004655255.1 1918792 R 761193 CDS YP_004655256.1 338211203 10870221 complement(1919087..1919716) 1 NC_015703.1 PFAM: Ribosomal protein L4/L1 family; TIGRFAM: 50S ribosomal protein L4, bacterial/organelle; COGs: COG0087 Ribosomal protein L3; InterPro IPR000597:IPR019927; KEGG: dfe:Dfer_4343 50S ribosomal protein L3; PFAM: Ribosomal protein L3; SPTR: 50S ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; 50S ribosomal protein L4 1919716 10870221 Runsl_1700 Runella slithyformis DSM 19594 50S ribosomal protein L4 YP_004655256.1 1919087 R 761193 CDS YP_004655257.1 338211204 10870222 complement(1919755..1920375) 1 NC_015703.1 PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial; 50S ribosomal protein L3 1920375 10870222 Runsl_1701 Runella slithyformis DSM 19594 50S ribosomal protein L3 YP_004655257.1 1919755 R 761193 CDS YP_004655258.1 338211205 10870223 1920554..1920673 1 NC_015703.1 KEGG: dfe:Dfer_4259 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1920673 10870223 Runsl_1702 Runella slithyformis DSM 19594 hypothetical protein YP_004655258.1 1920554 D 761193 CDS YP_004655259.1 338211206 10870224 1920818..1921675 1 NC_015703.1 COGs: COG0788 Formyltetrahydrofolate hydrolase; InterPro IPR002912:IPR002376:IPR004810; KEGG: dfe:Dfer_3669 formyltetrahydrofolate deformylase; PFAM: Formyl transferase, N-terminal; Amino acid-binding ACT; PRIAM: Formyltetrahydrofolate deformylase; SPTR: Formyltetrahydrofolate deformylase; TIGRFAM: Formyltetrahydrofolate deformylase; hypothetical protein 1921675 10870224 Runsl_1703 Runella slithyformis DSM 19594 hypothetical protein YP_004655259.1 1920818 D 761193 CDS YP_004655260.1 338211207 10870225 1921755..1922582 1 NC_015703.1 PFAM: Formyl transferase; TIGRFAM: formyltetrahydrofolate deformylase; COGs: COG4146 symporter; InterPro IPR001734:IPR019900; KEGG: dfe:Dfer_3072 SSS sodium solute transporter superfamily; PFAM: Sodium/solute symporter; SPTR: SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup; formyltetrahydrofolate deformylase 1922582 10870225 Runsl_1704 Runella slithyformis DSM 19594 formyltetrahydrofolate deformylase YP_004655260.1 1921755 D 761193 CDS YP_004655261.1 338211208 10870226 1922679..1924292 1 NC_015703.1 PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; COGs: COG5267 conserved hypothetical protein; InterPro IPR014917; KEGG: sli:Slin_5993 hypothetical protein; PFAM: Protein of unknown function DUF1800; SPTR: uncharacterized protein; sodium solute transporter superfamily protein 1924292 10870226 Runsl_1705 Runella slithyformis DSM 19594 sodium solute transporter superfamily protein YP_004655261.1 1922679 D 761193 CDS YP_004655262.1 338211209 10870227 1924419..1925852 1 NC_015703.1 PFAM: Protein of unknown function (DUF1800); COGs: COG4102 conserved hypothetical protein; InterPro IPR010869; KEGG: sli:Slin_5994 hypothetical protein; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein; hypothetical protein 1925852 10870227 Runsl_1706 Runella slithyformis DSM 19594 hypothetical protein YP_004655262.1 1924419 D 761193 CDS YP_004655263.1 338211210 10870228 1925878..1927080 1 NC_015703.1 PFAM: Protein of unknown function (DUF1501); COGs: COG1778 Low specificity phosphatase (HAD superfamily); KEGG: sli:Slin_2801 low specificity phosphatase (HAD superfamily)-like protein; SPTR: Low specificity phosphatase (HAD superfamily)-like protein; hypothetical protein 1927080 10870228 Runsl_1707 Runella slithyformis DSM 19594 hypothetical protein YP_004655263.1 1925878 D 761193 CDS YP_004655264.1 338211211 10870229 1927193..1927915 1 NC_015703.1 COGs: COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase; HAMAP: NAD(P)H-quinone oxidoreductase subunit K; InterPro IPR006137:IPR006138; KEGG: dfe:Dfer_2472 NADH-quinone oxidoreductase, B subunit; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit B 1; TIGRFAM: NADH:ubiquinone oxidoreductase, 20kDa subunit; low specificity phosphatase (HAD superfamily)-like protein 1927915 10870229 Runsl_1708 Runella slithyformis DSM 19594 low specificity phosphatase (HAD superfamily)-like protein YP_004655264.1 1927193 D 761193 CDS YP_004655265.1 338211212 10870230 1927920..1928474 1 NC_015703.1 PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; COGs: COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit J; InterPro IPR001268:IPR010218; KEGG: sli:Slin_6042 NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit; SPTR: NADH-quinone oxidoreductase subunit C 2; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; NAD(P)H-quinone oxidoreductase subunit K 1928474 10870230 Runsl_1709 Runella slithyformis DSM 19594 NAD(P)H-quinone oxidoreductase subunit K YP_004655265.1 1927920 D 761193 CDS YP_004655266.1 338211213 10870231 1928464..1928961 1 NC_015703.1 PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; KEGG: dfe:Dfer_3979 hypothetical protein; SPTR: uncharacterized protein; NAD(P)H-quinone oxidoreductase subunit J 1928961 10870231 Runsl_1710 Runella slithyformis DSM 19594 NAD(P)H-quinone oxidoreductase subunit J YP_004655266.1 1928464 D 761193 CDS YP_004655267.1 338211214 10870232 1929102..1929323 1 NC_015703.1 PFAM: Protein of unknown function (DUF2795); hypothetical protein 1929323 10870232 Runsl_1711 Runella slithyformis DSM 19594 hypothetical protein YP_004655267.1 1929102 D 761193 CDS YP_004655268.1 338211215 10870238 complement(1934889..1935245) 1 NC_015703.1 COGs: COG0599 gamma-carboxymuconolactone decarboxylase subunit; InterPro IPR003779; KEGG: mtt:Ftrac_2384 alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; SPTR: Carboxymuconolactone decarboxylase; hypothetical protein 1935245 10870238 Runsl_1712 Runella slithyformis DSM 19594 hypothetical protein YP_004655268.1 1934889 R 761193 CDS YP_004655269.1 338211216 10870239 complement(1935293..1935637) 1 NC_015703.1 PFAM: Carboxymuconolactone decarboxylase; TIGRFAM: alkylhydroperoxidase AhpD family core domain; KEGG: sli:Slin_1861 hypothetical protein; SPTR: uncharacterized protein; carboxymuconolactone decarboxylase 1935637 10870239 Runsl_1713 Runella slithyformis DSM 19594 carboxymuconolactone decarboxylase YP_004655269.1 1935293 R 761193 CDS YP_004655270.1 338211217 10870240 complement(1935662..1938349) 1 NC_015703.1 PFAM: Mannosyl oligosaccharide glucosidase; COGs: COG0775 Nucleoside phosphorylase; InterPro IPR000845:IPR010049; KEGG: sli:Slin_0223 adenosylhomocysteine nucleosidase; PFAM: Nucleoside phosphorylase; PRIAM: Adenosylhomocysteine nucleosidase; SPTR: Adenosylhomocysteine nucleosidase; TIGRFAM: MTA/SAH nucleosidase; hypothetical protein 1938349 10870240 Runsl_1714 Runella slithyformis DSM 19594 hypothetical protein YP_004655270.1 1935662 R 761193 CDS YP_004655271.1 338211218 10870241 1938453..1939289 1 NC_015703.1 PFAM: Phosphorylase superfamily; TIGRFAM: futalosine nucleosidase; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; KEGG: psl:Psta_1770 hypothetical protein; SPTR: uncharacterized protein; MTA/SAH nucleosidase 1939289 10870241 Runsl_1715 Runella slithyformis DSM 19594 MTA/SAH nucleosidase YP_004655271.1 1938453 D 761193 CDS YP_004655272.1 338211219 10870242 1939341..1940900 1 NC_015703.1 PFAM: Neutral/alkaline non-lysosomal ceramidase; COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022; KEGG: dfe:Dfer_3637 propionyl-CoA carboxylase; PFAM: Carboxyl transferase; PRIAM: Methylcrotonoyl-CoA carboxylase; SPTR: Propionyl-CoA carboxylase; hypothetical protein 1940900 10870242 Runsl_1716 Runella slithyformis DSM 19594 hypothetical protein YP_004655272.1 1939341 D 761193 CDS YP_004655273.1 338211220 10870243 1940962..1942590 1 NC_015703.1 PFAM: Carboxyl transferase domain; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sat:SYN_02665 glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase; methylcrotonoyl-CoA carboxylase 1942590 10870243 Runsl_1717 Runella slithyformis DSM 19594 methylcrotonoyl-CoA carboxylase YP_004655273.1 1940962 D 761193 CDS YP_004655274.1 338211221 10870244 1942619..1943398 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: nde:NIDE2697 capsular polysaccharide biosynthesis glycosyltransferase CapM; PFAM: Glycosyl transferase, group 1; SPTR: Capsular polysaccharide biosynthesis glycosyltransferase CapM; family 2 glycosyl transferase 1943398 10870244 Runsl_1718 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004655274.1 1942619 D 761193 CDS YP_004655275.1 338211222 10870245 1943467..1944654 1 NC_015703.1 PFAM: Glycosyl transferases group 1; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: ran:Riean_0747 sugar transferase; PFAM: Bacterial sugar transferase; SPTR: General glycosylation pathway protein; group 1 glycosyl transferase 1944654 10870245 Runsl_1719 Runella slithyformis DSM 19594 group 1 glycosyl transferase YP_004655275.1 1943467 D 761193 CDS YP_004655276.1 338211223 10870246 1944641..1945252 1 NC_015703.1 PFAM: Bacterial sugar transferase; COGs: COG0663 Carbonic anhydrase/acetyltransferase isoleucine patch superfamily; InterPro IPR001451:IPR020019; KEGG: dfe:Dfer_3630 hexapeptide repeat-containing protein acetyltransferase; SPTR: Hexapeptide repeat-containing protein acetyltransferase; TIGRFAM: Sialic acid O-acyltransferase, NeuD; sugar transferase 1945252 10870246 Runsl_1720 Runella slithyformis DSM 19594 sugar transferase YP_004655276.1 1944641 D 761193 CDS YP_004655277.1 338211224 10870247 1945254..1945856 1 NC_015703.1 TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; KEGG: dfe:Dfer_4242 hypothetical protein; SPTR: uncharacterized protein; sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family 1945856 10870247 Runsl_1721 Runella slithyformis DSM 19594 sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family YP_004655277.1 1945254 D 761193 CDS YP_004655278.1 338211225 10870248 complement(1945843..1946175) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1469); COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; HAMAP: UbiE/COQ5 methyltransferase; InterPro IPR004033; KEGG: dfe:Dfer_4023 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; SPTR: Menaquinone biosynthesis methyltransferase ubiE; TIGRFAM: UbiE/COQ5 methyltransferase; hypothetical protein 1946175 10870248 Runsl_1722 Runella slithyformis DSM 19594 hypothetical protein YP_004655278.1 1945843 R 761193 CDS YP_004655279.1 338211226 10870249 1946378..1947100 1 NC_015703.1 PFAM: ubiE/COQ5 methyltransferase; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; KEGG: dfe:Dfer_4024 PorT-related protein; SPTR: PorT-related protein; ubiquinone/menaquinone biosynthesis methyltransferase ubiE 1947100 10870249 Runsl_1723 Runella slithyformis DSM 19594 ubiquinone/menaquinone biosynthesis methyltransferase ubiE YP_004655279.1 1946378 D 761193 CDS YP_004655280.1 338211227 10870250 1947049..1947783 1 NC_015703.1 COGs: COG3491 Isopenicillin N synthase and related dioxygenase; InterPro IPR005123; KEGG: dfe:Dfer_2706 2OG-Fe(II) oxygenase; PFAM: Oxoglutarate/iron-dependent oxygenase; SPTR: 2OG-Fe(II) oxygenase; PorT-like protein 1947783 10870250 Runsl_1724 Runella slithyformis DSM 19594 PorT-like protein YP_004655280.1 1947049 D 761193 CDS YP_004655281.1 338211228 10870251 1947936..1948895 1 NC_015703.1 PFAM: 2OG-Fe(II) oxygenase superfamily; COGs: COG2059 Chromate transport protein ChrA; InterPro IPR003370:IPR014047; KEGG: sli:Slin_1603 chromate transporter chromate ion transporter (CHR) family; PFAM: Chromate transporter region; SPTR: Chromate transporter, chromate ion transporter (CHR) family; TIGRFAM: Chromate transporter; 2OG-Fe(II) oxygenase 1948895 10870251 Runsl_1725 Runella slithyformis DSM 19594 2OG-Fe(II) oxygenase YP_004655281.1 1947936 D 761193 CDS YP_004655282.1 338211229 10870252 1948986..1950191 1 NC_015703.1 PFAM: Chromate transporter; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; InterPro IPR019500; KEGG: psn:Pedsa_0497 peptidase S46; PFAM: Peptidase S46; SPTR: Peptidase S46; chromate ion transporter family chromate transporter 1950191 10870252 Runsl_1726 Runella slithyformis DSM 19594 chromate ion transporter family chromate transporter YP_004655282.1 1948986 D 761193 CDS YP_004655283.1 338211230 10870253 1950233..1952383 1 NC_015703.1 PFAM: Peptidase S46; COGs: COG1160 GTPase; HAMAP: GTP-binding, EngA; InterPro IPR016484:IPR002917:IPR005225; KEGG: sli:Slin_5226 ribosome-associated GTPase EngA; PFAM: GTP-binding protein, HSR1-related; SPTR: GTP-binding protein engA; TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; peptidase S46 1952383 10870253 Runsl_1727 Runella slithyformis DSM 19594 peptidase S46 YP_004655283.1 1950233 D 761193 CDS YP_004655284.1 338211231 10870254 complement(1952446..1953753) 1 NC_015703.1 PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain; InterPro IPR008815; KEGG: psn:Pedsa_3189 S23 ribosomal protein; PFAM: 23S rRNA-associated protein; SPTR: S23 ribosomal protein; GTP-binding protein engA 1953753 10870254 Runsl_1728 Runella slithyformis DSM 19594 GTP-binding protein engA YP_004655284.1 1952446 R 761193 CDS YP_004655285.1 338211232 10870255 complement(1953800..1954162) 1 NC_015703.1 PFAM: S23 ribosomal protein; COGs: COG1159 GTPase; HAMAP: GTP-binding protein Era; InterPro IPR005662:IPR002917:IPR004044:IPR005225; KEGG: dfe:Dfer_3856 GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2; SPTR: GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; S23 ribosomal protein 1954162 10870255 Runsl_1729 Runella slithyformis DSM 19594 S23 ribosomal protein YP_004655285.1 1953800 R 761193 CDS YP_004655286.1 338211233 10870256 complement(1954198..1955181) 1 NC_015703.1 PFAM: KH domain; GTPase of unknown function; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain; GTP-binding protein Era 1955181 10870256 Runsl_1730 Runella slithyformis DSM 19594 GTP-binding protein Era YP_004655286.1 1954198 R 761193 CDS YP_004655287.1 338211234 10870258 1955453..1955815 1 NC_015703.1 COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: cao:Celal_2798 transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase; hypothetical protein 1955815 10870258 Runsl_1731 Runella slithyformis DSM 19594 hypothetical protein YP_004655287.1 1955453 D 761193 CDS YP_004655288.1 338211235 10870259 1955796..1956779 1 NC_015703.1 PFAM: Transposase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: sli:Slin_1698 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1956779 10870259 Runsl_1732 Runella slithyformis DSM 19594 transposase IS204/IS1001/IS1096/IS1165 family protein YP_004655288.1 1955796 D 761193 CDS YP_004655289.1 338211236 10870260 complement(1957428..1958525) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839; KEGG: dfe:Dfer_3258 glycine C-acetyltransferase; PFAM: Aminotransferase, class I/II; PRIAM: Glycine C-acetyltransferase; SPTR: Glycine C-acetyltransferase; oxidoreductase domain-containing protein 1958525 10870260 Runsl_1733 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004655289.1 1957428 R 761193 CDS YP_004655290.1 338211237 10870261 complement(1958639..1959907) 1 NC_015703.1 PFAM: Aminotransferase class I and II; KEGG: dfe:Dfer_3229 hypothetical protein; SPTR: uncharacterized protein; glycine C-acetyltransferase 1959907 10870261 Runsl_1734 Runella slithyformis DSM 19594 glycine C-acetyltransferase YP_004655290.1 1958639 R 761193 CDS YP_004655291.1 338211238 10870262 1960136..1960474 1 NC_015703.1 KEGG: bca:BCE_5389 O-antigen polymerase (wzy); SPTR: O-antigen polymerase (Wzy); hypothetical protein 1960474 10870262 Runsl_1735 Runella slithyformis DSM 19594 hypothetical protein YP_004655291.1 1960136 D 761193 CDS YP_004655292.1 338211239 10870263 complement(1960485..1961771) 1 NC_015703.1 PFAM: O-Antigen ligase; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: tmt:Tmath_0930 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; hypothetical protein 1961771 10870263 Runsl_1736 Runella slithyformis DSM 19594 hypothetical protein YP_004655292.1 1960485 R 761193 CDS YP_004655293.1 338211240 10870264 complement(1961830..1962966) 1 NC_015703.1 PFAM: Glycosyl transferases group 1; InterPro IPR013216; KEGG: chu:CHU_1562 SAM-dependent methyltransferase; PFAM: Methyltransferase type 11; SPTR: SAM-dependent methyltransferase; group 1 glycosyl transferase 1962966 10870264 Runsl_1737 Runella slithyformis DSM 19594 group 1 glycosyl transferase YP_004655293.1 1961830 R 761193 CDS YP_004655294.1 338211241 10870265 complement(1962963..1963730) 1 NC_015703.1 PFAM: Methyltransferase domain; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: naz:Aazo_4909 group 1 glycosyl transferase; PFAM: Glycosyl transferase, group 1; SPTR: Group 1 glycosyl transferase; type 11 methyltransferase 1963730 10870265 Runsl_1738 Runella slithyformis DSM 19594 type 11 methyltransferase YP_004655294.1 1962963 R 761193 CDS YP_004655295.1 338211242 10870266 complement(1963884..1964930) 1 NC_015703.1 PFAM: Glycosyl transferases group 1; COGs: COG3458 Acetyl esterase (deacetylase); InterPro IPR008391; KEGG: dfe:Dfer_1236 acetyl xylan esterase; PFAM: Acetyl xylan esterase; PRIAM: Cephalosporin-C deacetylase; SPTR: Acetyl xylan esterase; group 1 glycosyl transferase 1964930 10870266 Runsl_1739 Runella slithyformis DSM 19594 group 1 glycosyl transferase YP_004655295.1 1963884 R 761193 CDS YP_004655296.1 338211243 10870267 1965013..1966374 1 NC_015703.1 PFAM: Acetyl xylan esterase (AXE1); COGs: COG1983 stress-responsive transcriptional regulator protein; InterPro IPR007168; KEGG: dfe:Dfer_3554 phage shock protein C, PspC; PFAM: PspC; SPTR: Phage shock protein C, PspC; cephalosporin-C deacetylase 1966374 10870267 Runsl_1740 Runella slithyformis DSM 19594 cephalosporin-C deacetylase YP_004655296.1 1965013 D 761193 CDS YP_004655297.1 338211244 10870268 complement(1966423..1966656) 1 NC_015703.1 PFAM: PspC domain; COGs: COG1735 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR001559; KEGG: dfe:Dfer_5616 aryldialkylphosphatase; PFAM: Aryldialkylphosphatase; SPTR: Aryldialkylphosphatase; phage shock protein PspC 1966656 10870268 Runsl_1741 Runella slithyformis DSM 19594 phage shock protein PspC YP_004655297.1 1966423 R 761193 CDS YP_004655298.1 338211245 10870269 complement(1966815..1967810) 1 NC_015703.1 PFAM: Phosphotriesterase; InterPro IPR005202; KEGG: sur:STAUR_0635 GRAs-like transcription factor; PFAM: GRAS transcription factor; SPTR: GAI protein; aryldialkylphosphatase 1967810 10870269 Runsl_1742 Runella slithyformis DSM 19594 aryldialkylphosphatase YP_004655298.1 1966815 R 761193 CDS YP_004655299.1 338211246 10870270 complement(1967826..1968743) 1 NC_015703.1 PFAM: GRAS family transcription factor; COGs: COG4634 conserved hypothetical protein; KEGG: tra:Trad_0710 hypothetical protein; SPTR: uncharacterized protein; manually curated; GRAS transcription factor 1968743 10870270 Runsl_1743 Runella slithyformis DSM 19594 GRAS transcription factor YP_004655299.1 1967826 R 761193 CDS YP_004655300.1 338211247 10870271 complement(1968728..1969003) 1 NC_015703.1 COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: fjo:Fjoh_4961 hypothetical protein; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein; hypothetical protein 1969003 10870271 Runsl_1744 Runella slithyformis DSM 19594 hypothetical protein YP_004655300.1 1968728 R 761193 CDS YP_004655301.1 338211248 10870272 complement(1969003..1969317) 1 NC_015703.1 PFAM: Protein of unknown function (DUF433); COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176:IPR006108:IPR001753; KEGG: dfe:Dfer_3526 3-hydroxyacyl-CoA dehydrogenase NAD-binding; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; SPTR: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; hypothetical protein 1969317 10870272 Runsl_1745 Runella slithyformis DSM 19594 hypothetical protein YP_004655301.1 1969003 R 761193 CDS YP_004655302.1 338211249 10870273 complement(1969367..1971769) 1 NC_015703.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; 3-hydroxyacyl-CoA dehydrogenase 1971769 10870273 Runsl_1746 Runella slithyformis DSM 19594 3-hydroxyacyl-CoA dehydrogenase YP_004655302.1 1969367 R 761193 CDS YP_004655303.1 338211250 10870274 complement(1971888..1972043) 1 NC_015703.1 COGs: COG0216 Protein chain release factor A; HAMAP: Peptide chain release factor 1; InterPro IPR004373:IPR005139:IPR000352; KEGG: sli:Slin_4995 peptide chain release factor 1; PFAM: Class I peptide chain release factor; Peptide chain release factor; SPTR: Peptide chain release factor 1; TIGRFAM: Peptide chain release factor 1; hypothetical protein 1972043 10870274 Runsl_1747 Runella slithyformis DSM 19594 hypothetical protein YP_004655303.1 1971888 R 761193 CDS YP_004655304.1 338211251 10870275 1972053..1973129 1 NC_015703.1 PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1; COGs: COG3592 conserved hypothetical protein; InterPro IPR010693:IPR018967:IPR006622; KEGG: sli:Slin_1437 hypothetical protein; PFAM: Ferredoxin soy-like; Iron sulphur domain-containing, CDGSH-type; SPTR: uncharacterized protein; peptide chain release factor 1 1973129 10870275 Runsl_1748 Runella slithyformis DSM 19594 peptide chain release factor 1 YP_004655304.1 1972053 D 761193 CDS YP_004655305.1 338211252 10870276 1973205..1973633 1 NC_015703.1 PFAM: Iron-binding zinc finger CDGSH type; Protein of unknown function (DUF1271); COGs: COG4299 conserved hypothetical protein; InterPro IPR019259; KEGG: sli:Slin_6602 heparan-alpha-glucosaminide N-acetyltransferase; PFAM: Protein of unknown function DUF2261, transmembrane; SPTR: Heparan-alpha-glucosaminide N-acetyltransferase; hypothetical protein 1973633 10870276 Runsl_1749 Runella slithyformis DSM 19594 hypothetical protein YP_004655305.1 1973205 D 761193 CDS YP_004655306.1 338211253 10870277 1973731..1974855 1 NC_015703.1 InterPro IPR014883; KEGG: sli:Slin_3132 VRR-NUC domain protein; PFAM: VRR-NUC; SPTR: VRR-NUC domain protein; hypothetical protein 1974855 10870277 Runsl_1750 Runella slithyformis DSM 19594 hypothetical protein YP_004655306.1 1973731 D 761193 CDS YP_004655307.1 338211254 10870278 complement(1974920..1976785) 1 NC_015703.1 PFAM: VRR-NUC domain; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_5600 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein; VRR-NUC domain-containing protein 1976785 10870278 Runsl_1751 Runella slithyformis DSM 19594 VRR-NUC domain-containing protein YP_004655307.1 1974920 R 761193 CDS YP_004655308.1 338211255 10870279 1976973..1978538 1 NC_015703.1 PFAM: WD40-like Beta Propeller Repeat; OmpA family; KEGG: dfe:Dfer_2958 hypothetical protein; SPTR: uncharacterized protein; OmpA/MotB domain-containing protein 1978538 10870279 Runsl_1752 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004655308.1 1976973 D 761193 CDS YP_004655309.1 338211256 10870280 complement(1978585..1978989) 1 NC_015703.1 COGs: COG0572 Uridine kinase; KEGG: lby:Lbys_3327 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1978989 10870280 Runsl_1753 Runella slithyformis DSM 19594 hypothetical protein YP_004655309.1 1978585 R 761193 CDS YP_004655310.1 338211257 10870281 complement(1979073..1979588) 1 NC_015703.1 PFAM: Phosphoribulokinase / Uridine kinase; COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: sli:Slin_1076 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase domain protein; hypothetical protein 1979588 10870281 Runsl_1754 Runella slithyformis DSM 19594 hypothetical protein YP_004655310.1 1979073 R 761193 CDS YP_004655311.1 338211258 10870282 complement(1979725..1981518) 1 NC_015703.1 PFAM: Acyl-CoA dehydrogenase N terminal; Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR000674:IPR008274:IPR006311; KEGG: dfe:Dfer_0019 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; butyryl-CoA dehydrogenase 1981518 10870282 Runsl_1755 Runella slithyformis DSM 19594 butyryl-CoA dehydrogenase YP_004655311.1 1979725 R 761193 CDS YP_004655312.1 338211259 10870283 complement(1981706..1983859) 1 NC_015703.1 PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; InterPro IPR001041:IPR002888; KEGG: sli:Slin_5426 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; Ferredoxin; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: (2Fe-2S)-binding domain protein; isoquinoline 1-oxidoreductase 1983859 10870283 Runsl_1756 Runella slithyformis DSM 19594 isoquinoline 1-oxidoreductase YP_004655312.1 1981706 R 761193 CDS YP_004655313.1 338211260 10870284 complement(1983913..1984401) 1 NC_015703.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain; COGs: COG2360 Leu/Phe-tRNA-protein transferase; HAMAP: Leucyl/phenylalanyl-tRNA-protein transferase; InterPro IPR004616; KEGG: sli:Slin_0427 leucyl/phenylalanyl-tRNA/protein transferase; PFAM: Leucyl/phenylalanyl-tRNA-protein transferase; PRIAM: Leucyltransferase; SPTR: Leucyl/phenylalanyl-tRNA--protein transferase; TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase; isoquinoline 1-oxidoreductase 1984401 10870284 Runsl_1757 Runella slithyformis DSM 19594 isoquinoline 1-oxidoreductase YP_004655313.1 1983913 R 761193 CDS YP_004655314.1 338211261 10870285 complement(1984612..1985181) 1 NC_015703.1 PFAM: Leucyl/phenylalanyl-tRNA protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA--protein transferase; COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: sli:Slin_5748 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family; leucyl/phenylalanyl-tRNA--protein transferase 1985181 10870285 Runsl_1758 Runella slithyformis DSM 19594 leucyl/phenylalanyl-tRNA--protein transferase YP_004655314.1 1984612 R 761193 CDS YP_004655315.1 338211262 10870286 1985236..1985931 1 NC_015703.1 PFAM: GDSL-like Lipase/Acylhydrolase; COGs: COG0017 Aspartyl/asparaginyl-tRNA synthetase; HAMAP: Asparaginyl-tRNA synthetase; InterPro IPR004365:IPR004364:IPR004522; KEGG: dfe:Dfer_4215 asparaginyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: Asparagine--tRNA ligase; SPTR: Asparaginyl-tRNA synthetase; TIGRFAM: Asparaginyl-tRNA synthetase, class IIb; G-D-S-L family lipolytic protein 1985931 10870286 Runsl_1759 Runella slithyformis DSM 19594 G-D-S-L family lipolytic protein YP_004655315.1 1985236 D 761193 CDS YP_004655316.1 338211263 10870287 1986376..1987827 1 NC_015703.1 PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: asparaginyl-tRNA synthetase; KEGG: lby:Lbys_2582 hypothetical protein; SPTR: uncharacterized protein; asparaginyl-tRNA synthetase 1987827 10870287 Runsl_1760 Runella slithyformis DSM 19594 asparaginyl-tRNA synthetase YP_004655316.1 1986376 D 761193 CDS YP_004655317.1 338211264 10870288 1987955..1988275 1 NC_015703.1 PFAM: Protein of unknown function (DUF3467); COGs: COG3781 membrane protein; InterPro IPR007913; KEGG: cpi:Cpin_2003 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 1988275 10870288 Runsl_1761 Runella slithyformis DSM 19594 hypothetical protein YP_004655317.1 1987955 D 761193 CDS YP_004655318.1 338211265 10870289 1988308..1989171 1 NC_015703.1 PFAM: Bestrophin; COGs: COG0540 Aspartate carbamoyltransferase catalytic chain; HAMAP: Aspartate carbamoyltransferase; InterPro IPR006132:IPR006131:IPR002082; KEGG: dfe:Dfer_2657 aspartate carbamoyltransferase catalytic subunit; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; PRIAM: Aspartate carbamoyltransferase; SPTR: Aspartate carbamoyltransferase; TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; hypothetical protein 1989171 10870289 Runsl_1762 Runella slithyformis DSM 19594 hypothetical protein YP_004655318.1 1988308 D 761193 CDS YP_004655319.1 338211266 10870290 1989259..1990179 1 NC_015703.1 PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase; InterPro IPR006710:IPR000421; KEGG: cpi:Cpin_1751 coagulation factor 5/8 type domain protein; PFAM: Coagulation factor 5/8 type, C-terminal; Glycoside hydrolase, family 43; SPTR: Coagulation factor 5/8 type domain protein; aspartate carbamoyltransferase 1990179 10870290 Runsl_1763 Runella slithyformis DSM 19594 aspartate carbamoyltransferase YP_004655319.1 1989259 D 761193 CDS YP_004655320.1 338211267 10870291 1990209..1991957 1 NC_015703.1 PFAM: F5/8 type C domain; Glycosyl hydrolases family 43; COGs: COG2352 Phosphoenolpyruvate carboxylase; InterPro IPR001449; KEGG: dfe:Dfer_3929 phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase; PRIAM: Phosphoenolpyruvate carboxylase; SPTR: Phosphoenolpyruvate carboxylase; coagulation factor 5/8 type domain-containing protein 1991957 10870291 Runsl_1764 Runella slithyformis DSM 19594 coagulation factor 5/8 type domain-containing protein YP_004655320.1 1990209 D 761193 CDS YP_004655321.1 338211268 10870292 complement(1992018..1994591) 1 NC_015703.1 PFAM: Phosphoenolpyruvate carboxylase; KEGG: sli:Slin_5160 hypothetical protein; SPTR: uncharacterized protein; phosphoenolpyruvate carboxylase 1994591 10870292 Runsl_1765 Runella slithyformis DSM 19594 phosphoenolpyruvate carboxylase YP_004655321.1 1992018 R 761193 CDS YP_004655322.1 338211269 10870293 1994813..1996927 1 NC_015703.1 hypothetical protein 1996927 10870293 Runsl_1766 Runella slithyformis DSM 19594 hypothetical protein YP_004655322.1 1994813 D 761193 CDS YP_004655323.1 338211270 10870294 1996949..1997143 1 NC_015703.1 COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; HAMAP: Phospho-N-acetylmuramoyl-pentapeptide transferase; InterPro IPR003524:IPR018480:IPR018481; KEGG: dfe:Dfer_3519 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; SPTR:Phospho-N-acetylmuramoyl-pentapeptide-transfer ase; TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; hypothetical protein 1997143 10870294 Runsl_1767 Runella slithyformis DSM 19594 hypothetical protein YP_004655323.1 1996949 D 761193 CDS YP_004655324.1 338211271 10870295 1997363..1998646 1 NC_015703.1 PFAM: Glycosyl transferase 4; Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; InterPro IPR013078; KEGG: sli:Slin_4770 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase; phospho-N-acetylmuramoyl-pentapeptide- transferase 1998646 10870295 Runsl_1768 Runella slithyformis DSM 19594 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_004655324.1 1997363 D 761193 CDS YP_004655325.1 338211272 10870296 complement(1998679..1999218) 1 NC_015703.1 PFAM: Phosphoglycerate mutase; KEGG: dfe:Dfer_3805 tetratricopeptide domain protein; SPTR: Tetratricopeptide domain protein; phosphoglycerate mutase 1999218 10870296 Runsl_1769 Runella slithyformis DSM 19594 phosphoglycerate mutase YP_004655325.1 1998679 R 761193 CDS YP_004655326.1 338211273 10870297 complement(1999236..2001227) 1 NC_015703.1 KEGG: dfe:Dfer_3804 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2001227 10870297 Runsl_1770 Runella slithyformis DSM 19594 hypothetical protein YP_004655326.1 1999236 R 761193 CDS YP_004655327.1 338211274 10870298 complement(2001632..2003305) 1 NC_015703.1 COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; HAMAP: Glucose-inhibited division protein A; InterPro IPR004416:IPR002218; KEGG: dfe:Dfer_3802 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: Glucose-inhibited division protein A-related; SPTR: tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; TIGRFAM: Glucose-inhibited division protein A; hypothetical protein 2003305 10870298 Runsl_1771 Runella slithyformis DSM 19594 hypothetical protein YP_004655327.1 2001632 R 761193 CDS YP_004655328.1 338211275 10870299 complement(2003780..2005642) 1 NC_015703.1 PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A; COGs: COG0319 metal-dependent hydrolase; HAMAP: Uncharacterised protein family UPF0054; InterPro IPR002036; KEGG: dfe:Dfer_3801 protein of unknown function UPF0054; PFAM: Uncharacterised protein family UPF0054; SPTR: Probable rRNA maturation factor; TIGRFAM: Uncharacterised protein family UPF0054; tRNA uridine 5-carboxymethylaminomethyl modification protein MnmG 2005642 10870299 Runsl_1772 Runella slithyformis DSM 19594 tRNA uridine 5-carboxymethylaminomethyl modification protein MnmG YP_004655328.1 2003780 R 761193 CDS YP_004655329.1 338211276 10870300 complement(2005751..2006164) 1 NC_015703.1 PFAM: Uncharacterized protein family UPF0054; TIGRFAM: metalloprotein, YbeY/UPF0054 family; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: sli:Slin_4391 radical SAM protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein; metalloprotease ybeY 2006164 10870300 Runsl_1773 Runella slithyformis DSM 19594 metalloprotease ybeY YP_004655329.1 2005751 R 761193 CDS YP_004655330.1 338211277 10870301 complement(2006267..2007277) 1 NC_015703.1 PFAM: Radical SAM superfamily; COGs: COG0777 Acetyl-CoA carboxylase beta subunit; HAMAP: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; InterPro IPR000022:IPR000438; KEGG: sli:Slin_4392 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: Carboxyl transferase; PRIAM: Acetyl-CoA carboxylase; SPTR: Acetyl-CoA carboxylase, carboxyl transferase, beta subunit; TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; radical SAM protein 2007277 10870301 Runsl_1774 Runella slithyformis DSM 19594 radical SAM protein YP_004655330.1 2006267 R 761193 CDS YP_004655331.1 338211278 10870302 complement(2007318..2008160) 1 NC_015703.1 PFAM: Carboxyl transferase domain; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; COGs: COG4912 DNA alkylation repair protein; InterPro IPR014825; KEGG: pdi:BDI_2958 hypothetical protein; PFAM: DNA alkylation repair enzyme; SPTR: uncharacterized protein; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta 2008160 10870302 Runsl_1775 Runella slithyformis DSM 19594 acetyl-coenzyme A carboxylase carboxyl transferase subunit beta YP_004655331.1 2007318 R 761193 CDS YP_004655332.1 338211279 10870303 complement(2008301..2009002) 1 NC_015703.1 PFAM: DNA alkylation repair enzyme; COGs: COG0206 Cell division GTPase; InterPro IPR003008:IPR018316:IPR000158; KEGG: sli:Slin_4756 cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; SPTR: Cell division protein ftsZ; TIGRFAM: Cell division protein FtsZ, N-terminal; DNA alkylation repair protein 2009002 10870303 Runsl_1776 Runella slithyformis DSM 19594 DNA alkylation repair protein YP_004655332.1 2008301 R 761193 CDS YP_004655333.1 338211280 10870304 complement(2009009..2010511) 1 NC_015703.1 PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ; COGs: COG0849 Actin-like ATPase involved in cell division; InterPro IPR003494:IPR020823; KEGG: sli:Slin_4755 cell division protein FtsA; PFAM: Cell division protein FtsA domain; SPTR: Cell division protein FtsA; TIGRFAM: Cell division protein family FtsA; cell division protein FtsZ 2010511 10870304 Runsl_1777 Runella slithyformis DSM 19594 cell division protein FtsZ YP_004655333.1 2009009 R 761193 CDS YP_004655334.1 338211281 10870305 complement(2010620..2011915) 1 NC_015703.1 PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA; KEGG: sli:Slin_4754 hypothetical protein; SPTR: uncharacterized protein; cell division protein FtsA 2011915 10870305 Runsl_1778 Runella slithyformis DSM 19594 cell division protein FtsA YP_004655334.1 2010620 R 761193 CDS YP_004655335.1 338211282 10870306 complement(2011930..2012697) 1 NC_015703.1 COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; InterPro IPR005758:IPR000713:IPR013221:IPR004101; KEGG: sli:Slin_4753 UDP-N-acetylmuramate/alanine ligase; PFAM: Mur ligase, C-terminal; Mur ligase, central; Mur ligase, N-terminal; PRIAM: UDP-N-acetylmuramate--L-alanine ligase; SPTR: UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate-alanine ligase; hypothetical protein 2012697 10870306 Runsl_1779 Runella slithyformis DSM 19594 hypothetical protein YP_004655335.1 2011930 R 761193 CDS YP_004655336.1 338211283 10870307 complement(2012755..2014143) 1 NC_015703.1 PFAM: Mur ligase, glutamate ligase domain; Mur ligase, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate--alanine ligase; COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; HAMAP:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; InterPro IPR004276:IPR007235:IPR006009; KEGG: dfe:Dfer_3488 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyl transferase, family 28, C-terminal; Glycosyl transferase, family 28; SPTR:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: N-acetylglucosaminyltransferase, MurG; UDP-N-acetylmuramate--L-alanine ligase 2014143 10870307 Runsl_1780 Runella slithyformis DSM 19594 UDP-N-acetylmuramate--L-alanine ligase YP_004655336.1 2012755 R 761193 CDS YP_004655337.1 338211284 10870308 complement(2014192..2015286) 1 NC_015703.1 PFAM: Glycosyltransferase 28 C-terminal domain; Glycosyltransferase 28 N-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: sli:Slin_4751 cell cycle protein; PFAM: Cell cycle protein; SPTR: Cell cycle protein; UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase 2015286 10870308 Runsl_1781 Runella slithyformis DSM 19594 UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase YP_004655337.1 2014192 R 761193 CDS YP_004655338.1 338211285 10870309 complement(2015354..2016529) 1 NC_015703.1 PFAM: Cell cycle protein; COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; InterPro IPR005762:IPR013221:IPR004101; KEGG: sli:Slin_4750 UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase, central; Mur ligase, C-terminal; PRIAM: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; SPTR: UDP-N-acetylmuramoylalanine--D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; cell cycle protein 2016529 10870309 Runsl_1782 Runella slithyformis DSM 19594 cell cycle protein YP_004655338.1 2015354 R 761193 CDS YP_004655339.1 338211286 10870310 complement(2016534..2017898) 1 NC_015703.1 PFAM: Mur ligase, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; KEGG: dfe:Dfer_3699 hypothetical protein; SPTR: uncharacterized protein; UDP-N-acetylmuramoylalanine--D-glutamate ligase 2017898 10870310 Runsl_1783 Runella slithyformis DSM 19594 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_004655339.1 2016534 R 761193 CDS YP_004655340.1 338211287 10870311 complement(2018272..2019780) 1 NC_015703.1 PFAM: Planctomycete cytochrome C; KEGG: sli:Slin_4556 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2019780 10870311 Runsl_1784 Runella slithyformis DSM 19594 hypothetical protein YP_004655340.1 2018272 R 761193 CDS YP_004655341.1 338211288 10870312 complement(2019777..2021765) 1 NC_015703.1 PFAM: Alpha-L-fucosidase; COGs: COG0509 Glycine cleavage system H protein (lipoate-binding); HAMAP: Glycine cleavage H-protein; InterPro IPR002930:IPR017453; KEGG: mtt:Ftrac_3338 glycine cleavage system H protein; PFAM: Glycine cleavage H-protein; SPTR: Glycine cleavage system H protein; TIGRFAM: Glycine cleavage H-protein, subgroup; hypothetical protein 2021765 10870312 Runsl_1785 Runella slithyformis DSM 19594 hypothetical protein YP_004655341.1 2019777 R 761193 CDS YP_004655342.1 338211289 10870313 2021958..2022335 1 NC_015703.1 PFAM: Glycine cleavage H-protein; TIGRFAM: glycine cleavage system H protein; COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR006680:IPR004722; KEGG: dfe:Dfer_4467 dihydroorotase, multifunctional complex type; PFAM: Amidohydrolase 1; SPTR: Dihydroorotase, multifunctional complex type; TIGRFAM: Dihydroorotase multifunctional complex type; glycine cleavage system H protein 2022335 10870313 Runsl_1786 Runella slithyformis DSM 19594 glycine cleavage system H protein YP_004655342.1 2021958 D 761193 CDS YP_004655343.1 338211290 10870314 2022407..2023678 1 NC_015703.1 TIGRFAM: dihydroorotase, multifunctional complex type; KEGG: dfe:Dfer_4468 hypothetical protein; SPTR: uncharacterized protein; dihydroorotase, multifunctional complex type 2023678 10870314 Runsl_1787 Runella slithyformis DSM 19594 dihydroorotase, multifunctional complex type YP_004655343.1 2022407 D 761193 CDS YP_004655344.1 338211291 10870315 2023694..2024233 1 NC_015703.1 InterPro IPR001623; KEGG: sli:Slin_4457 hypothetical protein; PFAM: Heat shock protein DnaJ, N-terminal; SPTR: uncharacterized protein; hypothetical protein 2024233 10870315 Runsl_1788 Runella slithyformis DSM 19594 hypothetical protein YP_004655344.1 2023694 D 761193 CDS YP_004655345.1 338211292 10870316 2024238..2025338 1 NC_015703.1 PFAM: DnaJ domain; molecular chaperone DnaJ 2025338 10870316 Runsl_1789 Runella slithyformis DSM 19594 molecular chaperone DnaJ YP_004655345.1 2024238 D 761193 CDS YP_004655346.1 338211293 10870317 2025976..2026383 1 NC_015703.1 hypothetical protein 2026383 10870317 Runsl_1790 Runella slithyformis DSM 19594 hypothetical protein YP_004655346.1 2025976 D 761193 CDS YP_004655347.1 338211294 10870318 complement(2026393..2026515) 1 NC_015703.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_0982 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; hypothetical protein 2026515 10870318 Runsl_1791 Runella slithyformis DSM 19594 hypothetical protein YP_004655347.1 2026393 R 761193 CDS YP_004655348.1 338211295 10870319 2026553..2027635 1 NC_015703.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036:IPR004764; KEGG: dfe:Dfer_0981 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: Acriflavin resistance protein; SPTR: Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; RND family efflux transporter MFP subunit 2027635 10870319 Runsl_1792 Runella slithyformis DSM 19594 RND family efflux transporter MFP subunit YP_004655348.1 2026553 D 761193 CDS YP_004655349.1 338211296 10870320 2027713..2030868 1 NC_015703.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; COGs: COG1538 Outer membrane protein; InterPro IPR003423:IPR010131; KEGG: dfe:Dfer_0980 RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; SPTR: RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 2030868 10870320 Runsl_1793 Runella slithyformis DSM 19594 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_004655349.1 2027713 D 761193 CDS YP_004655350.1 338211297 10870321 2030873..2032297 1 NC_015703.1 PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; KEGG: sli:Slin_1064 hypothetical protein; SPTR: uncharacterized protein; NodT family RND efflux system outer membrane lipoprotein 2032297 10870321 Runsl_1794 Runella slithyformis DSM 19594 NodT family RND efflux system outer membrane lipoprotein YP_004655350.1 2030873 D 761193 CDS YP_004655351.1 338211298 10870322 2032383..2032832 1 NC_015703.1 manually curated; hypothetical protein 2032832 10870322 Runsl_1795 Runella slithyformis DSM 19594 hypothetical protein YP_004655351.1 2032383 D 761193 CDS YP_004655352.1 338211299 10870323 join(2032953..2033012,2033014..2034030) 1 NC_015703.1 PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2; KEGG: sli:Slin_4506 hypothetical protein; SPTR: uncharacterized protein; peptide chain release factor 2 2034030 10870323 Runsl_1796 Runella slithyformis DSM 19594 peptide chain release factor 2 YP_004655352.1 2032953 D 761193 CDS YP_004655353.1 338211300 10870324 complement(2034134..2035459) 1 NC_015703.1 PFAM: SusD family; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: sli:Slin_4505 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein 2035459 10870324 Runsl_1797 Runella slithyformis DSM 19594 hypothetical protein YP_004655353.1 2034134 R 761193 CDS YP_004655354.1 338211301 10870325 complement(2035481..2038666) 1 NC_015703.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR014036; KEGG: psn:Pedsa_1847 transcriptional regulator, DeoR family; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal; SPTR: Transcriptional regulator, DeoR family; TonB-dependent receptor plug 2038666 10870325 Runsl_1798 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004655354.1 2035481 R 761193 CDS YP_004655355.1 338211302 10870326 2038882..2039646 1 NC_015703.1 PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain; KEGG: dfe:Dfer_3742 hypothetical protein; SPTR: uncharacterized protein; DeoR family transcriptional regulator 2039646 10870326 Runsl_1799 Runella slithyformis DSM 19594 DeoR family transcriptional regulator YP_004655355.1 2038882 D 761193 CDS YP_004655356.1 338211303 10870327 complement(2039671..2040909) 1 NC_015703.1 COGs: COG0634 Hypoxanthine-guanine phosphoribosyltransferase; InterPro IPR000836:IPR005904; KEGG: dfe:Dfer_3743 hypoxanthine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; PRIAM: Hypoxanthine phosphoribosyltransferase; SPTR: Hypoxanthine phosphoribosyltransferase; TIGRFAM: Hypoxanthine phosphoribosyl transferase; hypothetical protein 2040909 10870327 Runsl_1800 Runella slithyformis DSM 19594 hypothetical protein YP_004655356.1 2039671 R 761193 CDS YP_004655357.1 338211304 10870328 2041006..2041536 1 NC_015703.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase; KEGG: dfe:Dfer_4235 hypothetical protein; SPTR: uncharacterized protein; hypoxanthine phosphoribosyltransferase 2041536 10870328 Runsl_1801 Runella slithyformis DSM 19594 hypoxanthine phosphoribosyltransferase YP_004655357.1 2041006 D 761193 CDS YP_004655358.1 338211305 10870329 2041583..2042191 1 NC_015703.1 COGs: COG0308 Aminopeptidase N; KEGG: sli:Slin_5083 aminopeptidase; SPTR: aminopeptidase; hypothetical protein 2042191 10870329 Runsl_1802 Runella slithyformis DSM 19594 hypothetical protein YP_004655358.1 2041583 D 761193 CDS YP_004655359.1 338211306 10870330 2042284..2044656 1 NC_015703.1 InterPro IPR000866; KEGG: sli:Slin_4277 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; aminopeptidase 2044656 10870330 Runsl_1803 Runella slithyformis DSM 19594 aminopeptidase YP_004655359.1 2042284 D 761193 CDS YP_004655360.1 338211307 10870331 2044787..2046166 1 NC_015703.1 PFAM: AhpC/TSA family; KEGG: dfe:Dfer_2635 hypothetical protein; SPTR: uncharacterized protein; alkyl hydroperoxide reductase 2046166 10870331 Runsl_1804 Runella slithyformis DSM 19594 alkyl hydroperoxide reductase YP_004655360.1 2044787 D 761193 CDS YP_004655361.1 338211308 10870332 complement(2046148..2046831) 1 NC_015703.1 KEGG: sli:Slin_0108 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2046831 10870332 Runsl_1805 Runella slithyformis DSM 19594 hypothetical protein YP_004655361.1 2046148 R 761193 CDS YP_004655362.1 338211309 10870333 2046983..2049013 1 NC_015703.1 COGs: COG4826 Serine protease inhibitor; InterPro IPR000215; KEGG: sli:Slin_5492 proteinase inhibitor I4 serpin; PFAM: Protease inhibitor I4, serpin; SMART: Protease inhibitor I4, serpin; SPTR: Proteinase inhibitor I4 serpin; hypothetical protein 2049013 10870333 Runsl_1806 Runella slithyformis DSM 19594 hypothetical protein YP_004655362.1 2046983 D 761193 CDS YP_004655363.1 338211310 10870334 complement(2049104..2050357) 1 NC_015703.1 PFAM: Serpin (serine protease inhibitor); COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: dfe:Dfer_3459 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; proteinase inhibitor I4 serpin 2050357 10870334 Runsl_1807 Runella slithyformis DSM 19594 proteinase inhibitor I4 serpin YP_004655363.1 2049104 R 761193 CDS YP_004655364.1 338211311 10870335 2050492..2051085 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: dfe:Dfer_3458 hypothetical protein; SPTR: uncharacterized protein; ECF subfamily RNA polymerase sigma-24 subunit 2051085 10870335 Runsl_1808 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004655364.1 2050492 D 761193 CDS YP_004655365.1 338211312 10870336 2051088..2051951 1 NC_015703.1 KEGG: dfe:Dfer_3457 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2051951 10870336 Runsl_1809 Runella slithyformis DSM 19594 hypothetical protein YP_004655365.1 2051088 D 761193 CDS YP_004655366.1 338211313 10870337 2051959..2053035 1 NC_015703.1 hypothetical protein 2053035 10870337 Runsl_1810 Runella slithyformis DSM 19594 hypothetical protein YP_004655366.1 2051959 D 761193 CDS YP_004655367.1 338211314 10870341 2053759..2054946 1 NC_015703.1 PFAM: Elongation factor Tu C-terminal domain; Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU; COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011622:IPR011712:IPR003594; KEGG: sli:Slin_6490 ATP-binding region ATPase domain protein; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; Diverse 7TM receptor, extracellular region 2; SPTR: ATP-binding region ATPase domain protein; translation elongation factor Tu 2054946 10870341 Runsl_1811 Runella slithyformis DSM 19594 translation elongation factor Tu YP_004655367.1 2053759 D 761193 CDS YP_004655368.1 338211315 10870342 2055046..2056926 1 NC_015703.1 PFAM: Histidine kinase; 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; 7TMR-DISM extracellular 2; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: sli:Slin_4881 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; signal transduction histidine kinase 2056926 10870342 Runsl_1812 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004655368.1 2055046 D 761193 CDS YP_004655369.1 338211316 10870343 2056965..2058173 1 NC_015703.1 PFAM: Major Facilitator Superfamily; TIGRFAM: Multidrug resistance protein; major facilitator superfamily protein 2058173 10870343 Runsl_1813 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004655369.1 2056965 D 761193 CDS YP_004655370.1 338211317 10870345 2058335..2058526 1 NC_015703.1 PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial; COGs: COG0250 Transcription antiterminator; InterPro IPR006645:IPR005824:IPR001062; KEGG: dfe:Dfer_3454 NusG antitermination factor; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; SMART: Transcription antitermination protein, NusG, N-terminal; KOW; SPTR: Transcription antitermination protein nusG; TIGRFAM: Transcription antitermination protein, NusG; preprotein translocase subunit SecE 2058526 10870345 Runsl_1814 Runella slithyformis DSM 19594 preprotein translocase subunit SecE YP_004655370.1 2058335 D 761193 CDS YP_004655371.1 338211318 10870346 2058563..2059117 1 NC_015703.1 PFAM: Transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG; COGs: COG0080 Ribosomal protein L11; InterPro IPR020784:IPR020783:IPR000911:IPR006519; KEGG: dfe:Dfer_3453 50S ribosomal protein L11; PFAM: Ribosomal protein L11, C-terminal; Ribosomal protein L11, N-terminal; SMART: Ribosomal protein L11; SPTR: 50S ribosomal protein L11; TIGRFAM: Ribosomal protein L11, bacterial-type; NusG antitermination factor 2059117 10870346 Runsl_1815 Runella slithyformis DSM 19594 NusG antitermination factor YP_004655371.1 2058563 D 761193 CDS YP_004655372.1 338211319 10870347 2059218..2059661 1 NC_015703.1 PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11; COGs: COG0081 Ribosomal protein L1; InterPro IPR002143:IPR005878; KEGG: dfe:Dfer_3452 50S ribosomal protein L1; PFAM: Ribosomal protein L1; SPTR: 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; 50S ribosomal protein L11 2059661 10870347 Runsl_1816 Runella slithyformis DSM 19594 50S ribosomal protein L11 YP_004655372.1 2059218 D 761193 CDS YP_004655373.1 338211320 10870348 2059693..2060391 1 NC_015703.1 PFAM: Ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast; COGs: COG0244 Ribosomal protein L10; HAMAP: 50S ribosomal protein L10; InterPro IPR001790; KEGG: sli:Slin_4479 ribosomal protein L10; PFAM: Ribosomal protein L10; SPTR: 50S ribosomal protein L10; manually curated; 50S ribosomal protein L1 2060391 10870348 Runsl_1817 Runella slithyformis DSM 19594 50S ribosomal protein L1 YP_004655373.1 2059693 D 761193 CDS YP_004655374.1 338211321 10870349 2060394..2060927 1 NC_015703.1 PFAM: Ribosomal protein L10; COGs: COG0222 Ribosomal protein L7/L12; HAMAP: Ribosomal protein L7/L12; InterPro IPR000206:IPR013823; KEGG: sli:Slin_4478 ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal; SPTR: 50S ribosomal protein L7/L12; TIGRFAM: Ribosomal protein L7/L12; 50S ribosomal protein L10 2060927 10870349 Runsl_1818 Runella slithyformis DSM 19594 50S ribosomal protein L10 YP_004655374.1 2060394 D 761193 CDS YP_004655375.1 338211322 10870350 2061042..2061422 1 NC_015703.1 PFAM: Ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12; COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; HAMAP: DNA-directed RNA polymerase subunit beta; InterProIPR007644:IPR007642:IPR007645:IPR019462:IPR 007120:IPR007641:IPR010243; KEGG: dfe:Dfer_3449 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 2; RNA polymerase, beta subunit, protrusion; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 7; SPTR: DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; 50S ribosomal protein L7/L12 2061422 10870350 Runsl_1819 Runella slithyformis DSM 19594 50S ribosomal protein L7/L12 YP_004655375.1 2061042 D 761193 CDS YP_004655376.1 338211323 10870351 2061713..2065672 1 NC_015703.1 PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit; COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; HAMAP: DNA-directed RNA polymerase subunit beta'; InterProIPR007080:IPR000722:IPR007066:IPR007083:IPR 007081:IPR006592:IPR012754; KEGG: dfe:Dfer_3448 DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5; SMART: RNA polymerase, N-terminal; SPTR: DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; DNA-directed RNA polymerase subunit beta 2065672 10870351 Runsl_1820 Runella slithyformis DSM 19594 DNA-directed RNA polymerase subunit beta YP_004655376.1 2061713 D 761193 CDS YP_004655377.1 338211324 10870352 2065709..2070079 1 NC_015703.1 PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 3; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form; COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015883; KEGG: sli:Slin_2031 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Beta-N-acetylhexosaminidase; DNA-directed RNA polymerase subunit beta' 2070079 10870352 Runsl_1821 Runella slithyformis DSM 19594 DNA-directed RNA polymerase subunit beta' YP_004655377.1 2065709 D 761193 CDS YP_004655378.1 338211325 10870353 2070218..2072527 1 NC_015703.1 PFAM: F5/8 type C domain; Glycosyl hydrolase 20, catalytic domain; Glycosyl hydrolase 20, domain 2; KEGG: fbc:FB2170_13081 cAMP-binding protein; SPTR: cAMP-binding protein-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; manually curated; beta-N-acetylhexosaminidase 2072527 10870353 Runsl_1822 Runella slithyformis DSM 19594 beta-N-acetylhexosaminidase YP_004655378.1 2070218 D 761193 CDS YP_004655379.1 338211326 10870354 2072625..2073137 1 NC_015703.1 cAMP-binding protein 2073137 10870354 Runsl_1823 Runella slithyformis DSM 19594 cAMP-binding protein YP_004655379.1 2072625 D 761193 CDS YP_004655380.1 338211327 10870355 2073315..2073959 1 NC_015703.1 InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3569 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; manually curated; hypothetical protein 2073959 10870355 Runsl_1824 Runella slithyformis DSM 19594 hypothetical protein YP_004655380.1 2073315 D 761193 CDS YP_004655381.1 338211328 10870356 2074309..2076669 1 NC_015703.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; KEGG: dfe:Dfer_3570 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 2076669 10870356 Runsl_1825 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004655381.1 2074309 D 761193 CDS YP_004655382.1 338211329 10870357 2076695..2077615 1 NC_015703.1 COGs: COG1119 ABC-type molybdenum transport system ATPase component/photorepair protein PhrA; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_2971 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; hypothetical protein 2077615 10870357 Runsl_1826 Runella slithyformis DSM 19594 hypothetical protein YP_004655382.1 2076695 D 761193 CDS YP_004655383.1 338211330 10870358 complement(2077703..2079244) 1 NC_015703.1 PFAM: ABC transporter; COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: sli:Slin_1392 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; PRIAM: (R)-benzylsuccinyl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase domain protein; ABC transporter 2079244 10870358 Runsl_1827 Runella slithyformis DSM 19594 ABC transporter YP_004655383.1 2077703 R 761193 CDS YP_004655384.1 338211331 10870359 2079391..2080608 1 NC_015703.1 PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; COGs: COG2968 conserved hypothetical protein; InterPro IPR007497; KEGG: dfe:Dfer_3934 protein of unknown function DUF541; PFAM: Protein of unknown function DUF541; SPTR: uncharacterized protein; (R)-benzylsuccinyl-CoA dehydrogenase 2080608 10870359 Runsl_1828 Runella slithyformis DSM 19594 (R)-benzylsuccinyl-CoA dehydrogenase YP_004655384.1 2079391 D 761193 CDS YP_004655385.1 338211332 10870360 complement(2080678..2081397) 1 NC_015703.1 PFAM: Protein of unknown function (DUF541); COGs: COG1649 conserved hypothetical protein; InterPro IPR003790:IPR003961; KEGG: psn:Pedsa_3319 protein of unknown function DUF187; PFAM: Protein of unknown function DUF187; Fibronectin, type III; SMART: Fibronectin, type III; SPTR: uncharacterized protein; hypothetical protein 2081397 10870360 Runsl_1829 Runella slithyformis DSM 19594 hypothetical protein YP_004655385.1 2080678 R 761193 CDS YP_004655386.1 338211333 10870361 complement(2081474..2083411) 1 NC_015703.1 PFAM: Uncharacterised BCR, COG1649; Fibronectin type III domain; SPTR: Predicted protein; hypothetical protein 2083411 10870361 Runsl_1830 Runella slithyformis DSM 19594 hypothetical protein YP_004655386.1 2081474 R 761193 CDS YP_004655387.1 338211334 10870362 complement(2083841..2085700) 1 NC_015703.1 PFAM: Response regulator receiver domain; hypothetical protein 2085700 10870362 Runsl_1831 Runella slithyformis DSM 19594 hypothetical protein YP_004655387.1 2083841 R 761193 CDS YP_004655388.1 338211335 10870363 complement(2085684..2086229) 1 NC_015703.1 InterPro IPR000477; KEGG: cyt:cce_1086 RNA-directed DNA polymerase; PFAM: RNA-directed DNA polymerase (reverse transcriptase); PRIAM: RNA-directed DNA polymerase; SPTR: Probable RNA-directed DNA polymerase; hypothetical protein 2086229 10870363 Runsl_1832 Runella slithyformis DSM 19594 hypothetical protein YP_004655388.1 2085684 R 761193 CDS YP_004655389.1 338211336 10870364 complement(2086233..2088230) 1 NC_015703.1 PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); RNA-directed DNA polymerase 2088230 10870364 Runsl_1833 Runella slithyformis DSM 19594 RNA-directed DNA polymerase YP_004655389.1 2086233 R 761193 CDS YP_004655390.1 338211337 10870365 complement(2088493..2088723) 1 NC_015703.1 COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; KEGG: rbi:RB2501_07070 helicase; SPTR: Helicase; hypothetical protein 2088723 10870365 Runsl_1834 Runella slithyformis DSM 19594 hypothetical protein YP_004655390.1 2088493 R 761193 CDS YP_004655391.1 338211338 10870366 complement(2088760..2090109) 1 NC_015703.1 PFAM: PIF1 helicase; COGs: COG2378 transcriptional regulator protein; InterPro IPR013196; KEGG: cly:Celly_1289 transcriptional regulator-like protein; SPTR: uncharacterized protein; helicase 2090109 10870366 Runsl_1835 Runella slithyformis DSM 19594 helicase YP_004655391.1 2088760 R 761193 CDS YP_004655392.1 338211339 10870367 2090217..2091197 1 NC_015703.1 PFAM: HTH domain; KEGG: bth:BT_1796 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2091197 10870367 Runsl_1836 Runella slithyformis DSM 19594 hypothetical protein YP_004655392.1 2090217 D 761193 CDS YP_004655393.1 338211340 10870368 complement(2091249..2093840) 1 NC_015703.1 COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: dfe:Dfer_4619 protein of unknown function DUF433; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein; hypothetical protein 2093840 10870368 Runsl_1837 Runella slithyformis DSM 19594 hypothetical protein YP_004655393.1 2091249 R 761193 CDS YP_004655394.1 338211341 10870369 complement(2094128..2094373) 1 NC_015703.1 PFAM: Protein of unknown function (DUF433); COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: dfe:Dfer_3947 aminopeptidase precursor; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; SPTR: Aminopeptidase; hypothetical protein 2094373 10870369 Runsl_1838 Runella slithyformis DSM 19594 hypothetical protein YP_004655394.1 2094128 R 761193 CDS YP_004655395.1 338211342 10870370 complement(2094483..2096462) 1 NC_015703.1 PFAM: Peptidase M1; COGs: COG0523 GTPase (G3E family); InterPro IPR003495:IPR011629; KEGG: rba:RB13094 cobalamin synthesis protein CobW; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SPTR: uncharacterized protein; peptidase M1 membrane alanine aminopeptidase 2096462 10870370 Runsl_1839 Runella slithyformis DSM 19594 peptidase M1 membrane alanine aminopeptidase YP_004655395.1 2094483 R 761193 CDS YP_004655396.1 338211343 10870371 2096749..2097771 1 NC_015703.1 PFAM: Cobalamin synthesis protein cobW C-terminal domain; CobW/HypB/UreG, nucleotide-binding domain; SPTR: Membrane protein; cobalamin synthesis protein P47K 2097771 10870371 Runsl_1840 Runella slithyformis DSM 19594 cobalamin synthesis protein P47K YP_004655396.1 2096749 D 761193 CDS YP_004655397.1 338211344 10870372 2097776..2099089 1 NC_015703.1 InterPro IPR013517; KEGG: sli:Slin_4333 FG-GAP repeat protein; PFAM: FG-GAP; SPTR: FG-GAP repeat protein; hypothetical protein 2099089 10870372 Runsl_1841 Runella slithyformis DSM 19594 hypothetical protein YP_004655397.1 2097776 D 761193 CDS YP_004655398.1 338211345 10870373 complement(2099009..2101363) 1 NC_015703.1 PFAM: FG-GAP repeat; COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: ppr:PBPRB1472 hypothetical protein; PFAM: Patatin; SPTR: uncharacterized protein PG1879; hypothetical protein 2101363 10870373 Runsl_1842 Runella slithyformis DSM 19594 hypothetical protein YP_004655398.1 2099009 R 761193 CDS YP_004655399.1 338211346 10870374 2101408..2102493 1 NC_015703.1 PFAM: Patatin-like phospholipase; COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834:IPR011951:IPR006439; KEGG: dfe:Dfer_3624 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB; HAD-superfamily hydrolase, subfamily IA, variant 1; patatin 2102493 10870374 Runsl_1843 Runella slithyformis DSM 19594 patatin YP_004655399.1 2101408 D 761193 CDS YP_004655400.1 338211347 10870375 complement(2102482..2103180) 1 NC_015703.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; HAD superfamily (subfamily IA) hydrolase, TIGR02254; COGs: COG3217 Uncharacterized Fe-S protein; InterPro IPR005303:IPR005302; KEGG: dfe:Dfer_3013 MOSC domain containing protein; PFAM: Molybdenum cofactor sulfurase, C-terminal; MOSC, N-terminal beta barrel; SPTR: MOSC domain containing protein; HAD superfamily hydrolase 2103180 10870375 Runsl_1844 Runella slithyformis DSM 19594 HAD superfamily hydrolase YP_004655400.1 2102482 R 761193 CDS YP_004655401.1 338211348 10870376 2103216..2104055 1 NC_015703.1 PFAM: MOSC N-terminal beta barrel domain; MOSC domain; COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR002937:IPR014105; KEGG: mtt:Ftrac_1976 phytoene desaturase; PFAM: Amine oxidase; SPTR: phytoene dehydrogenase; TIGRFAM: Zeta-phytoene desaturase; MOSC domain-containing protein 2104055 10870376 Runsl_1845 Runella slithyformis DSM 19594 MOSC domain-containing protein YP_004655401.1 2103216 D 761193 CDS YP_004655402.1 338211349 10870377 2104058..2105560 1 NC_015703.1 PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase; InterPro IPR019861; KEGG: phe:Phep_1531 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; phytoene desaturase 2105560 10870377 Runsl_1846 Runella slithyformis DSM 19594 phytoene desaturase YP_004655402.1 2104058 D 761193 CDS YP_004655403.1 338211350 10870378 2105747..2106739 1 NC_015703.1 PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein; COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154:IPR013149; KEGG: dfe:Dfer_3686 alcohol dehydrogenase zinc-binding domain protein; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SPTR: Alcohol dehydrogenase zinc-binding domain protein; hypothetical protein 2106739 10870378 Runsl_1847 Runella slithyformis DSM 19594 hypothetical protein YP_004655403.1 2105747 D 761193 CDS YP_004655404.1 338211351 10870379 2106839..2107852 1 NC_015703.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; COGs: COG0820 Fe-S-cluster redox enzyme; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; InterPro IPR004383:IPR007197; KEGG: dfe:Dfer_4731 radical SAM enzyme, Cfr family; PFAM: Radical SAM; SPTR: Ribosomal RNA large subunit methyltransferase N; TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; NADPH:quinone reductase 2107852 10870379 Runsl_1848 Runella slithyformis DSM 19594 NADPH:quinone reductase YP_004655404.1 2106839 D 761193 CDS YP_004655405.1 338211352 10870380 2107929..2108990 1 NC_015703.1 PFAM: Radical SAM superfamily; TIGRFAM: 23S rRNA m2A2503 methyltransferase; ribosomal RNA large subunit methyltransferase N 2108990 10870380 Runsl_1849 Runella slithyformis DSM 19594 ribosomal RNA large subunit methyltransferase N YP_004655405.1 2107929 D 761193 CDS YP_004655406.1 338211353 10870381 complement(2109105..2109752) 1 NC_015703.1 InterPro IPR000462; KEGG: mtt:Ftrac_0505 cdp-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-alcohol phosphatidyltransferase; hypothetical protein 2109752 10870381 Runsl_1850 Runella slithyformis DSM 19594 hypothetical protein YP_004655406.1 2109105 R 761193 CDS YP_004655407.1 338211354 10870382 2110001..2110768 1 NC_015703.1 PFAM: CDP-alcohol phosphatidyltransferase; SPTR: integron gene cassette protein; CDP-alcohol phosphatidyltransferase 2110768 10870382 Runsl_1851 Runella slithyformis DSM 19594 CDP-alcohol phosphatidyltransferase YP_004655407.1 2110001 D 761193 CDS YP_004655408.1 338211355 10870383 complement(2110770..2111117) 1 NC_015703.1 COGs: COG0338 Site-specific DNA methylase; InterPro IPR012327; KEGG: chl:Chy400_0781 D12 class N6 adenine-specific DNA methyltransferase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; SPTR: D12 class N6 adenine-specific DNA methyltransferase; hypothetical protein 2111117 10870383 Runsl_1852 Runella slithyformis DSM 19594 hypothetical protein YP_004655408.1 2110770 R 761193 CDS YP_004655409.1 338211356 10870384 2111770..2112738 1 NC_015703.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: eel:EUBELI_01764 hypothetical protein; SPTR: uncharacterized protein; D12 class N6 adenine-specific DNA methyltransferase 2112738 10870384 Runsl_1853 Runella slithyformis DSM 19594 D12 class N6 adenine-specific DNA methyltransferase YP_004655409.1 2111770 D 761193 CDS YP_004655410.1 338211357 10870385 2112775..2114823 1 NC_015703.1 PFAM: Domain of unknown function DUF87; KEGG: eel:EUBELI_01763 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2114823 10870385 Runsl_1854 Runella slithyformis DSM 19594 hypothetical protein YP_004655410.1 2112775 D 761193 CDS YP_004655411.1 338211358 10870386 2114823..2116202 1 NC_015703.1 KEGG: dfe:Dfer_1363 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2116202 10870386 Runsl_1855 Runella slithyformis DSM 19594 hypothetical protein YP_004655411.1 2114823 D 761193 CDS YP_004655412.1 338211359 10870387 2116278..2117099 1 NC_015703.1 KEGG: dfe:Dfer_1364 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2117099 10870387 Runsl_1856 Runella slithyformis DSM 19594 hypothetical protein YP_004655412.1 2116278 D 761193 CDS YP_004655413.1 338211360 10870388 2117096..2117932 1 NC_015703.1 PFAM: Protein of unknown function (DUF3037); COGs: COG3537 alpha-1 2-mannosidase; InterPro IPR012939:IPR005887; KEGG: dfe:Dfer_4808 alpha-1,2-mannosidase; PFAM: Glycosyl hydrolase 92; SPTR: Alpha-1,2-mannosidase; TIGRFAM: Alpha-1,2-mannosidase; hypothetical protein 2117932 10870388 Runsl_1857 Runella slithyformis DSM 19594 hypothetical protein YP_004655413.1 2117096 D 761193 CDS YP_004655414.1 338211361 10870389 complement(2118040..2120322) 1 NC_015703.1 PFAM: Glycosyl hydrolase 92; TIGRFAM: alpha-1,2-mannosidase, KEGG: sli:Slin_1398 hypothetical protein; SPTR: uncharacterized protein; alpha-1,2-mannosidase 2120322 10870389 Runsl_1858 Runella slithyformis DSM 19594 alpha-1,2-mannosidase YP_004655414.1 2118040 R 761193 CDS YP_004655415.1 338211362 10870390 complement(2120363..2122738) 1 NC_015703.1 COGs: COG1430 conserved hypothetical protein; InterPro IPR003795; KEGG: dfe:Dfer_3905 protein of unknown function DUF192; PFAM: Protein of unknown function DUF192; SPTR: uncharacterized protein; hypothetical protein 2122738 10870390 Runsl_1859 Runella slithyformis DSM 19594 hypothetical protein YP_004655415.1 2120363 R 761193 CDS YP_004655416.1 338211363 10870391 complement(2122876..2123415) 1 NC_015703.1 PFAM: Uncharacterized ACR, COG1430; COGs: COG0215 Cysteinyl-tRNA synthetase; InterPro IPR015803:IPR015273:IPR002308; KEGG: lby:Lbys_2875 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia, N-terminal; Cysteinyl-tRNA synthetase, class Ia, DALR; PRIAM: Cysteine--tRNA ligase; SPTR: Cysteinyl-tRNA synthetase; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; hypothetical protein 2123415 10870391 Runsl_1860 Runella slithyformis DSM 19594 hypothetical protein YP_004655416.1 2122876 R 761193 CDS YP_004655417.1 338211364 10870392 complement(2123469..2125004) 1 NC_015703.1 PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase; COGs: COG0572 Uridine kinase; InterPro IPR006083; KEGG: sli:Slin_5127 phosphoribulokinase/uridine kinase; PFAM: Phosphoribulokinase/uridine kinase; PRIAM: Uridine kinase; SPTR: Uridine kinase; cysteinyl-tRNA synthetase 2125004 10870392 Runsl_1861 Runella slithyformis DSM 19594 cysteinyl-tRNA synthetase YP_004655417.1 2123469 R 761193 CDS YP_004655418.1 338211365 10870393 2125211..2125831 1 NC_015703.1 PFAM: Phosphoribulokinase / Uridine kinase; TIGRFAM: uridine kinase; KEGG: sli:Slin_6388 hypothetical protein; SPTR: uncharacterized protein; uridine kinase 2125831 10870393 Runsl_1862 Runella slithyformis DSM 19594 uridine kinase YP_004655418.1 2125211 D 761193 CDS YP_004655419.1 338211366 10870394 complement(2125850..2126071) 1 NC_015703.1 PFAM: PspC domain; COGs: COG1278 Cold shock protein; InterPro IPR011129:IPR002059; KEGG: dfe:Dfer_4008 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding domain protein; hypothetical protein 2126071 10870394 Runsl_1863 Runella slithyformis DSM 19594 hypothetical protein YP_004655419.1 2125850 R 761193 CDS YP_004655420.1 338211367 10870395 2126370..2126564 1 NC_015703.1 PFAM: 'Cold-shock' DNA-binding domain; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: sli:Slin_5816 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein; cold-shock DNA-binding domain-containing protein 2126564 10870395 Runsl_1864 Runella slithyformis DSM 19594 cold-shock DNA-binding domain-containing protein YP_004655420.1 2126370 D 761193 CDS YP_004655421.1 338211368 10870396 complement(2126692..2127882) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; KEGG: dfe:Dfer_4047 hypothetical protein; SPTR: uncharacterized protein; oxidoreductase domain-containing protein 2127882 10870396 Runsl_1865 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004655421.1 2126692 R 761193 CDS YP_004655422.1 338211369 10870397 2127991..2128536 1 NC_015703.1 KEGG: dfe:Dfer_4046 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2128536 10870397 Runsl_1866 Runella slithyformis DSM 19594 hypothetical protein YP_004655422.1 2127991 D 761193 CDS YP_004655423.1 338211370 10870398 2128555..2129031 1 NC_015703.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR003593:IPR011703; KEGG: sli:Slin_4963 ATPase AAA; PFAM: ATPase associated with various cellular activities, AAA-3; SMART: ATPase, AAA+ type, core; SPTR: ATPase associated with various cellular activities AAA_3; hypothetical protein 2129031 10870398 Runsl_1867 Runella slithyformis DSM 19594 hypothetical protein YP_004655423.1 2128555 D 761193 CDS YP_004655424.1 338211371 10870399 complement(2129108..2130079) 1 NC_015703.1 PFAM: ATPase associated with various cellular activities (AAA); KEGG: sli:Slin_4962 hypothetical protein; SPTR: uncharacterized protein; manually curated; ATPase 2130079 10870399 Runsl_1868 Runella slithyformis DSM 19594 ATPase YP_004655424.1 2129108 R 761193 CDS YP_004655425.1 338211372 10870400 complement(2130123..2131313) 1 NC_015703.1 KEGG: sli:Slin_4961 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2131313 10870400 Runsl_1869 Runella slithyformis DSM 19594 hypothetical protein YP_004655425.1 2130123 R 761193 CDS YP_004655426.1 338211373 10870401 complement(2131343..2132071) 1 NC_015703.1 InterPro IPR003088; KEGG: sli:Slin_3134 cytochrome c, class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c, class I; hypothetical protein 2132071 10870401 Runsl_1870 Runella slithyformis DSM 19594 hypothetical protein YP_004655426.1 2131343 R 761193 CDS YP_004655427.1 338211374 10870402 complement(2132210..2132551) 1 NC_015703.1 COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: sli:Slin_1058 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; cytochrome c class I 2132551 10870402 Runsl_1871 Runella slithyformis DSM 19594 cytochrome c class I YP_004655427.1 2132210 R 761193 CDS YP_004655428.1 338211375 10870403 complement(2132654..2133961) 1 NC_015703.1 PFAM: Major Facilitator Superfamily; COGs: COG2137 conserved hypothetical protein; HAMAP: Regulatory protein recX; InterPro IPR003783; KEGG: sli:Slin_5048 regulatory protein RecX; PFAM: Regulatory protein RecX; SPTR: Regulatory protein recX; major facilitator superfamily protein 2133961 10870403 Runsl_1872 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004655428.1 2132654 R 761193 CDS YP_004655429.1 338211376 10870404 2134079..2134546 1 NC_015703.1 PFAM: RecX family; KEGG: mba:Mbar_A2047 hypothetical protein; SPTR: uncharacterized protein; Regulatory protein recX 2134546 10870404 Runsl_1873 Runella slithyformis DSM 19594 Regulatory protein recX YP_004655429.1 2134079 D 761193 CDS YP_004655430.1 338211377 10870405 2134558..2135478 1 NC_015703.1 COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: sli:Slin_4513 hypothetical protein; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein; hypothetical protein 2135478 10870405 Runsl_1874 Runella slithyformis DSM 19594 hypothetical protein YP_004655430.1 2134558 D 761193 CDS YP_004655431.1 338211378 10870406 2135560..2135802 1 NC_015703.1 PFAM: Protein of unknown function (DUF433); COGs: COG4634 conserved hypothetical protein; KEGG: sli:Slin_4512 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2135802 10870406 Runsl_1875 Runella slithyformis DSM 19594 hypothetical protein YP_004655431.1 2135560 D 761193 CDS YP_004655432.1 338211379 10870407 2135809..2136171 1 NC_015703.1 PFAM: Protein of unknown function DUF82; COGs: COG0165 Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; InterPro IPR009049:IPR000362; KEGG: sli:Slin_0375 argininosuccinate lyase; PFAM: Fumarate lyase; PRIAM: Argininosuccinate lyase; SPTR: Argininosuccinate lyase; TIGRFAM: Argininosuccinate lyase; hypothetical protein 2136171 10870407 Runsl_1876 Runella slithyformis DSM 19594 hypothetical protein YP_004655432.1 2135809 D 761193 CDS YP_004655433.1 338211380 10870408 complement(2136176..2137510) 1 NC_015703.1 PFAM: Lyase; TIGRFAM: argininosuccinate lyase; KEGG: fjo:Fjoh_0943 hypothetical protein; SPTR: uncharacterized protein; argininosuccinate lyase 2137510 10870408 Runsl_1877 Runella slithyformis DSM 19594 argininosuccinate lyase YP_004655433.1 2136176 R 761193 CDS YP_004655434.1 338211381 10870409 complement(2137544..2137945) 1 NC_015703.1 KEGG: dfe:Dfer_4021 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2137945 10870409 Runsl_1878 Runella slithyformis DSM 19594 hypothetical protein YP_004655434.1 2137544 R 761193 CDS YP_004655435.1 338211382 10870410 complement(2138003..2138587) 1 NC_015703.1 hypothetical protein 2138587 10870410 Runsl_1879 Runella slithyformis DSM 19594 hypothetical protein YP_004655435.1 2138003 R 761193 CDS YP_004655436.1 338211383 10870411 2138888..2139169 1 NC_015703.1 hypothetical protein 2139169 10870411 Runsl_1880 Runella slithyformis DSM 19594 hypothetical protein YP_004655436.1 2138888 D 761193 CDS YP_004655437.1 338211384 10870412 2139220..2139657 1 NC_015703.1 COGs: COG0308 Aminopeptidase N; KEGG: sli:Slin_5083 aminopeptidase; SPTR: aminopeptidase; hypothetical protein 2139657 10870412 Runsl_1881 Runella slithyformis DSM 19594 hypothetical protein YP_004655437.1 2139220 D 761193 CDS YP_004655438.1 338211385 10870413 complement(2139800..2142190) 1 NC_015703.1 PFAM: Peptidase M1; COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; InterPro IPR004680; KEGG: gpb:HDN1F_23920 hypothetical protein; PFAM: Divalent ion symporter; SPTR: uncharacterized protein; aminopeptidase 2142190 10870413 Runsl_1882 Runella slithyformis DSM 19594 aminopeptidase YP_004655438.1 2139800 R 761193 CDS YP_004655439.1 338211386 10870414 2142316..2143632 1 NC_015703.1 PFAM: Citrate transporter; KEGG: dfe:Dfer_4871 hypothetical protein; SPTR: uncharacterized protein; citrate transporter 2143632 10870414 Runsl_1883 Runella slithyformis DSM 19594 citrate transporter YP_004655439.1 2142316 D 761193 CDS YP_004655440.1 338211387 10870415 2143740..2144780 1 NC_015703.1 COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005835:IPR005907; KEGG: sli:Slin_5841 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Glucose-1-phosphate thymidylyltransferase; SPTR: Glucose-1-phosphate thymidylyltransferase; TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; hypothetical protein 2144780 10870415 Runsl_1884 Runella slithyformis DSM 19594 hypothetical protein YP_004655440.1 2143740 D 761193 CDS YP_004655441.1 338211388 10870416 2145113..2145973 1 NC_015703.1 PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form; COGs: COG0307 Riboflavin synthase alpha chain; InterPro IPR001783; KEGG: dfe:Dfer_2926 riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; PRIAM: Riboflavin synthase; SPTR: Riboflavin synthase, alpha subunit; TIGRFAM: Lumazine-binding protein; glucose-1-phosphate thymidylyltransferase 2145973 10870416 Runsl_1885 Runella slithyformis DSM 19594 glucose-1-phosphate thymidylyltransferase YP_004655441.1 2145113 D 761193 CDS YP_004655442.1 338211389 10870417 2146051..2146641 1 NC_015703.1 PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit; KEGG: fjo:Fjoh_1375 hypothetical protein; SPTR: uncharacterized protein; riboflavin synthase subunit alpha 2146641 10870417 Runsl_1886 Runella slithyformis DSM 19594 riboflavin synthase subunit alpha YP_004655442.1 2146051 D 761193 CDS YP_004655443.1 338211390 10870418 2146674..2147060 1 NC_015703.1 COGs: COG0366 Glycosidase; InterPro IPR006589:IPR006047; KEGG: sli:Slin_0347 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; SPTR: Alpha amylase catalytic region; hypothetical protein 2147060 10870418 Runsl_1887 Runella slithyformis DSM 19594 hypothetical protein YP_004655443.1 2146674 D 761193 CDS YP_004655444.1 338211391 10870419 2147152..2148618 1 NC_015703.1 PFAM: Alpha amylase, catalytic domain; COGs: COG0621 2-methylthioadenine synthetase; HAMAP: Ribosomal protein S12 methylthiotransferase RimO; InterProIPR005840:IPR006638:IPR013848:IPR007197:IPR 005839; KEGG: dfe:Dfer_3605 MiaB-like tRNA modifying enzyme YliG; PFAM: Methylthiotransferase, N-terminal; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: MiaB-like tRNA modifying enzyme YliG; TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO; Methylthiotransferase; alpha amylase 2148618 10870419 Runsl_1888 Runella slithyformis DSM 19594 alpha amylase YP_004655444.1 2147152 D 761193 CDS YP_004655445.1 338211392 10870420 2148987..2150294 1 NC_015703.1 PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: ribosomal protein S12 methylthiotransferase RimO; radical SAM methylthiotransferase, MiaB/RimO family; KEGG: dfe:Dfer_4485 oxidoreductase; SPTR: oxidoreductase; 30S ribosomal protein S12 methylthiotransferase 2150294 10870420 Runsl_1889 Runella slithyformis DSM 19594 30S ribosomal protein S12 methylthiotransferase YP_004655445.1 2148987 D 761193 CDS YP_004655446.1 338211393 10870421 complement(2150348..2151712) 1 NC_015703.1 COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; InterPro IPR006148; KEGG: dfe:Dfer_4486 glucosamine/galactosamine-6-phosphate isomerase; PFAM: Glucosamine/galactosamine-6-phosphate isomerase; PRIAM: Glucosamine-6-phosphate deaminase; SPTR: Glucosamine/galactosamine-6-phosphate isomerase; oxidoreductase 2151712 10870421 Runsl_1890 Runella slithyformis DSM 19594 oxidoreductase YP_004655446.1 2150348 R 761193 CDS YP_004655447.1 338211394 10870422 complement(2151765..2152559) 1 NC_015703.1 PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; COGs: COG1820 N-acetylglucosamine-6-phosphate deacetylase; InterPro IPR006680:IPR003764; KEGG: dfe:Dfer_4487 N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase 1; PRIAM: N-acetylglucosamine-6-phosphate deacetylase; SPTR: N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; glucosamine-6-phosphate deaminase 2152559 10870422 Runsl_1891 Runella slithyformis DSM 19594 glucosamine-6-phosphate deaminase YP_004655447.1 2151765 R 761193 CDS YP_004655448.1 338211395 10870423 complement(2152669..2153844) 1 NC_015703.1 PFAM: Amidohydrolase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; COGs: COG0738 Fucose permease; InterPro IPR011701:IPR005964; KEGG: dfe:Dfer_4488 glucose/galactose transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Glucose/galactose transporter; TIGRFAM: Bacterial glucose/galactose transporter; N-acetylglucosamine-6-phosphate deacetylase 2153844 10870423 Runsl_1892 Runella slithyformis DSM 19594 N-acetylglucosamine-6-phosphate deacetylase YP_004655448.1 2152669 R 761193 CDS YP_004655449.1 338211396 10870424 complement(2154054..2155376) 1 NC_015703.1 PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: dfe:Dfer_4489 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; glucose/galactose transporter 2155376 10870424 Runsl_1893 Runella slithyformis DSM 19594 glucose/galactose transporter YP_004655449.1 2154054 R 761193 CDS YP_004655450.1 338211397 10870425 complement(2155528..2156895) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; KEGG: sli:Slin_0601 hypothetical protein; SPTR: uncharacterized protein; oxidoreductase domain-containing protein 2156895 10870425 Runsl_1894 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004655450.1 2155528 R 761193 CDS YP_004655451.1 338211398 10870426 complement(2157220..2158512) 1 NC_015703.1 KEGG: sli:Slin_0601 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2158512 10870426 Runsl_1895 Runella slithyformis DSM 19594 hypothetical protein YP_004655451.1 2157220 R 761193 CDS YP_004655452.1 338211399 10870427 complement(2158565..2158888) 1 NC_015703.1 KEGG: sli:Slin_0602 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2158888 10870427 Runsl_1896 Runella slithyformis DSM 19594 hypothetical protein YP_004655452.1 2158565 R 761193 CDS YP_004655453.1 338211400 10870428 complement(2159251..2160597) 1 NC_015703.1 PFAM: Neutral/alkaline non-lysosomal ceramidase; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653:IPR006311; KEGG: sli:Slin_0603 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase; hypothetical protein 2160597 10870428 Runsl_1897 Runella slithyformis DSM 19594 hypothetical protein YP_004655453.1 2159251 R 761193 CDS YP_004655454.1 338211401 10870429 complement(2160594..2161985) 1 NC_015703.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: sli:Slin_0604 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; glutamine--scyllo-inositol transaminase 2161985 10870429 Runsl_1898 Runella slithyformis DSM 19594 glutamine--scyllo-inositol transaminase YP_004655454.1 2160594 R 761193 CDS YP_004655455.1 338211402 10870430 complement(2162082..2163095) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_0608 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; oxidoreductase domain-containing protein 2163095 10870430 Runsl_1899 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004655455.1 2162082 R 761193 CDS YP_004655456.1 338211403 10870431 2163174..2163992 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: sli:Slin_0605 alpha-N-acetylgalactosaminidase; PFAM: Oxidoreductase, N-terminal; PRIAM: Alpha-N-acetylgalactosaminidase; SPTR: Alpha-N-acetylgalactosaminidase; 3-oxoacyl-ACP reductase 2163992 10870431 Runsl_1900 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004655456.1 2163174 D 761193 CDS YP_004655457.1 338211404 10870432 2164005..2165426 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG4760 membrane protein; InterPro IPR010539; KEGG: gym:GYMC10_6220 protein of unknown function DUF1112; PFAM: Protein of unknown function DUF1112; SPTR: uncharacterized protein; alpha-N-acetylgalactosaminidase 2165426 10870432 Runsl_1901 Runella slithyformis DSM 19594 alpha-N-acetylgalactosaminidase YP_004655457.1 2164005 D 761193 CDS YP_004655458.1 338211405 10870433 2165552..2166286 1 NC_015703.1 InterPro IPR012910:IPR000531; KEGG: sli:Slin_6039 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein 2166286 10870433 Runsl_1902 Runella slithyformis DSM 19594 hypothetical protein YP_004655458.1 2165552 D 761193 CDS YP_004655459.1 338211406 10870434 2166769..2169870 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: sli:Slin_6040 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 2169870 10870434 Runsl_1903 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004655459.1 2166769 D 761193 CDS YP_004655460.1 338211407 10870435 2169982..2171442 1 NC_015703.1 COGs: COG2355 Zn-dependent dipeptidase microsomal dipeptidase homolog; InterPro IPR008257; KEGG: sli:Slin_6456 membrane dipeptidase; PFAM: Peptidase M19, renal dipeptidase; PRIAM: Membrane dipeptidase; SPTR: Membrane dipeptidase; hypothetical protein 2171442 10870435 Runsl_1904 Runella slithyformis DSM 19594 hypothetical protein YP_004655460.1 2169982 D 761193 CDS YP_004655461.1 338211408 10870436 2171563..2172822 1 NC_015703.1 PFAM: Membrane dipeptidase (Peptidase M19); KEGG: dfe:Dfer_4404 hypothetical protein; SPTR: uncharacterized protein; membrane dipeptidase 2172822 10870436 Runsl_1905 Runella slithyformis DSM 19594 membrane dipeptidase YP_004655461.1 2171563 D 761193 CDS YP_004655462.1 338211409 10870437 complement(2173021..2175435) 1 NC_015703.1 KEGG: dfe:Dfer_4403 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2175435 10870437 Runsl_1906 Runella slithyformis DSM 19594 hypothetical protein YP_004655462.1 2173021 R 761193 CDS YP_004655463.1 338211410 10870438 complement(2175447..2176565) 1 NC_015703.1 InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_4401 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; hypothetical protein 2176565 10870438 Runsl_1907 Runella slithyformis DSM 19594 hypothetical protein YP_004655463.1 2175447 R 761193 CDS YP_004655464.1 338211411 10870439 complement(2176594..2179353) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; KEGG: dfe:Dfer_4400 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor 2179353 10870439 Runsl_1908 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004655464.1 2176594 R 761193 CDS YP_004655465.1 338211412 10870440 complement(2179350..2180078) 1 NC_015703.1 COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR011659:IPR006680; KEGG: gfo:GFO_0308 WD-40-like repeat-containing amidohydrolase; PFAM: Amidohydrolase 1; WD40-like Beta Propeller; SPTR: WD40-like repeat/amidohydrolase domain protein; hypothetical protein 2180078 10870440 Runsl_1909 Runella slithyformis DSM 19594 hypothetical protein YP_004655465.1 2179350 R 761193 CDS YP_004655466.1 338211413 10870441 complement(2180216..2183488) 1 NC_015703.1 PFAM: WD40-like Beta Propeller Repeat; Amidohydrolase; COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: mtt:Ftrac_0734 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; amidohydrolase 2183488 10870441 Runsl_1910 Runella slithyformis DSM 19594 amidohydrolase YP_004655466.1 2180216 R 761193 CDS YP_004655467.1 338211414 10870442 complement(2183622..2184722) 1 NC_015703.1 PFAM: Bacterial regulatory proteins, lacI family; family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_0106 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; LacI family transcriptional regulator 2184722 10870442 Runsl_1911 Runella slithyformis DSM 19594 LacI family transcriptional regulator YP_004655467.1 2183622 R 761193 CDS YP_004655468.1 338211415 10870443 2184902..2187916 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: shg:Sph21_2836 RagB/SusD domain-containing protein; PFAM: RagB/SusD; SPTR: outer membrane protein; TonB-dependent receptor plug 2187916 10870443 Runsl_1912 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004655468.1 2184902 D 761193 CDS YP_004655469.1 338211416 10870444 2187941..2189413 1 NC_015703.1 PFAM: SusD family; KEGG: gau:GAU_0690 hypothetical protein; SPTR: uncharacterized protein; RagB/SusD domain-containing protein 2189413 10870444 Runsl_1913 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004655469.1 2187941 D 761193 CDS YP_004655470.1 338211417 10870445 2189488..2191644 1 NC_015703.1 InterPro IPR011459; KEGG: cyn:Cyan7425_0816 hypothetical protein; PFAM: Protein of unknown function DUF1565; SPTR: uncharacterized protein; hypothetical protein 2191644 10870445 Runsl_1914 Runella slithyformis DSM 19594 hypothetical protein YP_004655470.1 2189488 D 761193 CDS YP_004655471.1 338211418 10870446 2191659..2194265 1 NC_015703.1 PFAM: Protein of unknown function (DUF1565); Calx-beta domain; KEGG: mts:MTES_1113 ERCC4-like helicase; SPTR: Predicted protein; hypothetical protein 2194265 10870446 Runsl_1915 Runella slithyformis DSM 19594 hypothetical protein YP_004655471.1 2191659 D 761193 CDS YP_004655472.1 338211419 10870447 2194302..2196419 1 NC_015703.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: phe:Phep_2599 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; hypothetical protein 2196419 10870447 Runsl_1916 Runella slithyformis DSM 19594 hypothetical protein YP_004655472.1 2194302 D 761193 CDS YP_004655473.1 338211420 10870448 2196432..2197187 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: phe:Phep_2598 major facilitator superfamily protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; 3-oxoacyl-ACP reductase 2197187 10870448 Runsl_1917 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004655473.1 2196432 D 761193 CDS YP_004655474.1 338211421 10870449 2197191..2198435 1 NC_015703.1 PFAM: Major Facilitator Superfamily; Prodigal; This gene is disrupted by insertion of repetitive element; manually curated; major facilitator superfamily protein 2198435 10870449 Runsl_1918 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004655474.1 2197191 D 761193 CDS YP_004655475.1 338211422 10870451 join(2200500..2200964,2200966..2201511) 1 NC_015703.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; Prodigal; manually curated; transposase 2201511 10870451 Runsl_1920 Runella slithyformis DSM 19594 transposase YP_004655475.1 2200500 D 761193 CDS YP_004655476.1 338211423 10870453 2202910..2203635 1 NC_015703.1 PFAM: Metallo-beta-lactamase superfamily; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341:IPR013342; KEGG: phe:Phep_2597 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal; PRIAM: Galactonate dehydratase; SPTR: Mandelate racemase/muconate lactonizing protein; beta-lactamase domain-containing protein 2203635 10870453 Runsl_1922 Runella slithyformis DSM 19594 beta-lactamase domain-containing protein YP_004655476.1 2202910 D 761193 CDS YP_004655477.1 338211424 10870454 2203632..2204801 1 NC_015703.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: chu:CHU_0673 lipoprotein transmembrane protein; PFAM: Bile acid:sodium symporter; SPTR: Possible lipoprotein transmembrane protein; galactonate dehydratase 2204801 10870454 Runsl_1923 Runella slithyformis DSM 19594 galactonate dehydratase YP_004655477.1 2203632 D 761193 CDS YP_004655478.1 338211425 10870455 complement(2205020..2205997) 1 NC_015703.1 COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873; KEGG: hch:HCH_04499 long-chain acyl-CoA synthetase-like protein; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: AMP-dependent synthetase and ligase; bile acid:sodium symporter 2205997 10870455 Runsl_1924 Runella slithyformis DSM 19594 bile acid:sodium symporter YP_004655478.1 2205020 R 761193 CDS YP_004655479.1 338211426 10870456 2206412..2208091 1 NC_015703.1 PFAM: AMP-binding enzyme; Prodigal; manually curated; long-chain-fatty-acid--CoA ligase 2208091 10870456 Runsl_1925 Runella slithyformis DSM 19594 long-chain-fatty-acid--CoA ligase YP_004655479.1 2206412 D 761193 CDS YP_004655480.1 338211427 10870458 2208657..2210036 1 NC_015703.1 PFAM: Glutamine synthetase, catalytic domain; glutamate--ammonia ligase 2210036 10870458 Runsl_1927 Runella slithyformis DSM 19594 glutamate--ammonia ligase YP_004655480.1 2208657 D 761193 CDS YP_004655481.1 338211428 10870459 complement(2210154..2210261) 1 NC_015703.1 COGs: COG0605 Superoxide dismutase; InterPro IPR019831:IPR019832; KEGG: cpi:Cpin_1061 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; SPTR: Superoxide dismutase; hypothetical protein 2210261 10870459 Runsl_1928 Runella slithyformis DSM 19594 hypothetical protein YP_004655481.1 2210154 R 761193 CDS YP_004655482.1 338211429 10870460 2210282..2210956 1 NC_015703.1 PFAM: Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, C-terminal domain; COGs: COG0597 Lipoprotein signal peptidase; HAMAP: Peptidase A8, signal peptidase II; InterPro IPR001872; KEGG: dfe:Dfer_4392 lipoprotein signal peptidase; PRIAM: Signal peptidase II; SPTR: Lipoprotein signal peptidase 2; TIGRFAM: Peptidase A8, signal peptidase II; manganese/iron superoxide dismutase 2210956 10870460 Runsl_1929 Runella slithyformis DSM 19594 manganese/iron superoxide dismutase YP_004655482.1 2210282 D 761193 CDS YP_004655483.1 338211430 10870461 complement(2211057..2211890) 1 NC_015703.1 PFAM: Signal peptidase (SPase) II; InterPro IPR002872; KEGG: dfe:Dfer_4393 proline dehydrogenase; PFAM: Proline dehydrogenase; SPTR: Proline dehydrogenase; lipoprotein signal peptidase 2211890 10870461 Runsl_1930 Runella slithyformis DSM 19594 lipoprotein signal peptidase YP_004655483.1 2211057 R 761193 CDS YP_004655484.1 338211431 10870462 complement(2211901..2213109) 1 NC_015703.1 PFAM: Proline dehydrogenase; COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006218:IPR020822; KEGG: dfe:Dfer_4394 DAHP synthetase I/KdsA; PFAM: DAHP synthetase I/KDSA; Chorismate mutase, type II; PRIAM: 3-deoxy-7-phosphoheptulonate synthase; SPTR: DAHP synthetase I/KDSA; proline dehydrogenase 2213109 10870462 Runsl_1931 Runella slithyformis DSM 19594 proline dehydrogenase YP_004655484.1 2211901 R 761193 CDS YP_004655485.1 338211432 10870463 2213235..2214332 1 NC_015703.1 PFAM: Chorismate mutase type II; DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001867; KEGG: sli:Slin_2355 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, C-terminal; SPTR: two component transcriptional regulator, winged helix family; 3-deoxy-7-phosphoheptulonate synthase 2214332 10870463 Runsl_1932 Runella slithyformis DSM 19594 3-deoxy-7-phosphoheptulonate synthase YP_004655485.1 2213235 D 761193 CDS YP_004655486.1 338211433 10870464 complement(2214526..2215446) 1 NC_015703.1 PFAM: Transcriptional regulatory protein, C terminal; InterPro IPR007372; KEGG: cat:CA2559_06410 YCE I like family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YCE I like family protein; manually curated; winged helix family transcriptional regulator 2215446 10870464 Runsl_1933 Runella slithyformis DSM 19594 winged helix family transcriptional regulator YP_004655486.1 2214526 R 761193 CDS YP_004655487.1 338211434 10870465 complement(2215516..2216154) 1 NC_015703.1 PFAM: YceI-like domain; Prodigal; hypothetical protein 2216154 10870465 Runsl_1934 Runella slithyformis DSM 19594 hypothetical protein YP_004655487.1 2215516 R 761193 CDS YP_004655488.1 338211435 10870467 complement(2217030..2217497) 1 NC_015703.1 InterPro IPR003838; KEGG: sli:Slin_0943 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein 2217497 10870467 Runsl_1936 Runella slithyformis DSM 19594 hypothetical protein YP_004655488.1 2217030 R 761193 CDS YP_004655489.1 338211436 10870468 complement(2217606..2220017) 1 NC_015703.1 PFAM: Predicted permease; InterPro IPR002350:IPR011497; KEGG: scl:sce6861 hypothetical protein; PFAM: Protease inhibitor, Kazal-type; SMART: Proteinase inhibitor I1, Kazal; SPTR: uncharacterized protein; hypothetical protein 2220017 10870468 Runsl_1937 Runella slithyformis DSM 19594 hypothetical protein YP_004655489.1 2217606 R 761193 CDS YP_004655490.1 338211437 10870469 complement(2220132..2220350) 1 NC_015703.1 PFAM: Kazal-type serine protease inhibitor domain; KEGG: dfe:Dfer_4869 hypothetical protein; SPTR: uncharacterized protein; protease inhibitor Kazal-type 2220350 10870469 Runsl_1938 Runella slithyformis DSM 19594 protease inhibitor Kazal-type YP_004655490.1 2220132 R 761193 CDS YP_004655491.1 338211438 10870470 complement(2220387..2220752) 1 NC_015703.1 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: sli:Slin_3314 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein 2220752 10870470 Runsl_1939 Runella slithyformis DSM 19594 hypothetical protein YP_004655491.1 2220387 R 761193 CDS YP_004655492.1 338211439 10870471 complement(2220950..2223364) 1 NC_015703.1 PFAM: Predicted permease; KEGG: sli:Slin_4640 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2223364 10870471 Runsl_1940 Runella slithyformis DSM 19594 hypothetical protein YP_004655492.1 2220950 R 761193 CDS YP_004655493.1 338211440 10870472 complement(2223648..2223944) 1 NC_015703.1 KEGG: sli:Slin_4640 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2223944 10870472 Runsl_1941 Runella slithyformis DSM 19594 hypothetical protein YP_004655493.1 2223648 R 761193 CDS YP_004655494.1 338211441 10870473 complement(2223949..2224251) 1 NC_015703.1 InterPro IPR003838; KEGG: sli:Slin_4639 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein 2224251 10870473 Runsl_1942 Runella slithyformis DSM 19594 hypothetical protein YP_004655494.1 2223949 R 761193 CDS YP_004655495.1 338211442 10870474 complement(2224452..2227022) 1 NC_015703.1 PFAM: Predicted permease; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011658:IPR006665; KEGG: sli:Slin_4643 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; PA14; SMART: PA14; SPTR: OmpA/MotB domain protein; hypothetical protein 2227022 10870474 Runsl_1943 Runella slithyformis DSM 19594 hypothetical protein YP_004655495.1 2224452 R 761193 CDS YP_004655496.1 338211443 10870475 complement(2226973..2228004) 1 NC_015703.1 PFAM: OmpA family; PA14 domain; manually curated; OmpA/MotB domain-containing protein 2228004 10870475 Runsl_1944 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004655496.1 2226973 R 761193 CDS YP_004655497.1 338211444 10870477 complement(2228493..2230928) 1 NC_015703.1 PFAM: Predicted permease; TIGRFAM: Acidobacterial duplicated orphan permease; InterPro IPR003838; KEGG: sli:Slin_4627 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein 2230928 10870477 Runsl_1946 Runella slithyformis DSM 19594 hypothetical protein YP_004655497.1 2228493 R 761193 CDS YP_004655498.1 338211445 10870478 complement(2231094..2233484) 1 NC_015703.1 PFAM: Predicted permease; InterPro IPR003838; KEGG: sli:Slin_4615 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein 2233484 10870478 Runsl_1947 Runella slithyformis DSM 19594 hypothetical protein YP_004655498.1 2231094 R 761193 CDS YP_004655499.1 338211446 10870479 complement(2233583..2236009) 1 NC_015703.1 PFAM: Predicted permease; TIGRFAM: Acidobacterial duplicated orphan permease; InterPro IPR003838; KEGG: sli:Slin_4630 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein 2236009 10870479 Runsl_1948 Runella slithyformis DSM 19594 hypothetical protein YP_004655499.1 2233583 R 761193 CDS YP_004655500.1 338211447 10870480 complement(2236090..2238516) 1 NC_015703.1 PFAM: Predicted permease; InterPro IPR003838; KEGG: dfe:Dfer_4857 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein 2238516 10870480 Runsl_1949 Runella slithyformis DSM 19594 hypothetical protein YP_004655500.1 2236090 R 761193 CDS YP_004655501.1 338211448 10870481 complement(2239059..2241506) 1 NC_015703.1 PFAM: Predicted permease; TIGRFAM: Acidobacterial duplicated orphan permease; InterPro IPR003838; KEGG: zpr:ZPR_4640 ABC transporter permease; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: ABC transporter permease; hypothetical protein 2241506 10870481 Runsl_1950 Runella slithyformis DSM 19594 hypothetical protein YP_004655501.1 2239059 R 761193 CDS YP_004655502.1 338211449 10870482 complement(2241646..2244114) 1 NC_015703.1 PFAM: Predicted permease; InterPro IPR003838; KEGG: sli:Slin_4595 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein 2244114 10870482 Runsl_1951 Runella slithyformis DSM 19594 hypothetical protein YP_004655502.1 2241646 R 761193 CDS YP_004655503.1 338211450 10870483 complement(2244293..2246701) 1 NC_015703.1 PFAM: Predicted permease; hypothetical protein 2246701 10870483 Runsl_1952 Runella slithyformis DSM 19594 hypothetical protein YP_004655503.1 2244293 R 761193 CDS YP_004655504.1 338211451 10870484 2247109..2247927 1 NC_015703.1 COGs: COG0339 Zn-dependent oligopeptidase; InterPro IPR001567; KEGG: sli:Slin_0934 peptidyl-dipeptidase DCP; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; PRIAM: Peptidyl-dipeptidase Dcp; SPTR: Peptidyl-dipeptidase Dcp; hypothetical protein 2247927 10870484 Runsl_1953 Runella slithyformis DSM 19594 hypothetical protein YP_004655504.1 2247109 D 761193 CDS YP_004655505.1 338211452 10870485 2248076..2250193 1 NC_015703.1 PFAM: Peptidase M3; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1282 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; peptidyl-dipeptidase Dcp 2250193 10870485 Runsl_1954 Runella slithyformis DSM 19594 peptidyl-dipeptidase Dcp YP_004655505.1 2248076 D 761193 CDS YP_004655506.1 338211453 10870486 2250478..2253045 1 NC_015703.1 KEGG: dfe:Dfer_1283 conserved hypothetical signal peptide protein; SPTR: Conserved hypothetical signal peptide protein; TonB-dependent receptor 2253045 10870486 Runsl_1955 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004655506.1 2250478 D 761193 CDS YP_004655507.1 338211454 10870487 2253241..2253954 1 NC_015703.1 KEGG: dfe:Dfer_4852 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2253954 10870487 Runsl_1956 Runella slithyformis DSM 19594 hypothetical protein YP_004655507.1 2253241 D 761193 CDS YP_004655508.1 338211455 10870488 complement(2254104..2254490) 1 NC_015703.1 KEGG: sli:Slin_6580 hypothetical protein; SPTR: Membrane protein; hypothetical protein 2254490 10870488 Runsl_1957 Runella slithyformis DSM 19594 hypothetical protein YP_004655508.1 2254104 R 761193 CDS YP_004655509.1 338211456 10870489 2254883..2256127 1 NC_015703.1 hypothetical protein 2256127 10870489 Runsl_1958 Runella slithyformis DSM 19594 hypothetical protein YP_004655509.1 2254883 D 761193 CDS YP_004655510.1 338211457 10870490 2256355..2256771 1 NC_015703.1 InterPro IPR013216; KEGG: kfl:Kfla_1937 type 11 methyltransferase; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; hypothetical protein 2256771 10870490 Runsl_1959 Runella slithyformis DSM 19594 hypothetical protein YP_004655510.1 2256355 D 761193 CDS YP_004655511.1 338211458 10870491 complement(2256943..2257557) 1 NC_015703.1 PFAM: Methyltransferase domain; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: sli:Slin_0931 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; type 11 methyltransferase 2257557 10870491 Runsl_1960 Runella slithyformis DSM 19594 type 11 methyltransferase YP_004655511.1 2256943 R 761193 CDS YP_004655512.1 338211459 10870492 complement(2257669..2260287) 1 NC_015703.1 PFAM: Predicted permease; InterPro IPR005149; KEGG: sli:Slin_0945 PadR family transcriptional regulator; PFAM: Transcriptional regulator PadR N-terminal-like; SPTR: Transcriptional regulator, PadR-like family; hypothetical protein 2260287 10870492 Runsl_1961 Runella slithyformis DSM 19594 hypothetical protein YP_004655512.1 2257669 R 761193 CDS YP_004655513.1 338211460 10870493 complement(2260344..2260676) 1 NC_015703.1 PFAM: Transcriptional regulator PadR-like family; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: shg:Sph21_3946 xylose isomerase domain-containing protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; PadR family transcriptional regulator 2260676 10870493 Runsl_1962 Runella slithyformis DSM 19594 PadR family transcriptional regulator YP_004655513.1 2260344 R 761193 CDS YP_004655514.1 338211461 10870494 2260945..2261793 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; manually curated; xylose isomerase domain-containing protein 2261793 10870494 Runsl_1963 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004655514.1 2260945 D 761193 CDS YP_004655515.1 338211462 10870496 complement(2262193..2262975) 1 NC_015703.1 InterPro IPR003838; KEGG: sli:Slin_0948 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein 2262975 10870496 Runsl_1965 Runella slithyformis DSM 19594 hypothetical protein YP_004655515.1 2262193 R 761193 CDS YP_004655516.1 338211463 10870497 complement(2263118..2265523) 1 NC_015703.1 PFAM: Predicted permease; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: dfe:Dfer_2089 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein 2265523 10870497 Runsl_1966 Runella slithyformis DSM 19594 hypothetical protein YP_004655516.1 2263118 R 761193 CDS YP_004655517.1 338211464 10870498 complement(2265656..2268040) 1 NC_015703.1 PFAM: Predicted permease; InterPro IPR003838; KEGG: sli:Slin_0927 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein 2268040 10870498 Runsl_1967 Runella slithyformis DSM 19594 hypothetical protein YP_004655517.1 2265656 R 761193 CDS YP_004655518.1 338211465 10870499 complement(2268139..2270541) 1 NC_015703.1 PFAM: Predicted permease; COGs: COG3727 DNA G:T-mismatch repair endonuclease; InterPro IPR004603; KEGG: cpi:Cpin_2561 DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; SPTR: DNA mismatch endonuclease Vsr; TIGRFAM: DNA mismatch endonuclease vsr; hypothetical protein 2270541 10870499 Runsl_1968 Runella slithyformis DSM 19594 hypothetical protein YP_004655518.1 2268139 R 761193 CDS YP_004655519.1 338211466 10870500 2270958..2271392 1 NC_015703.1 PFAM: DNA mismatch endonuclease Vsr; TIGRFAM: DNA mismatch endonuclease Vsr; InterPro IPR003838; KEGG: dfe:Dfer_4843 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; DNA mismatch endonuclease Vsr 2271392 10870500 Runsl_1969 Runella slithyformis DSM 19594 DNA mismatch endonuclease Vsr YP_004655519.1 2270958 D 761193 CDS YP_004655520.1 338211467 10870501 complement(2271407..2273764) 1 NC_015703.1 PFAM: Predicted permease; hypothetical protein 2273764 10870501 Runsl_1970 Runella slithyformis DSM 19594 hypothetical protein YP_004655520.1 2271407 R 761193 CDS YP_004655521.1 338211468 10870502 2273771..2273932 1 NC_015703.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: sli:Slin_4589 ABC transporter; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; hypothetical protein 2273932 10870502 Runsl_1971 Runella slithyformis DSM 19594 hypothetical protein YP_004655521.1 2273771 D 761193 CDS YP_004655522.1 338211469 10870503 complement(2273852..2274529) 1 NC_015703.1 PFAM: ABC transporter; InterPro IPR008815; KEGG: paa:Paes_1770 hypothetical protein; PFAM: 23S rRNA-associated protein; SPTR: S23 ribosomal protein; phosphonate-transporting ATPase 2274529 10870503 Runsl_1972 Runella slithyformis DSM 19594 phosphonate-transporting ATPase YP_004655522.1 2273852 R 761193 CDS YP_004655523.1 338211470 10870504 2274659..2274979 1 NC_015703.1 PFAM: S23 ribosomal protein; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_4837 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; S23 ribosomal protein 2274979 10870504 Runsl_1973 Runella slithyformis DSM 19594 S23 ribosomal protein YP_004655523.1 2274659 D 761193 CDS YP_004655524.1 338211471 10870505 complement(2275042..2276349) 1 NC_015703.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; RND family efflux transporter MFP subunit 2276349 10870505 Runsl_1974 Runella slithyformis DSM 19594 RND family efflux transporter MFP subunit YP_004655524.1 2275042 R 761193 CDS YP_004655525.1 338211472 10870506 2276607..2276735 1 NC_015703.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR003593:IPR002078:IPR002197; KEGG: dfe:Dfer_4836 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family; hypothetical protein 2276735 10870506 Runsl_1975 Runella slithyformis DSM 19594 hypothetical protein YP_004655525.1 2276607 D 761193 CDS YP_004655526.1 338211473 10870507 2276714..2278084 1 NC_015703.1 PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterPro IPR003594; KEGG: dfe:Dfer_4824 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: PAS/PAC sensor signal transduction histidine kinase; Fis family transcriptional regulator 2278084 10870507 Runsl_1976 Runella slithyformis DSM 19594 Fis family transcriptional regulator YP_004655526.1 2276714 D 761193 CDS YP_004655527.1 338211474 10870508 2278081..2279409 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG3502 conserved hypothetical protein; InterPro IPR009297; KEGG: sli:Slin_5199 hypothetical protein; PFAM: Protein of unknown function DUF952; SPTR: uncharacterized protein; integral membrane sensor signal transduction histidine kinase 2279409 10870508 Runsl_1977 Runella slithyformis DSM 19594 integral membrane sensor signal transduction histidine kinase YP_004655527.1 2278081 D 761193 CDS YP_004655528.1 338211475 10870509 complement(2279427..2279741) 1 NC_015703.1 PFAM: Protein of unknown function (DUF952); COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance; InterPro IPR005496; KEGG: sli:Slin_5754 integral membrane protein TerC; PFAM: Integral membrane protein TerC; SPTR: Integral membrane protein TerC; TIGRFAM: integral membrane protein, TerC family; hypothetical protein 2279741 10870509 Runsl_1978 Runella slithyformis DSM 19594 hypothetical protein YP_004655528.1 2279427 R 761193 CDS YP_004655529.1 338211476 10870510 complement(2279738..2280814) 1 NC_015703.1 PFAM: Integral membrane protein TerC family; TIGRFAM: integral membrane protein, TerC family; KEGG: ppn:Palpr_0914 hypothetical protein; SPTR: uncharacterized protein; TerC family integral membrane protein 2280814 10870510 Runsl_1979 Runella slithyformis DSM 19594 TerC family integral membrane protein YP_004655529.1 2279738 R 761193 CDS YP_004655530.1 338211477 10870511 complement(2280911..2281438) 1 NC_015703.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dfe:Dfer_3250 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; hypothetical protein 2281438 10870511 Runsl_1980 Runella slithyformis DSM 19594 hypothetical protein YP_004655530.1 2280911 R 761193 CDS YP_004655531.1 338211478 10870512 complement(2281479..2282195) 1 NC_015703.1 PFAM: Ndr family; COGs: COG1219 ATP-dependent protease Clp ATPase subunit; HAMAP: Clp protease, ATP-binding subunit ClpX; InterProIPR004487:IPR003593:IPR010603:IPR013093:IPR 019489; KEGG: dfe:Dfer_4573 sigma 54 interacting domain protein; PFAM: ATPase associated with various cellular activities, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: Sigma 54 interacting domain protein; TIGRFAM: Clp protease, ATP-binding subunit ClpX; alpha/beta hydrolase 2282195 10870512 Runsl_1981 Runella slithyformis DSM 19594 alpha/beta hydrolase YP_004655531.1 2281479 R 761193 CDS YP_004655532.1 338211479 10870513 complement(2282284..2283522) 1 NC_015703.1 PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX); KEGG: dps:DP2713 hypothetical protein; SPTR: uncharacterized protein; sigma 54 interacting domain-containing protein 2283522 10870513 Runsl_1982 Runella slithyformis DSM 19594 sigma 54 interacting domain-containing protein YP_004655532.1 2282284 R 761193 CDS YP_004655533.1 338211480 10870514 2283835..2284530 1 NC_015703.1 COGs: COG1566 Multidrug resistance efflux pump; KEGG: sli:Slin_0782 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2284530 10870514 Runsl_1983 Runella slithyformis DSM 19594 hypothetical protein YP_004655533.1 2283835 D 761193 CDS YP_004655534.1 338211481 10870515 complement(2284543..2285829) 1 NC_015703.1 COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR003593:IPR005074:IPR001140:IPR003439; KEGG: phe:Phep_0558 ABC transporter-like protein; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; hypothetical protein 2285829 10870515 Runsl_1984 Runella slithyformis DSM 19594 hypothetical protein YP_004655534.1 2284543 R 761193 CDS YP_004655535.1 338211482 10870516 complement(2285832..2288132) 1 NC_015703.1 PFAM: ABC transporter transmembrane region; ABC transporter; Peptidase C39 family; KEGG: pmo:Pmob_0677 hypothetical protein; SPTR: uncharacterized protein; xenobiotic-transporting ATPase 2288132 10870516 Runsl_1985 Runella slithyformis DSM 19594 xenobiotic-transporting ATPase YP_004655535.1 2285832 R 761193 CDS YP_004655536.1 338211483 10870517 complement(2288129..2288740) 1 NC_015703.1 TIGRFAM: radical SAM additional 4Fe4S-binding domain; SPTR: uncharacterized protein; hypothetical protein 2288740 10870517 Runsl_1986 Runella slithyformis DSM 19594 hypothetical protein YP_004655536.1 2288129 R 761193 CDS YP_004655537.1 338211484 10870518 complement(2289076..2289462) 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 2289462 10870518 Runsl_1987 Runella slithyformis DSM 19594 hypothetical protein YP_004655537.1 2289076 R 761193 CDS YP_004655538.1 338211485 10870520 complement(2290591..2290860) 1 NC_015703.1 hypothetical protein 2290860 10870520 Runsl_1989 Runella slithyformis DSM 19594 hypothetical protein YP_004655538.1 2290591 R 761193 CDS YP_004655539.1 338211486 10870521 complement(2290998..2291471) 1 NC_015703.1 hypothetical protein 2291471 10870521 Runsl_1990 Runella slithyformis DSM 19594 hypothetical protein YP_004655539.1 2290998 R 761193 CDS YP_004655540.1 338211487 10870522 complement(2291555..2291755) 1 NC_015703.1 hypothetical protein 2291755 10870522 Runsl_1991 Runella slithyformis DSM 19594 hypothetical protein YP_004655540.1 2291555 R 761193 CDS YP_004655541.1 338211488 10870523 2291787..2291879 1 NC_015703.1 InterPro IPR001387; KEGG: sli:Slin_1627 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; hypothetical protein 2291879 10870523 Runsl_1992 Runella slithyformis DSM 19594 hypothetical protein YP_004655541.1 2291787 D 761193 CDS YP_004655542.1 338211489 10870524 2292137..2292604 1 NC_015703.1 PFAM: Helix-turn-helix; COGs: COG0605 Superoxide dismutase; InterPro IPR019831:IPR019832; KEGG: dfe:Dfer_4203 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; PRIAM: Superoxide dismutase; SPTR: Superoxide dismutase; helix-turn-helix domain-containing protein 2292604 10870524 Runsl_1993 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004655542.1 2292137 D 761193 CDS YP_004655543.1 338211490 10870525 complement(2292801..2293403) 1 NC_015703.1 PFAM: Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, C-terminal domain; COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125; KEGG: sli:Slin_5394 CMP/dCMP deaminase zinc-binding protein; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: CMP/dCMP deaminase zinc-binding protein; Superoxide dismutase 2293403 10870525 Runsl_1994 Runella slithyformis DSM 19594 Superoxide dismutase YP_004655543.1 2292801 R 761193 CDS YP_004655544.1 338211491 10870526 complement(2293460..2293924) 1 NC_015703.1 PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro IPR006163; KEGG: sli:Slin_4413 phosphopantetheine-binding protein; PFAM: Phosphopantetheine-binding; SPTR: Phosphopantetheine-binding protein; CMP/dCMP deaminase zinc-binding protein 2293924 10870526 Runsl_1995 Runella slithyformis DSM 19594 CMP/dCMP deaminase zinc-binding protein YP_004655544.1 2293460 R 761193 CDS YP_004655545.1 338211492 10870527 complement(2294223..2294462) 1 NC_015703.1 PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein; phosphopantetheine-binding protein 2294462 10870527 Runsl_1996 Runella slithyformis DSM 19594 phosphopantetheine-binding protein YP_004655545.1 2294223 R 761193 CDS YP_004655546.1 338211493 10870528 2294467..2294595 1 NC_015703.1 COGs: COG0296 1 4-alpha-glucan branching enzyme; HAMAP: 1,4-alpha-glucan branching enzyme, core region; InterProIPR006407:IPR006589:IPR004193:IPR006047:IPR 006048; KEGG: dfe:Dfer_1955 1,4-alpha-glucan branching enzyme; PFAM: Alpha-amylase, C-terminal all beta; Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic region; PRIAM: 1,4-alpha-glucan branching enzyme; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; SPTR: 1,4-alpha-glucan-branching enzyme 2; TIGRFAM: 1,4-alpha-glucan branching enzyme, core region; hypothetical protein 2294595 10870528 Runsl_1997 Runella slithyformis DSM 19594 hypothetical protein YP_004655546.1 2294467 D 761193 CDS YP_004655547.1 338211494 10870529 complement(2294650..2296677) 1 NC_015703.1 PFAM: Alpha amylase, C-terminal all-beta domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain; TIGRFAM: alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase; COGs: COG3201 Nicotinamide mononucleotide transporter; InterPro IPR006419; KEGG: sli:Slin_5815 nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; SPTR: Nicotinamide mononucleotide transporter PnuC; TIGRFAM: Nicotinamide mononucleotide transporter PnuC; 1,4-alpha-glucan-branching protein 2296677 10870529 Runsl_1998 Runella slithyformis DSM 19594 1,4-alpha-glucan-branching protein YP_004655547.1 2294650 R 761193 CDS YP_004655548.1 338211495 10870530 2296802..2297476 1 NC_015703.1 PFAM: Nicotinamide mononucleotide transporter; TIGRFAM: nicotinamide mononucleotide transporter PnuC; manually curated; nicotinamide mononucleotide transporter PnuC 2297476 10870530 Runsl_1999 Runella slithyformis DSM 19594 nicotinamide mononucleotide transporter PnuC YP_004655548.1 2296802 D 761193 CDS YP_004655549.1 338211496 10870532 complement(2297695..2298846) 1 NC_015703.1 PFAM: Peptidase M28; peptidase M28 2298846 10870532 Runsl_2001 Runella slithyformis DSM 19594 peptidase M28 YP_004655549.1 2297695 R 761193 CDS YP_004655550.1 338211497 10870533 complement(2298861..2299607) 1 NC_015703.1 KEGG: dfe:Dfer_3253 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2299607 10870533 Runsl_2002 Runella slithyformis DSM 19594 hypothetical protein YP_004655550.1 2298861 R 761193 CDS YP_004655551.1 338211498 10870534 complement(2299751..2300164) 1 NC_015703.1 COGs: COG0611 Thiamine monophosphate kinase; InterPro IPR000728:IPR006283; KEGG: dfe:Dfer_3561 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; PRIAM: Thiamine-phosphate kinase; SPTR: Thiamine-monophosphate kinase; TIGRFAM: Thiamine-monophosphate kinase; hypothetical protein 2300164 10870534 Runsl_2003 Runella slithyformis DSM 19594 hypothetical protein YP_004655551.1 2299751 R 761193 CDS YP_004655552.1 338211499 10870535 complement(2300211..2301251) 1 NC_015703.1 PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: thiamine-monophosphate kinase; COGs: COG0225 Peptide methionine sulfoxide reductase; HAMAP: Peptide methionine sulphoxide reductase MsrA; InterPro IPR002569; KEGG: dfe:Dfer_3755 peptide methionine sulfoxide reductase; PFAM: Peptide methionine sulphoxide reductase MsrA; PRIAM: Peptide-methionine (S)-S-oxide reductase; SPTR: Peptide methionine sulfoxide reductase MsrA; TIGRFAM: Peptide methionine sulphoxide reductase MsrA; thiamine-monophosphate kinase 2301251 10870535 Runsl_2004 Runella slithyformis DSM 19594 thiamine-monophosphate kinase YP_004655552.1 2300211 R 761193 CDS YP_004655553.1 338211500 10870536 2301445..2302098 1 NC_015703.1 PFAM: Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase; peptide methionine sulfoxide reductase 2302098 10870536 Runsl_2005 Runella slithyformis DSM 19594 peptide methionine sulfoxide reductase YP_004655553.1 2301445 D 761193 CDS YP_004655554.1 338211501 10870537 2302307..2302576 1 NC_015703.1 KEGG: sro:Sros_3830 spheroidene monooxygenase; SPTR: Spheroidene monooxygenase; hypothetical protein 2302576 10870537 Runsl_2006 Runella slithyformis DSM 19594 hypothetical protein YP_004655554.1 2302307 D 761193 CDS YP_004655555.1 338211502 10870538 complement(2302594..2303334) 1 NC_015703.1 PFAM: Domain of unknown function (DUF3291); COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_4898 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; hypothetical protein 2303334 10870538 Runsl_2007 Runella slithyformis DSM 19594 hypothetical protein YP_004655555.1 2302594 R 761193 CDS YP_004655556.1 338211503 10870539 2303569..2304234 1 NC_015703.1 PFAM: ABC transporter; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_4897 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; phosphonate-transporting ATPase 2304234 10870539 Runsl_2008 Runella slithyformis DSM 19594 phosphonate-transporting ATPase YP_004655556.1 2303569 D 761193 CDS YP_004655557.1 338211504 10870540 2304264..2305589 1 NC_015703.1 PFAM: Outer membrane efflux protein; COGs: COG0682 Prolipoprotein diacylglyceryltransferase; HAMAP: Prolipoprotein diacylglyceryl transferase; InterPro IPR001640; KEGG: sli:Slin_1084 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; SPTR: Prolipoprotein diacylglyceryl transferase; TIGRFAM: Prolipoprotein diacylglyceryl transferase; outer membrane efflux protein 2305589 10870540 Runsl_2009 Runella slithyformis DSM 19594 outer membrane efflux protein YP_004655557.1 2304264 D 761193 CDS YP_004655558.1 338211505 10870541 2305761..2306624 1 NC_015703.1 PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; KEGG: dfe:Dfer_4315 hypothetical protein; SPTR: uncharacterized protein; prolipoprotein diacylglyceryl transferase 2306624 10870541 Runsl_2010 Runella slithyformis DSM 19594 prolipoprotein diacylglyceryl transferase YP_004655558.1 2305761 D 761193 CDS YP_004655559.1 338211506 10870542 2306739..2307341 1 NC_015703.1 COGs: COG3844 Kynureninase; InterPro IPR000192:IPR010111; KEGG: sli:Slin_1518 kynureninase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Kynureninase; SPTR: Kynureninase; TIGRFAM: Kynureninase; hypothetical protein 2307341 10870542 Runsl_2011 Runella slithyformis DSM 19594 hypothetical protein YP_004655559.1 2306739 D 761193 CDS YP_004655560.1 338211507 10870543 complement(2307511..2308809) 1 NC_015703.1 PFAM: Aminotransferase class-V; TIGRFAM: kynureninase; InterPro IPR013766; KEGG: dfe:Dfer_3953 thioredoxin domain; PFAM: Thioredoxin domain; SPTR: Thioredoxin domain; kynureninase 2308809 10870543 Runsl_2012 Runella slithyformis DSM 19594 kynureninase YP_004655560.1 2307511 R 761193 CDS YP_004655561.1 338211508 10870544 complement(2308894..2309340) 1 NC_015703.1 PFAM: Thioredoxin; KEGG: dfe:Dfer_1099 hypothetical protein; SPTR: uncharacterized protein; thioredoxin 2309340 10870544 Runsl_2013 Runella slithyformis DSM 19594 thioredoxin YP_004655561.1 2308894 R 761193 CDS YP_004655562.1 338211509 10870545 complement(2309423..2311159) 1 NC_015703.1 PFAM: PA14 domain; Domain of Unknown Function (DUF1080); KEGG: sli:Slin_4115 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2311159 10870545 Runsl_2014 Runella slithyformis DSM 19594 hypothetical protein YP_004655562.1 2309423 R 761193 CDS YP_004655563.1 338211510 10870546 complement(2311218..2315645) 1 NC_015703.1 COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764:IPR001466; KEGG: sli:Slin_5392 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 3, N-terminal; Beta-lactamase-related; PRIAM: Beta-N-acetylhexosaminidase., Beta-lactamase; SPTR: Beta-N-acetylhexosaminidase; hypothetical protein 2315645 10870546 Runsl_2015 Runella slithyformis DSM 19594 hypothetical protein YP_004655563.1 2311218 R 761193 CDS YP_004655564.1 338211511 10870547 complement(2315728..2318694) 1 NC_015703.1 PFAM: Glycosyl hydrolase 3 N terminal domain; Beta-lactamase; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_4228 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; beta-N-acetylhexosaminidase., beta-lactamase 2318694 10870547 Runsl_2016 Runella slithyformis DSM 19594 beta-N-acetylhexosaminidase., beta-lactamase YP_004655564.1 2315728 R 761193 CDS YP_004655565.1 338211512 10870548 2318986..2321781 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent receptor; KEGG: sli:Slin_5438 cell surface receptor IPT/TIG domain protein; SPTR: uncharacterized protein; TonB-dependent receptor 2321781 10870548 Runsl_2017 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004655565.1 2318986 D 761193 CDS YP_004655566.1 338211513 10870549 2321883..2323634 1 NC_015703.1 cell surface receptor IPT/TIG domain-containing protein 2323634 10870549 Runsl_2018 Runella slithyformis DSM 19594 cell surface receptor IPT/TIG domain-containing protein YP_004655566.1 2321883 D 761193 CDS YP_004655567.1 338211514 10870550 2323677..2324255 1 NC_015703.1 KEGG: dfe:Dfer_3320 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2324255 10870550 Runsl_2019 Runella slithyformis DSM 19594 hypothetical protein YP_004655567.1 2323677 D 761193 CDS YP_004655568.1 338211515 10870551 2324383..2325462 1 NC_015703.1 PFAM: Protein of unknown function (DUF3500); InterPro IPR006626; KEGG: sli:Slin_3272 hypothetical protein; SPTR: Parallel beta-helix repeat protein; TIGRFAM: parallel beta-helix repeat-containing protein; hypothetical protein 2325462 10870551 Runsl_2020 Runella slithyformis DSM 19594 hypothetical protein YP_004655568.1 2324383 D 761193 CDS YP_004655569.1 338211516 10870552 complement(2325464..2326669) 1 NC_015703.1 TIGRFAM: parallel beta-helix repeat-containing protein; COGs: COG0054 Riboflavin synthase beta-chain; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; InterPro IPR002180; KEGG: dfe:Dfer_3816 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; SPTR: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; parallel beta-helix repeat-containing protein 2326669 10870552 Runsl_2021 Runella slithyformis DSM 19594 parallel beta-helix repeat-containing protein YP_004655569.1 2325464 R 761193 CDS YP_004655570.1 338211517 10870553 2326791..2327270 1 NC_015703.1 PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; COGs: COG0118 Glutamine amidotransferase; InterPro IPR000991:IPR010139; KEGG: sli:Slin_5533 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: Glutamine amidotransferase class-I, C-terminal; SPTR: Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; 6,7-dimethyl-8-ribityllumazine synthase 2327270 10870553 Runsl_2022 Runella slithyformis DSM 19594 6,7-dimethyl-8-ribityllumazine synthase YP_004655570.1 2326791 D 761193 CDS YP_004655571.1 338211518 10870554 2327267..2327854 1 NC_015703.1 PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; KEGG: shg:Sph21_3595 protein of unknown function DUF2490; SPTR: uncharacterized protein; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 2327854 10870554 Runsl_2023 Runella slithyformis DSM 19594 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_004655571.1 2327267 D 761193 CDS YP_004655572.1 338211519 10870555 2327885..2328619 1 NC_015703.1 PFAM: Protein of unknown function (DUF2490); COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: rbi:RB2501_07250 rhodanese-like domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Thiosulfate sulfurtransferase GlpE; hypothetical protein 2328619 10870555 Runsl_2024 Runella slithyformis DSM 19594 hypothetical protein YP_004655572.1 2327885 D 761193 CDS YP_004655573.1 338211520 10870556 2328619..2329116 1 NC_015703.1 PFAM: Rhodanese-like domain; InterPro IPR008854; KEGG: wvi:Weevi_1737 thiopurine S-methyltransferase; PFAM: Thiopurine S-methyltransferase; SPTR: Thiopurine S-methyltransferase; rhodanese-like protein 2329116 10870556 Runsl_2025 Runella slithyformis DSM 19594 rhodanese-like protein YP_004655573.1 2328619 D 761193 CDS YP_004655574.1 338211521 10870557 2329253..2329840 1 NC_015703.1 PFAM: Thiopurine S-methyltransferase (TPMT); thiopurine S-methyltransferase 2329840 10870557 Runsl_2026 Runella slithyformis DSM 19594 thiopurine S-methyltransferase YP_004655574.1 2329253 D 761193 CDS YP_004655575.1 338211522 10870558 complement(2329974..2330234) 1 NC_015703.1 COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR006680:IPR013108; KEGG: dfe:Dfer_3692 dihydroorotase; PFAM: Amidohydrolase 1; Amidohydrolase 3; PRIAM: Allantoinase; SPTR: Allantoinase; hypothetical protein 2330234 10870558 Runsl_2027 Runella slithyformis DSM 19594 hypothetical protein YP_004655575.1 2329974 R 761193 CDS YP_004655576.1 338211523 10870559 complement(2330589..2331956) 1 NC_015703.1 PFAM: Amidohydrolase; TIGRFAM: dihydroorotase, multifunctional complex type; allantoinase 2331956 10870559 Runsl_2028 Runella slithyformis DSM 19594 allantoinase YP_004655576.1 2330589 R 761193 CDS YP_004655577.1 338211524 10870560 2332073..2332306 1 NC_015703.1 COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154:IPR013149; KEGG: sli:Slin_5937 alcohol dehydrogenase zinc-binding domain protein; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; PRIAM: Trans-2-enoyl-CoA reductase (NADPH); SPTR: Alcohol dehydrogenase zinc-binding domain protein; hypothetical protein 2332306 10870560 Runsl_2029 Runella slithyformis DSM 19594 hypothetical protein YP_004655577.1 2332073 D 761193 CDS YP_004655578.1 338211525 10870561 complement(2332643..2333614) 1 NC_015703.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: sli:Slin_5448 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; trans-2-enoyl-CoA reductase (NADPH) 2333614 10870561 Runsl_2030 Runella slithyformis DSM 19594 trans-2-enoyl-CoA reductase (NADPH) YP_004655578.1 2332643 R 761193 CDS YP_004655579.1 338211526 10870562 2333712..2334461 1 NC_015703.1 PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; KEGG: sli:Slin_6031 hypothetical protein; SPTR: uncharacterized protein; phospholipid/glycerol acyltransferase 2334461 10870562 Runsl_2031 Runella slithyformis DSM 19594 phospholipid/glycerol acyltransferase YP_004655579.1 2333712 D 761193 CDS YP_004655580.1 338211527 10870563 complement(2334494..2334733) 1 NC_015703.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_6032 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein 2334733 10870563 Runsl_2032 Runella slithyformis DSM 19594 hypothetical protein YP_004655580.1 2334494 R 761193 CDS YP_004655581.1 338211528 10870564 complement(2334708..2335307) 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; HAMAP:1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; InterPro IPR006062:IPR006063; KEGG: dfe:Dfer_4238 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: Histidine biosynthesis; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR:1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; ECF subfamily RNA polymerase sigma-24 subunit 2335307 10870564 Runsl_2033 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004655581.1 2334708 R 761193 CDS YP_004655582.1 338211529 10870565 complement(2335608..2336333) 1 NC_015703.1 PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro IPR019734:IPR001440; KEGG: mac:MA3293 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: uncharacterized protein; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase 2336333 10870565 Runsl_2034 Runella slithyformis DSM 19594 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase YP_004655582.1 2335608 R 761193 CDS YP_004655583.1 338211530 10870566 complement(2336367..2339495) 1 NC_015703.1 PFAM: Tetratricopeptide repeat; hypothetical protein 2339495 10870566 Runsl_2035 Runella slithyformis DSM 19594 hypothetical protein YP_004655583.1 2336367 R 761193 CDS YP_004655584.1 338211531 10870567 2339692..2340129 1 NC_015703.1 hypothetical protein 2340129 10870567 Runsl_2036 Runella slithyformis DSM 19594 hypothetical protein YP_004655584.1 2339692 D 761193 CDS YP_004655585.1 338211532 10870568 2340190..2341290 1 NC_015703.1 InterPro IPR016047; PFAM: Peptidase M23; SPTR: enzyme with aminotransferase class-III domain protein; hypothetical protein 2341290 10870568 Runsl_2037 Runella slithyformis DSM 19594 hypothetical protein YP_004655585.1 2340190 D 761193 CDS YP_004655586.1 338211533 10870569 2341586..2342299 1 NC_015703.1 PFAM: Peptidase M23; peptidase M23 2342299 10870569 Runsl_2038 Runella slithyformis DSM 19594 peptidase M23 YP_004655586.1 2341586 D 761193 CDS YP_004655587.1 338211534 10870570 2342358..2343008 1 NC_015703.1 COGs: COG2173 D-alanyl-D-alanine dipeptidase; InterPro IPR000755; KEGG: dsh:Dshi_3149 D-alanyl-D-alanine dipeptidase; PFAM: Peptidase M15D, vanX D-ala-D-ala dipeptidase; SPTR: D-alanyl-d-alanine dipeptidase; hypothetical protein 2343008 10870570 Runsl_2039 Runella slithyformis DSM 19594 hypothetical protein YP_004655587.1 2342358 D 761193 CDS YP_004655588.1 338211535 10870571 2343027..2343875 1 NC_015703.1 PFAM: D-ala-D-ala dipeptidase; COGs: COG1193 Mismatch repair ATPase (MutS family); HAMAP: MutS2 protein; InterPro IPR007696:IPR000432:IPR002625:IPR005747; KEGG: dfe:Dfer_5060 MutS2 family protein; PFAM: Smr protein/MutS2 C-terminal; DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; Smr protein/MutS2 C-terminal; SPTR: MutS2 family protein; TIGRFAM: DNA mismatch repair protein MutS, type 2; peptidase M15D vanX D-ala-D-ala dipeptidase 2343875 10870571 Runsl_2040 Runella slithyformis DSM 19594 peptidase M15D vanX D-ala-D-ala dipeptidase YP_004655588.1 2343027 D 761193 CDS YP_004655589.1 338211536 10870572 2344051..2346462 1 NC_015703.1 PFAM: MutS domain V; Smr domain; TIGRFAM: MutS2 family protein; COGs: COG5505 integral membrane protein; InterPro IPR008537; KEGG: sli:Slin_1701 hypothetical protein; PFAM: Protein of unknown function DUF819; SPTR: uncharacterized protein; MutS2 protein 2346462 10870572 Runsl_2041 Runella slithyformis DSM 19594 MutS2 protein YP_004655589.1 2344051 D 761193 CDS YP_004655590.1 338211537 10870573 2346508..2347686 1 NC_015703.1 PFAM: Protein of unknown function (DUF819); COGs: COG0796 Glutamate racemase; HAMAP: Glutamate racemase; InterPro IPR004391:IPR015942; KEGG: sli:Slin_2377 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; PRIAM: Glutamate racemase; SPTR: Glutamate racemase; TIGRFAM: Glutamate racemase; hypothetical protein 2347686 10870573 Runsl_2042 Runella slithyformis DSM 19594 hypothetical protein YP_004655590.1 2346508 D 761193 CDS YP_004655591.1 338211538 10870574 2347706..2348530 1 NC_015703.1 PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: glutamate racemase; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: sli:Slin_5020 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; glutamate racemase 2348530 10870574 Runsl_2043 Runella slithyformis DSM 19594 glutamate racemase YP_004655591.1 2347706 D 761193 CDS YP_004655592.1 338211539 10870575 complement(2348536..2349837) 1 NC_015703.1 PFAM: Predicted permease; COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: mtt:Ftrac_3238 UspA domain-containing protein; PFAM: UspA; SPTR: Universal stress protein family; hypothetical protein 2349837 10870575 Runsl_2044 Runella slithyformis DSM 19594 hypothetical protein YP_004655592.1 2348536 R 761193 CDS YP_004655593.1 338211540 10870576 2349974..2350816 1 NC_015703.1 PFAM: Universal stress protein family; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: sli:Slin_3020 histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SPTR: Histidine kinase; UspA domain-containing protein 2350816 10870576 Runsl_2045 Runella slithyformis DSM 19594 UspA domain-containing protein YP_004655593.1 2349974 D 761193 CDS YP_004655594.1 338211541 10870577 complement(2350824..2354573) 1 NC_015703.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0316 conserved hypothetical protein; InterPro IPR000361; KEGG: dfe:Dfer_5062 HesB/YadR/YfhF-family protein; PFAM: FeS cluster biogenesis; SPTR: HesB/YadR/YfhF-family protein; integral membrane sensor signal transduction histidine kinase 2354573 10870577 Runsl_2046 Runella slithyformis DSM 19594 integral membrane sensor signal transduction histidine kinase YP_004655594.1 2350824 R 761193 CDS YP_004655595.1 338211542 10870578 complement(2354693..2354983) 1 NC_015703.1 PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein; KEGG: sli:Slin_3022 hypothetical protein; SPTR: uncharacterized protein; HesB/YadR/YfhF family protein 2354983 10870578 Runsl_2047 Runella slithyformis DSM 19594 HesB/YadR/YfhF family protein YP_004655595.1 2354693 R 761193 CDS YP_004655596.1 338211543 10870579 2355081..2355608 1 NC_015703.1 KEGG: sli:Slin_6007 endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; hypothetical protein 2355608 10870579 Runsl_2048 Runella slithyformis DSM 19594 hypothetical protein YP_004655596.1 2355081 D 761193 CDS YP_004655597.1 338211544 10870580 complement(2355627..2356817) 1 NC_015703.1 COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR006805:IPR015890; KEGG: dfe:Dfer_3790 anthranilate synthase; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal; PRIAM: Anthranilate synthase; SPTR: Anthranilate synthase; hypothetical protein 2356817 10870580 Runsl_2049 Runella slithyformis DSM 19594 hypothetical protein YP_004655597.1 2355627 R 761193 CDS YP_004655598.1 338211545 10870581 complement(2356947..2358392) 1 NC_015703.1 PFAM: chorismate binding enzyme; Anthranilate synthase component I, N terminal region; KEGG: sli:Slin_3627 hypothetical protein; SPTR: uncharacterized protein; anthranilate synthase 2358392 10870581 Runsl_2050 Runella slithyformis DSM 19594 anthranilate synthase YP_004655598.1 2356947 R 761193 CDS YP_004655599.1 338211546 10870582 complement(2358641..2359255) 1 NC_015703.1 COGs: COG1678 transcriptional regulator protein; HAMAP: Protein of unknown function DUF179; InterPro IPR003774; KEGG: dfe:Dfer_4074 protein of unknown function DUF179; PFAM: Protein of unknown function DUF179; SPTR: UPF0301 protein M23134_01239; hypothetical protein 2359255 10870582 Runsl_2051 Runella slithyformis DSM 19594 hypothetical protein YP_004655599.1 2358641 R 761193 CDS YP_004655600.1 338211547 10870583 complement(2359359..2359913) 1 NC_015703.1 PFAM: Uncharacterized ACR, COG1678; COGs: COG2102 ATPase of PP-loop superfamily; InterPro IPR002761; KEGG: fjo:Fjoh_2929 ATP binding protein; PFAM: Protein of unknown function DUF71, ATP-binding region; SPTR: ANH superfamily adenosine nucleotide alpha hydrolase; TIGRFAM: Protein of unknown function DUF71, ATP-binding region; hypothetical protein 2359913 10870583 Runsl_2052 Runella slithyformis DSM 19594 hypothetical protein YP_004655600.1 2359359 R 761193 CDS YP_004655601.1 338211548 10870584 complement(2360102..2360788) 1 NC_015703.1 PFAM: ATP-binding region; TIGRFAM: MJ0570-related uncharacterized domain; KEGG: shg:Sph21_3372 hypothetical protein; SPTR: uncharacterized protein; ATP-binding protein 2360788 10870584 Runsl_2053 Runella slithyformis DSM 19594 ATP-binding protein YP_004655601.1 2360102 R 761193 CDS YP_004655602.1 338211549 10870585 complement(2360803..2361393) 1 NC_015703.1 KEGG: dfe:Dfer_3393 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2361393 10870585 Runsl_2054 Runella slithyformis DSM 19594 hypothetical protein YP_004655602.1 2360803 R 761193 CDS YP_004655603.1 338211550 10870586 complement(2361802..2362476) 1 NC_015703.1 hypothetical protein 2362476 10870586 Runsl_2055 Runella slithyformis DSM 19594 hypothetical protein YP_004655603.1 2361802 R 761193 CDS YP_004655604.1 338211551 10870587 complement(2362483..2362788) 1 NC_015703.1 hypothetical protein 2362788 10870587 Runsl_2056 Runella slithyformis DSM 19594 hypothetical protein YP_004655604.1 2362483 R 761193 CDS YP_004655605.1 338211552 10870588 complement(2363544..2364140) 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 2364140 10870588 Runsl_2057 Runella slithyformis DSM 19594 hypothetical protein YP_004655605.1 2363544 R 761193 CDS YP_004655606.1 338211553 10870590 2365011..2365910 1 NC_015703.1 PFAM: EamA-like transporter family; KEGG: sli:Slin_6041 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2365910 10870590 Runsl_2059 Runella slithyformis DSM 19594 hypothetical protein YP_004655606.1 2365011 D 761193 CDS YP_004655607.1 338211554 10870591 complement(2366010..2367743) 1 NC_015703.1 InterPro IPR001451; KEGG: sli:Slin_6090 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2367743 10870591 Runsl_2060 Runella slithyformis DSM 19594 hypothetical protein YP_004655607.1 2366010 R 761193 CDS YP_004655608.1 338211555 10870592 complement(2367807..2368991) 1 NC_015703.1 TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; COGs: COG0246 Mannitol-1-phosphate/altronate dehydrogenase; InterPro IPR013131:IPR013118; KEGG: sli:Slin_1056 mannitol dehydrogenase domain protein; PFAM: Mannitol dehydrogenase, C-terminal; Mannitol dehydrogenase, N-terminal; PRIAM: Tagaturonate reductase; SPTR: Mannitol dehydrogenase domain protein; hypothetical protein 2368991 10870592 Runsl_2061 Runella slithyformis DSM 19594 hypothetical protein YP_004655608.1 2367807 R 761193 CDS YP_004655609.1 338211556 10870593 2369183..2370673 1 NC_015703.1 PFAM: Mannitol dehydrogenase C-terminal domain; Mannitol dehydrogenase Rossmann domain; COGs: COG3358 conserved hypothetical protein; InterPro IPR012467; KEGG: sli:Slin_0288 hypothetical protein; PFAM: Protein of unknown function DUF1684; SPTR: uncharacterized protein; Tagaturonate reductase 2370673 10870593 Runsl_2062 Runella slithyformis DSM 19594 Tagaturonate reductase YP_004655609.1 2369183 D 761193 CDS YP_004655610.1 338211557 10870594 2370761..2371408 1 NC_015703.1 PFAM: Protein of unknown function (DUF1684); KEGG: cyj:Cyan7822_0461 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2371408 10870594 Runsl_2063 Runella slithyformis DSM 19594 hypothetical protein YP_004655610.1 2370761 D 761193 CDS YP_004655611.1 338211558 10870595 2371572..2372021 1 NC_015703.1 COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; InterProIPR004532:IPR002547:IPR005146:IPR005147:IPR 005121; KEGG: sli:Slin_0287 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/B4 tRNA-binding domain; tRNA-binding region; tRNA synthetase, B5; Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding; SPTR: Phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; hypothetical protein 2372021 10870595 Runsl_2064 Runella slithyformis DSM 19594 hypothetical protein YP_004655611.1 2371572 D 761193 CDS YP_004655612.1 338211559 10870596 2372162..2374582 1 NC_015703.1 PFAM: tRNA synthetase B5 domain; Ferredoxin-fold anticodon binding domain; B3/4 domain; tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; phenylalanyl-tRNA synthetase subunit beta 2374582 10870596 Runsl_2065 Runella slithyformis DSM 19594 phenylalanyl-tRNA synthetase subunit beta YP_004655612.1 2372162 D 761193 CDS YP_004655613.1 338211560 10870597 2374665..2375063 1 NC_015703.1 KEGG: sli:Slin_0285 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2375063 10870597 Runsl_2066 Runella slithyformis DSM 19594 hypothetical protein YP_004655613.1 2374665 D 761193 CDS YP_004655614.1 338211561 10870598 2375074..2375373 1 NC_015703.1 COGs: COG1418 HD superfamily hydrolase; HAMAP: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; InterProIPR004087:IPR003607:IPR018111:IPR006674:IPR 017705:IPR006675; KEGG: dfe:Dfer_0007 phosphodiesterase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; K Homology, type 1, subgroup; SMART: Metal-dependent phosphohydrolase, HD region; K Homology; SPTR: RNA binding metal dependent phosphohydrolase; TIGRFAM: 2,3-cyclic-nucleotide 2-phosphodiesterase; HDIG; hypothetical protein 2375373 10870598 Runsl_2067 Runella slithyformis DSM 19594 hypothetical protein YP_004655614.1 2375074 D 761193 CDS YP_004655615.1 338211562 10870599 2375473..2377038 1 NC_015703.1 PFAM: KH domain; HD domain; Domain of unknown function (DUF3552); TIGRFAM: conserved hypothetical protein YmdA/YtgF; uncharacterized domain HDIG; COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: sli:Slin_5821 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein; 2,3 cyclic-nucleotide 2-phosphodiesterase 2377038 10870599 Runsl_2068 Runella slithyformis DSM 19594 2,3 cyclic-nucleotide 2-phosphodiesterase YP_004655615.1 2375473 D 761193 CDS YP_004655616.1 338211563 10870600 complement(2377276..2377836) 1 NC_015703.1 PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1; COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151:IPR004447; KEGG: sli:Slin_4394 carboxyl-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: Carboxyl-terminal protease; TIGRFAM: Peptidase S41A, C-terminal protease; thioesterase 2377836 10870600 Runsl_2069 Runella slithyformis DSM 19594 thioesterase YP_004655616.1 2377276 R 761193 CDS YP_004655617.1 338211564 10870601 complement(2377914..2379593) 1 NC_015703.1 PFAM: Peptidase S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterProIPR002421:IPR008918:IPR002562:IPR001098:IPR 020046:IPR020047:IPR018320; KEGG: dfe:Dfer_1096 DNA polymerase I; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease; DNA-directed DNA polymerase, family A, palm domain; SPTR: DNA polymerase I; TIGRFAM: DNA polymerase 1; carboxyl-terminal protease 2379593 10870601 Runsl_2070 Runella slithyformis DSM 19594 carboxyl-terminal protease YP_004655617.1 2377914 R 761193 CDS YP_004655618.1 338211565 10870602 2379741..2382596 1 NC_015703.1 PFAM: 5'-3' exonuclease, C-terminal SAM fold; 3'-5' exonuclease; 5'-3' exonuclease, N-terminal resolvase-like domain; DNA polymerase A; TIGRFAM: DNA polymerase I; KEGG: sli:Slin_4819 hypothetical protein; SPTR: uncharacterized protein; DNA polymerase I 2382596 10870602 Runsl_2071 Runella slithyformis DSM 19594 DNA polymerase I YP_004655618.1 2379741 D 761193 CDS YP_004655619.1 338211566 10870603 complement(2382744..2383166) 1 NC_015703.1 KEGG: sli:Slin_5168 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2383166 10870603 Runsl_2072 Runella slithyformis DSM 19594 hypothetical protein YP_004655619.1 2382744 R 761193 CDS YP_004655620.1 338211567 10870604 2383532..2383900 1 NC_015703.1 hypothetical protein 2383900 10870604 Runsl_2073 Runella slithyformis DSM 19594 hypothetical protein YP_004655620.1 2383532 D 761193 CDS YP_004655621.1 338211568 10870605 complement(2383772..2384029) 1 NC_015703.1 COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR003335:IPR005791:IPR005665; KEGG: sli:Slin_5169 protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: Protein-export membrane protein SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein; SecF protein; hypothetical protein 2384029 10870605 Runsl_2074 Runella slithyformis DSM 19594 hypothetical protein YP_004655621.1 2383772 R 761193 CDS YP_004655622.1 338211569 10870606 2384062..2387151 1 NC_015703.1 PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: ran:Riean_1745 amino acid/polyamine/organocation transporter, apc superfamily; PFAM: Amino acid permease-associated region; SPTR: Amino acid/polyamine/organocation transporter, APC superfamily; protein-export membrane protein SecD 2387151 10870606 Runsl_2075 Runella slithyformis DSM 19594 protein-export membrane protein SecD YP_004655622.1 2384062 D 761193 CDS YP_004655623.1 338211570 10870607 2387355..2388842 1 NC_015703.1 PFAM: Amino acid permease; KEGG: sli:Slin_4983 hypothetical protein; SPTR: uncharacterized protein; amino acid permease 2388842 10870607 Runsl_2076 Runella slithyformis DSM 19594 amino acid permease YP_004655623.1 2387355 D 761193 CDS YP_004655624.1 338211571 10870608 complement(2388900..2389598) 1 NC_015703.1 InterPro IPR011662; KEGG: dfe:Dfer_2831 hypothetical protein; PFAM: Secretin/TonB, short N-terminal; SPTR: uncharacterized protein; hypothetical protein 2389598 10870608 Runsl_2077 Runella slithyformis DSM 19594 hypothetical protein YP_004655624.1 2388900 R 761193 CDS YP_004655625.1 338211572 10870609 complement(2389737..2391695) 1 NC_015703.1 PFAM: Secretin and TonB N terminus short domain; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: dfe:Dfer_2830 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; secretin/TonB short domain-containing protein 2391695 10870609 Runsl_2078 Runella slithyformis DSM 19594 secretin/TonB short domain-containing protein YP_004655625.1 2389737 R 761193 CDS YP_004655626.1 338211573 10870610 complement(2391709..2392761) 1 NC_015703.1 PFAM: FecR protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284:IPR014327; KEGG: dfe:Dfer_2829 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; anti-FecI sigma factor FecR 2392761 10870610 Runsl_2079 Runella slithyformis DSM 19594 anti-FecI sigma factor FecR YP_004655626.1 2391709 R 761193 CDS YP_004655627.1 338211574 10870611 complement(2392776..2393354) 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; ECF subfamily RNA polymerase sigma-24 subunit 2393354 10870611 Runsl_2080 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004655627.1 2392776 R 761193 CDS YP_004655628.1 338211575 10870612 complement(2393514..2393684) 1 NC_015703.1 COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: bwe:BcerKBAB4_1778 fatty acid desaturase; PFAM: Fatty acid desaturase, type 1; SPTR: fatty acid desaturase; hypothetical protein 2393684 10870612 Runsl_2081 Runella slithyformis DSM 19594 hypothetical protein YP_004655628.1 2393514 R 761193 CDS YP_004655629.1 338211576 10870613 complement(2393735..2394736) 1 NC_015703.1 PFAM: Fatty acid desaturase; InterPro IPR007921; KEGG: shw:Sputw3181_0259 CHAP domain-containing protein; PFAM: Cysteine, histidine-dependent amidohydrolase/peptidase; SPTR: CHAP domain-containing protein; fatty acid desaturase 2394736 10870613 Runsl_2082 Runella slithyformis DSM 19594 fatty acid desaturase YP_004655629.1 2393735 R 761193 CDS YP_004655630.1 338211577 10870614 complement(2394837..2395928) 1 NC_015703.1 PFAM: CHAP domain; InterPro IPR019734:IPR001440; KEGG: ter:Tery_3996 tetratricopeptide TPR_2; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide TPR_2; CHAP domain-containing protein 2395928 10870614 Runsl_2083 Runella slithyformis DSM 19594 CHAP domain-containing protein YP_004655630.1 2394837 R 761193 CDS YP_004655631.1 338211578 10870615 2395991..2397922 1 NC_015703.1 PFAM: Tetratricopeptide repeat; InterPro IPR019734:IPR001440; KEGG: bpo:BP951000_1446 TPR domain-containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: TPR domain-containing protein; hypothetical protein 2397922 10870615 Runsl_2084 Runella slithyformis DSM 19594 hypothetical protein YP_004655631.1 2395991 D 761193 CDS YP_004655632.1 338211579 10870616 2397934..2398173 1 NC_015703.1 PFAM: Tetratricopeptide repeat; InterPro IPR019734:IPR001440; KEGG: npu:Npun_R4324 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Similar to tr|Q8YMK7|Q8YMK7; hypothetical protein 2398173 10870616 Runsl_2085 Runella slithyformis DSM 19594 hypothetical protein YP_004655632.1 2397934 D 761193 CDS YP_004655633.1 338211580 10870617 2398170..2398613 1 NC_015703.1 PFAM: Tetratricopeptide repeat; hypothetical protein 2398613 10870617 Runsl_2086 Runella slithyformis DSM 19594 hypothetical protein YP_004655633.1 2398170 D 761193 CDS YP_004655634.1 338211581 10870618 complement(2398847..2398978) 1 NC_015703.1 KEGG: sli:Slin_1809 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2398978 10870618 Runsl_2087 Runella slithyformis DSM 19594 hypothetical protein YP_004655634.1 2398847 R 761193 CDS YP_004655635.1 338211582 10870619 2399095..2399814 1 NC_015703.1 PFAM: Protein of unknown function (DUF2807); COGs: COG0060 Isoleucyl-tRNA synthetase; HAMAP: Isoleucyl-tRNA synthetase; InterPro IPR002300:IPR013155:IPR002301; KEGG: dfe:Dfer_4664 isoleucyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ia; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; PRIAM: Isoleucine--tRNA ligase; SPTR: Isoleucyl-tRNA synthetase; TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; hypothetical protein 2399814 10870619 Runsl_2088 Runella slithyformis DSM 19594 hypothetical protein YP_004655635.1 2399095 D 761193 CDS YP_004655636.1 338211583 10870620 2399943..2403398 1 NC_015703.1 PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: isoleucyl-tRNA synthetase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_3427 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; isoleucyl-tRNA synthetase 2403398 10870620 Runsl_2089 Runella slithyformis DSM 19594 isoleucyl-tRNA synthetase YP_004655636.1 2399943 D 761193 CDS YP_004655637.1 338211584 10870621 complement(2403468..2404253) 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3920 Signal transduction histidine kinase; InterPro IPR019734:IPR003594:IPR001440:IPR011495; KEGG: sli:Slin_3428 signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor region; Tetratricopeptide TPR-1; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; Tetratricopeptide repeat; SPTR: Signal transduction histidine kinase; LytTR family two component transcriptional regulator 2404253 10870621 Runsl_2090 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004655637.1 2403468 R 761193 CDS YP_004655638.1 338211585 10870622 complement(2404328..2406358) 1 NC_015703.1 PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro IPR004843; KEGG: sli:Slin_0042 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; signal transduction histidine kinase 2406358 10870622 Runsl_2091 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004655638.1 2404328 R 761193 CDS YP_004655639.1 338211586 10870623 2406964..2409828 1 NC_015703.1 PFAM: Calcineurin-like phosphoesterase; InterPro IPR000086; KEGG: dfe:Dfer_3691 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; metallophosphoesterase 2409828 10870623 Runsl_2092 Runella slithyformis DSM 19594 metallophosphoesterase YP_004655639.1 2406964 D 761193 CDS YP_004655640.1 338211587 10870624 complement(2409818..2410327) 1 NC_015703.1 PFAM: NUDIX domain; TIGRFAM: mutator mutT protein; KEGG: sli:Slin_5436 cytoplasmic protein; SPTR: cytoplasmic protein; NUDIX hydrolase 2410327 10870624 Runsl_2093 Runella slithyformis DSM 19594 NUDIX hydrolase YP_004655640.1 2409818 R 761193 CDS YP_004655641.1 338211588 10870625 2410452..2411960 1 NC_015703.1 KEGG: sli:Slin_3498 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2411960 10870625 Runsl_2094 Runella slithyformis DSM 19594 hypothetical protein YP_004655641.1 2410452 D 761193 CDS YP_004655642.1 338211589 10870626 complement(2412065..2414551) 1 NC_015703.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: sli:Slin_3471 gliding motility-associated ABC transporter ATP-binding subunit GldA; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Gliding motility-associated ABC transporter ATP-binding subunit GldA; hypothetical protein 2414551 10870626 Runsl_2095 Runella slithyformis DSM 19594 hypothetical protein YP_004655642.1 2412065 R 761193 CDS YP_004655643.1 338211590 10870627 2414703..2415413 1 NC_015703.1 PFAM: ABC transporter; TIGRFAM: gliding motility-associated ABC transporter ATP-binding subunit GldA; KEGG: dfe:Dfer_4156 hypothetical protein; SPTR: uncharacterized protein; sulfate-transporting ATPase 2415413 10870627 Runsl_2096 Runella slithyformis DSM 19594 sulfate-transporting ATPase YP_004655643.1 2414703 D 761193 CDS YP_004655644.1 338211591 10870628 2415495..2416151 1 NC_015703.1 PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX); COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase; HAMAP: GTP cyclohydrolase-2; InterPro IPR000422:IPR000926; KEGG: sli:Slin_6384 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: DHBP synthase RibB; GTP cyclohydrolase II; SPTR: Riboflavin biosynthesis protein ribBA; TIGRFAM: DHBP synthase RibB; GTP cyclohydrolase II; hypothetical protein 2416151 10870628 Runsl_2097 Runella slithyformis DSM 19594 hypothetical protein YP_004655644.1 2415495 D 761193 CDS YP_004655645.1 338211592 10870629 complement(2416230..2417480) 1 NC_015703.1 PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; KEGG: sli:Slin_6385 hypothetical protein; SPTR: uncharacterized protein; GTP cyclohydrolase-2 2417480 10870629 Runsl_2098 Runella slithyformis DSM 19594 GTP cyclohydrolase-2 YP_004655645.1 2416230 R 761193 CDS YP_004655646.1 338211593 10870630 2417630..2419582 1 NC_015703.1 COGs: COG5337 Spore coat assembly protein; InterPro IPR014867; KEGG: gau:GAU_1784 hypothetical protein; PFAM: Spore coat protein CotH; SPTR: uncharacterized protein; hypothetical protein 2419582 10870630 Runsl_2099 Runella slithyformis DSM 19594 hypothetical protein YP_004655646.1 2417630 D 761193 CDS YP_004655647.1 338211594 10870631 2419892..2421322 1 NC_015703.1 PFAM: CotH protein; InterPro IPR018966; KEGG: hau:Haur_1490 hypothetical protein; PFAM: VTC domain; SPTR: uncharacterized protein; spore coat protein CotH 2421322 10870631 Runsl_2100 Runella slithyformis DSM 19594 spore coat protein CotH YP_004655647.1 2419892 D 761193 CDS YP_004655648.1 338211595 10870632 2421323..2422129 1 NC_015703.1 PFAM: VTC domain; KEGG: dal:Dalk_4019 hypothetical protein; SPTR: uncharacterized protein; VTC domain-containing protein 2422129 10870632 Runsl_2101 Runella slithyformis DSM 19594 VTC domain-containing protein YP_004655648.1 2421323 D 761193 CDS YP_004655649.1 338211596 10870633 2422158..2422820 1 NC_015703.1 InterPro IPR019619; KEGG: bth:BT_3499 hypothetical protein; PFAM: Protein of unknown function DUF2490; SPTR: uncharacterized protein; hypothetical protein 2422820 10870633 Runsl_2102 Runella slithyformis DSM 19594 hypothetical protein YP_004655649.1 2422158 D 761193 CDS YP_004655650.1 338211597 10870634 2422780..2423517 1 NC_015703.1 PFAM: Protein of unknown function (DUF2490); COGs: COG1521 transcriptional regulator protein; HAMAP: Type III pantothenate kinase; InterPro IPR004619; KEGG: dfe:Dfer_4140 transcriptional acitvator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor; SPTR: Type III pantothenate kinase 1; TIGRFAM: Bordetella pertussis Bvg accessory factor; hypothetical protein 2423517 10870634 Runsl_2103 Runella slithyformis DSM 19594 hypothetical protein YP_004655650.1 2422780 D 761193 CDS YP_004655651.1 338211598 10870635 complement(2423555..2424331) 1 NC_015703.1 PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006102:IPR006103:IPR004199; KEGG: dfe:Dfer_4139 beta-galactosidase; PFAM: Glycoside hydrolase 2, TIM barrel; Glycoside hydrolase 2, carbohydrate-binding; Glycoside hydrolase 2, immunoglobulin-like beta-sandwich; Glycoside hydrolase, family 42, domain 5; PRIAM: Beta-galactosidase; SPTR: Beta-galactosidase; Baf family transcriptional acitvator 2424331 10870635 Runsl_2104 Runella slithyformis DSM 19594 Baf family transcriptional acitvator YP_004655651.1 2423555 R 761193 CDS YP_004655652.1 338211599 10870636 2424566..2427967 1 NC_015703.1 PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; Beta galactosidase small chain; COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: sli:Slin_5397 peptidase M16 domain protein; PFAM: Peptidase M16, N-terminal; Peptidase M16, C-terminal; SPTR: Peptidase M16 domain protein; beta-galactosidase 2427967 10870636 Runsl_2105 Runella slithyformis DSM 19594 beta-galactosidase YP_004655652.1 2424566 D 761193 CDS YP_004655653.1 338211600 10870637 complement(2428030..2430834) 1 NC_015703.1 PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16); COGs: COG1739 conserved hypothetical protein; InterPro IPR001498; KEGG: psn:Pedsa_0904 uncharacterized protein family UPF0029, Impact, N-terminal protein; PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; SPTR: uncharacterized protein; peptidase M16 domain-containing protein 2430834 10870637 Runsl_2106 Runella slithyformis DSM 19594 peptidase M16 domain-containing protein YP_004655653.1 2428030 R 761193 CDS YP_004655654.1 338211601 10870638 2431008..2431622 1 NC_015703.1 PFAM: Uncharacterized protein family UPF0029; TIGRFAM: uncharacterized protein, YigZ family; Prodigal; manually curated; hypothetical protein 2431622 10870638 Runsl_2107 Runella slithyformis DSM 19594 hypothetical protein YP_004655654.1 2431008 D 761193 CDS YP_004655655.1 338211602 10870640 complement(2432320..2432958) 1 NC_015703.1 SPTR: uncharacterized protein; hypothetical protein 2432958 10870640 Runsl_2109 Runella slithyformis DSM 19594 hypothetical protein YP_004655655.1 2432320 R 761193 CDS YP_004655656.1 338211603 10870641 complement(2433020..2433949) 1 NC_015703.1 InterPro IPR012910; KEGG: mtt:Ftrac_1561 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; hypothetical protein 2433949 10870641 Runsl_2110 Runella slithyformis DSM 19594 hypothetical protein YP_004655656.1 2433020 R 761193 CDS YP_004655657.1 338211604 10870642 complement(2433933..2436269) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB-dependent receptor plug 2436269 10870642 Runsl_2111 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004655657.1 2433933 R 761193 CDS YP_004655658.1 338211605 10870643 complement(2436272..2437081) 1 NC_015703.1 hypothetical protein 2437081 10870643 Runsl_2112 Runella slithyformis DSM 19594 hypothetical protein YP_004655658.1 2436272 R 761193 CDS YP_004655659.1 338211606 10870644 complement(2437118..2437378) 1 NC_015703.1 KEGG: psn:Pedsa_1651 transcriptional regulator, Crp/Fnr family; SPTR: transcriptional regulator, Crp/Fnr family; hypothetical protein 2437378 10870644 Runsl_2113 Runella slithyformis DSM 19594 hypothetical protein YP_004655659.1 2437118 R 761193 CDS YP_004655660.1 338211607 10870645 complement(2437546..2438193) 1 NC_015703.1 COGs: COG0177 EndoIII-related endonuclease; InterPro IPR003265:IPR003651:IPR005759; KEGG: sli:Slin_6030 endonuclease III; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD domain; SPTR: Endonuclease III; TIGRFAM: Endonuclease III/Nth; Crp/Fnr family transcriptional regulator 2438193 10870645 Runsl_2114 Runella slithyformis DSM 19594 Crp/Fnr family transcriptional regulator YP_004655660.1 2437546 R 761193 CDS YP_004655661.1 338211608 10870646 2438710..2439390 1 NC_015703.1 PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: endonuclease III; COGs: COG1932 Phosphoserine aminotransferase; InterPro IPR000192; KEGG: sli:Slin_1073 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Phosphoserine transaminase; SPTR: Aminotransferase class V; endonuclease III 2439390 10870646 Runsl_2115 Runella slithyformis DSM 19594 endonuclease III YP_004655661.1 2438710 D 761193 CDS YP_004655662.1 338211609 10870647 2439468..2440553 1 NC_015703.1 PFAM: Aminotransferase class-V; TIGRFAM: phosphoserine aminotransferase, COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: sli:Slin_1596 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; phosphoserine transaminase 2440553 10870647 Runsl_2116 Runella slithyformis DSM 19594 phosphoserine transaminase YP_004655662.1 2439468 D 761193 CDS YP_004655663.1 338211610 10870648 2440711..2441328 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); COGs: COG3542 conserved hypothetical protein; InterPro IPR009327; KEGG: sli:Slin_5607 hypothetical protein; PFAM: Protein of unknown function DUF985; SPTR: uncharacterized protein; hypothetical protein 2441328 10870648 Runsl_2117 Runella slithyformis DSM 19594 hypothetical protein YP_004655663.1 2440711 D 761193 CDS YP_004655664.1 338211611 10870649 complement(2441342..2441845) 1 NC_015703.1 PFAM: Cupin superfamily (DUF985); COGs: COG0024 Methionine aminopeptidase; InterPro IPR000994:IPR002467; KEGG: cpi:Cpin_0635 methionine aminopeptidase, type I; PFAM: Peptidase M24, structural domain; PRIAM: Methionyl aminopeptidase; SPTR: Methionine aminopeptidase; TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; hypothetical protein 2441845 10870649 Runsl_2118 Runella slithyformis DSM 19594 hypothetical protein YP_004655664.1 2441342 R 761193 CDS YP_004655665.1 338211612 10870650 complement(2441848..2442612) 1 NC_015703.1 PFAM: Metallopeptidase M24; TIGRFAM: methionine aminopeptidase, type I; COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544; KEGG: dfe:Dfer_3559 aminotransferase class IV; PFAM: Aminotransferase, class IV; PRIAM: D-amino-acid transaminase; SPTR: Aminotransferase class IV; methionine aminopeptidase 2442612 10870650 Runsl_2119 Runella slithyformis DSM 19594 methionine aminopeptidase YP_004655665.1 2441848 R 761193 CDS YP_004655666.1 338211613 10870651 complement(2442759..2443592) 1 NC_015703.1 PFAM: Aminotransferase class IV; KEGG: lby:Lbys_2831 TonB-dependent receptor; SPTR: TonB-dependent receptor; D-amino-acid transaminase 2443592 10870651 Runsl_2120 Runella slithyformis DSM 19594 D-amino-acid transaminase YP_004655666.1 2442759 R 761193 CDS YP_004655667.1 338211614 10870652 2443754..2446642 1 NC_015703.1 InterPro IPR019115; KEGG: sli:Slin_3442 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: uncharacterized protein; TonB-dependent receptor 2446642 10870652 Runsl_2121 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004655667.1 2443754 D 761193 CDS YP_004655668.1 338211615 10870653 2446704..2447435 1 NC_015703.1 PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; COGs: COG5002 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: lby:Lbys_2833 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Integral membrane sensor signal transduction histidine kinase; hypothetical protein 2447435 10870653 Runsl_2122 Runella slithyformis DSM 19594 hypothetical protein YP_004655668.1 2446704 D 761193 CDS YP_004655669.1 338211616 10870654 2447486..2449321 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: lby:Lbys_2834 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family; integral membrane sensor signal transduction histidine kinase 2449321 10870654 Runsl_2123 Runella slithyformis DSM 19594 integral membrane sensor signal transduction histidine kinase YP_004655669.1 2447486 D 761193 CDS YP_004655670.1 338211617 10870655 2449353..2450042 1 NC_015703.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; InterPro IPR008631; KEGG: dfe:Dfer_3735 glycogen (starch) synthase; PFAM: Glycogen synthase; PRIAM: Glycogen(starch) synthase; SPTR: Glycogen (Starch) synthase; winged helix family two component transcriptional regulator 2450042 10870655 Runsl_2124 Runella slithyformis DSM 19594 winged helix family two component transcriptional regulator YP_004655670.1 2449353 D 761193 CDS YP_004655671.1 338211618 10870656 2450516..2452333 1 NC_015703.1 PFAM: Glycogen synthase; COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: chu:CHU_2256 Zn-dependent hydrolase; SPTR: Possible Zn-dependent hydrolase; glycogen(starch) synthase 2452333 10870656 Runsl_2125 Runella slithyformis DSM 19594 glycogen(starch) synthase YP_004655671.1 2450516 D 761193 CDS YP_004655672.1 338211619 10870657 complement(2452379..2453524) 1 NC_015703.1 COGs: COG4299 conserved hypothetical protein; InterPro IPR019259; KEGG: dfe:Dfer_2495 hypothetical protein; PFAM: Protein of unknown function DUF2261, transmembrane; SPTR: uncharacterized protein; Zn-dependent hydrolase 2453524 10870657 Runsl_2126 Runella slithyformis DSM 19594 Zn-dependent hydrolase YP_004655672.1 2452379 R 761193 CDS YP_004655673.1 338211620 10870658 2453608..2454789 1 NC_015703.1 COGs: COG0730 permease; InterPro IPR002781; KEGG: fjo:Fjoh_1500 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: uncharacterized protein; hypothetical protein 2454789 10870658 Runsl_2127 Runella slithyformis DSM 19594 hypothetical protein YP_004655673.1 2453608 D 761193 CDS YP_004655674.1 338211621 10870659 2454995..2455900 1 NC_015703.1 PFAM: Sulfite exporter TauE/SafE; COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277; KEGG: dfe:Dfer_2612 cystathionine gamma-synthase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; SPTR: Cystathionine gamma-synthase; hypothetical protein 2455900 10870659 Runsl_2128 Runella slithyformis DSM 19594 hypothetical protein YP_004655674.1 2454995 D 761193 CDS YP_004655675.1 338211622 10870660 2456008..2457198 1 NC_015703.1 PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: O-succinylhomoserine sulfhydrylase; COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; InterPro IPR002500:IPR004511:IPR011798; KEGG: dfe:Dfer_2615 adenylylsulfate reductase, thioredoxin dependent; PFAM: Phosphoadenosine phosphosulphate reductase; PRIAM: Phosphoadenylyl-sulfate reductase (thioredoxin); SPTR: Adenylylsulfate reductase, thioredoxin dependent; TIGRFAM: Adenylylsulphate reductase, thioredoxin dependent; Phosphoadenosine phosphosulphate reductase CysH-type; Cys/Met metabolism pyridoxal-phosphate-dependent protein 2457198 10870660 Runsl_2129 Runella slithyformis DSM 19594 Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_004655675.1 2456008 D 761193 CDS YP_004655676.1 338211623 10870661 2457221..2457934 1 NC_015703.1 PFAM: Phosphoadenosine phosphosulfate reductase; TIGRFAM: thioredoxin-dependent adenylylsulfate APS reductase; phosophoadenylyl-sulfate reductase (thioredoxin); InterPro IPR008815; KEGG: mtt:Ftrac_1685 s23 ribosomal protein; PFAM: 23S rRNA-associated protein; SPTR: Intervening sequence; adenylylsulfate reductase 2457934 10870661 Runsl_2130 Runella slithyformis DSM 19594 adenylylsulfate reductase YP_004655676.1 2457221 D 761193 CDS YP_004655677.1 338211624 10870662 2458020..2458385 1 NC_015703.1 PFAM: S23 ribosomal protein; COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; InterPro IPR002500:IPR011784; KEGG: dfe:Dfer_2616 sulfate adenylyltransferase subunit 2; PFAM: Phosphoadenosine phosphosulphate reductase; PRIAM: Sulfate adenylyltransferase; SPTR: Sulfate adenylyltransferase, small subunit; TIGRFAM: Sulphate adenylyltransferase, small subunit; S23 ribosomal protein 2458385 10870662 Runsl_2131 Runella slithyformis DSM 19594 S23 ribosomal protein YP_004655677.1 2458020 D 761193 CDS YP_004655678.1 338211625 10870663 2458389..2459321 1 NC_015703.1 PFAM: Phosphoadenosine phosphosulfate reductase; TIGRFAM: sulfate adenylyltransferase, small subunit; COGs: COG2895 GTPase - Sulfate adenylate transferase subunit 1; InterPro IPR000795:IPR004161:IPR005225:IPR011779; KEGG: dfe:Dfer_2617 sulfate adenylyltransferase, large subunit; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; PRIAM: Sulfate adenylyltransferase; SPTR: Sulfate adenylyltransferase, large subunit; TIGRFAM: Sulphate adenylyltransferase, large subunit; Small GTP-binding protein; sulfate adenylyltransferase, small subunit 2459321 10870663 Runsl_2132 Runella slithyformis DSM 19594 sulfate adenylyltransferase, small subunit YP_004655678.1 2458389 D 761193 CDS YP_004655679.1 338211626 10870664 2459405..2460652 1 NC_015703.1 PFAM: Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: sulfate adenylyltransferase, large subunit; small GTP-binding protein domain; COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: sli:Slin_0456 glycosyl hydrolase 88; PFAM: Glycosyl hydrolase, family 88; SPTR: Glycosyl hydrolase 88; sulfate adenylyltransferase, large subunit 2460652 10870664 Runsl_2133 Runella slithyformis DSM 19594 sulfate adenylyltransferase, large subunit YP_004655679.1 2459405 D 761193 CDS YP_004655680.1 338211627 10870665 2461003..2462376 1 NC_015703.1 PFAM: Glycosyl Hydrolase 88; Prodigal; manually curated; glycoside hydrolase 2462376 10870665 Runsl_2134 Runella slithyformis DSM 19594 glycoside hydrolase YP_004655680.1 2461003 D 761193 CDS YP_004655681.1 338211628 10870667 complement(2462559..2463713) 1 NC_015703.1 COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: sli:Slin_1806 glycosyl hydrolase 88; PFAM: Glycosyl hydrolase, family 88; SPTR: Glycosyl hydrolase 88; ATPase AAA 2463713 10870667 Runsl_2136 Runella slithyformis DSM 19594 ATPase AAA YP_004655681.1 2462559 R 761193 CDS YP_004655682.1 338211629 10870668 2463796..2464917 1 NC_015703.1 PFAM: Glycosyl Hydrolase 88; COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR000524; KEGG: sli:Slin_3237 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; SPTR: Transcriptional regulator, GntR family; glycoside hydrolase 2464917 10870668 Runsl_2137 Runella slithyformis DSM 19594 glycoside hydrolase YP_004655682.1 2463796 D 761193 CDS YP_004655683.1 338211630 10870669 complement(2465018..2466304) 1 NC_015703.1 PFAM: Bacterial regulatory proteins, gntR family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_4386 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; GntR family transcriptional regulator 2466304 10870669 Runsl_2138 Runella slithyformis DSM 19594 GntR family transcriptional regulator YP_004655683.1 2465018 R 761193 CDS YP_004655684.1 338211631 10870670 complement(2466426..2467205) 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; KEGG: dfe:Dfer_4105 hypothetical protein; SPTR: uncharacterized protein; LytTR family two component transcriptional regulator 2467205 10870670 Runsl_2139 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004655684.1 2466426 R 761193 CDS YP_004655685.1 338211632 10870671 2467217..2467936 1 NC_015703.1 COGs: COG4232 Thiol:disulfide interchange protein; InterPro IPR003834; KEGG: dfe:Dfer_4173 cytochrome c biogenesis protein transmembrane region; PFAM: Cytochrome c assembly protein, transmembrane region; PRIAM: Protein-disulfide reductase; SPTR: Cytochrome c biogenesis protein transmembrane region; hypothetical protein 2467936 10870671 Runsl_2140 Runella slithyformis DSM 19594 hypothetical protein YP_004655685.1 2467217 D 761193 CDS YP_004655686.1 338211633 10870672 2467972..2470029 1 NC_015703.1 PFAM: Cytochrome C biogenesis protein transmembrane region; Protein of unknown function, DUF255; COGs: COG0795 permease; InterPro IPR005495; KEGG: sli:Slin_2956 permease YjgP/YjgQ family protein; PFAM: Permease YjgP/YjgQ, predicted; SPTR: Permease YjgP/YjgQ family protein; protein-disulfide reductase 2470029 10870672 Runsl_2141 Runella slithyformis DSM 19594 protein-disulfide reductase YP_004655686.1 2467972 D 761193 CDS YP_004655687.1 338211634 10870673 2470229..2471305 1 NC_015703.1 PFAM: Predicted permease YjgP/YjgQ family; YjgP/YjgQ family permease 2471305 10870673 Runsl_2142 Runella slithyformis DSM 19594 YjgP/YjgQ family permease YP_004655687.1 2470229 D 761193 CDS YP_004655688.1 338211635 10870674 2471413..2471634 1 NC_015703.1 KEGG: sli:Slin_5131 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2471634 10870674 Runsl_2143 Runella slithyformis DSM 19594 hypothetical protein YP_004655688.1 2471413 D 761193 CDS YP_004655689.1 338211636 10870675 2471624..2471959 1 NC_015703.1 PFAM: Protein of unknown function (DUF1044); COGs: COG0308 Aminopeptidase N; KEGG: sli:Slin_5082 Zn-dependent aminopeptidase; SPTR: Zn-dependent aminopeptidase; hypothetical protein 2471959 10870675 Runsl_2144 Runella slithyformis DSM 19594 hypothetical protein YP_004655689.1 2471624 D 761193 CDS YP_004655690.1 338211637 10870676 2471956..2474328 1 NC_015703.1 PFAM: Peptidase M1; COGs: COG3173 aminoglycoside phosphotransferase; InterPro IPR002575; KEGG: sli:Slin_1393 aminoglycoside phosphotransferase; PFAM: Aminoglycoside phosphotransferase; SPTR: Aminoglycoside phosphotransferase; Zn-dependent aminopeptidase 2474328 10870676 Runsl_2145 Runella slithyformis DSM 19594 Zn-dependent aminopeptidase YP_004655690.1 2471956 D 761193 CDS YP_004655691.1 338211638 10870677 2474434..2475507 1 NC_015703.1 PFAM: Phosphotransferase enzyme family; KEGG: dfe:Dfer_1194 hypothetical protein; SPTR: uncharacterized protein; aminoglycoside phosphotransferase 2475507 10870677 Runsl_2146 Runella slithyformis DSM 19594 aminoglycoside phosphotransferase YP_004655691.1 2474434 D 761193 CDS YP_004655692.1 338211639 10870678 complement(2475565..2475903) 1 NC_015703.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_3233 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; hypothetical protein 2475903 10870678 Runsl_2147 Runella slithyformis DSM 19594 hypothetical protein YP_004655692.1 2475565 R 761193 CDS YP_004655693.1 338211640 10870679 complement(2475981..2477312) 1 NC_015703.1 PFAM: Outer membrane efflux protein; COGs: COG1574 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR013108; KEGG: sli:Slin_3234 amidohydrolase; PFAM: Amidohydrolase 3; SPTR: Amidohydrolase 3; outer membrane efflux protein 2477312 10870679 Runsl_2148 Runella slithyformis DSM 19594 outer membrane efflux protein YP_004655693.1 2475981 R 761193 CDS YP_004655694.1 338211641 10870680 2477466..2479097 1 NC_015703.1 PFAM: Amidohydrolase; KEGG: cpi:Cpin_0983 hypothetical protein; SPTR: uncharacterized protein; amidohydrolase 2479097 10870680 Runsl_2149 Runella slithyformis DSM 19594 amidohydrolase YP_004655694.1 2477466 D 761193 CDS YP_004655695.1 338211642 10870681 2479278..2479652 1 NC_015703.1 hypothetical protein 2479652 10870681 Runsl_2150 Runella slithyformis DSM 19594 hypothetical protein YP_004655695.1 2479278 D 761193 CDS YP_004655696.1 338211643 10870682 2479594..2480019 1 NC_015703.1 KEGG: dfe:Dfer_2869 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2480019 10870682 Runsl_2151 Runella slithyformis DSM 19594 hypothetical protein YP_004655696.1 2479594 D 761193 CDS YP_004655697.1 338211644 10870683 2480399..2481598 1 NC_015703.1 KEGG: lby:Lbys_0531 peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: Peptidase S8 and S53 subtilisin kexin sedolisin; hypothetical protein 2481598 10870683 Runsl_2152 Runella slithyformis DSM 19594 hypothetical protein YP_004655697.1 2480399 D 761193 CDS YP_004655698.1 338211645 10870684 2481543..2481893 1 NC_015703.1 InterPro IPR005821; KEGG: sli:Slin_0024 ion transporter; PFAM: Ion transport; SPTR: Ion transport protein; peptidase S8 and S53 subtilisin kexin sedolisin 2481893 10870684 Runsl_2153 Runella slithyformis DSM 19594 peptidase S8 and S53 subtilisin kexin sedolisin YP_004655698.1 2481543 D 761193 CDS YP_004655699.1 338211646 10870685 2482021..2482866 1 NC_015703.1 PFAM: Ion transport protein; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dfe:Dfer_2953 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; ion transport protein 2482866 10870685 Runsl_2154 Runella slithyformis DSM 19594 ion transport protein YP_004655699.1 2482021 D 761193 CDS YP_004655700.1 338211647 10870686 2482866..2483999 1 NC_015703.1 PFAM: Glycosyl transferases group 1; COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR001678; KEGG: sli:Slin_5890 Fmu (Sun) domain protein; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; SPTR: Fmu (Sun) domain protein; group 1 glycosyl transferase 2483999 10870686 Runsl_2155 Runella slithyformis DSM 19594 group 1 glycosyl transferase YP_004655700.1 2482866 D 761193 CDS YP_004655701.1 338211648 10870687 2484086..2485444 1 NC_015703.1 PFAM: NOL1/NOP2/sun family; KEGG: atm:ANT_29240 glycosyltransferase; SPTR: glycosyltransferase; Fmu (Sun) domain-containing protein 2485444 10870687 Runsl_2156 Runella slithyformis DSM 19594 Fmu (Sun) domain-containing protein YP_004655701.1 2484086 D 761193 CDS YP_004655702.1 338211649 10870688 2485569..2486609 1 NC_015703.1 hypothetical protein 2486609 10870688 Runsl_2157 Runella slithyformis DSM 19594 hypothetical protein YP_004655702.1 2485569 D 761193 CDS YP_004655703.1 338211650 10870689 complement(2486520..2486732) 1 NC_015703.1 InterPro IPR012910:IPR000531; KEGG: cpi:Cpin_3725 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; hypothetical protein 2486732 10870689 Runsl_2158 Runella slithyformis DSM 19594 hypothetical protein YP_004655703.1 2486520 R 761193 CDS YP_004655704.1 338211651 10870690 complement(2486732..2489686) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; KEGG: chu:CHU_1318 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor 2489686 10870690 Runsl_2159 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004655704.1 2486732 R 761193 CDS YP_004655705.1 338211652 10870691 2489797..2490906 1 NC_015703.1 PFAM: Protein of unknown function (DUF3089); hypothetical protein 2490906 10870691 Runsl_2160 Runella slithyformis DSM 19594 hypothetical protein YP_004655705.1 2489797 D 761193 CDS YP_004655706.1 338211653 10870692 complement(2490879..2490986) 1 NC_015703.1 COGs: COG0836 Mannose-1-phosphate guanylyltransferase; InterPro IPR005835; KEGG: sli:Slin_5196 mannose-1-phosphate guanylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Mannose-1-phosphate guanylyltransferase; SPTR: Mannose-1-phosphate guanylyltransferase; manually curated; hypothetical protein 2490986 10870692 Runsl_2161 Runella slithyformis DSM 19594 hypothetical protein YP_004655706.1 2490879 R 761193 CDS YP_004655707.1 338211654 10870693 2490992..2492059 1 NC_015703.1 PFAM: Nucleotidyl transferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006175; KEGG: nde:NIDE0050 endoribonuclease L-PSP, YjgF-like; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP; mannose-1-phosphate guanylyltransferase 2492059 10870693 Runsl_2162 Runella slithyformis DSM 19594 mannose-1-phosphate guanylyltransferase YP_004655707.1 2490992 D 761193 CDS YP_004655708.1 338211655 10870694 complement(2492116..2492505) 1 NC_015703.1 PFAM: Endoribonuclease L-PSP; COGs: COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; HAMAP: Molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: sli:Slin_2808 hypothetical protein; SPTR: Molybdenum cofactor biosynthesis protein C; endoribonuclease L-PSP 2492505 10870694 Runsl_2163 Runella slithyformis DSM 19594 endoribonuclease L-PSP YP_004655708.1 2492116 R 761193 CDS YP_004655709.1 338211656 10870695 complement(2492623..2493180) 1 NC_015703.1 COGs: COG0429 hydrolase of the alpha/beta-hydrolase fold; InterPro IPR000073; KEGG: dfe:Dfer_4689 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; molybdopterin-guanine dinucleotide biosynthesis protein A 2493180 10870695 Runsl_2164 Runella slithyformis DSM 19594 molybdopterin-guanine dinucleotide biosynthesis protein A YP_004655709.1 2492623 R 761193 CDS YP_004655710.1 338211657 10870696 complement(2493177..2494172) 1 NC_015703.1 PFAM: alpha/beta hydrolase fold; COGs: COG0274 Deoxyribose-phosphate aldolase; InterPro IPR002915; KEGG: sli:Slin_4419 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; SPTR: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; alpha/beta hydrolase 2494172 10870696 Runsl_2165 Runella slithyformis DSM 19594 alpha/beta hydrolase YP_004655710.1 2493177 R 761193 CDS YP_004655711.1 338211658 10870697 complement(2494213..2494842) 1 NC_015703.1 PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase; InterPro IPR000209; KEGG: sli:Slin_5990 hypothetical protein; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: uncharacterized protein; deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase 2494842 10870697 Runsl_2166 Runella slithyformis DSM 19594 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_004655711.1 2494213 R 761193 CDS YP_004655712.1 338211659 10870698 complement(2494855..2497659) 1 NC_015703.1 PFAM: Subtilase; InterPro IPR000209; KEGG: sli:Slin_5991 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Peptidase S8 and S53 subtilisin kexin sedolisin; peptidase S8 and S53 subtilisin kexin sedolisin 2497659 10870698 Runsl_2167 Runella slithyformis DSM 19594 peptidase S8 and S53 subtilisin kexin sedolisin YP_004655712.1 2494855 R 761193 CDS YP_004655713.1 338211660 10870699 complement(2497683..2501696) 1 NC_015703.1 PFAM: Subtilase; InterPro IPR004691:IPR018402; KEGG: sli:Slin_1551 malonate transporter MadM subunit; PFAM: Malonate/sodium symporter MadM subunit, N-terminal; SPTR: Malonate transporter, MadM subunit; TIGRFAM: Malonate/sodium symporter MadM subunit; peptidase S8 and S53 subtilisin kexin sedolisin 2501696 10870699 Runsl_2168 Runella slithyformis DSM 19594 peptidase S8 and S53 subtilisin kexin sedolisin YP_004655713.1 2497683 R 761193 CDS YP_004655714.1 338211661 10870700 complement(2501816..2502580) 1 NC_015703.1 PFAM: Malonate/sodium symporter MadM subunit; TIGRFAM: malonate transporter, MadM subunit; InterPro IPR004690; KEGG: sli:Slin_1552 malonate transporter MadL subunit; PFAM: Malonate transporter MadL subunit; SPTR: Malonate transporter, MadL subunit; TIGRFAM: Malonate transporter MadL subunit; malonate transporter subunit MadM 2502580 10870700 Runsl_2169 Runella slithyformis DSM 19594 malonate transporter subunit MadM YP_004655714.1 2501816 R 761193 CDS YP_004655715.1 338211662 10870701 complement(2502583..2502951) 1 NC_015703.1 PFAM: Malonate transporter MadL subunit; TIGRFAM: malonate transporter, MadL subunit; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: sli:Slin_1553 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: AMP-dependent synthetase and ligase; malonate transporter subunit MadL 2502951 10870701 Runsl_2170 Runella slithyformis DSM 19594 malonate transporter subunit MadL YP_004655715.1 2502583 R 761193 CDS YP_004655716.1 338211663 10870702 complement(2502998..2504482) 1 NC_015703.1 PFAM: AMP-binding enzyme; COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593:IPR011579; KEGG: mtt:Ftrac_2734 hypothetical protein; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; long-chain-fatty-acid--CoA ligase 2504482 10870702 Runsl_2171 Runella slithyformis DSM 19594 long-chain-fatty-acid--CoA ligase YP_004655716.1 2502998 R 761193 CDS YP_004655717.1 338211664 10870703 2504784..2506139 1 NC_015703.1 PFAM: Nuclease-related domain; COGs: COG1284 conserved hypothetical protein; InterPro IPR003740:IPR019264; KEGG: sli:Slin_1588 hypothetical protein; PFAM: Protein of unknown function DUF2179; Protein of unknown function DUF161; SPTR: uncharacterized protein; ATPase AAA 2506139 10870703 Runsl_2172 Runella slithyformis DSM 19594 ATPase AAA YP_004655717.1 2504784 D 761193 CDS YP_004655718.1 338211665 10870704 complement(2506494..2507363) 1 NC_015703.1 PFAM: Uncharacterized BCR, YitT family COG1284; Uncharacterized protein conserved in bacteria (DUF2179); manually curated; hypothetical protein 2507363 10870704 Runsl_2173 Runella slithyformis DSM 19594 hypothetical protein YP_004655718.1 2506494 R 761193 CDS YP_004655719.1 338211666 10870706 2507714..2508226 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: sli:Slin_3447 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; AraC family transcriptional regulator 2508226 10870706 Runsl_2175 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004655719.1 2507714 D 761193 CDS YP_004655720.1 338211667 10870707 2508304..2508897 1 NC_015703.1 PFAM: Acyltransferase; COGs: COG0381 UDP-N-acetylglucosamine 2-epimerase; InterPro IPR003331; KEGG: acd:AOLE_19095 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; PRIAM: UDP-N-acetylglucosamine 2-epimerase; SPTR: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; phospholipid/glycerol acyltransferase 2508897 10870707 Runsl_2176 Runella slithyformis DSM 19594 phospholipid/glycerol acyltransferase YP_004655720.1 2508304 D 761193 CDS YP_004655721.1 338211668 10870708 complement(2508961..2510079) 1 NC_015703.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; COGs: COG1393 Arsenate reductase and related protein glutaredoxin family; InterPro IPR006504:IPR006660; KEGG: bpl:BURPS1106A_2506 ArsC family protein; PFAM: Arsenate reductase-like; SPTR: ArsC family protein; TIGRFAM: Conserved hypothetical protein, ArsC related; UDP-N-acetylglucosamine 2-epimerase 2510079 10870708 Runsl_2177 Runella slithyformis DSM 19594 UDP-N-acetylglucosamine 2-epimerase YP_004655721.1 2508961 R 761193 CDS YP_004655722.1 338211669 10870709 complement(2510169..2510513) 1 NC_015703.1 PFAM: ArsC family; TIGRFAM: transcriptional regulator, Spx/MgsR family; KEGG: sli:Slin_1736 hypothetical protein; SPTR: uncharacterized protein; ArsC family protein 2510513 10870709 Runsl_2178 Runella slithyformis DSM 19594 ArsC family protein YP_004655722.1 2510169 R 761193 CDS YP_004655723.1 338211670 10870710 2510587..2511021 1 NC_015703.1 COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_3963 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; hypothetical protein 2511021 10870710 Runsl_2179 Runella slithyformis DSM 19594 hypothetical protein YP_004655723.1 2510587 D 761193 CDS YP_004655724.1 338211671 10870711 complement(2511051..2511797) 1 NC_015703.1 PFAM: ABC transporter; COGs: COG0805 Sec-independent protein secretion pathway component TatC; InterPro IPR019822:IPR002033; KEGG: dfe:Dfer_3888 sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; SPTR: Sec-independent protein translocase, TatC subunit; TIGRFAM: Twin arginine-targeting protein translocase, TatC; phosphonate-transporting ATPase 2511797 10870711 Runsl_2180 Runella slithyformis DSM 19594 phosphonate-transporting ATPase YP_004655724.1 2511051 R 761193 CDS YP_004655725.1 338211672 10870712 complement(2511804..2512706) 1 NC_015703.1 PFAM: Sec-independent protein translocase (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC; KEGG: dfe:Dfer_4243 hypothetical protein; SPTR: uncharacterized protein; Sec-independent protein translocase subunit TatC 2512706 10870712 Runsl_2181 Runella slithyformis DSM 19594 Sec-independent protein translocase subunit TatC YP_004655725.1 2511804 R 761193 CDS YP_004655726.1 338211673 10870713 2513006..2513434 1 NC_015703.1 COGs: COG1646 phosphate-binding protein with TIM-barrel fold; HAMAP: Geranylgeranylglyceryl phosphate synthase; InterPro IPR010946:IPR008205; KEGG: dfe:Dfer_4244 geranylgeranylglyceryl phosphate synthase-like protein; PFAM: Geranylgeranylglyceryl phosphate synthase-like; SPTR: Geranylgeranylglyceryl phosphate synthase; TIGRFAM: Geranylgeranylglyceryl phosphate synthase; Geranylgeranylglyceryl phosphate synthase-like; hypothetical protein 2513434 10870713 Runsl_2182 Runella slithyformis DSM 19594 hypothetical protein YP_004655726.1 2513006 D 761193 CDS YP_004655727.1 338211674 10870714 2513400..2514161 1 NC_015703.1 PFAM: PcrB family; TIGRFAM: geranylgeranylglyceryl phosphate synthase; phosphoglycerol geranylgeranyltransferase; KEGG: sli:Slin_0252 hypothetical protein; SPTR: uncharacterized protein; geranylgeranylglyceryl phosphate synthase 2514161 10870714 Runsl_2183 Runella slithyformis DSM 19594 geranylgeranylglyceryl phosphate synthase YP_004655727.1 2513400 D 761193 CDS YP_004655728.1 338211675 10870715 complement(2514172..2515719) 1 NC_015703.1 COGs: COG0018 Arginyl-tRNA synthetase; HAMAP: Arginyl-tRNA synthetase, class Ic; InterPro IPR001278:IPR005148:IPR015945:IPR008909; KEGG: dfe:Dfer_2678 arginyl-tRNA synthetase; PFAM: DALR anticodon binding; Arginyl-tRNA synthetase, class Ic, core; Arginyl tRNA synthetase, class Ic, N-terminal; PRIAM: Arginine--tRNA ligase; SPTR: Arginyl-tRNA synthetase; TIGRFAM: Arginyl-tRNA synthetase, class Ic; hypothetical protein 2515719 10870715 Runsl_2184 Runella slithyformis DSM 19594 hypothetical protein YP_004655728.1 2514172 R 761193 CDS YP_004655729.1 338211676 10870716 2515990..2517768 1 NC_015703.1 PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase; InterPro IPR000182; KEGG: npu:Npun_R0931 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; arginyl-tRNA synthetase 2517768 10870716 Runsl_2185 Runella slithyformis DSM 19594 arginyl-tRNA synthetase YP_004655729.1 2515990 D 761193 CDS YP_004655730.1 338211677 10870717 complement(2517817..2518278) 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR004527:IPR020058; KEGG: dfe:Dfer_4262 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; PRIAM: Glutamate--tRNA ligase; SPTR: Glutamyl-tRNA synthetase; TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; N-acetyltransferase GCN5 2518278 10870717 Runsl_2186 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004655730.1 2517817 R 761193 CDS YP_004655731.1 338211678 10870718 2518473..2519990 1 NC_015703.1 PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: dfe:Dfer_3647 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; glutamyl-tRNA synthetase 2519990 10870718 Runsl_2187 Runella slithyformis DSM 19594 glutamyl-tRNA synthetase YP_004655731.1 2518473 D 761193 CDS YP_004655732.1 338211679 10870719 2520026..2520676 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR010140:IPR004013; KEGG: tro:trd_A0397 histidinol-phosphatase; PFAM: PHP, C-terminal; SPTR: histidinol-phosphatase; TIGRFAM: Histidinol phosphate phosphatase, HisJ; hypothetical protein 2520676 10870719 Runsl_2188 Runella slithyformis DSM 19594 hypothetical protein YP_004655732.1 2520026 D 761193 CDS YP_004655733.1 338211680 10870720 2520673..2521557 1 NC_015703.1 PFAM: PHP domain; TIGRFAM: histidinol phosphate phosphatase HisJ family; KEGG: phe:Phep_3158 hypothetical protein; HisJ family histidinol phosphate phosphatase 2521557 10870720 Runsl_2189 Runella slithyformis DSM 19594 HisJ family histidinol phosphate phosphatase YP_004655733.1 2520673 D 761193 CDS YP_004655734.1 338211681 10870721 complement(2521606..2522070) 1 NC_015703.1 COGs: COG1476 transcriptional regulator protein; InterPro IPR001387; KEGG: sli:Slin_0313 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: uncharacterized protein; hypothetical protein 2522070 10870721 Runsl_2190 Runella slithyformis DSM 19594 hypothetical protein YP_004655734.1 2521606 R 761193 CDS YP_004655735.1 338211682 10870722 complement(2522193..2522393) 1 NC_015703.1 PFAM: Helix-turn-helix; KEGG: sli:Slin_0312 hypothetical protein; SPTR: uncharacterized protein; XRE family transcriptional regulator 2522393 10870722 Runsl_2191 Runella slithyformis DSM 19594 XRE family transcriptional regulator YP_004655735.1 2522193 R 761193 CDS YP_004655736.1 338211683 10870723 complement(2522390..2522887) 1 NC_015703.1 COGs: COG1528 Ferritin-like protein; InterPro IPR008331; KEGG: dfe:Dfer_2507 ferritin Dps family protein; PFAM: Ferritin/Dps protein; SPTR: Ferritin Dps family protein; hypothetical protein 2522887 10870723 Runsl_2192 Runella slithyformis DSM 19594 hypothetical protein YP_004655736.1 2522390 R 761193 CDS YP_004655737.1 338211684 10870724 complement(2523058..2523603) 1 NC_015703.1 PFAM: Ferritin-like domain; InterPro IPR006104; KEGG: dfe:Dfer_3461 hypothetical protein; PFAM: Glycoside hydrolase 2, carbohydrate-binding; SPTR: uncharacterized protein; ferritin 2523603 10870724 Runsl_2193 Runella slithyformis DSM 19594 ferritin YP_004655737.1 2523058 R 761193 CDS YP_004655738.1 338211685 10870725 2523804..2526428 1 NC_015703.1 PFAM: Glycosyl hydrolases family 2, sugar binding domain; KEGG: sli:Slin_4047 hypothetical protein; SPTR: uncharacterized protein; glycoside hydrolase 2526428 10870725 Runsl_2194 Runella slithyformis DSM 19594 glycoside hydrolase YP_004655738.1 2523804 D 761193 CDS YP_004655739.1 338211686 10870726 2526614..2527771 1 NC_015703.1 COGs: COG1859 RNA:NAD 2'-phosphotransferase; HAMAP: RNA 2'-phosphotransferase; InterPro IPR002745; KEGG: ava:Ava_4639 RNA 2'-phosphotransferase-like protein; PFAM: Phosphotransferase KptA/Tpt1; SPTR: Probable RNA 2'-phosphotransferase; hypothetical protein 2527771 10870726 Runsl_2195 Runella slithyformis DSM 19594 hypothetical protein YP_004655739.1 2526614 D 761193 CDS YP_004655740.1 338211687 10870727 2527756..2528307 1 NC_015703.1 PFAM: RNA 2'-phosphotransferase, Tpt1 / KptA family; COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR013216:IPR001310; KEGG: sli:Slin_4049 histidine triad (HIT) protein; PFAM: Histidine triad (HIT) protein; Methyltransferase type 11; SPTR: Histidine triad (HIT) protein; RNA 2'-phosphotransferase 2528307 10870727 Runsl_2196 Runella slithyformis DSM 19594 RNA 2'-phosphotransferase YP_004655740.1 2527756 D 761193 CDS YP_004655741.1 338211688 10870728 2528291..2529136 1 NC_015703.1 PFAM: HIT domain; KEGG: bfr:BF2709 hypothetical protein; SPTR: uncharacterized protein; histidine triad (HIT) protein 2529136 10870728 Runsl_2197 Runella slithyformis DSM 19594 histidine triad (HIT) protein YP_004655741.1 2528291 D 761193 CDS YP_004655742.1 338211689 10870729 2529288..2530004 1 NC_015703.1 PFAM: RNA ligase; COGs: COG4639 kinase; KEGG: cpi:Cpin_6277 hypothetical protein; SPTR: tRNA nucleotidyltransferase/poly(A) polymerase; hypothetical protein 2530004 10870729 Runsl_2198 Runella slithyformis DSM 19594 hypothetical protein YP_004655742.1 2529288 D 761193 CDS YP_004655743.1 338211690 10870730 2529985..2531091 1 NC_015703.1 PFAM: HD domain; COGs: COG0514 Superfamily II DNA helicase; InterProIPR006293:IPR018329:IPR014001:IPR001650:IPR 002121:IPR011545:IPR018982; KEGG: dfe:Dfer_3877 ATP-dependent DNA helicase RecQ; PFAM: RQC domain; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type, N-terminal; hypothetical protein 2531091 10870730 Runsl_2199 Runella slithyformis DSM 19594 hypothetical protein YP_004655743.1 2529985 D 761193 CDS YP_004655744.1 338211691 10870731 2531337..2533484 1 NC_015703.1 PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; COGs: COG1770 Protease II; InterPro IPR004106:IPR001375; KEGG: sli:Slin_4734 oligopeptidase B; PFAM: Peptidase S9A, oligopeptidase, N-terminal beta-propeller; Peptidase S9, prolyl oligopeptidase, catalytic domain; PRIAM: Oligopeptidase B; SPTR: Oligopeptidase B; ATP-dependent DNA helicase RecQ 2533484 10870731 Runsl_2200 Runella slithyformis DSM 19594 ATP-dependent DNA helicase RecQ YP_004655744.1 2531337 D 761193 CDS YP_004655745.1 338211692 10870732 complement(2534023..2536098) 1 NC_015703.1 PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: psn:Pedsa_2729 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; oligopeptidase B 2536098 10870732 Runsl_2201 Runella slithyformis DSM 19594 oligopeptidase B YP_004655745.1 2534023 R 761193 CDS YP_004655746.1 338211693 10870733 2536181..2536762 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); COGs: COG0663 Carbonic anhydrase/acetyltransferase isoleucine patch superfamily; InterPro IPR001451; KEGG: lby:Lbys_3230 carbonic anhydrase/acetyltransferase isoleucine patch superfamily-like protein; SPTR: Carbonic anhydrase/acetyltransferase isoleucine patch superfamily-like protein; hypothetical protein 2536762 10870733 Runsl_2202 Runella slithyformis DSM 19594 hypothetical protein YP_004655746.1 2536181 D 761193 CDS YP_004655747.1 338211694 10870734 complement(2536755..2537279) 1 NC_015703.1 COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_1837 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; isoleucine patch superfamily carbonic anhydrase/acetyltransferase 2537279 10870734 Runsl_2203 Runella slithyformis DSM 19594 isoleucine patch superfamily carbonic anhydrase/acetyltransferase YP_004655747.1 2536755 R 761193 CDS YP_004655748.1 338211695 10870735 2537440..2538489 1 NC_015703.1 PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_1836 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; signal transduction histidine kinase 2538489 10870735 Runsl_2204 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004655748.1 2537440 D 761193 CDS YP_004655749.1 338211696 10870736 2538504..2539274 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_3785 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: GDP-L-fucose synthase; SPTR: NAD-dependent epimerase/dehydratase; LytTR family two component transcriptional regulator 2539274 10870736 Runsl_2205 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004655749.1 2538504 D 761193 CDS YP_004655750.1 338211697 10870737 2539336..2540277 1 NC_015703.1 PFAM: NAD dependent epimerase/dehydratase; COGs: COG0761 Penicillin tolerance protein; InterPro IPR003451; KEGG: dfe:Dfer_3543 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein; PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SPTR: Hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: LytB protein; GDP-L-fucose synthase 2540277 10870737 Runsl_2206 Runella slithyformis DSM 19594 GDP-L-fucose synthase YP_004655750.1 2539336 D 761193 CDS YP_004655751.1 338211698 10870738 complement(2540407..2541633) 1 NC_015703.1 PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming); InterPro IPR004843; KEGG: dfe:Dfer_3294 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; hydroxymethylbutenyl pyrophosphate reductase 2541633 10870738 Runsl_2207 Runella slithyformis DSM 19594 hydroxymethylbutenyl pyrophosphate reductase YP_004655751.1 2540407 R 761193 CDS YP_004655752.1 338211699 10870739 complement(2541750..2542541) 1 NC_015703.1 PFAM: Calcineurin-like phosphoesterase; COGs: COG0169 Shikimate 5-dehydrogenase; InterPro IPR013708:IPR006151; KEGG: dfe:Dfer_4321 shikimate dehydrogenase substrate binding domain protein; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; SPTR: Shikimate dehydrogenase substrate binding domain protein; metallophosphoesterase 2542541 10870739 Runsl_2208 Runella slithyformis DSM 19594 metallophosphoesterase YP_004655752.1 2541750 R 761193 CDS YP_004655753.1 338211700 10870740 complement(2542620..2543378) 1 NC_015703.1 PFAM: Shikimate dehydrogenase substrate binding domain; TIGRFAM: shikimate 5-dehydrogenase; InterPro IPR005181:IPR000601; KEGG: dfe:Dfer_4090 protein of unknown function DUF303 acetylesterase PFAM: Protein of unknown function DUF303, acetylesterase ; PKD; SPTR: uncharacterized protein; shikimate dehydrogenase 2543378 10870740 Runsl_2209 Runella slithyformis DSM 19594 shikimate dehydrogenase YP_004655753.1 2542620 R 761193 CDS YP_004655754.1 338211701 10870741 complement(2543378..2547205) 1 NC_015703.1 PFAM: Domain of unknown function (DUF303); COGs: COG0536 GTPase; HAMAP: GTPase obg; InterPro IPR014100:IPR005225:IPR006169:IPR002917; KEGG: sli:Slin_5095 GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related; SPTR: GTPase obg; TIGRFAM: GTP-binding protein Obg/CgtA; Small GTP-binding protein; hypothetical protein 2547205 10870741 Runsl_2210 Runella slithyformis DSM 19594 hypothetical protein YP_004655754.1 2543378 R 761193 CDS YP_004655755.1 338211702 10870742 complement(2547331..2548323) 1 NC_015703.1 PFAM: GTPase of unknown function; GTP1/OBG; TIGRFAM: Obg family GTPase CgtA; small GTP-binding protein domain; COGs: COG0563 Adenylate kinase and related kinase; HAMAP: Adenylate kinase; InterPro IPR006259:IPR000850; KEGG: lby:Lbys_3218 adenylate kinase; PFAM: Adenylate kinase; SPTR: Adenylate kinase; TIGRFAM: Adenylate kinase, subfamily; GTPase ObgE 2548323 10870742 Runsl_2211 Runella slithyformis DSM 19594 GTPase ObgE YP_004655755.1 2547331 R 761193 CDS YP_004655756.1 338211703 10870743 complement(2548536..2549105) 1 NC_015703.1 PFAM: Adenylate kinase; TIGRFAM: adenylate kinases; KEGG: dfe:Dfer_4093 hypothetical protein; SPTR: uncharacterized protein; adenylate kinase 2549105 10870743 Runsl_2212 Runella slithyformis DSM 19594 adenylate kinase YP_004655756.1 2548536 R 761193 CDS YP_004655757.1 338211704 10870744 complement(2549326..2550195) 1 NC_015703.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: dfe:Dfer_4094 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase; hypothetical protein 2550195 10870744 Runsl_2213 Runella slithyformis DSM 19594 hypothetical protein YP_004655757.1 2549326 R 761193 CDS YP_004655758.1 338211705 10870745 2550357..2552147 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: sli:Slin_5387 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family; integral membrane sensor signal transduction histidine kinase 2552147 10870745 Runsl_2214 Runella slithyformis DSM 19594 integral membrane sensor signal transduction histidine kinase YP_004655758.1 2550357 D 761193 CDS YP_004655759.1 338211706 10870746 2552166..2552876 1 NC_015703.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; InterPro IPR006342; KEGG: bmj:BMULJ_04341 SAM-dependent methyltransferase; SPTR: Methyltransferase FkbM; TIGRFAM: Methyltransferase FkbM; winged helix family two component transcriptional regulator 2552876 10870746 Runsl_2215 Runella slithyformis DSM 19594 winged helix family two component transcriptional regulator YP_004655759.1 2552166 D 761193 CDS YP_004655760.1 338211707 10870747 complement(2552878..2553705) 1 NC_015703.1 PFAM: Met-10+ like-protein; TIGRFAM: methyltransferase, FkbM family; KEGG: sli:Slin_6059 hypothetical protein; SPTR: uncharacterized protein; FkbM family methyltransferase 2553705 10870747 Runsl_2216 Runella slithyformis DSM 19594 FkbM family methyltransferase YP_004655760.1 2552878 R 761193 CDS YP_004655761.1 338211708 10870748 complement(2553763..2555220) 1 NC_015703.1 InterPro IPR004155:IPR000357:IPR010496; KEGG: dfe:Dfer_2976 protein of unknown function DUF1080; PFAM: Protein of unknown function DUF1080; HEAT; PBS lyase HEAT-like repeat; SPTR: uncharacterized protein; hypothetical protein 2555220 10870748 Runsl_2217 Runella slithyformis DSM 19594 hypothetical protein YP_004655761.1 2553763 R 761193 CDS YP_004655762.1 338211709 10870749 complement(2555326..2558745) 1 NC_015703.1 PFAM: Domain of Unknown Function (DUF1080); HEAT repeat; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: dfe:Dfer_2975 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; hypothetical protein 2558745 10870749 Runsl_2218 Runella slithyformis DSM 19594 hypothetical protein YP_004655762.1 2555326 R 761193 CDS YP_004655763.1 338211710 10870750 complement(2558789..2560063) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013342; KEGG: dfe:Dfer_3890 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; SPTR: Mandelate racemase/muconate lactonizing protein; oxidoreductase domain-containing protein 2560063 10870750 Runsl_2219 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004655763.1 2558789 R 761193 CDS YP_004655764.1 338211711 10870751 complement(2560265..2561275) 1 NC_015703.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; KEGG: dfe:Dfer_3621 hypothetical protein; SPTR: uncharacterized protein; mandelate racemase 2561275 10870751 Runsl_2220 Runella slithyformis DSM 19594 mandelate racemase YP_004655764.1 2560265 R 761193 CDS YP_004655765.1 338211712 10870752 complement(2561343..2562035) 1 NC_015703.1 KEGG: dfe:Dfer_3620 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2562035 10870752 Runsl_2221 Runella slithyformis DSM 19594 hypothetical protein YP_004655765.1 2561343 R 761193 CDS YP_004655766.1 338211713 10870753 complement(2562062..2563039) 1 NC_015703.1 COGs: COG0061 sugar kinase; HAMAP: inorganic polyphosphate/ATP-NAD kinase; InterPro IPR002504; KEGG: sli:Slin_0658 ATP-NAD/AcoX kinase; PFAM: ATP-NAD/AcoX kinase; SPTR: Probable inorganic polyphosphate/ATP-NAD kinase; hypothetical protein 2563039 10870753 Runsl_2222 Runella slithyformis DSM 19594 hypothetical protein YP_004655766.1 2562062 R 761193 CDS YP_004655767.1 338211714 10870754 complement(2563125..2564000) 1 NC_015703.1 PFAM: ATP-NAD kinase; InterPro IPR000644; KEGG: dfe:Dfer_3892 CBS domain containing protein; PFAM: Cystathionine beta-synthase, core; SPTR: CBS domain containing protein; inorganic polyphosphate/ATP-NAD kinase 2564000 10870754 Runsl_2223 Runella slithyformis DSM 19594 inorganic polyphosphate/ATP-NAD kinase YP_004655767.1 2563125 R 761193 CDS YP_004655768.1 338211715 10870755 complement(2564062..2564730) 1 NC_015703.1 PFAM: CBS domain; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: dfe:Dfer_3868 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; hypothetical protein 2564730 10870755 Runsl_2224 Runella slithyformis DSM 19594 hypothetical protein YP_004655768.1 2564062 R 761193 CDS YP_004655769.1 338211716 10870756 complement(2564901..2566133) 1 NC_015703.1 PFAM: OmpA family; COGs: COG4974 Site-specific recombinase XerD; HAMAP: Tyrosine recombinase xerC; InterPro IPR004107:IPR002104; KEGG: sli:Slin_0098 integrase; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Tyrosine recombinase xerC 1; OmpA/MotB domain-containing protein 2566133 10870756 Runsl_2225 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004655769.1 2564901 R 761193 CDS YP_004655770.1 338211717 10870757 complement(2566306..2567181) 1 NC_015703.1 PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase; InterPro IPR010496; KEGG: sli:Slin_4651 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; tyrosine recombinase XerC 2567181 10870757 Runsl_2226 Runella slithyformis DSM 19594 tyrosine recombinase XerC YP_004655770.1 2566306 R 761193 CDS YP_004655771.1 338211718 10870758 complement(2567300..2568049) 1 NC_015703.1 PFAM: Domain of Unknown Function (DUF1080); COGs: COG2152 glycosylase; InterPro IPR007184; KEGG: sli:Slin_3919 glycosidase PH1107-related protein; PFAM: Glycosidase, PH1107-related; SPTR: Glycosidase PH1107-related protein; hypothetical protein 2568049 10870758 Runsl_2227 Runella slithyformis DSM 19594 hypothetical protein YP_004655771.1 2567300 R 761193 CDS YP_004655772.1 338211719 10870759 complement(2568046..2569161) 1 NC_015703.1 PFAM: Domain of unknown function (DUF377); COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: sli:Slin_5156 ROK family protein; PFAM: ROK; PRIAM: Glucokinase; SPTR: ROK family protein; glycosidase-like protein 2569161 10870759 Runsl_2228 Runella slithyformis DSM 19594 glycosidase-like protein YP_004655772.1 2568046 R 761193 CDS YP_004655773.1 338211720 10870760 complement(2569321..2570229) 1 NC_015703.1 PFAM: ROK family; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: dfe:Dfer_3961 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; glucokinase 2570229 10870760 Runsl_2229 Runella slithyformis DSM 19594 glucokinase YP_004655773.1 2569321 R 761193 CDS YP_004655774.1 338211721 10870761 complement(2570315..2571025) 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG0344 membrane protein; HAMAP: Protein of unknown function DUF205; InterPro IPR020788:IPR003811; KEGG: dfe:Dfer_3740 acyl-phosphate glycerol-3-phosphate acyltransferase; PFAM: Protein of unknown function DUF205; SPTR: Glycerol-3-phosphate acyltransferase; TIGRFAM: Membrane protein YgiH; short-chain dehydrogenase/reductase SDR 2571025 10870761 Runsl_2230 Runella slithyformis DSM 19594 short-chain dehydrogenase/reductase SDR YP_004655774.1 2570315 R 761193 CDS YP_004655775.1 338211722 10870762 2571157..2571798 1 NC_015703.1 PFAM: Domain of unknown function (DUF205); TIGRFAM: acyl-phosphate glycerol 3-phosphate acyltransferase; InterPro IPR002610; KEGG: dfe:Dfer_3557 rhomboid family protein; PFAM: Peptidase S54, rhomboid; SPTR: Rhomboid family protein; glycerol-3-phosphate acyltransferase 2571798 10870762 Runsl_2231 Runella slithyformis DSM 19594 glycerol-3-phosphate acyltransferase YP_004655775.1 2571157 D 761193 CDS YP_004655776.1 338211723 10870763 2571924..2572550 1 NC_015703.1 PFAM: Rhomboid family; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: dfe:Dfer_3397 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28; rhomboid family protein 2572550 10870763 Runsl_2232 Runella slithyformis DSM 19594 rhomboid family protein YP_004655776.1 2571924 D 761193 CDS YP_004655777.1 338211724 10870764 2572554..2574197 1 NC_015703.1 PFAM: PA domain; Peptidase M28; COGs: COG2030 Acyl dehydratase; InterPro IPR002539; KEGG: sli:Slin_5640 enoyl-CoA hydratase; PFAM: MaoC-like dehydratase; PRIAM: Enoyl-CoA hydratase; SPTR: Enoyl-CoA hydratase; peptidase M28 2574197 10870764 Runsl_2233 Runella slithyformis DSM 19594 peptidase M28 YP_004655777.1 2572554 D 761193 CDS YP_004655778.1 338211725 10870765 2574210..2574662 1 NC_015703.1 PFAM: MaoC like domain; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_0401 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; enoyl-CoA hydratase 2574662 10870765 Runsl_2234 Runella slithyformis DSM 19594 enoyl-CoA hydratase YP_004655778.1 2574210 D 761193 CDS YP_004655779.1 338211726 10870766 2574778..2575512 1 NC_015703.1 PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: sli:Slin_5641 butyryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Butyryl-CoA dehydrogenase; 3-oxoacyl-ACP reductase 2575512 10870766 Runsl_2235 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004655779.1 2574778 D 761193 CDS YP_004655780.1 338211727 10870767 2575589..2576758 1 NC_015703.1 PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; butyryl-CoA dehydrogenase 2576758 10870767 Runsl_2236 Runella slithyformis DSM 19594 butyryl-CoA dehydrogenase YP_004655780.1 2575589 D 761193 CDS YP_004655781.1 338211728 10870768 complement(2576800..2577153) 1 NC_015703.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: dfe:Dfer_3823 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; hypothetical protein 2577153 10870768 Runsl_2237 Runella slithyformis DSM 19594 hypothetical protein YP_004655781.1 2576800 R 761193 CDS YP_004655782.1 338211729 10870769 2577812..2578738 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: phe:Phep_0201 hypothetical protein; SPTR: Membrane or secreted protein; AraC family transcriptional regulator 2578738 10870769 Runsl_2238 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004655782.1 2577812 D 761193 CDS YP_004655783.1 338211730 10870770 2578877..2579575 1 NC_015703.1 COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase; InterPro IPR005863:IPR000713:IPR013221:IPR004101; KEGG: dfe:Dfer_4530 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a lanineligase; SPTR:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-al anineligase; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; hypothetical protein 2579575 10870770 Runsl_2239 Runella slithyformis DSM 19594 hypothetical protein YP_004655783.1 2578877 D 761193 CDS YP_004655784.1 338211731 10870771 2579632..2580924 1 NC_015703.1 PFAM: Mur ligase, glutamate ligase domain; Mur ligase, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; COGs: COG4289 conserved hypothetical protein; InterPro IPR016624; KEGG: bsa:Bacsa_1607 glycosyl hydrolase 88; PFAM: Uncharacterised conserved protein UCP014753; SPTR: uncharacterized protein; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase 2580924 10870771 Runsl_2240 Runella slithyformis DSM 19594 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase YP_004655784.1 2579632 D 761193 CDS YP_004655785.1 338211732 10870772 complement(2580935..2582200) 1 NC_015703.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2264); COGs: COG2706 3-carboxymuconate cyclase; InterPro IPR019405; KEGG: cpi:Cpin_0750 6-phosphogluconolactonase; PFAM: Domain of unknown function DUF2394; PRIAM: 6-phosphogluconolactonase; SPTR: 6-phosphogluconolactonase; hypothetical protein 2582200 10870772 Runsl_2241 Runella slithyformis DSM 19594 hypothetical protein YP_004655785.1 2580935 R 761193 CDS YP_004655786.1 338211733 10870773 complement(2582219..2583334) 1 NC_015703.1 PFAM: 3-carboxy-cis,cis-muconate lactonizing enzyme; InterPro IPR011644; KEGG: sli:Slin_6271 heme NO binding domain protein; PFAM: Haem NO binding; SPTR: Heme NO binding domain protein; 6-phosphogluconolactonase 2583334 10870773 Runsl_2242 Runella slithyformis DSM 19594 6-phosphogluconolactonase YP_004655786.1 2582219 R 761193 CDS YP_004655787.1 338211734 10870774 2583518..2584054 1 NC_015703.1 PFAM: Heme NO binding; COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 001789:IPR013655:IPR013767:IPR008207; KEGG: sli:Slin_6270 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-3; PAS fold; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif; Signal transduction response regulator, receiver region; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; heme NO binding domain-containing protein 2584054 10870774 Runsl_2243 Runella slithyformis DSM 19594 heme NO binding domain-containing protein YP_004655787.1 2583518 D 761193 CDS YP_004655788.1 338211735 10870775 2584056..2586917 1 NC_015703.1 PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG3717 5-keto 4-deoxyuronate isomerase; HAMAP: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; InterPro IPR007045; KEGG: dfe:Dfer_2839 5-keto-4-deoxyuronate isomerase; PFAM: 5-keto 4-deoxyuronate isomerase; PRIAM: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; SPTR: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; multi-sensor hybrid histidine kinase 2586917 10870775 Runsl_2244 Runella slithyformis DSM 19594 multi-sensor hybrid histidine kinase YP_004655788.1 2584056 D 761193 CDS YP_004655789.1 338211736 10870776 complement(2587004..2587834) 1 NC_015703.1 PFAM: KduI/IolB family; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: cpi:Cpin_6825 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 2-deoxy-D-gluconate 3-dehydrogenase; SPTR: Short-chain dehydrogenase/reductase SDR; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 2587834 10870776 Runsl_2245 Runella slithyformis DSM 19594 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase YP_004655789.1 2587004 R 761193 CDS YP_004655790.1 338211737 10870777 complement(2587876..2588637) 1 NC_015703.1 PFAM: short chain dehydrogenase; TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; 2-deoxy-D-gluconate 3-dehydrogenase 2588637 10870777 Runsl_2246 Runella slithyformis DSM 19594 2-deoxy-D-gluconate 3-dehydrogenase YP_004655790.1 2587876 R 761193 CDS YP_004655791.1 338211738 10870778 2588829..2588924 1 NC_015703.1 COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: dfe:Dfer_2837 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; hypothetical protein 2588924 10870778 Runsl_2247 Runella slithyformis DSM 19594 hypothetical protein YP_004655791.1 2588829 D 761193 CDS YP_004655792.1 338211739 10870779 2588933..2589964 1 NC_015703.1 PFAM: Bacterial regulatory proteins, lacI family; family; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: cpi:Cpin_1037 cell wall hydrolase/autolysin; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; SPTR: Cell wall hydrolase/autolysin; LacI family transcriptional regulator 2589964 10870779 Runsl_2248 Runella slithyformis DSM 19594 LacI family transcriptional regulator YP_004655792.1 2588933 D 761193 CDS YP_004655793.1 338211740 10870780 2589975..2591198 1 NC_015703.1 PFAM: N-acetylmuramoyl-L-alanine amidase; Localisation of periplasmic protein complexes; KEGG: lby:Lbys_3570 hypothetical protein; SPTR: uncharacterized protein; cell wall hydrolase/autolysin 2591198 10870780 Runsl_2249 Runella slithyformis DSM 19594 cell wall hydrolase/autolysin YP_004655793.1 2589975 D 761193 CDS YP_004655794.1 338211741 10870781 2591243..2591905 1 NC_015703.1 hypothetical protein 2591905 10870781 Runsl_2250 Runella slithyformis DSM 19594 hypothetical protein YP_004655794.1 2591243 D 761193 CDS YP_004655795.1 338211742 10870782 complement(2591966..2592205) 1 NC_015703.1 COGs: COG5434 Endopygalactorunase; InterPro IPR006626:IPR001087:IPR000743; KEGG: lby:Lbys_1641 glycoside hydrolase 28; PFAM: Glycoside hydrolase, family 28; Lipase, GDSL; PRIAM: Exo-poly-alpha-galacturonosidase; SPTR: Glycoside hydrolase 28; hypothetical protein 2592205 10870782 Runsl_2251 Runella slithyformis DSM 19594 hypothetical protein YP_004655795.1 2591966 R 761193 CDS YP_004655796.1 338211743 10870783 2592364..2594709 1 NC_015703.1 PFAM: Glycosyl hydrolases family 28; GDSL-like Lipase/Acylhydrolase; KEGG: sli:Slin_3865 hypothetical protein; SPTR: uncharacterized protein; Exo-poly-alpha-galacturonosidase 2594709 10870783 Runsl_2252 Runella slithyformis DSM 19594 Exo-poly-alpha-galacturonosidase YP_004655796.1 2592364 D 761193 CDS YP_004655797.1 338211744 10870784 complement(2595170..2597818) 1 NC_015703.1 InterPro IPR013517; KEGG: fjo:Fjoh_5055 hypothetical protein; PFAM: FG-GAP; SPTR: Hypothetical lipoprotein; hypothetical protein 2597818 10870784 Runsl_2253 Runella slithyformis DSM 19594 hypothetical protein YP_004655797.1 2595170 R 761193 CDS YP_004655798.1 338211745 10870785 complement(2597836..2598546) 1 NC_015703.1 PFAM: FG-GAP repeat; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: chu:CHU_1932 outer membrane protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: Possible outer membrane protein; hypothetical protein 2598546 10870785 Runsl_2254 Runella slithyformis DSM 19594 hypothetical protein YP_004655798.1 2597836 R 761193 CDS YP_004655799.1 338211746 10870786 complement(2598570..2600192) 1 NC_015703.1 PFAM: OmpA family; KEGG: dfe:Dfer_3562 hypothetical protein; SPTR: uncharacterized protein; OmpA/MotB domain-containing protein 2600192 10870786 Runsl_2255 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004655799.1 2598570 R 761193 CDS YP_004655800.1 338211747 10870787 complement(2600223..2600660) 1 NC_015703.1 KEGG: cat:CA2559_05520 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2600660 10870787 Runsl_2256 Runella slithyformis DSM 19594 hypothetical protein YP_004655800.1 2600223 R 761193 CDS YP_004655801.1 338211748 10870788 complement(2600679..2601713) 1 NC_015703.1 hypothetical protein 2601713 10870788 Runsl_2257 Runella slithyformis DSM 19594 hypothetical protein YP_004655801.1 2600679 R 761193 CDS YP_004655802.1 338211749 10870789 complement(2601721..2602761) 1 NC_015703.1 KEGG: ppn:Palpr_1196 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2602761 10870789 Runsl_2258 Runella slithyformis DSM 19594 hypothetical protein YP_004655802.1 2601721 R 761193 CDS YP_004655803.1 338211750 10870790 complement(2603050..2604144) 1 NC_015703.1 COGs: COG3920 Signal transduction histidine kinase; InterPro IPR011495:IPR003594; KEGG: gfo:GFO_2643 two-component system sensor histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor region; ATP-binding region, ATPase-like; SPTR: Signal transduction histidine kinase; hypothetical protein 2604144 10870790 Runsl_2259 Runella slithyformis DSM 19594 hypothetical protein YP_004655803.1 2603050 R 761193 CDS YP_004655804.1 338211751 10870791 2604304..2606088 1 NC_015703.1 PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789; KEGG: dfe:Dfer_1630 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; signal transduction histidine kinase 2606088 10870791 Runsl_2260 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004655804.1 2604304 D 761193 CDS YP_004655805.1 338211752 10870792 2606063..2606791 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090:IPR002655; KEGG: cao:Celal_2067 acyl-CoA oxidase; PFAM: Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase, C-terminal; PRIAM: Acyl-CoA oxidase; SPTR: Acyl-CoA oxidase; response regulator receiver protein 2606791 10870792 Runsl_2261 Runella slithyformis DSM 19594 response regulator receiver protein YP_004655805.1 2606063 D 761193 CDS YP_004655806.1 338211753 10870793 complement(2606907..2609189) 1 NC_015703.1 PFAM: Acyl-CoA oxidase; Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: sli:Slin_1486 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family; acyl-CoA oxidase 2609189 10870793 Runsl_2262 Runella slithyformis DSM 19594 acyl-CoA oxidase YP_004655806.1 2606907 R 761193 CDS YP_004655807.1 338211754 10870794 complement(2609298..2610023) 1 NC_015703.1 PFAM: GDSL-like Lipase/Acylhydrolase; InterPro IPR014968; KEGG: cyn:Cyan7425_3080 XisI protein; PFAM: XisI protein; SPTR: uncharacterized protein; G-D-S-L family lipolytic protein 2610023 10870794 Runsl_2263 Runella slithyformis DSM 19594 G-D-S-L family lipolytic protein YP_004655807.1 2609298 R 761193 CDS YP_004655808.1 338211755 10870795 complement(2610041..2610376) 1 NC_015703.1 PFAM: XisI protein; InterPro IPR014919; KEGG: mar:MAE_16020 FdxN element excision controlling factor protein; PFAM: XisH protein; SPTR: FdxN element excision controlling factor protein; XisI protein 2610376 10870795 Runsl_2264 Runella slithyformis DSM 19594 XisI protein YP_004655808.1 2610041 R 761193 CDS YP_004655809.1 338211756 10870796 complement(2610364..2610777) 1 NC_015703.1 PFAM: XisH protein; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_2514 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; manually curated; XisH protein 2610777 10870796 Runsl_2265 Runella slithyformis DSM 19594 XisH protein YP_004655809.1 2610364 R 761193 CDS YP_004655810.1 338211757 10870797 complement(2610857..2613313) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; KEGG: cao:Celal_2018 hypothetical protein; SPTR: Cytochrome c; TonB-dependent receptor 2613313 10870797 Runsl_2266 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004655810.1 2610857 R 761193 CDS YP_004655811.1 338211758 10870798 complement(2613417..2613929) 1 NC_015703.1 COGs: COG5520 O-Glycosyl hydrolase; InterPro IPR001139; KEGG: psn:Pedsa_3076 glucan endo-1,6-beta-glucosidase; PFAM: Glycoside hydrolase, family 30; PRIAM: Glucan endo-1,6-beta-glucosidase; SPTR: Glucan endo-1,6-beta-glucosidase; hypothetical protein 2613929 10870798 Runsl_2267 Runella slithyformis DSM 19594 hypothetical protein YP_004655811.1 2613417 R 761193 CDS YP_004655812.1 338211759 10870799 2614290..2615669 1 NC_015703.1 PFAM: O-Glycosyl hydrolase 30; KEGG: asa:ASA_0853 hypothetical protein; SPTR: uncharacterized protein; glucan endo-1,6-beta-glucosidase 2615669 10870799 Runsl_2268 Runella slithyformis DSM 19594 glucan endo-1,6-beta-glucosidase YP_004655812.1 2614290 D 761193 CDS YP_004655813.1 338211760 10870800 complement(2615692..2616168) 1 NC_015703.1 COGs: COG3538 conserved hypothetical protein; InterPro IPR006311:IPR008313; KEGG: dfe:Dfer_4291 hypothetical protein; PFAM: Uncharacterised conserved protein UCP028846; SPTR: uncharacterized protein; hypothetical protein 2616168 10870800 Runsl_2269 Runella slithyformis DSM 19594 hypothetical protein YP_004655813.1 2615692 R 761193 CDS YP_004655814.1 338211761 10870801 2616460..2617881 1 NC_015703.1 PFAM: Protein of unknown function (DUF1237); COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933; KEGG: sli:Slin_1127 alpha-L-fucosidase; PFAM: Glycoside hydrolase, family 29; SMART: Glycoside hydrolase, family 29; SPTR: Alpha-L-fucosidase; hypothetical protein 2617881 10870801 Runsl_2270 Runella slithyformis DSM 19594 hypothetical protein YP_004655814.1 2616460 D 761193 CDS YP_004655815.1 338211762 10870802 2617997..2619436 1 NC_015703.1 PFAM: Alpha-L-fucosidase; COGs: COG1446 Asparaginase; InterPro IPR000246; KEGG: lby:Lbys_1666 asparaginase; PFAM: Peptidase T2, asparaginase 2; PRIAM:N(4)-(beta-N-acetylglucosaminyl)-L-asparagina se; SPTR: Asparaginase; glycoside hydrolase 2619436 10870802 Runsl_2271 Runella slithyformis DSM 19594 glycoside hydrolase YP_004655815.1 2617997 D 761193 CDS YP_004655816.1 338211763 10870803 2619518..2620564 1 NC_015703.1 PFAM: Asparaginase; COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933; KEGG: lby:Lbys_1665 glycoside hydrolase 29 (alpha-L-fucosidase); PFAM: Glycoside hydrolase, family 29; SMART: Glycoside hydrolase, family 29; SPTR: Glycoside hydrolase 29 (Alpha-L-fucosidase); N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase 2620564 10870803 Runsl_2272 Runella slithyformis DSM 19594 N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase YP_004655816.1 2619518 D 761193 CDS YP_004655817.1 338211764 10870804 2620633..2622000 1 NC_015703.1 PFAM: Alpha-L-fucosidase; COGs: COG1858 Cytochrome c peroxidase; InterPro IPR004852; KEGG: hoh:Hoch_3035 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; SPTR: Probable Cytochrome-c peroxidase; glycoside hydrolase 2622000 10870804 Runsl_2273 Runella slithyformis DSM 19594 glycoside hydrolase YP_004655817.1 2620633 D 761193 CDS YP_004655818.1 338211765 10870805 complement(2622053..2623225) 1 NC_015703.1 PFAM: Cytochrome c; Di-haem cytochrome c peroxidase; KEGG: sli:Slin_6343 hypothetical protein; SPTR: uncharacterized protein; Di-heme cytochrome c peroxidase 2623225 10870805 Runsl_2274 Runella slithyformis DSM 19594 Di-heme cytochrome c peroxidase YP_004655818.1 2622053 R 761193 CDS YP_004655819.1 338211766 10870806 2623398..2625542 1 NC_015703.1 InterPro IPR001087; KEGG: sli:Slin_3977 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family; hypothetical protein 2625542 10870806 Runsl_2275 Runella slithyformis DSM 19594 hypothetical protein YP_004655819.1 2623398 D 761193 CDS YP_004655820.1 338211767 10870807 2625618..2627387 1 NC_015703.1 PFAM: GDSL-like Lipase/Acylhydrolase; COGs: COG3325 Chitinase; InterPro IPR011583:IPR001223; KEGG: lby:Lbys_2911 glycoside hydrolase 18; PFAM: Glycoside hydrolase, family 18, catalytic domain; SMART: Chitinase II; SPTR: Glycoside hydrolase 18; G-D-S-L family lipolytic protein 2627387 10870807 Runsl_2276 Runella slithyformis DSM 19594 G-D-S-L family lipolytic protein YP_004655820.1 2625618 D 761193 CDS YP_004655821.1 338211768 10870808 2627411..2628373 1 NC_015703.1 PFAM: Glycosyl hydrolases family 18; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: dfe:Dfer_2787 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; glycoside hydrolase 2628373 10870808 Runsl_2277 Runella slithyformis DSM 19594 glycoside hydrolase YP_004655821.1 2627411 D 761193 CDS YP_004655822.1 338211769 10870809 2628969..2631185 1 NC_015703.1 COGs: COG0679 permease; InterPro IPR004776; KEGG: bmd:BMD_1912 auxin efflux carrier (AEC) family transporter; PFAM: Auxin efflux carrier; SPTR: Transporter, auxin efflux carrier (AEC) family protein; radical SAM protein 2631185 10870809 Runsl_2278 Runella slithyformis DSM 19594 radical SAM protein YP_004655822.1 2628969 D 761193 CDS YP_004655823.1 338211770 10870810 complement(2631270..2632190) 1 NC_015703.1 PFAM: Membrane transport protein; InterPro IPR013096; KEGG: cpi:Cpin_7186 cupin; PFAM: Cupin 2, conserved barrel; SPTR: Cupin 2 conserved barrel domain protein; auxin efflux carrier family protein 2632190 10870810 Runsl_2279 Runella slithyformis DSM 19594 auxin efflux carrier family protein YP_004655823.1 2631270 R 761193 CDS YP_004655824.1 338211771 10870811 2632531..2632872 1 NC_015703.1 PFAM: Cupin domain; COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: dfe:Dfer_2841 glycosyl hydrolase 88; PFAM: Glycosyl hydrolase, family 88; SPTR: Glycosyl hydrolase 88; cupin 2632872 10870811 Runsl_2280 Runella slithyformis DSM 19594 cupin YP_004655824.1 2632531 D 761193 CDS YP_004655825.1 338211772 10870812 2632902..2634812 1 NC_015703.1 PFAM: Glycosyl Hydrolase 88; COGs: COG0246 Mannitol-1-phosphate/altronate dehydrogenase; InterPro IPR013131:IPR013118; KEGG: sli:Slin_1247 mannitol dehydrogenase domain protein; PFAM: Mannitol dehydrogenase, C-terminal; Mannitol dehydrogenase, N-terminal; PRIAM: Tagaturonate reductase; SPTR: Mannitol dehydrogenase domain protein; glycoside hydrolase 2634812 10870812 Runsl_2281 Runella slithyformis DSM 19594 glycoside hydrolase YP_004655825.1 2632902 D 761193 CDS YP_004655826.1 338211773 10870813 2635053..2636600 1 NC_015703.1 PFAM: Mannitol dehydrogenase C-terminal domain; Mannitol dehydrogenase Rossmann domain; COGs: COG1904 Glucuronate isomerase; HAMAP: Uronate isomerase; InterPro IPR003766; KEGG: lby:Lbys_1618 D-glucuronate isomerase; PFAM: Uronate isomerase; PRIAM: Glucuronate isomerase; SPTR: Uronate isomerase; Tagaturonate reductase 2636600 10870813 Runsl_2282 Runella slithyformis DSM 19594 Tagaturonate reductase YP_004655826.1 2635053 D 761193 CDS YP_004655827.1 338211774 10870814 2636622..2638046 1 NC_015703.1 PFAM: Glucuronate isomerase; COGs: COG0524 Sugar kinase ribokinase; InterPro IPR011611; KEGG: sli:Slin_1246 PfkB domain protein; PFAM: Carbohydrate/purine kinase; SPTR: PfkB domain protein; uronate isomerase 2638046 10870814 Runsl_2283 Runella slithyformis DSM 19594 uronate isomerase YP_004655827.1 2636622 D 761193 CDS YP_004655828.1 338211775 10870815 2638100..2639137 1 NC_015703.1 PFAM: pfkB family carbohydrate kinase; COGs: COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; InterPro IPR000887; KEGG: sli:Slin_1245 KDPG and KHG aldolase; PFAM: KDPG/KHG aldolase; SPTR: KDPG and KHG aldolase; TIGRFAM: KDPG/KHG aldolase; PfkB domain-containing protein 2639137 10870815 Runsl_2284 Runella slithyformis DSM 19594 PfkB domain-containing protein YP_004655828.1 2638100 D 761193 CDS YP_004655829.1 338211776 10870816 2639157..2639828 1 NC_015703.1 PFAM: KDPG and KHG aldolase; TIGRFAM: Entner-Doudoroff aldolase; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: phe:Phep_1023 major facilitator superfamily protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; 2-dehydro-3-deoxyphosphogluconate aldolase 2639828 10870816 Runsl_2285 Runella slithyformis DSM 19594 2-dehydro-3-deoxyphosphogluconate aldolase YP_004655829.1 2639157 D 761193 CDS YP_004655830.1 338211777 10870817 2639900..2641201 1 NC_015703.1 PFAM: Major Facilitator Superfamily; KEGG: sli:Slin_0455 hypothetical protein; SPTR: uncharacterized protein; major facilitator superfamily protein 2641201 10870817 Runsl_2286 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004655830.1 2639900 D 761193 CDS YP_004655831.1 338211778 10870818 2641210..2641641 1 NC_015703.1 PFAM: Calcium/calmodulin dependent protein kinase II Association; COGs: COG0126 3-phosphoglycerate kinase; HAMAP: Phosphoglycerate kinase; InterPro IPR001576; KEGG: lby:Lbys_3021 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; PRIAM: Phosphoglycerate kinase; SPTR: Phosphoglycerate kinase; hypothetical protein 2641641 10870818 Runsl_2287 Runella slithyformis DSM 19594 hypothetical protein YP_004655831.1 2641210 D 761193 CDS YP_004655832.1 338211779 10870819 2641839..2643026 1 NC_015703.1 PFAM: Phosphoglycerate kinase; KEGG: dfe:Dfer_3393 hypothetical protein; SPTR: uncharacterized protein; phosphoglycerate kinase 2643026 10870819 Runsl_2288 Runella slithyformis DSM 19594 phosphoglycerate kinase YP_004655832.1 2641839 D 761193 CDS YP_004655833.1 338211780 10870820 complement(2643096..2643677) 1 NC_015703.1 COGs: COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); HAMAP: NAD(P)H-quinone oxidoreductase subunit 2; InterPro IPR001750; KEGG: dfe:Dfer_3394 proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit N 1; hypothetical protein 2643677 10870820 Runsl_2289 Runella slithyformis DSM 19594 hypothetical protein YP_004655833.1 2643096 R 761193 CDS YP_004655834.1 338211781 10870821 2643780..2645234 1 NC_015703.1 PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; COGs: COG3158 K+ transporter; HAMAP: Low affinity potassium transport system protein kup; InterPro IPR003855; KEGG: dfe:Dfer_3443 K potassium transporter; PFAM: K+ potassium transporter; SPTR: Probable potassium transport system protein kup 1; NAD(P)H-quinone oxidoreductase subunit 2 2645234 10870821 Runsl_2290 Runella slithyformis DSM 19594 NAD(P)H-quinone oxidoreductase subunit 2 YP_004655834.1 2643780 D 761193 CDS YP_004655835.1 338211782 10870822 2645475..2647424 1 NC_015703.1 PFAM: K+ potassium transporter; COGs: COG3158 K+ transporter; HAMAP: Low affinity potassium transport system protein kup; InterPro IPR003855; KEGG: sli:Slin_2974 K potassium transporter; PFAM: K+ potassium transporter; SPTR: Probable potassium transport system protein kup 2; Low affinity potassium transport system protein kup 2647424 10870822 Runsl_2291 Runella slithyformis DSM 19594 Low affinity potassium transport system protein kup YP_004655835.1 2645475 D 761193 CDS YP_004655836.1 338211783 10870823 2647440..2649395 1 NC_015703.1 PFAM: K+ potassium transporter; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_4399 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: CDP-paratose 2-epimerase; SPTR: NAD-dependent epimerase/dehydratase; Low affinity potassium transport system protein kup 2649395 10870823 Runsl_2292 Runella slithyformis DSM 19594 Low affinity potassium transport system protein kup YP_004655836.1 2647440 D 761193 CDS YP_004655837.1 338211784 10870824 2649404..2650465 1 NC_015703.1 PFAM: NAD dependent epimerase/dehydratase; COGs: COG3717 5-keto 4-deoxyuronate isomerase; HAMAP: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; InterPro IPR007045; KEGG: bse:Bsel_0460 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; PFAM: 5-keto 4-deoxyuronate isomerase; PRIAM: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; SPTR: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; CDP-paratose 2-epimerase 2650465 10870824 Runsl_2293 Runella slithyformis DSM 19594 CDP-paratose 2-epimerase YP_004655837.1 2649404 D 761193 CDS YP_004655838.1 338211785 10870825 2650533..2651369 1 NC_015703.1 PFAM: KduI/IolB family; InterPro IPR003489; KEGG: dfe:Dfer_3255 sigma 54 modulation protein/ribosomal protein S30EA; SPTR: sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 2651369 10870825 Runsl_2294 Runella slithyformis DSM 19594 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase YP_004655838.1 2650533 D 761193 CDS YP_004655839.1 338211786 10870826 2651557..2651934 1 NC_015703.1 PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein; COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: sli:Slin_5309 amidohydrolase; PFAM: Amidohydrolase 1; SPTR: Amidohydrolase; ribosomal subunit interface protein 2651934 10870826 Runsl_2295 Runella slithyformis DSM 19594 ribosomal subunit interface protein YP_004655839.1 2651557 D 761193 CDS YP_004655840.1 338211787 10870827 2652069..2653688 1 NC_015703.1 PFAM: Amidohydrolase; COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain; InterPro IPR004529:IPR004188:IPR002319; KEGG: dfe:Dfer_4769 phenylalanyl-tRNA synthetase, alpha subunit; PFAM: Phenylalanyl-tRNA synthetase alpha chain; Phenylalanyl-tRNA synthetase, class II, N-terminal; SPTR: Phenylalanyl-tRNA synthetase alpha chain; TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; amidohydrolase 2653688 10870827 Runsl_2296 Runella slithyformis DSM 19594 amidohydrolase YP_004655840.1 2652069 D 761193 CDS YP_004655841.1 338211788 10870828 2654006..2655046 1 NC_015703.1 PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; KEGG: dfe:Dfer_4561 hypothetical protein; SPTR: uncharacterized protein; phenylalanyl-tRNA synthetase subunit alpha 2655046 10870828 Runsl_2297 Runella slithyformis DSM 19594 phenylalanyl-tRNA synthetase subunit alpha YP_004655841.1 2654006 D 761193 CDS YP_004655842.1 338211789 10870829 complement(2655241..2655957) 1 NC_015703.1 COGs: COG0404 Glycine cleavage system T protein (aminomethyltransferase); HAMAP: Aminomethyltransferase; InterPro IPR006223:IPR006222:IPR013977; KEGG: dfe:Dfer_4550 glycine cleavage system aminomethyltransferase T; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel; PRIAM: Aminomethyltransferase; SPTR: Aminomethyltransferase; TIGRFAM: Glycine cleavage system T protein; hypothetical protein 2655957 10870829 Runsl_2298 Runella slithyformis DSM 19594 hypothetical protein YP_004655842.1 2655241 R 761193 CDS YP_004655843.1 338211790 10870830 2656122..2657222 1 NC_015703.1 PFAM: Aminomethyltransferase folate-binding domain; Glycine cleavage T-protein C-terminal barrel domain; TIGRFAM: glycine cleavage system T protein; COGs: COG2045 Phosphosulfolactate phosphohydrolase; InterPro IPR005238; KEGG: dfe:Dfer_4549 2-phosphosulfolactate phosphatase; PFAM: 2-phosphosulpholactate phosphatase; SPTR: Probable 2-phosphosulfolactate phosphatase; glycine cleavage system protein T 2657222 10870830 Runsl_2299 Runella slithyformis DSM 19594 glycine cleavage system protein T YP_004655843.1 2656122 D 761193 CDS YP_004655844.1 338211791 10870831 2657333..2658040 1 NC_015703.1 PFAM: 2-phosphosulpholactate phosphatase; COGs: COG0107 Imidazoleglycerol-phosphate synthase; HAMAP: Imidazole glycerol phosphate synthase subunit hisF; InterPro IPR004651:IPR006062; KEGG: dfe:Dfer_4239 imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: Histidine biosynthesis; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR: Imidazole glycerol phosphate synthase subunit hisF; TIGRFAM: Histidine biosynthesis, HisF; 2-phosphosulfolactate phosphatase 2658040 10870831 Runsl_2300 Runella slithyformis DSM 19594 2-phosphosulfolactate phosphatase YP_004655844.1 2657333 D 761193 CDS YP_004655845.1 338211792 10870832 2658077..2658907 1 NC_015703.1 PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: psn:Pedsa_2901 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; imidazole glycerol phosphate synthase subunit HisF 2658907 10870832 Runsl_2301 Runella slithyformis DSM 19594 imidazole glycerol phosphate synthase subunit HisF YP_004655845.1 2658077 D 761193 CDS YP_004655846.1 338211793 10870833 complement(2658904..2659629) 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: phe:Phep_0216 histidine kinase internal subunit; PFAM: Signal transduction histidine kinase, internal region; SPTR: transmembrane protein; LytTR family two component transcriptional regulator 2659629 10870833 Runsl_2302 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004655846.1 2658904 R 761193 CDS YP_004655847.1 338211794 10870834 complement(2659626..2660756) 1 NC_015703.1 PFAM: Histidine kinase; COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: sli:Slin_0366 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YceI family protein; signal transduction histidine kinase 2660756 10870834 Runsl_2303 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004655847.1 2659626 R 761193 CDS YP_004655848.1 338211795 10870835 2660959..2661525 1 NC_015703.1 PFAM: YceI-like domain; KEGG: dfe:Dfer_4741 beta-lactamase domain protein; SPTR: Beta-lactamase domain protein; hypothetical protein 2661525 10870835 Runsl_2304 Runella slithyformis DSM 19594 hypothetical protein YP_004655848.1 2660959 D 761193 CDS YP_004655849.1 338211796 10870836 complement(2661585..2662430) 1 NC_015703.1 PFAM: Metallo-beta-lactamase superfamily; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: syn:sll0740 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: Sll0740 protein; beta-lactamase domain-containing protein 2662430 10870836 Runsl_2305 Runella slithyformis DSM 19594 beta-lactamase domain-containing protein YP_004655849.1 2661585 R 761193 CDS YP_004655850.1 338211797 10870837 2662526..2663128 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: lby:Lbys_1108 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family; hypothetical protein 2663128 10870837 Runsl_2306 Runella slithyformis DSM 19594 hypothetical protein YP_004655850.1 2662526 D 761193 CDS YP_004655851.1 338211798 10870838 2663128..2663829 1 NC_015703.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0339 Zn-dependent oligopeptidase; InterPro IPR001567; KEGG: sli:Slin_1858 oligopeptidase A; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; PRIAM: Peptidyl-dipeptidase Dcp; SPTR: Oligopeptidase A; winged helix family two component transcriptional regulator 2663829 10870838 Runsl_2307 Runella slithyformis DSM 19594 winged helix family two component transcriptional regulator YP_004655851.1 2663128 D 761193 CDS YP_004655852.1 338211799 10870839 2663930..2666038 1 NC_015703.1 PFAM: Peptidase M3; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: cyn:Cyan7425_3410 type 11 methyltransferase; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; peptidyl-dipeptidase Dcp 2666038 10870839 Runsl_2308 Runella slithyformis DSM 19594 peptidyl-dipeptidase Dcp YP_004655852.1 2663930 D 761193 CDS YP_004655853.1 338211800 10870840 complement(2666103..2666849) 1 NC_015703.1 PFAM: Methyltransferase domain; Prodigal; manually curated; type 11 methyltransferase 2666849 10870840 Runsl_2309 Runella slithyformis DSM 19594 type 11 methyltransferase YP_004655853.1 2666103 R 761193 CDS YP_004655854.1 338211801 10870842 2667496..2667720 1 NC_015703.1 hypothetical protein 2667720 10870842 Runsl_2311 Runella slithyformis DSM 19594 hypothetical protein YP_004655854.1 2667496 D 761193 CDS YP_004655855.1 338211802 10870843 complement(2667740..2668213) 1 NC_015703.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: pdi:BDI_2642 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: Sigma-70 region 2 subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein 2668213 10870843 Runsl_2312 Runella slithyformis DSM 19594 hypothetical protein YP_004655855.1 2667740 R 761193 CDS YP_004655856.1 338211803 10870844 complement(2668220..2668786) 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: lby:Lbys_2521 membrane protein; SPTR: uncharacterized protein; ECF subfamily RNA polymerase sigma-24 subunit 2668786 10870844 Runsl_2313 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004655856.1 2668220 R 761193 CDS YP_004655857.1 338211804 10870845 2668933..2669277 1 NC_015703.1 COGs: COG0366 Glycosidase; InterPro IPR006589:IPR006047; KEGG: sli:Slin_4658 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; SPTR: Alpha amylase catalytic region; hypothetical protein 2669277 10870845 Runsl_2314 Runella slithyformis DSM 19594 hypothetical protein YP_004655857.1 2668933 D 761193 CDS YP_004655858.1 338211805 10870846 complement(2669328..2671286) 1 NC_015703.1 PFAM: Alpha amylase, catalytic domain; Domain of unknown function (DUF3416); InterPro IPR001387; KEGG: sli:Slin_1142 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; alpha amylase 2671286 10870846 Runsl_2315 Runella slithyformis DSM 19594 alpha amylase YP_004655858.1 2669328 R 761193 CDS YP_004655859.1 338211806 10870847 complement(2671373..2671744) 1 NC_015703.1 PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein 2671744 10870847 Runsl_2316 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004655859.1 2671373 R 761193 CDS YP_004655860.1 338211807 10870848 complement(2671816..2672049) 1 NC_015703.1 COGs: COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); HAMAP: NAD(P)H-quinone oxidoreductase subunit 2; InterPro IPR010096:IPR001750; KEGG: sli:Slin_5946 proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit N 1; TIGRFAM: NADH-quinone oxidoreductase, chain N; hypothetical protein 2672049 10870848 Runsl_2317 Runella slithyformis DSM 19594 hypothetical protein YP_004655860.1 2671816 R 761193 CDS YP_004655861.1 338211808 10870849 complement(2672182..2673576) 1 NC_015703.1 PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); InterPro IPR010227:IPR001750; KEGG: dfe:Dfer_3897 proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: Proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: NADH-quinone oxidoreductase, chain M; NAD(P)H-quinone oxidoreductase subunit 2 2673576 10870849 Runsl_2318 Runella slithyformis DSM 19594 NAD(P)H-quinone oxidoreductase subunit 2 YP_004655861.1 2672182 R 761193 CDS YP_004655862.1 338211809 10870850 complement(2673681..2675135) 1 NC_015703.1 PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR003945:IPR001516:IPR001750; KEGG: dfe:Dfer_3898 proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; PRIAM: NADH dehydrogenase (quinone); SPTR: Proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; proton-translocating NADH-quinone oxidoreductase subunit M 2675135 10870850 Runsl_2319 Runella slithyformis DSM 19594 proton-translocating NADH-quinone oxidoreductase subunit M YP_004655862.1 2673681 R 761193 CDS YP_004655863.1 338211810 10870851 complement(2675150..2677060) 1 NC_015703.1 PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5 C-terminus; NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; COGs: COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); HAMAP: NAD(P)H-quinone oxidoreductase subunit 4L; InterPro IPR001133; KEGG: dfe:Dfer_3899 NADH-ubiquinone oxidoreductase chain 4L; PFAM: NADH:ubiquinone/quinone oxidoreductase, chain 4L; SPTR: NADH-quinone oxidoreductase subunit K 1; proton-translocating NADH-quinone oxidoreductase subunit L 2677060 10870851 Runsl_2320 Runella slithyformis DSM 19594 proton-translocating NADH-quinone oxidoreductase subunit L YP_004655863.1 2675150 R 761193 CDS YP_004655864.1 338211811 10870852 complement(2677126..2677470) 1 NC_015703.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; COGs: COG0728 membrane protein virulence factor; InterPro IPR004268; KEGG: fnu:FN0709 virulence factor MviN; PFAM: Flagellin assembly, membrane protein MviN; SPTR: Virulence factor mviN; NAD(P)H-quinone oxidoreductase subunit 4L 2677470 10870852 Runsl_2321 Runella slithyformis DSM 19594 NAD(P)H-quinone oxidoreductase subunit 4L YP_004655864.1 2677126 R 761193 CDS YP_004655865.1 338211812 10870853 complement(2677791..2679332) 1 NC_015703.1 PFAM: MviN-like protein; KEGG: dfe:Dfer_5102 hypothetical protein; SPTR: uncharacterized protein; virulence factor MVIN family protein 2679332 10870853 Runsl_2322 Runella slithyformis DSM 19594 virulence factor MVIN family protein YP_004655865.1 2677791 R 761193 CDS YP_004655866.1 338211813 10870854 complement(2679356..2681020) 1 NC_015703.1 hypothetical protein 2681020 10870854 Runsl_2323 Runella slithyformis DSM 19594 hypothetical protein YP_004655866.1 2679356 R 761193 CDS YP_004655867.1 338211814 10870855 complement(2681021..2681992) 1 NC_015703.1 COGs: COG1778 Low specificity phosphatase (HAD superfamily); InterPro IPR010023:IPR006549:IPR005834; KEGG: ppn:Palpr_1685 2-dehydrO-3-deoxyphosphooctonate aldolase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: Phosphatase KdsC; HAD-superfamily hydrolase, subfamily IIIA; hypothetical protein 2681992 10870855 Runsl_2324 Runella slithyformis DSM 19594 hypothetical protein YP_004655867.1 2681021 R 761193 CDS YP_004655868.1 338211815 10870856 complement(2681979..2682476) 1 NC_015703.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; HAD-superfamily hydrolase, subfamily IIIA; KEGG: dfe:Dfer_5102 hypothetical protein; SPTR: uncharacterized protein; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 2682476 10870856 Runsl_2325 Runella slithyformis DSM 19594 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_004655868.1 2681979 R 761193 CDS YP_004655869.1 338211816 10870857 complement(2682508..2684172) 1 NC_015703.1 COGs: COG1083 CMP-N-acetylneuraminic acid synthetase; InterPro IPR003329; KEGG: atm:ANT_06460 N-acylneuraminate cytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase; PRIAM: N-acylneuraminate cytidylyltransferase; SPTR: N-acylneuraminate cytidylyltransferase; hypothetical protein 2684172 10870857 Runsl_2326 Runella slithyformis DSM 19594 hypothetical protein YP_004655869.1 2682508 R 761193 CDS YP_004655870.1 338211817 10870858 complement(2684186..2684938) 1 NC_015703.1 PFAM: Cytidylyltransferase; COGs: COG2089 Sialic acid synthase; InterPro IPR013132; KEGG: cat:CA2559_07305 N-acetylneuraminic acid phosphate synthase; PFAM: N-acetylneuraminic acid synthase, N-terminal; PRIAM: N-acetylneuraminate synthase; SPTR: N-acetylneuraminic acid phosphate synthase; N-acylneuraminate cytidylyltransferase 2684938 10870858 Runsl_2327 Runella slithyformis DSM 19594 N-acylneuraminate cytidylyltransferase YP_004655870.1 2684186 R 761193 CDS YP_004655871.1 338211818 10870859 complement(2684959..2685852) 1 NC_015703.1 PFAM: NeuB family; COGs: COG0276 Protoheme ferro-lyase (ferrochelatase); HAMAP: Ferrochelatase; InterPro IPR001015; KEGG: sli:Slin_0649 ferrochelatase; PFAM: Ferrochelatase; PRIAM: Ferrochelatase; SPTR: Ferrochelatase; TIGRFAM: Ferrochelatase; N-acetylneuraminate synthase 2685852 10870859 Runsl_2328 Runella slithyformis DSM 19594 N-acetylneuraminate synthase YP_004655871.1 2684959 R 761193 CDS YP_004655872.1 338211819 10870860 2686196..2687257 1 NC_015703.1 PFAM: Ferrochelatase; TIGRFAM: ferrochelatase; COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); HAMAP: Glutamyl-tRNA(Gln) amidotransferase, B subunit; InterPro IPR004413:IPR006075:IPR006107:IPR018027; KEGG: dfe:Dfer_3611 aspartyl/glutamyl-tRNA amidotransferase subunit B; PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, central region; Asn/Gln amidotransferase; SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit; ferrochelatase 2687257 10870860 Runsl_2329 Runella slithyformis DSM 19594 ferrochelatase YP_004655872.1 2686196 D 761193 CDS YP_004655873.1 338211820 10870861 complement(2687347..2688834) 1 NC_015703.1 PFAM: GatB/GatE catalytic domain; GatB domain; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit; aspartyl/glutamyl-tRNA amidotransferase subunit B 2688834 10870861 Runsl_2330 Runella slithyformis DSM 19594 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_004655873.1 2687347 R 761193 CDS YP_004655874.1 338211821 10870862 complement(2688932..2689087) 1 NC_015703.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: sli:Slin_5112 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase domain protein; hypothetical protein 2689087 10870862 Runsl_2331 Runella slithyformis DSM 19594 hypothetical protein YP_004655874.1 2688932 R 761193 CDS YP_004655875.1 338211822 10870863 2689213..2691024 1 NC_015703.1 PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; KEGG: sli:Slin_4550 TonB-dependent receptor plug; SPTR: TonB-dependent receptor plug; butyryl-CoA dehydrogenase 2691024 10870863 Runsl_2332 Runella slithyformis DSM 19594 butyryl-CoA dehydrogenase YP_004655875.1 2689213 D 761193 CDS YP_004655876.1 338211823 10870864 complement(2691055..2692659) 1 NC_015703.1 COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; InterPro IPR004607:IPR002376; KEGG: sli:Slin_4818 phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal; PRIAM: Phosphoribosylglycinamide formyltransferase; SPTR: Phosphoribosylglycinamide formyltransferase; TIGRFAM: Phosphoribosylglycinamide formyltransferase; hypothetical protein 2692659 10870864 Runsl_2333 Runella slithyformis DSM 19594 hypothetical protein YP_004655876.1 2691055 R 761193 CDS YP_004655877.1 338211824 10870865 complement(2692708..2693289) 1 NC_015703.1 PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; KEGG: sli:Slin_5553 hypothetical protein; SPTR: uncharacterized protein; phosphoribosylglycinamide formyltransferase 2693289 10870865 Runsl_2334 Runella slithyformis DSM 19594 phosphoribosylglycinamide formyltransferase YP_004655877.1 2692708 R 761193 CDS YP_004655878.1 338211825 10870866 2693463..2694647 1 NC_015703.1 hypothetical protein 2694647 10870866 Runsl_2335 Runella slithyformis DSM 19594 hypothetical protein YP_004655878.1 2693463 D 761193 CDS YP_004655879.1 338211826 10870867 complement(2694649..2694855) 1 NC_015703.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR000073; KEGG: mma:MM_3198 hypothetical protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: uncharacterized protein; hypothetical protein 2694855 10870867 Runsl_2336 Runella slithyformis DSM 19594 hypothetical protein YP_004655879.1 2694649 R 761193 CDS YP_004655880.1 338211827 10870868 2694881..2696248 1 NC_015703.1 PFAM: X-Pro dipeptidyl-peptidase (S15 family); COGs: COG1280 threonine efflux protein; InterPro IPR001123; KEGG: dfe:Dfer_0472 lysine exporter protein (LysE/YggA); PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: Lysine exporter protein (LYSE/YGGA); alpha/beta hydrolase 2696248 10870868 Runsl_2337 Runella slithyformis DSM 19594 alpha/beta hydrolase YP_004655880.1 2694881 D 761193 CDS YP_004655881.1 338211828 10870869 complement(2696251..2696877) 1 NC_015703.1 PFAM: LysE type translocator; InterPro IPR000086; KEGG: dfe:Dfer_0471 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; lysine exporter protein LysE/YggA 2696877 10870869 Runsl_2338 Runella slithyformis DSM 19594 lysine exporter protein LysE/YggA YP_004655881.1 2696251 R 761193 CDS YP_004655882.1 338211829 10870870 complement(2696935..2697492) 1 NC_015703.1 PFAM: NUDIX domain; COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: sli:Slin_1661 cation diffusion facilitator family transporter; PFAM: Cation efflux protein; SPTR: Cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; NUDIX hydrolase 2697492 10870870 Runsl_2339 Runella slithyformis DSM 19594 NUDIX hydrolase YP_004655882.1 2696935 R 761193 CDS YP_004655883.1 338211830 10870871 2697594..2698622 1 NC_015703.1 PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter; COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; InterPro IPR000583; KEGG: sli:Slin_5971 amidophosphoribosyltransferase; PFAM: Glutamine amidotransferase, class-II; PRIAM: Amidophosphoribosyltransferase; SPTR: Amidophosphoribosyltransferase; cation diffusion facilitator family transporter 2698622 10870871 Runsl_2340 Runella slithyformis DSM 19594 cation diffusion facilitator family transporter YP_004655883.1 2697594 D 761193 CDS YP_004655884.1 338211831 10870872 2698785..2700692 1 NC_015703.1 PFAM: Glutamine amidotransferases class-II; Prodigal; manually curated; amidophosphoribosyltransferase 2700692 10870872 Runsl_2341 Runella slithyformis DSM 19594 amidophosphoribosyltransferase YP_004655884.1 2698785 D 761193 CDS YP_004655885.1 338211832 10870874 complement(2702232..2702606) 1 NC_015703.1 KEGG: sli:Slin_3426 hypothetical protein; SPTR: PKD domain protein; hypothetical protein 2702606 10870874 Runsl_2343 Runella slithyformis DSM 19594 hypothetical protein YP_004655885.1 2702232 R 761193 CDS YP_004655886.1 338211833 10870875 complement(2702712..2704115) 1 NC_015703.1 hypothetical protein 2704115 10870875 Runsl_2344 Runella slithyformis DSM 19594 hypothetical protein YP_004655886.1 2702712 R 761193 CDS YP_004655887.1 338211834 10870876 complement(2704082..2704609) 1 NC_015703.1 KEGG: lby:Lbys_0531 peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: Peptidase S8 and S53 subtilisin kexin sedolisin; hypothetical protein 2704609 10870876 Runsl_2345 Runella slithyformis DSM 19594 hypothetical protein YP_004655887.1 2704082 R 761193 CDS YP_004655888.1 338211835 10870877 complement(2704645..2704932) 1 NC_015703.1 peptidase S8 and S53 subtilisin kexin sedolisin 2704932 10870877 Runsl_2346 Runella slithyformis DSM 19594 peptidase S8 and S53 subtilisin kexin sedolisin YP_004655888.1 2704645 R 761193 CDS YP_004655889.1 338211836 10870878 complement(2704880..2705905) 1 NC_015703.1 KEGG: rbi:RB2501_15219 DNA-binding protein; hypothetical protein 2705905 10870878 Runsl_2347 Runella slithyformis DSM 19594 hypothetical protein YP_004655889.1 2704880 R 761193 CDS YP_004655890.1 338211837 10870879 complement(2706055..2706375) 1 NC_015703.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR006311:IPR012307; KEGG: sli:Slin_4026 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; hypothetical protein 2706375 10870879 Runsl_2348 Runella slithyformis DSM 19594 hypothetical protein YP_004655890.1 2706055 R 761193 CDS YP_004655891.1 338211838 10870880 2706555..2707478 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: dfe:Dfer_5546 hypothetical protein; SPTR: uncharacterized protein; xylose isomerase domain-containing protein 2707478 10870880 Runsl_2349 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004655891.1 2706555 D 761193 CDS YP_004655892.1 338211839 10870881 complement(2707481..2707909) 1 NC_015703.1 COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: phe:Phep_0589 histidine kinase internal subunit; PFAM: Signal transduction histidine kinase, internal region; SPTR: Histidine kinase internal region; hypothetical protein 2707909 10870881 Runsl_2350 Runella slithyformis DSM 19594 hypothetical protein YP_004655892.1 2707481 R 761193 CDS YP_004655893.1 338211840 10870882 2708146..2709714 1 NC_015703.1 PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: phe:Phep_0588 response regulator receiver; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two-component response regulator; signal transduction histidine kinase 2709714 10870882 Runsl_2351 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004655893.1 2708146 D 761193 CDS YP_004655894.1 338211841 10870883 2709758..2710495 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; InterPro IPR003838; KEGG: zpr:ZPR_4635 transporter permease; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: transporter permease; LytTR family two component transcriptional regulator 2710495 10870883 Runsl_2352 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004655894.1 2709758 D 761193 CDS YP_004655895.1 338211842 10870884 complement(2710516..2713191) 1 NC_015703.1 PFAM: Predicted permease; InterPro IPR005149; KEGG: sli:Slin_0940 PadR family transcriptional regulator; PFAM: Transcriptional regulator PadR N-terminal-like; SPTR: Transcriptional regulator, PadR-like family; hypothetical protein 2713191 10870884 Runsl_2353 Runella slithyformis DSM 19594 hypothetical protein YP_004655895.1 2710516 R 761193 CDS YP_004655896.1 338211843 10870885 complement(2713188..2713700) 1 NC_015703.1 PFAM: Transcriptional regulator PadR-like family; InterPro IPR011701; KEGG: sli:Slin_3632 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; PadR family transcriptional regulator 2713700 10870885 Runsl_2354 Runella slithyformis DSM 19594 PadR family transcriptional regulator YP_004655896.1 2713188 R 761193 CDS YP_004655897.1 338211844 10870886 2713920..2715212 1 NC_015703.1 PFAM: Major Facilitator Superfamily; InterPro IPR011701; KEGG: sli:Slin_3633 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; major facilitator superfamily protein 2715212 10870886 Runsl_2355 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004655897.1 2713920 D 761193 CDS YP_004655898.1 338211845 10870887 2715337..2716548 1 NC_015703.1 PFAM: Major Facilitator Superfamily; KEGG: sli:Slin_5605 hypothetical protein; SPTR: uncharacterized protein; major facilitator superfamily protein 2716548 10870887 Runsl_2356 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004655898.1 2715337 D 761193 CDS YP_004655899.1 338211846 10870888 complement(2716677..2717750) 1 NC_015703.1 KEGG: sli:Slin_5604 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2717750 10870888 Runsl_2357 Runella slithyformis DSM 19594 hypothetical protein YP_004655899.1 2716677 R 761193 CDS YP_004655900.1 338211847 10870889 complement(2717728..2718396) 1 NC_015703.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_5603 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; hypothetical protein 2718396 10870889 Runsl_2358 Runella slithyformis DSM 19594 hypothetical protein YP_004655900.1 2717728 R 761193 CDS YP_004655901.1 338211848 10870890 complement(2718505..2719071) 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR004488:IPR002523; KEGG: dfe:Dfer_3288 magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like; SPTR: Magnesium and cobalt transport protein CorA; TIGRFAM: Magnesium/cobalt transport protein CorA; ECF subfamily RNA polymerase sigma-24 subunit 2719071 10870890 Runsl_2359 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004655901.1 2718505 R 761193 CDS YP_004655902.1 338211849 10870891 2719252..2720196 1 NC_015703.1 PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA); InterPro IPR005632; KEGG: dfe:Dfer_4390 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); magnesium and cobalt transport protein CorA 2720196 10870891 Runsl_2360 Runella slithyformis DSM 19594 magnesium and cobalt transport protein CorA YP_004655902.1 2719252 D 761193 CDS YP_004655903.1 338211850 10870892 complement(2720280..2720945) 1 NC_015703.1 PFAM: Outer membrane protein (OmpH-like); COGs: COG2825 Outer membrane protein; InterPro IPR005632; KEGG: dfe:Dfer_4389 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp 2720945 10870892 Runsl_2361 Runella slithyformis DSM 19594 outer membrane chaperone Skp YP_004655903.1 2720280 R 761193 CDS YP_004655904.1 338211851 10870893 complement(2720952..2721569) 1 NC_015703.1 PFAM: Outer membrane protein (OmpH-like); COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR016474:IPR010827:IPR000184; KEGG: dfe:Dfer_4388 outer membrane protein assembly complex, YaeT protein; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Outer membrane protein assembly complex, YaeT protein; TIGRFAM: Outer membrane assembly protein, YaeT; outer membrane chaperone Skp 2721569 10870893 Runsl_2362 Runella slithyformis DSM 19594 outer membrane chaperone Skp YP_004655904.1 2720952 R 761193 CDS YP_004655905.1 338211852 10870894 complement(2721638..2724283) 1 NC_015703.1 PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein; COGs: COG0020 Undecaprenyl pyrophosphate synthase; HAMAP: Undecaprenyl pyrophosphate synthase; InterPro IPR001441; KEGG: dfe:Dfer_4387 undecaprenyl diphosphate synthase; PFAM:Di-trans-poly-cis-decaprenylcistransferase-lik e; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; SPTR: Undecaprenyl diphosphate synthase; TIGRFAM:Di-trans-poly-cis-decaprenylcistransferase- like; outer membrane protein assembly complex, YaeT protein 2724283 10870894 Runsl_2363 Runella slithyformis DSM 19594 outer membrane protein assembly complex, YaeT protein YP_004655905.1 2721638 R 761193 CDS YP_004655906.1 338211853 10870895 complement(2724439..2725188) 1 NC_015703.1 PFAM: undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: sli:Slin_6251 MATE efflux family protein; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; UDP pyrophosphate synthase 2725188 10870895 Runsl_2364 Runella slithyformis DSM 19594 UDP pyrophosphate synthase YP_004655906.1 2724439 R 761193 CDS YP_004655907.1 338211854 10870896 complement(2725342..2726727) 1 NC_015703.1 PFAM: MatE; TIGRFAM: efflux protein, MATE family; COGs: COG2319 FOG: WD40 repeat; InterPro IPR001680:IPR019781; KEGG: sli:Slin_5836 hypothetical protein; PFAM: WD40 repeat, subgroup; SMART: WD40 repeat; SPTR: WD40 repeat, subgroup; MATE efflux family protein 2726727 10870896 Runsl_2365 Runella slithyformis DSM 19594 MATE efflux family protein YP_004655907.1 2725342 R 761193 CDS YP_004655908.1 338211855 10870897 complement(2726782..2727696) 1 NC_015703.1 PFAM: WD domain, G-beta repeat; InterPro IPR008278; KEGG: dfe:Dfer_2892 4'-phosphopantetheinyl transferase; PFAM: 4'-phosphopantetheinyl transferase; SPTR: 4'-phosphopantetheinyl transferase; hypothetical protein 2727696 10870897 Runsl_2366 Runella slithyformis DSM 19594 hypothetical protein YP_004655908.1 2726782 R 761193 CDS YP_004655909.1 338211856 10870898 2727794..2728429 1 NC_015703.1 PFAM: 4'-phosphopantetheinyl transferase superfamily; COGs: COG2912 conserved hypothetical protein; KEGG: sli:Slin_5838 hypothetical protein; SPTR: uncharacterized protein; 4'-phosphopantetheinyl transferase 2728429 10870898 Runsl_2367 Runella slithyformis DSM 19594 4'-phosphopantetheinyl transferase YP_004655909.1 2727794 D 761193 CDS YP_004655910.1 338211857 10870899 complement(2728436..2729341) 1 NC_015703.1 COGs: COG1087 UDP-glucose 4-epimerase; InterPro IPR005886:IPR001509; KEGG: dfe:Dfer_2894 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucose 4-epimerase; SPTR: UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; hypothetical protein 2729341 10870899 Runsl_2368 Runella slithyformis DSM 19594 hypothetical protein YP_004655910.1 2728436 R 761193 CDS YP_004655911.1 338211858 10870900 2729378..2730400 1 NC_015703.1 PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: UDP-glucose-4-epimerase; COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR005888:IPR001509; KEGG: lby:Lbys_1313 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: dTDP-glucose 4,6-dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; UDP-glucose 4-epimerase 2730400 10870900 Runsl_2369 Runella slithyformis DSM 19594 UDP-glucose 4-epimerase YP_004655911.1 2729378 D 761193 CDS YP_004655912.1 338211859 10870901 2730441..2731496 1 NC_015703.1 PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; InterPro IPR001434:IPR008454; KEGG: hau:Haur_1649 Cna B domain-containing protein; PFAM: Collagen-binding surface protein Cna-like, B region; Protein of unknown function DUF11; SPTR: Cna B domain protein; TIGRFAM: Protein of unknown function DUF11; dTDP-glucose 4,6-dehydratase 2731496 10870901 Runsl_2370 Runella slithyformis DSM 19594 dTDP-glucose 4,6-dehydratase YP_004655912.1 2730441 D 761193 CDS YP_004655913.1 338211860 10870902 complement(2731571..2735413) 1 NC_015703.1 PFAM: Domain of unknown function DUF11; Cna protein B-type domain; TIGRFAM: conserved repeat domain; hypothetical protein 2735413 10870902 Runsl_2371 Runella slithyformis DSM 19594 hypothetical protein YP_004655913.1 2731571 R 761193 CDS YP_004655914.1 338211861 10870903 complement(2735785..2735913) 1 NC_015703.1 COGs: COG1560 Lauroyl/myristoyl acyltransferase; KEGG: sli:Slin_5978 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2735913 10870903 Runsl_2372 Runella slithyformis DSM 19594 hypothetical protein YP_004655914.1 2735785 R 761193 CDS YP_004655915.1 338211862 10870904 complement(2736356..2737465) 1 NC_015703.1 PFAM: Bacterial lipid A biosynthesis acyltransferase; hypothetical protein 2737465 10870904 Runsl_2373 Runella slithyformis DSM 19594 hypothetical protein YP_004655915.1 2736356 R 761193 CDS YP_004655916.1 338211863 10870905 complement(2737476..2737652) 1 NC_015703.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: sli:Slin_5976 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: Response regulator receiver protein; hypothetical protein 2737652 10870905 Runsl_2374 Runella slithyformis DSM 19594 hypothetical protein YP_004655916.1 2737476 R 761193 CDS YP_004655917.1 338211864 10870906 2737907..2738893 1 NC_015703.1 PFAM: LytTr DNA-binding domain; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792; KEGG: sli:Slin_5975 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: Two component transcriptional regulator, LuxR family; response regulator receiver protein 2738893 10870906 Runsl_2375 Runella slithyformis DSM 19594 response regulator receiver protein YP_004655917.1 2737907 D 761193 CDS YP_004655918.1 338211865 10870907 complement(2738904..2739584) 1 NC_015703.1 PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; COGs: COG0105 Nucleoside diphosphate kinase; HAMAP: Nucleoside diphosphate kinase; InterPro IPR001564; KEGG: sli:Slin_6029 nucleoside-diphosphate kinase; PFAM: Nucleoside diphosphate kinase, core; PRIAM: Nucleoside-diphosphate kinase; SMART: Nucleoside diphosphate kinase, core; SPTR: Nucleoside-diphosphate kinase; LuxR family transcriptional regulator 2739584 10870907 Runsl_2376 Runella slithyformis DSM 19594 LuxR family transcriptional regulator YP_004655918.1 2738904 R 761193 CDS YP_004655919.1 338211866 10870908 complement(2739778..2740197) 1 NC_015703.1 PFAM: Nucleoside diphosphate kinase; COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667:IPR003156; KEGG: dfe:Dfer_4381 phosphoesterase RecJ domain protein; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; SPTR: Phosphoesterase RecJ domain protein; nucleoside diphosphate kinase 2740197 10870908 Runsl_2377 Runella slithyformis DSM 19594 nucleoside diphosphate kinase YP_004655919.1 2739778 R 761193 CDS YP_004655920.1 338211867 10870909 2740392..2741420 1 NC_015703.1 PFAM: DHH family; DHHA1 domain; COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: sli:Slin_6027 peptidylprolyl isomerase FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; PRIAM: Peptidylprolyl isomerase; SPTR: Peptidyl-prolyl cis-trans isomerase; phosphoesterase RecJ domain-containing protein 2741420 10870909 Runsl_2378 Runella slithyformis DSM 19594 phosphoesterase RecJ domain-containing protein YP_004655920.1 2740392 D 761193 CDS YP_004655921.1 338211868 10870910 2741517..2742398 1 NC_015703.1 PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: sli:Slin_4431 peptidylprolyl isomerase FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; peptidyl-prolyl isomerase 2742398 10870910 Runsl_2379 Runella slithyformis DSM 19594 peptidyl-prolyl isomerase YP_004655921.1 2741517 D 761193 CDS YP_004655922.1 338211869 10870911 2742515..2743450 1 NC_015703.1 PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; COGs: COG0127 Xanthosine triphosphate pyrophosphatase; HAMAP: Nucleoside-triphosphatase rdgB; InterPro IPR002637; KEGG: sli:Slin_6026 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; PFAM: Ham1-like protein; PRIAM: Nucleoside-triphosphatase; SPTR: Nucleoside-triphosphatase; TIGRFAM: Ham1-like protein; FKBP-type peptidylprolyl isomerase 2743450 10870911 Runsl_2380 Runella slithyformis DSM 19594 FKBP-type peptidylprolyl isomerase YP_004655922.1 2742515 D 761193 CDS YP_004655923.1 338211870 10870912 2743504..2744082 1 NC_015703.1 PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; COGs: COG3975 protease with the C-terminal PDZ domain; InterPro IPR007963; KEGG: dfe:Dfer_4157 peptidase M61 domain protein; PFAM: Peptidase M61; SPTR: Peptidase M61 domain protein; nucleoside-triphosphatase rdgB 2744082 10870912 Runsl_2381 Runella slithyformis DSM 19594 nucleoside-triphosphatase rdgB YP_004655923.1 2743504 D 761193 CDS YP_004655924.1 338211871 10870913 2744521..2745987 1 NC_015703.1 PFAM: M61 glycyl aminopeptidase; InterPro IPR019933:IPR007793; KEGG: sli:Slin_5835 DivIVA domain protein; PFAM: DivIVA; SPTR: DivIVA domain protein; TIGRFAM: DivIVA domain; peptidase M61 domain-containing protein 2745987 10870913 Runsl_2382 Runella slithyformis DSM 19594 peptidase M61 domain-containing protein YP_004655924.1 2744521 D 761193 CDS YP_004655925.1 338211872 10870914 2746062..2746904 1 NC_015703.1 PFAM: DivIVA protein; TIGRFAM: DivIVA domain; COGs: COG1539 Dihydroneopterin aldolase; InterPro IPR006157:IPR006156; KEGG: dfe:Dfer_2889 dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; SPTR: Dihydroneopterin aldolase; TIGRFAM: Dihydroneopterin aldolase subgroup; Dihydroneopterin aldolase; DivIVA domain-containing protein 2746904 10870914 Runsl_2383 Runella slithyformis DSM 19594 DivIVA domain-containing protein YP_004655925.1 2746062 D 761193 CDS YP_004655926.1 338211873 10870915 2746929..2747279 1 NC_015703.1 PFAM: Dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; FolB domain; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: lby:Lbys_0664 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; dihydroneopterin aldolase 2747279 10870915 Runsl_2384 Runella slithyformis DSM 19594 dihydroneopterin aldolase YP_004655926.1 2746929 D 761193 CDS YP_004655927.1 338211874 10870916 complement(2747438..2748904) 1 NC_015703.1 PFAM: Oxidoreductase, C-terminal alpha/beta domain; Oxidoreductase, NAD-binding Rossmann fold; COGs: COG2173 D-alanyl-D-alanine dipeptidase; InterPro IPR000755; KEGG: sli:Slin_4461 peptidase M15D VanX D-ala-D-ala dipeptidase; PFAM: Peptidase M15D, vanX D-ala-D-ala dipeptidase; SPTR: Peptidase M15D vanX D-ala-D-ala dipeptidase; oxidoreductase domain-containing protein 2748904 10870916 Runsl_2385 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004655927.1 2747438 R 761193 CDS YP_004655928.1 338211875 10870917 2749144..2749812 1 NC_015703.1 PFAM: D-ala-D-ala dipeptidase; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827; KEGG: dfe:Dfer_3223 surface antigen variable number repeat protein; PFAM: Surface antigen variable number; SPTR: Surface antigen variable number repeat protein; peptidase M15D vanX D-ala-D-ala dipeptidase 2749812 10870917 Runsl_2386 Runella slithyformis DSM 19594 peptidase M15D vanX D-ala-D-ala dipeptidase YP_004655928.1 2749144 D 761193 CDS YP_004655929.1 338211876 10870918 2749816..2751258 1 NC_015703.1 PFAM: Surface antigen variable number repeat; Surface antigen; KEGG: dfe:Dfer_3224 hypothetical protein; SPTR: uncharacterized protein; surface antigen variable number repeat-containing protein 2751258 10870918 Runsl_2387 Runella slithyformis DSM 19594 surface antigen variable number repeat-containing protein YP_004655929.1 2749816 D 761193 CDS YP_004655930.1 338211877 10870919 2751563..2752162 1 NC_015703.1 COGs: COG1251 NAD(P)H-nitrite reductase; InterPro IPR013027; KEGG: zpr:ZPR_4195 nitrite reductase (NAD(P)H) large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Rubredoxin--NAD(+) reductase; SPTR: Pyridine nucleotide-disulphide oxidoreductase domain protein; hypothetical protein 2752162 10870919 Runsl_2388 Runella slithyformis DSM 19594 hypothetical protein YP_004655930.1 2751563 D 761193 CDS YP_004655931.1 338211878 10870920 2752214..2753572 1 NC_015703.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814; KEGG: dfe:Dfer_4419 aminotransferase class-III; PFAM: Aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: Aminotransferase class-III; rubredoxin--NAD(+) reductase 2753572 10870920 Runsl_2389 Runella slithyformis DSM 19594 rubredoxin--NAD(+) reductase YP_004655931.1 2752214 D 761193 CDS YP_004655932.1 338211879 10870921 complement(2753730..2754863) 1 NC_015703.1 PFAM: Aminotransferase class-III; COGs: COG1524 Uncharacterized protein of the AP superfamily; InterPro IPR002591; KEGG: dfe:Dfer_2886 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase; acetylornithine transaminase 2754863 10870921 Runsl_2390 Runella slithyformis DSM 19594 acetylornithine transaminase YP_004655932.1 2753730 R 761193 CDS YP_004655933.1 338211880 10870922 complement(2755535..2756917) 1 NC_015703.1 PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase; KEGG: dfe:Dfer_2885 hypothetical protein; SPTR: uncharacterized protein; type I phosphodiesterase/nucleotide pyrophosphatase 2756917 10870922 Runsl_2391 Runella slithyformis DSM 19594 type I phosphodiesterase/nucleotide pyrophosphatase YP_004655933.1 2755535 R 761193 CDS YP_004655934.1 338211881 10870923 complement(2757159..2758355) 1 NC_015703.1 COGs: COG0337 3-dehydroquinate synthetase; InterPro IPR002658; KEGG: dfe:Dfer_2884 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase AroB; PRIAM: 3-dehydroquinate synthase; SPTR: 3-dehydroquinate synthase; hypothetical protein 2758355 10870923 Runsl_2392 Runella slithyformis DSM 19594 hypothetical protein YP_004655934.1 2757159 R 761193 CDS YP_004655935.1 338211882 10870924 complement(2758531..2759697) 1 NC_015703.1 PFAM: 3-dehydroquinate synthase; COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537; KEGG: dfe:Dfer_2883 UbiA prenyltransferase; PFAM: UbiA prenyltransferase; SPTR: UbiA prenyltransferase; 3-dehydroquinate synthase 2759697 10870924 Runsl_2393 Runella slithyformis DSM 19594 3-dehydroquinate synthase YP_004655935.1 2758531 R 761193 CDS YP_004655936.1 338211883 10870925 complement(2759711..2760589) 1 NC_015703.1 PFAM: UbiA prenyltransferase; COGs: COG1099 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR001130; KEGG: dfe:Dfer_2882 TatD-related deoxyribonuclease; PFAM: Deoxyribonuclease, TatD-related; SPTR: TatD-related deoxyribonuclease; UbiA prenyltransferase 2760589 10870925 Runsl_2394 Runella slithyformis DSM 19594 UbiA prenyltransferase YP_004655936.1 2759711 R 761193 CDS YP_004655937.1 338211884 10870926 complement(2760591..2761610) 1 NC_015703.1 PFAM: TatD related DNase; KEGG: dfe:Dfer_2881 hypothetical protein; SPTR: uncharacterized protein; TatD-related deoxyribonuclease 2761610 10870926 Runsl_2395 Runella slithyformis DSM 19594 TatD-related deoxyribonuclease YP_004655937.1 2760591 R 761193 CDS YP_004655938.1 338211885 10870927 complement(2761621..2762472) 1 NC_015703.1 COGs: COG0315 Molybdenum cofactor biosynthesis enzyme; InterPro IPR002820; KEGG: sli:Slin_2809 molybdenum cofactor biosynthesis protein C; PFAM: Molybdopterin cofactor biosynthesis MoaC region; SPTR: Molybdenum cofactor biosynthesis protein C; TIGRFAM: Molybdopterin cofactor biosynthesis MoaC region; hypothetical protein 2762472 10870927 Runsl_2396 Runella slithyformis DSM 19594 hypothetical protein YP_004655938.1 2761621 R 761193 CDS YP_004655939.1 338211886 10870928 2762646..2763122 1 NC_015703.1 PFAM: MoaC family; TIGRFAM: molybdenum cofactor biosynthesis protein MoaC; KEGG: sli:Slin_3341 hypothetical protein; SPTR: uncharacterized protein; molybdenum cofactor biosynthesis protein C 2763122 10870928 Runsl_2397 Runella slithyformis DSM 19594 molybdenum cofactor biosynthesis protein C YP_004655939.1 2762646 D 761193 CDS YP_004655940.1 338211887 10870929 complement(2763130..2764194) 1 NC_015703.1 KEGG: sli:Slin_4633 transmembrane anti-sigma factor; SPTR: transmembrane anti-sigma factor; hypothetical protein 2764194 10870929 Runsl_2398 Runella slithyformis DSM 19594 hypothetical protein YP_004655940.1 2763130 R 761193 CDS YP_004655941.1 338211888 10870930 complement(2764338..2765321) 1 NC_015703.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_1125 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein 2765321 10870930 Runsl_2399 Runella slithyformis DSM 19594 hypothetical protein YP_004655941.1 2764338 R 761193 CDS YP_004655942.1 338211889 10870931 complement(2765293..2765835) 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG4115 conserved hypothetical protein; InterPro IPR009614; KEGG: cyt:cce_1706 addiction module toxin, Txe/YoeB; PFAM: Addiction module toxin, Txe/YoeB; SPTR: Genome sequencing data, contig C327; TIGRFAM: Addiction module toxin, Txe/YoeB; ECF subfamily RNA polymerase sigma-24 subunit 2765835 10870931 Runsl_2400 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004655942.1 2765293 R 761193 CDS YP_004655943.1 338211890 10870932 complement(2766133..2766396) 1 NC_015703.1 PFAM: Plasmid encoded toxin Txe; TIGRFAM: toxin-antitoxin system, toxin component, Txe/YoeB family; Txe/YoeB family addiction module toxin 2766396 10870932 Runsl_2401 Runella slithyformis DSM 19594 Txe/YoeB family addiction module toxin YP_004655943.1 2766133 R 761193 CDS YP_004655944.1 338211891 10870933 complement(2766393..2766602) 1 NC_015703.1 COGs: COG0078 Ornithine carbamoyltransferase; InterPro IPR006132:IPR006131; KEGG: dfe:Dfer_4418 aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; PRIAM: N-acetylornithine carbamoyltransferase; SPTR: Aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; hypothetical protein 2766602 10870933 Runsl_2402 Runella slithyformis DSM 19594 hypothetical protein YP_004655944.1 2766393 R 761193 CDS YP_004655945.1 338211892 10870934 complement(2766640..2767590) 1 NC_015703.1 PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; COGs: COG0386 Glutathione peroxidase; InterPro IPR000889; KEGG: dfe:Dfer_2679 glutathione peroxidase; PFAM: Glutathione peroxidase; SPTR: Glutathione peroxidase; N-acetylornithine carbamoyltransferase 2767590 10870934 Runsl_2403 Runella slithyformis DSM 19594 N-acetylornithine carbamoyltransferase YP_004655945.1 2766640 R 761193 CDS YP_004655946.1 338211893 10870935 complement(2767818..2768399) 1 NC_015703.1 PFAM: Glutathione peroxidase; InterPro IPR000620; KEGG: dfe:Dfer_2483 membrane protein containing DUF6; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: Membrane protein containing DUF6; glutathione peroxidase 2768399 10870935 Runsl_2404 Runella slithyformis DSM 19594 glutathione peroxidase YP_004655946.1 2767818 R 761193 CDS YP_004655947.1 338211894 10870936 complement(2768490..2769392) 1 NC_015703.1 PFAM: EamA-like transporter family; COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: sli:Slin_5951 peptidase M16 domain protein; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: Peptidase M16 domain protein; hypothetical protein 2769392 10870936 Runsl_2405 Runella slithyformis DSM 19594 hypothetical protein YP_004655947.1 2768490 R 761193 CDS YP_004655948.1 338211895 10870937 2769519..2770790 1 NC_015703.1 PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16); COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: dfe:Dfer_3628 peptidylprolyl isomerase FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; peptidase M16 domain-containing protein 2770790 10870937 Runsl_2406 Runella slithyformis DSM 19594 peptidase M16 domain-containing protein YP_004655948.1 2769519 D 761193 CDS YP_004655949.1 338211896 10870938 2770847..2771692 1 NC_015703.1 PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; COGs: COG0579 dehydrogenase; InterPro IPR006076; KEGG: sli:Slin_5628 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase; FKBP-type peptidylprolyl isomerase 2771692 10870938 Runsl_2407 Runella slithyformis DSM 19594 FKBP-type peptidylprolyl isomerase YP_004655949.1 2770847 D 761193 CDS YP_004655950.1 338211897 10870939 complement(2771849..2773054) 1 NC_015703.1 PFAM: FAD dependent oxidoreductase; COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: bur:Bcep18194_A3978 acetyltransferase; SPTR: uncharacterized protein; FAD dependent oxidoreductase 2773054 10870939 Runsl_2408 Runella slithyformis DSM 19594 FAD dependent oxidoreductase YP_004655950.1 2771849 R 761193 CDS YP_004655951.1 338211898 10870940 2773112..2773666 1 NC_015703.1 PFAM: Bacterial transferase hexapeptide (three repeats); Prodigal; manually curated; acetyltransferase 2773666 10870940 Runsl_2409 Runella slithyformis DSM 19594 acetyltransferase YP_004655951.1 2773112 D 761193 CDS YP_004655952.1 338211899 10870942 complement(2775036..2776379) 1 NC_015703.1 COGs: COG4152 ABC-type uncharacterized transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: sli:Slin_1739 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; ABC transporter 2776379 10870942 Runsl_2411 Runella slithyformis DSM 19594 ABC transporter YP_004655952.1 2775036 R 761193 CDS YP_004655953.1 338211900 10870943 complement(2776462..2777397) 1 NC_015703.1 PFAM: ABC transporter; manually curated; ABC transporter 2777397 10870943 Runsl_2412 Runella slithyformis DSM 19594 ABC transporter YP_004655953.1 2776462 R 761193 CDS YP_004655954.1 338211901 10870945 2778018..2778200 1 NC_015703.1 KEGG: dfe:Dfer_0080 cytochrome c-related protein; SPTR: Cytochrome c-related protein; hypothetical protein 2778200 10870945 Runsl_2414 Runella slithyformis DSM 19594 hypothetical protein YP_004655954.1 2778018 D 761193 CDS YP_004655955.1 338211902 10870946 2778197..2779198 1 NC_015703.1 PFAM: Cytochrome c; KEGG: sli:Slin_2866 hypothetical protein; SPTR: uncharacterized protein; cytochrome c-like protein 2779198 10870946 Runsl_2415 Runella slithyformis DSM 19594 cytochrome c-like protein YP_004655955.1 2778197 D 761193 CDS YP_004655956.1 338211903 10870947 2779281..2780153 1 NC_015703.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR011659:IPR001375; KEGG: sli:Slin_3267 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein; hypothetical protein 2780153 10870947 Runsl_2416 Runella slithyformis DSM 19594 hypothetical protein YP_004655956.1 2779281 D 761193 CDS YP_004655957.1 338211904 10870948 complement(2780360..2782465) 1 NC_015703.1 PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region; WD40-like Beta Propeller Repeat; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: dfe:Dfer_4672 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; SPTR: Aldehyde Dehydrogenase; peptidase S9 prolyl oligopeptidase active site domain-containing protein 2782465 10870948 Runsl_2417 Runella slithyformis DSM 19594 peptidase S9 prolyl oligopeptidase active site domain-containing protein YP_004655957.1 2780360 R 761193 CDS YP_004655958.1 338211905 10870949 2782721..2784115 1 NC_015703.1 PFAM: Aldehyde dehydrogenase; COGs: COG0518 GMP synthase - Glutamine amidotransferase domain; InterPro IPR000991; KEGG: dfe:Dfer_4674 amidotransferase, PFAM: Glutamine amidotransferase class-I, C-terminal; SPTR: Amidotransferase; aldehyde dehydrogenase 2784115 10870949 Runsl_2418 Runella slithyformis DSM 19594 aldehyde dehydrogenase YP_004655958.1 2782721 D 761193 CDS YP_004655959.1 338211906 10870950 2784218..2784928 1 NC_015703.1 PFAM: Glutamine amidotransferase class-I; glutamine amidotransferase 2784928 10870950 Runsl_2419 Runella slithyformis DSM 19594 glutamine amidotransferase YP_004655959.1 2784218 D 761193 CDS YP_004655960.1 338211907 10870951 2785031..2785621 1 NC_015703.1 InterPro IPR010496; KEGG: fbc:FB2170_08039 multi-domain-containing protein; PFAM: Protein of unknown function DUF1080; SPTR: multi-domain protein; hypothetical protein 2785621 10870951 Runsl_2420 Runella slithyformis DSM 19594 hypothetical protein YP_004655960.1 2785031 D 761193 CDS YP_004655961.1 338211908 10870952 2785713..2786489 1 NC_015703.1 PFAM: Domain of Unknown Function (DUF1080); KEGG: sus:Acid_3659 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2786489 10870952 Runsl_2421 Runella slithyformis DSM 19594 hypothetical protein YP_004655961.1 2785713 D 761193 CDS YP_004655962.1 338211909 10870953 complement(2786675..2787769) 1 NC_015703.1 InterPro IPR019115; KEGG: dfe:Dfer_2378 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: uncharacterized protein; hypothetical protein 2787769 10870953 Runsl_2422 Runella slithyformis DSM 19594 hypothetical protein YP_004655962.1 2786675 R 761193 CDS YP_004655963.1 338211910 10870954 complement(2787785..2788576) 1 NC_015703.1 PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; InterPro IPR000531; KEGG: sli:Slin_3443 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; hypothetical protein 2788576 10870954 Runsl_2423 Runella slithyformis DSM 19594 hypothetical protein YP_004655963.1 2787785 R 761193 CDS YP_004655964.1 338211911 10870955 complement(2788624..2791506) 1 NC_015703.1 PFAM: TonB dependent receptor; Prodigal; manually curated; TonB-dependent receptor 2791506 10870955 Runsl_2424 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004655964.1 2788624 R 761193 CDS YP_004655965.1 338211912 10870957 2793104..2793406 1 NC_015703.1 manually curated; transposase IS3/is911 family protein 2793406 10870957 Runsl_2426 Runella slithyformis DSM 19594 transposase IS3/is911 family protein YP_004655965.1 2793104 D 761193 CDS YP_004655966.1 338211913 10870960 complement(2794495..2794701) 1 NC_015703.1 COGs: COG0049 Ribosomal protein S7; InterPro IPR005717:IPR000235; KEGG: sli:Slin_4448 ribosomal protein S7; PFAM: Ribosomal protein S7; SPTR: 30S ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type; manually curated; hypothetical protein 2794701 10870960 Runsl_2429 Runella slithyformis DSM 19594 hypothetical protein YP_004655966.1 2794495 R 761193 CDS YP_004655967.1 338211914 10870961 complement(2794825..2795292) 1 NC_015703.1 PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle; COGs: COG0048 Ribosomal protein S12; InterPro IPR005679:IPR006032; KEGG: dfe:Dfer_4339 30S ribosomal protein S12; PFAM: Ribosomal protein S12/S23; SPTR: 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacterial-type; 30S ribosomal protein S7 2795292 10870961 Runsl_2430 Runella slithyformis DSM 19594 30S ribosomal protein S7 YP_004655967.1 2794825 R 761193 CDS YP_004655968.1 338211915 10870962 complement(2795455..2795877) 1 NC_015703.1 PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle; COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: fps:FP2000 thioredoxin family protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Thioredoxin family protein; 30S ribosomal protein S12 2795877 10870962 Runsl_2431 Runella slithyformis DSM 19594 30S ribosomal protein S12 YP_004655968.1 2795455 R 761193 CDS YP_004655969.1 338211916 10870963 complement(2796154..2796531) 1 NC_015703.1 PFAM: Rhodanese-like domain; COGs: COG0730 permease; InterPro IPR002781; KEGG: wvi:Weevi_0465 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: Membrane protein; rhodanese-like protein 2796531 10870963 Runsl_2432 Runella slithyformis DSM 19594 rhodanese-like protein YP_004655969.1 2796154 R 761193 CDS YP_004655970.1 338211917 10870964 complement(2796566..2797405) 1 NC_015703.1 PFAM: Sulfite exporter TauE/SafE; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: sli:Slin_0700 LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SPTR: Two component transcriptional regulator, LuxR family; hypothetical protein 2797405 10870964 Runsl_2433 Runella slithyformis DSM 19594 hypothetical protein YP_004655970.1 2796566 R 761193 CDS YP_004655971.1 338211918 10870965 complement(2797445..2798098) 1 NC_015703.1 PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594:IPR011712; KEGG: sli:Slin_0699 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; SMART: ATP-binding region, ATPase-like; SPTR: Histidine kinase; LuxR family transcriptional regulator 2798098 10870965 Runsl_2434 Runella slithyformis DSM 19594 LuxR family transcriptional regulator YP_004655971.1 2797445 R 761193 CDS YP_004655972.1 338211919 10870966 complement(2798108..2799544) 1 NC_015703.1 PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenase; InterPro IPR012748:IPR017941; KEGG: cao:Celal_1365 assimilatory nitrite reductase (nad(p)h) small subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Assimilatory nitrite reductase (NAD(P)H) small subunit; TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirD; signal transduction histidine kinase 2799544 10870966 Runsl_2435 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004655972.1 2798108 R 761193 CDS YP_004655973.1 338211920 10870967 complement(2799694..2800032) 1 NC_015703.1 PFAM: Rieske [2Fe-2S] domain; TIGRFAM: nitrite reductase [NAD(P)H], small subunit; COGs: COG1251 NAD(P)H-nitrite reductase; InterProIPR012744:IPR013027:IPR007419:IPR005117:IPR 006067; KEGG: chu:CHU_1332 assimilatory nitrite reductase (NAD(P)H) large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; Nitrite/sulphite reductase 4Fe-4S region; PRIAM: Nitrite reductase (NAD(P)H); SPTR: Assimilatory nitrite reductase (NAD(P)H) large subunit; TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirB; nitrite reductase (NAD(P)H) small subunit 2800032 10870967 Runsl_2436 Runella slithyformis DSM 19594 nitrite reductase (NAD(P)H) small subunit YP_004655973.1 2799694 R 761193 CDS YP_004655974.1 338211921 10870968 complement(2800065..2802584) 1 NC_015703.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; Nitrite and sulphite reductase 4Fe-4S domain; BFD-like [2Fe-2S] binding domain; Nitrite/Sulfite reductase ferredoxin-like half domain; TIGRFAM: nitrite reductase [NAD(P)H], large subunit; COGs: COG0007 Uroporphyrinogen-III methylase; InterPro IPR006366:IPR000878; KEGG: chu:CHU_2636 uroporphyrinogen-III C-methyltransferase; PFAM: Tetrapyrrole methylase; PRIAM: Uroporphyrinogen-III C-methyltransferase; SPTR: Uroporphyrinogen-III C-methyltransferase; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; nitrite reductase (NAD(P)H) large subunit 2802584 10870968 Runsl_2437 Runella slithyformis DSM 19594 nitrite reductase (NAD(P)H) large subunit YP_004655974.1 2800065 R 761193 CDS YP_004655975.1 338211922 10870969 2802977..2803738 1 NC_015703.1 PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase; COGs: COG3458 Acetyl esterase (deacetylase); InterPro IPR008391; KEGG: dfe:Dfer_2740 acetyl xylan esterase; PFAM: Acetyl xylan esterase; SPTR: Acetyl xylan esterase; uroporphyrin-III C-methyltransferase 2803738 10870969 Runsl_2438 Runella slithyformis DSM 19594 uroporphyrin-III C-methyltransferase YP_004655975.1 2802977 D 761193 CDS YP_004655976.1 338211923 10870970 2803752..2804906 1 NC_015703.1 PFAM: Acetyl xylan esterase (AXE1); COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277; KEGG: tle:Tlet_1106 cystathionine gamma-synthase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; PRIAM: Cystathionine beta-lyase; SPTR: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; acetyl xylan esterase 2804906 10870970 Runsl_2439 Runella slithyformis DSM 19594 acetyl xylan esterase YP_004655976.1 2803752 D 761193 CDS YP_004655977.1 338211924 10870971 complement(2804955..2806115) 1 NC_015703.1 PFAM: Cys/Met metabolism PLP-dependent enzyme; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: sli:Slin_2930 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SPTR: Histidine kinase; cystathionine beta-lyase 2806115 10870971 Runsl_2440 Runella slithyformis DSM 19594 cystathionine beta-lyase YP_004655977.1 2804955 R 761193 CDS YP_004655978.1 338211925 10870972 complement(2806211..2807641) 1 NC_015703.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: sli:Slin_2929 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family; integral membrane sensor signal transduction histidine kinase 2807641 10870972 Runsl_2441 Runella slithyformis DSM 19594 integral membrane sensor signal transduction histidine kinase YP_004655978.1 2806211 R 761193 CDS YP_004655979.1 338211926 10870973 complement(2807641..2808315) 1 NC_015703.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR003088:IPR005084; KEGG: dfe:Dfer_1484 PKD domain containing protein; PFAM: PKD; Cytochrome c, class I; Carbohydrate binding domain, family 6; SMART: PKD; SPTR: Transcriptional regulator, Crp/Fnr family; winged helix family two component transcriptional regulator 2808315 10870973 Runsl_2442 Runella slithyformis DSM 19594 winged helix family two component transcriptional regulator YP_004655979.1 2807641 R 761193 CDS YP_004655980.1 338211927 10870974 2808577..2811432 1 NC_015703.1 PFAM: Cytochrome c; PKD domain; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR006311:IPR012307; KEGG: sli:Slin_0334 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; PKD domain-containing protein 2811432 10870974 Runsl_2443 Runella slithyformis DSM 19594 PKD domain-containing protein YP_004655980.1 2808577 D 761193 CDS YP_004655981.1 338211928 10870975 2811536..2812465 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; InterPro IPR000086; KEGG: sli:Slin_0652 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: uncharacterized protein; xylose isomerase domain-containing protein 2812465 10870975 Runsl_2444 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004655981.1 2811536 D 761193 CDS YP_004655982.1 338211929 10870976 complement(2812575..2813306) 1 NC_015703.1 PFAM: NUDIX domain; InterPro IPR012910:IPR000531; KEGG: sli:Slin_0274 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; NUDIX hydrolase 2813306 10870976 Runsl_2445 Runella slithyformis DSM 19594 NUDIX hydrolase YP_004655982.1 2812575 R 761193 CDS YP_004655983.1 338211930 10870977 2813956..2817186 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_4947 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 2817186 10870977 Runsl_2446 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004655983.1 2813956 D 761193 CDS YP_004655984.1 338211931 10870978 2817218..2818954 1 NC_015703.1 PFAM: SusD family; InterPro IPR013517:IPR011519; KEGG: dfe:Dfer_4948 ASPIC/UnbV domain protein; PFAM: ASPIC/UnbV; FG-GAP; SPTR: ASPIC/UnbV domain protein; RagB/SusD domain-containing protein 2818954 10870978 Runsl_2447 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004655984.1 2817218 D 761193 CDS YP_004655985.1 338211932 10870979 2819106..2822657 1 NC_015703.1 PFAM: ASPIC and UnbV; FG-GAP repeat; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterProIPR005897:IPR003593:IPR005074:IPR001140:IPR 003439; KEGG: zpr:ZPR_4399 bacteriocin/lantibiotic ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Probable bacteriocin/lantibiotic ABC transporter, ATP-binding protein; TIGRFAM: Peptidase C39, ABC-type bacteriocin transporter; ASPIC/UnbV domain-containing protein 2822657 10870979 Runsl_2448 Runella slithyformis DSM 19594 ASPIC/UnbV domain-containing protein YP_004655985.1 2819106 D 761193 CDS YP_004655986.1 338211933 10870980 complement(2822728..2824935) 1 NC_015703.1 PFAM: Peptidase C39 family; ABC transporter transmembrane region; ABC transporter; TIGRFAM: ABC-type bacteriocin transporter; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: shg:Sph21_1896 secretion protein HlyD family protein; PFAM: Secretion protein HlyD; SPTR: Secretion protein HlyD family protein; bacteriocin ABC transporter 2824935 10870980 Runsl_2449 Runella slithyformis DSM 19594 bacteriocin ABC transporter YP_004655986.1 2822728 R 761193 CDS YP_004655987.1 338211934 10870981 complement(2824975..2826174) 1 NC_015703.1 KEGG: pdi:BDI_1304 hypothetical protein; SPTR: uncharacterized protein; secretion protein HlyD family protein 2826174 10870981 Runsl_2450 Runella slithyformis DSM 19594 secretion protein HlyD family protein YP_004655987.1 2824975 R 761193 CDS YP_004655988.1 338211935 10870982 complement(2826296..2828227) 1 NC_015703.1 hypothetical protein 2828227 10870982 Runsl_2451 Runella slithyformis DSM 19594 hypothetical protein YP_004655988.1 2826296 R 761193 CDS YP_004655989.1 338211936 10870983 complement(2828311..2828517) 1 NC_015703.1 hypothetical protein 2828517 10870983 Runsl_2452 Runella slithyformis DSM 19594 hypothetical protein YP_004655989.1 2828311 R 761193 CDS YP_004655990.1 338211937 10870984 complement(2828551..2828751) 1 NC_015703.1 hypothetical protein 2828751 10870984 Runsl_2453 Runella slithyformis DSM 19594 hypothetical protein YP_004655990.1 2828551 R 761193 CDS YP_004655991.1 338211938 10870985 complement(2828845..2829057) 1 NC_015703.1 hypothetical protein 2829057 10870985 Runsl_2454 Runella slithyformis DSM 19594 hypothetical protein YP_004655991.1 2828845 R 761193 CDS YP_004655992.1 338211939 10870986 complement(2829225..2829407) 1 NC_015703.1 hypothetical protein 2829407 10870986 Runsl_2455 Runella slithyformis DSM 19594 hypothetical protein YP_004655992.1 2829225 R 761193 CDS YP_004655993.1 338211940 10870987 complement(2829506..2829712) 1 NC_015703.1 InterPro IPR001387; KEGG: fjo:Fjoh_4208 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; hypothetical protein 2829712 10870987 Runsl_2456 Runella slithyformis DSM 19594 hypothetical protein YP_004655993.1 2829506 R 761193 CDS YP_004655994.1 338211941 10870988 complement(2829876..2830130) 1 NC_015703.1 PFAM: Helix-turn-helix; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: cpi:Cpin_3396 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; helix-turn-helix domain-containing protein 2830130 10870988 Runsl_2457 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004655994.1 2829876 R 761193 CDS YP_004655995.1 338211942 10870989 complement(2830334..2831062) 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: cpi:Cpin_3395 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; LytTR family two component transcriptional regulator 2831062 10870989 Runsl_2458 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004655995.1 2830334 R 761193 CDS YP_004655996.1 338211943 10870990 complement(2831119..2832141) 1 NC_015703.1 PFAM: Histidine kinase; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: cpi:Cpin_6217 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; signal transduction histidine kinase 2832141 10870990 Runsl_2459 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004655996.1 2831119 R 761193 CDS YP_004655997.1 338211944 10870991 2832270..2834669 1 NC_015703.1 TonB-dependent receptor 2834669 10870991 Runsl_2460 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004655997.1 2832270 D 761193 CDS YP_004655998.1 338211945 10870992 2834682..2834822 1 NC_015703.1 hypothetical protein 2834822 10870992 Runsl_2461 Runella slithyformis DSM 19594 hypothetical protein YP_004655998.1 2834682 D 761193 CDS YP_004655999.1 338211946 10870993 2835313..2835498 1 NC_015703.1 hypothetical protein 2835498 10870993 Runsl_2462 Runella slithyformis DSM 19594 hypothetical protein YP_004655999.1 2835313 D 761193 CDS YP_004656000.1 338211947 10870994 2835520..2835759 1 NC_015703.1 hypothetical protein 2835759 10870994 Runsl_2463 Runella slithyformis DSM 19594 hypothetical protein YP_004656000.1 2835520 D 761193 CDS YP_004656001.1 338211948 10870995 2835756..2835959 1 NC_015703.1 InterPro IPR007822; KEGG: cpi:Cpin_3397 lanthionine synthetase C family protein; PFAM: Lanthionine synthetase C-like; SPTR: Lanthionine synthetase C family protein; hypothetical protein 2835959 10870995 Runsl_2464 Runella slithyformis DSM 19594 hypothetical protein YP_004656001.1 2835756 D 761193 CDS YP_004656002.1 338211949 10870996 2836020..2837192 1 NC_015703.1 PFAM: Lanthionine synthetase C-like protein; InterPro IPR006826:IPR006827; KEGG: cpi:Cpin_3392 lantibiotic dehydratase; PFAM: Lantibiotic dehydratase, C-terminal; Lantibiotic dehydratase, N-terminal; SPTR: Lantibiotic dehydratase domain protein; Lanthionine synthetase C family protein 2837192 10870996 Runsl_2465 Runella slithyformis DSM 19594 Lanthionine synthetase C family protein YP_004656002.1 2836020 D 761193 CDS YP_004656003.1 338211950 10870997 2837335..2840409 1 NC_015703.1 PFAM: Lantibiotic dehydratase, N terminus; Lantibiotic dehydratase, C terminus; TIGRFAM: thiopeptide-type bacteriocin biosynthesis domain; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR005074:IPR001140:IPR003439:IPR003593; KEGG: shg:Sph21_0591 xenobiotic-transporting ATPase; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Bacteriocin ABC transporter, ATP-binding/permease; Lantibiotic dehydratase domain-containing protein 2840409 10870997 Runsl_2466 Runella slithyformis DSM 19594 Lantibiotic dehydratase domain-containing protein YP_004656003.1 2837335 D 761193 CDS YP_004656004.1 338211951 10870998 complement(2840461..2842626) 1 NC_015703.1 PFAM: ABC transporter; ABC transporter transmembrane region; Peptidase C39 family; xenobiotic-transporting ATPase 2842626 10870998 Runsl_2467 Runella slithyformis DSM 19594 xenobiotic-transporting ATPase YP_004656004.1 2840461 R 761193 CDS YP_004656005.1 338211952 10870999 complement(2842686..2842847) 1 NC_015703.1 InterPro IPR013740; KEGG: ahe:Arch_1469 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Redoxin; SPTR: uncharacterized protein; hypothetical protein 2842847 10870999 Runsl_2468 Runella slithyformis DSM 19594 hypothetical protein YP_004656005.1 2842686 R 761193 CDS YP_004656006.1 338211953 10871000 complement(2842844..2843368) 1 NC_015703.1 PFAM: AhpC/TSA family; KEGG: shg:Sph21_0589 hypothetical protein; SPTR: uncharacterized protein; redoxin domain-containing protein 2843368 10871000 Runsl_2469 Runella slithyformis DSM 19594 redoxin domain-containing protein YP_004656006.1 2842844 R 761193 CDS YP_004656007.1 338211954 10871001 complement(2843382..2844023) 1 NC_015703.1 hypothetical protein 2844023 10871001 Runsl_2470 Runella slithyformis DSM 19594 hypothetical protein YP_004656007.1 2843382 R 761193 CDS YP_004656008.1 338211955 10871002 complement(2844137..2844301) 1 NC_015703.1 hypothetical protein 2844301 10871002 Runsl_2471 Runella slithyformis DSM 19594 hypothetical protein YP_004656008.1 2844137 R 761193 CDS YP_004656009.1 338211956 10871003 complement(2844453..2844653) 1 NC_015703.1 hypothetical protein 2844653 10871003 Runsl_2472 Runella slithyformis DSM 19594 hypothetical protein YP_004656009.1 2844453 R 761193 CDS YP_004656010.1 338211957 10871004 2845503..2845697 1 NC_015703.1 InterPro IPR001387; KEGG: sli:Slin_1148 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; hypothetical protein 2845697 10871004 Runsl_2473 Runella slithyformis DSM 19594 hypothetical protein YP_004656010.1 2845503 D 761193 CDS YP_004656011.1 338211958 10871005 complement(2845684..2845935) 1 NC_015703.1 PFAM: Helix-turn-helix; InterPro IPR012944; KEGG: sli:Slin_0022 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; helix-turn-helix domain-containing protein 2845935 10871005 Runsl_2474 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004656011.1 2845684 R 761193 CDS YP_004656012.1 338211959 10871006 complement(2846223..2847911) 1 NC_015703.1 PFAM: SusD family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_0021 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; RagB/SusD domain-containing protein 2847911 10871006 Runsl_2475 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004656012.1 2846223 R 761193 CDS YP_004656013.1 338211960 10871007 complement(2847923..2850940) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3282 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; TonB-dependent receptor plug 2850940 10871007 Runsl_2476 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004656013.1 2847923 R 761193 CDS YP_004656014.1 338211961 10871008 2851511..2854744 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_3283 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 2854744 10871008 Runsl_2477 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004656014.1 2851511 D 761193 CDS YP_004656015.1 338211962 10871009 2854779..2856542 1 NC_015703.1 PFAM: SusD family; COGs: COG1562 Phytoene/squalene synthetase; InterPro IPR002060; KEGG: sli:Slin_5959 squalene/phytoene synthase; PFAM: Squalene/phytoene synthase; SPTR: Squalene/phytoene synthase; RagB/SusD domain-containing protein 2856542 10871009 Runsl_2478 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004656015.1 2854779 D 761193 CDS YP_004656016.1 338211963 10871010 complement(2856699..2857553) 1 NC_015703.1 PFAM: Squalene/phytoene synthase; COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR014105:IPR002937; KEGG: sli:Slin_5960 phytoene desaturase; PFAM: Amine oxidase; SPTR: Phytoene desaturase; TIGRFAM: Zeta-phytoene desaturase; squalene/phytoene synthase 2857553 10871010 Runsl_2479 Runella slithyformis DSM 19594 squalene/phytoene synthase YP_004656016.1 2856699 R 761193 CDS YP_004656017.1 338211964 10871011 complement(2857583..2859136) 1 NC_015703.1 PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase; Prodigal; manually curated; phytoene desaturase 2859136 10871011 Runsl_2480 Runella slithyformis DSM 19594 phytoene desaturase YP_004656017.1 2857583 R 761193 CDS YP_004656018.1 338211965 10871013 complement(2859554..2859670) 1 NC_015703.1 InterPro IPR012944; KEGG: sli:Slin_3419 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; hypothetical protein 2859670 10871013 Runsl_2482 Runella slithyformis DSM 19594 hypothetical protein YP_004656018.1 2859554 R 761193 CDS YP_004656019.1 338211966 10871014 complement(2859859..2861415) 1 NC_015703.1 PFAM: SusD family; InterPro IPR012910:IPR000531; KEGG: sli:Slin_3420 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; RagB/SusD domain-containing protein 2861415 10871014 Runsl_2483 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004656019.1 2859859 R 761193 CDS YP_004656020.1 338211967 10871015 complement(2861451..2864669) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; TonB-dependent receptor plug 2864669 10871015 Runsl_2484 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004656020.1 2861451 R 761193 CDS YP_004656021.1 338211968 10871016 complement(2865152..2865796) 1 NC_015703.1 COGs: COG2936 acyl esterase; InterPro IPR005674:IPR000383:IPR013736; KEGG: sus:Acid_1582 X-Pro dipeptidyl-peptidase domain-containing protein; PFAM: Peptidase S15/CocE/NonD, C-terminal; Peptidase S15; SPTR: Acylase, ; TIGRFAM: CocE/NonD hydrolase; hypothetical protein 2865796 10871016 Runsl_2485 Runella slithyformis DSM 19594 hypothetical protein YP_004656021.1 2865152 R 761193 CDS YP_004656022.1 338211969 10871017 2866011..2867891 1 NC_015703.1 PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: hydrolase, CocE/NonD family; InterPro IPR002860; KEGG: aba:Acid345_0515 hypothetical protein; PFAM: BNR repeat; SPTR: uncharacterized protein; hydrolase 2867891 10871017 Runsl_2486 Runella slithyformis DSM 19594 hydrolase YP_004656022.1 2866011 D 761193 CDS YP_004656023.1 338211970 10871018 2867993..2871319 1 NC_015703.1 PFAM: BNR/Asp-box repeat; COGs: COG1649 conserved hypothetical protein; InterPro IPR003790:IPR003961; KEGG: dfe:Dfer_3734 protein of unknown function DUF187; PFAM: Protein of unknown function DUF187; Fibronectin, type III; SPTR: uncharacterized protein; glycosyl hydrolase family protein 2871319 10871018 Runsl_2487 Runella slithyformis DSM 19594 glycosyl hydrolase family protein YP_004656023.1 2867993 D 761193 CDS YP_004656024.1 338211971 10871019 2871430..2872995 1 NC_015703.1 PFAM: Uncharacterised BCR, COG1649; COGs: COG1912 conserved hypothetical protein; InterPro IPR002747; KEGG: cpi:Cpin_4936 hypothetical protein; PFAM: Protein of unknown function DUF62; SPTR: uncharacterized protein; hypothetical protein 2872995 10871019 Runsl_2488 Runella slithyformis DSM 19594 hypothetical protein YP_004656024.1 2871430 D 761193 CDS YP_004656025.1 338211972 10871020 complement(2873028..2873918) 1 NC_015703.1 PFAM: S-adenosyl-l-methionine hydroxide adenosyltransferase; COGs: COG3876 conserved hypothetical protein; InterPro IPR008302; KEGG: lil:LA_0544 hypothetical protein; PFAM: Uncharacterised conserved protein UCP016719; SPTR: uncharacterized protein; hypothetical protein 2873918 10871020 Runsl_2489 Runella slithyformis DSM 19594 hypothetical protein YP_004656025.1 2873028 R 761193 CDS YP_004656026.1 338211973 10871021 complement(2873999..2875198) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1343); COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR011547; KEGG: sli:Slin_5026 sulfate transporter; PFAM: Sulphate transporter; SPTR: Sulphate transporter; hypothetical protein 2875198 10871021 Runsl_2490 Runella slithyformis DSM 19594 hypothetical protein YP_004656026.1 2873999 R 761193 CDS YP_004656027.1 338211974 10871022 2875366..2876988 1 NC_015703.1 PFAM: Sulfate transporter family; InterPro IPR005067; KEGG: sli:Slin_4583 acyl-(acyl-carrier-protein) desaturase; PFAM: Fatty acid desaturase, type 2; PRIAM: Acyl-[acyl-carrier-protein] desaturase; SPTR: Acyl-(Acyl-carrier-protein) desaturase; sulfate transporter 2876988 10871022 Runsl_2491 Runella slithyformis DSM 19594 sulfate transporter YP_004656027.1 2875366 D 761193 CDS YP_004656028.1 338211975 10871023 complement(2877107..2878090) 1 NC_015703.1 PFAM: Fatty acid desaturase; COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: sli:Slin_4584 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; acyl-ACP desaturase 2878090 10871023 Runsl_2492 Runella slithyformis DSM 19594 acyl-ACP desaturase YP_004656028.1 2877107 R 761193 CDS YP_004656029.1 338211976 10871024 2878232..2878972 1 NC_015703.1 PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; phospholipid/glycerol acyltransferase 2878972 10871024 Runsl_2493 Runella slithyformis DSM 19594 phospholipid/glycerol acyltransferase YP_004656029.1 2878232 D 761193 CDS YP_004656030.1 338211977 10871025 2879153..2879479 1 NC_015703.1 COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR011547; KEGG: dfe:Dfer_2931 sulphate transporter; PFAM: Sulphate transporter; SPTR: Sulphate transporter; hypothetical protein 2879479 10871025 Runsl_2494 Runella slithyformis DSM 19594 hypothetical protein YP_004656030.1 2879153 D 761193 CDS YP_004656031.1 338211978 10871026 2879690..2881243 1 NC_015703.1 PFAM: Sulfate transporter family; COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR011547; KEGG: rbi:RB2501_07590 sulfate transporter; PFAM: Sulphate transporter; SPTR: Sulfate transporter family protein; sulfate transporter 2881243 10871026 Runsl_2495 Runella slithyformis DSM 19594 sulfate transporter YP_004656031.1 2879690 D 761193 CDS YP_004656032.1 338211979 10871027 2881306..2882880 1 NC_015703.1 PFAM: Sulfate transporter family; COGs: COG0288 Carbonic anhydrase; InterPro IPR001765; KEGG: dfe:Dfer_4665 carbonate dehydratase; PFAM: Carbonic anhydrase; PRIAM: Carbonate dehydratase; SPTR: Carbonic anhydrase; sulfate transporter 2882880 10871027 Runsl_2496 Runella slithyformis DSM 19594 sulfate transporter YP_004656032.1 2881306 D 761193 CDS YP_004656033.1 338211980 10871028 2882846..2883523 1 NC_015703.1 PFAM: Carbonic anhydrase; KEGG: rbi:RB2501_00501 membrane associated hydrolase; SPTR: membrane associated hydrolase; carbonate dehydratase 2883523 10871028 Runsl_2497 Runella slithyformis DSM 19594 carbonate dehydratase YP_004656033.1 2882846 D 761193 CDS YP_004656034.1 338211981 10871029 complement(2883574..2885922) 1 NC_015703.1 PFAM: Domain of unknown function (DUF1083); InterPro IPR013740; KEGG: sli:Slin_4427 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Redoxin; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; membrane associated hydrolase 2885922 10871029 Runsl_2498 Runella slithyformis DSM 19594 membrane associated hydrolase YP_004656034.1 2883574 R 761193 CDS YP_004656035.1 338211982 10871030 2886044..2887267 1 NC_015703.1 PFAM: AhpC/TSA family; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: bba:Bd2163 sugar transport protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Sugar transport protein; redoxin domain-containing protein 2887267 10871030 Runsl_2499 Runella slithyformis DSM 19594 redoxin domain-containing protein YP_004656035.1 2886044 D 761193 CDS YP_004656036.1 338211983 10871031 2887350..2888570 1 NC_015703.1 PFAM: Major Facilitator Superfamily; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: dfe:Dfer_4727 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; major facilitator superfamily protein 2888570 10871031 Runsl_2500 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004656036.1 2887350 D 761193 CDS YP_004656037.1 338211984 10871032 complement(2888715..2890148) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG1457 Purine-cytosine permease and related protein; KEGG: rmr:Rmar_0690 transmembrane prediction; SPTR: nucleoside transport protein; oxidoreductase domain-containing protein 2890148 10871032 Runsl_2501 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004656037.1 2888715 R 761193 CDS YP_004656038.1 338211985 10871033 2890370..2891749 1 NC_015703.1 transmembrane prediction 2891749 10871033 Runsl_2502 Runella slithyformis DSM 19594 transmembrane prediction YP_004656038.1 2890370 D 761193 CDS YP_004656039.1 338211986 10871034 2891755..2891919 1 NC_015703.1 InterPro IPR010476; KEGG: cpi:Cpin_4926 rhamnose-proton symporter; PFAM: RhaT l-rhamnose-proton symport 2; SPTR: RhaT l-rhamnose-proton symport 2; hypothetical protein 2891919 10871034 Runsl_2503 Runella slithyformis DSM 19594 hypothetical protein YP_004656039.1 2891755 D 761193 CDS YP_004656040.1 338211987 10871035 2892004..2893056 1 NC_015703.1 PFAM: L-rhamnose-proton symport protein (RhaT); COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: sli:Slin_6496 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; RhaT l-rhamnose-proton symport 2 2893056 10871035 Runsl_2504 Runella slithyformis DSM 19594 RhaT l-rhamnose-proton symport 2 YP_004656040.1 2892004 D 761193 CDS YP_004656041.1 338211988 10871036 complement(2893147..2893773) 1 NC_015703.1 PFAM: ABC transporter; InterPro IPR006311:IPR012307; KEGG: dfe:Dfer_4958 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; ABC transporter 2893773 10871036 Runsl_2505 Runella slithyformis DSM 19594 ABC transporter YP_004656041.1 2893147 R 761193 CDS YP_004656042.1 338211989 10871037 complement(2893850..2894779) 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: dfe:Dfer_3708 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein 2894779 10871037 Runsl_2506 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004656042.1 2893850 R 761193 CDS YP_004656043.1 338211990 10871038 complement(2894823..2895680) 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG1200 RecG-like helicase; InterProIPR004609:IPR004365:IPR011545:IPR001650:IPR 014001; KEGG: dfe:Dfer_4892 ATP-dependent DNA helicase RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent DNA helicase RecG; TIGRFAM: DNA helicase, ATP-dependent, RecG; xylose isomerase domain-containing protein 2895680 10871038 Runsl_2507 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004656043.1 2894823 R 761193 CDS YP_004656044.1 338211991 10871039 2895863..2897974 1 NC_015703.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecG; InterPro IPR011462; KEGG: ppn:Palpr_2869 hypothetical protein; SPTR: uncharacterized protein; ATP-dependent DNA helicase RecG 2897974 10871039 Runsl_2508 Runella slithyformis DSM 19594 ATP-dependent DNA helicase RecG YP_004656044.1 2895863 D 761193 CDS YP_004656045.1 338211992 10871040 2898231..2898821 1 NC_015703.1 PFAM: Transposase IS200 like; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: dfe:Dfer_3788 UvrD/REP helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: UvrD/REP helicase; hypothetical protein 2898821 10871040 Runsl_2509 Runella slithyformis DSM 19594 hypothetical protein YP_004656045.1 2898231 D 761193 CDS YP_004656046.1 338211993 10871041 2899056..2901389 1 NC_015703.1 PFAM: UvrD/REP helicase; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: dfe:Dfer_4308 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; UvrD/REP helicase 2901389 10871041 Runsl_2510 Runella slithyformis DSM 19594 UvrD/REP helicase YP_004656046.1 2899056 D 761193 CDS YP_004656047.1 338211994 10871042 2901426..2901998 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); COGs: COG0632 Holliday junction resolvasome DNA-binding subunit; HAMAP: Holliday junction ATP-dependent DNA helicase ruvA; InterPro IPR000085:IPR013849:IPR011114; KEGG: dfe:Dfer_4464 Holliday junction DNA helicase RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal; SPTR: Holliday junction ATP-dependent DNA helicase ruvA; TIGRFAM: Bacterial DNA recombination protein RuvA; hypothetical protein 2901998 10871042 Runsl_2511 Runella slithyformis DSM 19594 hypothetical protein YP_004656047.1 2901426 D 761193 CDS YP_004656048.1 338211995 10871043 complement(2902022..2902630) 1 NC_015703.1 PFAM: RuvA, C-terminal domain; RuvA N terminal domain; TIGRFAM: Holliday junction DNA helicase, RuvA subunit; InterPro IPR013097; KEGG: dfe:Dfer_3797 stress responsive alpha-beta barrel domain protein; PFAM: Stress responsive alpha-beta barrel; SPTR: Stress responsive alpha-beta barrel domain protein; Holliday junction DNA helicase subunit RuvA 2902630 10871043 Runsl_2512 Runella slithyformis DSM 19594 Holliday junction DNA helicase subunit RuvA YP_004656048.1 2902022 R 761193 CDS YP_004656049.1 338211996 10871044 complement(2902691..2903065) 1 NC_015703.1 PFAM: Stress responsive A/B Barrel Domain; KEGG: dfe:Dfer_3796 hypothetical protein; SPTR: uncharacterized protein; stress responsive alpha-beta barrel domain-containing protein 2903065 10871044 Runsl_2513 Runella slithyformis DSM 19594 stress responsive alpha-beta barrel domain-containing protein YP_004656049.1 2902691 R 761193 CDS YP_004656050.1 338211997 10871045 complement(2903108..2903308) 1 NC_015703.1 KEGG: ran:Riean_1311 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2903308 10871045 Runsl_2514 Runella slithyformis DSM 19594 hypothetical protein YP_004656050.1 2903108 R 761193 CDS YP_004656051.1 338211998 10871046 complement(2903382..2904248) 1 NC_015703.1 InterPro IPR018750; KEGG: cpi:Cpin_0833 hypothetical protein; PFAM: Protein of unknown function DUF2306, membrane; SPTR: uncharacterized protein; hypothetical protein 2904248 10871046 Runsl_2515 Runella slithyformis DSM 19594 hypothetical protein YP_004656051.1 2903382 R 761193 CDS YP_004656052.1 338211999 10871047 complement(2904296..2904964) 1 NC_015703.1 PFAM: Predicted membrane protein (DUF2306); COGs: COG0133 Tryptophan synthase beta chain; HAMAP: Tryptophan synthase beta chain; InterPro IPR006654:IPR001926; KEGG: lby:Lbys_2384 tryptophan synthase, beta chain; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Tryptophan synthase; SPTR: Tryptophan synthase beta chain; TIGRFAM: Tryptophan synthase, beta chain; hypothetical protein 2904964 10871047 Runsl_2516 Runella slithyformis DSM 19594 hypothetical protein YP_004656052.1 2904296 R 761193 CDS YP_004656053.1 338212000 10871048 complement(2904969..2906216) 1 NC_015703.1 PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: tryptophan synthase, beta subunit; COGs: COG0135 Phosphoribosylanthranilate isomerase; InterPro IPR001240; KEGG: dfe:Dfer_3794 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); PRIAM: Phosphoribosylanthranilate isomerase; SPTR: Phosphoribosylanthranilate isomerase; tryptophan synthase subunit beta 2906216 10871048 Runsl_2517 Runella slithyformis DSM 19594 tryptophan synthase subunit beta YP_004656053.1 2904969 R 761193 CDS YP_004656054.1 338212001 10871049 complement(2906226..2906876) 1 NC_015703.1 PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; COGs: COG0134 Indole-3-glycerol phosphate synthase; InterPro IPR013798; KEGG: dfe:Dfer_3793 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; PRIAM: Indole-3-glycerol-phosphate synthase; SPTR: Indole-3-glycerol phosphate synthase; phosphoribosylanthranilate isomerase 2906876 10871049 Runsl_2518 Runella slithyformis DSM 19594 phosphoribosylanthranilate isomerase YP_004656054.1 2906226 R 761193 CDS YP_004656055.1 338212002 10871050 complement(2906894..2907697) 1 NC_015703.1 PFAM: Indole-3-glycerol phosphate synthase; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: dfe:Dfer_4673 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; indole-3-glycerol phosphate synthase 2907697 10871050 Runsl_2519 Runella slithyformis DSM 19594 indole-3-glycerol phosphate synthase YP_004656055.1 2906894 R 761193 CDS YP_004656056.1 338212003 10871051 complement(2907697..2908296) 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); COGs: COG0547 Anthranilate phosphoribosyltransferase; HAMAP: Anthranilate phosphoribosyl transferase; InterPro IPR005940:IPR017459:IPR000312; KEGG: dfe:Dfer_3792 anthranilate phosphoribosyltransferase; PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; PRIAM: Anthranilate phosphoribosyltransferase; SPTR: Anthranilate phosphoribosyltransferase; TIGRFAM: Anthranilate phosphoribosyl transferase; hypothetical protein 2908296 10871051 Runsl_2520 Runella slithyformis DSM 19594 hypothetical protein YP_004656056.1 2907697 R 761193 CDS YP_004656057.1 338212004 10871052 complement(2908298..2909287) 1 NC_015703.1 PFAM: Glycosyl transferase, a/b domain; Glycosyl transferase, helical bundle domain; TIGRFAM: anthranilate phosphoribosyltransferase; COGs: COG0181 Porphobilinogen deaminase; HAMAP: Porphobilinogen deaminase; InterPro IPR000860; KEGG: dfe:Dfer_3276 porphobilinogen deaminase; PFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; SPTR: Porphobilinogen deaminase; TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; anthranilate phosphoribosyltransferase 2909287 10871052 Runsl_2521 Runella slithyformis DSM 19594 anthranilate phosphoribosyltransferase YP_004656057.1 2908298 R 761193 CDS YP_004656058.1 338212005 10871053 complement(2909308..2910231) 1 NC_015703.1 PFAM: Porphobilinogen deaminase, C-terminal domain; Porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase; InterPro IPR014968; KEGG: sli:Slin_1546 XisI protein; PFAM: XisI protein; SPTR: XisI protein; porphobilinogen deaminase 2910231 10871053 Runsl_2522 Runella slithyformis DSM 19594 porphobilinogen deaminase YP_004656058.1 2909308 R 761193 CDS YP_004656059.1 338212006 10871054 complement(2910264..2910602) 1 NC_015703.1 PFAM: XisI protein; COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR011611; KEGG: sli:Slin_6505 PfkB domain protein; PFAM: Carbohydrate/purine kinase; SPTR: PfkB domain protein; XisI protein 2910602 10871054 Runsl_2523 Runella slithyformis DSM 19594 XisI protein YP_004656059.1 2910264 R 761193 CDS YP_004656060.1 338212007 10871055 complement(2910658..2911641) 1 NC_015703.1 PFAM: pfkB family carbohydrate kinase; TIGRFAM: rfaE bifunctional protein, domain I; COGs: COG0512 Anthranilate/para-aminobenzoate synthase component II; InterPro IPR006221:IPR000991; KEGG: dfe:Dfer_3791 glutamine amidotransferase of anthranilate synthase; PFAM: Glutamine amidotransferase class-I, C-terminal; PRIAM: Anthranilate synthase; SPTR: Glutamine amidotransferase of anthranilate synthase; TIGRFAM: Glutamine amidotransferase of anthranilate synthase; PfkB domain-containing protein 2911641 10871055 Runsl_2524 Runella slithyformis DSM 19594 PfkB domain-containing protein YP_004656060.1 2910658 R 761193 CDS YP_004656061.1 338212008 10871056 complement(2911714..2912280) 1 NC_015703.1 PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase; COGs: COG1803 Methylglyoxal synthase; HAMAP: Methylglyoxal synthase; InterPro IPR004363:IPR011607; KEGG: lby:Lbys_1178 methylglyoxal synthase; PFAM: MGS-like; PRIAM: Methylglyoxal synthase; SPTR: Methylglyoxal synthase; TIGRFAM: Methylglyoxal synthase; glutamine amidotransferase of anthranilate synthase 2912280 10871056 Runsl_2525 Runella slithyformis DSM 19594 glutamine amidotransferase of anthranilate synthase YP_004656061.1 2911714 R 761193 CDS YP_004656062.1 338212009 10871057 complement(2912325..2912774) 1 NC_015703.1 PFAM: MGS-like domain; TIGRFAM: methylglyoxal synthase; COGs: COG0171 NAD synthase; InterPro IPR003694:IPR003010; KEGG: dfe:Dfer_2832 NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase; PRIAM: NAD(+) synthase (glutamine-hydrolyzing); SPTR: NAD+ synthetase; TIGRFAM: NAD+ synthase; methylglyoxal synthase 2912774 10871057 Runsl_2526 Runella slithyformis DSM 19594 methylglyoxal synthase YP_004656062.1 2912325 R 761193 CDS YP_004656063.1 338212010 10871058 complement(2912839..2914863) 1 NC_015703.1 PFAM: NAD synthase; Carbon-nitrogen hydrolase; TIGRFAM: NAD+ synthetase; KEGG: sru:SRU_0224 colanic acid biosynthesis glycosyl transferase; SPTR: colanic acid biosynthesis glycosyl transferase; NAD+ synthetase 2914863 10871058 Runsl_2527 Runella slithyformis DSM 19594 NAD+ synthetase YP_004656063.1 2912839 R 761193 CDS YP_004656064.1 338212011 10871059 complement(2915019..2916203) 1 NC_015703.1 hypothetical protein 2916203 10871059 Runsl_2528 Runella slithyformis DSM 19594 hypothetical protein YP_004656064.1 2915019 R 761193 CDS YP_004656065.1 338212012 10871060 complement(2916324..2916725) 1 NC_015703.1 PFAM: AhpC/TSA family; InterPro IPR012910:IPR000531; KEGG: sli:Slin_4222 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein 2916725 10871060 Runsl_2529 Runella slithyformis DSM 19594 hypothetical protein YP_004656065.1 2916324 R 761193 CDS YP_004656066.1 338212013 10871061 2916921..2919971 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: sli:Slin_4221 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 2919971 10871061 Runsl_2530 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004656066.1 2916921 D 761193 CDS YP_004656067.1 338212014 10871062 2920010..2921422 1 NC_015703.1 PFAM: SusD family; KEGG: sli:Slin_4220 hypothetical protein; SPTR: uncharacterized protein; RagB/SusD domain-containing protein 2921422 10871062 Runsl_2531 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004656067.1 2920010 D 761193 CDS YP_004656068.1 338212015 10871063 2921485..2922357 1 NC_015703.1 KEGG: sli:Slin_4219 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2922357 10871063 Runsl_2532 Runella slithyformis DSM 19594 hypothetical protein YP_004656068.1 2921485 D 761193 CDS YP_004656069.1 338212016 10871064 2922401..2922892 1 NC_015703.1 COGs: COG3291 FOG: PKD repeat; InterPro IPR000601; KEGG: sli:Slin_4218 PKD domain containing protein; PFAM: PKD; SMART: PKD; SPTR: PKD domain containing protein; hypothetical protein 2922892 10871064 Runsl_2533 Runella slithyformis DSM 19594 hypothetical protein YP_004656069.1 2922401 D 761193 CDS YP_004656070.1 338212017 10871065 2922894..2925272 1 NC_015703.1 PFAM: Pregnancy-associated plasma protein-A; PKD domain; COGs: COG0155 Sulfite reductase beta subunit (hemoprotein); InterPro IPR005117:IPR006067:IPR007842; KEGG: sli:Slin_2051 sulfite reductase (ferredoxin); PFAM: Nitrite/sulphite reductase 4Fe-4S region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; HEPN; PRIAM: Ferredoxin--nitrite reductase; SPTR: Sulfite reductase (Ferredoxin); PKD domain-containing protein 2925272 10871065 Runsl_2534 Runella slithyformis DSM 19594 PKD domain-containing protein YP_004656070.1 2922894 D 761193 CDS YP_004656071.1 338212018 10871066 2925532..2927703 1 NC_015703.1 PFAM: HEPN domain; Nitrite and sulphite reductase 4Fe-4S domain; Nitrite/Sulfite reductase ferredoxin-like half domain; COGs: COG0007 Uroporphyrinogen-III methylase; InterPro IPR006366:IPR000878; KEGG: dfe:Dfer_2619 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase; PRIAM: Uroporphyrinogen-III C-methyltransferase; SPTR: Uroporphyrin-III C-methyltransferase; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; ferredoxin--nitrite reductase 2927703 10871066 Runsl_2535 Runella slithyformis DSM 19594 ferredoxin--nitrite reductase YP_004656071.1 2925532 D 761193 CDS YP_004656072.1 338212019 10871067 2927717..2928460 1 NC_015703.1 PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase; COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2; InterPro IPR000594:IPR007901:IPR001763; KEGG: rxy:Rxyl_0743 UBA/ThiF-type NAD/FAD binding fold; PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; SMART: Rhodanese-like; SPTR: Molybdopterin biosynthesis protein; uroporphyrin-III C-methyltransferase 2928460 10871067 Runsl_2536 Runella slithyformis DSM 19594 uroporphyrin-III C-methyltransferase YP_004656072.1 2927717 D 761193 CDS YP_004656073.1 338212020 10871068 2928646..2929731 1 NC_015703.1 PFAM: MoeZ/MoeB domain; Rhodanese-like domain; ThiF family; COGs: COG4121 conserved hypothetical protein; InterPro IPR008471; KEGG: sli:Slin_4488 hypothetical protein; PFAM: Protein of unknown function DUF752; SPTR: uncharacterized protein; UBA/THIF-type NAD/FAD binding protein 2929731 10871068 Runsl_2537 Runella slithyformis DSM 19594 UBA/THIF-type NAD/FAD binding protein YP_004656073.1 2928646 D 761193 CDS YP_004656074.1 338212021 10871069 2929735..2930430 1 NC_015703.1 PFAM: Protein of unknown function (DUF752); KEGG: aex:Astex_3689 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2930430 10871069 Runsl_2538 Runella slithyformis DSM 19594 hypothetical protein YP_004656074.1 2929735 D 761193 CDS YP_004656075.1 338212022 10871070 2930487..2931152 1 NC_015703.1 hypothetical protein 2931152 10871070 Runsl_2539 Runella slithyformis DSM 19594 hypothetical protein YP_004656075.1 2930487 D 761193 CDS YP_004656076.1 338212023 10871071 complement(2931188..2931679) 1 NC_015703.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_1972 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; hypothetical protein 2931679 10871071 Runsl_2540 Runella slithyformis DSM 19594 hypothetical protein YP_004656076.1 2931188 R 761193 CDS YP_004656077.1 338212024 10871072 complement(2931722..2932486) 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076:IPR017941; KEGG: dfe:Dfer_2187 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] iron-sulphur domain; SPTR: FAD dependent oxidoreductase; 3-oxoacyl-ACP reductase 2932486 10871072 Runsl_2541 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004656077.1 2931722 R 761193 CDS YP_004656078.1 338212025 10871073 complement(2932533..2934158) 1 NC_015703.1 PFAM: Rieske [2Fe-2S] domain; FAD dependent oxidoreductase; Prodigal; manually curated; FAD dependent oxidoreductase 2934158 10871073 Runsl_2542 Runella slithyformis DSM 19594 FAD dependent oxidoreductase YP_004656078.1 2932533 R 761193 CDS YP_004656079.1 338212026 10871077 complement(2936503..2937534) 1 NC_015703.1 PFAM: Acyl-protein synthetase, LuxE; KEGG: sli:Slin_3617 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2937534 10871077 Runsl_2546 Runella slithyformis DSM 19594 hypothetical protein YP_004656079.1 2936503 R 761193 CDS YP_004656080.1 338212027 10871078 2937577..2938098 1 NC_015703.1 KEGG: sli:Slin_5308 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2938098 10871078 Runsl_2547 Runella slithyformis DSM 19594 hypothetical protein YP_004656080.1 2937577 D 761193 CDS YP_004656081.1 338212028 10871079 2938168..2939112 1 NC_015703.1 hypothetical protein 2939112 10871079 Runsl_2548 Runella slithyformis DSM 19594 hypothetical protein YP_004656081.1 2938168 D 761193 CDS YP_004656082.1 338212029 10871080 2939112..2939231 1 NC_015703.1 KEGG: sli:Slin_5950 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2939231 10871080 Runsl_2549 Runella slithyformis DSM 19594 hypothetical protein YP_004656082.1 2939112 D 761193 CDS YP_004656083.1 338212030 10871081 complement(2939175..2940347) 1 NC_015703.1 KEGG: sli:Slin_5949 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2940347 10871081 Runsl_2550 Runella slithyformis DSM 19594 hypothetical protein YP_004656083.1 2939175 R 761193 CDS YP_004656084.1 338212031 10871082 complement(2940466..2943828) 1 NC_015703.1 PFAM: Peptidase C25; KEGG: sli:Slin_5948 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2943828 10871082 Runsl_2551 Runella slithyformis DSM 19594 hypothetical protein YP_004656084.1 2940466 R 761193 CDS YP_004656085.1 338212032 10871083 complement(2943970..2944617) 1 NC_015703.1 PFAM: SprT-like family; KEGG: sli:Slin_2296 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2944617 10871083 Runsl_2552 Runella slithyformis DSM 19594 hypothetical protein YP_004656085.1 2943970 R 761193 CDS YP_004656086.1 338212033 10871084 2945008..2945484 1 NC_015703.1 COGs: COG0740 Protease subunit of ATP-dependent Clp protease; HAMAP: ATP-dependent Clp protease proteolytic subunit; InterPro IPR001907; KEGG: dfe:Dfer_4574 endopeptidase Clp; PFAM: Peptidase S14, ClpP; PRIAM: Endopeptidase Clp; SPTR: ATP-dependent Clp protease proteolytic subunit; hypothetical protein 2945484 10871084 Runsl_2553 Runella slithyformis DSM 19594 hypothetical protein YP_004656086.1 2945008 D 761193 CDS YP_004656087.1 338212034 10871085 2945858..2946532 1 NC_015703.1 PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; COGs: COG1293 RNA-binding protein homologous to eukaryotic snRNP; InterPro IPR008616:IPR008532; KEGG: sli:Slin_0279 hypothetical protein; PFAM: Protein of unknown function DUF814; Fibronectin-binding A, N-terminal; SPTR: uncharacterized protein; ATP-dependent Clp protease proteolytic subunit 2946532 10871085 Runsl_2554 Runella slithyformis DSM 19594 ATP-dependent Clp protease proteolytic subunit YP_004656087.1 2945858 D 761193 CDS YP_004656088.1 338212035 10871086 2946642..2948249 1 NC_015703.1 PFAM: Domain of unknown function (DUF814); Fibronectin-binding protein A N-terminus (FbpA); COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: dfe:Dfer_2601 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; hypothetical protein 2948249 10871086 Runsl_2555 Runella slithyformis DSM 19594 hypothetical protein YP_004656088.1 2946642 D 761193 CDS YP_004656089.1 338212036 10871087 complement(2948236..2949396) 1 NC_015703.1 PFAM: Bacterial regulatory proteins, lacI family; family; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: fbc:FB2170_09056 NADH-dependent dihydrogenase; PFAM: Oxidoreductase, N-terminal; SPTR: NADH-dependent dehydrogenase; LacI family transcriptional regulator 2949396 10871087 Runsl_2556 Runella slithyformis DSM 19594 LacI family transcriptional regulator YP_004656089.1 2948236 R 761193 CDS YP_004656090.1 338212037 10871088 2949782..2951188 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; oxidoreductase domain-containing protein 2951188 10871088 Runsl_2557 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004656090.1 2949782 D 761193 CDS YP_004656091.1 338212038 10871089 complement(2951161..2951280) 1 NC_015703.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311; KEGG: dfe:Dfer_0267 oxidoreductase domain protein; SPTR: Oxidoreductase domain protein; hypothetical protein 2951280 10871089 Runsl_2558 Runella slithyformis DSM 19594 hypothetical protein YP_004656091.1 2951161 R 761193 CDS YP_004656092.1 338212039 10871090 2951321..2952487 1 NC_015703.1 KEGG: psl:Psta_2085 hypothetical protein; SPTR: uncharacterized protein; oxidoreductase domain-containing protein 2952487 10871090 Runsl_2559 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004656092.1 2951321 D 761193 CDS YP_004656093.1 338212040 10871091 2952640..2953536 1 NC_015703.1 COGs: COG1312 D-mannonate dehydratase; HAMAP: Mannonate dehydratase; InterPro IPR004628; KEGG: sli:Slin_6196 mannonate dehydratase; PFAM: Mannonate dehydratase; PRIAM: Mannonate dehydratase; SPTR: Mannonate dehydratase 2; TIGRFAM: Mannonate dehydratase; hypothetical protein 2953536 10871091 Runsl_2560 Runella slithyformis DSM 19594 hypothetical protein YP_004656093.1 2952640 D 761193 CDS YP_004656094.1 338212041 10871092 2953626..2954837 1 NC_015703.1 PFAM: D-mannonate dehydratase (UxuA); TIGRFAM: mannonate dehydratase; KEGG: lby:Lbys_0121 hypothetical protein; SPTR: uncharacterized protein; mannonate dehydratase 2954837 10871092 Runsl_2561 Runella slithyformis DSM 19594 mannonate dehydratase YP_004656094.1 2953626 D 761193 CDS YP_004656095.1 338212042 10871093 2954907..2955347 1 NC_015703.1 PFAM: Transposase IS200 like; COGs: COG3661 Alpha-glucuronidase; InterPro IPR005154:IPR011100:IPR011099; KEGG: sli:Slin_6197 alpha-glucuronidase; PFAM: Glycosyl hydrolase 67 middle; Glycoside hydrolase 67; Glycosyl hydrolase 67, C-terminal; PRIAM: Alpha-glucuronidase; SPTR: Alpha-glucuronidase; hypothetical protein 2955347 10871093 Runsl_2562 Runella slithyformis DSM 19594 hypothetical protein YP_004656095.1 2954907 D 761193 CDS YP_004656096.1 338212043 10871094 2955539..2957632 1 NC_015703.1 PFAM: Glycosyl hydrolase 67 C-terminus; Glycosyl hydrolase 67 middle domain; Glycosyl hydrolase 67 N-terminus; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_6198 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; alpha-glucuronidase 2957632 10871094 Runsl_2563 Runella slithyformis DSM 19594 alpha-glucuronidase YP_004656096.1 2955539 D 761193 CDS YP_004656097.1 338212044 10871095 2957629..2958432 1 NC_015703.1 PFAM: short chain dehydrogenase; InterPro IPR013740; KEGG: sli:Slin_1863 redoxin; PFAM: Redoxin; SPTR: Redoxin domain protein; 3-oxoacyl-ACP reductase 2958432 10871095 Runsl_2564 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004656097.1 2957629 D 761193 CDS YP_004656098.1 338212045 10871096 2958507..2959781 1 NC_015703.1 PFAM: Redoxin; KEGG: cpi:Cpin_2806 hypothetical protein; SPTR: WD40 domain protein beta Propeller; redoxin domain-containing protein 2959781 10871096 Runsl_2565 Runella slithyformis DSM 19594 redoxin domain-containing protein YP_004656098.1 2958507 D 761193 CDS YP_004656099.1 338212046 10871097 2959809..2960438 1 NC_015703.1 KEGG: ppn:Palpr_0675 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2960438 10871097 Runsl_2566 Runella slithyformis DSM 19594 hypothetical protein YP_004656099.1 2959809 D 761193 CDS YP_004656100.1 338212047 10871098 2960591..2962129 1 NC_015703.1 COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR006311:IPR001466; KEGG: sli:Slin_2368 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; hypothetical protein 2962129 10871098 Runsl_2567 Runella slithyformis DSM 19594 hypothetical protein YP_004656100.1 2960591 D 761193 CDS YP_004656101.1 338212048 10871099 2962372..2963925 1 NC_015703.1 PFAM: Beta-lactamase; InterPro IPR013096; KEGG: sli:Slin_3322 cupin; PFAM: Cupin 2, conserved barrel; SPTR: Cupin 2 conserved barrel domain protein; beta-lactamase 2963925 10871099 Runsl_2568 Runella slithyformis DSM 19594 beta-lactamase YP_004656101.1 2962372 D 761193 CDS YP_004656102.1 338212049 10871100 2963952..2964743 1 NC_015703.1 PFAM: Cupin domain; COGs: COG2730 Endoglucanase; InterPro IPR006311:IPR001547; KEGG: sli:Slin_3338 glycoside hydrolase 5; PFAM: Glycoside hydrolase, family 5; SPTR: Glycoside hydrolase 5; cupin 2964743 10871100 Runsl_2569 Runella slithyformis DSM 19594 cupin YP_004656102.1 2963952 D 761193 CDS YP_004656103.1 338212050 10871101 2964905..2966047 1 NC_015703.1 PFAM: Cellulase (glycosyl hydrolase 5); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; InterPro IPR013737:IPR008902; KEGG: sli:Slin_1249 alpha-L-rhamnosidase; PFAM: Bacterial alpha-L-rhamnosidase; Bacterial alpha-L-rhamnosidase N-terminal; SPTR: Alpha-L-rhamnosidase; glycoside hydrolase 2966047 10871101 Runsl_2570 Runella slithyformis DSM 19594 glycoside hydrolase YP_004656103.1 2964905 D 761193 CDS YP_004656104.1 338212051 10871102 2966210..2969053 1 NC_015703.1 PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain; COGs: COG2273 Beta-glucanase/Beta-glucan synthetase; InterPro IPR000757; KEGG: plu:plu3518 hypothetical protein; PFAM: Glycoside hydrolase, family 16; SPTR: Glycoside hydrolase 16; alpha-L-rhamnosidase 2969053 10871102 Runsl_2571 Runella slithyformis DSM 19594 alpha-L-rhamnosidase YP_004656104.1 2966210 D 761193 CDS YP_004656105.1 338212052 10871103 2969232..2970017 1 NC_015703.1 PFAM: Glycosyl hydrolases family 16; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: fbc:FB2170_05940 sulfatase; PFAM: Sulfatase; SPTR: sulfatase; glycoside hydrolase 2970017 10871103 Runsl_2572 Runella slithyformis DSM 19594 glycoside hydrolase YP_004656105.1 2969232 D 761193 CDS YP_004656106.1 338212053 10871104 2970020..2971606 1 NC_015703.1 PFAM: Sulfatase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917:IPR008902; KEGG: phe:Phep_3974 alpha-L-rhamnosidase; PFAM: Bacterial alpha-L-rhamnosidase; Sulfatase; PRIAM: Arylsulfatase; SPTR: Mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase); sulfatase 2971606 10871104 Runsl_2573 Runella slithyformis DSM 19594 sulfatase YP_004656106.1 2970020 D 761193 CDS YP_004656109.1 338212054 10871107 2976339..2976452 1 NC_015703.1 InterPro IPR014922; KEGG: kko:Kkor_1113 hypothetical protein; PFAM: Protein of unknown function DUF1801; SPTR: uncharacterized protein; hypothetical protein 2976452 10871107 Runsl_2576 Runella slithyformis DSM 19594 hypothetical protein YP_004656109.1 2976339 D 761193 CDS YP_004656110.1 338212055 10871108 2976565..2976981 1 NC_015703.1 PFAM: Domain of unknown function (DU1801); COGs: COG3938 Proline racemase; InterPro IPR008794; KEGG: cpi:Cpin_5572 hydroxyproline-2-epimerase; PFAM: Proline racemase; PRIAM: 4-hydroxyproline epimerase; SPTR: Proline racemase; hypothetical protein 2976981 10871108 Runsl_2577 Runella slithyformis DSM 19594 hypothetical protein YP_004656110.1 2976565 D 761193 CDS YP_004656111.1 338212056 10871109 2977037..2978041 1 NC_015703.1 PFAM: Proline racemase; KEGG: pca:Pcar_0295 restriction endonuclease; SPTR: uncharacterized protein; 4-hydroxyproline epimerase 2978041 10871109 Runsl_2578 Runella slithyformis DSM 19594 4-hydroxyproline epimerase YP_004656111.1 2977037 D 761193 CDS YP_004656112.1 338212057 10871110 2978068..2978499 1 NC_015703.1 restriction endonuclease 2978499 10871110 Runsl_2579 Runella slithyformis DSM 19594 restriction endonuclease YP_004656112.1 2978068 D 761193 CDS YP_004656113.1 338212058 10871111 2978990..2979313 1 NC_015703.1 KEGG: shg:Sph21_3755 rubredoxin-type Fe(Cys)4 protein; SPTR: Rubredoxin; hypothetical protein 2979313 10871111 Runsl_2580 Runella slithyformis DSM 19594 hypothetical protein YP_004656113.1 2978990 D 761193 CDS YP_004656114.1 338212059 10871112 complement(2979882..2981261) 1 NC_015703.1 COGs: COG3383 Uncharacterized anaerobic dehydrogenase; InterProIPR006963:IPR006656:IPR006657:IPR013027:IPR 007419; KEGG: dfe:Dfer_2062 molybdopterin oxidoreductase; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding region; PRIAM: Nitrate reductase., Nitrite reductase (NAD(P)H); SPTR: Molybdopterin oxidoreductase; rubredoxin-type Fe(Cys)4 protein 2981261 10871112 Runsl_2581 Runella slithyformis DSM 19594 rubredoxin-type Fe(Cys)4 protein YP_004656114.1 2979882 R 761193 CDS YP_004656115.1 338212060 10871113 complement(2981440..2984970) 1 NC_015703.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; BFD-like [2Fe-2S] binding domain; Molybdopterin oxidoreductase Fe4S4 domain; COGs: COG2223 Nitrate/nitrite transporter; InterPro IPR011701; KEGG: sli:Slin_5402 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; nitrate reductase/nitrite reductase 2984970 10871113 Runsl_2582 Runella slithyformis DSM 19594 nitrate reductase/nitrite reductase YP_004656115.1 2981440 R 761193 CDS YP_004656116.1 338212061 10871114 complement(2985002..2986297) 1 NC_015703.1 PFAM: Major Facilitator Superfamily; TIGRFAM: nitrite extrusion protein (nitrite facilitator); KEGG: sli:Slin_5403 hypothetical protein; SPTR: uncharacterized protein; major facilitator superfamily protein 2986297 10871114 Runsl_2583 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004656116.1 2985002 R 761193 CDS YP_004656117.1 338212062 10871115 complement(2986327..2987862) 1 NC_015703.1 COGs: COG0547 Anthranilate phosphoribosyltransferase; KEGG: sli:Slin_5627 anthranilate phosphoribosyltransferase-like protein; SPTR: Anthranilate phosphoribosyltransferase-like protein; hypothetical protein 2987862 10871115 Runsl_2584 Runella slithyformis DSM 19594 hypothetical protein YP_004656117.1 2986327 R 761193 CDS YP_004656118.1 338212063 10871116 2988373..2989647 1 NC_015703.1 COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; HAMAP: tRNA-specific 2-thiouridylase; InterPro IPR004506:IPR018318; KEGG: dfe:Dfer_2662 tRNA-specific 2-thiouridylase MnmA; PFAM: tRNA methyl transferase-like; SPTR: tRNA-specific 2-thiouridylase mnmA; TIGRFAM: tRNA-specific 2-thiouridylase; anthranilate phosphoribosyltransferase-like protein 2989647 10871116 Runsl_2585 Runella slithyformis DSM 19594 anthranilate phosphoribosyltransferase-like protein YP_004656118.1 2988373 D 761193 CDS YP_004656119.1 338212064 10871117 complement(2989764..2990867) 1 NC_015703.1 PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: dfe:Dfer_2633 hypothetical protein; SPTR: uncharacterized protein; tRNA-specific 2-thiouridylase mnmA 2990867 10871117 Runsl_2586 Runella slithyformis DSM 19594 tRNA-specific 2-thiouridylase mnmA YP_004656119.1 2989764 R 761193 CDS YP_004656120.1 338212065 10871118 2991722..2992108 1 NC_015703.1 KEGG: sli:Slin_4775 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 2992108 10871118 Runsl_2587 Runella slithyformis DSM 19594 hypothetical protein YP_004656120.1 2991722 D 761193 CDS YP_004656121.1 338212066 10871119 2992144..2992536 1 NC_015703.1 PFAM: Protein of unknown function (DUF3244); COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: fbc:FB2170_14138 hypothetical protein; PFAM: Signal transduction histidine kinase, internal region; SPTR: membrane protein; hypothetical protein 2992536 10871119 Runsl_2588 Runella slithyformis DSM 19594 hypothetical protein YP_004656121.1 2992144 D 761193 CDS YP_004656122.1 338212067 10871120 2992574..2993731 1 NC_015703.1 PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_2868 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; signal transduction histidine kinase 2993731 10871120 Runsl_2589 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004656122.1 2992574 D 761193 CDS YP_004656123.1 338212068 10871121 2993771..2994526 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG2935 arginyl-tRNA:protein arginylyltransferase; InterPro IPR007472; KEGG: lby:Lbys_1323 arginine-tRNA-protein transferase domain protein; PFAM: Arginine-tRNA-protein transferase, C-terminal; SPTR: Arginine-tRNA-protein transferase domain protein; LytTR family two component transcriptional regulator 2994526 10871121 Runsl_2590 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004656123.1 2993771 D 761193 CDS YP_004656124.1 338212069 10871122 complement(2994530..2995612) 1 NC_015703.1 PFAM: Arginine-tRNA-protein transferase, C terminus; COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR006411:IPR000771; KEGG: sli:Slin_0254 fructose-bisphosphate aldolase, class II; PFAM: Ketose-bisphosphate aldolase, class-II; PRIAM: Fructose-bisphosphate aldolase; SPTR: Fructose-bisphosphate aldolase, class II; TIGRFAM: Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype; Ketose-bisphosphate aldolase, class-II; arginine-tRNA-protein transferase domain-containing protein 2995612 10871122 Runsl_2591 Runella slithyformis DSM 19594 arginine-tRNA-protein transferase domain-containing protein YP_004656124.1 2994530 R 761193 CDS YP_004656125.1 338212070 10871123 complement(2995703..2996782) 1 NC_015703.1 PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases; fructose-bisphosphate aldolase, class II, yeast/E. coli subtype; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650; KEGG: dfe:Dfer_3741 peptidase M20; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: Beta-Ala-His dipeptidase; SPTR: Peptidase M20; fructose-bisphosphate aldolase 2996782 10871123 Runsl_2592 Runella slithyformis DSM 19594 fructose-bisphosphate aldolase YP_004656125.1 2995703 R 761193 CDS YP_004656126.1 338212071 10871124 complement(2997103..2998467) 1 NC_015703.1 PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; KEGG: zpr:ZPR_2888 hypothetical protein; SPTR: uncharacterized protein; beta-Ala-His dipeptidase 2998467 10871124 Runsl_2593 Runella slithyformis DSM 19594 beta-Ala-His dipeptidase YP_004656126.1 2997103 R 761193 CDS YP_004656127.1 338212072 10871125 2998577..2999524 1 NC_015703.1 KEGG: fjo:Fjoh_4428 glycoside hydrolase; SPTR: Glycosyl hydrolase 65; hypothetical protein 2999524 10871125 Runsl_2594 Runella slithyformis DSM 19594 hypothetical protein YP_004656127.1 2998577 D 761193 CDS YP_004656128.1 338212073 10871126 2999635..2999955 1 NC_015703.1 hypothetical protein 2999955 10871126 Runsl_2595 Runella slithyformis DSM 19594 hypothetical protein YP_004656128.1 2999635 D 761193 CDS YP_004656129.1 338212074 10871127 3000571..3000744 1 NC_015703.1 KEGG: cyn:Cyan7425_2020 UDP-galactopyranose mutase; SPTR: UDP-galactopyranose mutase; hypothetical protein 3000744 10871127 Runsl_2596 Runella slithyformis DSM 19594 hypothetical protein YP_004656129.1 3000571 D 761193 CDS YP_004656130.1 338212075 10871128 3000982..3002136 1 NC_015703.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: cpi:Cpin_1791 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; manually curated; UDP-galactopyranose mutase 3002136 10871128 Runsl_2597 Runella slithyformis DSM 19594 UDP-galactopyranose mutase YP_004656130.1 3000982 D 761193 CDS YP_004656131.1 338212076 10871129 complement(3002271..3002669) 1 NC_015703.1 PFAM: Response regulator receiver domain; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterProIPR000014:IPR000673:IPR000780:IPR013767:IPR 013655:IPR003661:IPR003594:IPR001610; KEGG: sli:Slin_3102 signal transduction histidine kinase with CheB and CheR activity; PFAM: ATP-binding region, ATPase-like; PAS fold-3; Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; MCP methyltransferase, CheR-type; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PRIAM: Protein-glutamate methylesterase., Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase, CheR-type; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SPTR: Signal transduction histidine kinase with CheB and CheR activity; TIGRFAM: PAS; response regulator receiver protein 3002669 10871129 Runsl_2598 Runella slithyformis DSM 19594 response regulator receiver protein YP_004656131.1 3002271 R 761193 CDS YP_004656132.1 338212077 10871130 3002885..3006640 1 NC_015703.1 PFAM: CheB methylesterase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; CheR methyltransferase, SAM binding domain; His Kinase A (phosphoacceptor) domain; CheR methyltransferase, all-alpha domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; InterPro IPR000673; KEGG: sli:Slin_3103 CheB methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; PRIAM: Protein-glutamate methylesterase; SPTR: CheB methylesterase; signal transduction histidine kinase with CheB and CheR activity 3006640 10871130 Runsl_2599 Runella slithyformis DSM 19594 signal transduction histidine kinase with CheB and CheR activity YP_004656132.1 3002885 D 761193 CDS YP_004656133.1 338212078 10871131 3006747..3007781 1 NC_015703.1 PFAM: CheB methylesterase; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: dfe:Dfer_5585 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Estradiol 17-beta-dehydrogenase; SPTR: Probable oxidoreductase (Probable short-chain dehydrogenase); chemotaxis protein CheB 3007781 10871131 Runsl_2600 Runella slithyformis DSM 19594 chemotaxis protein CheB YP_004656133.1 3006747 D 761193 CDS YP_004656134.1 338212079 10871132 3008024..3008827 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154:IPR013149; KEGG: fjo:Fjoh_2657 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; SPTR: Alcohol dehydrogenase GroES domain protein; estradiol 17-beta-dehydrogenase 3008827 10871132 Runsl_2601 Runella slithyformis DSM 19594 estradiol 17-beta-dehydrogenase YP_004656134.1 3008024 D 761193 CDS YP_004656135.1 338212080 10871133 3009021..3010190 1 NC_015703.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: dfe:Dfer_0898 linoleoyl-CoA desaturase; PFAM: Fatty acid desaturase, type 1; PRIAM: Linoleoyl-CoA desaturase; SPTR: Linoleoyl-CoA desaturase; molecular chaperone GroES 3010190 10871133 Runsl_2602 Runella slithyformis DSM 19594 molecular chaperone GroES YP_004656135.1 3009021 D 761193 CDS YP_004656136.1 338212081 10871134 3010604..3011716 1 NC_015703.1 PFAM: Fatty acid desaturase; COGs: COG3564 conserved hypothetical protein; InterPro IPR008497; KEGG: nwa:Nwat_3004 hypothetical protein; PFAM: Protein of unknown function DUF779; SPTR: uncharacterized protein; Linoleoyl-CoA desaturase 3011716 10871134 Runsl_2603 Runella slithyformis DSM 19594 Linoleoyl-CoA desaturase YP_004656136.1 3010604 D 761193 CDS YP_004656137.1 338212082 10871135 complement(3011870..3012235) 1 NC_015703.1 PFAM: Protein of unknown function (DUF779); COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: dfe:Dfer_0072 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; SPTR: Aldehyde dehydrogenase; hypothetical protein 3012235 10871135 Runsl_2604 Runella slithyformis DSM 19594 hypothetical protein YP_004656137.1 3011870 R 761193 CDS YP_004656138.1 338212083 10871136 complement(3012301..3013824) 1 NC_015703.1 PFAM: Aldehyde dehydrogenase; aldehyde dehydrogenase 3013824 10871136 Runsl_2605 Runella slithyformis DSM 19594 aldehyde dehydrogenase YP_004656138.1 3012301 R 761193 CDS YP_004656139.1 338212084 10871137 complement(3013883..3013978) 1 NC_015703.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: cpi:Cpin_4153 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: transcriptional regulator (AraC/XylS family protein); hypothetical protein 3013978 10871137 Runsl_2606 Runella slithyformis DSM 19594 hypothetical protein YP_004656139.1 3013883 R 761193 CDS YP_004656140.1 338212085 10871138 3014060..3014983 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-type transcriptional regulator N-terminus; COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; InterPro IPR006148; KEGG: phe:Phep_0774 glucosamine-6-phosphate deaminase; PFAM: Glucosamine/galactosamine-6-phosphate isomerase; PRIAM: Glucosamine-6-phosphate deaminase; SPTR: Glucosamine/galactosamine-6-phosphate isomerase; AraC family transcriptional regulator 3014983 10871138 Runsl_2607 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004656140.1 3014060 D 761193 CDS YP_004656141.1 338212086 10871139 complement(3015053..3015796) 1 NC_015703.1 PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; TIGRFAM: glucosamine-6-phosphate isomerase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: dfe:Dfer_3265 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; PRIAM: Alpha-N-acetylgalactosaminidase; SPTR: Oxidoreductase domain protein; glucosamine-6-phosphate deaminase 3015796 10871139 Runsl_2608 Runella slithyformis DSM 19594 glucosamine-6-phosphate deaminase YP_004656141.1 3015053 R 761193 CDS YP_004656142.1 338212087 10871140 complement(3015962..3017404) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG0249 Mismatch repair ATPase (MutS family); HAMAP: DNA mismatch repair protein MutS, type 1; InterProIPR005748:IPR007695:IPR007860:IPR007696:IPR 007861:IPR000432; KEGG: sli:Slin_0516 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS, clamp; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; SPTR: DNA mismatch repair protein mutS; TIGRFAM: DNA mismatch repair protein MutS, type 1; alpha-N-acetylgalactosaminidase 3017404 10871140 Runsl_2609 Runella slithyformis DSM 19594 alpha-N-acetylgalactosaminidase YP_004656142.1 3015962 R 761193 CDS YP_004656143.1 338212088 10871141 3017569..3020274 1 NC_015703.1 PFAM: MutS family domain IV; MutS domain II; MutS domain V; MutS domain I; MutS domain III; TIGRFAM: DNA mismatch repair protein MutS; COGs: COG4886 Leucine-rich repeat (LRR) protein; InterPro IPR001611:IPR003591; KEGG: amr:AM1_2038 leucine-rich repeat-containing protein; PFAM: Leucine-rich repeat; PRIAM: Adenylate cyclase; SPTR: Leucine-rich repeat containing outermembrane protein; DNA mismatch repair protein mutS 3020274 10871141 Runsl_2610 Runella slithyformis DSM 19594 DNA mismatch repair protein mutS YP_004656143.1 3017569 D 761193 CDS YP_004656144.1 338212089 10871142 3020310..3023261 1 NC_015703.1 PFAM: Leucine Rich Repeat; manually curated; adenylate cyclase 3023261 10871142 Runsl_2611 Runella slithyformis DSM 19594 adenylate cyclase YP_004656144.1 3020310 D 761193 CDS YP_004656145.1 338212090 10871144 complement(3023621..3024868) 1 NC_015703.1 PFAM: Bacterial protein of unknown function (DUF894); COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR013096:IPR000005:IPR018060; KEGG: cpi:Cpin_1891 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; Cupin 2, conserved barrel; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; major facilitator superfamily protein 3024868 10871144 Runsl_2613 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004656145.1 3023621 R 761193 CDS YP_004656146.1 338212091 10871145 complement(3025062..3025934) 1 NC_015703.1 PFAM: Cupin domain; Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1858 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; AraC family transcriptional regulator 3025934 10871145 Runsl_2614 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004656146.1 3025062 R 761193 CDS YP_004656147.1 338212092 10871146 3026122..3029250 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: shg:Sph21_2862 RagB/SusD domain-containing protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 3029250 10871146 Runsl_2615 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004656147.1 3026122 D 761193 CDS YP_004656148.1 338212093 10871147 3029291..3030820 1 NC_015703.1 PFAM: SusD family; KEGG: dfe:Dfer_1563 hypothetical protein; SPTR: uncharacterized protein; RagB/SusD domain-containing protein 3030820 10871147 Runsl_2616 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004656148.1 3029291 D 761193 CDS YP_004656149.1 338212094 10871148 3030927..3033209 1 NC_015703.1 COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933; KEGG: aca:ACP_1347 Tat pathway signal sequence domain protein; PRIAM: Alpha-L-fucosidase; SMART: Glycoside hydrolase, family 29; SPTR: Tat pathway signal sequence domain protein; hypothetical protein 3033209 10871148 Runsl_2617 Runella slithyformis DSM 19594 hypothetical protein YP_004656149.1 3030927 D 761193 CDS YP_004656150.1 338212095 10871149 3033256..3034929 1 NC_015703.1 PFAM: Alpha-L-fucosidase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sli:Slin_0583 sulfatase; PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: Sulfatase; alpha-L-fucosidase 3034929 10871149 Runsl_2618 Runella slithyformis DSM 19594 alpha-L-fucosidase YP_004656150.1 3033256 D 761193 CDS YP_004656151.1 338212096 10871150 3034952..3036463 1 NC_015703.1 PFAM: Sulfatase; COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933; KEGG: bvu:BVU_1046 glycoside hydrolase; PRIAM: Alpha-L-fucosidase; SMART: Glycoside hydrolase, family 29; SPTR: uncharacterized protein; N-acetylgalactosamine-6-sulfatase 3036463 10871150 Runsl_2619 Runella slithyformis DSM 19594 N-acetylgalactosamine-6-sulfatase YP_004656151.1 3034952 D 761193 CDS YP_004656152.1 338212097 10871151 3036518..3037915 1 NC_015703.1 PFAM: Alpha-L-fucosidase; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013342; KEGG: dfe:Dfer_1860 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; SPTR: Mandelate racemase/muconate lactonizing protein; alpha-L-fucosidase 3037915 10871151 Runsl_2620 Runella slithyformis DSM 19594 alpha-L-fucosidase YP_004656152.1 3036518 D 761193 CDS YP_004656153.1 338212098 10871152 3037950..3039176 1 NC_015703.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: rca:Rcas_2118 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; mandelate racemase 3039176 10871152 Runsl_2621 Runella slithyformis DSM 19594 mandelate racemase YP_004656153.1 3037950 D 761193 CDS YP_004656154.1 338212099 10871153 3039189..3039953 1 NC_015703.1 PFAM: short chain dehydrogenase; InterPro IPR008000; KEGG: pdi:BDI_0103 hypothetical protein; PFAM: Rhamnose mutarotase; SPTR: uncharacterized protein; 3-oxoacyl-ACP reductase 3039953 10871153 Runsl_2622 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004656154.1 3039189 D 761193 CDS YP_004656155.1 338212100 10871154 3039959..3040315 1 NC_015703.1 PFAM: Domain of unknown function (DUF718); COGs: COG0738 Fucose permease; InterPro IPR005275:IPR005964:IPR011701; KEGG: cpi:Cpin_1994 L-fucose transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: L-fucose transporter; TIGRFAM: Bacterial glucose/galactose transporter; L-fucose permease; hypothetical protein 3040315 10871154 Runsl_2623 Runella slithyformis DSM 19594 hypothetical protein YP_004656155.1 3039959 D 761193 CDS YP_004656156.1 338212101 10871155 3040303..3041547 1 NC_015703.1 PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter; L-fucose:H+ symporter permease; COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933:IPR000421; KEGG: sli:Slin_2796 alpha-L-fucosidase; PFAM: Glycoside hydrolase, family 29; Coagulation factor 5/8 type, C-terminal; SMART: Glycoside hydrolase, family 29; SPTR: Alpha-L-fucosidase; glucose/galactose transporter 3041547 10871155 Runsl_2624 Runella slithyformis DSM 19594 glucose/galactose transporter YP_004656156.1 3040303 D 761193 CDS YP_004656157.1 338212102 10871156 3041563..3043281 1 NC_015703.1 PFAM: F5/8 type C domain; Alpha-L-fucosidase; KEGG: sur:STAUR_2877 hypothetical protein; SPTR: uncharacterized protein; glycoside hydrolase 3043281 10871156 Runsl_2625 Runella slithyformis DSM 19594 glycoside hydrolase YP_004656157.1 3041563 D 761193 CDS YP_004656158.1 338212103 10871157 3043296..3045890 1 NC_015703.1 PFAM: Glycosyl hydrolase 65 central catalytic domain; KEGG: dfe:Dfer_2146 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3045890 10871157 Runsl_2626 Runella slithyformis DSM 19594 hypothetical protein YP_004656158.1 3043296 D 761193 CDS YP_004656159.1 338212104 10871158 3045891..3048281 1 NC_015703.1 KEGG: pbs:Plabr_1678 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3048281 10871158 Runsl_2627 Runella slithyformis DSM 19594 hypothetical protein YP_004656159.1 3045891 D 761193 CDS YP_004656160.1 338212105 10871159 3048412..3049542 1 NC_015703.1 PFAM: Glycosyl hydrolases family 43; KEGG: pbs:Plabr_1678 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3049542 10871159 Runsl_2628 Runella slithyformis DSM 19594 hypothetical protein YP_004656160.1 3048412 D 761193 CDS YP_004656161.1 338212106 10871160 3049542..3050561 1 NC_015703.1 PFAM: Glycosyl hydrolases family 43; InterPro IPR006104; KEGG: dfe:Dfer_2269 glycoside hydrolase 2 sugar binding; PFAM: Glycoside hydrolase 2, carbohydrate-binding; SPTR: glycosyslhydrolase; hypothetical protein 3050561 10871160 Runsl_2629 Runella slithyformis DSM 19594 hypothetical protein YP_004656161.1 3049542 D 761193 CDS YP_004656162.1 338212107 10871161 3050571..3053516 1 NC_015703.1 COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: sli:Slin_4008 LacI family transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; glycoside hydrolase 3053516 10871161 Runsl_2630 Runella slithyformis DSM 19594 glycoside hydrolase YP_004656162.1 3050571 D 761193 CDS YP_004656163.1 338212108 10871162 complement(3053529..3054542) 1 NC_015703.1 PFAM: Bacterial regulatory proteins, lacI family; family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_2412 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; LacI family transcriptional regulator 3054542 10871162 Runsl_2631 Runella slithyformis DSM 19594 LacI family transcriptional regulator YP_004656163.1 3053529 R 761193 CDS YP_004656164.1 338212109 10871163 3054880..3057945 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: sli:Slin_2413 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 3057945 10871163 Runsl_2632 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004656164.1 3054880 D 761193 CDS YP_004656165.1 338212110 10871164 3057976..3059406 1 NC_015703.1 PFAM: SusD family; KEGG: dfe:Dfer_2604 hypothetical protein; SPTR: uncharacterized protein; RagB/SusD domain-containing protein 3059406 10871164 Runsl_2633 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004656165.1 3057976 D 761193 CDS YP_004656166.1 338212111 10871165 3059426..3060631 1 NC_015703.1 InterPro IPR002218; KEGG: dfe:Dfer_2605 pyridine nucleotide-disulphide oxidoreductase; PFAM: Glucose-inhibited division protein A-related; SPTR: pyridine nucleotide-disulphide oxidoreductase; hypothetical protein 3060631 10871165 Runsl_2634 Runella slithyformis DSM 19594 hypothetical protein YP_004656166.1 3059426 D 761193 CDS YP_004656167.1 338212112 10871166 3060638..3062440 1 NC_015703.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: dfe:Dfer_2606 ApbE family lipoprotein; PFAM: ApbE-like lipoprotein; SPTR: ApbE family lipoprotein; glucose-inhibited division protein A 3062440 10871166 Runsl_2635 Runella slithyformis DSM 19594 glucose-inhibited division protein A YP_004656167.1 3060638 D 761193 CDS YP_004656168.1 338212113 10871167 3062488..3063477 1 NC_015703.1 PFAM: ApbE family; KEGG: sli:Slin_2422 hypothetical protein; SPTR: uncharacterized protein; ApbE family lipoprotein 3063477 10871167 Runsl_2636 Runella slithyformis DSM 19594 ApbE family lipoprotein YP_004656168.1 3062488 D 761193 CDS YP_004656169.1 338212114 10871168 3063519..3065423 1 NC_015703.1 PFAM: N-terminal ig-like domain of cellulase; KEGG: sli:Slin_2414 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3065423 10871168 Runsl_2637 Runella slithyformis DSM 19594 hypothetical protein YP_004656169.1 3063519 D 761193 CDS YP_004656170.1 338212115 10871169 3065484..3066557 1 NC_015703.1 PFAM: Glycosyl hydrolases family 43; KEGG: sli:Slin_2415 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3066557 10871169 Runsl_2638 Runella slithyformis DSM 19594 hypothetical protein YP_004656170.1 3065484 D 761193 CDS YP_004656171.1 338212116 10871170 3066607..3069117 1 NC_015703.1 COGs: COG0591 Na+/proline symporter; InterPro IPR019900:IPR001734; KEGG: dfe:Dfer_2608 SSS sodium solute transporter superfamily; PFAM: Sodium/solute symporter; SPTR: SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup; hypothetical protein 3069117 10871170 Runsl_2639 Runella slithyformis DSM 19594 hypothetical protein YP_004656171.1 3066607 D 761193 CDS YP_004656172.1 338212117 10871171 3069469..3071178 1 NC_015703.1 PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006102:IPR006103:IPR001547; KEGG: sli:Slin_2419 beta-galactosidase; PFAM: Glycoside hydrolase 2, carbohydrate-binding; Glycoside hydrolase 2, immunoglobulin-like beta-sandwich; Glycoside hydrolase 2, TIM barrel; Glycoside hydrolase, family 5; PRIAM: Beta-glucuronidase; SPTR: Beta-galactosidase; sodium solute transporter superfamily protein 3071178 10871171 Runsl_2640 Runella slithyformis DSM 19594 sodium solute transporter superfamily protein YP_004656172.1 3069469 D 761193 CDS YP_004656173.1 338212118 10871172 3071482..3073491 1 NC_015703.1 PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; InterPro IPR003953; KEGG: sli:Slin_2420 hypothetical protein; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; SPTR: uncharacterized protein; beta-glucuronidase 3073491 10871172 Runsl_2641 Runella slithyformis DSM 19594 beta-glucuronidase YP_004656173.1 3071482 D 761193 CDS YP_004656174.1 338212119 10871173 3073621..3075972 1 NC_015703.1 PFAM: FAD binding domain; COGs: COG3652 outer membrane protein; KEGG: dfe:Dfer_3182 outer membrane protein-like protein; SPTR: Outer membrane protein-like protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3075972 10871173 Runsl_2642 Runella slithyformis DSM 19594 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_004656174.1 3073621 D 761193 CDS YP_004656175.1 338212120 10871174 3076113..3076688 1 NC_015703.1 COGs: COG4876 conserved hypothetical protein; InterPro IPR018691; KEGG: gym:GYMC10_2045 protein of unknown function DUF2188; PFAM: Protein of unknown function DUF2188; SPTR: uncharacterized protein; hypothetical protein 3076688 10871174 Runsl_2643 Runella slithyformis DSM 19594 hypothetical protein YP_004656175.1 3076113 D 761193 CDS YP_004656176.1 338212121 10871175 3076729..3076932 1 NC_015703.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2188); KEGG: chu:CHU_2068 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3076932 10871175 Runsl_2644 Runella slithyformis DSM 19594 hypothetical protein YP_004656176.1 3076729 D 761193 CDS YP_004656177.1 338212122 10871176 complement(3077230..3077766) 1 NC_015703.1 KEGG: mtt:Ftrac_2093 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3077766 10871176 Runsl_2645 Runella slithyformis DSM 19594 hypothetical protein YP_004656177.1 3077230 R 761193 CDS YP_004656178.1 338212123 10871177 3078119..3078541 1 NC_015703.1 COGs: COG0263 Glutamate 5-kinase; InterPro IPR005715:IPR001048:IPR002478; KEGG: sli:Slin_0426 glutamate 5-kinase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase; SMART: Pseudouridine synthase/archaeosine transglycosylase; SPTR: Glutamate 5-kinase; TIGRFAM: Glutamate 5-kinase, ProB-related; hypothetical protein 3078541 10871177 Runsl_2646 Runella slithyformis DSM 19594 hypothetical protein YP_004656178.1 3078119 D 761193 CDS YP_004656179.1 338212124 10871178 3078708..3079739 1 NC_015703.1 PFAM: PUA domain; Amino acid kinase; TIGRFAM: glutamate 5-kinase; COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: sli:Slin_5151 heat shock protein HSP20; PFAM: Heat shock protein Hsp20; SPTR: Heat shock protein Hsp20; glutamate 5-kinase 3079739 10871178 Runsl_2647 Runella slithyformis DSM 19594 glutamate 5-kinase YP_004656179.1 3078708 D 761193 CDS YP_004656180.1 338212125 10871179 complement(3079878..3080309) 1 NC_015703.1 PFAM: Hsp20/alpha crystallin family; InterPro IPR010432; KEGG: rci:RCIX2340 hypothetical protein; PFAM: RDD; SPTR: uncharacterized protein; heat shock protein Hsp20 3080309 10871179 Runsl_2648 Runella slithyformis DSM 19594 heat shock protein Hsp20 YP_004656180.1 3079878 R 761193 CDS YP_004656181.1 338212126 10871180 3080776..3081120 1 NC_015703.1 PFAM: RDD family; KEGG: pca:Pcar_0371 hypothetical protein; SPTR: uncharacterized protein; RDD domain-containing protein 3081120 10871180 Runsl_2649 Runella slithyformis DSM 19594 RDD domain-containing protein YP_004656181.1 3080776 D 761193 CDS YP_004656182.1 338212127 10871181 3081255..3081632 1 NC_015703.1 PFAM: Protein of unknown function (DUF2752); COGs: COG2008 Threonine aldolase; InterPro IPR001597; KEGG: dfe:Dfer_4745 threonine aldolase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase; PRIAM: Threonine aldolase; SPTR: Threonine aldolase; hypothetical protein 3081632 10871181 Runsl_2650 Runella slithyformis DSM 19594 hypothetical protein YP_004656182.1 3081255 D 761193 CDS YP_004656183.1 338212128 10871182 3081713..3082723 1 NC_015703.1 PFAM: Beta-eliminating lyase; threonine aldolase 3082723 10871182 Runsl_2651 Runella slithyformis DSM 19594 threonine aldolase YP_004656183.1 3081713 D 761193 CDS YP_004656184.1 338212129 10871183 complement(3083040..3084323) 1 NC_015703.1 COGs: COG2928 conserved hypothetical protein; InterPro IPR007462; KEGG: dfe:Dfer_5011 protein of unknown function DUF502; PFAM: Protein of unknown function DUF502; SPTR: uncharacterized protein; hypothetical protein 3084323 10871183 Runsl_2652 Runella slithyformis DSM 19594 hypothetical protein YP_004656184.1 3083040 R 761193 CDS YP_004656185.1 338212130 10871184 3084801..3085391 1 NC_015703.1 PFAM: Protein of unknown function (DUF502); COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018481; KEGG: dfe:Dfer_0249 glycosyl transferase 4; PFAM: Glycosyl transferase, family 4, conserved region; SPTR: Glycosyl transferase 4; hypothetical protein 3085391 10871184 Runsl_2653 Runella slithyformis DSM 19594 hypothetical protein YP_004656185.1 3084801 D 761193 CDS YP_004656186.1 338212131 10871185 complement(3085422..3086636) 1 NC_015703.1 PFAM: Glycosyl transferase 4; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_2592 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; glycosyl transferase family protein 3086636 10871185 Runsl_2654 Runella slithyformis DSM 19594 glycosyl transferase family protein YP_004656186.1 3085422 R 761193 CDS YP_004656187.1 338212132 10871186 complement(3086738..3087502) 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); KEGG: sli:Slin_2591 colanic acid biosynthesis acetyltransferase WcaF; SPTR: colanic acid biosynthesis acetyltransferase WcaF; family 2 glycosyl transferase 3087502 10871186 Runsl_2655 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004656187.1 3086738 R 761193 CDS YP_004656188.1 338212133 10871187 complement(3087588..3088163) 1 NC_015703.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_0252 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; colanic acid biosynthesis acetyltransferase WcaF 3088163 10871187 Runsl_2656 Runella slithyformis DSM 19594 colanic acid biosynthesis acetyltransferase WcaF YP_004656188.1 3087588 R 761193 CDS YP_004656189.1 338212134 10871188 complement(3088105..3089040) 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; InterPro IPR006264:IPR001986; KEGG: dfe:Dfer_5009 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; PRIAM: 3-phosphoshikimate 1-carboxyvinyltransferase; SPTR: 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; family 2 glycosyl transferase 3089040 10871188 Runsl_2657 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004656189.1 3088105 R 761193 CDS YP_004656190.1 338212135 10871189 3089217..3090452 1 NC_015703.1 PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR001140:IPR003439:IPR003593; KEGG: dfe:Dfer_0068 ABC transporter related; PFAM: ABC transporter-like; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; 3-phosphoshikimate 1-carboxyvinyltransferase 3090452 10871189 Runsl_2658 Runella slithyformis DSM 19594 3-phosphoshikimate 1-carboxyvinyltransferase YP_004656190.1 3089217 D 761193 CDS YP_004656191.1 338212136 10871190 3090576..3092345 1 NC_015703.1 PFAM: ABC transporter; ABC transporter transmembrane region; COGs: COG3568 Metal-dependent hydrolase; InterPro IPR005135; KEGG: sli:Slin_4762 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; xenobiotic-transporting ATPase 3092345 10871190 Runsl_2659 Runella slithyformis DSM 19594 xenobiotic-transporting ATPase YP_004656191.1 3090576 D 761193 CDS YP_004656192.1 338212137 10871191 complement(3092411..3093253) 1 NC_015703.1 PFAM: Endonuclease/Exonuclease/phosphatase; InterPro IPR012944; KEGG: sli:Slin_4761 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; hypothetical protein 3093253 10871191 Runsl_2660 Runella slithyformis DSM 19594 hypothetical protein YP_004656192.1 3092411 R 761193 CDS YP_004656193.1 338212138 10871192 complement(3093293..3095065) 1 NC_015703.1 PFAM: SusD family; InterPro IPR012910:IPR000531; KEGG: sli:Slin_4760 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; RagB/SusD domain-containing protein 3095065 10871192 Runsl_2661 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004656193.1 3093293 R 761193 CDS YP_004656194.1 338212139 10871193 complement(3095087..3098626) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: sli:Slin_5418 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; TonB-dependent receptor plug 3098626 10871193 Runsl_2662 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004656194.1 3095087 R 761193 CDS YP_004656195.1 338212140 10871194 complement(3098845..3099909) 1 NC_015703.1 PFAM: FecR protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_1462 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; anti-FecI sigma factor FecR 3099909 10871194 Runsl_2663 Runella slithyformis DSM 19594 anti-FecI sigma factor FecR YP_004656195.1 3098845 R 761193 CDS YP_004656196.1 338212141 10871195 complement(3100012..3100626) 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650; KEGG: mxa:MXAN_2289 hypothetical protein; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: Gly-Xaa carboxypeptidase; SPTR: Peptidase, M20E (Gly-X carboxypeptidase) subfamily; ECF subfamily RNA polymerase sigma-24 subunit 3100626 10871195 Runsl_2664 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004656196.1 3100012 R 761193 CDS YP_004656197.1 338212142 10871196 complement(3100734..3102191) 1 NC_015703.1 PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; COGs: COG0262 Dihydrofolate reductase; InterPro IPR001796; KEGG: sli:Slin_1051 dihydrofolate reductase; PFAM: Dihydrofolate reductase region; PRIAM: Dihydrofolate reductase; SPTR: Dihydrofolate reductase; Gly-Xaa carboxypeptidase 3102191 10871196 Runsl_2665 Runella slithyformis DSM 19594 Gly-Xaa carboxypeptidase YP_004656197.1 3100734 R 761193 CDS YP_004656198.1 338212143 10871197 complement(3102311..3102805) 1 NC_015703.1 PFAM: Dihydrofolate reductase; KEGG: bfo:BRAFLDRAFT_89036 hypothetical protein; SPTR: hemagglutinin-related protein; dihydrofolate reductase 3102805 10871197 Runsl_2666 Runella slithyformis DSM 19594 dihydrofolate reductase YP_004656198.1 3102311 R 761193 CDS YP_004656199.1 338212144 10871198 complement(3103061..3103765) 1 NC_015703.1 InterPro IPR003088; KEGG: dfe:Dfer_3236 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I; hypothetical protein 3103765 10871198 Runsl_2667 Runella slithyformis DSM 19594 hypothetical protein YP_004656199.1 3103061 R 761193 CDS YP_004656200.1 338212145 10871199 complement(3104090..3106021) 1 NC_015703.1 PFAM: Cytochrome c; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: sli:Slin_2896 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; cytochrome c class I 3106021 10871199 Runsl_2668 Runella slithyformis DSM 19594 cytochrome c class I YP_004656200.1 3104090 R 761193 CDS YP_004656201.1 338212146 10871200 complement(3106024..3106608) 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); InterPro IPR006342; KEGG: dfe:Dfer_4789 methyltransferase FkbM family; SPTR: Methyltransferase FkbM family; TIGRFAM: Methyltransferase FkbM; hypothetical protein 3106608 10871200 Runsl_2669 Runella slithyformis DSM 19594 hypothetical protein YP_004656201.1 3106024 R 761193 CDS YP_004656202.1 338212147 10871201 3106673..3107479 1 NC_015703.1 TIGRFAM: methyltransferase, FkbM family; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dfe:Dfer_4786 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; FkbM family methyltransferase 3107479 10871201 Runsl_2670 Runella slithyformis DSM 19594 FkbM family methyltransferase YP_004656202.1 3106673 D 761193 CDS YP_004656203.1 338212148 10871202 3107476..3108729 1 NC_015703.1 PFAM: Glycosyl transferases group 1; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: dfe:Dfer_2713 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; group 1 glycosyl transferase 3108729 10871202 Runsl_2671 Runella slithyformis DSM 19594 group 1 glycosyl transferase YP_004656203.1 3107476 D 761193 CDS YP_004656204.1 338212149 10871203 complement(3108837..3109646) 1 NC_015703.1 PFAM: short chain dehydrogenase; KEGG: dfe:Dfer_3999 hypothetical protein; SPTR: uncharacterized protein; 3-oxoacyl-ACP reductase 3109646 10871203 Runsl_2672 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004656204.1 3108837 R 761193 CDS YP_004656205.1 338212150 10871204 3109725..3110708 1 NC_015703.1 InterPro IPR003675; KEGG: cao:Celal_3410 abortive infection protein; PFAM: Abortive infection protein; SPTR: Abortive infection protein; hypothetical protein 3110708 10871204 Runsl_2673 Runella slithyformis DSM 19594 hypothetical protein YP_004656205.1 3109725 D 761193 CDS YP_004656206.1 338212151 10871205 complement(3110698..3111567) 1 NC_015703.1 PFAM: CAAX amino terminal protease; COGs: COG4420 membrane protein; InterPro IPR010406; KEGG: cpi:Cpin_1225 hypothetical protein; PFAM: Protein of unknown function DUF1003; SPTR: uncharacterized protein; manually curated; abortive infection protein 3111567 10871205 Runsl_2674 Runella slithyformis DSM 19594 abortive infection protein YP_004656206.1 3110698 R 761193 CDS YP_004656207.1 338212152 10871206 3112331..3112852 1 NC_015703.1 PFAM: Protein of unknown function (DUF1003); COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR011904:IPR000873; KEGG: sli:Slin_2894 acetate/CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Acetate--CoA ligase; SPTR: Acetyl-coenzyme A synthetase; TIGRFAM: Acetate--CoA ligase; hypothetical protein 3112852 10871206 Runsl_2675 Runella slithyformis DSM 19594 hypothetical protein YP_004656207.1 3112331 D 761193 CDS YP_004656208.1 338212153 10871207 complement(3112907..3114796) 1 NC_015703.1 PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme; TIGRFAM: acetate--CoA ligase; manually curated; acetate/CoA ligase 3114796 10871207 Runsl_2676 Runella slithyformis DSM 19594 acetate/CoA ligase YP_004656208.1 3112907 R 761193 CDS YP_004656209.1 338212154 10871209 complement(3115548..3115772) 1 NC_015703.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR005828; KEGG: fjo:Fjoh_1409 major facilitator transporter; PFAM: General substrate transporter; SPTR: Major facilitator superfamily MFS_1; hypothetical protein 3115772 10871209 Runsl_2678 Runella slithyformis DSM 19594 hypothetical protein YP_004656209.1 3115548 R 761193 CDS YP_004656210.1 338212155 10871210 complement(3115894..3117465) 1 NC_015703.1 PFAM: Sugar (and other) transporter; InterPro IPR000182; KEGG: pbs:Plabr_1279 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; general substrate transporter 3117465 10871210 Runsl_2679 Runella slithyformis DSM 19594 general substrate transporter YP_004656210.1 3115894 R 761193 CDS YP_004656211.1 338212156 10871211 3117847..3118263 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; SPTR: uncharacterized protein; N-acetyltransferase GCN5 3118263 10871211 Runsl_2680 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004656211.1 3117847 D 761193 CDS YP_004656212.1 338212157 10871212 3118272..3118775 1 NC_015703.1 COGs: COG0628 permease; InterPro IPR002549; KEGG: chu:CHU_2927 permease; PFAM: Uncharacterised protein family UPF0118; SPTR: Permease; hypothetical protein 3118775 10871212 Runsl_2681 Runella slithyformis DSM 19594 hypothetical protein YP_004656212.1 3118272 D 761193 CDS YP_004656213.1 338212158 10871213 complement(3118781..3119899) 1 NC_015703.1 PFAM: Domain of unknown function DUF20; COGs: COG3685 conserved hypothetical protein; InterPro IPR010287; KEGG: phe:Phep_1308 hypothetical protein; PFAM: Protein of unknown function DUF892; SPTR: uncharacterized protein; hypothetical protein 3119899 10871213 Runsl_2682 Runella slithyformis DSM 19594 hypothetical protein YP_004656213.1 3118781 R 761193 CDS YP_004656214.1 338212159 10871214 complement(3120130..3120657) 1 NC_015703.1 PFAM: Domain of unknown function (DUF892); COGs: COG0439 Biotin carboxylase; InterPro IPR004549:IPR005481:IPR005479:IPR005482; KEGG: dfe:Dfer_4148 acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; PRIAM: Biotin carboxylase; SPTR: Acetyl-CoA carboxylase, biotin carboxylase; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; hypothetical protein 3120657 10871214 Runsl_2683 Runella slithyformis DSM 19594 hypothetical protein YP_004656214.1 3120130 R 761193 CDS YP_004656215.1 338212160 10871215 complement(3120961..3122304) 1 NC_015703.1 PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit; COGs: COG0511 Biotin carboxyl carrier protein; InterPro IPR001249:IPR000089; KEGG: sli:Slin_5246 acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: Biotin/lipoyl attachment; SPTR: Acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: Acetyl-CoA biotin carboxyl carrier; acetyl-CoA carboxylase, biotin carboxylase 3122304 10871215 Runsl_2684 Runella slithyformis DSM 19594 acetyl-CoA carboxylase, biotin carboxylase YP_004656215.1 3120961 R 761193 CDS YP_004656216.1 338212161 10871216 complement(3122424..3122936) 1 NC_015703.1 PFAM: Biotin-requiring enzyme; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; COGs: COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); HAMAP: Translation elongation factor P; InterPro IPR011768:IPR013185:IPR001059:IPR015365; KEGG: sli:Slin_5247 translation elongation factor P; PFAM: Translation elongation factor, KOW-like; Translation elongation factor P/YeiP, central; Elongation factor P, C-terminal; SPTR: Elongation factor P; TIGRFAM: Translation elongation factor P; acetyl-CoA carboxylase, biotin carboxyl carrier protein 3122936 10871216 Runsl_2685 Runella slithyformis DSM 19594 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_004656216.1 3122424 R 761193 CDS YP_004656217.1 338212162 10871217 complement(3122951..3123514) 1 NC_015703.1 PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P; COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); InterPro IPR004655:IPR013751:IPR013747; KEGG: dfe:Dfer_4151 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase I; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase 3 2; TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); elongation factor P 3123514 10871217 Runsl_2686 Runella slithyformis DSM 19594 elongation factor P YP_004656217.1 3122951 R 761193 CDS YP_004656218.1 338212163 10871218 complement(3123634..3124623) 1 NC_015703.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; COGs: COG0416 Fatty acid/phospholipid biosynthesis enzyme; HAMAP: Phospholipid biosynthesis protein, PlsX like; InterPro IPR012281:IPR003664; KEGG: dfe:Dfer_4152 fatty acid/phospholipid synthesis protein PlsX; PFAM: Fatty acid synthesis plsX protein; SPTR: Phosphate acyltransferase; TIGRFAM: Phospholipid biosynthesis protein, PlsX like; 3-oxoacyl-ACP synthase 3124623 10871218 Runsl_2687 Runella slithyformis DSM 19594 3-oxoacyl-ACP synthase YP_004656218.1 3123634 R 761193 CDS YP_004656219.1 338212164 10871219 complement(3124723..3125661) 1 NC_015703.1 PFAM: Fatty acid synthesis protein; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; HAMAP: Ribosomal protein L32p; InterPro IPR002677; KEGG: dfe:Dfer_4153 ribosomal protein L32; PFAM: Ribosomal protein L32p; SPTR: 50S ribosomal protein L32; TIGRFAM: Ribosomal protein L32p; phosphate acyltransferase 3125661 10871219 Runsl_2688 Runella slithyformis DSM 19594 phosphate acyltransferase YP_004656219.1 3124723 R 761193 CDS YP_004656220.1 338212165 10871220 complement(3125812..3126003) 1 NC_015703.1 PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; InterPro IPR003772; KEGG: dfe:Dfer_4154 protein of unknown function DUF177; PFAM: Protein of unknown function DUF177; SPTR: uncharacterized protein; 50S ribosomal protein L32 3126003 10871220 Runsl_2689 Runella slithyformis DSM 19594 50S ribosomal protein L32 YP_004656220.1 3125812 R 761193 CDS YP_004656221.1 338212166 10871221 complement(3126056..3126661) 1 NC_015703.1 PFAM: Uncharacterized ACR, COG1399; KEGG: cpi:Cpin_0240 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3126661 10871221 Runsl_2690 Runella slithyformis DSM 19594 hypothetical protein YP_004656221.1 3126056 R 761193 CDS YP_004656222.1 338212167 10871222 3126893..3127576 1 NC_015703.1 InterPro IPR011701; KEGG: sli:Slin_1089 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; hypothetical protein 3127576 10871222 Runsl_2691 Runella slithyformis DSM 19594 hypothetical protein YP_004656222.1 3126893 D 761193 CDS YP_004656223.1 338212168 10871223 complement(3127633..3129096) 1 NC_015703.1 PFAM: Major Facilitator Superfamily; COGs: COG4704 conserved hypothetical protein; InterPro IPR018673; KEGG: sli:Slin_1194 hypothetical protein; PFAM: Protein of unknown function DUF2141; SPTR: uncharacterized protein; major facilitator superfamily protein 3129096 10871223 Runsl_2692 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004656223.1 3127633 R 761193 CDS YP_004656224.1 338212169 10871224 3129242..3129727 1 NC_015703.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2141); KEGG: cly:Celly_0054 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3129727 10871224 Runsl_2693 Runella slithyformis DSM 19594 hypothetical protein YP_004656224.1 3129242 D 761193 CDS YP_004656225.1 338212170 10871225 complement(3129734..3130279) 1 NC_015703.1 PFAM: Protein of unknown function (DUF2911); KEGG: sli:Slin_0961 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3130279 10871225 Runsl_2694 Runella slithyformis DSM 19594 hypothetical protein YP_004656225.1 3129734 R 761193 CDS YP_004656226.1 338212171 10871226 complement(3130333..3132477) 1 NC_015703.1 PFAM: Planctomycete cytochrome C; InterPro IPR006311:IPR010869; KEGG: dfe:Dfer_1594 protein of unknown function DUF1501; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein; hypothetical protein 3132477 10871226 Runsl_2695 Runella slithyformis DSM 19594 hypothetical protein YP_004656226.1 3130333 R 761193 CDS YP_004656227.1 338212172 10871227 complement(3132534..3133988) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1501); InterPro IPR011429:IPR011444; KEGG: dfe:Dfer_1978 protein of unknown function DUF1549; PFAM: Protein of unknown function DUF1549; Cytochrome C, Planctomycete; SPTR: uncharacterized protein; hypothetical protein 3133988 10871227 Runsl_2696 Runella slithyformis DSM 19594 hypothetical protein YP_004656227.1 3132534 R 761193 CDS YP_004656228.1 338212173 10871228 complement(3134038..3136377) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553); COGs: COG1597 Sphingosine kinase; InterPro IPR005218:IPR001206; KEGG: fbc:FB2170_15613 hypothetical protein; PFAM: Diacylglycerol kinase, catalytic region; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00147; hypothetical protein 3136377 10871228 Runsl_2697 Runella slithyformis DSM 19594 hypothetical protein YP_004656228.1 3134038 R 761193 CDS YP_004656229.1 338212174 10871229 complement(3136542..3137504) 1 NC_015703.1 PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: lipid kinase, YegS/Rv2252/BmrU family; COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: ava:Ava_4167 hypothetical protein; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein; hypothetical protein 3137504 10871229 Runsl_2698 Runella slithyformis DSM 19594 hypothetical protein YP_004656229.1 3136542 R 761193 CDS YP_004656230.1 338212175 10871230 3138026..3138259 1 NC_015703.1 PFAM: Protein of unknown function (DUF433); COGs: COG4634 conserved hypothetical protein; KEGG: syf:Synpcc7942_0532 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3138259 10871230 Runsl_2699 Runella slithyformis DSM 19594 hypothetical protein YP_004656230.1 3138026 D 761193 CDS YP_004656231.1 338212176 10871231 3138256..3138609 1 NC_015703.1 PFAM: Protein of unknown function DUF82; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR001140:IPR003439:IPR003593; KEGG: sli:Slin_6513 ABC transporter; PFAM: ABC transporter-like; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; hypothetical protein 3138609 10871231 Runsl_2700 Runella slithyformis DSM 19594 hypothetical protein YP_004656231.1 3138256 D 761193 CDS YP_004656232.1 338212177 10871232 3138610..3140436 1 NC_015703.1 PFAM: ABC transporter; ABC transporter transmembrane region; Prodigal; manually curated; xenobiotic-transporting ATPase 3140436 10871232 Runsl_2701 Runella slithyformis DSM 19594 xenobiotic-transporting ATPase YP_004656232.1 3138610 D 761193 CDS YP_004656233.1 338212178 10871234 complement(3141257..3141934) 1 NC_015703.1 KEGG: sli:Slin_2244 pirin; SPTR: Pirin-like protein; peptidase M10A and M12B matrixin and adamalysin 3141934 10871234 Runsl_2703 Runella slithyformis DSM 19594 peptidase M10A and M12B matrixin and adamalysin YP_004656233.1 3141257 R 761193 CDS YP_004656234.1 338212179 10871235 complement(3142015..3142713) 1 NC_015703.1 PFAM: Pirin; KEGG: smm:Smp_184790 hypothetical protein; SPTR: uncharacterized protein; pirin 3142713 10871235 Runsl_2704 Runella slithyformis DSM 19594 pirin YP_004656234.1 3142015 R 761193 CDS YP_004656235.1 338212180 10871236 complement(3142777..3143289) 1 NC_015703.1 COGs: COG3485 Protocatechuate 3 4-dioxygenase beta subunit; InterPro IPR000627; KEGG: sli:Slin_2243 intradiol ring-cleavage dioxygenase; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; SPTR: Intradiol ring-cleavage dioxygenase; hypothetical protein 3143289 10871236 Runsl_2705 Runella slithyformis DSM 19594 hypothetical protein YP_004656235.1 3142777 R 761193 CDS YP_004656236.1 338212181 10871237 complement(3143365..3144105) 1 NC_015703.1 PFAM: Dioxygenase; COGs: COG0793 Periplasmic protease; InterPro IPR005151; KEGG: ppn:Palpr_1231 hypothetical protein; PFAM: Peptidase S41; SMART: Peptidase S41; SPTR: Conserved repeat domain protein; intradiol ring-cleavage dioxygenase 3144105 10871237 Runsl_2706 Runella slithyformis DSM 19594 intradiol ring-cleavage dioxygenase YP_004656236.1 3143365 R 761193 CDS YP_004656237.1 338212182 10871238 complement(3144223..3145554) 1 NC_015703.1 PFAM: Peptidase S41; peptidase S41 3145554 10871238 Runsl_2707 Runella slithyformis DSM 19594 peptidase S41 YP_004656237.1 3144223 R 761193 CDS YP_004656238.1 338212183 10871239 complement(3145611..3145778) 1 NC_015703.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_2242 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; hypothetical protein 3145778 10871239 Runsl_2708 Runella slithyformis DSM 19594 hypothetical protein YP_004656238.1 3145611 R 761193 CDS YP_004656239.1 338212184 10871240 complement(3145778..3146485) 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_2241 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; LytTR family two component transcriptional regulator 3146485 10871240 Runsl_2709 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004656239.1 3145778 R 761193 CDS YP_004656240.1 338212185 10871241 complement(3146482..3147588) 1 NC_015703.1 PFAM: Histidine kinase; signal transduction histidine kinase 3147588 10871241 Runsl_2710 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004656240.1 3146482 R 761193 CDS YP_004656241.1 338212186 10871242 3147628..3147738 1 NC_015703.1 InterPro IPR001387:IPR013096; KEGG: shg:Sph21_0215 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; hypothetical protein 3147738 10871242 Runsl_2711 Runella slithyformis DSM 19594 hypothetical protein YP_004656241.1 3147628 D 761193 CDS YP_004656242.1 338212187 10871243 3147766..3148338 1 NC_015703.1 PFAM: Cupin domain; Helix-turn-helix; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: dfe:Dfer_2670 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28; helix-turn-helix domain-containing protein 3148338 10871243 Runsl_2712 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004656242.1 3147766 D 761193 CDS YP_004656243.1 338212188 10871244 3148392..3149330 1 NC_015703.1 PFAM: Peptidase M28; COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: sli:Slin_1904 L-sorbosone dehydrogenase; SPTR: L-sorbosone dehydrogenase; peptidase M28 3149330 10871244 Runsl_2713 Runella slithyformis DSM 19594 peptidase M28 YP_004656243.1 3148392 D 761193 CDS YP_004656244.1 338212189 10871245 3149488..3150783 1 NC_015703.1 PFAM: Glucose / Sorbosone dehydrogenase; InterPro IPR002781; KEGG: cly:Celly_1275 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: uncharacterized protein; L-sorbosone dehydrogenase 3150783 10871245 Runsl_2714 Runella slithyformis DSM 19594 L-sorbosone dehydrogenase YP_004656244.1 3149488 D 761193 CDS YP_004656245.1 338212190 10871246 3150818..3151609 1 NC_015703.1 PFAM: Sulfite exporter TauE/SafE; InterPro IPR000182; KEGG: sli:Slin_2328 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; hypothetical protein 3151609 10871246 Runsl_2715 Runella slithyformis DSM 19594 hypothetical protein YP_004656245.1 3150818 D 761193 CDS YP_004656246.1 338212191 10871247 complement(3151682..3152119) 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; N-acetyltransferase GCN5 3152119 10871247 Runsl_2716 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004656246.1 3151682 R 761193 CDS YP_004656247.1 338212192 10871248 complement(3152277..3152543) 1 NC_015703.1 PFAM: Muconolactone delta-isomerase; COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155; KEGG: pmy:Pmen_2005 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; PRIAM: 12-oxophytodienoate reductase; SPTR: NADH:flavin oxidoreductase/NADH oxidase; hypothetical protein 3152543 10871248 Runsl_2717 Runella slithyformis DSM 19594 hypothetical protein YP_004656247.1 3152277 R 761193 CDS YP_004656248.1 338212193 10871249 complement(3152599..3153693) 1 NC_015703.1 PFAM: NADH:flavin oxidoreductase / NADH oxidase; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: bbe:BBR47_37980 hypothetical protein; PFAM: Helix-turn-helix, HxlR type; SPTR: uncharacterized protein; 12-oxophytodienoate reductase 3153693 10871249 Runsl_2718 Runella slithyformis DSM 19594 12-oxophytodienoate reductase YP_004656248.1 3152599 R 761193 CDS YP_004656249.1 338212194 10871250 3153762..3154118 1 NC_015703.1 PFAM: HxlR-like helix-turn-helix; KEGG: lby:Lbys_3464 hypothetical protein; SPTR: uncharacterized protein; HxlR family transcriptional regulator 3154118 10871250 Runsl_2719 Runella slithyformis DSM 19594 HxlR family transcriptional regulator YP_004656249.1 3153762 D 761193 CDS YP_004656250.1 338212195 10871251 complement(3154198..3154827) 1 NC_015703.1 KEGG: gym:GYMC10_3038 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3154827 10871251 Runsl_2720 Runella slithyformis DSM 19594 hypothetical protein YP_004656250.1 3154198 R 761193 CDS YP_004656251.1 338212196 10871252 3155141..3157021 1 NC_015703.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: dfe:Dfer_1399 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; hypothetical protein 3157021 10871252 Runsl_2721 Runella slithyformis DSM 19594 hypothetical protein YP_004656251.1 3155141 D 761193 CDS YP_004656252.1 338212197 10871253 3157255..3158703 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Prodigal; manually curated; oxidoreductase domain-containing protein 3158703 10871253 Runsl_2722 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004656252.1 3157255 D 761193 CDS YP_004656253.1 338212198 10871255 complement(3159649..3159987) 1 NC_015703.1 PFAM: Bacterial regulatory protein, arsR family; KEGG: sli:Slin_5721 hypothetical protein; SPTR: uncharacterized protein; regulatory protein ArsR 3159987 10871255 Runsl_2724 Runella slithyformis DSM 19594 regulatory protein ArsR YP_004656253.1 3159649 R 761193 CDS YP_004656254.1 338212199 10871256 complement(3160171..3160512) 1 NC_015703.1 KEGG: mtt:Ftrac_1064 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3160512 10871256 Runsl_2725 Runella slithyformis DSM 19594 hypothetical protein YP_004656254.1 3160171 R 761193 CDS YP_004656255.1 338212200 10871257 complement(3160520..3160942) 1 NC_015703.1 KEGG: sli:Slin_5723 TetR family transcriptional regulator; SPTR: Transcriptional regulator, TetR family; hypothetical protein 3160942 10871257 Runsl_2726 Runella slithyformis DSM 19594 hypothetical protein YP_004656255.1 3160520 R 761193 CDS YP_004656256.1 338212201 10871258 complement(3161006..3161539) 1 NC_015703.1 PFAM: Bacterial regulatory proteins, tetR family; TetR family transcriptional regulator 3161539 10871258 Runsl_2727 Runella slithyformis DSM 19594 TetR family transcriptional regulator YP_004656256.1 3161006 R 761193 CDS YP_004656257.1 338212202 10871259 complement(3161536..3161715) 1 NC_015703.1 COGs: COG3655 transcriptional regulator protein; InterPro IPR001387; KEGG: fba:FIC_01723 DNA-binding protein; SMART: Helix-turn-helix type 3; SPTR: DNA-binding protein; hypothetical protein 3161715 10871259 Runsl_2728 Runella slithyformis DSM 19594 hypothetical protein YP_004656257.1 3161536 R 761193 CDS YP_004656258.1 338212203 10871260 complement(3161824..3162039) 1 NC_015703.1 PFAM: Helix-turn-helix; KEGG: lby:Lbys_0955 hypothetical protein; SPTR: uncharacterized protein; XRE family transcriptional regulator 3162039 10871260 Runsl_2729 Runella slithyformis DSM 19594 XRE family transcriptional regulator YP_004656258.1 3161824 R 761193 CDS YP_004656259.1 338212204 10871261 complement(3162043..3162579) 1 NC_015703.1 hypothetical protein 3162579 10871261 Runsl_2730 Runella slithyformis DSM 19594 hypothetical protein YP_004656259.1 3162043 R 761193 CDS YP_004656260.1 338212205 10871262 3162817..3163074 1 NC_015703.1 KEGG: swp:swp_4221 hypothetical protein; SPTR: Predicted protein; hypothetical protein 3163074 10871262 Runsl_2731 Runella slithyformis DSM 19594 hypothetical protein YP_004656260.1 3162817 D 761193 CDS YP_004656261.1 338212206 10871263 complement(3163182..3163592) 1 NC_015703.1 InterPro IPR012867; KEGG: mtt:Ftrac_3142 hypothetical protein; PFAM: Protein of unknown function DUF1648; SPTR: uncharacterized protein; hypothetical protein 3163592 10871263 Runsl_2732 Runella slithyformis DSM 19594 hypothetical protein YP_004656261.1 3163182 R 761193 CDS YP_004656262.1 338212207 10871264 complement(3163836..3164336) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1648); KEGG: sli:Slin_6607 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3164336 10871264 Runsl_2733 Runella slithyformis DSM 19594 hypothetical protein YP_004656262.1 3163836 R 761193 CDS YP_004656263.1 338212208 10871265 complement(3164820..3167039) 1 NC_015703.1 COGs: COG3292 periplasmic ligand-binding sensor domain; InterPro IPR011110; KEGG: sli:Slin_6608 transcriptional regulator; PFAM: Two component regulator propeller; SPTR: Two component regulator propeller domain protein; hypothetical protein 3167039 10871265 Runsl_2734 Runella slithyformis DSM 19594 hypothetical protein YP_004656263.1 3164820 R 761193 CDS YP_004656264.1 338212209 10871266 complement(3167191..3169560) 1 NC_015703.1 PFAM: Two component regulator propeller; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR014327:IPR007627:IPR013249; KEGG: dfe:Dfer_4314 transcriptional regulator, LuxR family; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: Transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; two component regulator propeller domain-containing protein 3169560 10871266 Runsl_2735 Runella slithyformis DSM 19594 two component regulator propeller domain-containing protein YP_004656264.1 3167191 R 761193 CDS YP_004656265.1 338212210 10871267 3169789..3170331 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3220 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; ECF subfamily RNA polymerase sigma-24 subunit 3170331 10871267 Runsl_2736 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004656265.1 3169789 D 761193 CDS YP_004656266.1 338212211 10871268 3170620..3173985 1 NC_015703.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: dfe:Dfer_0616 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 3173985 10871268 Runsl_2737 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004656266.1 3170620 D 761193 CDS YP_004656267.1 338212212 10871269 3174015..3175652 1 NC_015703.1 COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_0615 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein 3175652 10871269 Runsl_2738 Runella slithyformis DSM 19594 hypothetical protein YP_004656267.1 3174015 D 761193 CDS YP_004656268.1 338212213 10871270 3175883..3179164 1 NC_015703.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: dfe:Dfer_0616 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 3179164 10871270 Runsl_2739 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004656268.1 3175883 D 761193 CDS YP_004656269.1 338212214 10871271 3179195..3180880 1 NC_015703.1 COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: lby:Lbys_3376 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein 3180880 10871271 Runsl_2740 Runella slithyformis DSM 19594 hypothetical protein YP_004656269.1 3179195 D 761193 CDS YP_004656270.1 338212215 10871272 3181185..3184598 1 NC_015703.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: lby:Lbys_3377 hypothetical protein; SPTR: uncharacterized protein; manually curated; TonB-dependent receptor plug 3184598 10871272 Runsl_2741 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004656270.1 3181185 D 761193 CDS YP_004656271.1 338212216 10871273 3184621..3186258 1 NC_015703.1 KEGG: sli:Slin_6613 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3186258 10871273 Runsl_2742 Runella slithyformis DSM 19594 hypothetical protein YP_004656271.1 3184621 D 761193 CDS YP_004656272.1 338212217 10871274 3186339..3187583 1 NC_015703.1 COGs: COG4287 PhoPQ-activated pathogenicity-related protein; InterPro IPR009199; KEGG: dfe:Dfer_3217 hypothetical protein; PFAM: PhoPQ-activated pathogenicity-related protein, PqaA type; SPTR: uncharacterized protein; hypothetical protein 3187583 10871274 Runsl_2743 Runella slithyformis DSM 19594 hypothetical protein YP_004656272.1 3186339 D 761193 CDS YP_004656273.1 338212218 10871275 3187671..3189017 1 NC_015703.1 PFAM: PhoPQ-activated pathogenicity-related protein; COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129; KEGG: dfe:Dfer_3215 glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase; SPTR: Glycerophosphoryl diester phosphodiesterase; PhoPQ-activated pathogenicity-like protein PqaA type 3189017 10871275 Runsl_2744 Runella slithyformis DSM 19594 PhoPQ-activated pathogenicity-like protein PqaA type YP_004656273.1 3187671 D 761193 CDS YP_004656274.1 338212219 10871276 3189462..3190271 1 NC_015703.1 PFAM: Glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 3190271 10871276 Runsl_2745 Runella slithyformis DSM 19594 glycerophosphoryl diester phosphodiesterase YP_004656274.1 3189462 D 761193 CDS YP_004656275.1 338212220 10871277 3190432..3190626 1 NC_015703.1 COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129:IPR003140; KEGG: dfe:Dfer_3909 glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase; Phospholipase/carboxylesterase; SPTR: Glycerophosphoryl diester phosphodiesterase; hypothetical protein 3190626 10871277 Runsl_2746 Runella slithyformis DSM 19594 hypothetical protein YP_004656275.1 3190432 D 761193 CDS YP_004656276.1 338212221 10871278 3190664..3192382 1 NC_015703.1 PFAM: Glycerophosphoryl diester phosphodiesterase; alpha/beta hydrolase fold; InterPro IPR004843; KEGG: dfe:Dfer_3216 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; glycerophosphoryl diester phosphodiesterase 3192382 10871278 Runsl_2747 Runella slithyformis DSM 19594 glycerophosphoryl diester phosphodiesterase YP_004656276.1 3190664 D 761193 CDS YP_004656277.1 338212222 10871279 3192474..3194243 1 NC_015703.1 PFAM: Calcineurin-like phosphoesterase; COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545:IPR001650:IPR014001; KEGG: sli:Slin_3330 DEAD/DEAH box helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein; metallophosphoesterase 3194243 10871279 Runsl_2748 Runella slithyformis DSM 19594 metallophosphoesterase YP_004656277.1 3192474 D 761193 CDS YP_004656278.1 338212223 10871280 3194324..3195652 1 NC_015703.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; InterPro IPR003088; KEGG: fbc:FB2170_05305 large, multifunctional secreted protein; PFAM: Cytochrome c, class I; SPTR: large, multifunctional secreted protein; DEAD/DEAH box helicase 3195652 10871280 Runsl_2749 Runella slithyformis DSM 19594 DEAD/DEAH box helicase YP_004656278.1 3194324 D 761193 CDS YP_004656279.1 338212224 10871281 3195844..3198174 1 NC_015703.1 COGs: COG4948 L-alanine-DL-glutamate epimerase; KEGG: dfe:Dfer_1270 L-alanine-DL-glutamate epimerase-like protein; SPTR: L-alanine-DL-glutamate epimerase-like protein; cytochrome c class I 3198174 10871281 Runsl_2750 Runella slithyformis DSM 19594 cytochrome c class I YP_004656279.1 3195844 D 761193 CDS YP_004656280.1 338212225 10871282 3198221..3199567 1 NC_015703.1 COGs: COG4299 conserved hypothetical protein; InterPro IPR019259; KEGG: dfe:Dfer_3263 hypothetical protein; PFAM: Protein of unknown function DUF2261, transmembrane; SPTR: uncharacterized protein; L-alanine-DL-glutamate epimerase-like protein 3199567 10871282 Runsl_2751 Runella slithyformis DSM 19594 L-alanine-DL-glutamate epimerase-like protein YP_004656280.1 3198221 D 761193 CDS YP_004656281.1 338212226 10871283 complement(3199696..3200805) 1 NC_015703.1 hypothetical protein 3200805 10871283 Runsl_2752 Runella slithyformis DSM 19594 hypothetical protein YP_004656281.1 3199696 R 761193 CDS YP_004656282.1 338212227 10871284 complement(3200888..3201280) 1 NC_015703.1 KEGG: sli:Slin_6079 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3201280 10871284 Runsl_2753 Runella slithyformis DSM 19594 hypothetical protein YP_004656282.1 3200888 R 761193 CDS YP_004656283.1 338212228 10871285 complement(3201343..3201870) 1 NC_015703.1 COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: dfe:Dfer_0298 esterase; PFAM: esterase; SPTR: esterase; hypothetical protein 3201870 10871285 Runsl_2754 Runella slithyformis DSM 19594 hypothetical protein YP_004656283.1 3201343 R 761193 CDS YP_004656284.1 338212229 10871286 complement(3202066..3202938) 1 NC_015703.1 PFAM: esterase; KEGG: plm:Plim_2823 hypothetical protein; SPTR: uncharacterized protein; esterase 3202938 10871286 Runsl_2755 Runella slithyformis DSM 19594 esterase YP_004656284.1 3202066 R 761193 CDS YP_004656285.1 338212230 10871287 complement(3203074..3204171) 1 NC_015703.1 PFAM: Caspase domain; KEGG: sli:Slin_3815 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3204171 10871287 Runsl_2756 Runella slithyformis DSM 19594 hypothetical protein YP_004656285.1 3203074 R 761193 CDS YP_004656286.1 338212231 10871288 complement(3204266..3204718) 1 NC_015703.1 hypothetical protein 3204718 10871288 Runsl_2757 Runella slithyformis DSM 19594 hypothetical protein YP_004656286.1 3204266 R 761193 CDS YP_004656287.1 338212232 10871289 complement(3204806..3205171) 1 NC_015703.1 KEGG: bcq:BCQ_0190 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3205171 10871289 Runsl_2758 Runella slithyformis DSM 19594 hypothetical protein YP_004656287.1 3204806 R 761193 CDS YP_004656288.1 338212233 10871290 complement(3205431..3205997) 1 NC_015703.1 KEGG: chu:CHU_2913 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3205997 10871290 Runsl_2759 Runella slithyformis DSM 19594 hypothetical protein YP_004656288.1 3205431 R 761193 CDS YP_004656289.1 338212234 10871291 complement(3206019..3206315) 1 NC_015703.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein; manually curated; hypothetical protein 3206315 10871291 Runsl_2760 Runella slithyformis DSM 19594 hypothetical protein YP_004656289.1 3206019 R 761193 CDS YP_004656290.1 338212235 10871293 complement(3206724..3207089) 1 NC_015703.1 COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154:IPR013149; KEGG: rxy:Rxyl_2398 zinc-binding alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SPTR: Alcohol dehydrogenase, zinc-binding protein; Glyoxalase/bleomycin resistance protein/dioxygenase 3207089 10871293 Runsl_2762 Runella slithyformis DSM 19594 Glyoxalase/bleomycin resistance protein/dioxygenase YP_004656290.1 3206724 R 761193 CDS YP_004656291.1 338212236 10871294 complement(3207138..3208115) 1 NC_015703.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; COGs: COG1764 redox protein regulator of disulfide bond formation; InterPro IPR019953:IPR003718; KEGG: bbe:BBR47_57740 organic hydroperoxide resistance protein; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: Probable organic hydroperoxide resistance protein; TIGRFAM: Peroxiredoxin, organic hydroperoxide resistance-related; NADPH:quinone reductase 3208115 10871294 Runsl_2763 Runella slithyformis DSM 19594 NADPH:quinone reductase YP_004656291.1 3207138 R 761193 CDS YP_004656292.1 338212237 10871295 complement(3208135..3208551) 1 NC_015703.1 PFAM: OsmC-like protein; TIGRFAM: peroxiredoxin, Ohr subfamily; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: bcm:Bcenmc03_6416 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Estradiol 17-beta-dehydrogenase; SPTR: Short-chain dehydrogenase/reductase SDR; Ohr subfamily peroxiredoxin 3208551 10871295 Runsl_2764 Runella slithyformis DSM 19594 Ohr subfamily peroxiredoxin YP_004656292.1 3208135 R 761193 CDS YP_004656293.1 338212238 10871296 complement(3208574..3209467) 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: shg:Sph21_3082 transcriptional regulator, HxlR family; PFAM: Helix-turn-helix, HxlR type; SPTR: Phage integrase site-specific recombinase; estradiol 17-beta-dehydrogenase 3209467 10871296 Runsl_2765 Runella slithyformis DSM 19594 estradiol 17-beta-dehydrogenase YP_004656293.1 3208574 R 761193 CDS YP_004656294.1 338212239 10871297 3209552..3209926 1 NC_015703.1 PFAM: HxlR-like helix-turn-helix; manually curated; HxlR family transcriptional regulator 3209926 10871297 Runsl_2766 Runella slithyformis DSM 19594 HxlR family transcriptional regulator YP_004656294.1 3209552 D 761193 CDS YP_004656295.1 338212240 10871299 complement(3210449..3211756) 1 NC_015703.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: dfe:Dfer_3211 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase; hypothetical protein 3211756 10871299 Runsl_2768 Runella slithyformis DSM 19594 hypothetical protein YP_004656295.1 3210449 R 761193 CDS YP_004656296.1 338212241 10871300 3211999..3213192 1 NC_015703.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006102; KEGG: shg:Sph21_1908 Mannosylglycoprotein endo-beta-mannosidase; PFAM: Glycoside hydrolase 2, immunoglobulin-like beta-sandwich; Glycoside hydrolase 2, carbohydrate-binding; PRIAM: Mannosylglycoprotein endo-beta-mannosidase; SPTR: Glycoside hydrolase; glutamine--scyllo-inositol transaminase 3213192 10871300 Runsl_2769 Runella slithyformis DSM 19594 glutamine--scyllo-inositol transaminase YP_004656296.1 3211999 D 761193 CDS YP_004656297.1 338212242 10871301 3213289..3215964 1 NC_015703.1 PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; KEGG: sli:Slin_6579 hypothetical protein; SPTR: uncharacterized protein; mannosylglycoprotein endo-beta-mannosidase 3215964 10871301 Runsl_2770 Runella slithyformis DSM 19594 mannosylglycoprotein endo-beta-mannosidase YP_004656297.1 3213289 D 761193 CDS YP_004656298.1 338212243 10871302 3216074..3218416 1 NC_015703.1 COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220; KEGG: sti:Sthe_3503 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase; SPTR: uncharacterized protein; hypothetical protein 3218416 10871302 Runsl_2771 Runella slithyformis DSM 19594 hypothetical protein YP_004656298.1 3216074 D 761193 CDS YP_004656299.1 338212244 10871303 3218423..3219331 1 NC_015703.1 PFAM: Dihydrodipicolinate synthetase; Prodigal; manually curated; dihydrodipicolinate synthetase 3219331 10871303 Runsl_2772 Runella slithyformis DSM 19594 dihydrodipicolinate synthetase YP_004656299.1 3218423 D 761193 CDS YP_004656300.1 338212245 10871305 complement(3220230..3221270) 1 NC_015703.1 PFAM: alpha/beta hydrolase fold; KEGG: dfe:Dfer_1870 hypothetical protein; SPTR: uncharacterized protein; alpha/beta hydrolase 3221270 10871305 Runsl_2774 Runella slithyformis DSM 19594 alpha/beta hydrolase YP_004656300.1 3220230 R 761193 CDS YP_004656301.1 338212246 10871306 complement(3221267..3221923) 1 NC_015703.1 COGs: COG2312 Erythromycin esterase homolog; InterPro IPR007815; KEGG: aoe:Clos_1312 erythromycin esterase; PFAM: Erythromycin esterase; SPTR: Erythromycin esterase; hypothetical protein 3221923 10871306 Runsl_2775 Runella slithyformis DSM 19594 hypothetical protein YP_004656301.1 3221267 R 761193 CDS YP_004656302.1 338212247 10871307 complement(3221977..3223314) 1 NC_015703.1 PFAM: Erythromycin esterase; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: fjo:Fjoh_4283 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signaling protein without kinase domain; erythromycin esterase 3223314 10871307 Runsl_2776 Runella slithyformis DSM 19594 erythromycin esterase YP_004656302.1 3221977 R 761193 CDS YP_004656303.1 338212248 10871308 3223336..3224472 1 NC_015703.1 PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_0826 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two-component system response regulator protein; signal transduction histidine kinase 3224472 10871308 Runsl_2777 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004656303.1 3223336 D 761193 CDS YP_004656304.1 338212249 10871309 3224462..3225199 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; Prodigal; manually curated; LytTR family two component transcriptional regulator 3225199 10871309 Runsl_2778 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004656304.1 3224462 D 761193 CDS YP_004656305.1 338212250 10871311 3225969..3227561 1 NC_015703.1 PFAM: Domain of Unknown Function (DUF1080); Domain of unknown function (DUF377); COGs: COG4275 conserved hypothetical protein; InterPro IPR018634:IPR000005:IPR018060; KEGG: dfe:Dfer_2046 transcriptional regulator, AraC family; PFAM: Chromate resistance exported protein; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; hypothetical protein 3227561 10871311 Runsl_2780 Runella slithyformis DSM 19594 hypothetical protein YP_004656305.1 3225969 D 761193 CDS YP_004656306.1 338212251 10871312 3227612..3228469 1 NC_015703.1 PFAM: Chromate resistance exported protein; Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: sli:Slin_2824 hypothetical protein; SPTR: uncharacterized protein; AraC family transcriptional regulator 3228469 10871312 Runsl_2781 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004656306.1 3227612 D 761193 CDS YP_004656307.1 338212252 10871313 3228562..3229095 1 NC_015703.1 KEGG: phe:Phep_2396 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3229095 10871313 Runsl_2782 Runella slithyformis DSM 19594 hypothetical protein YP_004656307.1 3228562 D 761193 CDS YP_004656308.1 338212253 10871314 3229461..3229979 1 NC_015703.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469:IPR001375; KEGG: zpr:ZPR_4589 peptidase S9B dipeptidylpeptidase IV subunit; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; Peptidase S9, prolyl oligopeptidase, catalytic domain; SPTR: Peptidase S9B dipeptidylpeptidase IV subunit; hypothetical protein 3229979 10871314 Runsl_2783 Runella slithyformis DSM 19594 hypothetical protein YP_004656308.1 3229461 D 761193 CDS YP_004656309.1 338212254 10871315 3230141..3232336 1 NC_015703.1 PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region; COGs: COG0252 L-asparaginase/ Glu-tRNAGln amidotransferase subunit D; InterPro IPR004550:IPR006034; KEGG: cao:Celal_4233 asparaginase; PFAM: Asparaginase/glutaminase; PRIAM: Asparaginase; SPTR: Asparaginase; TIGRFAM: L-asparaginase, type II; peptidase S9B dipeptidylpeptidase IV domain-containing protein 3232336 10871315 Runsl_2784 Runella slithyformis DSM 19594 peptidase S9B dipeptidylpeptidase IV domain-containing protein YP_004656309.1 3230141 D 761193 CDS YP_004656310.1 338212255 10871316 3232364..3233416 1 NC_015703.1 PFAM: Asparaginase; TIGRFAM: L-asparaginases, type II; KEGG: sus:Acid_4767 hypothetical protein; SPTR: uncharacterized protein; type II L-asparaginase 3233416 10871316 Runsl_2785 Runella slithyformis DSM 19594 type II L-asparaginase YP_004656310.1 3232364 D 761193 CDS YP_004656311.1 338212256 10871317 3233564..3234637 1 NC_015703.1 PFAM: Protein of unknown function (DUF3500); COGs: COG5616 integral membrane protein; InterPro IPR000005:IPR001440:IPR018060:IPR019734; KEGG: dfe:Dfer_0645 TPR repeat-containing protein; PFAM: Helix-turn-helix, AraC type; Tetratricopeptide TPR-1; PRIAM: Adenylate cyclase; SMART: Helix-turn-helix, AraC domain; Tetratricopeptide repeat; SPTR: TPR repeat-containing protein; hypothetical protein 3234637 10871317 Runsl_2786 Runella slithyformis DSM 19594 hypothetical protein YP_004656311.1 3233564 D 761193 CDS YP_004656312.1 338212257 10871318 3234919..3236670 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR005074:IPR003439:IPR003593; KEGG: sli:Slin_4701 ABC transporter; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; AraC family transcriptional regulator 3236670 10871318 Runsl_2787 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004656312.1 3234919 D 761193 CDS YP_004656313.1 338212258 10871319 3236879..3239071 1 NC_015703.1 PFAM: Peptidase C39 family; ABC transporter; KEGG: fjo:Fjoh_1297 hypothetical protein; SPTR: hemolysin secretion transport system membrane protein; xenobiotic-transporting ATPase 3239071 10871319 Runsl_2788 Runella slithyformis DSM 19594 xenobiotic-transporting ATPase YP_004656313.1 3236879 D 761193 CDS YP_004656314.1 338212259 10871320 3239107..3240387 1 NC_015703.1 InterPro IPR012970:IPR003159:IPR004103; KEGG: phe:Phep_0786 polysaccharide lyase 8; PFAM: Polysaccharide lyase 8, central domain; Polysaccharide lyase 8, N-terminal alpha-helical; Polysaccharide lyase 8, C-terminal; PRIAM: Chondroitin AC lyase; SPTR: uncharacterized protein; hypothetical protein 3240387 10871320 Runsl_2789 Runella slithyformis DSM 19594 hypothetical protein YP_004656314.1 3239107 D 761193 CDS YP_004656315.1 338212260 10871321 3240481..3242643 1 NC_015703.1 PFAM: Polysaccharide lyase 8, N terminal alpha-helical domain; Polysaccharide lyase 8, super-sandwich domain; Polysaccharide lyase 8, C-terminal beta-sandwich domain; Chondroitin AC lyase 3242643 10871321 Runsl_2790 Runella slithyformis DSM 19594 Chondroitin AC lyase YP_004656315.1 3240481 D 761193 CDS YP_004656316.1 338212261 10871322 3242978..3243133 1 NC_015703.1 hypothetical protein 3243133 10871322 Runsl_2791 Runella slithyformis DSM 19594 hypothetical protein YP_004656316.1 3242978 D 761193 CDS YP_004656317.1 338212262 10871323 3243287..3243700 1 NC_015703.1 KEGG: sli:Slin_6085 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3243700 10871323 Runsl_2792 Runella slithyformis DSM 19594 hypothetical protein YP_004656317.1 3243287 D 761193 CDS YP_004656318.1 338212263 10871324 complement(3243926..3244159) 1 NC_015703.1 COGs: COG1609 Transcriptional regulators; InterPro IPR001761:IPR000005:IPR018060; KEGG: dfe:Dfer_4330 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; Periplasmic binding protein/LacI transcriptional regulator; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; hypothetical protein 3244159 10871324 Runsl_2793 Runella slithyformis DSM 19594 hypothetical protein YP_004656318.1 3243926 R 761193 CDS YP_004656319.1 338212264 10871325 complement(3244250..3245413) 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; family; COGs: COG0738 Fucose permease; InterPro IPR011701; KEGG: dfe:Dfer_4329 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; AraC family transcriptional regulator 3245413 10871325 Runsl_2794 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004656319.1 3244250 R 761193 CDS YP_004656320.1 338212265 10871326 complement(3245473..3246726) 1 NC_015703.1 PFAM: Major Facilitator Superfamily; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: sli:Slin_6585 ROK family protein; PFAM: ROK; PRIAM: Glucokinase; SPTR: ROK family protein; major facilitator superfamily protein 3246726 10871326 Runsl_2795 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004656320.1 3245473 R 761193 CDS YP_004656321.1 338212266 10871327 complement(3246912..3247760) 1 NC_015703.1 PFAM: ROK family; COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015883:IPR004867; KEGG: sli:Slin_6586 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; Glycoside hydrolase, family 20, C-terminal; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Beta-N-acetylhexosaminidase; glucokinase 3247760 10871327 Runsl_2796 Runella slithyformis DSM 19594 glucokinase YP_004656321.1 3246912 R 761193 CDS YP_004656322.1 338212267 10871328 complement(3247902..3250481) 1 NC_015703.1 PFAM: carbohydrate binding domain; Glycosyl hydrolase 20, catalytic domain; Glycosyl hydrolase 20, domain 2; Chitobiase/beta-hexosaminidase C-terminal domain; COGs: COG4299 conserved hypothetical protein; InterPro IPR019259; KEGG: sli:Slin_6587 heparan-alpha-glucosaminide N-acetyltransferase; PFAM: Protein of unknown function DUF2261, transmembrane; SPTR: Heparan-alpha-glucosaminide N-acetyltransferase; beta-N-acetylhexosaminidase 3250481 10871328 Runsl_2797 Runella slithyformis DSM 19594 beta-N-acetylhexosaminidase YP_004656322.1 3247902 R 761193 CDS YP_004656323.1 338212268 10871329 3250582..3251679 1 NC_015703.1 PFAM: Protein of unknown function (DUF1624); InterPro IPR004843; KEGG: fbc:FB2170_04120 hypothetical protein; PFAM: Metallophosphoesterase; SPTR: uncharacterized protein; hypothetical protein 3251679 10871329 Runsl_2798 Runella slithyformis DSM 19594 hypothetical protein YP_004656323.1 3250582 D 761193 CDS YP_004656324.1 338212269 10871330 3251793..3252740 1 NC_015703.1 PFAM: Calcineurin-like phosphoesterase; KEGG: dfe:Dfer_4325 hypothetical protein; SPTR: uncharacterized protein; metallophosphoesterase 3252740 10871330 Runsl_2799 Runella slithyformis DSM 19594 metallophosphoesterase YP_004656324.1 3251793 D 761193 CDS YP_004656325.1 338212270 10871331 3253056..3255467 1 NC_015703.1 InterPro IPR004843; KEGG: pbs:Plabr_0120 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; hypothetical protein 3255467 10871331 Runsl_2800 Runella slithyformis DSM 19594 hypothetical protein YP_004656325.1 3253056 D 761193 CDS YP_004656326.1 338212271 10871332 3255712..3257265 1 NC_015703.1 PFAM: Calcineurin-like phosphoesterase; KEGG: ddi:DDB_G0286243 hypothetical protein; SPTR: uncharacterized protein; metallophosphoesterase 3257265 10871332 Runsl_2801 Runella slithyformis DSM 19594 metallophosphoesterase YP_004656326.1 3255712 D 761193 CDS YP_004656327.1 338212272 10871333 complement(3257463..3257741) 1 NC_015703.1 hypothetical protein 3257741 10871333 Runsl_2802 Runella slithyformis DSM 19594 hypothetical protein YP_004656327.1 3257463 R 761193 CDS YP_004656328.1 338212273 10871334 complement(3258064..3258351) 1 NC_015703.1 hypothetical protein 3258351 10871334 Runsl_2803 Runella slithyformis DSM 19594 hypothetical protein YP_004656328.1 3258064 R 761193 CDS YP_004656329.1 338212274 10871335 complement(3258431..3258682) 1 NC_015703.1 hypothetical protein 3258682 10871335 Runsl_2804 Runella slithyformis DSM 19594 hypothetical protein YP_004656329.1 3258431 R 761193 CDS YP_004656330.1 338212275 10871336 complement(3260043..3260312) 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 3260312 10871336 Runsl_2805 Runella slithyformis DSM 19594 hypothetical protein YP_004656330.1 3260043 R 761193 CDS YP_004656331.1 338212276 10871338 3261104..3261877 1 NC_015703.1 PFAM: NIPSNAP; COGs: COG4993 Glucose dehydrogenase; InterPro IPR019551:IPR002372:IPR003088:IPR018391; KEGG: dfe:Dfer_0311 pyrrolo-quinoline quinone; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; Cytochrome c, class I; PRIAM: Quinoprotein glucose dehydrogenase; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Pyrrolo-quinoline quinone; NIPSNAP family containing protein 3261877 10871338 Runsl_2807 Runella slithyformis DSM 19594 NIPSNAP family containing protein YP_004656331.1 3261104 D 761193 CDS YP_004656332.1 338212277 10871339 complement(3261971..3264094) 1 NC_015703.1 PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus; Cytochrome c; PQQ enzyme repeat; InterPro IPR001440:IPR019734; KEGG: dfe:Dfer_2755 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; quinoprotein glucose dehydrogenase 3264094 10871339 Runsl_2808 Runella slithyformis DSM 19594 quinoprotein glucose dehydrogenase YP_004656332.1 3261971 R 761193 CDS YP_004656333.1 338212278 10871340 3264390..3266633 1 NC_015703.1 PFAM: Tetratricopeptide repeat; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: sli:Slin_1742 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; SPTR: Aldehyde dehydrogenase; hypothetical protein 3266633 10871340 Runsl_2809 Runella slithyformis DSM 19594 hypothetical protein YP_004656333.1 3264390 D 761193 CDS YP_004656334.1 338212279 10871341 complement(3266708..3268123) 1 NC_015703.1 PFAM: Aldehyde dehydrogenase; InterPro IPR001387; KEGG: dfe:Dfer_1213 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; aldehyde dehydrogenase 3268123 10871341 Runsl_2810 Runella slithyformis DSM 19594 aldehyde dehydrogenase YP_004656334.1 3266708 R 761193 CDS YP_004656335.1 338212280 10871342 3268337..3269347 1 NC_015703.1 PFAM: Helix-turn-helix; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: coc:Coch_0498 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Estradiol 17-beta-dehydrogenase; SPTR: Short-chain alcohol-related dehydrogenase; helix-turn-helix domain-containing protein 3269347 10871342 Runsl_2811 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004656335.1 3268337 D 761193 CDS YP_004656336.1 338212281 10871343 3269429..3270232 1 NC_015703.1 PFAM: short chain dehydrogenase; KEGG: dfe:Dfer_3623 hypothetical protein; SPTR: uncharacterized protein; estradiol 17-beta-dehydrogenase 3270232 10871343 Runsl_2812 Runella slithyformis DSM 19594 estradiol 17-beta-dehydrogenase YP_004656336.1 3269429 D 761193 CDS YP_004656337.1 338212282 10871344 complement(3270238..3271275) 1 NC_015703.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: chu:CHU_0537 HlyD family multidrug resistance protein; PFAM: Secretion protein HlyD; SPTR: Multidrug resistance protein; HlyD family secretion protein; TIGRFAM: Secretion protein HlyD; hypothetical protein 3271275 10871344 Runsl_2813 Runella slithyformis DSM 19594 hypothetical protein YP_004656337.1 3270238 R 761193 CDS YP_004656338.1 338212283 10871345 3271579..3272745 1 NC_015703.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR004764:IPR001036; KEGG: chu:CHU_0538 AcrB/AcrD family multidrug resistance protein; PFAM: Acriflavin resistance protein; SPTR: AcrB/AcrD family multidrug resistance protein; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; RND family efflux transporter MFP subunit 3272745 10871345 Runsl_2814 Runella slithyformis DSM 19594 RND family efflux transporter MFP subunit YP_004656338.1 3271579 D 761193 CDS YP_004656339.1 338212284 10871346 3272916..3276065 1 NC_015703.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; COGs: COG1538 Outer membrane protein; InterPro IPR010131:IPR003423; KEGG: chu:CHU_0539 outer membrane lipoprotein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 3276065 10871346 Runsl_2815 Runella slithyformis DSM 19594 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_004656339.1 3272916 D 761193 CDS YP_004656340.1 338212285 10871347 3276140..3277576 1 NC_015703.1 PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; KEGG: cpi:Cpin_3252 outer membrane protein; SPTR: Outer membrane protein, OMP85 family; NodT family RND efflux system outer membrane lipoprotein 3277576 10871347 Runsl_2816 Runella slithyformis DSM 19594 NodT family RND efflux system outer membrane lipoprotein YP_004656340.1 3276140 D 761193 CDS YP_004656341.1 338212286 10871348 3277660..3278820 1 NC_015703.1 PFAM: Surface antigen; COGs: COG3104 Dipeptide/tripeptide permease; InterPro IPR005279:IPR000109; KEGG: bth:BT_4385 di-tripeptide ABC transporter; PFAM: Oligopeptide transporter; SPTR: uncharacterized protein; TIGRFAM: Amino acid/peptide transporter; hypothetical protein 3278820 10871348 Runsl_2817 Runella slithyformis DSM 19594 hypothetical protein YP_004656341.1 3277660 D 761193 CDS YP_004656342.1 338212287 10871349 3279245..3280762 1 NC_015703.1 PFAM: POT family; TIGRFAM: amino acid/peptide transporter (Peptide:H+ symporter), bacterial; COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: dfe:Dfer_3731 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; amino acid/peptide transporter 3280762 10871349 Runsl_2818 Runella slithyformis DSM 19594 amino acid/peptide transporter YP_004656342.1 3279245 D 761193 CDS YP_004656343.1 338212288 10871350 3280888..3281466 1 NC_015703.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase; KEGG: sli:Slin_4550 TonB-dependent receptor plug; SPTR: TonB-dependent receptor plug; 5-formyltetrahydrofolate cyclo-ligase 3281466 10871350 Runsl_2819 Runella slithyformis DSM 19594 5-formyltetrahydrofolate cyclo-ligase YP_004656343.1 3280888 D 761193 CDS YP_004656344.1 338212289 10871351 3281527..3284454 1 NC_015703.1 PFAM: MG2 domain; COGs: COG0136 Aspartate-semialdehyde dehydrogenase; InterPro IPR005986:IPR000534:IPR012280; KEGG: sli:Slin_5364 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation region; Semialdehyde dehydrogenase, NAD-binding; PRIAM: Aspartate-semialdehyde dehydrogenase; SPTR: Aspartate-semialdehyde dehydrogenase; TIGRFAM: Aspartate-semialdehyde dehydrogenase, bacterial; hypothetical protein 3284454 10871351 Runsl_2820 Runella slithyformis DSM 19594 hypothetical protein YP_004656344.1 3281527 D 761193 CDS YP_004656345.1 338212290 10871352 3284854..3285864 1 NC_015703.1 PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (peptidoglycan organisms); InterPro IPR005202; KEGG: sur:STAUR_0635 GRAs-like transcription factor; PFAM: GRAS transcription factor; SPTR: GAI protein; aspartate-semialdehyde dehydrogenase 3285864 10871352 Runsl_2821 Runella slithyformis DSM 19594 aspartate-semialdehyde dehydrogenase YP_004656345.1 3284854 D 761193 CDS YP_004656346.1 338212291 10871353 3286121..3287155 1 NC_015703.1 PFAM: GRAS family transcription factor; COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839; KEGG: dtu:Dtur_1122 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/II; PRIAM: Histidinol-phosphate transaminase; SPTR: Histidinol-phosphate aminotransferase; GRAS transcription factor 3287155 10871353 Runsl_2822 Runella slithyformis DSM 19594 GRAS transcription factor YP_004656346.1 3286121 D 761193 CDS YP_004656347.1 338212292 10871354 3287193..3288299 1 NC_015703.1 PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: dfe:Dfer_4878 peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; PRIAM: Membrane alanyl aminopeptidase; SPTR: Peptidase M1 membrane alanine aminopeptidase; histidinol-phosphate transaminase 3288299 10871354 Runsl_2823 Runella slithyformis DSM 19594 histidinol-phosphate transaminase YP_004656347.1 3287193 D 761193 CDS YP_004656348.1 338212293 10871355 3288505..3291060 1 NC_015703.1 PFAM: Peptidase M1; manually curated; alanyl aminopeptidase 3291060 10871355 Runsl_2824 Runella slithyformis DSM 19594 alanyl aminopeptidase YP_004656348.1 3288505 D 761193 CDS YP_004656349.1 338212294 10871359 complement(3293048..3293167) 1 NC_015703.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: sli:Slin_4006 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; hypothetical protein 3293167 10871359 Runsl_2828 Runella slithyformis DSM 19594 hypothetical protein YP_004656349.1 3293048 R 761193 CDS YP_004656350.1 338212295 10871360 complement(3293293..3294321) 1 NC_015703.1 PFAM: OmpA family; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_5120 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; OmpA/MotB domain-containing protein 3294321 10871360 Runsl_2829 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004656350.1 3293293 R 761193 CDS YP_004656351.1 338212296 10871361 complement(3294525..3295556) 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG0591 Na+/proline symporter; InterPro IPR019900:IPR001734; KEGG: dfe:Dfer_3985 SSS sodium solute transporter superfamily; PFAM: Sodium/solute symporter; SPTR: SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup; family 2 glycosyl transferase 3295556 10871361 Runsl_2830 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004656351.1 3294525 R 761193 CDS YP_004656352.1 338212297 10871362 complement(3295635..3297230) 1 NC_015703.1 PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; COGs: COG3836 2 4-dihydroxyhept-2-ene-1 7-dioic acid aldolase; InterPro IPR005000; KEGG: sli:Slin_6606 HpcH/HpaI aldolase; PFAM: HpcH/HpaI aldolase; SPTR: HpcH/HpaI aldolase; sodium solute transporter superfamily protein 3297230 10871362 Runsl_2831 Runella slithyformis DSM 19594 sodium solute transporter superfamily protein YP_004656352.1 3295635 R 761193 CDS YP_004656353.1 338212298 10871363 3297431..3298255 1 NC_015703.1 PFAM: HpcH/HpaI aldolase/citrate lyase; KEGG: sli:Slin_6605 hypothetical protein; SPTR: uncharacterized protein; HpcH/HpaI aldolase 3298255 10871363 Runsl_2832 Runella slithyformis DSM 19594 HpcH/HpaI aldolase YP_004656353.1 3297431 D 761193 CDS YP_004656354.1 338212299 10871364 3298300..3300423 1 NC_015703.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: dfe:Dfer_0546 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein; hypothetical protein 3300423 10871364 Runsl_2833 Runella slithyformis DSM 19594 hypothetical protein YP_004656354.1 3298300 D 761193 CDS YP_004656355.1 338212300 10871365 3300476..3301468 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; InterPro IPR002591; KEGG: dfe:Dfer_3007 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase; oxidoreductase domain-containing protein 3301468 10871365 Runsl_2834 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004656355.1 3300476 D 761193 CDS YP_004656356.1 338212301 10871366 3301559..3303208 1 NC_015703.1 PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase; InterPro IPR004843; KEGG: sli:Slin_6603 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; type I phosphodiesterase/nucleotide pyrophosphatase 3303208 10871366 Runsl_2835 Runella slithyformis DSM 19594 type I phosphodiesterase/nucleotide pyrophosphatase YP_004656356.1 3301559 D 761193 CDS YP_004656357.1 338212302 10871367 3303494..3304879 1 NC_015703.1 PFAM: Calcineurin-like phosphoesterase; metallophosphoesterase 3304879 10871367 Runsl_2836 Runella slithyformis DSM 19594 metallophosphoesterase YP_004656357.1 3303494 D 761193 CDS YP_004656358.1 338212303 10871368 complement(3305435..3305668) 1 NC_015703.1 KEGG: sli:Slin_6157 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3305668 10871368 Runsl_2837 Runella slithyformis DSM 19594 hypothetical protein YP_004656358.1 3305435 R 761193 CDS YP_004656359.1 338212304 10871369 complement(3306341..3306817) 1 NC_015703.1 hypothetical protein 3306817 10871369 Runsl_2838 Runella slithyformis DSM 19594 hypothetical protein YP_004656359.1 3306341 R 761193 CDS YP_004656360.1 338212305 10871370 complement(3307091..3307963) 1 NC_015703.1 COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; KEGG: bfs:BF1083 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3307963 10871370 Runsl_2839 Runella slithyformis DSM 19594 hypothetical protein YP_004656360.1 3307091 R 761193 CDS YP_004656361.1 338212306 10871371 complement(3307980..3309881) 1 NC_015703.1 COGs: COG1282 NAD/NADP transhydrogenase beta subunit; InterPro IPR004003; KEGG: cpi:Cpin_6489 NAD(P)(+) transhydrogenase (AB-specific); PFAM: NAD(P) transhydrogenase, beta subunit; PRIAM: NAD(P)(+) transhydrogenase (AB-specific); SPTR: NAD(P) transhydrogenase subunit beta; hypothetical protein 3309881 10871371 Runsl_2840 Runella slithyformis DSM 19594 hypothetical protein YP_004656361.1 3307980 R 761193 CDS YP_004656362.1 338212307 10871372 complement(3310157..3311560) 1 NC_015703.1 PFAM: NAD(P) transhydrogenase beta subunit; COGs: COG3288 NAD/NADP transhydrogenase alpha subunit; KEGG: cpi:Cpin_6490 pyridine nucleotide transhydrogenase subunit alpha; SPTR: Pyridine nucleotide transhydrogenase subunit alpha; NAD(P)(+) transhydrogenase 3311560 10871372 Runsl_2841 Runella slithyformis DSM 19594 NAD(P)(+) transhydrogenase YP_004656362.1 3310157 R 761193 CDS YP_004656363.1 338212308 10871373 complement(3311718..3312026) 1 NC_015703.1 COGs: COG3288 NAD/NADP transhydrogenase alpha subunit; InterPro IPR007886:IPR007698; KEGG: syp:SYNPCC7002_A0986 nicotinamide nucleotide transhydrogenase, chain alpha, part 1; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal; PRIAM: NAD(P)(+) transhydrogenase (AB-specific); SPTR: NAD(P) transhydrogenase, alpha subunit part 1; pyridine nucleotide transhydrogenase subunit alpha 3312026 10871373 Runsl_2842 Runella slithyformis DSM 19594 pyridine nucleotide transhydrogenase subunit alpha YP_004656363.1 3311718 R 761193 CDS YP_004656364.1 338212309 10871374 complement(3312115..3313248) 1 NC_015703.1 PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: NAD(P) transhydrogenase, alpha subunit; COGs: COG1312 D-mannonate dehydratase; HAMAP: Mannonate dehydratase; InterPro IPR004628; KEGG: dfe:Dfer_4123 mannonate dehydratase; PFAM: Mannonate dehydratase; PRIAM: Mannonate dehydratase; SPTR: Mannonate dehydratase 1; TIGRFAM: Mannonate dehydratase; NAD(P)(+) transhydrogenase 3313248 10871374 Runsl_2843 Runella slithyformis DSM 19594 NAD(P)(+) transhydrogenase YP_004656364.1 3312115 R 761193 CDS YP_004656365.1 338212310 10871375 3313630..3314823 1 NC_015703.1 PFAM: D-mannonate dehydratase (UxuA); TIGRFAM: mannonate dehydratase; InterPro IPR005151; KEGG: cpi:Cpin_6359 peptidase S41; PFAM: Peptidase S41; SPTR: Peptidase S41; mannonate dehydratase 3314823 10871375 Runsl_2844 Runella slithyformis DSM 19594 mannonate dehydratase YP_004656365.1 3313630 D 761193 CDS YP_004656366.1 338212311 10871376 complement(3314980..3316398) 1 NC_015703.1 PFAM: Peptidase S41; peptidase S41 3316398 10871376 Runsl_2845 Runella slithyformis DSM 19594 peptidase S41 YP_004656366.1 3314980 R 761193 CDS YP_004656367.1 338212312 10871377 3316669..3317022 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 3317022 10871377 Runsl_2846 Runella slithyformis DSM 19594 hypothetical protein YP_004656367.1 3316669 D 761193 CDS YP_004656368.1 338212313 10871379 3317706..3318035 1 NC_015703.1 KEGG: chu:CHU_2575 two-component response regulator; SPTR: Two-component system response regulator protein; hypothetical protein 3318035 10871379 Runsl_2848 Runella slithyformis DSM 19594 hypothetical protein YP_004656368.1 3317706 D 761193 CDS YP_004656369.1 338212314 10871380 3318292..3318543 1 NC_015703.1 COGs: COG1220 ATP-dependent protease HslVU (ClpYQ) ATPase subunit; HAMAP: ATP-dependent hsl protease ATP-binding subunit hslU; InterPro IPR004491:IPR013093:IPR019489:IPR003593; KEGG: sli:Slin_1628 heat shock protein HslVU, ATPase HslU; PFAM: ATPase associated with various cellular activities, AAA-2; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent protease ATPase subunit HslU; TIGRFAM: Heat shock protein HslU; two-component response regulator 3318543 10871380 Runsl_2849 Runella slithyformis DSM 19594 two-component response regulator YP_004656369.1 3318292 D 761193 CDS YP_004656370.1 338212315 10871381 complement(3318714..3320153) 1 NC_015703.1 PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ATPase associated with various cellular activities (AAA); TIGRFAM: ATP-dependent protease HslVU, ATPase subunit; KEGG: sli:Slin_5184 hypothetical protein; SPTR: uncharacterized protein; ATP-dependent protease ATP-binding subunit HslU 3320153 10871381 Runsl_2850 Runella slithyformis DSM 19594 ATP-dependent protease ATP-binding subunit HslU YP_004656370.1 3318714 R 761193 CDS YP_004656371.1 338212316 10871382 3320249..3320536 1 NC_015703.1 KEGG: sli:Slin_4386 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3320536 10871382 Runsl_2851 Runella slithyformis DSM 19594 hypothetical protein YP_004656371.1 3320249 D 761193 CDS YP_004656372.1 338212317 10871383 3320611..3321069 1 NC_015703.1 KEGG: chu:CHU_3424 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3321069 10871383 Runsl_2852 Runella slithyformis DSM 19594 hypothetical protein YP_004656372.1 3320611 D 761193 CDS YP_004656373.1 338212318 10871384 3321157..3321408 1 NC_015703.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254:IPR001478; KEGG: sli:Slin_2676 HtrA2 peptidase; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF; SPTR: HtrA2 peptidase; hypothetical protein 3321408 10871384 Runsl_2853 Runella slithyformis DSM 19594 hypothetical protein YP_004656373.1 3321157 D 761193 CDS YP_004656374.1 338212319 10871385 complement(3321480..3322490) 1 NC_015703.1 PFAM: Trypsin; KEGG: sli:Slin_2675 hypothetical protein; SPTR: uncharacterized protein; HtrA2 peptidase 3322490 10871385 Runsl_2854 Runella slithyformis DSM 19594 HtrA2 peptidase YP_004656374.1 3321480 R 761193 CDS YP_004656375.1 338212320 10871386 3322566..3322748 1 NC_015703.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rbi:RB2501_10772 arylsulphatase A; PFAM: Sulfatase; PRIAM: N-acetylgalactosamine-6-sulfatase; SPTR: Arylsulphatase A; hypothetical protein 3322748 10871386 Runsl_2855 Runella slithyformis DSM 19594 hypothetical protein YP_004656375.1 3322566 D 761193 CDS YP_004656376.1 338212321 10871387 3322808..3324148 1 NC_015703.1 PFAM: Sulfatase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rbi:RB2501_10737 N-acetylglucosamine-6-sulfatase; PFAM: Sulfatase; PRIAM: N-acetylglucosamine-6-sulfatase; SPTR: N-acetylglucosamine-6-sulfatase; N-acetylgalactosamine-6-sulfatase 3324148 10871387 Runsl_2856 Runella slithyformis DSM 19594 N-acetylgalactosamine-6-sulfatase YP_004656376.1 3322808 D 761193 CDS YP_004656377.1 338212322 10871388 3324226..3325755 1 NC_015703.1 PFAM: Sulfatase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: psn:Pedsa_1812 sulfatase; PFAM: Sulfatase; PRIAM: N-sulfoglucosamine sulfohydrolase; SPTR: Heparan N-sulfatase; N-acetylglucosamine-6-sulfatase 3325755 10871388 Runsl_2857 Runella slithyformis DSM 19594 N-acetylglucosamine-6-sulfatase YP_004656377.1 3324226 D 761193 CDS YP_004656378.1 338212323 10871389 3325780..3327192 1 NC_015703.1 PFAM: Sulfatase; COGs: COG1624 conserved hypothetical protein; InterPro IPR014046:IPR003390; KEGG: sli:Slin_2673 hypothetical protein; PFAM: DNA integrity scanning protein, DisA, N-terminal; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00159; N-sulfoglucosamine sulfohydrolase 3327192 10871389 Runsl_2858 Runella slithyformis DSM 19594 N-sulfoglucosamine sulfohydrolase YP_004656378.1 3325780 D 761193 CDS YP_004656379.1 338212324 10871390 complement(3327198..3327995) 1 NC_015703.1 PFAM: DisA bacterial checkpoint controller nucleotide-binding; TIGRFAM: TIGR00159 family protein; COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: dfe:Dfer_4069 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein; SPTR: SNARE associated Golgi protein; hypothetical protein 3327995 10871390 Runsl_2859 Runella slithyformis DSM 19594 hypothetical protein YP_004656379.1 3327198 R 761193 CDS YP_004656380.1 338212325 10871391 complement(3328046..3328684) 1 NC_015703.1 PFAM: SNARE associated Golgi protein; COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_4068 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; hypothetical protein 3328684 10871391 Runsl_2860 Runella slithyformis DSM 19594 hypothetical protein YP_004656380.1 3328046 R 761193 CDS YP_004656381.1 338212326 10871392 complement(3328794..3330662) 1 NC_015703.1 PFAM: ABC transporter; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: cpi:Cpin_0010 LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SPTR: uncharacterized protein; ABC transporter 3330662 10871392 Runsl_2861 Runella slithyformis DSM 19594 ABC transporter YP_004656381.1 3328794 R 761193 CDS YP_004656382.1 338212327 10871393 complement(3330780..3331427) 1 NC_015703.1 PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; COGs: COG4585 Signal transduction histidine kinase; KEGG: cpi:Cpin_6820 histidine kinase; SPTR: Two-component sensor histidine kinase; manually curated; LuxR family transcriptional regulator 3331427 10871393 Runsl_2862 Runella slithyformis DSM 19594 LuxR family transcriptional regulator YP_004656382.1 3330780 R 761193 CDS YP_004656383.1 338212328 10871394 complement(3331534..3332184) 1 NC_015703.1 PFAM: Histidine kinase; COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594; KEGG: cpi:Cpin_6820 histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: Histidine kinase; signal transduction histidine kinase 3332184 10871394 Runsl_2863 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004656383.1 3331534 R 761193 CDS YP_004656384.1 338212329 10871395 complement(3332298..3333104) 1 NC_015703.1 PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; KEGG: cpi:Cpin_6819 hypothetical protein; SPTR: uncharacterized protein; signal transduction histidine kinase 3333104 10871395 Runsl_2864 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004656384.1 3332298 R 761193 CDS YP_004656385.1 338212330 10871396 complement(3333074..3333691) 1 NC_015703.1 hypothetical protein 3333691 10871396 Runsl_2865 Runella slithyformis DSM 19594 hypothetical protein YP_004656385.1 3333074 R 761193 CDS YP_004656386.1 338212331 10871397 complement(3333729..3334499) 1 NC_015703.1 InterPro IPR011579; KEGG: fba:FIC_01835 ATPase; SPTR: Archaeal ATPase, fused to C-terminal DUF234 domain; hypothetical protein 3334499 10871397 Runsl_2866 Runella slithyformis DSM 19594 hypothetical protein YP_004656386.1 3333729 R 761193 CDS YP_004656387.1 338212332 10871398 3335346..3336770 1 NC_015703.1 PFAM: Archaeal ATPase; COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439:IPR003593; KEGG: lby:Lbys_3306 ABC transporter related protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; ATPase 3336770 10871398 Runsl_2867 Runella slithyformis DSM 19594 ATPase YP_004656387.1 3335346 D 761193 CDS YP_004656388.1 338212333 10871399 3336863..3338503 1 NC_015703.1 PFAM: ABC transporter; COGs: COG0174 Glutamine synthetase; InterPro IPR008147:IPR008146; KEGG: sli:Slin_2432 glutamate--ammonia ligase; PFAM: Glutamine synthetase, catalytic region; Glutamine synthetase, beta-Grasp; PRIAM: Glutamate--ammonia ligase; SPTR: Glutamine synthetase; ABC transporter 3338503 10871399 Runsl_2868 Runella slithyformis DSM 19594 ABC transporter YP_004656388.1 3336863 D 761193 CDS YP_004656389.1 338212334 10871400 3339074..3340099 1 NC_015703.1 PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; InterPro IPR008894; KEGG: dfe:Dfer_3416 WxcM domain protein; PFAM: WxcM-like, C-terminal; SPTR: WxcM domain protein; glutamate--ammonia ligase 3340099 10871400 Runsl_2869 Runella slithyformis DSM 19594 glutamate--ammonia ligase YP_004656389.1 3339074 D 761193 CDS YP_004656390.1 338212335 10871401 3340407..3340772 1 NC_015703.1 PFAM: WxcM-like, C-terminal; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: dfe:Dfer_3415 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: dTDP-6-deoxy-D-xylo-hex-3-ulose aminase; WxcM-like domain-containing protein 3340772 10871401 Runsl_2870 Runella slithyformis DSM 19594 WxcM-like domain-containing protein YP_004656390.1 3340407 D 761193 CDS YP_004656391.1 338212336 10871402 3340769..3341896 1 NC_015703.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_3414 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; glutamine--scyllo-inositol transaminase 3341896 10871402 Runsl_2871 Runella slithyformis DSM 19594 glutamine--scyllo-inositol transaminase YP_004656391.1 3340769 D 761193 CDS YP_004656392.1 338212337 10871403 3341865..3342782 1 NC_015703.1 PFAM: Glycosyl transferase 2; InterPro IPR013217; KEGG: sli:Slin_0292 MCP methyltransferase, CheR-type; PFAM: Methyltransferase type 12; SPTR: MCP methyltransferase, CheR-type; family 2 glycosyl transferase 3342782 10871403 Runsl_2872 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004656392.1 3341865 D 761193 CDS YP_004656393.1 338212338 10871404 3342820..3343596 1 NC_015703.1 PFAM: Methyltransferase domain; KEGG: dfe:Dfer_5350 hypothetical protein; SPTR: uncharacterized protein; type 12 methyltransferase 3343596 10871404 Runsl_2873 Runella slithyformis DSM 19594 type 12 methyltransferase YP_004656393.1 3342820 D 761193 CDS YP_004656394.1 338212339 10871405 3343606..3345171 1 NC_015703.1 COGs: COG1363 Cellulase M and related protein; InterPro IPR008007; KEGG: sli:Slin_1139 peptidase M42 family protein; PFAM: Peptidase M42; PRIAM: Cellulase; SPTR: Peptidase M42 family protein; hypothetical protein 3345171 10871405 Runsl_2874 Runella slithyformis DSM 19594 hypothetical protein YP_004656394.1 3343606 D 761193 CDS YP_004656395.1 338212340 10871406 3345175..3346245 1 NC_015703.1 PFAM: M42 glutamyl aminopeptidase; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601; KEGG: sli:Slin_4878 PKD domain containing protein; PFAM: PKD; SMART: PKD; SPTR: PKD domain containing protein; cellulase 3346245 10871406 Runsl_2875 Runella slithyformis DSM 19594 cellulase YP_004656395.1 3345175 D 761193 CDS YP_004656396.1 338212341 10871407 complement(3346319..3349039) 1 NC_015703.1 PFAM: PKD domain; PKD domain-containing protein 3349039 10871407 Runsl_2876 Runella slithyformis DSM 19594 PKD domain-containing protein YP_004656396.1 3346319 R 761193 CDS YP_004656397.1 338212342 10871408 complement(3349148..3349336) 1 NC_015703.1 COGs: COG4805 conserved hypothetical protein; InterPro IPR010281; KEGG: cpi:Cpin_5570 hypothetical protein; PFAM: Protein of unknown function DUF885, bacterial; SPTR: uncharacterized protein; hypothetical protein 3349336 10871408 Runsl_2877 Runella slithyformis DSM 19594 hypothetical protein YP_004656397.1 3349148 R 761193 CDS YP_004656398.1 338212343 10871409 3349484..3351229 1 NC_015703.1 PFAM: Bacterial protein of unknown function (DUF885); COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: sli:Slin_6458 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; hypothetical protein 3351229 10871409 Runsl_2878 Runella slithyformis DSM 19594 hypothetical protein YP_004656398.1 3349484 D 761193 CDS YP_004656399.1 338212344 10871410 complement(3351337..3352641) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG1106 ATPase; KEGG: cyn:Cyan7425_2148 hypothetical protein; SPTR: Abortive infection protein; oxidoreductase domain-containing protein 3352641 10871410 Runsl_2879 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004656399.1 3351337 R 761193 CDS YP_004656400.1 338212345 10871411 3352825..3354141 1 NC_015703.1 KEGG: sez:Sez_0212 abortive phage resistance protein; SPTR: uncharacterized protein; hypothetical protein 3354141 10871411 Runsl_2880 Runella slithyformis DSM 19594 hypothetical protein YP_004656400.1 3352825 D 761193 CDS YP_004656401.1 338212346 10871412 3354145..3354777 1 NC_015703.1 InterPro IPR002559; KEGG: app:CAP2UW1_1881 transposase IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase IS4 family protein; abortive phage resistance protein 3354777 10871412 Runsl_2881 Runella slithyformis DSM 19594 abortive phage resistance protein YP_004656401.1 3354145 D 761193 CDS YP_004656402.1 338212347 10871413 3354888..3355904 1 NC_015703.1 PFAM: Transposase DDE domain; KEGG: sli:Slin_0249 hypothetical protein; SPTR: uncharacterized protein; transposase IS4 family protein 3355904 10871413 Runsl_2882 Runella slithyformis DSM 19594 transposase IS4 family protein YP_004656402.1 3354888 D 761193 CDS YP_004656403.1 338212348 10871414 complement(3356013..3357380) 1 NC_015703.1 PFAM: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; InterPro IPR000014:IPR013767:IPR001610; KEGG: sli:Slin_4536 PAS/PAC sensor protein; PFAM: PAS fold; SMART: PAC motif; SPTR: uncharacterized protein; TIGRFAM: PAS; hypothetical protein 3357380 10871414 Runsl_2883 Runella slithyformis DSM 19594 hypothetical protein YP_004656403.1 3356013 R 761193 CDS YP_004656404.1 338212349 10871415 complement(3357659..3358183) 1 NC_015703.1 PFAM: PAS fold; TIGRFAM: PAS domain S-box; COGs: COG1858 Cytochrome c peroxidase; InterPro IPR004852; KEGG: dfe:Dfer_3388 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; PRIAM: Cytochrome-c peroxidase; SPTR: Cytochrome-c peroxidase; PAS sensor protein 3358183 10871415 Runsl_2884 Runella slithyformis DSM 19594 PAS sensor protein YP_004656404.1 3357659 R 761193 CDS YP_004656405.1 338212350 10871416 complement(3358282..3359364) 1 NC_015703.1 PFAM: Cytochrome c; Di-haem cytochrome c peroxidase; KEGG: sli:Slin_3490 hypothetical protein; SPTR: uncharacterized protein; cytochrome-c peroxidase 3359364 10871416 Runsl_2885 Runella slithyformis DSM 19594 cytochrome-c peroxidase YP_004656405.1 3358282 R 761193 CDS YP_004656406.1 338212351 10871417 complement(3359375..3360187) 1 NC_015703.1 COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: dfe:Dfer_5149 transcriptional regulator, PadR-like family; PFAM: Transcriptional regulator PadR N-terminal-like; SPTR: Transcriptional regulator, PadR-like family; hypothetical protein 3360187 10871417 Runsl_2886 Runella slithyformis DSM 19594 hypothetical protein YP_004656406.1 3359375 R 761193 CDS YP_004656407.1 338212352 10871418 3360393..3360743 1 NC_015703.1 PFAM: Transcriptional regulator PadR-like family; KEGG: sli:Slin_2309 hypothetical protein; SPTR: uncharacterized protein; PadR-like family transcriptional regulator 3360743 10871418 Runsl_2887 Runella slithyformis DSM 19594 PadR-like family transcriptional regulator YP_004656407.1 3360393 D 761193 CDS YP_004656408.1 338212353 10871419 3360825..3361349 1 NC_015703.1 InterPro IPR006260:IPR003538; KEGG: sli:Slin_5090 TonB family protein; PFAM: Gram-negative bacterial tonB protein; SPTR: TonB family protein; TIGRFAM: TonB, C-terminal; hypothetical protein 3361349 10871419 Runsl_2888 Runella slithyformis DSM 19594 hypothetical protein YP_004656408.1 3360825 D 761193 CDS YP_004656409.1 338212354 10871420 3361716..3362561 1 NC_015703.1 PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; TonB family protein 3362561 10871420 Runsl_2889 Runella slithyformis DSM 19594 TonB family protein YP_004656409.1 3361716 D 761193 CDS YP_004656410.1 338212355 10871421 complement(3362639..3363328) 1 NC_015703.1 COGs: COG0322 Nuclease subunit of the excinuclease complex; HAMAP: UvrABC system protein C; InterPro IPR004791:IPR000305:IPR001162:IPR000445; KEGG: dfe:Dfer_5031 excinuclease ABC, C subunit; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; Helix-hairpin-helix motif; SMART: Excinuclease ABC, C subunit, N-terminal; SPTR: UvrABC system protein C; TIGRFAM: Excinuclease ABC, C subunit; hypothetical protein 3363328 10871421 Runsl_2890 Runella slithyformis DSM 19594 hypothetical protein YP_004656410.1 3362639 R 761193 CDS YP_004656411.1 338212356 10871422 3363579..3365384 1 NC_015703.1 PFAM: UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit; KEGG: sli:Slin_5833 hypothetical protein; SPTR: uncharacterized protein; UvrABC system protein C 3365384 10871422 Runsl_2891 Runella slithyformis DSM 19594 UvrABC system protein C YP_004656411.1 3363579 D 761193 CDS YP_004656412.1 338212357 10871423 complement(3365508..3365855) 1 NC_015703.1 PFAM: Protein of unknown function (DUF2847); TIGRFAM: bacillithiol system protein YtxJ; COGs: COG1519 3-deoxy-D-manno-octulosonic-acid transferase; InterPro IPR007507; KEGG: sli:Slin_5831 3-deoxy-D-manno-octulosonic-acid transferase domain protein; PFAM: Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal; SPTR: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; hypothetical protein 3365855 10871423 Runsl_2892 Runella slithyformis DSM 19594 hypothetical protein YP_004656412.1 3365508 R 761193 CDS YP_004656413.1 338212358 10871424 3365972..3367342 1 NC_015703.1 PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); KEGG: chu:CHU_3203 hypothetical protein; SPTR: uncharacterized protein; 3-deoxy-D-manno-octulosonic-acid transferase 3367342 10871424 Runsl_2893 Runella slithyformis DSM 19594 3-deoxy-D-manno-octulosonic-acid transferase YP_004656413.1 3365972 D 761193 CDS YP_004656414.1 338212359 10871425 complement(3367586..3368107) 1 NC_015703.1 PFAM: Transposase IS200 like; KEGG: sli:Slin_0263 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3368107 10871425 Runsl_2894 Runella slithyformis DSM 19594 hypothetical protein YP_004656414.1 3367586 R 761193 CDS YP_004656415.1 338212360 10871426 complement(3368287..3370923) 1 NC_015703.1 hypothetical protein 3370923 10871426 Runsl_2895 Runella slithyformis DSM 19594 hypothetical protein YP_004656415.1 3368287 R 761193 CDS YP_004656416.1 338212361 10871427 complement(3371106..3371231) 1 NC_015703.1 InterPro IPR002934; KEGG: sli:Slin_2850 DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase; SPTR: DNA polymerase beta domain protein region; hypothetical protein 3371231 10871427 Runsl_2896 Runella slithyformis DSM 19594 hypothetical protein YP_004656416.1 3371106 R 761193 CDS YP_004656417.1 338212362 10871428 complement(3371228..3371551) 1 NC_015703.1 PFAM: Nucleotidyltransferase domain; COGs: COG4320 conserved hypothetical protein; InterPro IPR018721; KEGG: bxe:Bxe_B2085 hypothetical protein; PFAM: Protein of unknown function DUF2252; SPTR: uncharacterized protein; DNA polymerase beta domain-containing protein 3371551 10871428 Runsl_2897 Runella slithyformis DSM 19594 DNA polymerase beta domain-containing protein YP_004656417.1 3371228 R 761193 CDS YP_004656418.1 338212363 10871429 complement(3371678..3372871) 1 NC_015703.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2252); COGs: COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); InterPro IPR000667; KEGG: dfe:Dfer_3782 D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; SPTR:D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D- alanine-endopeptidase; hypothetical protein 3372871 10871429 Runsl_2898 Runella slithyformis DSM 19594 hypothetical protein YP_004656418.1 3371678 R 761193 CDS YP_004656419.1 338212364 10871430 complement(3372927..3374255) 1 NC_015703.1 PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family; COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: dfe:Dfer_3558 polyprenyl synthetase; PFAM: Polyprenyl synthetase; SPTR: Polyprenyl synthetase; peptidase S13 D-Ala-D-Ala carboxypeptidase C 3374255 10871430 Runsl_2899 Runella slithyformis DSM 19594 peptidase S13 D-Ala-D-Ala carboxypeptidase C YP_004656419.1 3372927 R 761193 CDS YP_004656420.1 338212365 10871431 3374508..3375485 1 NC_015703.1 PFAM: Polyprenyl synthetase; COGs: COG3622 Hydroxypyruvate isomerase; InterPro IPR006311:IPR012307; KEGG: sli:Slin_3461 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; polyprenyl synthetase 3375485 10871431 Runsl_2900 Runella slithyformis DSM 19594 polyprenyl synthetase YP_004656420.1 3374508 D 761193 CDS YP_004656421.1 338212366 10871432 3375651..3376544 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; xylose isomerase domain-containing protein 3376544 10871432 Runsl_2901 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004656421.1 3375651 D 761193 CDS YP_004656422.1 338212367 10871433 3376520..3376999 1 NC_015703.1 COGs: COG3448 CBS-domain-containing membrane protein; InterPro IPR007065; KEGG: chu:CHU_1999 CBS domain-containing protein; PFAM: HPP; SPTR: CBS-domain-containing membrane protein; hypothetical protein 3376999 10871433 Runsl_2902 Runella slithyformis DSM 19594 hypothetical protein YP_004656422.1 3376520 D 761193 CDS YP_004656423.1 338212368 10871434 3376944..3377573 1 NC_015703.1 PFAM: HPP family; HPP family protein 3377573 10871434 Runsl_2903 Runella slithyformis DSM 19594 HPP family protein YP_004656423.1 3376944 D 761193 CDS YP_004656424.1 338212369 10871435 complement(3377623..3378354) 1 NC_015703.1 PFAM: Bacterial RNA polymerase, alpha chain C terminal domain; COGs: COG0114 Fumarase; HAMAP: Fumarate hydratase class II; InterPro IPR005677:IPR000362:IPR018951; KEGG: dfe:Dfer_2816 fumarate hydratase, class II; PFAM: Fumarate lyase; Fumarase C, C-terminal; PRIAM: Fumarate hydratase; SPTR: Fumarate hydratase, class II; TIGRFAM: Fumarate hydratase, class II; hypothetical protein 3378354 10871435 Runsl_2904 Runella slithyformis DSM 19594 hypothetical protein YP_004656424.1 3377623 R 761193 CDS YP_004656425.1 338212370 10871436 complement(3378511..3379932) 1 NC_015703.1 PFAM: Fumarase C C-terminus; Lyase; TIGRFAM: fumarate hydratase, class II; class II fumarate hydratase 3379932 10871436 Runsl_2905 Runella slithyformis DSM 19594 class II fumarate hydratase YP_004656425.1 3378511 R 761193 CDS YP_004656426.1 338212371 10871437 3380141..3380248 1 NC_015703.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: cpi:Cpin_3073 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; hypothetical protein 3380248 10871437 Runsl_2906 Runella slithyformis DSM 19594 hypothetical protein YP_004656426.1 3380141 D 761193 CDS YP_004656427.1 338212372 10871438 3380818..3382032 1 NC_015703.1 PFAM: Major Facilitator Superfamily; InterPro IPR007168; KEGG: dfe:Dfer_3554 phage shock protein C, PspC; PFAM: PspC; SPTR: Phage shock protein C, PspC; major facilitator superfamily protein 3382032 10871438 Runsl_2907 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004656427.1 3380818 D 761193 CDS YP_004656428.1 338212373 10871439 complement(3382207..3382434) 1 NC_015703.1 PFAM: PspC domain; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076; KEGG: dfe:Dfer_0330 oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Oxidoreductase; PspC domain-containing protein 3382434 10871439 Runsl_2908 Runella slithyformis DSM 19594 PspC domain-containing protein YP_004656428.1 3382207 R 761193 CDS YP_004656429.1 338212374 10871440 3382788..3384500 1 NC_015703.1 PFAM: GMC oxidoreductase; COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: vpe:Varpa_2806 beta-ig-h3/fasciclin; PFAM: FAS1 domain; SMART: FAS1 domain; SPTR: Beta-Ig-H3/fasciclin; FAD dependent oxidoreductase 3384500 10871440 Runsl_2909 Runella slithyformis DSM 19594 FAD dependent oxidoreductase YP_004656429.1 3382788 D 761193 CDS YP_004656430.1 338212375 10871441 3384779..3385297 1 NC_015703.1 PFAM: Fasciclin domain; COGs: COG0520 Selenocysteine lyase; InterPro IPR000192; KEGG: sli:Slin_6132 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Isopenicillin-N epimerase; SPTR: Aminotransferase class V; beta-Ig-H3/fasciclin 3385297 10871441 Runsl_2910 Runella slithyformis DSM 19594 beta-Ig-H3/fasciclin YP_004656430.1 3384779 D 761193 CDS YP_004656431.1 338212376 10871442 3385450..3386706 1 NC_015703.1 PFAM: Aminotransferase class-V; COGs: COG1487 nucleic acid-binding protein contains PIN domain; InterPro IPR002716; KEGG: psn:Pedsa_2332 PilT protein domain protein; PFAM: PilT protein, N-terminal; SPTR: PilT protein domain protein; isopenicillin-N epimerase 3386706 10871442 Runsl_2911 Runella slithyformis DSM 19594 isopenicillin-N epimerase YP_004656431.1 3385450 D 761193 CDS YP_004656432.1 338212377 10871443 complement(3386793..3387185) 1 NC_015703.1 PFAM: PIN domain; twitching motility protein PilT 3387185 10871443 Runsl_2912 Runella slithyformis DSM 19594 twitching motility protein PilT YP_004656432.1 3386793 R 761193 CDS YP_004656433.1 338212378 10871444 complement(3387164..3387403) 1 NC_015703.1 COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: sli:Slin_6549 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28; hypothetical protein 3387403 10871444 Runsl_2913 Runella slithyformis DSM 19594 hypothetical protein YP_004656433.1 3387164 R 761193 CDS YP_004656434.1 338212379 10871445 complement(3387534..3389174) 1 NC_015703.1 PFAM: Peptidase M28; KEGG: bhy:BHWA1_01800 hypothetical protein; SPTR: uncharacterized protein; peptidase M28 3389174 10871445 Runsl_2914 Runella slithyformis DSM 19594 peptidase M28 YP_004656434.1 3387534 R 761193 CDS YP_004656435.1 338212380 10871446 complement(3389238..3389843) 1 NC_015703.1 COGs: COG1106 ATPase; InterPro IPR003395; KEGG: bpo:BP951000_0493 ATPase; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: Predicted ATPase; hypothetical protein 3389843 10871446 Runsl_2915 Runella slithyformis DSM 19594 hypothetical protein YP_004656435.1 3389238 R 761193 CDS YP_004656436.1 338212381 10871447 complement(3389848..3390882) 1 NC_015703.1 COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545:IPR001650:IPR014001; KEGG: sli:Slin_5691 DEAD/DEAH box helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein; SMC domain-containing protein 3390882 10871447 Runsl_2916 Runella slithyformis DSM 19594 SMC domain-containing protein YP_004656436.1 3389848 R 761193 CDS YP_004656437.1 338212382 10871448 3391193..3392527 1 NC_015703.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; InterPro IPR019734; KEGG: sli:Slin_5690 hypothetical protein; SPTR: Tetratricopeptide repeat protein; DEAD/DEAH box helicase 3392527 10871448 Runsl_2917 Runella slithyformis DSM 19594 DEAD/DEAH box helicase YP_004656437.1 3391193 D 761193 CDS YP_004656438.1 338212383 10871449 3392591..3393361 1 NC_015703.1 InterPro IPR000182; KEGG: sli:Slin_1013 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; hypothetical protein 3393361 10871449 Runsl_2918 Runella slithyformis DSM 19594 hypothetical protein YP_004656438.1 3392591 D 761193 CDS YP_004656439.1 338212384 10871450 3393413..3393832 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: dfe:Dfer_0190 protein of unknown function DUF140; PFAM: Protein of unknown function DUF140; SPTR: uncharacterized protein; N-acetyltransferase GCN5 3393832 10871450 Runsl_2919 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004656439.1 3393413 D 761193 CDS YP_004656440.1 338212385 10871451 3394022..3394807 1 NC_015703.1 PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein; COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_0189 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; hypothetical protein 3394807 10871451 Runsl_2920 Runella slithyformis DSM 19594 hypothetical protein YP_004656440.1 3394022 D 761193 CDS YP_004656441.1 338212386 10871452 3394819..3395577 1 NC_015703.1 PFAM: ABC transporter; COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: dfe:Dfer_0188 mammalian cell entry related domain protein; PFAM: Mammalian cell entry related; SPTR: Mammalian cell entry related domain protein; sulfate-transporting ATPase 3395577 10871452 Runsl_2921 Runella slithyformis DSM 19594 sulfate-transporting ATPase YP_004656441.1 3394819 D 761193 CDS YP_004656442.1 338212387 10871453 3395579..3396622 1 NC_015703.1 PFAM: mce related protein; COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155; KEGG: sli:Slin_3318 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; PRIAM: NADPH dehydrogenase; SPTR: NADH:flavin oxidoreductase/NADH oxidase; mammalian cell entry domain-containing protein 3396622 10871453 Runsl_2922 Runella slithyformis DSM 19594 mammalian cell entry domain-containing protein YP_004656442.1 3395579 D 761193 CDS YP_004656443.1 338212388 10871454 3396703..3397773 1 NC_015703.1 PFAM: NADH:flavin oxidoreductase / NADH oxidase; COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: fba:FIC_01253 UspA; PFAM: UspA; SPTR: UspA; NADPH dehydrogenase 3397773 10871454 Runsl_2923 Runella slithyformis DSM 19594 NADPH dehydrogenase YP_004656443.1 3396703 D 761193 CDS YP_004656444.1 338212389 10871455 3397955..3398857 1 NC_015703.1 PFAM: Universal stress protein family; InterPro IPR004013; KEGG: sli:Slin_3513 hypothetical protein; PFAM: PHP, C-terminal; SPTR: uncharacterized protein; UspA domain-containing protein 3398857 10871455 Runsl_2924 Runella slithyformis DSM 19594 UspA domain-containing protein YP_004656444.1 3397955 D 761193 CDS YP_004656445.1 338212390 10871456 3398966..3400894 1 NC_015703.1 PFAM: PHP domain; InterPro IPR001387; KEGG: pph:Ppha_1597 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix domain protein; PHP domain-containing protein 3400894 10871456 Runsl_2925 Runella slithyformis DSM 19594 PHP domain-containing protein YP_004656445.1 3398966 D 761193 CDS YP_004656446.1 338212391 10871457 complement(3401000..3401365) 1 NC_015703.1 PFAM: Helix-turn-helix; COGs: COG4680 conserved hypothetical protein; InterPro IPR018669; KEGG: pph:Ppha_1596 hypothetical protein; PFAM: Protein of unknown function DUF2136; SPTR: uncharacterized protein; helix-turn-helix domain-containing protein 3401365 10871457 Runsl_2926 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004656446.1 3401000 R 761193 CDS YP_004656447.1 338212392 10871458 complement(3401362..3401673) 1 NC_015703.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2136); KEGG: cpi:Cpin_5477 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3401673 10871458 Runsl_2927 Runella slithyformis DSM 19594 hypothetical protein YP_004656447.1 3401362 R 761193 CDS YP_004656448.1 338212393 10871459 complement(3401843..3402670) 1 NC_015703.1 PFAM: Protein of unknown function (DUF2911); KEGG: psn:Pedsa_0379 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3402670 10871459 Runsl_2928 Runella slithyformis DSM 19594 hypothetical protein YP_004656448.1 3401843 R 761193 CDS YP_004656449.1 338212394 10871460 3402917..3404725 1 NC_015703.1 InterPro IPR014870; KEGG: sli:Slin_6191 hypothetical protein; PFAM: Domain of unknown function DUF1793; SPTR: uncharacterized protein; hypothetical protein 3404725 10871460 Runsl_2929 Runella slithyformis DSM 19594 hypothetical protein YP_004656449.1 3402917 D 761193 CDS YP_004656450.1 338212395 10871461 complement(3404799..3407306) 1 NC_015703.1 PFAM: Domain of unknown function (DUF1793); COGs: COG3508 Homogentisate 1 2-dioxygenase; InterPro IPR005708; KEGG: lby:Lbys_3502 homogentisate 12-dioxygenase; PFAM: Homogentisate 1,2-dioxygenase; SPTR: Homogentisate 12-dioxygenase; hypothetical protein 3407306 10871461 Runsl_2930 Runella slithyformis DSM 19594 hypothetical protein YP_004656450.1 3404799 R 761193 CDS YP_004656451.1 338212396 10871462 3407626..3408783 1 NC_015703.1 PFAM: homogentisate 1,2-dioxygenase; TIGRFAM: homogentisate 1,2-dioxygenase; COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR005959:IPR015377:IPR002529; KEGG: lby:Lbys_3503 fumarylacetoacetase; PFAM: Fumarylacetoacetase, N-terminal; Fumarylacetoacetase, C-terminal-like; PRIAM: Fumarylacetoacetase; SPTR: Fumarylacetoacetase; TIGRFAM: Fumarylacetoacetase; homogentisate 12-dioxygenase 3408783 10871462 Runsl_2931 Runella slithyformis DSM 19594 homogentisate 12-dioxygenase YP_004656451.1 3407626 D 761193 CDS YP_004656452.1 338212397 10871463 3408828..3410096 1 NC_015703.1 PFAM: Domain of unknown function (DUF1969); Fumarylacetoacetate (FAA) hydrolase; TIGRFAM: fumarylacetoacetase; COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR002563; KEGG: lby:Lbys_3504 flavin reductase domain protein fmN-binding protein; PFAM: Flavin reductase-like, FMN-binding; SPTR: Flavin reductase domain protein FMN-binding protein; fumarylacetoacetase 3410096 10871463 Runsl_2932 Runella slithyformis DSM 19594 fumarylacetoacetase YP_004656452.1 3408828 D 761193 CDS YP_004656453.1 338212398 10871464 3410108..3410968 1 NC_015703.1 PFAM: Flavin reductase like domain; InterPro IPR001087; KEGG: dfe:Dfer_4894 hypothetical protein; PFAM: Lipase, GDSL; SPTR: uncharacterized protein; flavin reductase domain-containing FMN-binding protein 3410968 10871464 Runsl_2933 Runella slithyformis DSM 19594 flavin reductase domain-containing FMN-binding protein YP_004656453.1 3410108 D 761193 CDS YP_004656454.1 338212399 10871465 complement(3411032..3411745) 1 NC_015703.1 PFAM: GDSL-like Lipase/Acylhydrolase; G-D-S-L family lipolytic protein 3411745 10871465 Runsl_2934 Runella slithyformis DSM 19594 G-D-S-L family lipolytic protein YP_004656454.1 3411032 R 761193 CDS YP_004656455.1 338212400 10871466 complement(3411879..3412241) 1 NC_015703.1 KEGG: sli:Slin_4495 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3412241 10871466 Runsl_2935 Runella slithyformis DSM 19594 hypothetical protein YP_004656455.1 3411879 R 761193 CDS YP_004656456.1 338212401 10871467 complement(3412490..3413866) 1 NC_015703.1 KEGG: sli:Slin_2497 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3413866 10871467 Runsl_2936 Runella slithyformis DSM 19594 hypothetical protein YP_004656456.1 3412490 R 761193 CDS YP_004656457.1 338212402 10871468 complement(3414092..3414823) 1 NC_015703.1 KEGG: sli:Slin_2509 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3414823 10871468 Runsl_2937 Runella slithyformis DSM 19594 hypothetical protein YP_004656457.1 3414092 R 761193 CDS YP_004656458.1 338212403 10871469 complement(3414905..3415411) 1 NC_015703.1 COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: sli:Slin_2531 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YceI family protein; hypothetical protein 3415411 10871469 Runsl_2938 Runella slithyformis DSM 19594 hypothetical protein YP_004656458.1 3414905 R 761193 CDS YP_004656459.1 338212404 10871470 complement(3415408..3415941) 1 NC_015703.1 PFAM: YceI-like domain; KEGG: sli:Slin_2530 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3415941 10871470 Runsl_2939 Runella slithyformis DSM 19594 hypothetical protein YP_004656459.1 3415408 R 761193 CDS YP_004656460.1 338212405 10871471 complement(3415966..3416682) 1 NC_015703.1 InterPro IPR019545; KEGG: sli:Slin_2510 electron transfer DM13; PFAM: Electron transfer DM13; SPTR: Electron transfer DM13; hypothetical protein 3416682 10871471 Runsl_2940 Runella slithyformis DSM 19594 hypothetical protein YP_004656460.1 3415966 R 761193 CDS YP_004656461.1 338212406 10871472 complement(3416767..3417213) 1 NC_015703.1 PFAM: Electron transfer DM13; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595:IPR001808; KEGG: fps:FP0703 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SPTR: Probable transcriptional regulatory protein, Crp/Fnr family; electron transfer DM13 3417213 10871472 Runsl_2941 Runella slithyformis DSM 19594 electron transfer DM13 YP_004656461.1 3416767 R 761193 CDS YP_004656462.1 338212407 10871473 complement(3417295..3417996) 1 NC_015703.1 PFAM: Cyclic nucleotide-binding domain; KEGG: sli:Slin_2496 hypothetical protein; SPTR: uncharacterized protein; Crp/Fnr family transcriptional regulator 3417996 10871473 Runsl_2942 Runella slithyformis DSM 19594 Crp/Fnr family transcriptional regulator YP_004656462.1 3417295 R 761193 CDS YP_004656463.1 338212408 10871474 complement(3418070..3419113) 1 NC_015703.1 KEGG: sli:Slin_2514 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3419113 10871474 Runsl_2943 Runella slithyformis DSM 19594 hypothetical protein YP_004656463.1 3418070 R 761193 CDS YP_004656464.1 338212409 10871475 complement(3419175..3419576) 1 NC_015703.1 KEGG: sli:Slin_2513 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3419576 10871475 Runsl_2944 Runella slithyformis DSM 19594 hypothetical protein YP_004656464.1 3419175 R 761193 CDS YP_004656465.1 338212410 10871476 complement(3419615..3420118) 1 NC_015703.1 COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: sli:Slin_1341 esterase; PFAM: esterase; SPTR: esterase; hypothetical protein 3420118 10871476 Runsl_2945 Runella slithyformis DSM 19594 hypothetical protein YP_004656465.1 3419615 R 761193 CDS YP_004656466.1 338212411 10871477 complement(3420221..3421156) 1 NC_015703.1 PFAM: esterase; COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR000774:IPR001179; KEGG: dfe:Dfer_4633 peptidylprolyl isomerase FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal; Peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; esterase 3421156 10871477 Runsl_2946 Runella slithyformis DSM 19594 esterase YP_004656466.1 3420221 R 761193 CDS YP_004656467.1 338212412 10871478 3421303..3422070 1 NC_015703.1 PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; COGs: COG0793 Periplasmic protease; InterPro IPR004447:IPR001478:IPR005151; KEGG: dfe:Dfer_4634 carboxyl-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; PRIAM: C-terminal processing peptidase; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: Carboxyl-terminal protease; TIGRFAM: Peptidase S41A, C-terminal protease; FKBP-type peptidylprolyl isomerase 3422070 10871478 Runsl_2947 Runella slithyformis DSM 19594 FKBP-type peptidylprolyl isomerase YP_004656467.1 3421303 D 761193 CDS YP_004656468.1 338212413 10871479 3422153..3424246 1 NC_015703.1 PFAM: C-terminal domain of tail specific protease (DUF3340); Peptidase S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); COGs: COG3411 Ferredoxin; KEGG: chu:CHU_0705 ferrodoxin; SPTR: Ferrodoxin; carboxyl-terminal protease 3424246 10871479 Runsl_2948 Runella slithyformis DSM 19594 carboxyl-terminal protease YP_004656468.1 3422153 D 761193 CDS YP_004656469.1 338212414 10871480 3424345..3424650 1 NC_015703.1 PFAM: Sucrase/ferredoxin-like; COGs: COG2252 Permease; InterPro IPR006043; KEGG: sli:Slin_0224 xanthine/uracil/vitamin C permease; PFAM: Xanthine/uracil/vitamin C permease; SPTR: Xanthine/uracil/vitamin C permease; ferrodoxin 3424650 10871480 Runsl_2949 Runella slithyformis DSM 19594 ferrodoxin YP_004656469.1 3424345 D 761193 CDS YP_004656470.1 338212415 10871481 3424800..3426131 1 NC_015703.1 PFAM: Permease; COGs: COG2115 Xylose isomerase; HAMAP: Xylose isomerase; InterPro IPR013452:IPR012307:IPR001998; KEGG: cpi:Cpin_1929 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; PRIAM: Xylose isomerase; SPTR: Xylose isomerase; TIGRFAM: Xylose isomerase, bacterial type; xanthine/uracil/vitamin C permease 3426131 10871481 Runsl_2950 Runella slithyformis DSM 19594 xanthine/uracil/vitamin C permease YP_004656470.1 3424800 D 761193 CDS YP_004656471.1 338212416 10871482 complement(3426256..3427584) 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: xylose isomerase; COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220; KEGG: dfe:Dfer_3986 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase; SPTR: Dihydrodipicolinate synthetase; manually curated; xylose isomerase 3427584 10871482 Runsl_2951 Runella slithyformis DSM 19594 xylose isomerase YP_004656471.1 3426256 R 761193 CDS YP_004656472.1 338212417 10871483 3427883..3428824 1 NC_015703.1 PFAM: Dihydrodipicolinate synthetase; COGs: COG3533 conserved hypothetical protein; InterPro IPR012878; KEGG: pdi:BDI_3335 hypothetical protein; PFAM: Protein of unknown function DUF1680; SPTR: uncharacterized protein; dihydrodipicolinate synthetase 3428824 10871483 Runsl_2952 Runella slithyformis DSM 19594 dihydrodipicolinate synthetase YP_004656472.1 3427883 D 761193 CDS YP_004656473.1 338212418 10871484 3428936..3430792 1 NC_015703.1 PFAM: glycosyl hydrolase of unknown function (DUF1680); COGs: COG1297 membrane protein; InterPro IPR004813:IPR004814; KEGG: sli:Slin_5704 oligopeptide transporter OPT family; PFAM: Oligopeptide transporter OPT superfamily; SPTR: Oligopeptide transporter, OPT family; TIGRFAM: Oligopeptide transporter OPT; Oligopeptide transporter OPT superfamily; hypothetical protein 3430792 10871484 Runsl_2953 Runella slithyformis DSM 19594 hypothetical protein YP_004656473.1 3428936 D 761193 CDS YP_004656474.1 338212419 10871485 3430865..3432904 1 NC_015703.1 PFAM: OPT oligopeptide transporter protein; TIGRFAM: oligopeptide transporter, OPT family; oligopeptide transporters, OPT superfamily; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: sli:Slin_6008 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; oligopeptide transporter 3432904 10871485 Runsl_2954 Runella slithyformis DSM 19594 oligopeptide transporter YP_004656474.1 3430865 D 761193 CDS YP_004656475.1 338212420 10871486 complement(3432989..3436051) 1 NC_015703.1 PFAM: AcrB/AcrD/AcrF family; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sli:Slin_6009 efflux transporter RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; acriflavin resistance protein 3436051 10871486 Runsl_2955 Runella slithyformis DSM 19594 acriflavin resistance protein YP_004656475.1 3432989 R 761193 CDS YP_004656476.1 338212421 10871487 complement(3436065..3437105) 1 NC_015703.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_6010 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; RND family efflux transporter MFP subunit 3437105 10871487 Runsl_2956 Runella slithyformis DSM 19594 RND family efflux transporter MFP subunit YP_004656476.1 3436065 R 761193 CDS YP_004656477.1 338212422 10871488 complement(3437155..3438504) 1 NC_015703.1 PFAM: Outer membrane efflux protein; KEGG: zpr:ZPR_3965 hypothetical protein; SPTR: Membrane protein; outer membrane efflux protein 3438504 10871488 Runsl_2957 Runella slithyformis DSM 19594 outer membrane efflux protein YP_004656477.1 3437155 R 761193 CDS YP_004656478.1 338212423 10871489 complement(3438548..3438898) 1 NC_015703.1 COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: lby:Lbys_2690 transcriptional regulator, TetR family; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; hypothetical protein 3438898 10871489 Runsl_2958 Runella slithyformis DSM 19594 hypothetical protein YP_004656478.1 3438548 R 761193 CDS YP_004656479.1 338212424 10871490 complement(3438971..3439648) 1 NC_015703.1 PFAM: Bacterial regulatory proteins, tetR family; COGs: COG1403 Restriction endonuclease; InterPro IPR002711:IPR003615; KEGG: sli:Slin_5662 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: HNH endonuclease; TetR family transcriptional regulator 3439648 10871490 Runsl_2959 Runella slithyformis DSM 19594 TetR family transcriptional regulator YP_004656479.1 3438971 R 761193 CDS YP_004656480.1 338212425 10871491 3439881..3440393 1 NC_015703.1 PFAM: HNH endonuclease; COGs: COG0539 Ribosomal protein S1; InterPro IPR003029; KEGG: sli:Slin_5663 RNA binding S1 domain protein; PFAM: Ribosomal protein S1, RNA binding domain; SPTR: RNA binding S1 domain protein; HNH endonuclease 3440393 10871491 Runsl_2960 Runella slithyformis DSM 19594 HNH endonuclease YP_004656480.1 3439881 D 761193 CDS YP_004656481.1 338212426 10871492 3440523..3442340 1 NC_015703.1 PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1; RNA binding S1 domain-containing protein 3442340 10871492 Runsl_2961 Runella slithyformis DSM 19594 RNA binding S1 domain-containing protein YP_004656481.1 3440523 D 761193 CDS YP_004656482.1 338212427 10871494 3442773..3443999 1 NC_015703.1 PFAM: Class III cytochrome C family; Cytochrome c; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR006311; KEGG: dfe:Dfer_3476 molybdopterin oxidoreductase, iron-sulfur binding subunit; SPTR: Molybdopterin oxidoreductase, iron-sulfur binding subunit; cytochrome c class I 3443999 10871494 Runsl_2962 Runella slithyformis DSM 19594 cytochrome c class I YP_004656482.1 3442773 D 761193 CDS YP_004656483.1 338212428 10871495 3444025..3447138 1 NC_015703.1 PFAM: Molydopterin dinucleotide binding domain; COGs: COG5557 Polysulphide reductase; InterPro IPR005614; KEGG: sli:Slin_5666 polysulphide reductase NrfD; PFAM: Polysulphide reductase, NrfD; SPTR: Polysulphide reductase NrfD; molybdopterin oxidoreductase, iron-sulfur binding subunit 3447138 10871495 Runsl_2963 Runella slithyformis DSM 19594 molybdopterin oxidoreductase, iron-sulfur binding subunit YP_004656483.1 3444025 D 761193 CDS YP_004656484.1 338212429 10871496 3447236..3448663 1 NC_015703.1 PFAM: Polysulphide reductase, NrfD; KEGG: dfe:Dfer_3474 quinol:cytochrome c oxidoreductase membrane protein; SPTR: Quinol:cytochrome c oxidoreductase membrane protein; polysulfide reductase NrfD 3448663 10871496 Runsl_2964 Runella slithyformis DSM 19594 polysulfide reductase NrfD YP_004656484.1 3447236 D 761193 CDS YP_004656485.1 338212430 10871497 3448738..3449265 1 NC_015703.1 PFAM: Protein of unknown function (DUF3341); InterPro IPR003088; KEGG: dfe:Dfer_3473 cytochrome c family protein; PFAM: Cytochrome c, class I; SPTR: Cytochrome c family protein; quinol:cytochrome c oxidoreductase membrane protein 3449265 10871497 Runsl_2965 Runella slithyformis DSM 19594 quinol:cytochrome c oxidoreductase membrane protein YP_004656485.1 3448738 D 761193 CDS YP_004656486.1 338212431 10871498 3449281..3449871 1 NC_015703.1 PFAM: Cytochrome c; KEGG: sli:Slin_5669 hypothetical protein; SPTR: uncharacterized protein; cytochrome c class I 3449871 10871498 Runsl_2966 Runella slithyformis DSM 19594 cytochrome c class I YP_004656486.1 3449281 D 761193 CDS YP_004656487.1 338212432 10871499 3449993..3451303 1 NC_015703.1 COGs: COG1622 Heme/copper-type cytochrome/quinol oxidase subunit 2; InterPro IPR011759:IPR002429; KEGG: sli:Slin_5670 cytochrome c oxidase subunit II; PFAM: Cytochrome c oxidase subunit II C-terminal; Cytochrome C oxidase subunit II, transmembrane region; SPTR: Cytochrome c oxidase subunit 2; hypothetical protein 3451303 10871499 Runsl_2967 Runella slithyformis DSM 19594 hypothetical protein YP_004656487.1 3449993 D 761193 CDS YP_004656488.1 338212433 10871500 3451334..3452455 1 NC_015703.1 PFAM: Cytochrome C oxidase subunit II, periplasmic domain; Cytochrome C oxidase subunit II, transmembrane domain; COGs: COG0843 Heme/copper-type cytochrome/quinol oxidase subunit 1; InterPro IPR000883; KEGG: dfe:Dfer_3470 cytochrome-c oxidase; PFAM: Cytochrome c oxidase, subunit I; SPTR: Cytochrome-c oxidase; cytochrome c oxidase subunit II 3452455 10871500 Runsl_2968 Runella slithyformis DSM 19594 cytochrome c oxidase subunit II YP_004656488.1 3451334 D 761193 CDS YP_004656489.1 338212434 10871501 3452488..3454368 1 NC_015703.1 PFAM: Cytochrome C and Quinol oxidase polypeptide I; COGs: COG1612 Uncharacterized protein required for cytochrome oxidase assembly; InterPro IPR003780; KEGG: dfe:Dfer_3469 cytochrome oxidase assembly; PFAM: Cytochrome oxidase assembly; SPTR: Cytochrome oxidase assembly; cytochrome c oxidase subunit I 3454368 10871501 Runsl_2969 Runella slithyformis DSM 19594 cytochrome c oxidase subunit I YP_004656489.1 3452488 D 761193 CDS YP_004656490.1 338212435 10871502 3454346..3455368 1 NC_015703.1 PFAM: Cytochrome oxidase assembly protein; COGs: COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor); HAMAP: Protohaem IX farnesyltransferase; InterPro IPR006369:IPR000537; KEGG: dfe:Dfer_3468 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; SPTR: Protoheme IX farnesyltransferase; TIGRFAM: Protohaem IX farnesyltransferase; cytochrome oxidase assembly 3455368 10871502 Runsl_2970 Runella slithyformis DSM 19594 cytochrome oxidase assembly YP_004656490.1 3454346 D 761193 CDS YP_004656491.1 338212436 10871503 3455370..3456245 1 NC_015703.1 PFAM: UbiA prenyltransferase; TIGRFAM: protoheme IX farnesyltransferase; COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: dfe:Dfer_3467 cytochrome c oxidase subunit III; PFAM: Cytochrome c oxidase, subunit III; SPTR: Cytochrome c oxidase subunit III; protoheme IX farnesyltransferase 3456245 10871503 Runsl_2971 Runella slithyformis DSM 19594 protoheme IX farnesyltransferase YP_004656491.1 3455370 D 761193 CDS YP_004656492.1 338212437 10871504 3456254..3456838 1 NC_015703.1 PFAM: Cytochrome c oxidase subunit III; COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: dfe:Dfer_3466 cytochrome c oxidase subunit III; PFAM: Cytochrome c oxidase, subunit III; SPTR: Cytochrome c oxidase subunit III; cytochrome c oxidase subunit III 3456838 10871504 Runsl_2972 Runella slithyformis DSM 19594 cytochrome c oxidase subunit III YP_004656492.1 3456254 D 761193 CDS YP_004656493.1 338212438 10871505 3456883..3457644 1 NC_015703.1 PFAM: Cytochrome c oxidase subunit III; KEGG: dfe:Dfer_3465 hypothetical protein; SPTR: uncharacterized protein; cytochrome c oxidase subunit III 3457644 10871505 Runsl_2973 Runella slithyformis DSM 19594 cytochrome c oxidase subunit III YP_004656493.1 3456883 D 761193 CDS YP_004656494.1 338212439 10871506 3457731..3458051 1 NC_015703.1 KEGG: sli:Slin_5677 electron transporter SCO1/SenC; SPTR: Electron transport protein SCO1/SenC; hypothetical protein 3458051 10871506 Runsl_2974 Runella slithyformis DSM 19594 hypothetical protein YP_004656494.1 3457731 D 761193 CDS YP_004656495.1 338212440 10871507 3458115..3458639 1 NC_015703.1 COGs: COG2322 membrane protein; InterPro IPR007352; KEGG: dfe:Dfer_3463 protein of unknown function DUF420; PFAM: Protein of unknown function DUF420; SPTR: uncharacterized protein; electron transporter SCO1/SenC 3458639 10871507 Runsl_2975 Runella slithyformis DSM 19594 electron transporter SCO1/SenC YP_004656495.1 3458115 D 761193 CDS YP_004656496.1 338212441 10871508 3458647..3459189 1 NC_015703.1 PFAM: Predicted membrane protein (DUF2306); Protein of unknown function (DUF420); KEGG: dfe:Dfer_3462 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3459189 10871508 Runsl_2976 Runella slithyformis DSM 19594 hypothetical protein YP_004656496.1 3458647 D 761193 CDS YP_004656497.1 338212442 10871509 3459197..3459478 1 NC_015703.1 COGs: COG2890 Methylase of polypeptide chain release factors; InterPro IPR004556:IPR019874:IPR013216; KEGG: dfe:Dfer_4319 modification methylase, HemK family; PFAM: Methyltransferase type 11; SPTR: Modification methylase, HemK family; TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; hypothetical protein 3459478 10871509 Runsl_2977 Runella slithyformis DSM 19594 hypothetical protein YP_004656497.1 3459197 D 761193 CDS YP_004656498.1 338212443 10871510 3459565..3460419 1 NC_015703.1 PFAM: Methyltransferase small domain; TIGRFAM: HemK family methylases; protein-(glutamine-N5) methyltransferase, release factor-specific; KEGG: sli:Slin_5314 hypothetical protein; SPTR: uncharacterized protein; protein-(glutamine-N5) methyltransferase 3460419 10871510 Runsl_2978 Runella slithyformis DSM 19594 protein-(glutamine-N5) methyltransferase YP_004656498.1 3459565 D 761193 CDS YP_004656499.1 338212444 10871511 3460740..3461456 1 NC_015703.1 InterPro IPR002696; KEGG: sli:Slin_5313 hypothetical protein; PFAM: Protein of unknown function DUF37; SPTR: uncharacterized protein; hypothetical protein 3461456 10871511 Runsl_2979 Runella slithyformis DSM 19594 hypothetical protein YP_004656499.1 3460740 D 761193 CDS YP_004656500.1 338212445 10871512 3461453..3461902 1 NC_015703.1 PFAM: Domain of unknown function DUF37; KEGG: sli:Slin_5312 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3461902 10871512 Runsl_2980 Runella slithyformis DSM 19594 hypothetical protein YP_004656500.1 3461453 D 761193 CDS YP_004656501.1 338212446 10871513 3461902..3462771 1 NC_015703.1 PFAM: TM2 domain; KEGG: mtt:Ftrac_3260 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3462771 10871513 Runsl_2981 Runella slithyformis DSM 19594 hypothetical protein YP_004656501.1 3461902 D 761193 CDS YP_004656502.1 338212447 10871514 3462716..3463600 1 NC_015703.1 KEGG: sli:Slin_5310 hypothetical protein; SPTR: TM2 domain containing protein; hypothetical protein 3463600 10871514 Runsl_2982 Runella slithyformis DSM 19594 hypothetical protein YP_004656502.1 3462716 D 761193 CDS YP_004656503.1 338212448 10871515 complement(3463635..3464087) 1 NC_015703.1 PFAM: TM2 domain; KEGG: sli:Slin_5316 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3464087 10871515 Runsl_2983 Runella slithyformis DSM 19594 hypothetical protein YP_004656503.1 3463635 R 761193 CDS YP_004656504.1 338212449 10871516 complement(3464170..3464691) 1 NC_015703.1 COGs: COG0283 Cytidylate kinase; HAMAP: Cytidylate kinase; InterPro IPR003136:IPR011994; KEGG: dfe:Dfer_5748 cytidylate kinase; PFAM: Cytidylate kinase region; SPTR: Cytidylate kinase; TIGRFAM: Cytidylate kinase; hypothetical protein 3464691 10871516 Runsl_2984 Runella slithyformis DSM 19594 hypothetical protein YP_004656504.1 3464170 R 761193 CDS YP_004656505.1 338212450 10871517 3464889..3465662 1 NC_015703.1 PFAM: Cytidylate kinase; TIGRFAM: cytidylate kinase; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: sli:Slin_3588 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase; cytidylate kinase 3465662 10871517 Runsl_2985 Runella slithyformis DSM 19594 cytidylate kinase YP_004656505.1 3464889 D 761193 CDS YP_004656506.1 338212451 10871518 3465659..3466729 1 NC_015703.1 PFAM: FAD dependent oxidoreductase; KEGG: dfe:Dfer_5750 surface antigen (D15); SPTR: Surface antigen (D15); FAD dependent oxidoreductase 3466729 10871518 Runsl_2986 Runella slithyformis DSM 19594 FAD dependent oxidoreductase YP_004656506.1 3465659 D 761193 CDS YP_004656507.1 338212452 10871519 3466749..3470042 1 NC_015703.1 surface antigen (D15) 3470042 10871519 Runsl_2987 Runella slithyformis DSM 19594 surface antigen (D15) YP_004656507.1 3466749 D 761193 CDS YP_004656508.1 338212453 10871520 complement(3470664..3470837) 1 NC_015703.1 InterPro IPR001434:IPR008454; KEGG: sli:Slin_3586 hypothetical protein; PFAM: Protein of unknown function DUF11; Collagen-binding surface protein Cna-like, B region; SPTR: Conserved repeat domain protein; TIGRFAM: Protein of unknown function DUF11; hypothetical protein 3470837 10871520 Runsl_2988 Runella slithyformis DSM 19594 hypothetical protein YP_004656508.1 3470664 R 761193 CDS YP_004656509.1 338212454 10871521 3470876..3481474 1 NC_015703.1 PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain; InterPro IPR019861; KEGG: sli:Slin_3585 hypothetical protein; SPTR: membrane protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; hypothetical protein 3481474 10871521 Runsl_2989 Runella slithyformis DSM 19594 hypothetical protein YP_004656509.1 3470876 D 761193 CDS YP_004656510.1 338212455 10871522 3481480..3482487 1 NC_015703.1 PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_3584 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein; hypothetical protein 3482487 10871522 Runsl_2990 Runella slithyformis DSM 19594 hypothetical protein YP_004656510.1 3481480 D 761193 CDS YP_004656511.1 338212456 10871523 3482583..3484952 1 NC_015703.1 PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG4315 conserved hypothetical protein; InterPro IPR005297; KEGG: dfe:Dfer_3560 secreted repeat of unknown function; SPTR: uncharacterized protein; OmpA/MotB domain-containing protein 3484952 10871523 Runsl_2991 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004656511.1 3482583 D 761193 CDS YP_004656512.1 338212457 10871524 3485159..3485986 1 NC_015703.1 PFAM: Secreted repeat of unknown function; hypothetical protein 3485986 10871524 Runsl_2992 Runella slithyformis DSM 19594 hypothetical protein YP_004656512.1 3485159 D 761193 CDS YP_004656513.1 338212458 10871525 3486237..3486443 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 3486443 10871525 Runsl_2993 Runella slithyformis DSM 19594 hypothetical protein YP_004656513.1 3486237 D 761193 CDS YP_004656514.1 338212459 10871528 complement(3487995..3488849) 1 NC_015703.1 PFAM: Transposase DDE domain; COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated; transposase IS4 family protein 3488849 10871528 Runsl_2996 Runella slithyformis DSM 19594 transposase IS4 family protein YP_004656514.1 3487995 R 761193 CDS YP_004656515.1 338212460 10871529 complement(join(3488902..3489447,3489449..3489913)) 1 NC_015703.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; Prodigal; manually curated; transposase 3489913 10871529 Runsl_2997 Runella slithyformis DSM 19594 transposase YP_004656515.1 3488902 R 761193 CDS YP_004656516.1 338212461 10871531 3492412..3493734 1 NC_015703.1 secretion protein HlyD family protein 3493734 10871531 Runsl_2999 Runella slithyformis DSM 19594 secretion protein HlyD family protein YP_004656516.1 3492412 D 761193 CDS YP_004656517.1 338212462 10871532 3493854..3494120 1 NC_015703.1 KEGG: bmq:BMQ_2169 beta-galactosidase; SPTR: Beta-galactosidase; hypothetical protein 3494120 10871532 Runsl_3000 Runella slithyformis DSM 19594 hypothetical protein YP_004656517.1 3493854 D 761193 CDS YP_004656518.1 338212463 10871533 3494211..3495917 1 NC_015703.1 InterPro IPR019861; KEGG: dfe:Dfer_5751 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; hypothetical protein 3495917 10871533 Runsl_3001 Runella slithyformis DSM 19594 hypothetical protein YP_004656518.1 3494211 D 761193 CDS YP_004656519.1 338212464 10871534 3496158..3497066 1 NC_015703.1 PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein; COGs: COG0567 2-oxoglutarate dehydrogenase complex dehydrogenase (E1); InterPro IPR011603:IPR001017:IPR005475; KEGG: lby:Lbys_3488 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component; PRIAM: Oxoglutarate dehydrogenase (succinyl-transferring); SPTR: 2-oxoglutarate dehydrogenase, E1 subunit; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; hypothetical protein 3497066 10871534 Runsl_3002 Runella slithyformis DSM 19594 hypothetical protein YP_004656519.1 3496158 D 761193 CDS YP_004656520.1 338212465 10871535 3497152..3499926 1 NC_015703.1 PFAM: Dehydrogenase E1 component; Transketolase, pyrimidine binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR006255:IPR000089:IPR004167:IPR001078; KEGG: sli:Slin_5028 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; PRIAM: Dihydrolipoyllysine-residue succinyltransferase; SPTR: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; TIGRFAM: Dihydrolipoamide succinyltransferase; 2-oxoglutarate dehydrogenase E1 3499926 10871535 Runsl_3003 Runella slithyformis DSM 19594 2-oxoglutarate dehydrogenase E1 YP_004656520.1 3497152 D 761193 CDS YP_004656521.1 338212466 10871536 3500026..3501618 1 NC_015703.1 PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR006258:IPR013027:IPR004099; KEGG: sli:Slin_6035 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; PRIAM: Dihydrolipoyl dehydrogenase; SPTR: Dihydrolipoyl dehydrogenase; TIGRFAM: Dihydrolipoamide dehydrogenase; 2-oxoglutarate dehydrogenase E2 3501618 10871536 Runsl_3004 Runella slithyformis DSM 19594 2-oxoglutarate dehydrogenase E2 YP_004656521.1 3500026 D 761193 CDS YP_004656522.1 338212467 10871537 3501737..3503140 1 NC_015703.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase; COGs: COG4268 McrBC 5-methylcytosine restriction system component; InterPro IPR019292; KEGG: sli:Slin_2471 5-methylcytosine restriction system component-like protein; PFAM: 5-methylcytosine restriction system component-like protein; SPTR: 5-methylcytosine restriction system component-like protein; dihydrolipoamide dehydrogenase 3503140 10871537 Runsl_3005 Runella slithyformis DSM 19594 dihydrolipoamide dehydrogenase YP_004656522.1 3501737 D 761193 CDS YP_004656523.1 338212468 10871538 complement(3503185..3504456) 1 NC_015703.1 PFAM: McrBC 5-methylcytosine restriction system component; HAMAP: Uncharacterised protein family UPF0090, bacteria; InterPro IPR003728:IPR020790; KEGG: lby:Lbys_1583 hypothetical protein; PFAM: Uncharacterised protein family UPF0090; SPTR: Ribosome maturation factor rimP; 5-methylcytosine restriction system component-like protein 3504456 10871538 Runsl_3006 Runella slithyformis DSM 19594 5-methylcytosine restriction system component-like protein YP_004656523.1 3503185 R 761193 CDS YP_004656524.1 338212469 10871539 3504570..3505037 1 NC_015703.1 PFAM: Uncharacterised BCR, YhbC family COG0779; LSM domain; COGs: COG0195 Transcription elongation factor; InterPro IPR010213:IPR013735:IPR004087; KEGG: sli:Slin_1214 NusA antitermination factor; PFAM: Transcription factor NusA, N-terminal; SPTR: NusA antitermination factor; TIGRFAM: Transcription termination factor NusA; ribosome maturation factor rimP 3505037 10871539 Runsl_3007 Runella slithyformis DSM 19594 ribosome maturation factor rimP YP_004656524.1 3504570 D 761193 CDS YP_004656525.1 338212470 10871540 3505175..3506419 1 NC_015703.1 PFAM: NusA N-terminal domain; TIGRFAM: transcription termination factor NusA; COGs: COG0532 Translation initiation factor 2 (IF-2; GTPase); InterProIPR000178:IPR005225:IPR006847:IPR000795:IPR 004161; KEGG: dfe:Dfer_0032 translation initiation factor IF-2; PFAM: Protein synthesis factor, GTP-binding; Translation initiation factor IF-2, N-terminal; Translation elongation factor EFTu/EF1A, domain 2; SPTR: Translation initiation factor IF-2; TIGRFAM: Initiation factor 2; Small GTP-binding protein; NusA antitermination factor 3506419 10871540 Runsl_3008 Runella slithyformis DSM 19594 NusA antitermination factor YP_004656525.1 3505175 D 761193 CDS YP_004656526.1 338212471 10871541 3506607..3509906 1 NC_015703.1 PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2; InterPro IPR003675; KEGG: dfe:Dfer_2995 abortive infection protein; PFAM: Abortive infection protein; SPTR: Abortive infection protein; translation initiation factor IF-2 3509906 10871541 Runsl_3009 Runella slithyformis DSM 19594 translation initiation factor IF-2 YP_004656526.1 3506607 D 761193 CDS YP_004656527.1 338212472 10871542 3510070..3511059 1 NC_015703.1 PFAM: CAAX amino terminal protease; KEGG: dfe:Dfer_2994 hypothetical protein; SPTR: uncharacterized protein; abortive infection protein 3511059 10871542 Runsl_3010 Runella slithyformis DSM 19594 abortive infection protein YP_004656527.1 3510070 D 761193 CDS YP_004656528.1 338212473 10871543 3511028..3511240 1 NC_015703.1 COGs: COG0575 CDP-diglyceride synthetase; InterPro IPR000374; KEGG: dfe:Dfer_2993 phosphatidate cytidylyltransferase; PFAM: Phosphatidate cytidylyltransferase; SPTR: Phosphatidate cytidylyltransferase; hypothetical protein 3511240 10871543 Runsl_3011 Runella slithyformis DSM 19594 hypothetical protein YP_004656528.1 3511028 D 761193 CDS YP_004656529.1 338212474 10871544 3511221..3512054 1 NC_015703.1 PFAM: Cytidylyltransferase; KEGG: sli:Slin_2396 hypothetical protein; SPTR: uncharacterized protein; phosphatidate cytidylyltransferase 3512054 10871544 Runsl_3012 Runella slithyformis DSM 19594 phosphatidate cytidylyltransferase YP_004656529.1 3511221 D 761193 CDS YP_004656530.1 338212475 10871545 3512109..3512837 1 NC_015703.1 COGs: COG2908 conserved hypothetical protein; InterPro IPR004843; KEGG: lby:Lbys_2996 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; hypothetical protein 3512837 10871545 Runsl_3013 Runella slithyformis DSM 19594 hypothetical protein YP_004656530.1 3512109 D 761193 CDS YP_004656531.1 338212476 10871546 complement(3512841..3513662) 1 NC_015703.1 PFAM: Calcineurin-like phosphoesterase; InterPro IPR001538; KEGG: shg:Sph21_1644 mannose-6-phosphate isomerase type II; PFAM: Mannose-6-phosphate isomerase, type II, C-terminal; SPTR: Mannose-6-phosphate isomerase; metallophosphoesterase 3513662 10871546 Runsl_3014 Runella slithyformis DSM 19594 metallophosphoesterase YP_004656531.1 3512841 R 761193 CDS YP_004656532.1 338212477 10871547 3513750..3514256 1 NC_015703.1 PFAM: Mannose-6-phosphate isomerase; KEGG: dfe:Dfer_4996 metal-dependent hydrolase; SPTR: Metal-dependent hydrolase; mannose-6-phosphate isomerase 3514256 10871547 Runsl_3015 Runella slithyformis DSM 19594 mannose-6-phosphate isomerase YP_004656532.1 3513750 D 761193 CDS YP_004656533.1 338212478 10871548 3514287..3514823 1 NC_015703.1 COGs: COG3339 conserved hypothetical protein; InterPro IPR010652; KEGG: sli:Slin_4497 hypothetical protein; PFAM: Protein of unknown function DUF1232; SPTR: uncharacterized protein; metal-dependent hydrolase 3514823 10871548 Runsl_3016 Runella slithyformis DSM 19594 metal-dependent hydrolase YP_004656533.1 3514287 D 761193 CDS YP_004656534.1 338212479 10871549 3514935..3515375 1 NC_015703.1 PFAM: Protein of unknown function (DUF1232); HAMAP: Twin-arginine translocation protein TatA/E; InterPro IPR006312:IPR003369; KEGG: dfe:Dfer_4461 twin-arginine translocation protein, TatA/E family subunit; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106; SPTR: Twin-arginine translocation protein, TatA/E family subunit; TIGRFAM: Twin-arginine translocation protein TatA/E; hypothetical protein 3515375 10871549 Runsl_3017 Runella slithyformis DSM 19594 hypothetical protein YP_004656534.1 3514935 D 761193 CDS YP_004656535.1 338212480 10871550 3515557..3515760 1 NC_015703.1 PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family; COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit; InterPro IPR004412:IPR000120; KEGG: sli:Slin_4499 glutamyl-tRNA(Gln) amidotransferase, subunit alpha; PFAM: Amidase; SPTR: Glutamyl-tRNA(Gln) amidotransferase subunit A; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit; Sec-independent protein translocase tatA/E-like protein 3515760 10871550 Runsl_3018 Runella slithyformis DSM 19594 Sec-independent protein translocase tatA/E-like protein YP_004656535.1 3515557 D 761193 CDS YP_004656536.1 338212481 10871551 3515888..3517378 1 NC_015703.1 PFAM: Amidase; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit; COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258:IPR018392:IPR002482; KEGG: dfe:Dfer_4463 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Lytic transglycosylase catalytic; glutamyl-tRNA(Gln) amidotransferase subunit A 3517378 10871551 Runsl_3019 Runella slithyformis DSM 19594 glutamyl-tRNA(Gln) amidotransferase subunit A YP_004656536.1 3515888 D 761193 CDS YP_004656537.1 338212482 10871552 3517428..3518852 1 NC_015703.1 PFAM: Transglycosylase SLT domain; LysM domain; COGs: COG1981 membrane protein; InterPro IPR014351:IPR005265; KEGG: lby:Lbys_1279 uncharacterized protein family upf0093; PFAM: Uncharacterised protein family UPF0093; SPTR: Uncharacterized protein family UPF0093; TIGRFAM: Conserved hypothetical protein CHP00701; lytic transglycosylase 3518852 10871552 Runsl_3020 Runella slithyformis DSM 19594 lytic transglycosylase YP_004656537.1 3517428 D 761193 CDS YP_004656538.1 338212483 10871553 3518940..3519473 1 NC_015703.1 PFAM: Uncharacterised protein family (UPF0093); TIGRFAM: TIGR00701 family protein; COGs: COG3440 restriction endonuclease; KEGG: sli:Slin_4171 restriction endonuclease; SPTR: restriction endonuclease; hypothetical protein 3519473 10871553 Runsl_3021 Runella slithyformis DSM 19594 hypothetical protein YP_004656538.1 3518940 D 761193 CDS YP_004656539.1 338212484 10871554 3519525..3520304 1 NC_015703.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: sli:Slin_5998 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; PRIAM: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; SPTR: Oxidoreductase domain protein; restriction endonuclease 3520304 10871554 Runsl_3022 Runella slithyformis DSM 19594 restriction endonuclease YP_004656539.1 3519525 D 761193 CDS YP_004656540.1 338212485 10871555 3520546..3521538 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; InterPro IPR007492; KEGG: cao:Celal_4060 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: two-component response regulator; trans-1,2-dihydrobenzene-1,2-diol dehydrogenase 3521538 10871555 Runsl_3023 Runella slithyformis DSM 19594 trans-1,2-dihydrobenzene-1,2-diol dehydrogenase YP_004656540.1 3520546 D 761193 CDS YP_004656541.1 338212486 10871556 3521561..3522439 1 NC_015703.1 PFAM: LytTr DNA-binding domain; KEGG: chu:CHU_2272 hypothetical protein; SPTR: uncharacterized protein; LytTr DNA-binding protein 3522439 10871556 Runsl_3024 Runella slithyformis DSM 19594 LytTr DNA-binding protein YP_004656541.1 3521561 D 761193 CDS YP_004656542.1 338212487 10871557 3522558..3523259 1 NC_015703.1 KEGG: tbr:Tb927.7.810 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3523259 10871557 Runsl_3025 Runella slithyformis DSM 19594 hypothetical protein YP_004656542.1 3522558 D 761193 CDS YP_004656543.1 338212488 10871558 complement(3523278..3523757) 1 NC_015703.1 COGs: COG5002 Signal transduction histidine kinase; InterProIPR003660:IPR013767:IPR003661:IPR003594:IPR 000014; KEGG: sli:Slin_0068 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; PAS fold; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; PAS; SPTR: PAS/PAC sensor signal transduction histidine kinase; hypothetical protein 3523757 10871558 Runsl_3026 Runella slithyformis DSM 19594 hypothetical protein YP_004656543.1 3523278 R 761193 CDS YP_004656544.1 338212489 10871559 complement(3523858..3525555) 1 NC_015703.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR003852; KEGG: cpi:Cpin_3612 osmosensitive K channel signal transduction histidine kinase, sensor subunit KdpD; PFAM: Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal; SPTR: Osmosensitive K channel signal transduction histidine kinase, sensor subunit KdpD; multi-sensor signal transduction histidine kinase 3525555 10871559 Runsl_3027 Runella slithyformis DSM 19594 multi-sensor signal transduction histidine kinase YP_004656544.1 3523858 R 761193 CDS YP_004656545.1 338212490 10871560 complement(3525597..3526724) 1 NC_015703.1 PFAM: Universal stress protein family; Osmosensitive K+ channel His kinase sensor domain; KEGG: chu:CHU_1985 hypothetical protein; SPTR: uncharacterized protein; osmosensitive K+ channel signal transduction histidine kinase, sensor subunit KdpD 3526724 10871560 Runsl_3028 Runella slithyformis DSM 19594 osmosensitive K+ channel signal transduction histidine kinase, sensor subunit KdpD YP_004656545.1 3525597 R 761193 CDS YP_004656546.1 338212491 10871561 complement(3526741..3527817) 1 NC_015703.1 COGs: COG2156 K+-transporting ATPase c chain; HAMAP: Potassium transporting ATPase, C subunit; InterPro IPR003820; KEGG: sli:Slin_0065 potassium ABC transporter ATPase; PFAM: Potassium transporting ATPase, C subunit; PRIAM: Potassium-transporting ATPase; SPTR: Potassium-transporting ATPase C chain; TIGRFAM: Potassium transporting ATPase, C subunit; hypothetical protein 3527817 10871561 Runsl_3029 Runella slithyformis DSM 19594 hypothetical protein YP_004656546.1 3526741 R 761193 CDS YP_004656547.1 338212492 10871562 complement(3527902..3528465) 1 NC_015703.1 PFAM: K+-transporting ATPase, c chain; TIGRFAM: K+-transporting ATPase, C subunit; COGs: COG2216 High-affinity K+ transport system ATPase chain B; HAMAP: Potassium-transporting ATPase, B chain; InterPro IPR006391:IPR001757:IPR008250:IPR005834; KEGG: dfe:Dfer_0376 K+-transporting ATPase, B subunit; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Potassium-transporting ATPase B chain; TIGRFAM: Potassium-transporting ATPase, B chain; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; potassium-transporting ATPase subunit C 3528465 10871562 Runsl_3030 Runella slithyformis DSM 19594 potassium-transporting ATPase subunit C YP_004656547.1 3527902 R 761193 CDS YP_004656548.1 338212493 10871563 complement(3528501..3530555) 1 NC_015703.1 PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; KEGG: sli:Slin_6261 hypothetical protein; SPTR: uncharacterized protein; potassium-transporting ATPase subunit B 3530555 10871563 Runsl_3031 Runella slithyformis DSM 19594 potassium-transporting ATPase subunit B YP_004656548.1 3528501 R 761193 CDS YP_004656549.1 338212494 10871564 3530591..3530890 1 NC_015703.1 KEGG: tko:TK0310 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3530890 10871564 Runsl_3032 Runella slithyformis DSM 19594 hypothetical protein YP_004656549.1 3530591 D 761193 CDS YP_004656550.1 338212495 10871565 3530890..3531246 1 NC_015703.1 COGs: COG2060 K+-transporting ATPase A chain; HAMAP: ATPase, K+ transporting, A subunit; InterPro IPR004623; KEGG: fjo:Fjoh_1975 potassium-transporting ATPase subunit A; PFAM: ATPase, K+ transporting, A subunit; PRIAM: Potassium-transporting ATPase; SPTR: Potassium-transporting ATPase A chain; TIGRFAM: ATPase, K+ transporting, A subunit; hypothetical protein 3531246 10871565 Runsl_3033 Runella slithyformis DSM 19594 hypothetical protein YP_004656550.1 3530890 D 761193 CDS YP_004656551.1 338212496 10871566 complement(3531233..3532987) 1 NC_015703.1 PFAM: Potassium-transporting ATPase A subunit; TIGRFAM: K+-transporting ATPase, KdpA; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR002078:IPR002197:IPR003593; KEGG: sli:Slin_0059 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family; potassium-transporting ATPase subunit A 3532987 10871566 Runsl_3034 Runella slithyformis DSM 19594 potassium-transporting ATPase subunit A YP_004656551.1 3531233 R 761193 CDS YP_004656552.1 338212497 10871567 complement(3533401..3534732) 1 NC_015703.1 PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; COGs: COG1210 UDP-glucose pyrophosphorylase; InterPro IPR005771:IPR005835; KEGG: dfe:Dfer_4625 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: UTP--glucose-1-phosphate uridylyltransferase; SPTR: UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; Fis family transcriptional regulator 3534732 10871567 Runsl_3035 Runella slithyformis DSM 19594 Fis family transcriptional regulator YP_004656552.1 3533401 R 761193 CDS YP_004656553.1 338212498 10871568 complement(3534807..3535682) 1 NC_015703.1 PFAM: Nucleotidyl transferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: dfe:Dfer_3653 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28; UTP-glucose-1-phosphate uridylyltransferase 3535682 10871568 Runsl_3036 Runella slithyformis DSM 19594 UTP-glucose-1-phosphate uridylyltransferase YP_004656553.1 3534807 R 761193 CDS YP_004656554.1 338212499 10871569 complement(3535747..3537231) 1 NC_015703.1 PFAM: Peptidase M28; COGs: COG0083 Homoserine kinase; HAMAP: Homoserine kinase; InterPro IPR000870:IPR006204:IPR013750; KEGG: dfe:Dfer_3151 homoserine kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal; PRIAM: Homoserine kinase; SPTR: Homoserine kinase; TIGRFAM: Homoserine kinase; peptidase M28 3537231 10871569 Runsl_3037 Runella slithyformis DSM 19594 peptidase M28 YP_004656554.1 3535747 R 761193 CDS YP_004656555.1 338212500 10871570 complement(3537451..3538386) 1 NC_015703.1 PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: homoserine kinase; COGs: COG1895 conserved hypothetical protein related to C-terminal domain of eukaryotic chaperone SACSIN; InterPro IPR007842; KEGG: sli:Slin_2849 HEPN domain protein; PFAM: HEPN; SPTR: HEPN domain protein; homoserine kinase 3538386 10871570 Runsl_3038 Runella slithyformis DSM 19594 homoserine kinase YP_004656555.1 3537451 R 761193 CDS YP_004656556.1 338212501 10871571 complement(3538467..3538784) 1 NC_015703.1 PFAM: HEPN domain; InterPro IPR002934; KEGG: sli:Slin_0018 DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase; SPTR: DNA polymerase beta domain protein region; HEPN domain-containing protein 3538784 10871571 Runsl_3039 Runella slithyformis DSM 19594 HEPN domain-containing protein YP_004656556.1 3538467 R 761193 CDS YP_004656557.1 338212502 10871572 complement(3538781..3539116) 1 NC_015703.1 PFAM: Nucleotidyltransferase domain; COGs: COG0657 Esterase/lipase; KEGG: dfe:Dfer_3894 esterase/lipase-like protein; SPTR: Esterase/lipase-like protein; DNA polymerase beta domain-containing protein 3539116 10871572 Runsl_3040 Runella slithyformis DSM 19594 DNA polymerase beta domain-containing protein YP_004656557.1 3538781 R 761193 CDS YP_004656558.1 338212503 10871573 complement(3539389..3540294) 1 NC_015703.1 PFAM: Prolyl oligopeptidase; COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; InterPro IPR000550; KEGG: sli:Slin_4404 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PRIAM:2-amino-4-hydroxy-6-hydroxymethyldihydropteri dinediphosphokinase; SPTR:2-amino-4-hydroxy-6-hydroxymethyldihydropterid inepyrophosphokinase; TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; esterase 3540294 10871573 Runsl_3041 Runella slithyformis DSM 19594 esterase YP_004656558.1 3539389 R 761193 CDS YP_004656559.1 338212504 10871574 3540377..3540865 1 NC_015703.1 PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; COGs: COG1231 Monoamine oxidase; InterPro IPR002937; KEGG: ddi:DDB_G0289265 hypothetical protein; PFAM: Amine oxidase; SPTR: Amine oxidase, flavin-containing superfamily; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3540865 10871574 Runsl_3042 Runella slithyformis DSM 19594 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_004656559.1 3540377 D 761193 CDS YP_004656560.1 338212505 10871575 3540965..3542335 1 NC_015703.1 PFAM: Flavin containing amine oxidoreductase; COGs: COG0606 ATPase with chaperone activity; InterPro IPR004482:IPR000523:IPR003593; KEGG: sli:Slin_4052 Mg chelatase, subunit ChlI; PFAM: Magnesium chelatase, ChlI subunit; SMART: ATPase, AAA+ type, core; SPTR: Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein; amine oxidase 3542335 10871575 Runsl_3043 Runella slithyformis DSM 19594 amine oxidase YP_004656560.1 3540965 D 761193 CDS YP_004656561.1 338212506 10871576 complement(3542400..3543941) 1 NC_015703.1 PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein; KEGG: dfe:Dfer_3604 hypothetical protein; SPTR: uncharacterized protein; Mg chelatase subunit ChlI 3543941 10871576 Runsl_3044 Runella slithyformis DSM 19594 Mg chelatase subunit ChlI YP_004656561.1 3542400 R 761193 CDS YP_004656562.1 338212507 10871577 3544146..3544619 1 NC_015703.1 COGs: COG0514 Superfamily II DNA helicase; InterProIPR006293:IPR018329:IPR011545:IPR001650:IPR 018982:IPR002121:IPR014001; KEGG: sli:Slin_5963 ATP-dependent DNA helicase RecQ; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type, N-terminal; hypothetical protein 3544619 10871577 Runsl_3045 Runella slithyformis DSM 19594 hypothetical protein YP_004656562.1 3544146 D 761193 CDS YP_004656563.1 338212508 10871578 3544952..3547192 1 NC_015703.1 PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; COGs: COG0151 Phosphoribosylamine-glycine ligase; HAMAP: Phosphoribosylglycinamide synthetase; InterPro IPR000115:IPR020562:IPR020561:IPR020560; KEGG: dfe:Dfer_3601 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; PRIAM: Phosphoribosylamine--glycine ligase; SPTR: Phosphoribosylamine/glycine ligase; TIGRFAM: Phosphoribosylglycinamide synthetase; ATP-dependent DNA helicase RecQ 3547192 10871578 Runsl_3046 Runella slithyformis DSM 19594 ATP-dependent DNA helicase RecQ YP_004656563.1 3544952 D 761193 CDS YP_004656564.1 338212509 10871579 3547295..3548584 1 NC_015703.1 PFAM: Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase; COGs: COG1774 Uncharacterized homolog of PSP1; InterPro IPR007557; KEGG: sli:Slin_5965 PSP1 domain protein; PFAM: PSP1, C-terminal; SPTR: PSP1 domain protein; phosphoribosylamine--glycine ligase 3548584 10871579 Runsl_3047 Runella slithyformis DSM 19594 phosphoribosylamine--glycine ligase YP_004656564.1 3547295 D 761193 CDS YP_004656565.1 338212510 10871580 3548686..3549936 1 NC_015703.1 PFAM: PSP1 C-terminal conserved region; InterPro IPR001387; KEGG: hor:Hore_07480 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix domain protein; PSP1 domain-containing protein 3549936 10871580 Runsl_3048 Runella slithyformis DSM 19594 PSP1 domain-containing protein YP_004656565.1 3548686 D 761193 CDS YP_004656566.1 338212511 10871581 complement(3550012..3550392) 1 NC_015703.1 PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein 3550392 10871581 Runsl_3049 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004656566.1 3550012 R 761193 CDS YP_004656567.1 338212512 10871582 3550665..3551531 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 3551531 10871582 Runsl_3050 Runella slithyformis DSM 19594 hypothetical protein YP_004656567.1 3550665 D 761193 CDS YP_004656568.1 338212513 10871584 3552147..3553778 1 NC_015703.1 PFAM: Vitamin K epoxide reductase; peptidase C39 bacteriocin processing 3553778 10871584 Runsl_3052 Runella slithyformis DSM 19594 peptidase C39 bacteriocin processing YP_004656568.1 3552147 D 761193 CDS YP_004656569.1 338212514 10871585 3554165..3554515 1 NC_015703.1 PFAM: delta endotoxin; COGs: COG0694 Thioredoxin-like protein and domains; InterPro IPR014824:IPR001075; KEGG: dfe:Dfer_4882 nitrogen-fixing NifU domain protein; PFAM: NIF system FeS cluster assembly, NifU, C-terminal; NIF system FeS cluster assembly, NifU-like scaffold, N-terminal; SPTR: Nitrogen-fixing NifU domain protein; hypothetical protein 3554515 10871585 Runsl_3053 Runella slithyformis DSM 19594 hypothetical protein YP_004656569.1 3554165 D 761193 CDS YP_004656570.1 338212515 10871586 3554761..3555348 1 NC_015703.1 PFAM: Scaffold protein Nfu/NifU N terminal; NifU-like domain; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: sli:Slin_4902 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; SPTR: N-acetylmuramoyl-L-alanine amidase; nitrogen-fixing NifU domain-containing protein 3555348 10871586 Runsl_3054 Runella slithyformis DSM 19594 nitrogen-fixing NifU domain-containing protein YP_004656570.1 3554761 D 761193 CDS YP_004656571.1 338212516 10871587 3555584..3556369 1 NC_015703.1 PFAM: N-acetylmuramoyl-L-alanine amidase; COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: dfe:Dfer_3636 mammalian cell entry related domain protein; PFAM: Mammalian cell entry related; SPTR: Mammalian cell entry related domain protein; cell wall hydrolase/autolysin 3556369 10871587 Runsl_3055 Runella slithyformis DSM 19594 cell wall hydrolase/autolysin YP_004656571.1 3555584 D 761193 CDS YP_004656572.1 338212517 10871588 3556459..3557421 1 NC_015703.1 PFAM: mce related protein; COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: dfe:Dfer_4444 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein; SPTR: SNARE associated Golgi protein; mammalian cell entry domain-containing protein 3557421 10871588 Runsl_3056 Runella slithyformis DSM 19594 mammalian cell entry domain-containing protein YP_004656572.1 3556459 D 761193 CDS YP_004656573.1 338212518 10871589 complement(3557603..3558268) 1 NC_015703.1 PFAM: SNARE associated Golgi protein; COGs: COG1809 conserved hypothetical protein; InterPro IPR003830; KEGG: dfe:Dfer_4445 phosphosulfolactate synthase; PFAM: (2R)-phospho-3-sulpholactate synthase, ComA; PRIAM: Phosphosulfolactate synthase; SPTR: Phosphosulfolactate synthase; hypothetical protein 3558268 10871589 Runsl_3057 Runella slithyformis DSM 19594 hypothetical protein YP_004656573.1 3557603 R 761193 CDS YP_004656574.1 338212519 10871590 complement(3558316..3559107) 1 NC_015703.1 PFAM: (2R)-phospho-3-sulfolactate synthase (ComA); COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; InterPro IPR001017:IPR005475:IPR005476; KEGG: dfe:Dfer_3632 transketolase domain protein; PFAM: Transketolase, C-terminal; Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component; SPTR: Transketolase domain protein; phosphosulfolactate synthase 3559107 10871590 Runsl_3058 Runella slithyformis DSM 19594 phosphosulfolactate synthase YP_004656574.1 3558316 R 761193 CDS YP_004656575.1 338212520 10871591 complement(3559389..3561797) 1 NC_015703.1 PFAM: Dehydrogenase E1 component; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; InterPro IPR011467; KEGG: sli:Slin_4915 hypothetical protein; PFAM: Protein of unknown function DUF1573; SPTR: uncharacterized protein; transketolase domain-containing protein 3561797 10871591 Runsl_3059 Runella slithyformis DSM 19594 transketolase domain-containing protein YP_004656575.1 3559389 R 761193 CDS YP_004656576.1 338212521 10871592 3562070..3562474 1 NC_015703.1 PFAM: Protein of unknown function (DUF1573); hypothetical protein 3562474 10871592 Runsl_3060 Runella slithyformis DSM 19594 hypothetical protein YP_004656576.1 3562070 D 761193 CDS YP_004656577.1 338212522 10871593 3562561..3562707 1 NC_015703.1 COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sli:Slin_4919 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; hypothetical protein 3562707 10871593 Runsl_3061 Runella slithyformis DSM 19594 hypothetical protein YP_004656577.1 3562561 D 761193 CDS YP_004656578.1 338212523 10871594 3562677..3563882 1 NC_015703.1 PFAM: Beta-lactamase; COGs: COG2367 Beta-lactamase class A; KEGG: sli:Slin_5194 beta-lactamase; SPTR: Beta-lactamase; beta-lactamase 3563882 10871594 Runsl_3062 Runella slithyformis DSM 19594 beta-lactamase YP_004656578.1 3562677 D 761193 CDS YP_004656579.1 338212524 10871595 complement(3563902..3564783) 1 NC_015703.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: sli:Slin_2738 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; beta-lactamase 3564783 10871595 Runsl_3063 Runella slithyformis DSM 19594 beta-lactamase YP_004656579.1 3563902 R 761193 CDS YP_004656580.1 338212525 10871596 complement(3564802..3566925) 1 NC_015703.1 PFAM: OmpA family; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: sli:Slin_1204 efflux transporter RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; OmpA/MotB domain-containing protein 3566925 10871596 Runsl_3064 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004656580.1 3564802 R 761193 CDS YP_004656581.1 338212526 10871597 complement(3567058..3568458) 1 NC_015703.1 PFAM: HlyD family secretion protein; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_2866 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; RND family efflux transporter MFP subunit 3568458 10871597 Runsl_3065 Runella slithyformis DSM 19594 RND family efflux transporter MFP subunit YP_004656581.1 3567058 R 761193 CDS YP_004656582.1 338212527 10871598 complement(3568559..3570013) 1 NC_015703.1 PFAM: Outer membrane efflux protein; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: bld:BLi00328 hypothetical protein; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; outer membrane efflux protein 3570013 10871598 Runsl_3066 Runella slithyformis DSM 19594 outer membrane efflux protein YP_004656582.1 3568559 R 761193 CDS YP_004656583.1 338212528 10871599 complement(3570129..3571649) 1 NC_015703.1 PFAM: Beta-lactamase; Domain of unknown function (DUF3471); InterPro IPR002860; KEGG: mtt:Ftrac_2455 hypothetical protein; PFAM: BNR repeat; SPTR: BNR/Asp-box repeat domain protein; beta-lactamase 3571649 10871599 Runsl_3067 Runella slithyformis DSM 19594 beta-lactamase YP_004656583.1 3570129 R 761193 CDS YP_004656584.1 338212529 10871600 complement(3571721..3574855) 1 NC_015703.1 PFAM: BNR/Asp-box repeat; COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: sli:Slin_6519 MATE efflux family protein; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; glycosyl hydrolase family protein 3574855 10871600 Runsl_3068 Runella slithyformis DSM 19594 glycosyl hydrolase family protein YP_004656584.1 3571721 R 761193 CDS YP_004656585.1 338212530 10871601 complement(3574907..3576253) 1 NC_015703.1 PFAM: MatE; TIGRFAM: efflux protein, MATE family; MATE efflux family protein 3576253 10871601 Runsl_3069 Runella slithyformis DSM 19594 MATE efflux family protein YP_004656585.1 3574907 R 761193 CDS YP_004656586.1 338212531 10871602 complement(3576296..3576454) 1 NC_015703.1 COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; HAMAP: Chaperone protein dnaJ; InterPro IPR012724:IPR001623:IPR001305:IPR002939; KEGG: dfe:Dfer_4973 chaperone protein DnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; Heat shock protein DnaJ, cysteine-rich region; SMART: Heat shock protein DnaJ, N-terminal; SPTR: Chaperone protein DnaJ; TIGRFAM: Chaperone DnaJ; hypothetical protein 3576454 10871602 Runsl_3070 Runella slithyformis DSM 19594 hypothetical protein YP_004656586.1 3576296 R 761193 CDS YP_004656587.1 338212532 10871603 complement(3576751..3577905) 1 NC_015703.1 PFAM: DnaJ C terminal region; DnaJ central domain (4 repeats); DnaJ domain; TIGRFAM: chaperone protein DnaJ; COGs: COG0576 Molecular chaperone GrpE (heat shock protein); HAMAP: GrpE nucleotide exchange factor; InterPro IPR000740; KEGG: sli:Slin_1520 GrpE protein; PFAM: GrpE nucleotide exchange factor; SPTR: Protein grpE; molecular chaperone DnaJ 3577905 10871603 Runsl_3071 Runella slithyformis DSM 19594 molecular chaperone DnaJ YP_004656587.1 3576751 R 761193 CDS YP_004656588.1 338212533 10871604 complement(3578040..3578588) 1 NC_015703.1 PFAM: GrpE; InterPro IPR004365:IPR005135; KEGG: sli:Slin_6007 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; Nucleic acid binding, OB-fold, tRNA/helicase-type; SPTR: Endonuclease/exonuclease/phosphatase; protein grpE 3578588 10871604 Runsl_3072 Runella slithyformis DSM 19594 protein grpE YP_004656588.1 3578040 R 761193 CDS YP_004656589.1 338212534 10871605 3578757..3581618 1 NC_015703.1 PFAM: Endonuclease/Exonuclease/phosphatase; KEGG: dfe:Dfer_4541 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3581618 10871605 Runsl_3073 Runella slithyformis DSM 19594 hypothetical protein YP_004656589.1 3578757 D 761193 CDS YP_004656590.1 338212535 10871606 3582062..3583159 1 NC_015703.1 COGs: COG1452 Organic solvent tolerance protein OstA; KEGG: dfe:Dfer_3634 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3583159 10871606 Runsl_3074 Runella slithyformis DSM 19594 hypothetical protein YP_004656590.1 3582062 D 761193 CDS YP_004656591.1 338212536 10871607 complement(3583254..3586049) 1 NC_015703.1 COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: bch:Bcen2424_5650 sulfatase; PFAM: Sulfatase; SPTR: Sulfatase; hypothetical protein 3586049 10871607 Runsl_3075 Runella slithyformis DSM 19594 hypothetical protein YP_004656591.1 3583254 R 761193 CDS YP_004656592.1 338212537 10871608 3586220..3587869 1 NC_015703.1 PFAM: Sulfatase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: dfe:Dfer_5057 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein; sulfatase 3587869 10871608 Runsl_3076 Runella slithyformis DSM 19594 sulfatase YP_004656592.1 3586220 D 761193 CDS YP_004656593.1 338212538 10871609 3587936..3589081 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; KEGG: dfe:Dfer_0435 hypothetical protein; SPTR: uncharacterized protein; oxidoreductase domain-containing protein 3589081 10871609 Runsl_3077 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004656593.1 3587936 D 761193 CDS YP_004656594.1 338212539 10871610 3589266..3590099 1 NC_015703.1 KEGG: dfe:Dfer_0434 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3590099 10871610 Runsl_3078 Runella slithyformis DSM 19594 hypothetical protein YP_004656594.1 3589266 D 761193 CDS YP_004656595.1 338212540 10871611 3590165..3591361 1 NC_015703.1 InterPro IPR012910:IPR000531; KEGG: sli:Slin_4206 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein 3591361 10871611 Runsl_3079 Runella slithyformis DSM 19594 hypothetical protein YP_004656595.1 3590165 D 761193 CDS YP_004656596.1 338212541 10871612 3591818..3594913 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: sli:Slin_4207 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 3594913 10871612 Runsl_3080 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004656596.1 3591818 D 761193 CDS YP_004656597.1 338212542 10871613 3594939..3596309 1 NC_015703.1 PFAM: SusD family; COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814; KEGG: dfe:Dfer_0433 aminotransferase class-III; PFAM: Aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: Aminotransferase class-III; RagB/SusD domain-containing protein 3596309 10871613 Runsl_3081 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004656597.1 3594939 D 761193 CDS YP_004656598.1 338212543 10871614 3596407..3597693 1 NC_015703.1 PFAM: Aminotransferase class-III; COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; HAMAP: Dihydrodipicolinate synthase; InterPro IPR002220:IPR005263; KEGG: dfe:Dfer_5112 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase; SPTR: Dihydrodipicolinate synthase; TIGRFAM: Dihydrodipicolinate synthase subfamily; acetylornithine transaminase 3597693 10871614 Runsl_3082 Runella slithyformis DSM 19594 acetylornithine transaminase YP_004656598.1 3596407 D 761193 CDS YP_004656599.1 338212544 10871615 3597782..3598666 1 NC_015703.1 PFAM: Dihydrodipicolinate synthetase; TIGRFAM: dihydrodipicolinate synthase; InterPro IPR000834; KEGG: sli:Slin_2535 peptidase M14 carboxypeptidase A; PFAM: Peptidase M14, carboxypeptidase A; SMART: Peptidase M14, carboxypeptidase A; SPTR: Peptidase M14 carboxypeptidase A; dihydrodipicolinate synthase 3598666 10871615 Runsl_3083 Runella slithyformis DSM 19594 dihydrodipicolinate synthase YP_004656599.1 3597782 D 761193 CDS YP_004656600.1 338212545 10871616 complement(3598774..3601302) 1 NC_015703.1 PFAM: Zinc carboxypeptidase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: dfe:Dfer_4753 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; PRIAM: Glucose-fructose oxidoreductase; SPTR: Oxidoreductase domain protein; peptidase M14 carboxypeptidase A 3601302 10871616 Runsl_3084 Runella slithyformis DSM 19594 peptidase M14 carboxypeptidase A YP_004656600.1 3598774 R 761193 CDS YP_004656601.1 338212546 10871617 3601453..3602553 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; glucose-fructose oxidoreductase 3602553 10871617 Runsl_3085 Runella slithyformis DSM 19594 glucose-fructose oxidoreductase YP_004656601.1 3601453 D 761193 CDS YP_004656602.1 338212547 10871618 complement(3602630..3602893) 1 NC_015703.1 KEGG: lby:Lbys_2890 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3602893 10871618 Runsl_3086 Runella slithyformis DSM 19594 hypothetical protein YP_004656602.1 3602630 R 761193 CDS YP_004656603.1 338212548 10871619 3603284..3603757 1 NC_015703.1 KEGG: cpi:Cpin_0629 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3603757 10871619 Runsl_3087 Runella slithyformis DSM 19594 hypothetical protein YP_004656603.1 3603284 D 761193 CDS YP_004656604.1 338212549 10871620 3603937..3604638 1 NC_015703.1 PFAM: TAT (twin-arginine translocation) pathway signal sequence; KEGG: cpi:Cpin_0630 hypothetical protein; SPTR: Dessication-associated protein; hypothetical protein 3604638 10871620 Runsl_3088 Runella slithyformis DSM 19594 hypothetical protein YP_004656604.1 3603937 D 761193 CDS YP_004656605.1 338212550 10871621 3604652..3605485 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 3605485 10871621 Runsl_3089 Runella slithyformis DSM 19594 hypothetical protein YP_004656605.1 3604652 D 761193 CDS YP_004656606.1 338212551 10871623 complement(3605981..3606439) 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: cpi:Cpin_6476 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; N-acetyltransferase GCN5 3606439 10871623 Runsl_3091 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004656606.1 3605981 R 761193 CDS YP_004656607.1 338212552 10871624 complement(3606469..3607302) 1 NC_015703.1 PFAM: Carbon-nitrogen hydrolase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3607302 10871624 Runsl_3092 Runella slithyformis DSM 19594 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004656607.1 3606469 R 761193 CDS YP_004656608.1 338212553 10871625 complement(3607558..3607728) 1 NC_015703.1 COGs: COG0376 Catalase (peroxidase I); HAMAP: Catalase-peroxidase haem; InterPro IPR000763:IPR002016; KEGG: sli:Slin_5085 catalase/peroxidase HPI; PFAM: Haem peroxidase, plant/fungal/bacterial; PRIAM: Catalase; SPTR: Catalase-peroxidase; TIGRFAM: Catalase-peroxidase haem; hypothetical protein 3607728 10871625 Runsl_3093 Runella slithyformis DSM 19594 hypothetical protein YP_004656608.1 3607558 R 761193 CDS YP_004656609.1 338212554 10871626 3607768..3610011 1 NC_015703.1 PFAM: Peroxidase; TIGRFAM: catalase/peroxidase HPI; InterPro IPR003838; KEGG: sli:Slin_4641 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; catalase 3610011 10871626 Runsl_3094 Runella slithyformis DSM 19594 catalase YP_004656609.1 3607768 D 761193 CDS YP_004656610.1 338212555 10871627 3610326..3612737 1 NC_015703.1 PFAM: Predicted permease; COGs: COG0587 DNA polymerase III alpha subunit; InterProIPR003141:IPR004013:IPR011708:IPR004365:IPR 004805; KEGG: dfe:Dfer_0427 DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: DNA-directed DNA polymerase; SMART: Polymerase/histidinol phosphatase, N-terminal; SPTR: DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; hypothetical protein 3612737 10871627 Runsl_3095 Runella slithyformis DSM 19594 hypothetical protein YP_004656610.1 3610326 D 761193 CDS YP_004656611.1 338212556 10871628 complement(3612851..3616555) 1 NC_015703.1 PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc); DNA polymerase III subunit alpha 3616555 10871628 Runsl_3096 Runella slithyformis DSM 19594 DNA polymerase III subunit alpha YP_004656611.1 3612851 R 761193 CDS YP_004656612.1 338212557 10871629 complement(3616778..3616900) 1 NC_015703.1 KEGG: mar:MAE_51780 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3616900 10871629 Runsl_3097 Runella slithyformis DSM 19594 hypothetical protein YP_004656612.1 3616778 R 761193 CDS YP_004656613.1 338212558 10871630 complement(3617093..3618535) 1 NC_015703.1 manually curated; hypothetical protein 3618535 10871630 Runsl_3098 Runella slithyformis DSM 19594 hypothetical protein YP_004656613.1 3617093 R 761193 CDS YP_004656614.1 338212559 10871632 complement(3618779..3620941) 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG3808 Inorganic pyrophosphatase; HAMAP: Pyrophosphate-energized proton pump; InterPro IPR004131:IPR006665; KEGG: lby:Lbys_1603 v-type h(+)-translocating pyrophosphatase; PFAM: Inorganic H+ pyrophosphatase; Outer membrane protein, OmpA/MotB, C-terminal; PRIAM: Inorganic diphosphatase; SPTR: V-type H(+)-translocating pyrophosphatase; TIGRFAM: Inorganic H+ pyrophosphatase; integral membrane sensor signal transduction histidine kinase 3620941 10871632 Runsl_3100 Runella slithyformis DSM 19594 integral membrane sensor signal transduction histidine kinase YP_004656614.1 3618779 R 761193 CDS YP_004656615.1 338212560 10871633 3621299..3623947 1 NC_015703.1 PFAM: Inorganic H+ pyrophosphatase; OmpA family; TIGRFAM: vacuolar-type H(+)-translocating pyrophosphatase; KEGG: sli:Slin_3024 hypothetical protein; SPTR: uncharacterized protein; pyrophosphate-energized proton pump 3623947 10871633 Runsl_3101 Runella slithyformis DSM 19594 pyrophosphate-energized proton pump YP_004656615.1 3621299 D 761193 CDS YP_004656616.1 338212561 10871634 3624140..3624487 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 3624487 10871634 Runsl_3102 Runella slithyformis DSM 19594 hypothetical protein YP_004656616.1 3624140 D 761193 CDS YP_004656617.1 338212562 10871636 complement(3624665..3625639) 1 NC_015703.1 PFAM: Polyprenyl synthetase; COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: sli:Slin_3007 patatin; PFAM: Patatin; SPTR: Patatin; trans-hexaprenyltranstransferase 3625639 10871636 Runsl_3104 Runella slithyformis DSM 19594 trans-hexaprenyltranstransferase YP_004656617.1 3624665 R 761193 CDS YP_004656618.1 338212563 10871637 3625971..3626954 1 NC_015703.1 PFAM: Patatin-like phospholipase; InterPro IPR000182; KEGG: sli:Slin_1389 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; patatin 3626954 10871637 Runsl_3105 Runella slithyformis DSM 19594 patatin YP_004656618.1 3625971 D 761193 CDS YP_004656619.1 338212564 10871638 3626990..3627439 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; InterPro IPR001087; KEGG: sli:Slin_1223 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family; N-acetyltransferase GCN5 3627439 10871638 Runsl_3106 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004656619.1 3626990 D 761193 CDS YP_004656620.1 338212565 10871639 complement(3627469..3628449) 1 NC_015703.1 PFAM: GDSL-like Lipase/Acylhydrolase; G-D-S-L family lipolytic protein 3628449 10871639 Runsl_3107 Runella slithyformis DSM 19594 G-D-S-L family lipolytic protein YP_004656620.1 3627469 R 761193 CDS YP_004656621.1 338212566 10871640 3628808..3629158 1 NC_015703.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR001789:IPR001610:IPR003661:IPR003594:IPR 000014; KEGG: sli:Slin_1036 multi-sensor signal transduction histidine kinase; PFAM: Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SMART: Signal transduction response regulator, receiver region; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; hypothetical protein 3629158 10871640 Runsl_3108 Runella slithyformis DSM 19594 hypothetical protein YP_004656621.1 3628808 D 761193 CDS YP_004656622.1 338212567 10871641 3629477..3631048 1 NC_015703.1 PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0642 Signal transduction histidine kinase; InterProIPR003660:IPR003018:IPR003661:IPR003594:IPR 001789:IPR007891; KEGG: sli:Slin_1035 GAF sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; CHASE3; HAMP linker domain; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; GAF; Signal transduction response regulator, receiver region; SPTR: GAF sensor hybrid histidine kinase; multi-sensor signal transduction histidine kinase 3631048 10871641 Runsl_3109 Runella slithyformis DSM 19594 multi-sensor signal transduction histidine kinase YP_004656622.1 3629477 D 761193 CDS YP_004656623.1 338212568 10871642 3631114..3634722 1 NC_015703.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; CHASE3 domain; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: sli:Slin_1034 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; multi-sensor hybrid histidine kinase 3634722 10871642 Runsl_3110 Runella slithyformis DSM 19594 multi-sensor hybrid histidine kinase YP_004656623.1 3631114 D 761193 CDS YP_004656624.1 338212569 10871643 3634735..3635169 1 NC_015703.1 PFAM: Response regulator receiver domain; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterPro IPR000780; KEGG: dfe:Dfer_0391 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase, CheR-type; PRIAM: Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase, CheR-type; SPTR: MCP methyltransferase, CheR-type; response regulator receiver protein 3635169 10871643 Runsl_3111 Runella slithyformis DSM 19594 response regulator receiver protein YP_004656624.1 3634735 D 761193 CDS YP_004656625.1 338212570 10871644 3635181..3635993 1 NC_015703.1 PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain; COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; InterPro IPR000673; KEGG: sli:Slin_1032 CheB methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; PRIAM: Protein-glutamate methylesterase; SPTR: CheB methylesterase; chemotaxis protein CheR 3635993 10871644 Runsl_3112 Runella slithyformis DSM 19594 chemotaxis protein CheR YP_004656625.1 3635181 D 761193 CDS YP_004656626.1 338212571 10871645 3635975..3636562 1 NC_015703.1 PFAM: CheB methylesterase; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: cpi:Cpin_3744 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; chemotaxis protein CheB 3636562 10871645 Runsl_3113 Runella slithyformis DSM 19594 chemotaxis protein CheB YP_004656626.1 3635975 D 761193 CDS YP_004656627.1 338212572 10871646 3636569..3636961 1 NC_015703.1 PFAM: Response regulator receiver domain; KEGG: dfe:Dfer_4537 FG-GAP repeat-containing protein; SPTR: FG-GAP repeat-containing protein; response regulator receiver protein 3636961 10871646 Runsl_3114 Runella slithyformis DSM 19594 response regulator receiver protein YP_004656627.1 3636569 D 761193 CDS YP_004656628.1 338212573 10871647 3637312..3638484 1 NC_015703.1 COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017; KEGG: cpi:Cpin_4922 hypothetical protein; PFAM: Cysteine-rich region, CCG; SPTR: uncharacterized protein; hypothetical protein 3638484 10871647 Runsl_3115 Runella slithyformis DSM 19594 hypothetical protein YP_004656628.1 3637312 D 761193 CDS YP_004656629.1 338212574 10871648 3638563..3639297 1 NC_015703.1 PFAM: Cysteine-rich domain; COGs: COG1139 conserved hypothetical protein containing a ferredoxin-like domain; InterPro IPR003741; KEGG: cpi:Cpin_4921 hypothetical protein; PFAM: Protein of unknown function DUF162; SPTR: uncharacterized protein; hypothetical protein 3639297 10871648 Runsl_3116 Runella slithyformis DSM 19594 hypothetical protein YP_004656629.1 3638563 D 761193 CDS YP_004656630.1 338212575 10871649 3639438..3640802 1 NC_015703.1 PFAM: Domain of unknown function (DUF3390); Uncharacterised ACR, YkgG family COG1556; TIGRFAM: iron-sulfur cluster-binding protein; COGs: COG1556 conserved hypothetical protein; InterPro IPR003741; KEGG: phe:Phep_2948 hypothetical protein; PFAM: Protein of unknown function DUF162; SPTR: uncharacterized protein; lactate utilization protein B/C 3640802 10871649 Runsl_3117 Runella slithyformis DSM 19594 lactate utilization protein B/C YP_004656630.1 3639438 D 761193 CDS YP_004656631.1 338212576 10871650 3640953..3641531 1 NC_015703.1 PFAM: Uncharacterised ACR, YkgG family COG1556; KEGG: dfe:Dfer_4410 hypothetical protein; SPTR: uncharacterized protein; lactate utilization protein B/C 3641531 10871650 Runsl_3118 Runella slithyformis DSM 19594 lactate utilization protein B/C YP_004656631.1 3640953 D 761193 CDS YP_004656632.1 338212577 10871651 3641649..3643070 1 NC_015703.1 PFAM: Neutral/alkaline non-lysosomal ceramidase; hypothetical protein 3643070 10871651 Runsl_3119 Runella slithyformis DSM 19594 hypothetical protein YP_004656632.1 3641649 D 761193 CDS YP_004656633.1 338212578 10871652 complement(3643970..3644155) 1 NC_015703.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: ssm:Spirs_3266 two component transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: uncharacterized protein; hypothetical protein 3644155 10871652 Runsl_3120 Runella slithyformis DSM 19594 hypothetical protein YP_004656633.1 3643970 R 761193 CDS YP_004656634.1 338212579 10871653 3644771..3645271 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: cno:NT01CX_0386 transcriptional regulatory protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; AraC family transcriptional regulator 3645271 10871653 Runsl_3121 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004656634.1 3644771 D 761193 CDS YP_004656635.1 338212580 10871654 3645926..3646783 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC family transcriptional regulator 3646783 10871654 Runsl_3122 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004656635.1 3645926 D 761193 CDS YP_004656636.1 338212581 10871655 complement(3646993..3647097) 1 NC_015703.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR003594; KEGG: sli:Slin_1040 response regulator receiver sensor signal transduction histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; SPTR: Response regulator receiver sensor signal transduction histidine kinase; hypothetical protein 3647097 10871655 Runsl_3123 Runella slithyformis DSM 19594 hypothetical protein YP_004656636.1 3646993 R 761193 CDS YP_004656637.1 338212582 10871656 3647113..3648237 1 NC_015703.1 PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR018060:IPR000005; KEGG: sli:Slin_2666 AraC family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Helix-turn-helix, AraC type; SMART: Signal transduction response regulator, receiver region; Helix-turn-helix, AraC domain; SPTR: Two component transcriptional regulator, AraC family; response regulator receiver sensor signal transduction histidine kinase 3648237 10871656 Runsl_3124 Runella slithyformis DSM 19594 response regulator receiver sensor signal transduction histidine kinase YP_004656637.1 3647113 D 761193 CDS YP_004656638.1 338212583 10871657 3648354..3649133 1 NC_015703.1 PFAM: Response regulator receiver domain; Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: tva:TVAG_355490 viral A-type inclusion protein; AraC family transcriptional regulator 3649133 10871657 Runsl_3125 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004656638.1 3648354 D 761193 CDS YP_004656639.1 338212584 10871658 3649571..3650356 1 NC_015703.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 013767:IPR013655:IPR013656; KEGG: sli:Slin_0618 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold-4; PAS fold-3; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; hypothetical protein 3650356 10871658 Runsl_3126 Runella slithyformis DSM 19594 hypothetical protein YP_004656639.1 3649571 D 761193 CDS YP_004656640.1 338212585 10871659 3650928..3653951 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system; InterPro IPR005151:IPR011659; KEGG: cao:Celal_1779 peptidase S41; PFAM: Peptidase S41; WD40-like Beta Propeller; SMART: Peptidase S41; SPTR: Peptidase S41; PAS/PAC sensor signal transduction histidine kinase 3653951 10871659 Runsl_3127 Runella slithyformis DSM 19594 PAS/PAC sensor signal transduction histidine kinase YP_004656640.1 3650928 D 761193 CDS YP_004656641.1 338212586 10871660 complement(3654249..3657566) 1 NC_015703.1 PFAM: WD40-like Beta Propeller Repeat; Peptidase S41; COGs: COG3569 Topoisomerase IB; KEGG: psn:Pedsa_1825 DNA topoisomerase; SPTR: DNA topoisomerase IB (Poxvirus type); peptidase S41 3657566 10871660 Runsl_3128 Runella slithyformis DSM 19594 peptidase S41 YP_004656641.1 3654249 R 761193 CDS YP_004656642.1 338212587 10871661 complement(3657653..3658759) 1 NC_015703.1 PFAM: Eukaryotic DNA topoisomerase I, catalytic core; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_0261 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; DNA topoisomerase 3658759 10871661 Runsl_3129 Runella slithyformis DSM 19594 DNA topoisomerase YP_004656642.1 3657653 R 761193 CDS YP_004656643.1 338212588 10871662 complement(3658776..3659639) 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003593:IPR003439:IPR013611; KEGG: sli:Slin_0799 ABC transporter; PFAM: ABC transporter-like; Transport-associated OB, type 2; PRIAM: Polyamine-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; 3-oxoacyl-ACP reductase 3659639 10871662 Runsl_3130 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004656643.1 3658776 R 761193 CDS YP_004656644.1 338212589 10871663 complement(3659982..3660956) 1 NC_015703.1 PFAM: ABC transporter; TOBE domain; InterPro IPR000834; KEGG: lby:Lbys_0651 peptidase M14 carboxypeptidase A; PFAM: Peptidase M14, carboxypeptidase A; SMART: Peptidase M14, carboxypeptidase A; SPTR: Peptidase M14 carboxypeptidase A; polyamine-transporting ATPase 3660956 10871663 Runsl_3131 Runella slithyformis DSM 19594 polyamine-transporting ATPase YP_004656644.1 3659982 R 761193 CDS YP_004656645.1 338212590 10871664 3661155..3662912 1 NC_015703.1 PFAM: Zinc carboxypeptidase; InterPro IPR000834; KEGG: lby:Lbys_0650 peptidase M14 carboxypeptidase A; PFAM: Peptidase M14, carboxypeptidase A; SMART: Peptidase M14, carboxypeptidase A; SPTR: Peptidase M14 carboxypeptidase A; peptidase M14 carboxypeptidase A 3662912 10871664 Runsl_3132 Runella slithyformis DSM 19594 peptidase M14 carboxypeptidase A YP_004656645.1 3661155 D 761193 CDS YP_004656646.1 338212591 10871665 3662958..3664766 1 NC_015703.1 PFAM: Zinc carboxypeptidase; COGs: COG3653 N-acyl-D-aspartate/D-glutamate deacylase; InterPro IPR006680:IPR012855; KEGG: sli:Slin_6046 D-aminoacylase domain protein; PFAM: D-aminoacylase, C-terminal; Amidohydrolase 1; PRIAM: N-acyl-D-amino-acid deacylase; SPTR: D-aminoacylase domain protein; peptidase M14 carboxypeptidase A 3664766 10871665 Runsl_3133 Runella slithyformis DSM 19594 peptidase M14 carboxypeptidase A YP_004656646.1 3662958 D 761193 CDS YP_004656647.1 338212592 10871666 3664982..3666553 1 NC_015703.1 PFAM: D-aminoacylase, C-terminal region; Amidohydrolase; COGs: COG4585 Signal transduction histidine kinase; InterPro IPR019734:IPR003594:IPR001440:IPR011712; KEGG: lby:Lbys_2994 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; Tetratricopeptide TPR-1; SMART: ATP-binding region, ATPase-like; Tetratricopeptide repeat; SPTR: Histidine kinase; N-acyl-D-amino-acid deacylase 3666553 10871666 Runsl_3134 Runella slithyformis DSM 19594 N-acyl-D-amino-acid deacylase YP_004656647.1 3664982 D 761193 CDS YP_004656648.1 338212593 10871667 3666792..3668645 1 NC_015703.1 PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro IPR011637; KEGG: mxa:MXAN_6633 hypothetical protein; PFAM: DoxX; SPTR: membrane protein; signal transduction histidine kinase 3668645 10871667 Runsl_3135 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004656648.1 3666792 D 761193 CDS YP_004656649.1 338212594 10871668 complement(3668635..3669903) 1 NC_015703.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: chu:CHU_0605 b-glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: B-glycosyltransferase, glycosyltransferase 2 protein; DoxX family protein 3669903 10871668 Runsl_3136 Runella slithyformis DSM 19594 DoxX family protein YP_004656649.1 3668635 R 761193 CDS YP_004656650.1 338212595 10871669 3669955..3670695 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544:IPR005786; KEGG: dfe:Dfer_3303 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV; PRIAM: Branched-chain-amino-acid transaminase; SPTR: Branched-chain amino acid aminotransferase; TIGRFAM: Branched-chain amino acid aminotransferase II; family 2 glycosyl transferase 3670695 10871669 Runsl_3137 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004656650.1 3669955 D 761193 CDS YP_004656651.1 338212596 10871670 complement(3670909..3671976) 1 NC_015703.1 PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group II; branched-chain amino acid aminotransferase 3671976 10871670 Runsl_3138 Runella slithyformis DSM 19594 branched-chain amino acid aminotransferase YP_004656651.1 3670909 R 761193 CDS YP_004656652.1 338212597 10871671 3672083..3672406 1 NC_015703.1 COGs: COG2096 conserved hypothetical protein; InterPro IPR002779:IPR017858; KEGG: dfe:Dfer_3302 ATP/cobalamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type; PRIAM: Cob(I)yrinic acid a,c-diamide adenosyltransferase; SPTR: ATP/cobalamin adenosyltransferase; TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal; hypothetical protein 3672406 10871671 Runsl_3139 Runella slithyformis DSM 19594 hypothetical protein YP_004656652.1 3672083 D 761193 CDS YP_004656653.1 338212598 10871672 complement(3672325..3672879) 1 NC_015703.1 PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase; KEGG: sli:Slin_6457 hypothetical protein; SPTR: uncharacterized protein; ATP/cobalamin adenosyltransferase 3672879 10871672 Runsl_3140 Runella slithyformis DSM 19594 ATP/cobalamin adenosyltransferase YP_004656653.1 3672325 R 761193 CDS YP_004656654.1 338212599 10871673 3673121..3673543 1 NC_015703.1 InterPro IPR008538; KEGG: dfe:Dfer_4308 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; hypothetical protein 3673543 10871673 Runsl_3141 Runella slithyformis DSM 19594 hypothetical protein YP_004656654.1 3673121 D 761193 CDS YP_004656655.1 338212600 10871674 complement(3673509..3674087) 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); COGs: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; InterPro IPR000581; KEGG: dfe:Dfer_4563 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; PRIAM: Dihydroxy-acid dehydratase; SPTR: Dihydroxy-acid dehydratase; hypothetical protein 3674087 10871674 Runsl_3142 Runella slithyformis DSM 19594 hypothetical protein YP_004656655.1 3673509 R 761193 CDS YP_004656656.1 338212601 10871675 3674206..3675921 1 NC_015703.1 PFAM: Dehydratase; TIGRFAM: dihydroxy-acid dehydratase; COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: sli:Slin_0096 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; PRIAM: Exopolyphosphatase; SPTR: Ppx/GppA phosphatase; dihydroxy-acid dehydratase 3675921 10871675 Runsl_3143 Runella slithyformis DSM 19594 dihydroxy-acid dehydratase YP_004656656.1 3674206 D 761193 CDS YP_004656657.1 338212602 10871676 complement(3676004..3676936) 1 NC_015703.1 PFAM: Ppx/GppA phosphatase; HAMAP: Ribosomal protein S21; InterPro IPR001911; KEGG: sli:Slin_0097 ribosomal protein S21; PFAM: Ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: Ribosomal protein S21; Ppx/GppA phosphatase 3676936 10871676 Runsl_3144 Runella slithyformis DSM 19594 Ppx/GppA phosphatase YP_004656657.1 3676004 R 761193 CDS YP_004656658.1 338212603 10871677 3677065..3677259 1 NC_015703.1 PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; COGs: COG2350 conserved hypothetical protein; InterPro IPR005545; KEGG: sli:Slin_2848 YCII-related protein; PFAM: YCII-related; SPTR: YCII-related protein; 30S ribosomal protein S21 3677259 10871677 Runsl_3145 Runella slithyformis DSM 19594 30S ribosomal protein S21 YP_004656658.1 3677065 D 761193 CDS YP_004656659.1 338212604 10871678 complement(3677325..3677612) 1 NC_015703.1 PFAM: YCII-related domain; COGs: COG0465 ATP-dependent Zn protease; InterProIPR003593:IPR011546:IPR003959:IPR000642:IPR 005936; KEGG: sli:Slin_3001 ATP-dependent metalloprotease FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; PRIAM: Microtubule-severing ATPase; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent zinc metalloprotease FtsH; TIGRFAM: Peptidase M41, FtsH; hypothetical protein 3677612 10871678 Runsl_3146 Runella slithyformis DSM 19594 hypothetical protein YP_004656659.1 3677325 R 761193 CDS YP_004656660.1 338212605 10871679 complement(3677745..3679751) 1 NC_015703.1 PFAM: Peptidase M41; ATPase associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH; COGs: COG0799 Iojap protein; InterPro IPR004394; KEGG: dfe:Dfer_5041 iojap-like protein; PFAM: Iojap-related protein; SPTR: Iojap-like protein; TIGRFAM: Iojap-related protein; ATP-dependent metalloprotease FtsH 3679751 10871679 Runsl_3147 Runella slithyformis DSM 19594 ATP-dependent metalloprotease FtsH YP_004656660.1 3677745 R 761193 CDS YP_004656661.1 338212606 10871680 complement(3679947..3680330) 1 NC_015703.1 PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-like ribosome-associated protein; COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR004143:IPR003142:IPR004408; KEGG: sli:Slin_3003 biotin/acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Biotin protein ligase, C-terminal; SPTR: Biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; iojap family protein 3680330 10871680 Runsl_3148 Runella slithyformis DSM 19594 iojap family protein YP_004656661.1 3679947 R 761193 CDS YP_004656662.1 338212607 10871681 3680377..3681135 1 NC_015703.1 PFAM: Biotin/lipoate A/B protein ligase; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region; InterPro IPR019850; KEGG: sli:Slin_4895 gliding motility-associated lipoprotein GldD; SPTR: Gliding motility-associated lipoprotein GldD; TIGRFAM: Gliding motility-associated lipoprotein, GldD; biotin--acetyl-CoA-carboxylase ligase 3681135 10871681 Runsl_3149 Runella slithyformis DSM 19594 biotin--acetyl-CoA-carboxylase ligase YP_004656662.1 3680377 D 761193 CDS YP_004656663.1 338212608 10871682 3681125..3681814 1 NC_015703.1 TIGRFAM: gliding motility-associated lipoprotein GldD; COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537; KEGG: sli:Slin_3485 UbiA prenyltransferase; PFAM: UbiA prenyltransferase; PRIAM: Geranylgeranylglycerol-phosphate geranylgeranyltransferase; SPTR: UbiA prenyltransferase; gliding motility-associated lipoprotein GldD 3681814 10871682 Runsl_3150 Runella slithyformis DSM 19594 gliding motility-associated lipoprotein GldD YP_004656663.1 3681125 D 761193 CDS YP_004656664.1 338212609 10871683 complement(3682000..3682905) 1 NC_015703.1 PFAM: UbiA prenyltransferase; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dfe:Dfer_2479 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; geranylgeranylglycerol-phosphate geranylgeranyltransferase 3682905 10871683 Runsl_3151 Runella slithyformis DSM 19594 geranylgeranylglycerol-phosphate geranylgeranyltransferase YP_004656664.1 3682000 R 761193 CDS YP_004656665.1 338212610 10871684 3683044..3684204 1 NC_015703.1 PFAM: Glycosyl transferases group 1; TIGRFAM: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA; COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR008334; KEGG: sli:Slin_4341 5'-nucleotidase domain protein; PFAM: 5'-Nucleotidase, C-terminal; SPTR: 5'-Nucleotidase domain protein; group 1 glycosyl transferase 3684204 10871684 Runsl_3152 Runella slithyformis DSM 19594 group 1 glycosyl transferase YP_004656665.1 3683044 D 761193 CDS YP_004656666.1 338212611 10871685 3684259..3685017 1 NC_015703.1 PFAM: 5'-nucleotidase, C-terminal domain; COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR004843; KEGG: sli:Slin_4342 metallophosphoesterase; PFAM: Metallophosphoesterase; PRIAM: 5'-nucleotidase; SPTR: Metallophosphoesterase; 5'-nucleotidase 3685017 10871685 Runsl_3153 Runella slithyformis DSM 19594 5'-nucleotidase YP_004656666.1 3684259 D 761193 CDS YP_004656667.1 338212612 10871686 3685027..3685947 1 NC_015703.1 PFAM: Calcineurin-like phosphoesterase; COGs: COG2235 Arginine deiminase; InterPro IPR003198; KEGG: sli:Slin_0192 arginine deiminase; PFAM: Amidinotransferase; PRIAM: Arginine deiminase; SPTR: Arginine deiminase; 5'-nucleotidase 3685947 10871686 Runsl_3154 Runella slithyformis DSM 19594 5'-nucleotidase YP_004656667.1 3685027 D 761193 CDS YP_004656668.1 338212613 10871687 3686158..3687603 1 NC_015703.1 PFAM: Amidinotransferase; InterPro IPR008538; KEGG: sli:Slin_5071 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; arginine deiminase 3687603 10871687 Runsl_3155 Runella slithyformis DSM 19594 arginine deiminase YP_004656668.1 3686158 D 761193 CDS YP_004656669.1 338212614 10871688 3687665..3688231 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); COGs: COG4874 Uncharacterized protein containing a pentein-type domain; KEGG: sli:Slin_0193 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3688231 10871688 Runsl_3156 Runella slithyformis DSM 19594 hypothetical protein YP_004656669.1 3687665 D 761193 CDS YP_004656670.1 338212615 10871689 3688253..3689194 1 NC_015703.1 COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterPro IPR011127:IPR011095; KEGG: dfe:Dfer_4937 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase, N-terminal; D-alanine--D-alanine ligase, C-terminal; PRIAM: D-alanine--D-alanine ligase; SPTR: D-alanine--D-alanine ligase; hypothetical protein 3689194 10871689 Runsl_3157 Runella slithyformis DSM 19594 hypothetical protein YP_004656670.1 3688253 D 761193 CDS YP_004656671.1 338212616 10871690 complement(3689513..3691183) 1 NC_015703.1 PFAM: D-ala D-ala ligase N-terminus; D-ala D-ala ligase C-terminus; TIGRFAM: D-alanine--D-alanine ligase; COGs: COG2367 Beta-lactamase class A; InterPro IPR001466; KEGG: ssm:Spirs_2202 beta-lactamase; PFAM: Beta-lactamase-related; PRIAM: Beta-lactamase; SPTR: Beta-lactamase; D-alanine--D-alanine ligase 3691183 10871690 Runsl_3158 Runella slithyformis DSM 19594 D-alanine--D-alanine ligase YP_004656671.1 3689513 R 761193 CDS YP_004656672.1 338212617 10871691 complement(3691257..3692168) 1 NC_015703.1 PFAM: Beta-lactamase; KEGG: dfe:Dfer_4669 hypothetical protein; SPTR: uncharacterized protein; beta-lactamase 3692168 10871691 Runsl_3159 Runella slithyformis DSM 19594 beta-lactamase YP_004656672.1 3691257 R 761193 CDS YP_004656673.1 338212618 10871692 complement(3692399..3693019) 1 NC_015703.1 COGs: COG0504 CTP synthase (UTP-ammonia lyase); HAMAP: CTP synthase; InterPro IPR004468:IPR017456:IPR000991; KEGG: dfe:Dfer_1151 CTP synthetase; PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; PRIAM: CTP synthase; SPTR: CTP synthase; TIGRFAM: CTP synthase; hypothetical protein 3693019 10871692 Runsl_3160 Runella slithyformis DSM 19594 hypothetical protein YP_004656673.1 3692399 R 761193 CDS YP_004656674.1 338212619 10871693 3693227..3694912 1 NC_015703.1 PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase; COGs: COG0117 Pyrimidine deaminase; InterPro IPR002125:IPR002734:IPR004794; KEGG: sli:Slin_2937 riboflavin biosynthesis protein RibD; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding; PRIAM: Diaminohydroxyphosphoribosylaminopyrimidine deaminase., 5-amino-6-(5-phosphoribosylamino)uracil reductase; SPTR: Riboflavin biosynthesis protein RibD; TIGRFAM: Riboflavin biosynthesis protein RibD; CTP synthase 3694912 10871693 Runsl_3161 Runella slithyformis DSM 19594 CTP synthase YP_004656674.1 3693227 D 761193 CDS YP_004656675.1 338212620 10871694 complement(3695085..3696143) 1 NC_015703.1 PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD; COGs: COG0287 Prephenate dehydrogenase; InterPro IPR003099; KEGG: sli:Slin_6542 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; PRIAM: Prephenate dehydrogenase; SPTR: Prephenate dehydrogenase; riboflavin biosynthesis protein RibD 3696143 10871694 Runsl_3162 Runella slithyformis DSM 19594 riboflavin biosynthesis protein RibD YP_004656675.1 3695085 R 761193 CDS YP_004656676.1 338212621 10871695 3696269..3697126 1 NC_015703.1 PFAM: Prephenate dehydrogenase; COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022; KEGG: dfe:Dfer_2974 carboxyl transferase; PFAM: Carboxyl transferase; PRIAM: Propionyl-CoA carboxylase; SPTR: Propionyl-CoA carboxylase beta chain; prephenate dehydrogenase 3697126 10871695 Runsl_3163 Runella slithyformis DSM 19594 prephenate dehydrogenase YP_004656676.1 3696269 D 761193 CDS YP_004656677.1 338212622 10871696 3697247..3698800 1 NC_015703.1 PFAM: Carboxyl transferase domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: msi:Msm_0775 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; propionyl-CoA carboxylase 3698800 10871696 Runsl_3164 Runella slithyformis DSM 19594 propionyl-CoA carboxylase YP_004656677.1 3697247 D 761193 CDS YP_004656678.1 338212623 10871697 complement(3698852..3699430) 1 NC_015703.1 COGs: COG3485 Protocatechuate 3 4-dioxygenase beta subunit; InterPro IPR000627; KEGG: rbi:RB2501_01006 hypothetical protein; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; SPTR: uncharacterized protein; AraC family transcriptional regulator 3699430 10871697 Runsl_3165 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004656678.1 3698852 R 761193 CDS YP_004656679.1 338212624 10871698 3700750..3701367 1 NC_015703.1 PFAM: Dioxygenase; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR008274:IPR006311; KEGG: dfe:Dfer_0732 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; PRIAM: Aldehyde dehydrogenase (pyrroloquinoline-quinone); SPTR: Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; intradiol ring-cleavage dioxygenase 3701367 10871698 Runsl_3166 Runella slithyformis DSM 19594 intradiol ring-cleavage dioxygenase YP_004656679.1 3700750 D 761193 CDS YP_004656680.1 338212625 10871699 complement(3701518..3703764) 1 NC_015703.1 PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; InterPro IPR001041:IPR002888; KEGG: sli:Slin_6243 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; Ferredoxin; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: (2Fe-2S)-binding domain protein; aldehyde dehydrogenase 3703764 10871699 Runsl_3167 Runella slithyformis DSM 19594 aldehyde dehydrogenase YP_004656680.1 3701518 R 761193 CDS YP_004656681.1 338212626 10871700 complement(3703803..3704258) 1 NC_015703.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: osp:Odosp_1109 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator; isoquinoline 1-oxidoreductase 3704258 10871700 Runsl_3168 Runella slithyformis DSM 19594 isoquinoline 1-oxidoreductase YP_004656681.1 3703803 R 761193 CDS YP_004656682.1 338212627 10871701 complement(3704366..3705268) 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG0656 Aldo/keto reductase related to diketogulonate reductase; InterPro IPR001395; KEGG: rca:Rcas_1051 2,5-didehydrogluconate reductase; PFAM: Aldo/keto reductase; PRIAM: Methylglyoxal reductase (NADPH-dependent); SPTR: aldo/keto reductase; AraC family transcriptional regulator 3705268 10871701 Runsl_3169 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004656682.1 3704366 R 761193 CDS YP_004656683.1 338212628 10871702 3705423..3706265 1 NC_015703.1 PFAM: Aldo/keto reductase; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR008274:IPR006311; KEGG: rbi:RB2501_01021 isoquinoline 1-oxidoreductase subunit beta; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; PRIAM: Isoquinoline 1-oxidoreductase; SPTR: Isoquinoline 1-oxidoreductase, beta subunit; methylglyoxal reductase 3706265 10871702 Runsl_3170 Runella slithyformis DSM 19594 methylglyoxal reductase YP_004656683.1 3705423 D 761193 CDS YP_004656684.1 338212629 10871703 3706495..3708744 1 NC_015703.1 PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; COGs: COG1280 threonine efflux protein; InterPro IPR001123; KEGG: tin:Tint_2220 lysine exporter protein (LysE/YggA); PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: Lysine exporter protein (LYSE/YGGA); isoquinoline 1-oxidoreductase 3708744 10871703 Runsl_3171 Runella slithyformis DSM 19594 isoquinoline 1-oxidoreductase YP_004656684.1 3706495 D 761193 CDS YP_004656685.1 338212630 10871704 3708771..3709400 1 NC_015703.1 PFAM: LysE type translocator; KEGG: sli:Slin_2427 hypothetical protein; SPTR: uncharacterized protein; lysine exporter protein LysE/YggA 3709400 10871704 Runsl_3172 Runella slithyformis DSM 19594 lysine exporter protein LysE/YggA YP_004656685.1 3708771 D 761193 CDS YP_004656686.1 338212631 10871705 complement(3709510..3710064) 1 NC_015703.1 COGs: COG1804 acyl-CoA transferase/carnitine dehydratase; InterPro IPR003673; KEGG: sru:SRU_2333 L-carnitine dehydratase; PFAM: CoA-transferase III; SPTR: Acyl CoA transferase/carnitine dehydratase; hypothetical protein 3710064 10871705 Runsl_3173 Runella slithyformis DSM 19594 hypothetical protein YP_004656686.1 3709510 R 761193 CDS YP_004656687.1 338212632 10871706 3710168..3711271 1 NC_015703.1 PFAM: CoA-transferase III; Prodigal; manually curated; L-carnitine dehydratase/bile acid-inducible protein F 3711271 10871706 Runsl_3174 Runella slithyformis DSM 19594 L-carnitine dehydratase/bile acid-inducible protein F YP_004656687.1 3710168 D 761193 CDS YP_004656688.1 338212633 10871709 complement(3714384..3714608) 1 NC_015703.1 hypothetical protein 3714608 10871709 Runsl_3177 Runella slithyformis DSM 19594 hypothetical protein YP_004656688.1 3714384 R 761193 CDS YP_004656689.1 338212634 10871710 complement(3714632..3714841) 1 NC_015703.1 KEGG: shg:Sph21_1894 hypothetical protein; SPTR: DNA-binding protein; hypothetical protein 3714841 10871710 Runsl_3178 Runella slithyformis DSM 19594 hypothetical protein YP_004656689.1 3714632 R 761193 CDS YP_004656690.1 338212635 10871711 complement(3714879..3715265) 1 NC_015703.1 PFAM: HTH domain; hypothetical protein 3715265 10871711 Runsl_3179 Runella slithyformis DSM 19594 hypothetical protein YP_004656690.1 3714879 R 761193 CDS YP_004656691.1 338212636 10871712 3715429..3715608 1 NC_015703.1 COGs: COG0237 Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase; InterPro IPR001977; KEGG: sli:Slin_6325 dephospho-CoA kinase; PRIAM: Dephospho-CoA kinase; SPTR: Dephospho-CoA kinase; TIGRFAM: Dephospho-CoA kinase; hypothetical protein 3715608 10871712 Runsl_3180 Runella slithyformis DSM 19594 hypothetical protein YP_004656691.1 3715429 D 761193 CDS YP_004656692.1 338212637 10871713 complement(3715598..3716185) 1 NC_015703.1 PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; KEGG: sli:Slin_6326 hypothetical protein; SPTR: uncharacterized protein; manually curated; dephospho-CoA kinase 3716185 10871713 Runsl_3181 Runella slithyformis DSM 19594 dephospho-CoA kinase YP_004656692.1 3715598 R 761193 CDS YP_004656693.1 338212638 10871714 complement(3716269..3717042) 1 NC_015703.1 COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: sli:Slin_6327 preprotein translocase, YajC subunit; PFAM: YajC; SPTR: Preprotein translocase, YajC subunit; TIGRFAM: YajC; hypothetical protein 3717042 10871714 Runsl_3182 Runella slithyformis DSM 19594 hypothetical protein YP_004656693.1 3716269 R 761193 CDS YP_004656694.1 338212639 10871715 complement(3717128..3717439) 1 NC_015703.1 PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit; InterPro IPR011467; KEGG: sli:Slin_6328 hypothetical protein; PFAM: Protein of unknown function DUF1573; SPTR: uncharacterized protein; preprotein translocase subunit YajC 3717439 10871715 Runsl_3183 Runella slithyformis DSM 19594 preprotein translocase subunit YajC YP_004656694.1 3717128 R 761193 CDS YP_004656695.1 338212640 10871716 complement(3717479..3717919) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1573); KEGG: dfe:Dfer_4925 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3717919 10871716 Runsl_3184 Runella slithyformis DSM 19594 hypothetical protein YP_004656695.1 3717479 R 761193 CDS YP_004656696.1 338212641 10871717 complement(3717932..3718234) 1 NC_015703.1 COGs: COG0781 Transcription termination factor; HAMAP: N utilization substance protein B-like protein; InterPro IPR006027:IPR011605; KEGG: dfe:Dfer_4924 NusB antitermination factor; PFAM: NusB/RsmB/TIM44; SPTR: NusB antitermination factor; TIGRFAM: NusB antitermination factor; hypothetical protein 3718234 10871717 Runsl_3185 Runella slithyformis DSM 19594 hypothetical protein YP_004656696.1 3717932 R 761193 CDS YP_004656697.1 338212642 10871718 complement(3718298..3719470) 1 NC_015703.1 PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB; COGs: COG0468 RecA/RadA recombinase; HAMAP: DNA recombination and repair protein RecA; InterPro IPR003593:IPR013765; KEGG: dfe:Dfer_0005 RecA protein; PFAM: DNA recombination and repair protein RecA; SMART: ATPase, AAA+ type, core; SPTR: Protein RecA; TIGRFAM: DNA recombination and repair protein RecA; NusB antitermination factor 3719470 10871718 Runsl_3186 Runella slithyformis DSM 19594 NusB antitermination factor YP_004656697.1 3718298 R 761193 CDS YP_004656698.1 338212643 10871719 3719801..3720859 1 NC_015703.1 PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA; COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: sli:Slin_3527 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase domain protein; recombinase A 3720859 10871719 Runsl_3187 Runella slithyformis DSM 19594 recombinase A YP_004656698.1 3719801 D 761193 CDS YP_004656699.1 338212644 10871720 complement(3721313..3722452) 1 NC_015703.1 PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR001732:IPR014026:IPR014027:IPR017476; KEGG: dfe:Dfer_3001 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: Nucleotide sugar dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase; butyryl-CoA dehydrogenase 3722452 10871720 Runsl_3188 Runella slithyformis DSM 19594 butyryl-CoA dehydrogenase YP_004656699.1 3721313 R 761193 CDS YP_004656700.1 338212645 10871721 3722852..3724168 1 NC_015703.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase, central domain; UDP-glucose/GDP-mannose dehydrogenase, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_3000 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucuronate decarboxylase; SPTR: NAD-dependent epimerase/dehydratase; nucleotide sugar dehydrogenase 3724168 10871721 Runsl_3189 Runella slithyformis DSM 19594 nucleotide sugar dehydrogenase YP_004656700.1 3722852 D 761193 CDS YP_004656701.1 338212646 10871722 3724175..3725146 1 NC_015703.1 PFAM: NAD dependent epimerase/dehydratase; COGs: COG1555 DNA uptake protein and related DNA-binding protein; KEGG: sli:Slin_1689 DNA uptake protein and related DNA-binding protein-like protein; SPTR: DNA uptake protein and related DNA-binding protein-like protein; UDP-glucuronate decarboxylase 3725146 10871722 Runsl_3190 Runella slithyformis DSM 19594 UDP-glucuronate decarboxylase YP_004656701.1 3724175 D 761193 CDS YP_004656702.1 338212647 10871723 complement(3725234..3726211) 1 NC_015703.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region; COGs: COG0423 Glycyl-tRNA synthetase (class II); InterPro IPR002314:IPR004154:IPR002315; KEGG: dfe:Dfer_4906 glycyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Anticodon-binding; SPTR: Glycyl-tRNA synthetase; TIGRFAM: Glycyl-tRNA synthetase, alpha2 dimer; DNA uptake protein-like protein 3726211 10871723 Runsl_3191 Runella slithyformis DSM 19594 DNA uptake protein-like protein YP_004656702.1 3725234 R 761193 CDS YP_004656703.1 338212648 10871724 3726332..3727831 1 NC_015703.1 PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: glycyl-tRNA synthetase, dimeric type; KEGG: sli:Slin_6509 hypothetical protein; SPTR: uncharacterized protein; glycyl-tRNA synthetase 3727831 10871724 Runsl_3192 Runella slithyformis DSM 19594 glycyl-tRNA synthetase YP_004656703.1 3726332 D 761193 CDS YP_004656704.1 338212649 10871725 complement(3727950..3728672) 1 NC_015703.1 COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: sli:Slin_6512 PadR family transcriptional regulator; PFAM: Transcriptional regulator PadR N-terminal-like; SPTR: Transcriptional regulator, PadR-like family; hypothetical protein 3728672 10871725 Runsl_3193 Runella slithyformis DSM 19594 hypothetical protein YP_004656704.1 3727950 R 761193 CDS YP_004656705.1 338212650 10871726 complement(3728669..3729022) 1 NC_015703.1 PFAM: Transcriptional regulator PadR-like family; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: dfe:Dfer_4778 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; PadR-like family transcriptional regulator 3729022 10871726 Runsl_3194 Runella slithyformis DSM 19594 PadR-like family transcriptional regulator YP_004656705.1 3728669 R 761193 CDS YP_004656706.1 338212651 10871727 3729101..3729733 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: sli:Slin_1620 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; hypothetical protein 3729733 10871727 Runsl_3195 Runella slithyformis DSM 19594 hypothetical protein YP_004656706.1 3729101 D 761193 CDS YP_004656707.1 338212652 10871728 3729830..3730984 1 NC_015703.1 PFAM: Major Facilitator Superfamily; InterPro IPR003544; KEGG: sli:Slin_1448 cytochrome c biogenesis protein CcmB; PFAM: Cytochrome c-type biogenesis protein CcmB; SPTR: Cytochrome c-type biogenesis protein CcmB; major facilitator superfamily protein 3730984 10871728 Runsl_3196 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004656707.1 3729830 D 761193 CDS YP_004656708.1 338212653 10871729 3731092..3731754 1 NC_015703.1 PFAM: CcmB protein; InterPro IPR002541; KEGG: sli:Slin_1447 cytochrome c assembly protein; PFAM: Cytochrome c assembly protein; SPTR: Cytochrome c assembly protein; cytochrome c-type biogenesis protein CcmB 3731754 10871729 Runsl_3197 Runella slithyformis DSM 19594 cytochrome c-type biogenesis protein CcmB YP_004656708.1 3731092 D 761193 CDS YP_004656709.1 338212654 10871730 3731840..3732499 1 NC_015703.1 PFAM: Cytochrome C assembly protein; KEGG: sli:Slin_1446 hypothetical protein; SPTR: uncharacterized protein; cytochrome c assembly protein 3732499 10871730 Runsl_3198 Runella slithyformis DSM 19594 cytochrome c assembly protein YP_004656709.1 3731840 D 761193 CDS YP_004656710.1 338212655 10871731 3732523..3732747 1 NC_015703.1 KEGG: ana:asr0148 hypothetical protein; SPTR: Asr0148 protein; hypothetical protein 3732747 10871731 Runsl_3199 Runella slithyformis DSM 19594 hypothetical protein YP_004656710.1 3732523 D 761193 CDS YP_004656711.1 338212656 10871732 3732744..3732953 1 NC_015703.1 PFAM: Protein of unknown function (DUF2281); COGs: COG3744 conserved hypothetical protein; InterPro IPR002716; KEGG: cch:Cag_0280 hypothetical protein; PFAM: PilT protein, N-terminal; SPTR: uncharacterized protein; hypothetical protein 3732953 10871732 Runsl_3200 Runella slithyformis DSM 19594 hypothetical protein YP_004656711.1 3732744 D 761193 CDS YP_004656712.1 338212657 10871733 3732950..3733333 1 NC_015703.1 PFAM: PIN domain; KEGG: dfe:Dfer_5081 hypothetical protein; SPTR: uncharacterized protein; twitching motility protein PilT 3733333 10871733 Runsl_3201 Runella slithyformis DSM 19594 twitching motility protein PilT YP_004656712.1 3732950 D 761193 CDS YP_004656713.1 338212658 10871734 3733327..3733788 1 NC_015703.1 PFAM: CcmE; COGs: COG1138 Cytochrome c biogenesis factor; InterPro IPR002541; KEGG: dfe:Dfer_5080 cytochrome c assembly protein; PFAM: Cytochrome c assembly protein; SPTR: Cytochrome c assembly protein; manually curated; hypothetical protein 3733788 10871734 Runsl_3202 Runella slithyformis DSM 19594 hypothetical protein YP_004656713.1 3733327 D 761193 CDS YP_004656714.1 338212659 10871735 3733855..3736413 1 NC_015703.1 PFAM: Cytochrome C assembly protein; TIGRFAM: c-type cytochrome biogenesis protein CcmF; KEGG: sli:Slin_0299 hypothetical protein; SPTR: uncharacterized protein; cytochrome c assembly protein 3736413 10871735 Runsl_3203 Runella slithyformis DSM 19594 cytochrome c assembly protein YP_004656714.1 3733855 D 761193 CDS YP_004656715.1 338212660 10871736 3736531..3737127 1 NC_015703.1 KEGG: dfe:Dfer_3944 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3737127 10871736 Runsl_3204 Runella slithyformis DSM 19594 hypothetical protein YP_004656715.1 3736531 D 761193 CDS YP_004656716.1 338212661 10871737 complement(3737220..3737657) 1 NC_015703.1 COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006140; KEGG: sli:Slin_2228 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; SPTR: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; hypothetical protein 3737657 10871737 Runsl_3205 Runella slithyformis DSM 19594 hypothetical protein YP_004656716.1 3737220 R 761193 CDS YP_004656717.1 338212662 10871738 complement(3737678..3738613) 1 NC_015703.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 3738613 10871738 Runsl_3206 Runella slithyformis DSM 19594 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein YP_004656717.1 3737678 R 761193 CDS YP_004656718.1 338212663 10871739 3738719..3738844 1 NC_015703.1 KEGG: sli:Slin_4490 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3738844 10871739 Runsl_3207 Runella slithyformis DSM 19594 hypothetical protein YP_004656718.1 3738719 D 761193 CDS YP_004656719.1 338212664 10871740 complement(3738956..3741418) 1 NC_015703.1 COGs: COG4731 conserved hypothetical protein; InterPro IPR019223; KEGG: psn:Pedsa_0847 protein of unknown function DUF2147; PFAM: Protein of unknown function DUF2147; SPTR: uncharacterized protein; hypothetical protein 3741418 10871740 Runsl_3208 Runella slithyformis DSM 19594 hypothetical protein YP_004656719.1 3738956 R 761193 CDS YP_004656720.1 338212665 10871741 3741678..3742136 1 NC_015703.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2147); KEGG: dfe:Dfer_0343 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3742136 10871741 Runsl_3209 Runella slithyformis DSM 19594 hypothetical protein YP_004656720.1 3741678 D 761193 CDS YP_004656721.1 338212666 10871742 complement(3742185..3743192) 1 NC_015703.1 KEGG: sli:Slin_3991 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3743192 10871742 Runsl_3210 Runella slithyformis DSM 19594 hypothetical protein YP_004656721.1 3742185 R 761193 CDS YP_004656722.1 338212667 10871743 complement(3743801..3744433) 1 NC_015703.1 KEGG: sli:Slin_3992 hypothetical protein; SPTR: uncharacterized protein; manually curated; hypothetical protein 3744433 10871743 Runsl_3211 Runella slithyformis DSM 19594 hypothetical protein YP_004656722.1 3743801 R 761193 CDS YP_004656723.1 338212668 10871744 complement(3744447..3746036) 1 NC_015703.1 InterPro IPR012910:IPR000531; KEGG: sli:Slin_3993 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein 3746036 10871744 Runsl_3212 Runella slithyformis DSM 19594 hypothetical protein YP_004656723.1 3744447 R 761193 CDS YP_004656724.1 338212669 10871745 complement(3746057..3749260) 1 NC_015703.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; Prodigal; manually curated; TonB-dependent receptor plug 3749260 10871745 Runsl_3213 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004656724.1 3746057 R 761193 CDS YP_004656725.1 338212670 10871748 complement(3750445..3751338) 1 NC_015703.1 PFAM: NAD dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3751338 10871748 Runsl_3216 Runella slithyformis DSM 19594 NAD-dependent epimerase/dehydratase YP_004656725.1 3750445 R 761193 CDS YP_004656726.1 338212671 10871749 complement(3751340..3751528) 1 NC_015703.1 COGs: COG5654 conserved hypothetical protein; InterPro IPR014914; KEGG: cts:Ctha_2678 RES domain-containing protein; PFAM: RES; SPTR: uncharacterized protein; hypothetical protein 3751528 10871749 Runsl_3217 Runella slithyformis DSM 19594 hypothetical protein YP_004656726.1 3751340 R 761193 CDS YP_004656727.1 338212672 10871750 complement(3751576..3752049) 1 NC_015703.1 PFAM: RES domain; COGs: COG5642 conserved hypothetical protein; InterPro IPR011979; KEGG: zpr:ZPR_0343 hypothetical protein; PFAM: Conserved hypothetical protein CHP02293; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02293; RES domain-containing protein 3752049 10871750 Runsl_3218 Runella slithyformis DSM 19594 RES domain-containing protein YP_004656727.1 3751576 R 761193 CDS YP_004656728.1 338212673 10871751 complement(3752049..3752549) 1 NC_015703.1 PFAM: Protein of unknown function (DUF2384); TIGRFAM: toxin-antitoxin system antitoxin component, TIGR02293 family; InterPro IPR003409; KEGG: ptm:GSPATT00011040001 hypothetical protein; PFAM: MORN motif; SPTR: Chromosome undetermined scaffold_29, whole genome shotgun sequence; hypothetical protein 3752549 10871751 Runsl_3219 Runella slithyformis DSM 19594 hypothetical protein YP_004656728.1 3752049 R 761193 CDS YP_004656729.1 338212674 10871752 complement(3753139..3754320) 1 NC_015703.1 COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: mev:Metev_2271 APHP domain-containing protein; SPTR: WD40-like Beta Propeller; MORN repeat-containing protein 3754320 10871752 Runsl_3220 Runella slithyformis DSM 19594 MORN repeat-containing protein YP_004656729.1 3753139 R 761193 CDS YP_004656730.1 338212675 10871753 complement(3754384..3755334) 1 NC_015703.1 PFAM: WD40-like Beta Propeller Repeat; InterPro IPR001846; KEGG: sur:STAUR_4950 hypothetical protein; PFAM: von Willebrand factor, type D; SPTR: Genome sequencing data, contig C314; hypothetical protein 3755334 10871753 Runsl_3221 Runella slithyformis DSM 19594 hypothetical protein YP_004656730.1 3754384 R 761193 CDS YP_004656731.1 338212676 10871754 complement(3755403..3757682) 1 NC_015703.1 PFAM: von Willebrand factor type D domain; von Willebrand factor A 3757682 10871754 Runsl_3222 Runella slithyformis DSM 19594 von Willebrand factor A YP_004656731.1 3755403 R 761193 CDS YP_004656732.1 338212677 10871755 complement(3757712..3758905) 1 NC_015703.1 COGs: COG3920 Signal transduction histidine kinase; InterPro IPR011495:IPR003594; KEGG: dfe:Dfer_1629 signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor region; ATP-binding region, ATPase-like; SPTR: Signal transduction histidine kinase; hypothetical protein 3758905 10871755 Runsl_3223 Runella slithyformis DSM 19594 hypothetical protein YP_004656732.1 3757712 R 761193 CDS YP_004656733.1 338212678 10871756 3759132..3760859 1 NC_015703.1 PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_1630 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; signal transduction histidine kinase 3760859 10871756 Runsl_3224 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004656733.1 3759132 D 761193 CDS YP_004656734.1 338212679 10871757 3760869..3761663 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG4354 bile acid beta-glucosidase; InterPro IPR006775; KEGG: sli:Slin_6449 hypothetical protein; SPTR: uncharacterized protein; LytTR family two component transcriptional regulator 3761663 10871757 Runsl_3225 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004656734.1 3760869 D 761193 CDS YP_004656735.1 338212680 10871758 complement(3761843..3764410) 1 NC_015703.1 PFAM: beta-Glucocerebrosidase 2 N terminal; Protein of unknown function, DUF608; COGs: COG0388 amidohydrolase; InterPro IPR000182:IPR003010; KEGG: cts:Ctha_0190 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; GCN5-related N-acetyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; hypothetical protein 3764410 10871758 Runsl_3226 Runella slithyformis DSM 19594 hypothetical protein YP_004656735.1 3761843 R 761193 CDS YP_004656736.1 338212681 10871759 complement(3764638..3766197) 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; Carbon-nitrogen hydrolase; KEGG: dfe:Dfer_4533 hypothetical protein; SPTR: uncharacterized protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3766197 10871759 Runsl_3227 Runella slithyformis DSM 19594 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004656736.1 3764638 R 761193 CDS YP_004656737.1 338212682 10871760 complement(3766516..3767814) 1 NC_015703.1 KEGG: mtt:Ftrac_2027 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3767814 10871760 Runsl_3228 Runella slithyformis DSM 19594 hypothetical protein YP_004656737.1 3766516 R 761193 CDS YP_004656738.1 338212683 10871761 complement(3767830..3769074) 1 NC_015703.1 KEGG: rbi:RB2501_03795 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3769074 10871761 Runsl_3229 Runella slithyformis DSM 19594 hypothetical protein YP_004656738.1 3767830 R 761193 CDS YP_004656739.1 338212684 10871762 complement(3769087..3770160) 1 NC_015703.1 COGs: COG3590 metalloendopeptidase; InterPro IPR008753:IPR018497; KEGG: sli:Slin_1065 endothelin-converting enzyme 1; PFAM: Peptidase M13; Peptidase M13, neprilysin, C-terminal; PRIAM: Endothelin-converting enzyme 1; SPTR: Endothelin-converting enzyme 1; hypothetical protein 3770160 10871762 Runsl_3230 Runella slithyformis DSM 19594 hypothetical protein YP_004656739.1 3769087 R 761193 CDS YP_004656740.1 338212685 10871763 3770377..3772410 1 NC_015703.1 PFAM: Peptidase M13; KEGG: sli:Slin_1514 hypothetical protein; SPTR: uncharacterized protein; endothelin-converting enzyme 1 3772410 10871763 Runsl_3231 Runella slithyformis DSM 19594 endothelin-converting enzyme 1 YP_004656740.1 3770377 D 761193 CDS YP_004656741.1 338212686 10871764 3772435..3773484 1 NC_015703.1 KEGG: dfe:Dfer_3041 secreted protein; SPTR: secreted protein; hypothetical protein 3773484 10871764 Runsl_3232 Runella slithyformis DSM 19594 hypothetical protein YP_004656741.1 3772435 D 761193 CDS YP_004656742.1 338212687 10871765 3773715..3775040 1 NC_015703.1 PFAM: Glycosyl hydrolases family 2, TIM barrel domain; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: cpi:Cpin_3128 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; hypothetical protein 3775040 10871765 Runsl_3233 Runella slithyformis DSM 19594 hypothetical protein YP_004656742.1 3773715 D 761193 CDS YP_004656743.1 338212688 10871766 3775037..3778777 1 NC_015703.1 PFAM: Glycosyl transferase 2; Glycosyl hydrolase 26; KEGG: ilo:IL0647 hypothetical protein; SPTR: uncharacterized protein; family 2 glycosyl transferase 3778777 10871766 Runsl_3234 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004656743.1 3775037 D 761193 CDS YP_004656744.1 338212689 10871767 complement(3778957..3779319) 1 NC_015703.1 hypothetical protein 3779319 10871767 Runsl_3235 Runella slithyformis DSM 19594 hypothetical protein YP_004656744.1 3778957 R 761193 CDS YP_004656745.1 338212690 10871768 complement(3779279..3779392) 1 NC_015703.1 COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: cao:Celal_2798 transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase; hypothetical protein 3779392 10871768 Runsl_3236 Runella slithyformis DSM 19594 hypothetical protein YP_004656745.1 3779279 R 761193 CDS YP_004656746.1 338212691 10871769 complement(3779452..3780435) 1 NC_015703.1 PFAM: Transposase; KEGG: dfe:Dfer_4027 hypothetical protein; SPTR: uncharacterized protein; transposase IS204/IS1001/IS1096/IS1165 family protein 3780435 10871769 Runsl_3237 Runella slithyformis DSM 19594 transposase IS204/IS1001/IS1096/IS1165 family protein YP_004656746.1 3779452 R 761193 CDS YP_004656747.1 338212692 10871770 complement(3780416..3780778) 1 NC_015703.1 hypothetical protein 3780778 10871770 Runsl_3238 Runella slithyformis DSM 19594 hypothetical protein YP_004656747.1 3780416 R 761193 CDS YP_004656748.1 338212693 10871771 3780988..3781272 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 3781272 10871771 Runsl_3239 Runella slithyformis DSM 19594 hypothetical protein YP_004656748.1 3780988 D 761193 CDS YP_004656749.1 338212694 10871774 3782820..3784472 1 NC_015703.1 TIGRFAM: alpha-glucan phosphorylases; InterPro IPR000182; KEGG: lby:Lbys_1327 diamine N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase (GNAT) family protein; alpha-glucan phosphorylase 3784472 10871774 Runsl_3241 Runella slithyformis DSM 19594 alpha-glucan phosphorylase YP_004656749.1 3782820 D 761193 CDS YP_004656750.1 338212695 10871775 complement(3784542..3784982) 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: cpi:Cpin_1321 glycosyl transferase 39; PFAM: Glycosyl transferase, family 39; SPTR: Dolichyl-phosphate-mannose-protein mannosyltransferase; N-acetyltransferase GCN5 3784982 10871775 Runsl_3242 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004656750.1 3784542 R 761193 CDS YP_004656751.1 338212696 10871776 complement(3785222..3787087) 1 NC_015703.1 InterPro IPR000326; KEGG: sli:Slin_5970 phosphoesterase PA-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: Phosphoesterase PA-phosphatase related protein; glycosyl transferase family protein 3787087 10871776 Runsl_3243 Runella slithyformis DSM 19594 glycosyl transferase family protein YP_004656751.1 3785222 R 761193 CDS YP_004656752.1 338212697 10871777 complement(3787140..3787769) 1 NC_015703.1 PFAM: PAP2 superfamily; KEGG: sli:Slin_4010 hypothetical protein; SPTR: uncharacterized protein; phosphoesterase PA-phosphatase-like protein 3787769 10871777 Runsl_3244 Runella slithyformis DSM 19594 phosphoesterase PA-phosphatase-like protein YP_004656752.1 3787140 R 761193 CDS YP_004656753.1 338212698 10871778 3787820..3788674 1 NC_015703.1 InterPro IPR005651; KEGG: mtt:Ftrac_2331 hypothetical protein; PFAM: Protein of unknown function DUF343; SPTR: uncharacterized protein; hypothetical protein 3788674 10871778 Runsl_3245 Runella slithyformis DSM 19594 hypothetical protein YP_004656753.1 3787820 D 761193 CDS YP_004656754.1 338212699 10871779 complement(3788692..3788952) 1 NC_015703.1 PFAM: Trm112p-like protein; COGs: COG0352 Thiamine monophosphate synthase; InterPro IPR003733; KEGG: ran:Riean_0486 thiamine monophosphate synthase; PFAM: Thiamine monophosphate synthase; SPTR: Thiamine monophosphate synthase; hypothetical protein 3788952 10871779 Runsl_3246 Runella slithyformis DSM 19594 hypothetical protein YP_004656754.1 3788692 R 761193 CDS YP_004656755.1 338212700 10871780 complement(3788949..3789590) 1 NC_015703.1 PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase; COGs: COG0309 Hydrogenase maturation factor; InterPro IPR000728:IPR010918; KEGG: ran:Riean_0487 air synthase related protein domain protein; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; SPTR: AIR synthase domain protein; thiamine monophosphate synthase 3789590 10871780 Runsl_3247 Runella slithyformis DSM 19594 thiamine monophosphate synthase YP_004656755.1 3788949 R 761193 CDS YP_004656756.1 338212701 10871781 complement(3789587..3790645) 1 NC_015703.1 PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: mtt:Ftrac_2328 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: SAM-dependent methyltransferase; AIR synthase-like protein domain-containing protein 3790645 10871781 Runsl_3248 Runella slithyformis DSM 19594 AIR synthase-like protein domain-containing protein YP_004656756.1 3789587 R 761193 CDS YP_004656757.1 338212702 10871782 complement(3790701..3791399) 1 NC_015703.1 PFAM: Methyltransferase domain; COGs: COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor; KEGG: sli:Slin_6617 oxidoreductase; SPTR: Oxidoreductase; type 11 methyltransferase 3791399 10871782 Runsl_3249 Runella slithyformis DSM 19594 type 11 methyltransferase YP_004656757.1 3790701 R 761193 CDS YP_004656758.1 338212703 10871783 complement(3791578..3792603) 1 NC_015703.1 PFAM: BNR/Asp-box repeat; COGs: COG0793 Periplasmic protease; InterPro IPR005151; KEGG: sli:Slin_1888 peptidase S41; PFAM: Peptidase S41; SMART: Peptidase S41; SPTR: Peptidase S41; oxidoreductase 3792603 10871783 Runsl_3250 Runella slithyformis DSM 19594 oxidoreductase YP_004656758.1 3791578 R 761193 CDS YP_004656759.1 338212704 10871784 3792722..3794128 1 NC_015703.1 PFAM: Peptidase S41; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_3760 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; peptidase S41 3794128 10871784 Runsl_3251 Runella slithyformis DSM 19594 peptidase S41 YP_004656759.1 3792722 D 761193 CDS YP_004656760.1 338212705 10871785 complement(3794207..3794932) 1 NC_015703.1 PFAM: ABC transporter; phosphonate-transporting ATPase 3794932 10871785 Runsl_3252 Runella slithyformis DSM 19594 phosphonate-transporting ATPase YP_004656760.1 3794207 R 761193 CDS YP_004656761.1 338212706 10871786 complement(3794994..3795503) 1 NC_015703.1 KEGG: bco:Bcell_1176 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3795503 10871786 Runsl_3253 Runella slithyformis DSM 19594 hypothetical protein YP_004656761.1 3794994 R 761193 CDS YP_004656762.1 338212707 10871787 complement(3795505..3796593) 1 NC_015703.1 KEGG: dfe:Dfer_3762 tetratricopeptide domain protein; SPTR: Tetratricopeptide domain protein; hypothetical protein 3796593 10871787 Runsl_3254 Runella slithyformis DSM 19594 hypothetical protein YP_004656762.1 3795505 R 761193 CDS YP_004656763.1 338212708 10871788 complement(3796663..3799266) 1 NC_015703.1 hypothetical protein 3799266 10871788 Runsl_3255 Runella slithyformis DSM 19594 hypothetical protein YP_004656763.1 3796663 R 761193 CDS YP_004656764.1 338212709 10871789 3799302..3799478 1 NC_015703.1 COGs: COG1538 Outer membrane protein; KEGG: cpi:Cpin_7078 outer membrane protein; SPTR: Outer membrane efflux protein; hypothetical protein 3799478 10871789 Runsl_3256 Runella slithyformis DSM 19594 hypothetical protein YP_004656764.1 3799302 D 761193 CDS YP_004656765.1 338212710 10871790 complement(3799403..3800980) 1 NC_015703.1 PFAM: Outer membrane efflux protein; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: sli:Slin_4444 cation/multidrug efflux pump-like protein; PFAM: Acriflavin resistance protein; SPTR: Cation/multidrug efflux pump-like protein; hypothetical protein 3800980 10871790 Runsl_3257 Runella slithyformis DSM 19594 hypothetical protein YP_004656765.1 3799403 R 761193 CDS YP_004656766.1 338212711 10871791 complement(3801168..3804485) 1 NC_015703.1 PFAM: AcrB/AcrD/AcrF family; Prodigal; manually curated; acriflavin resistance protein 3804485 10871791 Runsl_3258 Runella slithyformis DSM 19594 acriflavin resistance protein YP_004656766.1 3801168 R 761193 CDS YP_004656767.1 338212712 10871793 3805702..3806868 1 NC_015703.1 hypothetical protein 3806868 10871793 Runsl_3260 Runella slithyformis DSM 19594 hypothetical protein YP_004656767.1 3805702 D 761193 CDS YP_004656768.1 338212713 10871794 3806819..3807271 1 NC_015703.1 InterPro IPR007367; KEGG: dfe:Dfer_5692 protein of unknown function DUF433; PFAM: Protein of unknown function DUF433; SPTR: uncharacterized protein; hypothetical protein 3807271 10871794 Runsl_3261 Runella slithyformis DSM 19594 hypothetical protein YP_004656768.1 3806819 D 761193 CDS YP_004656769.1 338212714 10871795 complement(3807372..3807614) 1 NC_015703.1 PFAM: Protein of unknown function (DUF433); COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sli:Slin_4438 efflux transporter RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; hypothetical protein 3807614 10871795 Runsl_3262 Runella slithyformis DSM 19594 hypothetical protein YP_004656769.1 3807372 R 761193 CDS YP_004656770.1 338212715 10871796 3807786..3808859 1 NC_015703.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792; KEGG: lby:Lbys_1269 two component transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: Two component transcriptional regulator, LuxR family protein; RND family efflux transporter MFP subunit 3808859 10871796 Runsl_3263 Runella slithyformis DSM 19594 RND family efflux transporter MFP subunit YP_004656770.1 3807786 D 761193 CDS YP_004656771.1 338212716 10871797 3808867..3809517 1 NC_015703.1 PFAM: Bacterial regulatory proteins, luxR family; LuxR family transcriptional regulator 3809517 10871797 Runsl_3264 Runella slithyformis DSM 19594 LuxR family transcriptional regulator YP_004656771.1 3808867 D 761193 CDS YP_004656772.1 338212717 10871798 3809749..3809871 1 NC_015703.1 hypothetical protein 3809871 10871798 Runsl_3265 Runella slithyformis DSM 19594 hypothetical protein YP_004656772.1 3809749 D 761193 CDS YP_004656773.1 338212718 10871799 3810036..3811073 1 NC_015703.1 hypothetical protein 3811073 10871799 Runsl_3266 Runella slithyformis DSM 19594 hypothetical protein YP_004656773.1 3810036 D 761193 CDS YP_004656774.1 338212719 10871800 3811090..3811500 1 NC_015703.1 hypothetical protein 3811500 10871800 Runsl_3267 Runella slithyformis DSM 19594 hypothetical protein YP_004656774.1 3811090 D 761193 CDS YP_004656775.1 338212720 10871801 3811451..3811927 1 NC_015703.1 hypothetical protein 3811927 10871801 Runsl_3268 Runella slithyformis DSM 19594 hypothetical protein YP_004656775.1 3811451 D 761193 CDS YP_004656776.1 338212721 10871802 complement(3811958..3812215) 1 NC_015703.1 hypothetical protein 3812215 10871802 Runsl_3269 Runella slithyformis DSM 19594 hypothetical protein YP_004656776.1 3811958 R 761193 CDS YP_004656777.1 338212722 10871803 3812243..3813214 1 NC_015703.1 hypothetical protein 3813214 10871803 Runsl_3270 Runella slithyformis DSM 19594 hypothetical protein YP_004656777.1 3812243 D 761193 CDS YP_004656778.1 338212723 10871804 3813162..3813860 1 NC_015703.1 KEGG: ppn:Palpr_1115 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3813860 10871804 Runsl_3271 Runella slithyformis DSM 19594 hypothetical protein YP_004656778.1 3813162 D 761193 CDS YP_004656779.1 338212724 10871805 3813906..3814787 1 NC_015703.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: sli:Slin_4437 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; hypothetical protein 3814787 10871805 Runsl_3272 Runella slithyformis DSM 19594 hypothetical protein YP_004656779.1 3813906 D 761193 CDS YP_004656780.1 338212725 10871806 3814890..3818033 1 NC_015703.1 PFAM: AcrB/AcrD/AcrF family; InterPro IPR007452; KEGG: dfe:Dfer_3011 hypothetical protein; PFAM: Protein of unknown function DUF490; SPTR: uncharacterized protein; acriflavin resistance protein 3818033 10871806 Runsl_3273 Runella slithyformis DSM 19594 acriflavin resistance protein YP_004656780.1 3814890 D 761193 CDS YP_004656781.1 338212726 10871807 complement(3818419..3823008) 1 NC_015703.1 PFAM: Family of unknown function (DUF490); COGs: COG0533 Metal-dependent protease with possible chaperone activity; HAMAP: O-sialoglycoprotein endopeptidase; InterPro IPR000905:IPR017861; KEGG: dfe:Dfer_3012 metalloendopeptidase, glycoprotease; PFAM: Peptidase M22, glycoprotease; PRIAM: O-sialoglycoprotein endopeptidase; SPTR: Probable O-sialoglycoprotein endopeptidase; TIGRFAM: glycoprotease GCP; Peptidase M22, glycoprotease, subgroup; hypothetical protein 3823008 10871807 Runsl_3274 Runella slithyformis DSM 19594 hypothetical protein YP_004656781.1 3818419 R 761193 CDS YP_004656782.1 338212727 10871808 3823104..3824105 1 NC_015703.1 PFAM: Glycoprotease; TIGRFAM: glycoprotease GCP; metallohydrolase, glycoprotease/Kae1 family; universal bacterial protein YeaZ; O-sialoglycoprotein endopeptidase 3824105 10871808 Runsl_3275 Runella slithyformis DSM 19594 O-sialoglycoprotein endopeptidase YP_004656782.1 3823104 D 761193 CDS YP_004656783.1 338212728 10871809 3824772..3825038 1 NC_015703.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR003018:IPR000014:IPR001610:IPR003661:IPR 003594:IPR001789:IPR013655:IPR013767:IPR013656; KEGG: sli:Slin_0621 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; PAS fold-3; PAS fold; PAS fold-4; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; GAF; PAC motif; Signal transduction response regulator, receiver region; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; hypothetical protein 3825038 10871809 Runsl_3276 Runella slithyformis DSM 19594 hypothetical protein YP_004656783.1 3824772 D 761193 CDS YP_004656784.1 338212729 10871810 3825824..3830197 1 NC_015703.1 PFAM: GAF domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: dfe:Dfer_3162 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; multi-sensor hybrid histidine kinase 3830197 10871810 Runsl_3277 Runella slithyformis DSM 19594 multi-sensor hybrid histidine kinase YP_004656784.1 3825824 D 761193 CDS YP_004656785.1 338212730 10871811 complement(3830235..3831602) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG3386 Gluconolactonase; InterPro IPR013658; KEGG: sli:Slin_0076 SMP-30/gluconolaconase/LRE domain protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; SPTR: SMP-30/Gluconolaconase/LRE domain protein; oxidoreductase domain-containing protein 3831602 10871811 Runsl_3278 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004656785.1 3830235 R 761193 CDS YP_004656786.1 338212731 10871812 complement(3831742..3832650) 1 NC_015703.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; SMP-30/gluconolaconase/LRE-like region-containing protein 3832650 10871812 Runsl_3279 Runella slithyformis DSM 19594 SMP-30/gluconolaconase/LRE-like region-containing protein YP_004656786.1 3831742 R 761193 CDS YP_004656787.1 338212732 10871813 complement(3832741..3833241) 1 NC_015703.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: sli:Slin_0503 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: Two-component system response regulator, LytR/AlgR family; hypothetical protein 3833241 10871813 Runsl_3280 Runella slithyformis DSM 19594 hypothetical protein YP_004656787.1 3832741 R 761193 CDS YP_004656788.1 338212733 10871814 complement(3833262..3833627) 1 NC_015703.1 PFAM: LytTr DNA-binding domain; InterPro IPR006626; KEGG: gsu:GSU0754 fibronectin type III domain-containing protein; SPTR: Outer membrane autotransporter; response regulator receiver protein 3833627 10871814 Runsl_3281 Runella slithyformis DSM 19594 response regulator receiver protein YP_004656788.1 3833262 R 761193 CDS YP_004656789.1 338212734 10871815 complement(3833636..3838684) 1 NC_015703.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_6125 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; hypothetical protein 3838684 10871815 Runsl_3282 Runella slithyformis DSM 19594 hypothetical protein YP_004656789.1 3833636 R 761193 CDS YP_004656790.1 338212735 10871816 3839023..3839736 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: sli:Slin_6126 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase; LytTR family two component transcriptional regulator 3839736 10871816 Runsl_3283 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004656790.1 3839023 D 761193 CDS YP_004656791.1 338212736 10871817 3839782..3841638 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; histidine kinase 3841638 10871817 Runsl_3284 Runella slithyformis DSM 19594 histidine kinase YP_004656791.1 3839782 D 761193 CDS YP_004656792.1 338212737 10871818 3841715..3841891 1 NC_015703.1 COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: mtt:Ftrac_2592 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; SPTR: Histone family protein DNA-binding protein; hypothetical protein 3841891 10871818 Runsl_3285 Runella slithyformis DSM 19594 hypothetical protein YP_004656792.1 3841715 D 761193 CDS YP_004656793.1 338212738 10871819 complement(3841918..3842193) 1 NC_015703.1 PFAM: Bacterial DNA-binding protein; KEGG: osp:Odosp_1433 hypothetical protein; SPTR: uncharacterized protein; histone family protein DNA-binding protein 3842193 10871819 Runsl_3286 Runella slithyformis DSM 19594 histone family protein DNA-binding protein YP_004656793.1 3841918 R 761193 CDS YP_004656794.1 338212739 10871820 complement(3842144..3842602) 1 NC_015703.1 InterPro IPR000595; KEGG: mtt:Ftrac_2031 transcriptional regulator, crp/fnr family; PFAM: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; hypothetical protein 3842602 10871820 Runsl_3287 Runella slithyformis DSM 19594 hypothetical protein YP_004656794.1 3842144 R 761193 CDS YP_004656795.1 338212740 10871821 complement(3842630..3843199) 1 NC_015703.1 PFAM: Cyclic nucleotide-binding domain; cyclic nucleotide-binding protein 3843199 10871821 Runsl_3288 Runella slithyformis DSM 19594 cyclic nucleotide-binding protein YP_004656795.1 3842630 R 761193 CDS YP_004656796.1 338212741 10871822 3843538..3843786 1 NC_015703.1 COGs: COG1171 Threonine dehydratase; InterPro IPR001926; KEGG: sli:Slin_1010 pyridoxal-5'-phosphate-dependent protein subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Serine racemase; SPTR: Pyridoxal-5'-phosphate-dependent protein beta subunit; hypothetical protein 3843786 10871822 Runsl_3289 Runella slithyformis DSM 19594 hypothetical protein YP_004656796.1 3843538 D 761193 CDS YP_004656797.1 338212742 10871823 3843854..3844825 1 NC_015703.1 PFAM: Pyridoxal-phosphate dependent enzyme; COGs: COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA; InterPro IPR010386; KEGG: dfe:Dfer_2373 tRNA-hydroxylase; PFAM: tRNA--hydroxylase; SPTR: tRNA-hydroxylase; serine racemase 3844825 10871823 Runsl_3290 Runella slithyformis DSM 19594 serine racemase YP_004656797.1 3843854 D 761193 CDS YP_004656798.1 338212743 10871824 3844941..3845531 1 NC_015703.1 PFAM: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); COGs: COG1252 NADH dehydrogenase FAD-containing subunit; InterPro IPR013027; KEGG: sli:Slin_5734 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: NADH dehydrogenase (ubiquinone); SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; tRNA-hydroxylase 3845531 10871824 Runsl_3291 Runella slithyformis DSM 19594 tRNA-hydroxylase YP_004656798.1 3844941 D 761193 CDS YP_004656799.1 338212744 10871825 3845948..3847288 1 NC_015703.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; manually curated; NADH dehydrogenase (ubiquinone) 3847288 10871825 Runsl_3292 Runella slithyformis DSM 19594 NADH dehydrogenase (ubiquinone) YP_004656799.1 3845948 D 761193 CDS YP_004656800.1 338212745 10871827 complement(3848001..3848183) 1 NC_015703.1 KEGG: ral:Rumal_0689 hypothetical protein; SPTR: ATP/GTP-binding protein; hypothetical protein 3848183 10871827 Runsl_3294 Runella slithyformis DSM 19594 hypothetical protein YP_004656800.1 3848001 R 761193 CDS YP_004656801.1 338212746 10871828 complement(3848283..3849794) 1 NC_015703.1 InterPro IPR001387; KEGG: hdu:HD1096 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix domain protein; hypothetical protein 3849794 10871828 Runsl_3295 Runella slithyformis DSM 19594 hypothetical protein YP_004656801.1 3848283 R 761193 CDS YP_004656802.1 338212747 10871829 complement(3849834..3850385) 1 NC_015703.1 PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein 3850385 10871829 Runsl_3296 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004656802.1 3849834 R 761193 CDS YP_004656803.1 338212748 10871830 complement(3850336..3850440) 1 NC_015703.1 hypothetical protein 3850440 10871830 Runsl_3297 Runella slithyformis DSM 19594 hypothetical protein YP_004656803.1 3850336 R 761193 CDS YP_004656804.1 338212749 10871831 3850473..3850694 1 NC_015703.1 InterPro IPR002104; KEGG: bvu:BVU_2095 transposase; PFAM: Integrase, catalytic core, phage; SPTR: Site-specific recombinase, phage integrase; hypothetical protein 3850694 10871831 Runsl_3298 Runella slithyformis DSM 19594 hypothetical protein YP_004656804.1 3850473 D 761193 CDS YP_004656805.1 338212750 10871832 3850767..3852041 1 NC_015703.1 PFAM: Phage integrase; COGs: COG5545 P-loop ATPase and inactivated derivatives; KEGG: fps:FP0491 hypothetical protein; SPTR: uncharacterized protein; integrase 3852041 10871832 Runsl_3299 Runella slithyformis DSM 19594 integrase YP_004656805.1 3850767 D 761193 CDS YP_004656806.1 338212751 10871833 3852154..3853335 1 NC_015703.1 PFAM: Virulence-associated protein E; InterPro IPR002694; KEGG: pgi:PG0841 mobilizable transposon, excision protein, SPTR: Mobilizable transposon, excision protein; hypothetical protein 3853335 10871833 Runsl_3300 Runella slithyformis DSM 19594 hypothetical protein YP_004656806.1 3852154 D 761193 CDS YP_004656807.1 338212752 10871834 3853685..3854557 1 NC_015703.1 PFAM: CHC2 zinc finger; mobilizable transposon, excision protein 3854557 10871834 Runsl_3301 Runella slithyformis DSM 19594 mobilizable transposon, excision protein YP_004656807.1 3853685 D 761193 CDS YP_004656808.1 338212753 10871835 3854729..3854947 1 NC_015703.1 InterPro IPR000477; KEGG: fjo:Fjoh_2333 hypothetical protein; PFAM: RNA-directed DNA polymerase (reverse transcriptase); SPTR: uncharacterized protein; hypothetical protein 3854947 10871835 Runsl_3302 Runella slithyformis DSM 19594 hypothetical protein YP_004656808.1 3854729 D 761193 CDS YP_004656809.1 338212754 10871836 complement(3854989..3856467) 1 NC_015703.1 PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); RNA-directed DNA polymerase 3856467 10871836 Runsl_3303 Runella slithyformis DSM 19594 RNA-directed DNA polymerase YP_004656809.1 3854989 R 761193 CDS YP_004656810.1 338212755 10871837 3857080..3857193 1 NC_015703.1 hypothetical protein 3857193 10871837 Runsl_3304 Runella slithyformis DSM 19594 hypothetical protein YP_004656810.1 3857080 D 761193 CDS YP_004656811.1 338212756 10871839 3857683..3858843 1 NC_015703.1 PFAM: Acyltransferase; InterPro IPR008207; KEGG: sli:Slin_3142 multi-sensor hybrid histidine kinase; PFAM: Signal transduction histidine kinase, phosphotransfer (Hpt) region; SPTR: Sensory box histidine kinase/response regulator; hypothetical protein 3858843 10871839 Runsl_3305 Runella slithyformis DSM 19594 hypothetical protein YP_004656811.1 3857683 D 761193 CDS YP_004656812.1 338212757 10871840 complement(3858855..3859208) 1 NC_015703.1 PFAM: Hpt domain; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR003593:IPR002078:IPR002197; KEGG: sli:Slin_3143 two component, sigma54 specific, fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; SPTR: Nitrogen regulation protein NR(I); Hpt domain-containing protein 3859208 10871840 Runsl_3306 Runella slithyformis DSM 19594 Hpt domain-containing protein YP_004656812.1 3858855 R 761193 CDS YP_004656813.1 338212758 10871841 complement(3859253..3860608) 1 NC_015703.1 PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: dfe:Dfer_5736 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; Fis family transcriptional regulator 3860608 10871841 Runsl_3307 Runella slithyformis DSM 19594 Fis family transcriptional regulator YP_004656813.1 3859253 R 761193 CDS YP_004656814.1 338212759 10871842 complement(3860868..3861758) 1 NC_015703.1 PFAM: Cupin domain; Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR010496; KEGG: sli:Slin_0438 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; AraC family transcriptional regulator 3861758 10871842 Runsl_3308 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004656814.1 3860868 R 761193 CDS YP_004656815.1 338212760 10871843 3861894..3862625 1 NC_015703.1 PFAM: Domain of Unknown Function (DUF1080); COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: sli:Slin_0047 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; hypothetical protein 3862625 10871843 Runsl_3309 Runella slithyformis DSM 19594 hypothetical protein YP_004656815.1 3861894 D 761193 CDS YP_004656816.1 338212761 10871844 3862622..3864004 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sus:Acid_5864 xylose isomerase domain-containing protein; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; oxidoreductase domain-containing protein 3864004 10871844 Runsl_3310 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004656816.1 3862622 D 761193 CDS YP_004656817.1 338212762 10871845 3864022..3864912 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; manually curated; xylose isomerase domain-containing protein 3864912 10871845 Runsl_3311 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004656817.1 3864022 D 761193 CDS YP_004656818.1 338212763 10871847 3865158..3865946 1 NC_015703.1 PFAM: Phytanoyl-CoA dioxygenase (PhyH); InterPro IPR012307; KEGG: sli:Slin_2651 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; phytanoyl-CoA dioxygenase 3865946 10871847 Runsl_3313 Runella slithyformis DSM 19594 phytanoyl-CoA dioxygenase YP_004656818.1 3865158 D 761193 CDS YP_004656819.1 338212764 10871848 3866038..3866850 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: fjo:Fjoh_4121 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: 3-oxoacyl-[acyl-carrier-protein] reductase; xylose isomerase domain-containing protein 3866850 10871848 Runsl_3314 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004656819.1 3866038 D 761193 CDS YP_004656820.1 338212765 10871849 3867246..3868010 1 NC_015703.1 PFAM: short chain dehydrogenase; Prodigal; manually curated; 3-oxoacyl-ACP reductase 3868010 10871849 Runsl_3315 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004656820.1 3867246 D 761193 CDS YP_004656821.1 338212766 10871851 3868489..3869634 1 NC_015703.1 PFAM: FMN-dependent dehydrogenase; COGs: COG2610 H+/gluconate symporter and related permease; InterPro IPR003474; KEGG: sli:Slin_3386 gluconate transporter; PFAM: Gluconate transporter; SPTR: Gluconate transporter; TIGRFAM: Gluconate transporter; L-lactate dehydrogenase (cytochrome) 3869634 10871851 Runsl_3317 Runella slithyformis DSM 19594 L-lactate dehydrogenase (cytochrome) YP_004656821.1 3868489 D 761193 CDS YP_004656822.1 338212767 10871852 3869655..3870971 1 NC_015703.1 PFAM: GntP family permease; TIGRFAM: gluconate transporter; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: dfe:Dfer_1462 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; gluconate transporter 3870971 10871852 Runsl_3318 Runella slithyformis DSM 19594 gluconate transporter YP_004656822.1 3869655 D 761193 CDS YP_004656823.1 338212768 10871853 3871045..3871632 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: dfe:Dfer_1461 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; ECF subfamily RNA polymerase sigma-24 subunit 3871632 10871853 Runsl_3319 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004656823.1 3871045 D 761193 CDS YP_004656824.1 338212769 10871854 3871732..3872838 1 NC_015703.1 PFAM: FecR protein; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: bfr:BF0666 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: Outer membrane protein; anti-FecI sigma factor FecR 3872838 10871854 Runsl_3320 Runella slithyformis DSM 19594 anti-FecI sigma factor FecR YP_004656824.1 3871732 D 761193 CDS YP_004656825.1 338212770 10871855 3873026..3876451 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: sli:Slin_0095 hypothetical protein; SPTR: Lipoprotein; TonB-dependent receptor plug 3876451 10871855 Runsl_3321 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004656825.1 3873026 D 761193 CDS YP_004656826.1 338212771 10871856 3876481..3877935 1 NC_015703.1 COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR002218:IPR006311; KEGG: plm:Plim_0117 HI0933 family protein; PFAM: Glucose-inhibited division protein A-related; SPTR: HI0933 family protein; hypothetical protein 3877935 10871856 Runsl_3322 Runella slithyformis DSM 19594 hypothetical protein YP_004656826.1 3876481 D 761193 CDS YP_004656827.1 338212772 10871857 3878000..3879433 1 NC_015703.1 PFAM: Thi4 family; InterPro IPR002218; KEGG: plm:Plim_0117 HI0933 family protein; PFAM: Glucose-inhibited division protein A-related; SPTR: uncharacterized protein; glucose-inhibited division protein A 3879433 10871857 Runsl_3323 Runella slithyformis DSM 19594 glucose-inhibited division protein A YP_004656827.1 3878000 D 761193 CDS YP_004656828.1 338212773 10871858 3879463..3880818 1 NC_015703.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; KEGG: sli:Slin_6546 hypothetical protein; SPTR: uncharacterized protein; glucose-inhibited division protein A 3880818 10871858 Runsl_3324 Runella slithyformis DSM 19594 glucose-inhibited division protein A YP_004656828.1 3879463 D 761193 CDS YP_004656829.1 338212774 10871859 3880903..3882192 1 NC_015703.1 SPTR: uncharacterized protein; hypothetical protein 3882192 10871859 Runsl_3325 Runella slithyformis DSM 19594 hypothetical protein YP_004656829.1 3880903 D 761193 CDS YP_004656830.1 338212775 10871860 3882382..3883809 1 NC_015703.1 InterPro IPR011701; KEGG: dfe:Dfer_4712 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; hypothetical protein 3883809 10871860 Runsl_3326 Runella slithyformis DSM 19594 hypothetical protein YP_004656830.1 3882382 D 761193 CDS YP_004656831.1 338212776 10871861 3883945..3885186 1 NC_015703.1 PFAM: Major Facilitator Superfamily; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR003313:IPR000005; KEGG: dfe:Dfer_5736 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; AraC protein, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; major facilitator superfamily protein 3885186 10871861 Runsl_3327 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004656831.1 3883945 D 761193 CDS YP_004656832.1 338212777 10871862 complement(3885248..3886114) 1 NC_015703.1 PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; Prodigal; manually curated; AraC family transcriptional regulator 3886114 10871862 Runsl_3328 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004656832.1 3885248 R 761193 CDS YP_004656833.1 338212778 10871865 3887190..3888149 1 NC_015703.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase; manually curated; transposase IS116/IS110/IS902 family protein 3888149 10871865 Runsl_3331 Runella slithyformis DSM 19594 transposase IS116/IS110/IS902 family protein YP_004656833.1 3887190 D 761193 CDS YP_004656834.1 338212779 10871867 3888614..3888835 1 NC_015703.1 PFAM: Helix-turn-helix; TIGRFAM: transcriptional regulator, y4mF family; InterPro IPR017508; KEGG: cpc:Cpar_0147 HipA N-terminal domain-containing protein; SPTR: HipA N-terminal domain protein; TIGRFAM: HipA, N-terminal; transcriptional regulator 3888835 10871867 Runsl_3333 Runella slithyformis DSM 19594 transcriptional regulator YP_004656834.1 3888614 D 761193 CDS YP_004656835.1 338212780 10871868 3888822..3889154 1 NC_015703.1 TIGRFAM: HipA N-terminal domain; COGs: COG3550 conserved hypothetical protein; InterPro IPR012894:IPR012893; KEGG: cpb:Cphamn1_2166 HipA domain-containing protein; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; SPTR: HipA domain protein; HipA N-terminal domain-containing protein 3889154 10871868 Runsl_3334 Runella slithyformis DSM 19594 HipA N-terminal domain-containing protein YP_004656835.1 3888822 D 761193 CDS YP_004656836.1 338212781 10871869 3889151..3890095 1 NC_015703.1 PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain; manually curated; HipA domain-containing protein 3890095 10871869 Runsl_3335 Runella slithyformis DSM 19594 HipA domain-containing protein YP_004656836.1 3889151 D 761193 CDS YP_004656837.1 338212782 10871871 3890643..3892367 1 NC_015703.1 hypothetical protein 3892367 10871871 Runsl_3337 Runella slithyformis DSM 19594 hypothetical protein YP_004656837.1 3890643 D 761193 CDS YP_004656838.1 338212783 10871872 3892364..3893086 1 NC_015703.1 hypothetical protein 3893086 10871872 Runsl_3338 Runella slithyformis DSM 19594 hypothetical protein YP_004656838.1 3892364 D 761193 CDS YP_004656839.1 338212784 10871873 3893094..3893348 1 NC_015703.1 KEGG: psa:PST_0632 type I restriction-modification system, S subunit; SPTR: Type I restriction-modification system, S subunit; hypothetical protein 3893348 10871873 Runsl_3339 Runella slithyformis DSM 19594 hypothetical protein YP_004656839.1 3893094 D 761193 CDS YP_004656840.1 338212785 10871874 complement(3893450..3893758) 1 NC_015703.1 COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; InterPro IPR001437; KEGG: pol:Bpro_1952 superfamily I DNA/RNA helicase; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic; SPTR: Superfamily I DNA and RNA helicases and helicase subunits-like; type I restriction-modification system subunit S 3893758 10871874 Runsl_3340 Runella slithyformis DSM 19594 type I restriction-modification system subunit S YP_004656840.1 3893450 R 761193 CDS YP_004656841.1 338212786 10871875 complement(3893805..3900041) 1 NC_015703.1 PFAM: Transcription elongation factor, GreA/GreB, C-term; COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; KEGG: fjo:Fjoh_3602 phospholipase D/transphosphatidylase; SPTR: Phospholipase D/Transphosphatidylase; transcription elongation factor GreA/GreB domain-containing protein 3900041 10871875 Runsl_3341 Runella slithyformis DSM 19594 transcription elongation factor GreA/GreB domain-containing protein YP_004656841.1 3893805 R 761193 CDS YP_004656842.1 338212787 10871876 complement(3900362..3901222) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1669); COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: cni:Calni_1850 restriction modification system DNA specificity domain; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Type-1 restriction enzyme EcoDI specificity protein; phospholipase D/transphosphatidylase 3901222 10871876 Runsl_3342 Runella slithyformis DSM 19594 phospholipase D/transphosphatidylase YP_004656842.1 3900362 R 761193 CDS YP_004656843.1 338212788 10871877 complement(3901289..3902668) 1 NC_015703.1 PFAM: Type I restriction modification DNA specificity domain; COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: nth:Nther_1992 N-6 DNA methylase; PFAM: DNA methylase, adenine-specific; SPTR: Type I restriction-modification enzyme, M subunit; restriction modification system DNA specificity domain-containing protein 3902668 10871877 Runsl_3343 Runella slithyformis DSM 19594 restriction modification system DNA specificity domain-containing protein YP_004656843.1 3901289 R 761193 CDS YP_004656844.1 338212789 10871878 complement(3902668..3904128) 1 NC_015703.1 PFAM: N-6 DNA Methylase; HsdM N-terminal domain; COGs: COG4096 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014001:IPR007409:IPR006935:IPR001650; KEGG: gtn:GTNG_0761 type I restriction enzyme EcoKI subunit R; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; DNA/RNA helicase, C-terminal; PRIAM: Type I site-specific deoxyribonuclease; SMART: DEAD-like helicase, N-terminal; SPTR: Type III restriction protein res subunit; N-6 DNA methylase 3904128 10871878 Runsl_3344 Runella slithyformis DSM 19594 N-6 DNA methylase YP_004656844.1 3902668 R 761193 CDS YP_004656845.1 338212790 10871879 complement(3904133..3907372) 1 NC_015703.1 PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Helicase conserved C-terminal domain; Domain of unknown function (DUF3559); Type III restriction enzyme, res subunit; InterPro IPR002104; KEGG: dfe:Dfer_5531 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Integrase; type I site-specific deoxyribonuclease 3907372 10871879 Runsl_3345 Runella slithyformis DSM 19594 type I site-specific deoxyribonuclease YP_004656845.1 3904133 R 761193 CDS YP_004656846.1 338212791 10871880 3908062..3909429 1 NC_015703.1 PFAM: Phage integrase; integrase 3909429 10871880 Runsl_3346 Runella slithyformis DSM 19594 integrase YP_004656846.1 3908062 D 761193 CDS YP_004656847.1 338212792 10871881 3909528..3910418 1 NC_015703.1 hypothetical protein 3910418 10871881 Runsl_3347 Runella slithyformis DSM 19594 hypothetical protein YP_004656847.1 3909528 D 761193 CDS YP_004656848.1 338212793 10871882 3910568..3910846 1 NC_015703.1 InterPro IPR014883; KEGG: fps:FP0626 hypothetical protein; PFAM: VRR-NUC; SPTR: uncharacterized protein; hypothetical protein 3910846 10871882 Runsl_3348 Runella slithyformis DSM 19594 hypothetical protein YP_004656848.1 3910568 D 761193 CDS YP_004656849.1 338212794 10871883 3910833..3911258 1 NC_015703.1 PFAM: VRR-NUC domain; VRR-NUC domain-containing protein 3911258 10871883 Runsl_3349 Runella slithyformis DSM 19594 VRR-NUC domain-containing protein YP_004656849.1 3910833 D 761193 CDS YP_004656850.1 338212795 10871884 3911331..3911579 1 NC_015703.1 KEGG: fps:FP0625 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3911579 10871884 Runsl_3350 Runella slithyformis DSM 19594 hypothetical protein YP_004656850.1 3911331 D 761193 CDS YP_004656851.1 338212796 10871885 3911582..3912277 1 NC_015703.1 KEGG: sli:Slin_3285 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3912277 10871885 Runsl_3351 Runella slithyformis DSM 19594 hypothetical protein YP_004656851.1 3911582 D 761193 CDS YP_004656852.1 338212797 10871886 3912471..3912758 1 NC_015703.1 hypothetical protein 3912758 10871886 Runsl_3352 Runella slithyformis DSM 19594 hypothetical protein YP_004656852.1 3912471 D 761193 CDS YP_004656853.1 338212798 10871887 3912755..3913000 1 NC_015703.1 hypothetical protein 3913000 10871887 Runsl_3353 Runella slithyformis DSM 19594 hypothetical protein YP_004656853.1 3912755 D 761193 CDS YP_004656854.1 338212799 10871888 3912993..3913190 1 NC_015703.1 hypothetical protein 3913190 10871888 Runsl_3354 Runella slithyformis DSM 19594 hypothetical protein YP_004656854.1 3912993 D 761193 CDS YP_004656855.1 338212800 10871889 3913174..3913428 1 NC_015703.1 InterPro IPR006448; SPTR: uncharacterized protein; TIGRFAM: Phage terminase, small subunit, , P27; hypothetical protein 3913428 10871889 Runsl_3355 Runella slithyformis DSM 19594 hypothetical protein YP_004656855.1 3913174 D 761193 CDS YP_004656856.1 338212801 10871890 3913535..3913996 1 NC_015703.1 PFAM: Phage terminase, small subunit; TIGRFAM: phage terminase, small subunit, , P27 family; phage terminase small subunit 3913996 10871890 Runsl_3356 Runella slithyformis DSM 19594 phage terminase small subunit YP_004656856.1 3913535 D 761193 CDS YP_004656857.1 338212802 10871892 complement(3914283..3914663) 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: ModE molybdate transport repressor domain; ModE family transcriptional regulator 3914663 10871892 Runsl_3357 Runella slithyformis DSM 19594 ModE family transcriptional regulator YP_004656857.1 3914283 R 761193 CDS YP_004656858.1 338212803 10871894 3915128..3915490 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 3915490 10871894 Runsl_3358 Runella slithyformis DSM 19594 hypothetical protein YP_004656858.1 3915128 D 761193 CDS YP_004656859.1 338212804 10871896 3916660..3916884 1 NC_015703.1 hypothetical protein 3916884 10871896 Runsl_3360 Runella slithyformis DSM 19594 hypothetical protein YP_004656859.1 3916660 D 761193 CDS YP_004656860.1 338212805 10871897 3916881..3917075 1 NC_015703.1 KEGG: ttr:Tter_2666 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3917075 10871897 Runsl_3361 Runella slithyformis DSM 19594 hypothetical protein YP_004656860.1 3916881 D 761193 CDS YP_004656861.1 338212806 10871898 3917251..3918816 1 NC_015703.1 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dfe:Dfer_4877 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein 3918816 10871898 Runsl_3362 Runella slithyformis DSM 19594 hypothetical protein YP_004656861.1 3917251 D 761193 CDS YP_004656862.1 338212807 10871899 3918820..3920028 1 NC_015703.1 PFAM: Predicted permease; COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; KEGG: swd:Swoo_0898 coenzyme PQQ synthesis protein B; SPTR: Coenzyme PQQ synthesis protein B; hypothetical protein 3920028 10871899 Runsl_3363 Runella slithyformis DSM 19594 hypothetical protein YP_004656862.1 3918820 D 761193 CDS YP_004656863.1 338212808 10871900 complement(3920029..3920940) 1 NC_015703.1 PFAM: Metallo-beta-lactamase superfamily; TIGRFAM: coenzyme PQQ biosynthesis protein B; Prodigal; manually curated; coenzyme PQQ synthesis protein B 3920940 10871900 Runsl_3364 Runella slithyformis DSM 19594 coenzyme PQQ synthesis protein B YP_004656863.1 3920029 R 761193 CDS YP_004656864.1 338212809 10871902 3921801..3923909 1 NC_015703.1 PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; NAD-dependent DNA ligase C4 zinc finger domain; BRCA1 C Terminus (BRCT) domain; TIGRFAM: DNA ligase, NAD-dependent; DNA ligase 3923909 10871902 Runsl_3366 Runella slithyformis DSM 19594 DNA ligase YP_004656864.1 3921801 D 761193 CDS YP_004656865.1 338212810 10871903 3923975..3924190 1 NC_015703.1 COGs: COG5378 nucleotide-binding protein; InterPro IPR019298; KEGG: dfe:Dfer_4982 hypothetical protein; PFAM: Nucleotide-binding protein, PIN domain; SPTR: Predicted nucleic acid-binding protein, containing PIN domain; hypothetical protein 3924190 10871903 Runsl_3367 Runella slithyformis DSM 19594 hypothetical protein YP_004656865.1 3923975 D 761193 CDS YP_004656866.1 338212811 10871904 3924183..3924596 1 NC_015703.1 PFAM: Predicted nucleotide-binding protein, containing PIN domain; COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; InterPro IPR000836; KEGG: dfe:Dfer_2676 phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; PRIAM: Uracil phosphoribosyltransferase; SPTR: Phosphoribosyltransferase; Nucleotide-binding protein, PIN domain-containing protein 3924596 10871904 Runsl_3368 Runella slithyformis DSM 19594 Nucleotide-binding protein, PIN domain-containing protein YP_004656866.1 3924183 D 761193 CDS YP_004656867.1 338212812 10871905 3924616..3925149 1 NC_015703.1 PFAM: Phosphoribosyl transferase domain; InterPro IPR004518; KEGG: ppn:Palpr_2194 MazG nucleotide pyrophosphohydrolase; PFAM: NTP pyrophosphohydrolase MazG, catalytic core; SPTR: MazG nucleotide pyrophosphohydrolase; uracil phosphoribosyltransferase 3925149 10871905 Runsl_3369 Runella slithyformis DSM 19594 uracil phosphoribosyltransferase YP_004656867.1 3924616 D 761193 CDS YP_004656868.1 338212813 10871906 3925292..3925645 1 NC_015703.1 PFAM: MazG nucleotide pyrophosphohydrolase domain; nucleotide pyrophosphohydrolase 3925645 10871906 Runsl_3370 Runella slithyformis DSM 19594 nucleotide pyrophosphohydrolase YP_004656868.1 3925292 D 761193 CDS YP_004656869.1 338212814 10871907 complement(3925728..3926546) 1 NC_015703.1 COGs: COG2816 NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding; InterPro IPR000086; KEGG: hch:HCH_01478 ADP-ribose pyrophosphatase; PFAM: NUDIX hydrolase domain; SPTR: ADP-ribose pyrophosphatase; hypothetical protein 3926546 10871907 Runsl_3371 Runella slithyformis DSM 19594 hypothetical protein YP_004656869.1 3925728 R 761193 CDS YP_004656870.1 338212815 10871908 3926771..3927271 1 NC_015703.1 PFAM: NUDIX domain; InterPro IPR008454:IPR001434; KEGG: sli:Slin_0184 hypothetical protein; PFAM: Protein of unknown function DUF11; Collagen-binding surface protein Cna-like, B region; SPTR: uncharacterized protein; TIGRFAM: Protein of unknown function DUF11; NUDIX hydrolase 3927271 10871908 Runsl_3372 Runella slithyformis DSM 19594 NUDIX hydrolase YP_004656870.1 3926771 D 761193 CDS YP_004656871.1 338212816 10871909 complement(3927345..3933035) 1 NC_015703.1 PFAM: Cna protein B-type domain; TIGRFAM: conserved repeat domain; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: sli:Slin_0190 histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: Histidine kinase; hypothetical protein 3933035 10871909 Runsl_3373 Runella slithyformis DSM 19594 hypothetical protein YP_004656871.1 3927345 R 761193 CDS YP_004656872.1 338212817 10871910 complement(3933534..3935399) 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Protein of unknown function (DUF2681); COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_0191 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; histidine kinase 3935399 10871910 Runsl_3374 Runella slithyformis DSM 19594 histidine kinase YP_004656872.1 3933534 R 761193 CDS YP_004656873.1 338212818 10871911 complement(3935465..3936160) 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; LytTR family two component transcriptional regulator 3936160 10871911 Runsl_3375 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004656873.1 3935465 R 761193 CDS YP_004656874.1 338212819 10871912 complement(3936541..3936717) 1 NC_015703.1 COGs: COG1983 stress-responsive transcriptional regulator protein; InterPro IPR007168; KEGG: dfe:Dfer_4257 phage shock protein C, PspC; PFAM: PspC; SPTR: Phage shock protein C, PspC; hypothetical protein 3936717 10871912 Runsl_3376 Runella slithyformis DSM 19594 hypothetical protein YP_004656874.1 3936541 R 761193 CDS YP_004656875.1 338212820 10871913 complement(3936857..3939406) 1 NC_015703.1 PFAM: PspC domain; Protein of unknown function (DUF2807); COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: dfe:Dfer_4256 transcriptional regulator, PadR-like family; PFAM: Transcriptional regulator PadR N-terminal-like; SPTR: Transcriptional regulator, PadR-like family; phage shock protein PspC 3939406 10871913 Runsl_3377 Runella slithyformis DSM 19594 phage shock protein PspC YP_004656875.1 3936857 R 761193 CDS YP_004656876.1 338212821 10871914 complement(3939452..3939862) 1 NC_015703.1 PFAM: Transcriptional regulator PadR-like family; COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: sli:Slin_2433 multiple antibiotic resistance (MarC)-related protein; PFAM: Multiple antibiotic resistance (MarC)-related; SPTR: Multiple antibiotic resistance (MarC)-related protein; PadR-like family transcriptional regulator 3939862 10871914 Runsl_3378 Runella slithyformis DSM 19594 PadR-like family transcriptional regulator YP_004656876.1 3939452 R 761193 CDS YP_004656877.1 338212822 10871915 3940083..3940775 1 NC_015703.1 PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family; COGs: COG0730 permease; InterPro IPR002781; KEGG: ppn:Palpr_0078 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: uncharacterized protein; multiple antibiotic resistance (MarC)-like protein 3940775 10871915 Runsl_3379 Runella slithyformis DSM 19594 multiple antibiotic resistance (MarC)-like protein YP_004656877.1 3940083 D 761193 CDS YP_004656878.1 338212823 10871916 3940878..3941732 1 NC_015703.1 PFAM: Sulfite exporter TauE/SafE; COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: dfe:Dfer_2399 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; hypothetical protein 3941732 10871916 Runsl_3380 Runella slithyformis DSM 19594 hypothetical protein YP_004656878.1 3940878 D 761193 CDS YP_004656879.1 338212824 10871917 3941918..3942613 1 NC_015703.1 PFAM: NUDIX domain; COGs: COG1069 Ribulose kinase; InterPro IPR018484:IPR018485:IPR005929; KEGG: sli:Slin_1239 L-ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; PRIAM: Ribulokinase; SPTR: Ribulokinase; TIGRFAM: L-ribulokinase; NUDIX hydrolase 3942613 10871917 Runsl_3381 Runella slithyformis DSM 19594 NUDIX hydrolase YP_004656879.1 3941918 D 761193 CDS YP_004656880.1 338212825 10871918 3942622..3944262 1 NC_015703.1 PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: L-ribulokinase; COGs: COG2160 L-arabinose isomerase; HAMAP: L-arabinose isomerase; InterPro IPR003762; KEGG: lby:Lbys_2508 L-arabinose isomerase; PFAM: L-arabinose isomerase; PRIAM: L-arabinose isomerase; SPTR: L-arabinose isomerase; L-ribulokinase 3944262 10871918 Runsl_3382 Runella slithyformis DSM 19594 L-ribulokinase YP_004656880.1 3942622 D 761193 CDS YP_004656881.1 338212826 10871919 3944397..3945881 1 NC_015703.1 PFAM: L-arabinose isomerase; L-arabinose isomerase C-terminal domain; COGs: COG3534 Alpha-L-arabinofuranosidase; InterPro IPR010720; KEGG: sli:Slin_1237 alpha-L-arabinofuranosidase domain protein; PFAM: Alpha-L-arabinofuranosidase, C-terminal; SMART: Alpha-L-arabinofuranosidase, C-terminal; SPTR: Alpha-L-arabinofuranosidase domain protein; L-arabinose isomerase 3945881 10871919 Runsl_3383 Runella slithyformis DSM 19594 L-arabinose isomerase YP_004656881.1 3944397 D 761193 CDS YP_004656882.1 338212827 10871920 3945924..3947471 1 NC_015703.1 PFAM: Alpha-L-arabinofuranosidase C-terminus; COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: lby:Lbys_2507 L-ribulose 5-phosphate 4-epimerase; PFAM: Class II aldolase/adducin, N-terminal; PRIAM: L-ribulose-5-phosphate 4-epimerase; SPTR: L-ribulose 5-phosphate 4-epimerase; alpha-L-arabinofuranosidase 3947471 10871920 Runsl_3384 Runella slithyformis DSM 19594 alpha-L-arabinofuranosidase YP_004656882.1 3945924 D 761193 CDS YP_004656883.1 338212828 10871921 3947543..3948268 1 NC_015703.1 PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase; COGs: COG4146 symporter; InterPro IPR001734:IPR019900; KEGG: lby:Lbys_2506 sss sodium solute transporter superfamily; PFAM: Sodium/solute symporter; SPTR: SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup; L-ribulose-5-phosphate 4-epimerase 3948268 10871921 Runsl_3385 Runella slithyformis DSM 19594 L-ribulose-5-phosphate 4-epimerase YP_004656883.1 3947543 D 761193 CDS YP_004656884.1 338212829 10871922 3948397..3950052 1 NC_015703.1 PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; KEGG: sli:Slin_4315 hypothetical protein; SPTR: uncharacterized protein; sodium solute transporter superfamily protein 3950052 10871922 Runsl_3386 Runella slithyformis DSM 19594 sodium solute transporter superfamily protein YP_004656884.1 3948397 D 761193 CDS YP_004656885.1 338212830 10871923 complement(3950433..3950699) 1 NC_015703.1 COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; InterPro IPR001804:IPR014273; KEGG: sli:Slin_4313 isocitrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; SPTR: Isocitrate dehydrogenase; TIGRFAM: Isocitrate dehydrogenase bacteria; hypothetical protein 3950699 10871923 Runsl_3387 Runella slithyformis DSM 19594 hypothetical protein YP_004656885.1 3950433 R 761193 CDS YP_004656886.1 338212831 10871924 complement(3950711..3952183) 1 NC_015703.1 PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119; KEGG: sli:Slin_4312 LysR family transcriptional regulator; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; SPTR: Transcriptional regulator, LysR family; isocitrate dehydrogenase 3952183 10871924 Runsl_3388 Runella slithyformis DSM 19594 isocitrate dehydrogenase YP_004656886.1 3950711 R 761193 CDS YP_004656887.1 338212832 10871925 3952236..3953153 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; COGs: COG2326 conserved hypothetical protein; InterPro IPR005660; KEGG: dfe:Dfer_4378 polyphosphate:AMP phosphotransferase; PFAM: Polyphosphate kinase 2; SPTR: Polyphosphate:AMP phosphotransferase; TIGRFAM: polyphosphate:nucleotide phosphotransferase, PPK2 family; LysR family transcriptional regulator 3953153 10871925 Runsl_3389 Runella slithyformis DSM 19594 LysR family transcriptional regulator YP_004656887.1 3952236 D 761193 CDS YP_004656888.1 338212833 10871926 complement(3953222..3954124) 1 NC_015703.1 PFAM: Polyphosphate kinase 2 (PPK2); TIGRFAM: polyphosphate:nucleotide phosphotransferase, PPK2 family; COGs: COG0642 Signal transduction histidine kinase; InterProIPR003018:IPR003661:IPR003594:IPR001789:IPR 007891; KEGG: cpi:Cpin_2257 GAF sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; CHASE3; GAF; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; Signal transduction response regulator, receiver region; SPTR: GAF sensor hybrid histidine kinase; polyphosphate:nucleotide phosphotransferase 3954124 10871926 Runsl_3390 Runella slithyformis DSM 19594 polyphosphate:nucleotide phosphotransferase YP_004656888.1 3953222 R 761193 CDS YP_004656889.1 338212834 10871927 3954404..3957889 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; CHASE3 domain; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterPro IPR000780; KEGG: sli:Slin_1030 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase, CheR-type; PRIAM: Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase, CheR-type; SPTR: MCP methyltransferase, CheR-type; multi-sensor hybrid histidine kinase 3957889 10871927 Runsl_3391 Runella slithyformis DSM 19594 multi-sensor hybrid histidine kinase YP_004656889.1 3954404 D 761193 CDS YP_004656890.1 338212835 10871928 3957895..3958731 1 NC_015703.1 PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain; COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; InterPro IPR000673; KEGG: cpi:Cpin_2259 CheB methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; SPTR: CheB methylesterase; chemotaxis protein CheR 3958731 10871928 Runsl_3392 Runella slithyformis DSM 19594 chemotaxis protein CheR YP_004656890.1 3957895 D 761193 CDS YP_004656891.1 338212836 10871929 3958728..3959303 1 NC_015703.1 PFAM: CheB methylesterase; COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR001789:IPR003661:IPR003594; KEGG: sli:Slin_1029 response regulator receiver sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SPTR: Response regulator receiver sensor signal transduction histidine kinase; chemotaxis protein CheB 3959303 10871929 Runsl_3393 Runella slithyformis DSM 19594 chemotaxis protein CheB YP_004656891.1 3958728 D 761193 CDS YP_004656892.1 338212837 10871930 3959319..3960422 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; response regulator receiver sensor signal transduction histidine kinase 3960422 10871930 Runsl_3394 Runella slithyformis DSM 19594 response regulator receiver sensor signal transduction histidine kinase YP_004656892.1 3959319 D 761193 CDS YP_004656893.1 338212838 10871931 complement(3960701..3960820) 1 NC_015703.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: sli:Slin_1028 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; hypothetical protein 3960820 10871931 Runsl_3395 Runella slithyformis DSM 19594 hypothetical protein YP_004656893.1 3960701 R 761193 CDS YP_004656894.1 338212839 10871932 3961237..3961617 1 NC_015703.1 PFAM: Response regulator receiver domain; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: sli:Slin_3851 sugar transferase; PFAM: Bacterial sugar transferase; SPTR: Sugar transferase; response regulator receiver protein 3961617 10871932 Runsl_3396 Runella slithyformis DSM 19594 response regulator receiver protein YP_004656894.1 3961237 D 761193 CDS YP_004656895.1 338212840 10871933 3961688..3962848 1 NC_015703.1 PFAM: Bacterial sugar transferase; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: cpi:Cpin_3709 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase, family 2; sugar transferase 3962848 10871933 Runsl_3397 Runella slithyformis DSM 19594 sugar transferase YP_004656895.1 3961688 D 761193 CDS YP_004656896.1 338212841 10871934 3962845..3963789 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_3862 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; family 2 glycosyl transferase 3963789 10871934 Runsl_3398 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004656896.1 3962845 D 761193 CDS YP_004656897.1 338212842 10871935 3963802..3965007 1 NC_015703.1 PFAM: Glycosyl transferase 2; KEGG: sli:Slin_3860 O-antigen polymerase; SPTR: O-antigen polymerase; family 2 glycosyl transferase 3965007 10871935 Runsl_3399 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004656897.1 3963802 D 761193 CDS YP_004656898.1 338212843 10871936 3965038..3966504 1 NC_015703.1 InterPro IPR003406; KEGG: dfe:Dfer_0169 glycosyl transferase 14; PFAM: Glycosyl transferase, family 14; SPTR: Glycosyl transferase 14; O-antigen polymerase 3966504 10871936 Runsl_3400 Runella slithyformis DSM 19594 O-antigen polymerase YP_004656898.1 3965038 D 761193 CDS YP_004656899.1 338212844 10871937 3966744..3967580 1 NC_015703.1 PFAM: Core-2/I-Branching enzyme; COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: sli:Slin_3855 acetyltransferase (isoleucine patch superfamily)-like protein; SPTR: Acetyltransferase (Isoleucine patch superfamily)-like protein; glycosyl transferase family protein 3967580 10871937 Runsl_3401 Runella slithyformis DSM 19594 glycosyl transferase family protein YP_004656899.1 3966744 D 761193 CDS YP_004656900.1 338212845 10871938 complement(3967581..3968216) 1 NC_015703.1 PFAM: Bacterial transferase hexapeptide (three repeats); InterPro IPR001296; KEGG: dfe:Dfer_0170 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; acetyltransferase (isoleucine patch superfamily)-like protein 3968216 10871938 Runsl_3402 Runella slithyformis DSM 19594 acetyltransferase (isoleucine patch superfamily)-like protein YP_004656900.1 3967581 R 761193 CDS YP_004656901.1 338212846 10871939 complement(3968213..3969439) 1 NC_015703.1 PFAM: Glycosyl transferases group 1; group 1 glycosyl transferase 3969439 10871939 Runsl_3403 Runella slithyformis DSM 19594 group 1 glycosyl transferase YP_004656901.1 3968213 R 761193 CDS YP_004656902.1 338212847 10871940 complement(3969645..3969851) 1 NC_015703.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_3857 hypothetical protein; PFAM: Outer membrane efflux protein; SPTR: uncharacterized protein; hypothetical protein 3969851 10871940 Runsl_3404 Runella slithyformis DSM 19594 hypothetical protein YP_004656902.1 3969645 R 761193 CDS YP_004656903.1 338212848 10871941 3969903..3970721 1 NC_015703.1 PFAM: Outer membrane efflux protein; COGs: COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; KEGG: sli:Slin_3858 lipopolysaccharide biosynthesis protein; SPTR: Lipopolysaccharide biosynthesis protein; outer membrane efflux protein 3970721 10871941 Runsl_3405 Runella slithyformis DSM 19594 outer membrane efflux protein YP_004656903.1 3969903 D 761193 CDS YP_004656904.1 338212849 10871942 3970731..3972938 1 NC_015703.1 PFAM: Chain length determinant protein; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: phe:Phep_1968 polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein; lipopolysaccharide biosynthesis protein 3972938 10871942 Runsl_3406 Runella slithyformis DSM 19594 lipopolysaccharide biosynthesis protein YP_004656904.1 3970731 D 761193 CDS YP_004656905.1 338212850 10871943 3972965..3974401 1 NC_015703.1 PFAM: Polysaccharide biosynthesis protein; COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: dfe:Dfer_0180 acyltransferase 3; PFAM: Acyltransferase 3; SPTR: Acyltransferase 3; polysaccharide biosynthesis protein 3974401 10871943 Runsl_3407 Runella slithyformis DSM 19594 polysaccharide biosynthesis protein YP_004656905.1 3972965 D 761193 CDS YP_004656906.1 338212851 10871944 3974410..3975510 1 NC_015703.1 PFAM: Acyltransferase; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_0174 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; acyltransferase 3975510 10871944 Runsl_3408 Runella slithyformis DSM 19594 acyltransferase YP_004656906.1 3974410 D 761193 CDS YP_004656907.1 338212852 10871945 3975567..3976472 1 NC_015703.1 PFAM: Glycosyl transferase 2; KEGG: phe:Phep_3205 hypothetical protein; SPTR: uncharacterized protein; family 2 glycosyl transferase 3976472 10871945 Runsl_3409 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004656907.1 3975567 D 761193 CDS YP_004656908.1 338212853 10871946 3976568..3977494 1 NC_015703.1 InterPro IPR001173; KEGG: dfe:Dfer_0173 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; hypothetical protein 3977494 10871946 Runsl_3410 Runella slithyformis DSM 19594 hypothetical protein YP_004656908.1 3976568 D 761193 CDS YP_004656909.1 338212854 10871947 3977533..3978324 1 NC_015703.1 PFAM: Glycosyl transferase 2; InterPro IPR001173; KEGG: dfe:Dfer_0173 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; family 2 glycosyl transferase 3978324 10871947 Runsl_3411 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004656909.1 3977533 D 761193 CDS YP_004656910.1 338212855 10871948 3978457..3979242 1 NC_015703.1 PFAM: Glycosyl transferase 2; InterPro IPR005084:IPR006584; KEGG: dfe:Dfer_4512 carbohydrate binding family 6; PFAM: Carbohydrate binding domain, family 6; SMART: Cellulose binding, type IV; SPTR: Carbohydrate binding family 6; family 2 glycosyl transferase 3979242 10871948 Runsl_3412 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004656910.1 3978457 D 761193 CDS YP_004656911.1 338212856 10871949 complement(3979354..3983154) 1 NC_015703.1 PFAM: Carbohydrate binding module (family 6); Beta-galactosidase; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_3861 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; carbohydrate binding family protein 3983154 10871949 Runsl_3413 Runella slithyformis DSM 19594 carbohydrate binding family protein YP_004656911.1 3979354 R 761193 CDS YP_004656912.1 338212857 10871950 3983430..3984620 1 NC_015703.1 PFAM: Glycosyl transferase 2; SPTR: uncharacterized protein; family 2 glycosyl transferase 3984620 10871950 Runsl_3414 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004656912.1 3983430 D 761193 CDS YP_004656913.1 338212858 10871951 3984779..3985150 1 NC_015703.1 PFAM: Protein of unknown function (DUF2874); COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_6754 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; hypothetical protein 3985150 10871951 Runsl_3415 Runella slithyformis DSM 19594 hypothetical protein YP_004656913.1 3984779 D 761193 CDS YP_004656914.1 338212859 10871952 3985378..3986658 1 NC_015703.1 PFAM: Outer membrane efflux protein; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sli:Slin_0918 efflux transporter RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; outer membrane efflux protein 3986658 10871952 Runsl_3416 Runella slithyformis DSM 19594 outer membrane efflux protein YP_004656914.1 3985378 D 761193 CDS YP_004656915.1 338212860 10871953 3986713..3987816 1 NC_015703.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG3696 silver efflux pump; InterPro IPR001036:IPR004763; KEGG: sli:Slin_0917 heavy metal efflux pump, CzcA family; PFAM: Acriflavin resistance protein; SPTR: Heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; RND family efflux transporter MFP subunit 3987816 10871953 Runsl_3417 Runella slithyformis DSM 19594 RND family efflux transporter MFP subunit YP_004656915.1 3986713 D 761193 CDS YP_004656916.1 338212861 10871954 3987901..3991017 1 NC_015703.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); InterPro IPR000620; KEGG: sfu:Sfum_0926 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: uncharacterized protein; CzcA family heavy metal efflux pump 3991017 10871954 Runsl_3418 Runella slithyformis DSM 19594 CzcA family heavy metal efflux pump YP_004656916.1 3987901 D 761193 CDS YP_004656917.1 338212862 10871955 3991146..3992021 1 NC_015703.1 PFAM: EamA-like transporter family; KEGG: sli:Slin_0249 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3992021 10871955 Runsl_3419 Runella slithyformis DSM 19594 hypothetical protein YP_004656917.1 3991146 D 761193 CDS YP_004656918.1 338212863 10871956 3992130..3992645 1 NC_015703.1 KEGG: chu:CHU_0798 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 3992645 10871956 Runsl_3420 Runella slithyformis DSM 19594 hypothetical protein YP_004656918.1 3992130 D 761193 CDS YP_004656919.1 338212864 10871957 3992712..3993059 1 NC_015703.1 COGs: COG3306 Glycosyltransferase involved in LPS biosynthesis; InterPro IPR002654; KEGG: afw:Anae109_0378 glycosyl transferase; PFAM: Glycosyl transferase, family 25; SPTR: Glycosyl transferase 25; hypothetical protein 3993059 10871957 Runsl_3421 Runella slithyformis DSM 19594 hypothetical protein YP_004656919.1 3992712 D 761193 CDS YP_004656920.1 338212865 10871958 3993142..3993936 1 NC_015703.1 PFAM: Glycosyltransferase 25 (LPS biosynthesis protein); COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: dfe:Dfer_4450 peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; SPTR: Peptidase M1 membrane alanine aminopeptidase; glycosyl transferase family protein 3993936 10871958 Runsl_3422 Runella slithyformis DSM 19594 glycosyl transferase family protein YP_004656920.1 3993142 D 761193 CDS YP_004656921.1 338212866 10871959 complement(3993994..3995634) 1 NC_015703.1 PFAM: Peptidase M1; COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011712:IPR003594; KEGG: sli:Slin_6439 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; SMART: ATP-binding region, ATPase-like; SPTR: Histidine kinase; peptidase M1 membrane alanine aminopeptidase 3995634 10871959 Runsl_3423 Runella slithyformis DSM 19594 peptidase M1 membrane alanine aminopeptidase YP_004656921.1 3993994 R 761193 CDS YP_004656922.1 338212867 10871960 3996100..3998004 1 NC_015703.1 PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; KEGG: cyh:Cyan8802_3419 hypothetical protein; SPTR: uncharacterized protein; signal transduction histidine kinase 3998004 10871960 Runsl_3424 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004656922.1 3996100 D 761193 CDS YP_004656923.1 338212868 10871961 complement(3997943..3999685) 1 NC_015703.1 InterPro IPR002575; PFAM: Aminoglycoside phosphotransferase; hypothetical protein 3999685 10871961 Runsl_3425 Runella slithyformis DSM 19594 hypothetical protein YP_004656923.1 3997943 R 761193 CDS YP_004656924.1 338212869 10871962 complement(3999690..4000706) 1 NC_015703.1 PFAM: Phosphotransferase enzyme family; aminoglycoside phosphotransferase 4000706 10871962 Runsl_3426 Runella slithyformis DSM 19594 aminoglycoside phosphotransferase YP_004656924.1 3999690 R 761193 CDS YP_004656925.1 338212870 10871963 complement(4000703..4001215) 1 NC_015703.1 COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); HAMAP: Protein translocase subunit secA; InterProIPR011115:IPR011130:IPR001650:IPR011116:IPR 000185; KEGG: dfe:Dfer_3555 preprotein translocase subunit SecA; PFAM: SecA DEAD-like; SecA preprotein cross-linking region; DNA/RNA helicase, C-terminal; SecA Wing/Scaffold; SPTR: Protein translocase subunit secA; TIGRFAM: SecA protein; hypothetical protein 4001215 10871963 Runsl_3427 Runella slithyformis DSM 19594 hypothetical protein YP_004656925.1 4000703 R 761193 CDS YP_004656926.1 338212871 10871964 complement(4001529..4004885) 1 NC_015703.1 PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit; InterPro IPR010496; KEGG: sli:Slin_3047 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; protein translocase subunit secA 4004885 10871964 Runsl_3428 Runella slithyformis DSM 19594 protein translocase subunit secA YP_004656926.1 4001529 R 761193 CDS YP_004656927.1 338212872 10871965 4005426..4006151 1 NC_015703.1 PFAM: Domain of Unknown Function (DUF1080); KEGG: dfe:Dfer_2858 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4006151 10871965 Runsl_3429 Runella slithyformis DSM 19594 hypothetical protein YP_004656927.1 4005426 D 761193 CDS YP_004656928.1 338212873 10871966 complement(4006138..4006689) 1 NC_015703.1 PFAM: Protein of unknown function (DUF2911); COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: sli:Slin_6133 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28; hypothetical protein 4006689 10871966 Runsl_3430 Runella slithyformis DSM 19594 hypothetical protein YP_004656928.1 4006138 R 761193 CDS YP_004656929.1 338212874 10871967 complement(4006814..4008169) 1 NC_015703.1 PFAM: Peptidase M28; KEGG: sli:Slin_6634 nb031; nematoblast specific protein; SPTR: Nb031; nematoblast specific protein; peptidase M28 4008169 10871967 Runsl_3431 Runella slithyformis DSM 19594 peptidase M28 YP_004656929.1 4006814 R 761193 CDS YP_004656930.1 338212875 10871968 complement(4008554..4009873) 1 NC_015703.1 PFAM: Domain of unknown function (DUF3472); COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; InterPro IPR001041:IPR002888; KEGG: bra:BRADO5691 xanthine dehydrogenase YagT-like, iron-sulfur binding subunit; PFAM: [2Fe-2S]-binding; Ferredoxin; PRIAM: Carbon-monoxide dehydrogenase (acceptor); SPTR: xanthine dehydrogenase YagT-like, iron-sulfur binding subunit; nb031; nematoblast specific protein 4009873 10871968 Runsl_3432 Runella slithyformis DSM 19594 nb031; nematoblast specific protein YP_004656930.1 4008554 R 761193 CDS YP_004656931.1 338212876 10871969 4010080..4010616 1 NC_015703.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain; COGs: COG1319 Aerobic-type carbon monoxide dehydrogenase middle subunit CoxM/CutM homologs; InterPro IPR002346:IPR005107; KEGG: sli:Slin_2370 molybdopterin dehydrogenase FAD-binding protein; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal; PRIAM: Xanthine dehydrogenase; SPTR: Molybdopterin dehydrogenase FAD-binding protein; carbon monoxide dehydrogenase 4010616 10871969 Runsl_3433 Runella slithyformis DSM 19594 carbon monoxide dehydrogenase YP_004656931.1 4010080 D 761193 CDS YP_004656932.1 338212877 10871970 4010613..4011638 1 NC_015703.1 PFAM: FAD binding domain in molybdopterin dehydrogenase; CO dehydrogenase flavoprotein C-terminal domain; COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR000674:IPR008274; KEGG: sli:Slin_2369 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead; PRIAM: Xanthine dehydrogenase; SPTR: Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; xanthine dehydrogenase 4011638 10871970 Runsl_3434 Runella slithyformis DSM 19594 xanthine dehydrogenase YP_004656932.1 4010613 D 761193 CDS YP_004656933.1 338212878 10871971 4011648..4013927 1 NC_015703.1 PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; COGs: COG0177 EndoIII-related endonuclease; InterPro IPR003265:IPR003651; KEGG: sli:Slin_4204 DNA-(apurinic or apyrimidinic site) lyase; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD domain; SPTR: DNA-(Apurinic or apyrimidinic site) lyase; xanthine dehydrogenase 4013927 10871971 Runsl_3435 Runella slithyformis DSM 19594 xanthine dehydrogenase YP_004656933.1 4011648 D 761193 CDS YP_004656934.1 338212879 10871972 4013911..4014573 1 NC_015703.1 PFAM: HhH-GPD superfamily base excision DNA repair protein; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dfe:Dfer_0565 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; DNA-(apurinic or apyrimidinic site) lyase 4014573 10871972 Runsl_3436 Runella slithyformis DSM 19594 DNA-(apurinic or apyrimidinic site) lyase YP_004656934.1 4013911 D 761193 CDS YP_004656935.1 338212880 10871973 4014595..4015389 1 NC_015703.1 PFAM: alpha/beta hydrolase fold; COGs: COG0492 Thioredoxin reductase; HAMAP: Ferredoxin--NADP reductase; InterPro IPR013027; KEGG: sli:Slin_3270 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Ferredoxin--NADP(+) reductase; SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; alpha/beta hydrolase 4015389 10871973 Runsl_3437 Runella slithyformis DSM 19594 alpha/beta hydrolase YP_004656935.1 4014595 D 761193 CDS YP_004656936.1 338212881 10871974 4015603..4016607 1 NC_015703.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG0633 Ferredoxin; InterPro IPR001041; KEGG: sli:Slin_3269 ferredoxin; PFAM: Ferredoxin; SPTR: Ferredoxin; ferredoxin-NADP reductase 4016607 10871974 Runsl_3438 Runella slithyformis DSM 19594 ferredoxin-NADP reductase YP_004656936.1 4015603 D 761193 CDS YP_004656937.1 338212882 10871975 4016588..4016950 1 NC_015703.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; InterPro IPR006175; KEGG: chu:CHU_2496 endoribonuclease; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease, inhibits protein synthesis; ferredoxin 4016950 10871975 Runsl_3439 Runella slithyformis DSM 19594 ferredoxin YP_004656937.1 4016588 D 761193 CDS YP_004656938.1 338212883 10871976 complement(4017035..4017421) 1 NC_015703.1 PFAM: Endoribonuclease L-PSP; KEGG: phe:Phep_0416 hypothetical protein; SPTR: uncharacterized protein; endoribonuclease L-PSP 4017421 10871976 Runsl_3440 Runella slithyformis DSM 19594 endoribonuclease L-PSP YP_004656938.1 4017035 R 761193 CDS YP_004656939.1 338212884 10871977 4017693..4018010 1 NC_015703.1 KEGG: sli:Slin_4309 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4018010 10871977 Runsl_3441 Runella slithyformis DSM 19594 hypothetical protein YP_004656939.1 4017693 D 761193 CDS YP_004656940.1 338212885 10871978 complement(4018096..4019412) 1 NC_015703.1 COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; InterPro IPR002903; KEGG: sli:Slin_4428 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; SPTR: Ribosomal RNA small subunit methyltransferase H; TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; hypothetical protein 4019412 10871978 Runsl_3442 Runella slithyformis DSM 19594 hypothetical protein YP_004656940.1 4018096 R 761193 CDS YP_004656941.1 338212886 10871979 4019752..4020654 1 NC_015703.1 PFAM: MraW methylase; TIGRFAM: S-adenosyl-methyltransferase MraW; KEGG: sli:Slin_4737 hypothetical protein; SPTR: uncharacterized protein; ribosomal RNA small subunit methyltransferase H 4020654 10871979 Runsl_3443 Runella slithyformis DSM 19594 ribosomal RNA small subunit methyltransferase H YP_004656941.1 4019752 D 761193 CDS YP_004656942.1 338212887 10871980 4020704..4021096 1 NC_015703.1 COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311:IPR001460:IPR005543; KEGG: sli:Slin_4738 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PASTA; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Peptidoglycan glycosyltransferase; hypothetical protein 4021096 10871980 Runsl_3444 Runella slithyformis DSM 19594 hypothetical protein YP_004656942.1 4020704 D 761193 CDS YP_004656943.1 338212888 10871981 4021133..4023328 1 NC_015703.1 PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sli:Slin_1892 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; peptidoglycan glycosyltransferase 4023328 10871981 Runsl_3445 Runella slithyformis DSM 19594 peptidoglycan glycosyltransferase YP_004656943.1 4021133 D 761193 CDS YP_004656944.1 338212889 10871982 complement(4023504..4024370) 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: dfe:Dfer_4258 hypothetical protein; SPTR: uncharacterized protein; xylose isomerase domain-containing protein 4024370 10871982 Runsl_3446 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004656944.1 4023504 R 761193 CDS YP_004656945.1 338212890 10871983 4024567..4025298 1 NC_015703.1 PFAM: Protein of unknown function (DUF2807); COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_2354 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; hypothetical protein 4025298 10871983 Runsl_3447 Runella slithyformis DSM 19594 hypothetical protein YP_004656945.1 4024567 D 761193 CDS YP_004656946.1 338212891 10871984 complement(4025455..4026216) 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: dfe:Dfer_2353 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; LytTR family two component transcriptional regulator 4026216 10871984 Runsl_3448 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004656946.1 4025455 R 761193 CDS YP_004656947.1 338212892 10871985 complement(4026232..4026870) 1 NC_015703.1 PFAM: Histidine kinase; COGs: COG1017 Hemoglobin-like flavoprotein; InterPro IPR000971; KEGG: azc:AZC_0683 hemoprotein; PFAM: Globin, subset; SPTR: hemoprotein; signal transduction histidine kinase 4026870 10871985 Runsl_3449 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004656947.1 4026232 R 761193 CDS YP_004656948.1 338212893 10871986 complement(4026874..4027290) 1 NC_015703.1 PFAM: Globin; COGs: COG3292 periplasmic ligand-binding sensor domain; InterPro IPR011110:IPR011123:IPR010559; KEGG: sli:Slin_5621 PAS/PAC sensor signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, internal region; Two component regulator three Y; Two component regulator propeller; SPTR: PAS/PAC sensor signal transduction histidine kinase; globin 4027290 10871986 Runsl_3450 Runella slithyformis DSM 19594 globin YP_004656948.1 4026874 R 761193 CDS YP_004656949.1 338212894 10871987 complement(4027408..4030608) 1 NC_015703.1 PFAM: Histidine kinase; Y_Y_Y domain; Two component regulator propeller; InterPro IPR019229; KEGG: dfe:Dfer_5116 hypothetical protein; PFAM: Protein of unknown function DUF2166; SPTR: uncharacterized protein; two component regulator propeller domain-containing protein 4030608 10871987 Runsl_3451 Runella slithyformis DSM 19594 two component regulator propeller domain-containing protein YP_004656949.1 4027408 R 761193 CDS YP_004656950.1 338212895 10871988 4031006..4031473 1 NC_015703.1 PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; hypothetical protein 4031473 10871988 Runsl_3452 Runella slithyformis DSM 19594 hypothetical protein YP_004656950.1 4031006 D 761193 CDS YP_004656951.1 338212896 10871989 complement(4031434..4031565) 1 NC_015703.1 KEGG: gym:GYMC10_2664 hypothetical protein; SPTR: integron gene cassette protein; hypothetical protein 4031565 10871989 Runsl_3453 Runella slithyformis DSM 19594 hypothetical protein YP_004656951.1 4031434 R 761193 CDS YP_004656952.1 338212897 10871990 complement(4031562..4031993) 1 NC_015703.1 KEGG: sli:Slin_1312 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4031993 10871990 Runsl_3454 Runella slithyformis DSM 19594 hypothetical protein YP_004656952.1 4031562 R 761193 CDS YP_004656953.1 338212898 10871991 4032153..4032674 1 NC_015703.1 PFAM: Protein of unknown function (DUF664); HAMAP: Protein of unknown function DUF1328; InterPro IPR009760; KEGG: fjo:Fjoh_4310 hypothetical protein; PFAM: Protein of unknown function DUF1328; SPTR: uncharacterized protein; hypothetical protein 4032674 10871991 Runsl_3455 Runella slithyformis DSM 19594 hypothetical protein YP_004656953.1 4032153 D 761193 CDS YP_004656954.1 338212899 10871992 4032823..4032984 1 NC_015703.1 PFAM: Protein of unknown function (DUF1328); Prodigal; manually curated; hypothetical protein 4032984 10871992 Runsl_3456 Runella slithyformis DSM 19594 hypothetical protein YP_004656954.1 4032823 D 761193 CDS YP_004656955.1 338212900 10871994 4033658..4036192 1 NC_015703.1 PFAM: carbohydrate binding domain; Glycosyl hydrolase 20, catalytic domain; Glycosyl hydrolase 20, domain 2; Chitobiase/beta-hexosaminidase C-terminal domain; KEGG: shg:Sph21_1312 hypothetical protein; SPTR: uncharacterized protein; beta-N-acetylhexosaminidase 4036192 10871994 Runsl_3458 Runella slithyformis DSM 19594 beta-N-acetylhexosaminidase YP_004656955.1 4033658 D 761193 CDS YP_004656956.1 338212901 10871995 4036351..4036854 1 NC_015703.1 PFAM: Protein of unknown function, DUF255; hypothetical protein 4036854 10871995 Runsl_3459 Runella slithyformis DSM 19594 hypothetical protein YP_004656956.1 4036351 D 761193 CDS YP_004656957.1 338212902 10871996 complement(4036776..4036988) 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 4036988 10871996 Runsl_3460 Runella slithyformis DSM 19594 hypothetical protein YP_004656957.1 4036776 R 761193 CDS YP_004656958.1 338212903 10871998 complement(4037842..4038054) 1 NC_015703.1 KEGG: npu:Npun_F6101 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4038054 10871998 Runsl_3462 Runella slithyformis DSM 19594 hypothetical protein YP_004656958.1 4037842 R 761193 CDS YP_004656959.1 338212904 10871999 complement(4038089..4038397) 1 NC_015703.1 InterPro IPR004843; KEGG: ppn:Palpr_0422 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; hypothetical protein 4038397 10871999 Runsl_3463 Runella slithyformis DSM 19594 hypothetical protein YP_004656959.1 4038089 R 761193 CDS YP_004656960.1 338212905 10872000 4038465..4039241 1 NC_015703.1 PFAM: Calcineurin-like phosphoesterase; COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: dfe:Dfer_3770 amino acid permease-associated region; PFAM: Amino acid permease-associated region; SPTR: Amino acid permease-associated region; metallophosphoesterase 4039241 10872000 Runsl_3464 Runella slithyformis DSM 19594 metallophosphoesterase YP_004656960.1 4038465 D 761193 CDS YP_004656961.1 338212906 10872001 complement(4039244..4040590) 1 NC_015703.1 PFAM: Amino acid permease; KEGG: sli:Slin_5705 hypothetical protein; SPTR: uncharacterized protein; amino acid permease 4040590 10872001 Runsl_3465 Runella slithyformis DSM 19594 amino acid permease YP_004656961.1 4039244 R 761193 CDS YP_004656962.1 338212907 10872002 4040755..4041387 1 NC_015703.1 KEGG: bbe:BBR47_05840 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4041387 10872002 Runsl_3466 Runella slithyformis DSM 19594 hypothetical protein YP_004656962.1 4040755 D 761193 CDS YP_004656963.1 338212908 10872003 4041454..4041999 1 NC_015703.1 COGs: COG0763 Lipid A disaccharide synthetase; InterPro IPR003835; KEGG: dfe:Dfer_2572 lipid-A-disaccharide synthase; PFAM: Glycosyl transferase, family 19; PRIAM: Lipid-A-disaccharide synthase; SPTR: Lipid-A-disaccharide synthase; TIGRFAM: Glycosyl transferase, family 19; hypothetical protein 4041999 10872003 Runsl_3467 Runella slithyformis DSM 19594 hypothetical protein YP_004656963.1 4041454 D 761193 CDS YP_004656964.1 338212909 10872004 complement(4042005..4043159) 1 NC_015703.1 PFAM: Lipid-A-disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase; COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: dfe:Dfer_2573 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; PFAM: 6-pyruvoyl tetrahydropterin synthase-related; SPTR: uncharacterized protein; lipid-A-disaccharide synthase 4043159 10872004 Runsl_3468 Runella slithyformis DSM 19594 lipid-A-disaccharide synthase YP_004656964.1 4042005 R 761193 CDS YP_004656965.1 338212910 10872005 complement(4043440..4043859) 1 NC_015703.1 PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: 6-pyruvoyl tetrahydropterin synthase/QueD family protein; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR011912; KEGG: sli:Slin_3451 ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: ADP-glyceromanno-heptose 6-epimerase; SPTR: ADP-L-glycero-D-manno-heptose-6-epimerase; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; hypothetical protein 4043859 10872005 Runsl_3469 Runella slithyformis DSM 19594 hypothetical protein YP_004656965.1 4043440 R 761193 CDS YP_004656966.1 338212911 10872006 4044127..4045092 1 NC_015703.1 PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; COGs: COG0789 transcriptional regulator protein; InterPro IPR000551:IPR006158; KEGG: sli:Slin_5173 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; Cobalamin (vitamin B12)-binding; SMART: HTH transcriptional regulator, MerR; SPTR: Transcriptional regulator, MerR family; ADP-L-glycero-D-manno-heptose-6-epimerase 4045092 10872006 Runsl_3470 Runella slithyformis DSM 19594 ADP-L-glycero-D-manno-heptose-6-epimerase YP_004656966.1 4044127 D 761193 CDS YP_004656967.1 338212912 10872007 complement(4045089..4045964) 1 NC_015703.1 PFAM: MerR family regulatory protein; COGs: COG2324 membrane protein; InterPro IPR007354; KEGG: mtt:Ftrac_1977 hypothetical protein; PFAM: Protein of unknown function DUF422; SPTR: Membrane protein; MerR family transcriptional regulator 4045964 10872007 Runsl_3471 Runella slithyformis DSM 19594 MerR family transcriptional regulator YP_004656967.1 4045089 R 761193 CDS YP_004656968.1 338212913 10872008 complement(4046272..4046937) 1 NC_015703.1 PFAM: Protein of unknown function (DUF422); hypothetical protein 4046937 10872008 Runsl_3472 Runella slithyformis DSM 19594 hypothetical protein YP_004656968.1 4046272 R 761193 CDS YP_004656969.1 338212914 10872010 4047312..4047758 1 NC_015703.1 PFAM: Yqey-like protein; InterPro IPR003825; KEGG: sli:Slin_4988 colicin V production protein; PFAM: Colicin V production protein; SPTR: Colicin V production protein; hypothetical protein 4047758 10872010 Runsl_3473 Runella slithyformis DSM 19594 hypothetical protein YP_004656969.1 4047312 D 761193 CDS YP_004656970.1 338212915 10872011 4047767..4048291 1 NC_015703.1 PFAM: Colicin V production protein; COGs: COG5495 conserved hypothetical protein; InterPro IPR004455:IPR018931; KEGG: dfe:Dfer_3502 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; PFAM: Domain of unknown function DUF2520; NADP oxidoreductase, coenzyme F420-dependent; SPTR: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; colicin V production protein 4048291 10872011 Runsl_3474 Runella slithyformis DSM 19594 colicin V production protein YP_004656970.1 4047767 D 761193 CDS YP_004656971.1 338212916 10872012 complement(4048334..4049122) 1 NC_015703.1 PFAM: Domain of unknown function (DUF2520); Rossmann-like domain; KEGG: dfe:Dfer_2807 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4049122 10872012 Runsl_3475 Runella slithyformis DSM 19594 hypothetical protein YP_004656971.1 4048334 R 761193 CDS YP_004656972.1 338212917 10872013 complement(4049288..4050871) 1 NC_015703.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_1017 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein 4050871 10872013 Runsl_3476 Runella slithyformis DSM 19594 hypothetical protein YP_004656972.1 4049288 R 761193 CDS YP_004656973.1 338212918 10872014 complement(4050945..4051541) 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: sli:Slin_0232 hypothetical protein; SPTR: uncharacterized protein; ECF subfamily RNA polymerase sigma-24 subunit 4051541 10872014 Runsl_3477 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004656973.1 4050945 R 761193 CDS YP_004656974.1 338212919 10872015 4051746..4052375 1 NC_015703.1 PFAM: Protein of unknown function (DUF2874); hypothetical protein 4052375 10872015 Runsl_3478 Runella slithyformis DSM 19594 hypothetical protein YP_004656974.1 4051746 D 761193 CDS YP_004656975.1 338212920 10872016 4053069..4053326 1 NC_015703.1 COGs: COG0038 Chloride channel protein EriC; InterPro IPR001807; KEGG: fjo:Fjoh_2371 Cl-channel, voltage-gated family protein; PFAM: Chloride channel, voltage gated; SPTR: uncharacterized protein; hypothetical protein 4053326 10872016 Runsl_3479 Runella slithyformis DSM 19594 hypothetical protein YP_004656975.1 4053069 D 761193 CDS YP_004656976.1 338212921 10872017 complement(4053529..4054767) 1 NC_015703.1 PFAM: Voltage gated chloride channel; InterPro IPR012910; KEGG: sli:Slin_2376 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; Cl- channel voltage-gated family protein 4054767 10872017 Runsl_3480 Runella slithyformis DSM 19594 Cl- channel voltage-gated family protein YP_004656976.1 4053529 R 761193 CDS YP_004656977.1 338212922 10872018 complement(4054942..4057338) 1 NC_015703.1 COGs: COG2839 conserved hypothetical protein; InterPro IPR007403; KEGG: lby:Lbys_1596 hypothetical protein; PFAM: Protein of unknown function DUF456; SPTR: uncharacterized protein; TonB-dependent receptor plug 4057338 10872018 Runsl_3481 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004656977.1 4054942 R 761193 CDS YP_004656978.1 338212923 10872019 complement(4057627..4058103) 1 NC_015703.1 PFAM: Protein of unknown function (DUF456); COGs: COG1748 Saccharopine dehydrogenase and related protein; InterPro IPR005097; KEGG: dfe:Dfer_2888 saccharopine dehydrogenase; PFAM: Saccharopine dehydrogenase; SPTR: Saccharopine dehydrogenase; hypothetical protein 4058103 10872019 Runsl_3482 Runella slithyformis DSM 19594 hypothetical protein YP_004656978.1 4057627 R 761193 CDS YP_004656979.1 338212924 10872020 4058432..4059643 1 NC_015703.1 PFAM: Saccharopine dehydrogenase; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR001140:IPR003439:IPR003593; KEGG: dfe:Dfer_4763 ABC transporter related; PFAM: ABC transporter-like; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; saccharopine dehydrogenase 4059643 10872020 Runsl_3483 Runella slithyformis DSM 19594 saccharopine dehydrogenase YP_004656979.1 4058432 D 761193 CDS YP_004656980.1 338212925 10872021 complement(4059716..4061479) 1 NC_015703.1 PFAM: ABC transporter; ABC transporter transmembrane region; KEGG: sli:Slin_0566 hypothetical protein; SPTR: uncharacterized protein; manually curated; xenobiotic-transporting ATPase 4061479 10872021 Runsl_3484 Runella slithyformis DSM 19594 xenobiotic-transporting ATPase YP_004656980.1 4059716 R 761193 CDS YP_004656981.1 338212926 10872022 4061751..4064999 1 NC_015703.1 KEGG: sli:Slin_1651 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4064999 10872022 Runsl_3485 Runella slithyformis DSM 19594 hypothetical protein YP_004656981.1 4061751 D 761193 CDS YP_004656982.1 338212927 10872023 complement(4065005..4065655) 1 NC_015703.1 COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR001962; KEGG: sli:Slin_0568 asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; SPTR: Asparagine synthase (Glutamine-hydrolyzing); hypothetical protein 4065655 10872023 Runsl_3486 Runella slithyformis DSM 19594 hypothetical protein YP_004656982.1 4065005 R 761193 CDS YP_004656983.1 338212928 10872024 complement(4065684..4067618) 1 NC_015703.1 PFAM: Asparagine synthase; asparagine synthase 4067618 10872024 Runsl_3487 Runella slithyformis DSM 19594 asparagine synthase YP_004656983.1 4065684 R 761193 CDS YP_004656984.1 338212929 10872025 4067647..4067775 1 NC_015703.1 KEGG: dfe:Dfer_5035 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4067775 10872025 Runsl_3488 Runella slithyformis DSM 19594 hypothetical protein YP_004656984.1 4067647 D 761193 CDS YP_004656985.1 338212930 10872026 4067842..4068126 1 NC_015703.1 PFAM: Coenzyme PQQ synthesis protein D (PqqD); KEGG: dfe:Dfer_5036 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4068126 10872026 Runsl_3489 Runella slithyformis DSM 19594 hypothetical protein YP_004656985.1 4067842 D 761193 CDS YP_004656986.1 338212931 10872027 4068098..4068532 1 NC_015703.1 KEGG: sli:Slin_2007 HPr kinase; SPTR: HPr kinase; hypothetical protein 4068532 10872027 Runsl_3490 Runella slithyformis DSM 19594 hypothetical protein YP_004656986.1 4068098 D 761193 CDS YP_004656987.1 338212932 10872028 4068575..4069465 1 NC_015703.1 InterPro IPR014982; KEGG: sli:Slin_1111 GSCFA domain protein; PFAM: GSCFA; SPTR: GSCFA domain protein; HPr kinase 4069465 10872028 Runsl_3491 Runella slithyformis DSM 19594 HPr kinase YP_004656987.1 4068575 D 761193 CDS YP_004656988.1 338212933 10872029 complement(4069462..4070448) 1 NC_015703.1 PFAM: GSCFA family; GSCFA domain-containing protein 4070448 10872029 Runsl_3492 Runella slithyformis DSM 19594 GSCFA domain-containing protein YP_004656988.1 4069462 R 761193 CDS YP_004656989.1 338212934 10872030 complement(4070619..4070720) 1 NC_015703.1 KEGG: dfe:Dfer_3779 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4070720 10872030 Runsl_3493 Runella slithyformis DSM 19594 hypothetical protein YP_004656989.1 4070619 R 761193 CDS YP_004656990.1 338212935 10872031 4070988..4072412 1 NC_015703.1 COGs: COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related protein; InterPro IPR001950; KEGG: dfe:Dfer_3941 translation initiation factor SUI1; PFAM: Translation initiation factor SUI1; SPTR: Translation initiation factor SUI1; hypothetical protein 4072412 10872031 Runsl_3494 Runella slithyformis DSM 19594 hypothetical protein YP_004656990.1 4070988 D 761193 CDS YP_004656991.1 338212936 10872032 complement(4072542..4072877) 1 NC_015703.1 PFAM: Translation initiation factor SUI1; TIGRFAM: translation initation factor SUI1, , prokaryotic; translation initiation factor SUI1 4072877 10872032 Runsl_3495 Runella slithyformis DSM 19594 translation initiation factor SUI1 YP_004656991.1 4072542 R 761193 CDS YP_004656992.1 338212937 10872033 4073053..4073406 1 NC_015703.1 KEGG: sli:Slin_3168 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4073406 10872033 Runsl_3496 Runella slithyformis DSM 19594 hypothetical protein YP_004656992.1 4073053 D 761193 CDS YP_004656993.1 338212938 10872034 4073435..4073797 1 NC_015703.1 KEGG: cbg:CbuG_1613 hypothetical protein; SPTR: Hypothetical exported protein; hypothetical protein 4073797 10872034 Runsl_3497 Runella slithyformis DSM 19594 hypothetical protein YP_004656993.1 4073435 D 761193 CDS YP_004656994.1 338212939 10872035 4073891..4074571 1 NC_015703.1 PFAM: Protein of unknown function (DUF2807); COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: sli:Slin_3167 response regulator receiver protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Response regulator receiver protein; hypothetical protein 4074571 10872035 Runsl_3498 Runella slithyformis DSM 19594 hypothetical protein YP_004656994.1 4073891 D 761193 CDS YP_004656995.1 338212940 10872036 4074618..4075757 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: ana:alr3189 beta-carotene ketolase; PFAM: Fatty acid desaturase, type 1; SPTR: CrtW; AraC family transcriptional regulator 4075757 10872036 Runsl_3499 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004656995.1 4074618 D 761193 CDS YP_004656996.1 338212941 10872037 4075820..4076545 1 NC_015703.1 PFAM: Fatty acid desaturase; COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: cno:NT01CX_2408 type I restriction-modification system DNA methylase; PFAM: DNA methylase, adenine-specific; SPTR: Type I restriction-modification system DNA methylase; fatty acid desaturase 4076545 10872037 Runsl_3500 Runella slithyformis DSM 19594 fatty acid desaturase YP_004656996.1 4075820 D 761193 CDS YP_004656997.1 338212942 10872038 4076634..4078712 1 NC_015703.1 PFAM: N-6 DNA Methylase; HsdM N-terminal domain; InterPro IPR000055; KEGG: tmt:Tmath_1863 restriction modification system DNA specificity domain protein; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Restriction modification system DNA specificity domain; N-6 DNA methylase 4078712 10872038 Runsl_3501 Runella slithyformis DSM 19594 N-6 DNA methylase YP_004656997.1 4076634 D 761193 CDS YP_004656998.1 338212943 10872039 4078709..4079368 1 NC_015703.1 PFAM: Type I restriction modification DNA specificity domain; COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated; restriction modification system DNA specificity domain-containing protein 4079368 10872039 Runsl_3502 Runella slithyformis DSM 19594 restriction modification system DNA specificity domain-containing protein YP_004656998.1 4078709 D 761193 CDS YP_004656999.1 338212944 10872040 complement(join(4079370..4079915,4079917..4080381)) 1 NC_015703.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; Prodigal; manually curated; transposase 4080381 10872040 Runsl_3503 Runella slithyformis DSM 19594 transposase YP_004656999.1 4079370 R 761193 CDS YP_004657000.1 338212945 10872043 4081764..4082300 1 NC_015703.1 InterPro IPR001387; KEGG: sli:Slin_4822 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family protein; hypothetical protein 4082300 10872043 Runsl_3506 Runella slithyformis DSM 19594 hypothetical protein YP_004657000.1 4081764 D 761193 CDS YP_004657001.1 338212946 10872044 4082305..4082709 1 NC_015703.1 PFAM: Helix-turn-helix; SPTR: uncharacterized protein; helix-turn-helix domain-containing protein 4082709 10872044 Runsl_3507 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004657001.1 4082305 D 761193 CDS YP_004657002.1 338212947 10872045 4082699..4083139 1 NC_015703.1 COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR007409:IPR006935:IPR014001:IPR004473; KEGG: pcr:Pcryo_2363 HsdR family type I site-specific deoxyribonuclease; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; SPTR: HsdR family type I site-specific deoxyribonuclease; TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; hypothetical protein 4083139 10872045 Runsl_3508 Runella slithyformis DSM 19594 hypothetical protein YP_004657002.1 4082699 D 761193 CDS YP_004657003.1 338212948 10872046 4083152..4086367 1 NC_015703.1 PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; KEGG: bpb:bpr_I1711 hypothetical protein; SPTR: uncharacterized protein; HsdR family type I site-specific deoxyribonuclease 4086367 10872046 Runsl_3509 Runella slithyformis DSM 19594 HsdR family type I site-specific deoxyribonuclease YP_004657003.1 4083152 D 761193 CDS YP_004657004.1 338212949 10872047 4086354..4087544 1 NC_015703.1 COGs: COG1564 Thiamine pyrophosphokinase; InterPro IPR007371:IPR007373:IPR006282; KEGG: sli:Slin_2799 thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic domain; Thiamin pyrophosphokinase, vitamin B1-binding region; SPTR: Thiamine pyrophosphokinase; TIGRFAM: Thiamin pyrophosphokinase; hypothetical protein 4087544 10872047 Runsl_3510 Runella slithyformis DSM 19594 hypothetical protein YP_004657004.1 4086354 D 761193 CDS YP_004657005.1 338212950 10872048 4087624..4088286 1 NC_015703.1 PFAM: Thiamin pyrophosphokinase, vitamin B1 binding domain; Thiamin pyrophosphokinase, catalytic domain; TIGRFAM: thiamine pyrophosphokinase; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341:IPR013342; KEGG: sli:Slin_0013 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; PRIAM: Chloromuconate cycloisomerase; SPTR: Mandelate racemase/muconate lactonizing protein; thiamine pyrophosphokinase 4088286 10872048 Runsl_3511 Runella slithyformis DSM 19594 thiamine pyrophosphokinase YP_004657005.1 4087624 D 761193 CDS YP_004657006.1 338212951 10872049 4088340..4089446 1 NC_015703.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; KEGG: sli:Slin_3230 hypothetical protein; SPTR: uncharacterized protein; chloromuconate cycloisomerase 4089446 10872049 Runsl_3512 Runella slithyformis DSM 19594 chloromuconate cycloisomerase YP_004657006.1 4088340 D 761193 CDS YP_004657007.1 338212952 10872050 complement(4089465..4090037) 1 NC_015703.1 COGs: COG0074 Succinyl-CoA synthetase alpha subunit; InterPro IPR003781:IPR005811:IPR005810; KEGG: sli:Slin_3229 succinyl-CoA synthetase, subunit alpha; PFAM: CoA-binding; ATP-citrate lyase/succinyl-CoA ligase; PRIAM: Succinate--CoA ligase (ADP-forming); SPTR: Succinyl-CoA ligase [ADP-forming] subunit alpha; TIGRFAM: Succinyl-CoA ligase, alpha subunit; hypothetical protein 4090037 10872050 Runsl_3513 Runella slithyformis DSM 19594 hypothetical protein YP_004657007.1 4089465 R 761193 CDS YP_004657008.1 338212953 10872051 4090317..4091192 1 NC_015703.1 PFAM: CoA binding domain; CoA-ligase; TIGRFAM: succinyl-CoA synthetase, alpha subunit; KEGG: sli:Slin_3228 hypothetical protein; SPTR: uncharacterized protein; succinyl-CoA synthetase subunit alpha 4091192 10872051 Runsl_3514 Runella slithyformis DSM 19594 succinyl-CoA synthetase subunit alpha YP_004657008.1 4090317 D 761193 CDS YP_004657009.1 338212954 10872052 4091333..4092460 1 NC_015703.1 COGs: COG1587 Uroporphyrinogen-III synthase; InterPro IPR003754; KEGG: dfe:Dfer_2913 uroporphyrinogen III synthase HEM4; PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; SPTR: Uroporphyrinogen III synthase HEM4; hypothetical protein 4092460 10872052 Runsl_3515 Runella slithyformis DSM 19594 hypothetical protein YP_004657009.1 4091333 D 761193 CDS YP_004657010.1 338212955 10872053 4092492..4093274 1 NC_015703.1 PFAM: Uroporphyrinogen-III synthase HemD; InterPro IPR019861; KEGG: sli:Slin_3226 hypothetical protein; SPTR: membrane protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; uroporphyrinogen III synthase HEM4 4093274 10872053 Runsl_3516 Runella slithyformis DSM 19594 uroporphyrinogen III synthase HEM4 YP_004657010.1 4092492 D 761193 CDS YP_004657011.1 338212956 10872054 4093438..4094409 1 NC_015703.1 PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein; COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: sli:Slin_3225 hypothetical protein; PFAM: Sulphatase-modifying factor; SPTR: uncharacterized protein; hypothetical protein 4094409 10872054 Runsl_3517 Runella slithyformis DSM 19594 hypothetical protein YP_004657011.1 4093438 D 761193 CDS YP_004657012.1 338212957 10872055 4094671..4095780 1 NC_015703.1 PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: gliding motility-associated lipoprotein GldK; InterPro IPR019852; KEGG: sli:Slin_3224 gliding motility-associated protein GldL; SPTR: Gliding motility-associated protein GldL; TIGRFAM: Gliding motility-associated protein, GldL; sulfatase-modifying factor protein 4095780 10872055 Runsl_3518 Runella slithyformis DSM 19594 sulfatase-modifying factor protein YP_004657012.1 4094671 D 761193 CDS YP_004657013.1 338212958 10872056 4095889..4096692 1 NC_015703.1 TIGRFAM: gliding motility-associated protein GldL; InterPro IPR019859; KEGG: sli:Slin_3223 gliding motility-associated protein GldM; SPTR: Gliding motility-associated protein GldM; TIGRFAM: Gliding motility-associated protein GldM; gliding motility-associated protein GldL 4096692 10872056 Runsl_3519 Runella slithyformis DSM 19594 gliding motility-associated protein GldL YP_004657013.1 4095889 D 761193 CDS YP_004657014.1 338212959 10872057 4096811..4098406 1 NC_015703.1 PFAM: GldM C-terminal domain; GldM N-terminal domain; TIGRFAM: gliding motility-associated protein GldM; InterPro IPR019847; KEGG: sli:Slin_3222 gliding motility associated protein GldN; SPTR: Gliding motility associated protein GldN; TIGRFAM: Gliding motility associated protein GldN; gliding motility-associated protein GldM 4098406 10872057 Runsl_3520 Runella slithyformis DSM 19594 gliding motility-associated protein GldM YP_004657014.1 4096811 D 761193 CDS YP_004657015.1 338212960 10872058 4098487..4099566 1 NC_015703.1 TIGRFAM: gliding motility associated protein GldN; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_1147 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; manually curated; gliding motility associated protein GldN 4099566 10872058 Runsl_3521 Runella slithyformis DSM 19594 gliding motility associated protein GldN YP_004657015.1 4098487 D 761193 CDS YP_004657016.1 338212961 10872059 complement(4099630..4100640) 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG2003 DNA repair protein; InterPro IPR000445:IPR001405; KEGG: sli:Slin_0523 DNA repair protein RadC; PFAM: DNA repair, RadC-like; Helix-hairpin-helix motif; SPTR: DNA repair protein RadC; TIGRFAM: DNA repair, RadC-like; family 2 glycosyl transferase 4100640 10872059 Runsl_3522 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004657016.1 4099630 R 761193 CDS YP_004657017.1 338212962 10872060 4100702..4101406 1 NC_015703.1 PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc; COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: aba:Acid345_3835 amino acid transporter; PFAM: Amino acid permease-associated region; SPTR: Amino acid/polyamine/organocation transporter, APC superfamily; DNA repair protein RadC 4101406 10872060 Runsl_3523 Runella slithyformis DSM 19594 DNA repair protein RadC YP_004657017.1 4100702 D 761193 CDS YP_004657018.1 338212963 10872061 4101459..4102784 1 NC_015703.1 PFAM: Amino acid permease; KEGG: fjo:Fjoh_2177 hypothetical protein; SPTR: uncharacterized protein; amino acid permease 4102784 10872061 Runsl_3524 Runella slithyformis DSM 19594 amino acid permease YP_004657018.1 4101459 D 761193 CDS YP_004657019.1 338212964 10872062 4102789..4103238 1 NC_015703.1 PFAM: Protein of unknown function (DUF1572); KEGG: dfe:Dfer_2493 twin-arginine translocation pathway signal; SPTR: Twin-arginine translocation pathway signal; hypothetical protein 4103238 10872062 Runsl_3525 Runella slithyformis DSM 19594 hypothetical protein YP_004657019.1 4102789 D 761193 CDS YP_004657020.1 338212965 10872063 4103434..4104117 1 NC_015703.1 COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076:IPR000172; KEGG: dfe:Dfer_2494 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; twin-arginine translocation pathway signal 4104117 10872063 Runsl_3526 Runella slithyformis DSM 19594 twin-arginine translocation pathway signal YP_004657020.1 4103434 D 761193 CDS YP_004657021.1 338212966 10872064 4104150..4105865 1 NC_015703.1 PFAM: GMC oxidoreductase; Prodigal; manually curated; glucose-methanol-choline oxidoreductase 4105865 10872064 Runsl_3527 Runella slithyformis DSM 19594 glucose-methanol-choline oxidoreductase YP_004657021.1 4104150 D 761193 CDS YP_004657022.1 338212967 10872066 complement(4106754..4107539) 1 NC_015703.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_2868 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; hypothetical protein 4107539 10872066 Runsl_3529 Runella slithyformis DSM 19594 hypothetical protein YP_004657022.1 4106754 R 761193 CDS YP_004657023.1 338212968 10872067 complement(4107951..4108727) 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_2867 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; LytTR family two component transcriptional regulator 4108727 10872067 Runsl_3530 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004657023.1 4107951 R 761193 CDS YP_004657024.1 338212969 10872068 complement(4108724..4109842) 1 NC_015703.1 PFAM: Histidine kinase; COGs: COG0474 Cation transport ATPase; InterPro IPR008250:IPR005834:IPR006068:IPR001757; KEGG: cao:Celal_3035 atpase, p-type (transporting), had superfamily, subfamily IC; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal; PRIAM: Calcium-transporting ATPase; SPTR: ATPase, P-type (Transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; signal transduction histidine kinase 4109842 10872068 Runsl_3531 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004657024.1 4108724 R 761193 CDS YP_004657025.1 338212970 10872069 complement(4109974..4112472) 1 NC_015703.1 PFAM: E1-E2 ATPase; Cation transporting ATPase, C-terminus; haloacid dehalogenase-like hydrolase; Cation transporter/ATPase, N-terminus; TIGRFAM: plasma-membrane calcium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692; KEGG: sli:Slin_4469 peptidase S45 penicillin amidase; PFAM: Peptidase S45, penicillin amidase; PRIAM: Glutaryl-7-aminocephalosporanic-acid acylase; SPTR: Peptidase S45 penicillin amidase; P-type HAD superfamily ATPase 4112472 10872069 Runsl_3532 Runella slithyformis DSM 19594 P-type HAD superfamily ATPase YP_004657025.1 4109974 R 761193 CDS YP_004657026.1 338212971 10872070 4112596..4114782 1 NC_015703.1 PFAM: Penicillin amidase; COGs: COG3530 conserved hypothetical protein; KEGG: phe:Phep_0021 hypothetical protein; SPTR: uncharacterized protein; glutaryl-7-aminocephalosporanic-acid acylase 4114782 10872070 Runsl_3533 Runella slithyformis DSM 19594 glutaryl-7-aminocephalosporanic-acid acylase YP_004657026.1 4112596 D 761193 CDS YP_004657027.1 338212972 10872071 4114895..4115119 1 NC_015703.1 KEGG: cao:Celal_3797 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4115119 10872071 Runsl_3534 Runella slithyformis DSM 19594 hypothetical protein YP_004657027.1 4114895 D 761193 CDS YP_004657028.1 338212973 10872072 4115128..4115874 1 NC_015703.1 COGs: COG3268 conserved hypothetical protein; InterPro IPR005097; KEGG: cpi:Cpin_5762 saccharopine dehydrogenase; PFAM: Saccharopine dehydrogenase; SPTR: Saccharopine dehydrogenase; hypothetical protein 4115874 10872072 Runsl_3535 Runella slithyformis DSM 19594 hypothetical protein YP_004657028.1 4115128 D 761193 CDS YP_004657029.1 338212974 10872073 complement(4115896..4116945) 1 NC_015703.1 PFAM: Saccharopine dehydrogenase; KEGG: zpr:ZPR_3092 hypothetical protein; SPTR: uncharacterized protein; saccharopine dehydrogenase 4116945 10872073 Runsl_3536 Runella slithyformis DSM 19594 saccharopine dehydrogenase YP_004657029.1 4115896 R 761193 CDS YP_004657030.1 338212975 10872074 4117108..4117863 1 NC_015703.1 COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: fps:FP2000 thioredoxin family protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Pyridine nucleotide-disulphide oxidoreductase; hypothetical protein 4117863 10872074 Runsl_3537 Runella slithyformis DSM 19594 hypothetical protein YP_004657030.1 4117108 D 761193 CDS YP_004657031.1 338212976 10872075 complement(4117867..4118262) 1 NC_015703.1 PFAM: Rhodanese-like domain; KEGG: wvi:Weevi_0462 hypothetical protein; SPTR: uncharacterized protein; rhodanese-like protein 4118262 10872075 Runsl_3538 Runella slithyformis DSM 19594 rhodanese-like protein YP_004657031.1 4117867 R 761193 CDS YP_004657032.1 338212977 10872076 complement(4118274..4118834) 1 NC_015703.1 PFAM: Protein of unknown function (DUF3365); KEGG: psn:Pedsa_1895 protein tyrosine phosphatase; SPTR: Low molecular weight phosphatase; hypothetical protein 4118834 10872076 Runsl_3539 Runella slithyformis DSM 19594 hypothetical protein YP_004657032.1 4118274 R 761193 CDS YP_004657033.1 338212978 10872077 complement(4119189..4119806) 1 NC_015703.1 PFAM: Low molecular weight phosphotyrosine protein phosphatase; COGs: COG0798 Arsenite efflux pump ACR3 and related permease; InterPro IPR002657:IPR004706; KEGG: dfe:Dfer_0846 arsenical-resistance protein; PFAM: Bile acid:sodium symporter; SPTR: Arsenical-resistance protein; TIGRFAM: Arsenical-resistance protein ACR3; protein tyrosine phosphatase 4119806 10872077 Runsl_3540 Runella slithyformis DSM 19594 protein tyrosine phosphatase YP_004657033.1 4119189 R 761193 CDS YP_004657034.1 338212979 10872078 complement(4119803..4120840) 1 NC_015703.1 PFAM: Sodium Bile acid symporter family; TIGRFAM: arsenical-resistance protein; InterPro IPR001845; KEGG: lbf:LBF_2770 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family; arsenical-resistance protein 4120840 10872078 Runsl_3541 Runella slithyformis DSM 19594 arsenical-resistance protein YP_004657034.1 4119803 R 761193 CDS YP_004657035.1 338212980 10872079 complement(4120885..4121226) 1 NC_015703.1 PFAM: Bacterial regulatory protein, arsR family; KEGG: dfe:Dfer_1543 hypothetical protein; SPTR: uncharacterized protein; regulatory protein ArsR 4121226 10872079 Runsl_3542 Runella slithyformis DSM 19594 regulatory protein ArsR YP_004657035.1 4120885 R 761193 CDS YP_004657036.1 338212981 10872080 complement(4121380..4122150) 1 NC_015703.1 hypothetical protein 4122150 10872080 Runsl_3543 Runella slithyformis DSM 19594 hypothetical protein YP_004657036.1 4121380 R 761193 CDS YP_004657037.1 338212982 10872081 4122183..4122278 1 NC_015703.1 KEGG: bth:BT_3435 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4122278 10872081 Runsl_3544 Runella slithyformis DSM 19594 hypothetical protein YP_004657037.1 4122183 D 761193 CDS YP_004657038.1 338212983 10872082 complement(4122314..4122607) 1 NC_015703.1 KEGG: fbc:FB2170_17341 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4122607 10872082 Runsl_3545 Runella slithyformis DSM 19594 hypothetical protein YP_004657038.1 4122314 R 761193 CDS YP_004657039.1 338212984 10872083 complement(4122743..4122949) 1 NC_015703.1 PFAM: Protein of unknown function (DUF2892); COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR013766:IPR005746; KEGG: shg:Sph21_3201 thioredoxin; PFAM: Thioredoxin domain; SPTR: Thioredoxin C-2; TIGRFAM: Thioredoxin; hypothetical protein 4122949 10872083 Runsl_3546 Runella slithyformis DSM 19594 hypothetical protein YP_004657039.1 4122743 R 761193 CDS YP_004657040.1 338212985 10872084 complement(4123207..4123524) 1 NC_015703.1 PFAM: Thioredoxin; TIGRFAM: thioredoxin; KEGG: sli:Slin_6448 hypothetical protein; SPTR: uncharacterized protein; thioredoxin 4123524 10872084 Runsl_3547 Runella slithyformis DSM 19594 thioredoxin YP_004657040.1 4123207 R 761193 CDS YP_004657041.1 338212986 10872085 complement(4123599..4123802) 1 NC_015703.1 KEGG: sli:Slin_6447 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4123802 10872085 Runsl_3548 Runella slithyformis DSM 19594 hypothetical protein YP_004657041.1 4123599 R 761193 CDS YP_004657042.1 338212987 10872086 complement(4123786..4124067) 1 NC_015703.1 COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: cly:Celly_0541 rhodanese-like protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: uncharacterized protein; hypothetical protein 4124067 10872086 Runsl_3549 Runella slithyformis DSM 19594 hypothetical protein YP_004657042.1 4123786 R 761193 CDS YP_004657043.1 338212988 10872087 complement(4124067..4124393) 1 NC_015703.1 PFAM: Rhodanese-like domain; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: sli:Slin_4055 histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SPTR: Histidine kinase; rhodanese-like protein 4124393 10872087 Runsl_3550 Runella slithyformis DSM 19594 rhodanese-like protein YP_004657043.1 4124067 R 761193 CDS YP_004657044.1 338212989 10872088 complement(4124476..4125843) 1 NC_015703.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: dfe:Dfer_2743 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family; integral membrane sensor signal transduction histidine kinase 4125843 10872088 Runsl_3551 Runella slithyformis DSM 19594 integral membrane sensor signal transduction histidine kinase YP_004657044.1 4124476 R 761193 CDS YP_004657045.1 338212990 10872089 complement(4125840..4126544) 1 NC_015703.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_4056 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; winged helix family two component transcriptional regulator 4126544 10872089 Runsl_3552 Runella slithyformis DSM 19594 winged helix family two component transcriptional regulator YP_004657045.1 4125840 R 761193 CDS YP_004657046.1 338212991 10872090 4126679..4127926 1 NC_015703.1 PFAM: Outer membrane efflux protein; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_2746 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; outer membrane efflux protein 4127926 10872090 Runsl_3553 Runella slithyformis DSM 19594 outer membrane efflux protein YP_004657046.1 4126679 D 761193 CDS YP_004657047.1 338212992 10872091 4127928..4129013 1 NC_015703.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG3696 silver efflux pump; InterPro IPR001036:IPR004763; KEGG: dfe:Dfer_2747 heavy metal efflux pump, CzcA family; PFAM: Acriflavin resistance protein; SPTR: Heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; RND family efflux transporter MFP subunit 4129013 10872091 Runsl_3554 Runella slithyformis DSM 19594 RND family efflux transporter MFP subunit YP_004657047.1 4127928 D 761193 CDS YP_004657048.1 338212993 10872092 4129080..4132193 1 NC_015703.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); InterPro IPR001440:IPR019734; KEGG: sli:Slin_4799 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; CzcA family heavy metal efflux pump 4132193 10872092 Runsl_3555 Runella slithyformis DSM 19594 CzcA family heavy metal efflux pump YP_004657048.1 4129080 D 761193 CDS YP_004657049.1 338212994 10872093 complement(4132278..4133969) 1 NC_015703.1 KEGG: sli:Slin_4797 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4133969 10872093 Runsl_3556 Runella slithyformis DSM 19594 hypothetical protein YP_004657049.1 4132278 R 761193 CDS YP_004657050.1 338212995 10872094 complement(4134017..4134937) 1 NC_015703.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: sli:Slin_1850 histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SPTR: Histidine kinase; hypothetical protein 4134937 10872094 Runsl_3557 Runella slithyformis DSM 19594 hypothetical protein YP_004657050.1 4134017 R 761193 CDS YP_004657051.1 338212996 10872095 complement(4135081..4136463) 1 NC_015703.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: dfe:Dfer_2743 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family; integral membrane sensor signal transduction histidine kinase 4136463 10872095 Runsl_3558 Runella slithyformis DSM 19594 integral membrane sensor signal transduction histidine kinase YP_004657051.1 4135081 R 761193 CDS YP_004657052.1 338212997 10872096 complement(4136467..4137159) 1 NC_015703.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: fba:FIC_01253 UspA; PFAM: UspA; SPTR: UspA; winged helix family two component transcriptional regulator 4137159 10872096 Runsl_3559 Runella slithyformis DSM 19594 winged helix family two component transcriptional regulator YP_004657052.1 4136467 R 761193 CDS YP_004657053.1 338212998 10872097 complement(4137300..4138211) 1 NC_015703.1 PFAM: Universal stress protein family; KEGG: sli:Slin_0579 hypothetical protein; SPTR: uncharacterized protein; UspA domain-containing protein 4138211 10872097 Runsl_3560 Runella slithyformis DSM 19594 UspA domain-containing protein YP_004657053.1 4137300 R 761193 CDS YP_004657054.1 338212999 10872098 complement(4138559..4138921) 1 NC_015703.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: lby:Lbys_3423 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; hypothetical protein 4138921 10872098 Runsl_3561 Runella slithyformis DSM 19594 hypothetical protein YP_004657054.1 4138559 R 761193 CDS YP_004657055.1 338213000 10872099 complement(4139363..4140235) 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: cbh:CLC_0364 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: uncharacterized protein; AraC family transcriptional regulator 4140235 10872099 Runsl_3562 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004657055.1 4139363 R 761193 CDS YP_004657056.1 338213001 10872100 4140670..4141506 1 NC_015703.1 COGs: COG0353 Recombinational DNA repair protein (RecF pathway); HAMAP: Recombination protein recR; InterPro IPR015967:IPR006171:IPR006154:IPR000093; KEGG: sli:Slin_1600 recombination protein RecR; SMART: Toprim domain, subgroup; SPTR: Recombination protein recR; TIGRFAM: RecR protein; AraC family transcriptional regulator 4141506 10872100 Runsl_3563 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004657056.1 4140670 D 761193 CDS YP_004657057.1 338213002 10872101 4141585..4142190 1 NC_015703.1 PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR; KEGG: sli:Slin_0442 anti-FecI sigma factor, FecR; SPTR: Anti-FecI sigma factor, FecR; Recombination protein recR 4142190 10872101 Runsl_3564 Runella slithyformis DSM 19594 Recombination protein recR YP_004657057.1 4141585 D 761193 CDS YP_004657058.1 338213003 10872102 4142344..4142721 1 NC_015703.1 InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_5672 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; anti-FecI sigma factor FecR 4142721 10872102 Runsl_3565 Runella slithyformis DSM 19594 anti-FecI sigma factor FecR YP_004657058.1 4142344 D 761193 CDS YP_004657059.1 338213004 10872103 4143040..4146156 1 NC_015703.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_5673 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 4146156 10872103 Runsl_3566 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004657059.1 4143040 D 761193 CDS YP_004657060.1 338213005 10872104 4146170..4147852 1 NC_015703.1 PFAM: SusD family; COGs: COG1162 GTPase; HAMAP: ribosome biogenesis GTPase RsgA; InterPro IPR004881; KEGG: dfe:Dfer_3198 ribosome-associated GTPase; PFAM: GTPase EngC; SPTR: ribosome biogenesis GTPase RsgA 2; TIGRFAM: GTPase EngC; RagB/SusD domain-containing protein 4147852 10872104 Runsl_3567 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004657060.1 4146170 D 761193 CDS YP_004657061.1 338213006 10872105 complement(4147950..4148972) 1 NC_015703.1 PFAM: Protein of unknown function, DUF258; TIGRFAM: ribosome small subunit-dependent GTPase A; COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR002658; KEGG: sli:Slin_2803 iron-containing alcohol dehydrogenase; PFAM: 3-dehydroquinate synthase AroB; SPTR: Iron-containing alcohol dehydrogenase; ribosome biogenesis GTPase RsgA 4148972 10872105 Runsl_3568 Runella slithyformis DSM 19594 ribosome biogenesis GTPase RsgA YP_004657061.1 4147950 R 761193 CDS YP_004657062.1 338213007 10872106 complement(4148974..4150053) 1 NC_015703.1 PFAM: Iron-containing alcohol dehydrogenase; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: sli:Slin_2804 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: Glutamine--scyllo-inositol transaminase; 3-dehydroquinate synthase 4150053 10872106 Runsl_3569 Runella slithyformis DSM 19594 3-dehydroquinate synthase YP_004657062.1 4148974 R 761193 CDS YP_004657063.1 338213008 10872107 complement(4150100..4151308) 1 NC_015703.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130; KEGG: sli:Slin_5486 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; SPTR: Peptidyl-prolyl cis-trans isomerase cyclophilin type; glutamine--scyllo-inositol transaminase 4151308 10872107 Runsl_3570 Runella slithyformis DSM 19594 glutamine--scyllo-inositol transaminase YP_004657063.1 4150100 R 761193 CDS YP_004657064.1 338213009 10872108 complement(4151636..4152223) 1 NC_015703.1 PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sli:Slin_6756 efflux transporter, RND family, MFP subunit; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; cyclophilin type peptidyl-prolyl cis-trans isomerase 4152223 10872108 Runsl_3571 Runella slithyformis DSM 19594 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_004657064.1 4151636 R 761193 CDS YP_004657065.1 338213010 10872109 complement(4152333..4153454) 1 NC_015703.1 TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG3696 silver efflux pump; InterPro IPR001036:IPR003423:IPR004763; KEGG: chu:CHU_1512 cation efflux protein; PFAM: Acriflavin resistance protein; Outer membrane efflux protein; SPTR: Cation efflux system protein CzcA; TIGRFAM: Heavy metal efflux pump CzcA; RND family efflux transporter MFP subunit 4153454 10872109 Runsl_3572 Runella slithyformis DSM 19594 RND family efflux transporter MFP subunit YP_004657065.1 4152333 R 761193 CDS YP_004657066.1 338213011 10872110 complement(4153555..4157865) 1 NC_015703.1 PFAM: Outer membrane efflux protein; AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); CzcA family heavy metal efflux pump 4157865 10872110 Runsl_3573 Runella slithyformis DSM 19594 CzcA family heavy metal efflux pump YP_004657066.1 4153555 R 761193 CDS YP_004657067.1 338213012 10872111 4158001..4158141 1 NC_015703.1 KEGG: sli:Slin_3178 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4158141 10872111 Runsl_3574 Runella slithyformis DSM 19594 hypothetical protein YP_004657067.1 4158001 D 761193 CDS YP_004657068.1 338213013 10872112 complement(4158110..4158490) 1 NC_015703.1 COGs: COG1918 Fe2+ transport system protein A; InterPro IPR007167; KEGG: sli:Slin_1450 FeoA family protein; PFAM: Ferrous iron transporter, FeoA subunit; SPTR: FeoA family protein; hypothetical protein 4158490 10872112 Runsl_3575 Runella slithyformis DSM 19594 hypothetical protein YP_004657068.1 4158110 R 761193 CDS YP_004657069.1 338213014 10872113 4158756..4159016 1 NC_015703.1 PFAM: FeoA domain; COGs: COG0370 Fe2+ transport system protein B; InterProIPR002917:IPR011619:IPR011642:IPR011640:IPR 005225:IPR003373; KEGG: sli:Slin_1451 ferrous iron transporter B; PFAM: Ferrous iron transport protein B, N-terminal; GTP-binding protein, HSR1-related; Nucleoside recognition; Ferrous iron transport protein B, C-terminal; SPTR: Ferrous iron transport protein B; TIGRFAM: Ferrous iron transport protein B; Small GTP-binding protein; FeoA family protein 4159016 10872113 Runsl_3576 Runella slithyformis DSM 19594 FeoA family protein YP_004657069.1 4158756 D 761193 CDS YP_004657070.1 338213015 10872114 4159023..4161152 1 NC_015703.1 PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: sli:Slin_2483 histone deacetylase; PFAM: Histone deacetylase superfamily; SPTR: Histone deacetylase; ferrous iron transport protein B 4161152 10872114 Runsl_3577 Runella slithyformis DSM 19594 ferrous iron transport protein B YP_004657070.1 4159023 D 761193 CDS YP_004657071.1 338213016 10872115 complement(4161239..4162156) 1 NC_015703.1 PFAM: Histone deacetylase domain; KEGG: dfe:Dfer_2764 hypothetical protein; SPTR: uncharacterized protein; histone deacetylase superfamily protein 4162156 10872115 Runsl_3578 Runella slithyformis DSM 19594 histone deacetylase superfamily protein YP_004657071.1 4161239 R 761193 CDS YP_004657072.1 338213017 10872116 4162228..4162833 1 NC_015703.1 KEGG: dfe:Dfer_2765 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4162833 10872116 Runsl_3579 Runella slithyformis DSM 19594 hypothetical protein YP_004657072.1 4162228 D 761193 CDS YP_004657073.1 338213018 10872117 4162892..4163569 1 NC_015703.1 COGs: COG1765 redox protein regulator of disulfide bond formation; InterPro IPR003718; KEGG: dfe:Dfer_5001 OsmC family protein; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: OsmC family protein; hypothetical protein 4163569 10872117 Runsl_3580 Runella slithyformis DSM 19594 hypothetical protein YP_004657073.1 4162892 D 761193 CDS YP_004657074.1 338213019 10872118 complement(4163636..4164058) 1 NC_015703.1 PFAM: OsmC-like protein; KEGG: sli:Slin_1014 hypothetical protein; SPTR: uncharacterized protein; OsmC family protein 4164058 10872118 Runsl_3581 Runella slithyformis DSM 19594 OsmC family protein YP_004657074.1 4163636 R 761193 CDS YP_004657075.1 338213020 10872119 complement(4164099..4164464) 1 NC_015703.1 PFAM: Domain of unknown function (DUF3471); COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130; KEGG: lby:Lbys_2390 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; SPTR: Peptidyl-prolyl cis-trans isomerase; hypothetical protein 4164464 10872119 Runsl_3582 Runella slithyformis DSM 19594 hypothetical protein YP_004657075.1 4164099 R 761193 CDS YP_004657076.1 338213021 10872120 complement(4164492..4164935) 1 NC_015703.1 PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR002937; KEGG: sli:Slin_0654 amine oxidase; PFAM: Amine oxidase; SPTR: Amine oxidase; cyclophilin type peptidyl-prolyl cis-trans isomerase 4164935 10872120 Runsl_3583 Runella slithyformis DSM 19594 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_004657076.1 4164492 R 761193 CDS YP_004657077.1 338213022 10872121 4165074..4166357 1 NC_015703.1 PFAM: Flavin containing amine oxidoreductase; COGs: COG3380 NAD/FAD-dependent oxidoreductase; InterPro IPR002937; KEGG: sli:Slin_4691 FAD dependent oxidoreductase; PFAM: Amine oxidase; SPTR: FAD dependent oxidoreductase; manually curated; amine oxidase 4166357 10872121 Runsl_3584 Runella slithyformis DSM 19594 amine oxidase YP_004657077.1 4165074 D 761193 CDS YP_004657078.1 338213023 10872122 complement(4166509..4167471) 1 NC_015703.1 PFAM: Flavin containing amine oxidoreductase; COGs: COG0104 Adenylosuccinate synthase; HAMAP: Adenylosuccinate synthetase; InterPro IPR001114; KEGG: dfe:Dfer_4579 adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; PRIAM: Adenylosuccinate synthase; SMART: Adenylosuccinate synthetase; SPTR: Adenylosuccinate synthetase 2; TIGRFAM: Adenylosuccinate synthetase; amine oxidase 4167471 10872122 Runsl_3585 Runella slithyformis DSM 19594 amine oxidase YP_004657078.1 4166509 R 761193 CDS YP_004657079.1 338213024 10872123 complement(4167766..4169055) 1 NC_015703.1 PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: sli:Slin_1610 Fur family ferric uptake regulator; PFAM: Ferric-uptake regulator; SPTR: Ferric uptake regulator, Fur family; adenylosuccinate synthetase 4169055 10872123 Runsl_3586 Runella slithyformis DSM 19594 adenylosuccinate synthetase YP_004657079.1 4167766 R 761193 CDS YP_004657080.1 338213025 10872124 complement(4169059..4169559) 1 NC_015703.1 PFAM: Ferric uptake regulator family; COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterProIPR006674:IPR007685:IPR004095:IPR002912:IPR 003607:IPR004811; KEGG: sli:Slin_1611 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD region, subdomain; TGS; Amino acid-binding ACT; PRIAM: GTP diphosphokinase; SMART: Metal-dependent phosphohydrolase, HD region; SPTR: (P)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT protein; Fur family ferric uptake regulator 4169559 10872124 Runsl_3587 Runella slithyformis DSM 19594 Fur family ferric uptake regulator YP_004657080.1 4169059 R 761193 CDS YP_004657081.1 338213026 10872125 complement(4169660..4171921) 1 NC_015703.1 PFAM: HD domain; ACT domain; TGS domain; Region found in RelA / SpoT proteins; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family; (p)ppGpp synthetase I SpoT/RelA 4171921 10872125 Runsl_3588 Runella slithyformis DSM 19594 (p)ppGpp synthetase I SpoT/RelA YP_004657081.1 4169660 R 761193 CDS YP_004657082.1 338213027 10872127 4172406..4173746 1 NC_015703.1 PFAM: Bacterial trigger factor protein (TF); TIGRFAM: trigger factor; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: ppn:Palpr_0445 transcriptional regulator, crp/fnr family; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; trigger factor 4173746 10872127 Runsl_3589 Runella slithyformis DSM 19594 trigger factor YP_004657082.1 4172406 D 761193 CDS YP_004657083.1 338213028 10872128 4173840..4174409 1 NC_015703.1 PFAM: Cyclic nucleotide-binding domain; Crp/Fnr family transcriptional regulator 4174409 10872128 Runsl_3590 Runella slithyformis DSM 19594 Crp/Fnr family transcriptional regulator YP_004657083.1 4173840 D 761193 CDS YP_004657084.1 338213029 10872129 4174496..4175506 1 NC_015703.1 hypothetical protein 4175506 10872129 Runsl_3591 Runella slithyformis DSM 19594 hypothetical protein YP_004657084.1 4174496 D 761193 CDS YP_004657085.1 338213030 10872130 4175597..4175974 1 NC_015703.1 KEGG: sli:Slin_2034 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4175974 10872130 Runsl_3592 Runella slithyformis DSM 19594 hypothetical protein YP_004657085.1 4175597 D 761193 CDS YP_004657086.1 338213031 10872131 4175991..4176413 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 4176413 10872131 Runsl_3593 Runella slithyformis DSM 19594 hypothetical protein YP_004657086.1 4175991 D 761193 CDS YP_004657087.1 338213032 10872133 complement(4177425..4178039) 1 NC_015703.1 PFAM: O-methyltransferase; COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: caa:Caka_0891 esterase; PFAM: esterase; SPTR: esterase; type 11 methyltransferase 4178039 10872133 Runsl_3595 Runella slithyformis DSM 19594 type 11 methyltransferase YP_004657087.1 4177425 R 761193 CDS YP_004657088.1 338213033 10872134 complement(4178121..4178912) 1 NC_015703.1 PFAM: esterase; COGs: COG1062 Zn-dependent alcohol dehydrogenase class III; InterPro IPR013154:IPR013149; KEGG: cao:Celal_3017 alcohol dehydrogenase GroES domain protein; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; SPTR: MS123, alcohol dehydrogenase; esterase 4178912 10872134 Runsl_3596 Runella slithyformis DSM 19594 esterase YP_004657088.1 4178121 R 761193 CDS YP_004657089.1 338213034 10872135 complement(4178941..4180047) 1 NC_015703.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; KEGG: mtt:Ftrac_1988 hypothetical protein; SPTR: Lipoprotein; molecular chaperone GroES 4180047 10872135 Runsl_3597 Runella slithyformis DSM 19594 molecular chaperone GroES YP_004657089.1 4178941 R 761193 CDS YP_004657090.1 338213035 10872136 complement(4180127..4180909) 1 NC_015703.1 COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: dfe:Dfer_4990 UspA domain protein; PFAM: UspA; SPTR: UspA domain protein; hypothetical protein 4180909 10872136 Runsl_3598 Runella slithyformis DSM 19594 hypothetical protein YP_004657090.1 4180127 R 761193 CDS YP_004657091.1 338213036 10872137 4181050..4181892 1 NC_015703.1 PFAM: Universal stress protein family; Prodigal; manually curated; UspA domain-containing protein 4181892 10872137 Runsl_3599 Runella slithyformis DSM 19594 UspA domain-containing protein YP_004657091.1 4181050 D 761193 CDS YP_004657092.1 338213037 10872139 complement(4183235..4185079) 1 NC_015703.1 PFAM: BlaR1 peptidase M56; COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: sli:Slin_5968 CopY family transcriptional regulator; PFAM: Penicillinase repressor; SPTR: Transcriptional repressor, CopY family; peptidase M56 BlaR1 4185079 10872139 Runsl_3601 Runella slithyformis DSM 19594 peptidase M56 BlaR1 YP_004657092.1 4183235 R 761193 CDS YP_004657093.1 338213038 10872140 complement(4185193..4185552) 1 NC_015703.1 PFAM: Penicillinase repressor; COGs: COG0412 Dienelactone hydrolase; InterPro IPR002925; KEGG: sli:Slin_5500 dienelactone hydrolase; PFAM: Dienelactone hydrolase; SPTR: Dienelactone hydrolase; CopY family transcriptional repressor 4185552 10872140 Runsl_3602 Runella slithyformis DSM 19594 CopY family transcriptional repressor YP_004657093.1 4185193 R 761193 CDS YP_004657094.1 338213039 10872141 4185590..4186579 1 NC_015703.1 PFAM: Dienelactone hydrolase; COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component; InterPro IPR003439:IPR003593:IPR010230; KEGG: dfe:Dfer_5778 FeS assembly ATPase SufC; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: FeS assembly ATPase SufC; TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; dienelactone hydrolase 4186579 10872141 Runsl_3603 Runella slithyformis DSM 19594 dienelactone hydrolase YP_004657094.1 4185590 D 761193 CDS YP_004657095.1 338213040 10872142 4186944..4187699 1 NC_015703.1 PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC; COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825:IPR011542; KEGG: sli:Slin_0174 FeS assembly protein SufD; PFAM: SUF system FeS cluster assembly, SufBD; SPTR: FeS assembly protein SufD; TIGRFAM: SUF system FeS cluster assembly, SufD; FeS assembly ATPase SufC 4187699 10872142 Runsl_3604 Runella slithyformis DSM 19594 FeS assembly ATPase SufC YP_004657095.1 4186944 D 761193 CDS YP_004657096.1 338213041 10872143 4187776..4189095 1 NC_015703.1 PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD; KEGG: geb:GM18_2404 HEPN domain-containing protein; SPTR: HEPN domain protein; FeS assembly protein SufD 4189095 10872143 Runsl_3605 Runella slithyformis DSM 19594 FeS assembly protein SufD YP_004657096.1 4187776 D 761193 CDS YP_004657097.1 338213042 10872144 4189113..4189571 1 NC_015703.1 HEPN domain-containing protein 4189571 10872144 Runsl_3606 Runella slithyformis DSM 19594 HEPN domain-containing protein YP_004657097.1 4189113 D 761193 CDS YP_004657098.1 338213043 10872145 4189553..4189858 1 NC_015703.1 COGs: COG1052 Lactate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140; KEGG: pmx:PERMA_1233 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; PRIAM: Phosphoglycerate dehydrogenase; SPTR: Glycerate dehydrogenase (NADH-dependent hydroxypyruvatereductase) (Hpr) (Gdh) (Hydroxypyruvate dehydrogenase) (Glyoxylatereductase) (Hpr-a); hypothetical protein 4189858 10872145 Runsl_3607 Runella slithyformis DSM 19594 hypothetical protein YP_004657098.1 4189553 D 761193 CDS YP_004657099.1 338213044 10872146 4189977..4190912 1 NC_015703.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; KEGG: dfe:Dfer_4970 hypothetical protein; SPTR: uncharacterized protein; phosphoglycerate dehydrogenase 4190912 10872146 Runsl_3608 Runella slithyformis DSM 19594 phosphoglycerate dehydrogenase YP_004657099.1 4189977 D 761193 CDS YP_004657100.1 338213045 10872147 complement(4190962..4191336) 1 NC_015703.1 hypothetical protein 4191336 10872147 Runsl_3609 Runella slithyformis DSM 19594 hypothetical protein YP_004657100.1 4190962 R 761193 CDS YP_004657101.1 338213046 10872148 complement(4191583..4192017) 1 NC_015703.1 COGs: COG1554 Trehalose and maltose hydrolase (possible phosphorylase); InterPro IPR005196:IPR005195:IPR005194; KEGG: dfe:Dfer_2756 maltose phosphorylase; PFAM: Glycoside hydrolase 65, central catalytic; Glycoside hydrolase 65, N-terminal; Glycoside hydrolase, family 65, C-terminal; PRIAM: Kojibiose phosphorylase; SPTR: Kojibiose phosphorylase; hypothetical protein 4192017 10872148 Runsl_3610 Runella slithyformis DSM 19594 hypothetical protein YP_004657101.1 4191583 R 761193 CDS YP_004657102.1 338213047 10872149 4192788..4195124 1 NC_015703.1 PFAM: Glycosyl hydrolase 65, C-terminal domain; Glycosyl hydrolase 65, N-terminal domain; Glycosyl hydrolase 65 central catalytic domain; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: pru:PRU_2908 group 2 family glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase, group 2 family; Kojibiose phosphorylase 4195124 10872149 Runsl_3611 Runella slithyformis DSM 19594 Kojibiose phosphorylase YP_004657102.1 4192788 D 761193 CDS YP_004657103.1 338213048 10872150 4195314..4196213 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG0657 Esterase/lipase; KEGG: sli:Slin_4918 esterase/lipase precursor; SPTR: esterase/lipase; family 2 glycosyl transferase 4196213 10872150 Runsl_3612 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004657103.1 4195314 D 761193 CDS YP_004657104.1 338213049 10872151 complement(4196241..4197191) 1 NC_015703.1 PFAM: Prolyl oligopeptidase; COGs: COG3751 proline hydroxylase; InterPro IPR005123:IPR006620; KEGG: sli:Slin_4910 2OG-Fe(II) oxygenase; PFAM: Oxoglutarate/iron-dependent oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; SPTR: 2OG-Fe(II) oxygenase; manually curated; esterase 4197191 10872151 Runsl_3613 Runella slithyformis DSM 19594 esterase YP_004657104.1 4196241 R 761193 CDS YP_004657105.1 338213050 10872152 complement(4197288..4197926) 1 NC_015703.1 COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: cpi:Cpin_7134 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; 2OG-Fe(II) oxygenase 4197926 10872152 Runsl_3614 Runella slithyformis DSM 19594 2OG-Fe(II) oxygenase YP_004657105.1 4197288 R 761193 CDS YP_004657106.1 338213051 10872153 4198143..4198670 1 NC_015703.1 COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; KEGG: dfe:Dfer_1067 peptidylprolyl isomerase (FKBP-type peptidyl-prolyl cis-trans isomerase); SPTR: Peptidyl-prolyl cis-trans isomerase; N-acetyltransferase GCN5 4198670 10872153 Runsl_3615 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004657106.1 4198143 D 761193 CDS YP_004657107.1 338213052 10872154 4198715..4199227 1 NC_015703.1 PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; COGs: COG2957 Peptidylarginine deiminase; InterPro IPR007466; KEGG: sli:Slin_0810 agmatine deiminase; PFAM: Peptidyl-arginine deiminase, Porphyromonas-type; PRIAM: Agmatine deiminase; SPTR: Agmatine deiminase; FKBP-type peptidylprolyl isomerase 4199227 10872154 Runsl_3616 Runella slithyformis DSM 19594 FKBP-type peptidylprolyl isomerase YP_004657107.1 4198715 D 761193 CDS YP_004657108.1 338213053 10872155 complement(4199381..4200505) 1 NC_015703.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; InterPro IPR014865; KEGG: zpr:ZPR_1806 hypothetical protein; SPTR: uncharacterized protein; Agmatine deiminase 4200505 10872155 Runsl_3617 Runella slithyformis DSM 19594 Agmatine deiminase YP_004657108.1 4199381 R 761193 CDS YP_004657109.1 338213054 10872156 4200567..4201103 1 NC_015703.1 PFAM: DsrE/DsrF-like family; hypothetical protein 4201103 10872156 Runsl_3618 Runella slithyformis DSM 19594 hypothetical protein YP_004657109.1 4200567 D 761193 CDS YP_004657110.1 338213055 10872157 4201554..4201796 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 4201796 10872157 Runsl_3619 Runella slithyformis DSM 19594 hypothetical protein YP_004657110.1 4201554 D 761193 CDS YP_004657111.1 338213056 10872159 4202287..4203405 1 NC_015703.1 TIGRFAM: DNA polymerase III, delta' subunit; InterPro IPR011519; KEGG: dfe:Dfer_4738 ASPIC/UnbV domain protein; PFAM: ASPIC/UnbV; SPTR: ASPIC/UnbV domain protein; DNA polymerase III gamma/tau subunits-like protein 4203405 10872159 Runsl_3621 Runella slithyformis DSM 19594 DNA polymerase III gamma/tau subunits-like protein YP_004657111.1 4202287 D 761193 CDS YP_004657112.1 338213057 10872160 complement(4203466..4206828) 1 NC_015703.1 PFAM: ASPIC and UnbV; KEGG: sli:Slin_0911 hypothetical protein; SPTR: uncharacterized protein; ASPIC/UnbV domain-containing protein 4206828 10872160 Runsl_3622 Runella slithyformis DSM 19594 ASPIC/UnbV domain-containing protein YP_004657112.1 4203466 R 761193 CDS YP_004657113.1 338213058 10872161 complement(4206950..4207657) 1 NC_015703.1 InterPro IPR012944; KEGG: lby:Lbys_2780 ragb/susd domain protein; PFAM: RagB/SusD; SPTR: outer membrane protein probably involved in nutrient binding; hypothetical protein 4207657 10872161 Runsl_3623 Runella slithyformis DSM 19594 hypothetical protein YP_004657113.1 4206950 R 761193 CDS YP_004657114.1 338213059 10872162 complement(4207821..4209680) 1 NC_015703.1 PFAM: SusD family; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: lby:Lbys_2779 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: Membrane protein; RagB/SusD domain-containing protein 4209680 10872162 Runsl_3624 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004657114.1 4207821 R 761193 CDS YP_004657115.1 338213060 10872163 complement(4209699..4212815) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG4067 conserved hypothetical protein; InterPro IPR008503; KEGG: sli:Slin_6088 hypothetical protein; PFAM: Protein of unknown function DUF785; SPTR: uncharacterized protein; TonB-dependent receptor plug 4212815 10872163 Runsl_3625 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004657115.1 4209699 R 761193 CDS YP_004657116.1 338213061 10872164 4213006..4213446 1 NC_015703.1 PFAM: Protein of unknown function (DUF785); COGs: COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); InterPro IPR013651:IPR004666; KEGG: dfe:Dfer_3274 alpha-L-glutamate ligase, RimK family; PFAM: ATP-grasp fold, RimK-type; SPTR: Alpha-L-glutamate ligase, RimK family; TIGRFAM: S6 modification enzyme RimK; hypothetical protein 4213446 10872164 Runsl_3626 Runella slithyformis DSM 19594 hypothetical protein YP_004657116.1 4213006 D 761193 CDS YP_004657117.1 338213062 10872165 4213581..4214483 1 NC_015703.1 PFAM: RimK-like ATP-grasp domain; TIGRFAM: alpha-L-glutamate ligases, RimK family; COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: dfe:Dfer_5114 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; RimK family alpha-L-glutamate ligase 4214483 10872165 Runsl_3627 Runella slithyformis DSM 19594 RimK family alpha-L-glutamate ligase YP_004657117.1 4213581 D 761193 CDS YP_004657118.1 338213063 10872166 4214603..4215310 1 NC_015703.1 PFAM: NUDIX domain; NUDIX hydrolase 4215310 10872166 Runsl_3628 Runella slithyformis DSM 19594 NUDIX hydrolase YP_004657118.1 4214603 D 761193 CDS YP_004657119.1 338213064 10872167 4215981..4216091 1 NC_015703.1 InterPro IPR012910:IPR000531; KEGG: sli:Slin_3031 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein 4216091 10872167 Runsl_3629 Runella slithyformis DSM 19594 hypothetical protein YP_004657119.1 4215981 D 761193 CDS YP_004657120.1 338213065 10872168 4216193..4219264 1 NC_015703.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: sli:Slin_3030 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 4219264 10872168 Runsl_3630 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004657120.1 4216193 D 761193 CDS YP_004657121.1 338213066 10872169 4219318..4220850 1 NC_015703.1 InterPro IPR013517:IPR011519; KEGG: sli:Slin_3029 ASPIC/UnbV domain protein; PFAM: ASPIC/UnbV; FG-GAP; SPTR: ASPIC/UnbV domain protein; hypothetical protein 4220850 10872169 Runsl_3631 Runella slithyformis DSM 19594 hypothetical protein YP_004657121.1 4219318 D 761193 CDS YP_004657122.1 338213067 10872170 4220949..4224215 1 NC_015703.1 PFAM: ASPIC and UnbV; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR013096:IPR000005:IPR018060; KEGG: sli:Slin_4043 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; Cupin 2, conserved barrel; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; ASPIC/UnbV domain-containing protein 4224215 10872170 Runsl_3632 Runella slithyformis DSM 19594 ASPIC/UnbV domain-containing protein YP_004657122.1 4220949 D 761193 CDS YP_004657123.1 338213068 10872171 complement(4224187..4225101) 1 NC_015703.1 PFAM: Cupin domain; InterPro IPR012307; KEGG: pjd:Pjdr2_3667 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: uncharacterized protein; AraC family transcriptional regulator 4225101 10872171 Runsl_3633 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004657123.1 4224187 R 761193 CDS YP_004657124.1 338213069 10872172 4225247..4226020 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: ttr:Tter_0136 WD40 domain protein beta propeller; PFAM: WD40-like Beta Propeller; SPTR: WD40-like Beta Propeller; xylose isomerase domain-containing protein 4226020 10872172 Runsl_3634 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004657124.1 4225247 D 761193 CDS YP_004657125.1 338213070 10872173 4226028..4226963 1 NC_015703.1 PFAM: WD40-like Beta Propeller Repeat; InterPro IPR004455; KEGG: smd:Smed_3771 NADP oxidoreductase coenzyme F420-dependent; PFAM: NADP oxidoreductase, coenzyme F420-dependent; SPTR: NADP oxidoreductase coenzyme F420-dependent; hypothetical protein 4226963 10872173 Runsl_3635 Runella slithyformis DSM 19594 hypothetical protein YP_004657125.1 4226028 D 761193 CDS YP_004657126.1 338213071 10872174 4226985..4227824 1 NC_015703.1 PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase; KEGG: rrs:RoseRS_1804 hypothetical protein; SPTR: uncharacterized protein; coenzyme F420-dependent NADP oxidoreductase 4227824 10872174 Runsl_3636 Runella slithyformis DSM 19594 coenzyme F420-dependent NADP oxidoreductase YP_004657126.1 4226985 D 761193 CDS YP_004657127.1 338213072 10872175 4227846..4229294 1 NC_015703.1 KEGG: sli:Slin_6336 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4229294 10872175 Runsl_3637 Runella slithyformis DSM 19594 hypothetical protein YP_004657127.1 4227846 D 761193 CDS YP_004657128.1 338213073 10872176 4229319..4230710 1 NC_015703.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: ttr:Tter_1997 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein; hypothetical protein 4230710 10872176 Runsl_3638 Runella slithyformis DSM 19594 hypothetical protein YP_004657128.1 4229319 D 761193 CDS YP_004657129.1 338213074 10872177 4230707..4231738 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: dtu:Dtur_0411 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Monosaccharide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; oxidoreductase domain-containing protein 4231738 10872177 Runsl_3639 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004657129.1 4230707 D 761193 CDS YP_004657130.1 338213075 10872178 4231726..4233210 1 NC_015703.1 PFAM: ABC transporter; COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: aac:Aaci_2903 inner-membrane translocator; PFAM: Bacterial inner-membrane translocator; SPTR: ABC transporter, membrane spanning protein (Ribose); monosaccharide-transporting ATPase 4233210 10872178 Runsl_3640 Runella slithyformis DSM 19594 monosaccharide-transporting ATPase YP_004657130.1 4231726 D 761193 CDS YP_004657131.1 338213076 10872179 4233370..4235358 1 NC_015703.1 PFAM: family; Branched-chain amino acid transport system / permease component; ABC transporter permease 4235358 10872179 Runsl_3641 Runella slithyformis DSM 19594 ABC transporter permease YP_004657131.1 4233370 D 761193 CDS YP_004657132.1 338213077 10872180 complement(4235224..4235514) 1 NC_015703.1 COGs: COG4124 Beta-mannanase; InterPro IPR000805; KEGG: lby:Lbys_3427 mannan endo-1,4-beta-mannosidase; PFAM: Glycoside hydrolase, family 26; PRIAM: Mannan endo-1,4-beta-mannosidase; SPTR: Mannan endo-1,4-beta-mannosidase; hypothetical protein 4235514 10872180 Runsl_3642 Runella slithyformis DSM 19594 hypothetical protein YP_004657132.1 4235224 R 761193 CDS YP_004657133.1 338213078 10872181 4235595..4236713 1 NC_015703.1 PFAM: Glycosyl hydrolase 26; COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: lby:Lbys_3428 na+/solute symporter; PFAM: Sodium/solute symporter; SPTR: Na+/solute symporter; mannan endo-1,4-beta-mannosidase 4236713 10872181 Runsl_3643 Runella slithyformis DSM 19594 mannan endo-1,4-beta-mannosidase YP_004657133.1 4235595 D 761193 CDS YP_004657134.1 338213079 10872182 4236749..4238578 1 NC_015703.1 PFAM: Sodium:solute symporter family; COGs: COG2152 glycosylase; InterPro IPR007184; KEGG: psn:Pedsa_2973 glycosidase related protein; PFAM: Glycosidase, PH1107-related; SPTR: uncharacterized protein; Na+/solute symporter 4238578 10872182 Runsl_3644 Runella slithyformis DSM 19594 Na+/solute symporter YP_004657134.1 4236749 D 761193 CDS YP_004657135.1 338213080 10872183 4238646..4239833 1 NC_015703.1 PFAM: Domain of unknown function (DUF377); COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: sli:Slin_1327 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; glycosidase-like protein 4239833 10872183 Runsl_3645 Runella slithyformis DSM 19594 glycosidase-like protein YP_004657135.1 4238646 D 761193 CDS YP_004657136.1 338213081 10872184 complement(4239881..4240552) 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); COGs: COG2942 N-acyl-D-glucosamine 2-epimerase; InterPro IPR010819; KEGG: phe:Phep_3983 N-acylglucosamine 2-epimerase; PFAM: N-acylglucosamine 2-epimerase; SPTR: N-acylglucosamine 2-epimerase; hypothetical protein 4240552 10872184 Runsl_3646 Runella slithyformis DSM 19594 hypothetical protein YP_004657136.1 4239881 R 761193 CDS YP_004657137.1 338213082 10872185 4240610..4241794 1 NC_015703.1 PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); COGs: COG2730 Endoglucanase; InterPro IPR001547; KEGG: rmr:Rmar_0025 glycoside hydrolase 5; PFAM: Glycoside hydrolase, family 5; SPTR: Glycoside hydrolase 5; N-acylglucosamine 2-epimerase 4241794 10872185 Runsl_3647 Runella slithyformis DSM 19594 N-acylglucosamine 2-epimerase YP_004657137.1 4240610 D 761193 CDS YP_004657138.1 338213083 10872186 4241807..4242820 1 NC_015703.1 PFAM: Cellulase (glycosyl hydrolase 5); InterPro IPR005181; KEGG: dfe:Dfer_0312 protein of unknown function DUF303 acetylesterase PFAM: Protein of unknown function DUF303, acetylesterase SPTR: uncharacterized protein; glycoside hydrolase 4242820 10872186 Runsl_3648 Runella slithyformis DSM 19594 glycoside hydrolase YP_004657138.1 4241807 D 761193 CDS YP_004657139.1 338213084 10872187 4242906..4244861 1 NC_015703.1 PFAM: Domain of unknown function (DUF303); COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: lby:Lbys_3530 aldo/keto reductase; PFAM: Aldo/keto reductase; SPTR: Aldo/keto reductase; hypothetical protein 4244861 10872187 Runsl_3649 Runella slithyformis DSM 19594 hypothetical protein YP_004657139.1 4242906 D 761193 CDS YP_004657140.1 338213085 10872188 4245033..4246022 1 NC_015703.1 PFAM: Aldo/keto reductase; COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: chu:CHU_1199 mechanosensitive ion channel component; PFAM: Mechanosensitive ion channel MscS; SPTR: Mechanosensitive ion channel component; aldo/keto reductase 4246022 10872188 Runsl_3650 Runella slithyformis DSM 19594 aldo/keto reductase YP_004657140.1 4245033 D 761193 CDS YP_004657141.1 338213086 10872189 4246333..4247526 1 NC_015703.1 PFAM: Mechanosensitive ion channel; COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR002529; KEGG: sli:Slin_0979 fumarylacetoacetate hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like; PRIAM: 5-carboxymethyl-2-hydroxymuconate Delta-isomerase; SPTR: Fumarylacetoacetate (FAA) hydrolase; mechanosensitive ion channel protein MscS 4247526 10872189 Runsl_3651 Runella slithyformis DSM 19594 mechanosensitive ion channel protein MscS YP_004657141.1 4246333 D 761193 CDS YP_004657142.1 338213087 10872190 4247590..4248201 1 NC_015703.1 PFAM: Fumarylacetoacetate (FAA) hydrolase; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: dfe:Dfer_2938 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23; manually curated; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 4248201 10872190 Runsl_3652 Runella slithyformis DSM 19594 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_004657142.1 4247590 D 761193 CDS YP_004657143.1 338213088 10872191 4248302..4250308 1 NC_015703.1 PFAM: Peptidase M23; COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: mtt:Ftrac_0980 peroxiredoxin; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PRIAM: Peroxiredoxin; SPTR: Peroxiredoxin; manually curated; peptidase M23 4250308 10872191 Runsl_3653 Runella slithyformis DSM 19594 peptidase M23 YP_004657143.1 4248302 D 761193 CDS YP_004657144.1 338213089 10872192 4250241..4250696 1 NC_015703.1 PFAM: AhpC/TSA family; InterPro IPR008815; KEGG: psn:Pedsa_2595 hypothetical protein; PFAM: 23S rRNA-associated protein; SPTR: uncharacterized protein; peroxiredoxin 4250696 10872192 Runsl_3654 Runella slithyformis DSM 19594 peroxiredoxin YP_004657144.1 4250241 D 761193 CDS YP_004657145.1 338213090 10872193 4250778..4251131 1 NC_015703.1 PFAM: S23 ribosomal protein; COGs: COG3959 Transketolase N-terminal subunit; InterPro IPR005474; KEGG: lby:Lbys_1197 transketolase domaiN-containing protein; PFAM: Transketolase, N-terminal; PRIAM: Transketolase; SPTR: Transketolase domain-containing protein; S23 ribosomal protein 4251131 10872193 Runsl_3655 Runella slithyformis DSM 19594 S23 ribosomal protein YP_004657145.1 4250778 D 761193 CDS YP_004657146.1 338213091 10872194 4251135..4252025 1 NC_015703.1 PFAM: Transketolase, thiamine diphosphate binding domain; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: psn:Pedsa_2729 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; transketolase 4252025 10872194 Runsl_3656 Runella slithyformis DSM 19594 transketolase YP_004657146.1 4251135 D 761193 CDS YP_004657147.1 338213092 10872195 4252038..4252628 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); COGs: COG4637 ATPase; InterPro IPR003395; KEGG: aap:NT05HA_1643 RecF/RecN/SMC N domain; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: uncharacterized protein; hypothetical protein 4252628 10872195 Runsl_3657 Runella slithyformis DSM 19594 hypothetical protein YP_004657147.1 4252038 D 761193 CDS YP_004657148.1 338213093 10872196 4252645..4253637 1 NC_015703.1 PFAM: RecF/RecN/SMC N terminal domain; KEGG: aap:NT05HA_1642 hypothetical protein; SPTR: uncharacterized protein; SMC domain-containing protein 4253637 10872196 Runsl_3658 Runella slithyformis DSM 19594 SMC domain-containing protein YP_004657148.1 4252645 D 761193 CDS YP_004657149.1 338213094 10872197 4253631..4254233 1 NC_015703.1 COGs: COG3958 Transketolase C-terminal subunit; InterPro IPR005475:IPR005476; KEGG: dfe:Dfer_2935 transketolase central region; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: Transketolase; SPTR: Transketolase central region; hypothetical protein 4254233 10872197 Runsl_3659 Runella slithyformis DSM 19594 hypothetical protein YP_004657149.1 4253631 D 761193 CDS YP_004657150.1 338213095 10872198 4254255..4255211 1 NC_015703.1 PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_0974 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; transketolase 4255211 10872198 Runsl_3660 Runella slithyformis DSM 19594 transketolase YP_004657150.1 4254255 D 761193 CDS YP_004657151.1 338213096 10872199 4255272..4255829 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: dfe:Dfer_2933 hypothetical protein; SPTR: uncharacterized protein; ECF subfamily RNA polymerase sigma-24 subunit 4255829 10872199 Runsl_3661 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004657151.1 4255272 D 761193 CDS YP_004657152.1 338213097 10872200 4255894..4256331 1 NC_015703.1 KEGG: dfe:Dfer_2932 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4256331 10872200 Runsl_3662 Runella slithyformis DSM 19594 hypothetical protein YP_004657152.1 4255894 D 761193 CDS YP_004657153.1 338213098 10872201 4256366..4256791 1 NC_015703.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: sli:Slin_0503 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: Response regulator receiver protein; hypothetical protein 4256791 10872201 Runsl_3663 Runella slithyformis DSM 19594 hypothetical protein YP_004657153.1 4256366 D 761193 CDS YP_004657154.1 338213099 10872202 complement(4256861..4257211) 1 NC_015703.1 PFAM: LytTr DNA-binding domain; COGs: COG2176 DNA polymerase III alpha subunit (gram-positive type); InterPro IPR013520:IPR006055:IPR006054; KEGG: dfe:Dfer_5151 DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; PRIAM: DNA-directed DNA polymerase; SMART: Exonuclease; SPTR: DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; response regulator receiver protein 4257211 10872202 Runsl_3664 Runella slithyformis DSM 19594 response regulator receiver protein YP_004657154.1 4256861 R 761193 CDS YP_004657155.1 338213100 10872203 4257241..4257852 1 NC_015703.1 PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family; COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: shg:Sph21_3655 regulatory protein TetR; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: TetR family transcriptional regulator; DNA polymerase III subunit epsilon 4257852 10872203 Runsl_3665 Runella slithyformis DSM 19594 DNA polymerase III subunit epsilon YP_004657155.1 4257241 D 761193 CDS YP_004657156.1 338213101 10872204 4257973..4258515 1 NC_015703.1 PFAM: Bacterial regulatory proteins, tetR family; COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: dfe:Dfer_2793 Zn-dependent hydrolase of the beta-lactamase fold-like protein; SPTR: Outer membrane protein; TetR family transcriptional regulator 4258515 10872204 Runsl_3666 Runella slithyformis DSM 19594 TetR family transcriptional regulator YP_004657156.1 4257973 D 761193 CDS YP_004657157.1 338213102 10872205 4258597..4259709 1 NC_015703.1 COGs: COG0694 Thioredoxin-like protein and domains; InterPro IPR001075; KEGG: sli:Slin_1109 nitrogen-fixing NifU domain protein; PFAM: NIF system FeS cluster assembly, NifU, C-terminal; SPTR: Nitrogen-fixing NifU domain protein; beta-lactamase fold-like Zn-dependent hydrolase 4259709 10872205 Runsl_3667 Runella slithyformis DSM 19594 beta-lactamase fold-like Zn-dependent hydrolase YP_004657157.1 4258597 D 761193 CDS YP_004657158.1 338213103 10872206 complement(4259755..4260018) 1 NC_015703.1 PFAM: NifU-like domain; COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR002744:IPR019591; KEGG: dfe:Dfer_4935 protein of unknown function DUF59; PFAM: ATPase-like, ParA/MinD; Protein of unknown function DUF59; SPTR: uncharacterized protein; nitrogen-fixing NifU domain-containing protein 4260018 10872206 Runsl_3668 Runella slithyformis DSM 19594 nitrogen-fixing NifU domain-containing protein YP_004657158.1 4259755 R 761193 CDS YP_004657159.1 338213104 10872207 complement(4260097..4261203) 1 NC_015703.1 PFAM: ParA/MinD ATPase like; Domain of unknown function DUF59; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: sli:Slin_2022 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; chromosome partitioning protein ParA 4261203 10872207 Runsl_3669 Runella slithyformis DSM 19594 chromosome partitioning protein ParA YP_004657159.1 4260097 R 761193 CDS YP_004657160.1 338213105 10872208 complement(4261347..4262687) 1 NC_015703.1 PFAM: Major Facilitator Superfamily; major facilitator superfamily protein 4262687 10872208 Runsl_3670 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004657160.1 4261347 R 761193 CDS YP_004657161.1 338213106 10872209 complement(4262914..4263198) 1 NC_015703.1 COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_2776 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; hypothetical protein 4263198 10872209 Runsl_3671 Runella slithyformis DSM 19594 hypothetical protein YP_004657161.1 4262914 R 761193 CDS YP_004657162.1 338213107 10872210 4263313..4264389 1 NC_015703.1 PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_2775 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; signal transduction histidine kinase 4264389 10872210 Runsl_3672 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004657162.1 4263313 D 761193 CDS YP_004657163.1 338213108 10872211 4264423..4265202 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; KEGG: dfe:Dfer_2941 hypothetical protein; SPTR: uncharacterized protein; LytTR family two component transcriptional regulator 4265202 10872211 Runsl_3673 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004657163.1 4264423 D 761193 CDS YP_004657164.1 338213109 10872212 4265369..4266595 1 NC_015703.1 KEGG: dfe:Dfer_2942 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4266595 10872212 Runsl_3674 Runella slithyformis DSM 19594 hypothetical protein YP_004657164.1 4265369 D 761193 CDS YP_004657165.1 338213110 10872213 4266711..4268372 1 NC_015703.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: dfe:Dfer_3119 beta-lactamase domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Beta-lactamase domain protein; hypothetical protein 4268372 10872213 Runsl_3675 Runella slithyformis DSM 19594 hypothetical protein YP_004657165.1 4266711 D 761193 CDS YP_004657166.1 338213111 10872214 4268437..4269855 1 NC_015703.1 PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain; rhodanese-like protein 4269855 10872214 Runsl_3676 Runella slithyformis DSM 19594 rhodanese-like protein YP_004657166.1 4268437 D 761193 CDS YP_004657167.1 338213112 10872215 4269891..4270355 1 NC_015703.1 COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: cao:Celal_2001 transcriptional repressor, copy family; PFAM: Penicillinase repressor; SPTR: Penicillinase repressor; hypothetical protein 4270355 10872215 Runsl_3677 Runella slithyformis DSM 19594 hypothetical protein YP_004657167.1 4269891 D 761193 CDS YP_004657168.1 338213113 10872216 4270709..4271080 1 NC_015703.1 PFAM: Penicillinase repressor; COGs: COG4219 Antirepressor regulating drug resistance predicted signal transduction N-terminal membrane component; InterPro IPR008756; KEGG: sli:Slin_3430 peptidase M56 BlaR1; PFAM: Peptidase M56, BlaR1; SPTR: Peptidase M56 BlaR1; CopY family transcriptional repressor 4271080 10872216 Runsl_3678 Runella slithyformis DSM 19594 CopY family transcriptional repressor YP_004657168.1 4270709 D 761193 CDS YP_004657169.1 338213114 10872217 4271077..4272525 1 NC_015703.1 PFAM: BlaR1 peptidase M56; peptidase M56 BlaR1 4272525 10872217 Runsl_3679 Runella slithyformis DSM 19594 peptidase M56 BlaR1 YP_004657169.1 4271077 D 761193 CDS YP_004657170.1 338213115 10872218 complement(4272648..4272806) 1 NC_015703.1 KEGG: dfe:Dfer_1441 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4272806 10872218 Runsl_3680 Runella slithyformis DSM 19594 hypothetical protein YP_004657170.1 4272648 R 761193 CDS YP_004657171.1 338213116 10872219 complement(4272841..4273302) 1 NC_015703.1 COGs: COG0495 Leucyl-tRNA synthetase; InterPro IPR002300:IPR015413:IPR013155:IPR002302; KEGG: sli:Slin_1712 leucyl-tRNA synthetase; PFAM: Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; Aminoacyl-tRNA synthetase, class Ia; Aminoacyl-tRNA synthetase, class I (M); PRIAM: Leucine--tRNA ligase; SPTR: Leucyl-tRNA synthetase; TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; hypothetical protein 4273302 10872219 Runsl_3681 Runella slithyformis DSM 19594 hypothetical protein YP_004657171.1 4272841 R 761193 CDS YP_004657172.1 338213117 10872220 complement(4273369..4276197) 1 NC_015703.1 PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: sli:Slin_0341 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; leucyl-tRNA synthetase 4276197 10872220 Runsl_3682 Runella slithyformis DSM 19594 leucyl-tRNA synthetase YP_004657172.1 4273369 R 761193 CDS YP_004657173.1 338213118 10872221 4276379..4276966 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); COGs: COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase; InterPro IPR003329:IPR004528; KEGG: sli:Slin_2800 3-deoxy-D-manno-octulosonatecytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase; PRIAM: 3-deoxy-manno-octulosonate cytidylyltransferase; SPTR: 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; hypothetical protein 4276966 10872221 Runsl_3683 Runella slithyformis DSM 19594 hypothetical protein YP_004657173.1 4276379 D 761193 CDS YP_004657174.1 338213119 10872222 4277130..4277918 1 NC_015703.1 PFAM: Cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR002523:IPR004488; KEGG: sli:Slin_2267 magnesium and cobalt transporter CorA; PFAM: Mg2+ transporter protein, CorA-like; SPTR: Magnesium and cobalt transport protein CorA; TIGRFAM: Magnesium/cobalt transport protein CorA; 3-deoxy-manno-octulosonate cytidylyltransferase 4277918 10872222 Runsl_3684 Runella slithyformis DSM 19594 3-deoxy-manno-octulosonate cytidylyltransferase YP_004657174.1 4277130 D 761193 CDS YP_004657175.1 338213120 10872223 4277970..4279034 1 NC_015703.1 PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA); COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR013200:IPR000150:IPR006379; KEGG: dfe:Dfer_2852 Cof-like hydrolase; PFAM: HAD superfamily hydrolase-like, type 3; SPTR: Cof-like hydrolase; TIGRFAM: Cof protein; HAD-superfamily hydrolase, subfamily IIB; magnesium and cobalt transport protein CorA 4279034 10872223 Runsl_3685 Runella slithyformis DSM 19594 magnesium and cobalt transport protein CorA YP_004657175.1 4277970 D 761193 CDS YP_004657176.1 338213121 10872224 4279082..4279903 1 NC_015703.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB; COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: mtt:Ftrac_2184 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; cof family hydrolase 4279903 10872224 Runsl_3686 Runella slithyformis DSM 19594 cof family hydrolase YP_004657176.1 4279082 D 761193 CDS YP_004657177.1 338213122 10872225 complement(4279909..4281267) 1 NC_015703.1 PFAM: Acyltransferase; COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: sli:Slin_0741 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: Similar to Q4C2F1_CROWT Hypothetical protein; phospholipid/glycerol acyltransferase 4281267 10872225 Runsl_3687 Runella slithyformis DSM 19594 phospholipid/glycerol acyltransferase YP_004657177.1 4279909 R 761193 CDS YP_004657178.1 338213123 10872226 4281338..4281922 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); KEGG: gym:GYMC10_2811 YvaD; SPTR: YvaD; hypothetical protein 4281922 10872226 Runsl_3688 Runella slithyformis DSM 19594 hypothetical protein YP_004657178.1 4281338 D 761193 CDS YP_004657179.1 338213124 10872227 complement(4281934..4282335) 1 NC_015703.1 COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: eat:EAT1b_0256 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; hypothetical protein 4282335 10872227 Runsl_3689 Runella slithyformis DSM 19594 hypothetical protein YP_004657179.1 4281934 R 761193 CDS YP_004657180.1 338213125 10872228 complement(4282341..4283168) 1 NC_015703.1 PFAM: short chain dehydrogenase; InterPro IPR001647; KEGG: hch:HCH_03339 transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; short-chain dehydrogenase/reductase SDR 4283168 10872228 Runsl_3690 Runella slithyformis DSM 19594 short-chain dehydrogenase/reductase SDR YP_004657180.1 4282341 R 761193 CDS YP_004657181.1 338213126 10872229 complement(4283288..4283866) 1 NC_015703.1 PFAM: Bacterial regulatory proteins, tetR family; KEGG: sli:Slin_1594 hypothetical protein; SPTR: uncharacterized protein; TetR family transcriptional regulator 4283866 10872229 Runsl_3691 Runella slithyformis DSM 19594 TetR family transcriptional regulator YP_004657181.1 4283288 R 761193 CDS YP_004657182.1 338213127 10872230 complement(4284062..4284724) 1 NC_015703.1 PFAM: START domain; COGs: COG0793 Periplasmic protease; InterPro IPR005151; KEGG: fps:FP1003 hypothetical protein; PFAM: Peptidase S41; SMART: Peptidase S41; SPTR: Peptidase, S41 family; hypothetical protein 4284724 10872230 Runsl_3692 Runella slithyformis DSM 19594 hypothetical protein YP_004657182.1 4284062 R 761193 CDS YP_004657183.1 338213128 10872231 complement(4284779..4286275) 1 NC_015703.1 PFAM: Peptidase S41; KEGG: sli:Slin_5896 hypothetical protein; SPTR: uncharacterized protein; peptidase S41 4286275 10872231 Runsl_3693 Runella slithyformis DSM 19594 peptidase S41 YP_004657183.1 4284779 R 761193 CDS YP_004657184.1 338213129 10872232 4286448..4286927 1 NC_015703.1 KEGG: shg:Sph21_0744 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4286927 10872232 Runsl_3694 Runella slithyformis DSM 19594 hypothetical protein YP_004657184.1 4286448 D 761193 CDS YP_004657185.1 338213130 10872233 4287071..4288753 1 NC_015703.1 COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: sli:Slin_0742 LmbE family protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR: LmbE family protein; hypothetical protein 4288753 10872233 Runsl_3695 Runella slithyformis DSM 19594 hypothetical protein YP_004657185.1 4287071 D 761193 CDS YP_004657186.1 338213131 10872234 complement(4288964..4291462) 1 NC_015703.1 PFAM: GlcNAc-PI de-N-acetylase; KEGG: cpi:Cpin_2851 hypothetical protein; SPTR: uncharacterized protein; LmbE family protein 4291462 10872234 Runsl_3696 Runella slithyformis DSM 19594 LmbE family protein YP_004657186.1 4288964 R 761193 CDS YP_004657187.1 338213132 10872235 4291808..4292908 1 NC_015703.1 PFAM: Glycosyl hydrolases family 2, TIM barrel domain; KEGG: sli:Slin_6342 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4292908 10872235 Runsl_3697 Runella slithyformis DSM 19594 hypothetical protein YP_004657187.1 4291808 D 761193 CDS YP_004657188.1 338213133 10872236 4293180..4293740 1 NC_015703.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: sli:Slin_0732 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family; hypothetical protein 4293740 10872236 Runsl_3698 Runella slithyformis DSM 19594 hypothetical protein YP_004657188.1 4293180 D 761193 CDS YP_004657189.1 338213134 10872237 4293786..4294475 1 NC_015703.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: sli:Slin_0731 histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SPTR: Histidine kinase; winged helix family two component transcriptional regulator 4294475 10872237 Runsl_3699 Runella slithyformis DSM 19594 winged helix family two component transcriptional regulator YP_004657189.1 4293786 D 761193 CDS YP_004657190.1 338213135 10872238 4294472..4295836 1 NC_015703.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; integral membrane sensor signal transduction histidine kinase 4295836 10872238 Runsl_3700 Runella slithyformis DSM 19594 integral membrane sensor signal transduction histidine kinase YP_004657190.1 4294472 D 761193 CDS YP_004657191.1 338213136 10872239 4295912..4296220 1 NC_015703.1 COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: mtt:Ftrac_1605 SPFH domain, band 7 family protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: SPFH domain, Band 7 family protein; hypothetical protein 4296220 10872239 Runsl_3701 Runella slithyformis DSM 19594 hypothetical protein YP_004657191.1 4295912 D 761193 CDS YP_004657192.1 338213137 10872240 4296364..4297152 1 NC_015703.1 PFAM: SPFH domain / Band 7 family; KEGG: sli:Slin_0728 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4297152 10872240 Runsl_3702 Runella slithyformis DSM 19594 hypothetical protein YP_004657192.1 4296364 D 761193 CDS YP_004657193.1 338213138 10872241 4297250..4297609 1 NC_015703.1 PFAM: Tellurite resistance protein TerB; InterPro IPR001611:IPR003591; KEGG: lil:LA_3324 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4297609 10872241 Runsl_3703 Runella slithyformis DSM 19594 hypothetical protein YP_004657193.1 4297250 D 761193 CDS YP_004657194.1 338213139 10872242 4298022..4298678 1 NC_015703.1 PFAM: Leucine Rich Repeat; hypothetical protein 4298678 10872242 Runsl_3704 Runella slithyformis DSM 19594 hypothetical protein YP_004657194.1 4298022 D 761193 CDS YP_004657195.1 338213140 10872243 4298874..4299272 1 NC_015703.1 InterPro IPR013216; KEGG: dfe:Dfer_1146 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; hypothetical protein 4299272 10872243 Runsl_3705 Runella slithyformis DSM 19594 hypothetical protein YP_004657195.1 4298874 D 761193 CDS YP_004657196.1 338213141 10872244 complement(4299446..4300213) 1 NC_015703.1 PFAM: Methyltransferase domain; KEGG: sli:Slin_2010 hypothetical protein; SPTR: uncharacterized protein; type 11 methyltransferase 4300213 10872244 Runsl_3706 Runella slithyformis DSM 19594 type 11 methyltransferase YP_004657196.1 4299446 R 761193 CDS YP_004657197.1 338213142 10872245 4300355..4300663 1 NC_015703.1 KEGG: sli:Slin_2009 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4300663 10872245 Runsl_3707 Runella slithyformis DSM 19594 hypothetical protein YP_004657197.1 4300355 D 761193 CDS YP_004657198.1 338213143 10872246 complement(4300660..4300809) 1 NC_015703.1 COGs: COG0124 Histidyl-tRNA synthetase; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; InterPro IPR015807:IPR002314:IPR004154; KEGG: dfe:Dfer_1143 histidyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Anticodon-binding; PRIAM: Histidine--tRNA ligase; SPTR: Histidyl-tRNA synthetase; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; hypothetical protein 4300809 10872246 Runsl_3708 Runella slithyformis DSM 19594 hypothetical protein YP_004657198.1 4300660 R 761193 CDS YP_004657199.1 338213144 10872247 4301002..4302363 1 NC_015703.1 PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase; COGs: COG0706 Preprotein translocase subunit YidC; HAMAP: Membrane protein oxaA; InterPro IPR019998:IPR020001:IPR001708; KEGG: sli:Slin_2014 membrane protein insertase; PFAM: Membrane insertion protein, OxaA/YidC; SPTR: Inner membrane protein oxaA; TIGRFAM: Membrane insertion protein, OxaA/YidC, core; Membrane insertion protein, OxoA/YidC, N-terminal; histidyl-tRNA synthetase 4302363 10872247 Runsl_3709 Runella slithyformis DSM 19594 histidyl-tRNA synthetase YP_004657199.1 4301002 D 761193 CDS YP_004657200.1 338213145 10872248 complement(4302460..4304340) 1 NC_015703.1 PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; membrane protein insertase, YidC/Oxa1 family, N-terminal domain; COGs: COG1158 Transcription termination factor; InterProIPR004665:IPR011112:IPR011113:IPR000194:IPR 011129:IPR003593; KEGG: dfe:Dfer_5202 transcription termination factor Rho; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, RNA-binding; Rho termination factor, N-terminal; SMART: Cold shock protein; ATPase, AAA+ type, core; SPTR: Transcription termination factor Rho; TIGRFAM: Transcription termination factor Rho; membrane protein OxaA 4304340 10872248 Runsl_3710 Runella slithyformis DSM 19594 membrane protein OxaA YP_004657200.1 4302460 R 761193 CDS YP_004657201.1 338213146 10872249 4304772..4306598 1 NC_015703.1 PFAM: Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho; COGs: COG0313 methyltransferase; InterPro IPR000878; KEGG: sli:Slin_3013 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; PFAM: Tetrapyrrole methylase; SPTR: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; transcription termination factor Rho 4306598 10872249 Runsl_3711 Runella slithyformis DSM 19594 transcription termination factor Rho YP_004657201.1 4304772 D 761193 CDS YP_004657202.1 338213147 10872250 complement(4306676..4307374) 1 NC_015703.1 PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: sli:Slin_3012 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; uroporphyrin-III C/tetrapyrrole methyltransferase 4307374 10872250 Runsl_3712 Runella slithyformis DSM 19594 uroporphyrin-III C/tetrapyrrole methyltransferase YP_004657202.1 4306676 R 761193 CDS YP_004657203.1 338213148 10872251 complement(4307371..4308135) 1 NC_015703.1 PFAM: alpha/beta hydrolase fold; KEGG: dfe:Dfer_2155 hypothetical protein; SPTR: uncharacterized protein; alpha/beta hydrolase 4308135 10872251 Runsl_3713 Runella slithyformis DSM 19594 alpha/beta hydrolase YP_004657203.1 4307371 R 761193 CDS YP_004657204.1 338213149 10872252 complement(4308417..4309028) 1 NC_015703.1 hypothetical protein 4309028 10872252 Runsl_3714 Runella slithyformis DSM 19594 hypothetical protein YP_004657204.1 4308417 R 761193 CDS YP_004657205.1 338213150 10872253 4309239..4309469 1 NC_015703.1 COGs: COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); InterPro IPR005875:IPR003135; KEGG: dfe:Dfer_5765 phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; TIGRFAM: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; hypothetical protein 4309469 10872253 Runsl_3715 Runella slithyformis DSM 19594 hypothetical protein YP_004657205.1 4309239 D 761193 CDS YP_004657206.1 338213151 10872254 4309535..4310668 1 NC_015703.1 PFAM: ATP-grasp domain; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurK protein; phosphoribosylaminoimidazole carboxylase ATPase subunit 4310668 10872254 Runsl_3716 Runella slithyformis DSM 19594 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_004657206.1 4309535 D 761193 CDS YP_004657207.1 338213152 10872255 complement(4311128..4311367) 1 NC_015703.1 COGs: COG1252 NADH dehydrogenase FAD-containing subunit; InterPro IPR013027; KEGG: lby:Lbys_2555 fad-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: NADH dehydrogenase (ubiquinone); SPTR: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; hypothetical protein 4311367 10872255 Runsl_3717 Runella slithyformis DSM 19594 hypothetical protein YP_004657207.1 4311128 R 761193 CDS YP_004657208.1 338213153 10872256 4311547..4312851 1 NC_015703.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: sli:Slin_4917 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: Band 7 protein; NADH dehydrogenase (ubiquinone) 4312851 10872256 Runsl_3718 Runella slithyformis DSM 19594 NADH dehydrogenase (ubiquinone) YP_004657208.1 4311547 D 761193 CDS YP_004657209.1 338213154 10872257 4312993..4313898 1 NC_015703.1 PFAM: SPFH domain / Band 7 family; InterPro IPR008538; KEGG: dfe:Dfer_4621 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; hypothetical protein 4313898 10872257 Runsl_3719 Runella slithyformis DSM 19594 hypothetical protein YP_004657209.1 4312993 D 761193 CDS YP_004657210.1 338213155 10872258 4314045..4314590 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); KEGG: sli:Slin_5175 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4314590 10872258 Runsl_3720 Runella slithyformis DSM 19594 hypothetical protein YP_004657210.1 4314045 D 761193 CDS YP_004657211.1 338213156 10872259 complement(4314671..4315102) 1 NC_015703.1 COGs: COG0379 Quinolinate synthase; HAMAP: Quinolinate synthase A; InterPro IPR003473; KEGG: sli:Slin_5129 quinolinate synthetase complex, subunit alpha; PFAM: Quinolinate synthetase A; PRIAM: Quinolinate synthase; SPTR: Quinolinate synthase A; TIGRFAM: Quinolinate synthetase A; hypothetical protein 4315102 10872259 Runsl_3721 Runella slithyformis DSM 19594 hypothetical protein YP_004657211.1 4314671 R 761193 CDS YP_004657212.1 338213157 10872260 4315234..4316232 1 NC_015703.1 PFAM: Quinolinate synthetase A protein; TIGRFAM: quinolinate synthetase complex, A subunit; quinolinate synthase A 4316232 10872260 Runsl_3722 Runella slithyformis DSM 19594 quinolinate synthase A YP_004657212.1 4315234 D 761193 CDS YP_004657213.1 338213158 10872261 4316318..4316425 1 NC_015703.1 KEGG: dfe:Dfer_3149 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4316425 10872261 Runsl_3723 Runella slithyformis DSM 19594 hypothetical protein YP_004657213.1 4316318 D 761193 CDS YP_004657214.1 338213159 10872262 4316485..4317381 1 NC_015703.1 PFAM: Nucleotidyl transferase; COGs: COG0759 conserved hypothetical protein; HAMAP: Protein of unknown function DUF37; InterPro IPR002696; KEGG: sli:Slin_1083 hypothetical protein; PFAM: Protein of unknown function DUF37; SPTR: UPF0161 protein Slin_1083; TIGRFAM: Protein of unknown function DUF37; hypothetical protein 4317381 10872262 Runsl_3724 Runella slithyformis DSM 19594 hypothetical protein YP_004657214.1 4316485 D 761193 CDS YP_004657215.1 338213160 10872263 4317434..4317643 1 NC_015703.1 PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein YidD; KEGG: sli:Slin_4681 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4317643 10872263 Runsl_3725 Runella slithyformis DSM 19594 hypothetical protein YP_004657215.1 4317434 D 761193 CDS YP_004657216.1 338213161 10872264 4317686..4317910 1 NC_015703.1 COGs: COG4185 conserved hypothetical protein; KEGG: pbs:Plabr_1004 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4317910 10872264 Runsl_3726 Runella slithyformis DSM 19594 hypothetical protein YP_004657216.1 4317686 D 761193 CDS YP_004657217.1 338213162 10872265 4317910..4318638 1 NC_015703.1 PFAM: Zeta toxin; hypothetical protein 4318638 10872265 Runsl_3727 Runella slithyformis DSM 19594 hypothetical protein YP_004657217.1 4317910 D 761193 CDS YP_004657218.1 338213163 10872266 4318641..4319096 1 NC_015703.1 COGs: COG0447 Dihydroxynaphthoic acid synthase; InterPro IPR010198:IPR001753; KEGG: lby:Lbys_2851 1,4-dihydroxy-2-naphthoate synthase; PFAM: Crotonase, core; PRIAM: Naphthoate synthase; SPTR: 1,4-Dihydroxy-2-naphthoate synthase; TIGRFAM: Naphthoate synthase; hypothetical protein 4319096 10872266 Runsl_3728 Runella slithyformis DSM 19594 hypothetical protein YP_004657218.1 4318641 D 761193 CDS YP_004657219.1 338213164 10872267 4319179..4320015 1 NC_015703.1 PFAM: Enoyl-CoA hydratase/isomerase; TIGRFAM: naphthoate synthase (dihydroxynaphthoic acid synthetase); KEGG: sli:Slin_5826 hypothetical protein; SPTR: uncharacterized protein; naphthoate synthase 4320015 10872267 Runsl_3729 Runella slithyformis DSM 19594 naphthoate synthase YP_004657219.1 4319179 D 761193 CDS YP_004657220.1 338213165 10872268 4320143..4320616 1 NC_015703.1 COGs: COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); HAMAP: NAD(P)H-quinone oxidoreductase subunit 1; InterPro IPR001694; KEGG: sli:Slin_2443 NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone oxidoreductase, subunit 1; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit H 1; hypothetical protein 4320616 10872268 Runsl_3730 Runella slithyformis DSM 19594 hypothetical protein YP_004657220.1 4320143 D 761193 CDS YP_004657221.1 338213166 10872269 4320620..4321705 1 NC_015703.1 PFAM: NADH dehydrogenase; NAD(P)H-quinone oxidoreductase subunit 1 4321705 10872269 Runsl_3731 Runella slithyformis DSM 19594 NAD(P)H-quinone oxidoreductase subunit 1 YP_004657221.1 4320620 D 761193 CDS YP_004657222.1 338213167 10872270 4321975..4322106 1 NC_015703.1 KEGG: mlo:mll1436 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4322106 10872270 Runsl_3732 Runella slithyformis DSM 19594 hypothetical protein YP_004657222.1 4321975 D 761193 CDS YP_004657223.1 338213168 10872271 4322259..4323551 1 NC_015703.1 COGs: COG1690 conserved hypothetical protein; InterPro IPR001233; KEGG: sli:Slin_1492 hypothetical protein; PFAM: Uncharacterised protein family UPF0027; SPTR: uncharacterized protein; hypothetical protein 4323551 10872271 Runsl_3733 Runella slithyformis DSM 19594 hypothetical protein YP_004657223.1 4322259 D 761193 CDS YP_004657224.1 338213169 10872272 4323643..4325169 1 NC_015703.1 PFAM: Uncharacterized protein family UPF0027; COGs: COG0525 Valyl-tRNA synthetase; HAMAP: Valyl-tRNA synthetase; InterPro IPR002303:IPR002300:IPR013155:IPR019499; KEGG: dfe:Dfer_4095 valyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ia; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; Valyl-tRNA synthetase, class Ia, tRNA binding arm; PRIAM: Valine--tRNA ligase; SPTR: Valyl-tRNA synthetase; TIGRFAM: Valyl-tRNA synthetase, class Ia; hypothetical protein 4325169 10872272 Runsl_3734 Runella slithyformis DSM 19594 hypothetical protein YP_004657224.1 4323643 D 761193 CDS YP_004657225.1 338213170 10872273 4325138..4327966 1 NC_015703.1 PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase; KEGG: lby:Lbys_2119 hypothetical protein; SPTR: uncharacterized protein; valyl-tRNA synthetase 4327966 10872273 Runsl_3735 Runella slithyformis DSM 19594 valyl-tRNA synthetase YP_004657225.1 4325138 D 761193 CDS YP_004657226.1 338213171 10872274 complement(4328029..4328799) 1 NC_015703.1 COGs: COG1522 Transcriptional regulators; InterPro IPR019887:IPR019888; KEGG: dfe:Dfer_3786 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type; SPTR: Transcriptional regulator, AsnC family; hypothetical protein 4328799 10872274 Runsl_3736 Runella slithyformis DSM 19594 hypothetical protein YP_004657226.1 4328029 R 761193 CDS YP_004657227.1 338213172 10872275 complement(4328924..4329388) 1 NC_015703.1 PFAM: AsnC family; COGs: COG0241 Histidinol phosphatase and related phosphatase; InterPro IPR006543:IPR006549:IPR005834; KEGG: sli:Slin_5528 hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Hydrolase, HAD-superfamily, subfamily IIIA; TIGRFAM: Histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; AsnC family transcriptional regulator 4329388 10872275 Runsl_3737 Runella slithyformis DSM 19594 AsnC family transcriptional regulator YP_004657227.1 4328924 R 761193 CDS YP_004657228.1 338213173 10872276 4329628..4330143 1 NC_015703.1 PFAM: Polynucleotide kinase 3 phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase domain; histidinol-phosphate phosphatase 4330143 10872276 Runsl_3738 Runella slithyformis DSM 19594 histidinol-phosphate phosphatase YP_004657228.1 4329628 D 761193 CDS YP_004657229.1 338213174 10872277 complement(4330144..4330260) 1 NC_015703.1 COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183; KEGG: dfe:Dfer_3427 Orn/DAP/Arg decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Orn/DAP/Arg decarboxylase 2; hypothetical protein 4330260 10872277 Runsl_3739 Runella slithyformis DSM 19594 hypothetical protein YP_004657229.1 4330144 R 761193 CDS YP_004657230.1 338213175 10872278 complement(4330352..4331833) 1 NC_015703.1 PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; COGs: COG0554 Glycerol kinase; HAMAP: Glycerol kinase; InterPro IPR005999:IPR018484:IPR018485; KEGG: dfe:Dfer_3902 glycerol kinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; PRIAM: Glycerol kinase; SPTR: Glycerol kinase; TIGRFAM: Glycerol kinase; Orn/DAP/Arg decarboxylase 2 4331833 10872278 Runsl_3740 Runella slithyformis DSM 19594 Orn/DAP/Arg decarboxylase 2 YP_004657230.1 4330352 R 761193 CDS YP_004657231.1 338213176 10872279 4332258..4333757 1 NC_015703.1 PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: glycerol kinase; COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: sli:Slin_3005 fatty acid hydroxylase; PFAM: Fatty acid hydroxylase; SPTR: Fatty acid hydroxylase; glycerol kinase 4333757 10872279 Runsl_3741 Runella slithyformis DSM 19594 glycerol kinase YP_004657231.1 4332258 D 761193 CDS YP_004657232.1 338213177 10872280 complement(4333807..4334607) 1 NC_015703.1 PFAM: Fatty acid hydroxylase superfamily; COGs: COG0009 translation factor (SUA5); InterPro IPR004388:IPR006070:IPR005145; KEGG: sli:Slin_1394 SUA5/YciO/YrdC/YwlC family protein; PFAM: Sua5/YciO/YrdC, N-terminal; SUA5; SPTR: Sua5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; fatty acid hydroxylase 4334607 10872280 Runsl_3742 Runella slithyformis DSM 19594 fatty acid hydroxylase YP_004657232.1 4333807 R 761193 CDS YP_004657233.1 338213178 10872281 complement(4334654..4335616) 1 NC_015703.1 PFAM: yrdC domain; SUA5 domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; InterPro IPR002035; KEGG: dfe:Dfer_5483 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: von Willebrand factor type A; Sua5/YciO/YrdC/YwlC family protein 4335616 10872281 Runsl_3743 Runella slithyformis DSM 19594 Sua5/YciO/YrdC/YwlC family protein YP_004657233.1 4334654 R 761193 CDS YP_004657234.1 338213179 10872282 4335701..4336660 1 NC_015703.1 PFAM: von Willebrand factor type A domain; COGs: COG0531 Amino acid transporter; InterPro IPR004757:IPR004841; KEGG: shg:Sph21_0667 ethanolamine transporter; PFAM: Amino acid permease-associated region; SPTR: Ethanolamine transporter; TIGRFAM: Ethanolamine permease; von Willebrand factor A 4336660 10872282 Runsl_3744 Runella slithyformis DSM 19594 von Willebrand factor A YP_004657234.1 4335701 D 761193 CDS YP_004657235.1 338213180 10872283 4336740..4338071 1 NC_015703.1 PFAM: Amino acid permease; TIGRFAM: ethanolamine permease; COGs: COG4974 Site-specific recombinase XerD; HAMAP: Tyrosine recombinase xerC; InterPro IPR011932:IPR004107:IPR002104; KEGG: dfe:Dfer_2797 tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Tyrosine recombinase xerC 1; TIGRFAM: Tyrosine recombinase XerD; ethanolamine transporter 4338071 10872283 Runsl_3745 Runella slithyformis DSM 19594 ethanolamine transporter YP_004657235.1 4336740 D 761193 CDS YP_004657236.1 338213181 10872284 4338585..4339547 1 NC_015703.1 PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase; TIGRFAM: tyrosine recombinase XerD; KEGG: sli:Slin_2437 hypothetical protein; SPTR: uncharacterized protein; tyrosine recombinase XerC 4339547 10872284 Runsl_3746 Runella slithyformis DSM 19594 tyrosine recombinase XerC YP_004657236.1 4338585 D 761193 CDS YP_004657237.1 338213182 10872285 complement(4339638..4340177) 1 NC_015703.1 COGs: COG0520 Selenocysteine lyase; InterPro IPR000192; KEGG: sli:Slin_2438 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; SPTR: Aminotransferase class V; hypothetical protein 4340177 10872285 Runsl_3747 Runella slithyformis DSM 19594 hypothetical protein YP_004657237.1 4339638 R 761193 CDS YP_004657238.1 338213183 10872286 4340338..4341510 1 NC_015703.1 PFAM: Aminotransferase class-V; KEGG: sli:Slin_2440 hypothetical protein; SPTR: uncharacterized protein; class V aminotransferase 4341510 10872286 Runsl_3748 Runella slithyformis DSM 19594 class V aminotransferase YP_004657238.1 4340338 D 761193 CDS YP_004657239.1 338213184 10872287 complement(4341507..4341689) 1 NC_015703.1 COGs: COG2062 Phosphohistidine phosphatase SixA; InterPro IPR013078; KEGG: dfe:Dfer_2799 phosphohistidine phosphatase, SixA; PFAM: Phosphoglycerate mutase; SPTR: phosphohistidine phosphatase, SixA; hypothetical protein 4341689 10872287 Runsl_3749 Runella slithyformis DSM 19594 hypothetical protein YP_004657239.1 4341507 R 761193 CDS YP_004657240.1 338213185 10872288 complement(4341737..4342333) 1 NC_015703.1 PFAM: Phosphoglycerate mutase; TIGRFAM: phosphohistidine phosphatase SixA; COGs: COG4108 Peptide chain release factor RF-3; InterPro IPR004548:IPR005225:IPR000795; KEGG: sli:Slin_1118 peptide chain release factor 3; PFAM: Protein synthesis factor, GTP-binding; SPTR: Peptide chain release factor 3; TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; phosphohistidine phosphatase, SixA 4342333 10872288 Runsl_3750 Runella slithyformis DSM 19594 phosphohistidine phosphatase, SixA YP_004657240.1 4341737 R 761193 CDS YP_004657241.1 338213186 10872289 4342827..4344422 1 NC_015703.1 PFAM: Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; peptide chain release factor 3; COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR010976:IPR010972:IPR006402:IPR005834; KEGG: sli:Slin_2877 beta-phosphoglucomutase; PFAM: Haloacid dehalogenase-like hydrolase; PRIAM: Beta-phosphoglucomutase; SPTR: Beta-phosphoglucomutase; TIGRFAM: Beta-phosphoglucomutase; Beta-phosphoglucomutase hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; peptide chain release factor 3 4344422 10872289 Runsl_3751 Runella slithyformis DSM 19594 peptide chain release factor 3 YP_004657241.1 4342827 D 761193 CDS YP_004657242.1 338213187 10872290 complement(4344619..4345284) 1 NC_015703.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: beta-phosphoglucomutase; haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; beta-phosphoglucomutase hydrolase; InterPro IPR003737; KEGG: dfe:Dfer_3412 LmbE family protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR: LmbE family protein; beta-phosphoglucomutase 4345284 10872290 Runsl_3752 Runella slithyformis DSM 19594 beta-phosphoglucomutase YP_004657242.1 4344619 R 761193 CDS YP_004657243.1 338213188 10872291 complement(4345375..4346217) 1 NC_015703.1 PFAM: GlcNAc-PI de-N-acetylase; LmbE family protein 4346217 10872291 Runsl_3753 Runella slithyformis DSM 19594 LmbE family protein YP_004657243.1 4345375 R 761193 CDS YP_004657244.1 338213189 10872292 4346425..4346583 1 NC_015703.1 InterPro IPR005181; KEGG: sli:Slin_5096 hypothetical protein; PFAM: Protein of unknown function DUF303, acetylesterase SPTR: uncharacterized protein; hypothetical protein 4346583 10872292 Runsl_3754 Runella slithyformis DSM 19594 hypothetical protein YP_004657244.1 4346425 D 761193 CDS YP_004657245.1 338213190 10872293 4346642..4348525 1 NC_015703.1 PFAM: Domain of unknown function (DUF303); COGs: COG0647 sugar phosphatase of the HAD superfamily; InterPro IPR006357:IPR005834; KEGG: dfe:Dfer_3644 HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IIA; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; hypothetical protein 4348525 10872293 Runsl_3755 Runella slithyformis DSM 19594 hypothetical protein YP_004657245.1 4346642 D 761193 CDS YP_004657246.1 338213191 10872294 complement(4348545..4349399) 1 NC_015703.1 TIGRFAM: Haloacid Dehalogenase Superfamily Class (subfamily) IIA; HAD-superfamily class IIA hydrolase, TIGR01459; KEGG: sli:Slin_5140 hypothetical protein; SPTR: uncharacterized protein; HAD superfamily hydrolase 4349399 10872294 Runsl_3756 Runella slithyformis DSM 19594 HAD superfamily hydrolase YP_004657246.1 4348545 R 761193 CDS YP_004657247.1 338213192 10872295 complement(4349440..4350486) 1 NC_015703.1 COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; InterPro IPR000713:IPR013221; KEGG: dfe:Dfer_4117 Mur ligase middle domain protein; PFAM: Mur ligase, N-terminal; Mur ligase, central; PRIAM: UDP-N-acetylmuramate--L-alanine ligase; SPTR: Mur ligase middle domain protein; hypothetical protein 4350486 10872295 Runsl_3757 Runella slithyformis DSM 19594 hypothetical protein YP_004657247.1 4349440 R 761193 CDS YP_004657248.1 338213193 10872296 complement(4350681..4352042) 1 NC_015703.1 PFAM: Mur ligase, catalytic domain; Mur ligase middle domain; COGs: COG1214 Inactive homolog of metal-dependent protease molecular chaperone; InterPro IPR000905; KEGG: dfe:Dfer_3849 peptidase M22 glycoprotease; PFAM: Peptidase M22, glycoprotease; SPTR: Peptidase M22 glycoprotease; TIGRFAM: universal protein YeaZ; UDP-N-acetylmuramate--L-alanine ligase 4352042 10872296 Runsl_3758 Runella slithyformis DSM 19594 UDP-N-acetylmuramate--L-alanine ligase YP_004657248.1 4350681 R 761193 CDS YP_004657249.1 338213194 10872297 4352184..4352882 1 NC_015703.1 PFAM: Glycoprotease; TIGRFAM: universal bacterial protein YeaZ; hypothetical protein 4352882 10872297 Runsl_3759 Runella slithyformis DSM 19594 hypothetical protein YP_004657249.1 4352184 D 761193 CDS YP_004657250.1 338213195 10872298 complement(4352828..4352938) 1 NC_015703.1 COGs: COG1520 FOG: WD40-like repeat; InterPro IPR002372:IPR018391; KEGG: mpi:Mpet_1134 pyrrolo-quinoline quinone; PFAM: Pyrrolo-quinoline quinone repeat; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Pyrrolo-quinoline quinone; tmRNA as predicted by Rfam (RF00023), score 132.00; hypothetical protein 4352938 10872298 Runsl_3760 Runella slithyformis DSM 19594 hypothetical protein YP_004657250.1 4352828 R 761193 CDS YP_004657251.1 338213196 10872299 4352994..4354181 1 NC_015703.1 PFAM: PQQ enzyme repeat; pyrrolo-quinoline quinone repeat-containing protein 4354181 10872299 Runsl_R0032 Runella slithyformis DSM 19594 pyrrolo-quinoline quinone repeat-containing protein YP_004657251.1 4352994 D 761193 CDS YP_004657252.1 338213197 10872300 4354970..4355110 1 NC_015703.1 hypothetical protein 4355110 10872300 Runsl_3762 Runella slithyformis DSM 19594 hypothetical protein YP_004657252.1 4354970 D 761193 CDS YP_004657253.1 338213198 10872301 4355248..4355499 1 NC_015703.1 KEGG: npu:Npun_F6119 transposase; SPTR: uncharacterized protein; hypothetical protein 4355499 10872301 Runsl_3763 Runella slithyformis DSM 19594 hypothetical protein YP_004657253.1 4355248 D 761193 CDS YP_004657254.1 338213199 10872302 complement(4355998..4356486) 1 NC_015703.1 hypothetical protein 4356486 10872302 Runsl_3764 Runella slithyformis DSM 19594 hypothetical protein YP_004657254.1 4355998 R 761193 CDS YP_004657255.1 338213200 10872303 complement(4356556..4357902) 1 NC_015703.1 hypothetical protein 4357902 10872303 Runsl_3765 Runella slithyformis DSM 19594 hypothetical protein YP_004657255.1 4356556 R 761193 CDS YP_004657256.1 338213201 10872304 complement(4357963..4358193) 1 NC_015703.1 hypothetical protein 4358193 10872304 Runsl_3766 Runella slithyformis DSM 19594 hypothetical protein YP_004657256.1 4357963 R 761193 CDS YP_004657257.1 338213202 10872305 complement(4359036..4359155) 1 NC_015703.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595:IPR001808; KEGG: sli:Slin_6930 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; SPTR: Transcriptional regulator, Crp/Fnr family; hypothetical protein 4359155 10872305 Runsl_3767 Runella slithyformis DSM 19594 hypothetical protein YP_004657257.1 4359036 R 761193 CDS YP_004657258.1 338213203 10872306 complement(4359167..4359817) 1 NC_015703.1 PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR008030; KEGG: mtt:Ftrac_1330 NmrA family protein; SPTR: NmrA family protein; Crp/Fnr family transcriptional regulator 4359817 10872306 Runsl_3768 Runella slithyformis DSM 19594 Crp/Fnr family transcriptional regulator YP_004657258.1 4359167 R 761193 CDS YP_004657259.1 338213204 10872307 complement(4359930..4360799) 1 NC_015703.1 PFAM: NmrA-like family; KEGG: fjo:Fjoh_3341 glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; NmrA family protein 4360799 10872307 Runsl_3769 Runella slithyformis DSM 19594 NmrA family protein YP_004657259.1 4359930 R 761193 CDS YP_004657260.1 338213205 10872308 complement(4360935..4361591) 1 NC_015703.1 COGs: COG2323 membrane protein; InterPro IPR007353; KEGG: fba:FIC_00896 protein of unknown function DUF421; PFAM: Protein of unknown function DUF421; SPTR: uncharacterized protein; glyoxalase/bleomycin resistance protein/dioxygenase 4361591 10872308 Runsl_3770 Runella slithyformis DSM 19594 glyoxalase/bleomycin resistance protein/dioxygenase YP_004657260.1 4360935 R 761193 CDS YP_004657261.1 338213206 10872309 complement(4361904..4362584) 1 NC_015703.1 PFAM: Protein of unknown function (DUF421); hypothetical protein 4362584 10872309 Runsl_3771 Runella slithyformis DSM 19594 hypothetical protein YP_004657261.1 4361904 R 761193 CDS YP_004657262.1 338213207 10872310 complement(4362771..4362947) 1 NC_015703.1 PFAM: Integral membrane protein TerC family; COGs: COG4430 conserved hypothetical protein; KEGG: zpr:ZPR_3958 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4362947 10872310 Runsl_3772 Runella slithyformis DSM 19594 hypothetical protein YP_004657262.1 4362771 R 761193 CDS YP_004657263.1 338213208 10872311 complement(4363066..4363644) 1 NC_015703.1 COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; KEGG: dfe:Dfer_0232 ATP-dependent exoDNAse (exonuclease V); SPTR: ATP-dependent exoDNAse (Exonuclease V); hypothetical protein 4363644 10872311 Runsl_3773 Runella slithyformis DSM 19594 hypothetical protein YP_004657263.1 4363066 R 761193 CDS YP_004657264.1 338213209 10872312 complement(4363702..4365120) 1 NC_015703.1 PFAM: PIF1 helicase; COGs: COG2905 signal-transduction protein containing cAMP-binding and CBS domains; InterPro IPR000644; KEGG: sli:Slin_1462 signal transduction protein with CBS domains; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; SPTR: signal transduction protein with CBS domains; ATP-dependent exoDNAse 4365120 10872312 Runsl_3774 Runella slithyformis DSM 19594 ATP-dependent exoDNAse YP_004657264.1 4363702 R 761193 CDS YP_004657265.1 338213210 10872313 4365258..4365698 1 NC_015703.1 PFAM: CBS domain; COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: sli:Slin_1463 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; signal transduction protein with CBS domains 4365698 10872313 Runsl_3775 Runella slithyformis DSM 19594 signal transduction protein with CBS domains YP_004657265.1 4365258 D 761193 CDS YP_004657266.1 338213211 10872314 4365817..4366335 1 NC_015703.1 PFAM: NUDIX domain; KEGG: sli:Slin_1464 hypothetical protein; SPTR: uncharacterized protein; NUDIX hydrolase 4366335 10872314 Runsl_3776 Runella slithyformis DSM 19594 NUDIX hydrolase YP_004657266.1 4365817 D 761193 CDS YP_004657267.1 338213212 10872315 4366462..4367352 1 NC_015703.1 COGs: COG0669 Phosphopantetheine adenylyltransferase; HAMAP: Coenzyme A biosynthesis protein; InterPro IPR001980:IPR004821:IPR004820; KEGG: sli:Slin_1465 pantetheine-phosphate adenylyltransferase; PFAM: Cytidylyltransferase; PRIAM: Pantetheine-phosphate adenylyltransferase; SPTR: Phosphopantetheine adenylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; hypothetical protein 4367352 10872315 Runsl_3777 Runella slithyformis DSM 19594 hypothetical protein YP_004657267.1 4366462 D 761193 CDS YP_004657268.1 338213213 10872316 4367379..4367852 1 NC_015703.1 PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain; KEGG: dfe:Dfer_0389 hypothetical protein; SPTR: uncharacterized protein; phosphopantetheine adenylyltransferase 4367852 10872316 Runsl_3778 Runella slithyformis DSM 19594 phosphopantetheine adenylyltransferase YP_004657268.1 4367379 D 761193 CDS YP_004657269.1 338213214 10872317 complement(4367836..4368240) 1 NC_015703.1 COGs: COG4464 Capsular polysaccharide biosynthesis protein; InterPro IPR004013; KEGG: chu:CHU_0001 capsular polysaccharide biosynthesis protein; PFAM: PHP, C-terminal; SPTR: Capsular polysaccharide biosynthesis protein; hypothetical protein 4368240 10872317 Runsl_3779 Runella slithyformis DSM 19594 hypothetical protein YP_004657269.1 4367836 R 761193 CDS YP_004657270.1 338213215 10872318 complement(4368300..4369043) 1 NC_015703.1 COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: dfe:Dfer_2965 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PHP domain-containing protein 4369043 10872318 Runsl_3780 Runella slithyformis DSM 19594 PHP domain-containing protein YP_004657270.1 4368300 R 761193 CDS YP_004657271.1 338213216 10872319 complement(4369237..4369782) 1 NC_015703.1 PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_2907 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; dTDP-4-dehydrorhamnose 3,5-epimerase 4369782 10872319 Runsl_3781 Runella slithyformis DSM 19594 dTDP-4-dehydrorhamnose 3,5-epimerase YP_004657271.1 4369237 R 761193 CDS YP_004657272.1 338213217 10872320 4369832..4370923 1 NC_015703.1 PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_2906 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; signal transduction histidine kinase 4370923 10872320 Runsl_3782 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004657272.1 4369832 D 761193 CDS YP_004657273.1 338213218 10872321 4370996..4371730 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR019546:IPR000683; KEGG: psn:Pedsa_0077 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: Oxidoreductase domain protein; LytTR family two component transcriptional regulator 4371730 10872321 Runsl_3783 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004657273.1 4370996 D 761193 CDS YP_004657274.1 338213219 10872322 complement(4371815..4373200) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; KEGG: sli:Slin_4197 DinB family protein; SPTR: DinB family protein; oxidoreductase domain-containing protein 4373200 10872322 Runsl_3784 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004657274.1 4371815 R 761193 CDS YP_004657275.1 338213220 10872323 complement(4373645..4374097) 1 NC_015703.1 PFAM: DinB family; COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); InterPro IPR004655:IPR013751:IPR013747; KEGG: dfe:Dfer_5065 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase III; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase 3 3; TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); DinB family protein 4374097 10872323 Runsl_3785 Runella slithyformis DSM 19594 DinB family protein YP_004657275.1 4373645 R 761193 CDS YP_004657276.1 338213221 10872324 complement(4374256..4375257) 1 NC_015703.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; COGs: COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase PurS component; InterPro IPR003850; KEGG: sli:Slin_3016 phosphoribosylformylglycinamidine synthase, PurS; PFAM: Phosphoribosylformylglycinamidine synthetase, PurS subunit; SPTR: Phosphoribosylformylglycinamidine synthase, PurS protein; TIGRFAM: Phosphoribosylformylglycinamidine synthetase, PurS subunit; 3-oxoacyl-ACP synthase 4375257 10872324 Runsl_3786 Runella slithyformis DSM 19594 3-oxoacyl-ACP synthase YP_004657276.1 4374256 R 761193 CDS YP_004657277.1 338213222 10872325 complement(4375354..4375605) 1 NC_015703.1 PFAM: Phosphoribosylformylglycinamidine (FGAM) synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase, purS protein; COGs: COG1183 Phosphatidylserine synthase; InterPro IPR004533:IPR000462; KEGG: dfe:Dfer_5066 CDP-diacylglycerol/serineO-phosphatidyltransfera se; PFAM: CDP-alcohol phosphatidyltransferase; SPTR:CDP-diacylglycerol-serine-O-phosphatidyltransf erase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; phosphoribosylformylglycinamidine synthase PurS 4375605 10872325 Runsl_3787 Runella slithyformis DSM 19594 phosphoribosylformylglycinamidine synthase PurS YP_004657277.1 4375354 R 761193 CDS YP_004657278.1 338213223 10872326 complement(4375697..4376398) 1 NC_015703.1 PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sli:Slin_3014 beta-lactamase; SPTR: Beta-lactamase domain protein; CDP-diacylglycerol/serine O-phosphatidyltransferase 4376398 10872326 Runsl_3788 Runella slithyformis DSM 19594 CDP-diacylglycerol/serine O-phosphatidyltransferase YP_004657278.1 4375697 R 761193 CDS YP_004657279.1 338213224 10872327 complement(4376472..4377110) 1 NC_015703.1 PFAM: Metallo-beta-lactamase superfamily; COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: chu:CHU_3379 hypothetical protein; PFAM: Conserved hypothetical protein CHP00730; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00730; beta-lactamase 4377110 10872327 Runsl_3789 Runella slithyformis DSM 19594 beta-lactamase YP_004657279.1 4376472 R 761193 CDS YP_004657280.1 338213225 10872328 4377170..4377919 1 NC_015703.1 PFAM: Possible lysine decarboxylase; TIGRFAM: TIGR00725 family protein; TIGR00730 family protein; KEGG: sli:Slin_4251 membrane protein; SPTR: Membrane protein; hypothetical protein 4377919 10872328 Runsl_3790 Runella slithyformis DSM 19594 hypothetical protein YP_004657280.1 4377170 D 761193 CDS YP_004657281.1 338213226 10872329 complement(4377920..4378288) 1 NC_015703.1 KEGG: dfe:Dfer_2810 hypothetical protein; SPTR: uncharacterized protein; manually curated; hypothetical protein 4378288 10872329 Runsl_3791 Runella slithyformis DSM 19594 hypothetical protein YP_004657281.1 4377920 R 761193 CDS YP_004657282.1 338213227 10872330 complement(4378373..4378522) 1 NC_015703.1 KEGG: dfe:Dfer_2811 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4378522 10872330 Runsl_3792 Runella slithyformis DSM 19594 hypothetical protein YP_004657282.1 4378373 R 761193 CDS YP_004657283.1 338213228 10872331 complement(4378666..4379793) 1 NC_015703.1 COGs: COG2192 carbamoyl transferase NodU family; InterPro IPR003696; KEGG: dfe:Dfer_2812 carbamoyltransferase; PFAM: Carbamoyltransferase; SPTR: Carbamoyltransferase; hypothetical protein 4379793 10872331 Runsl_3793 Runella slithyformis DSM 19594 hypothetical protein YP_004657283.1 4378666 R 761193 CDS YP_004657284.1 338213229 10872332 complement(4379866..4381728) 1 NC_015703.1 PFAM: Carbamoyltransferase; InterPro IPR001087; KEGG: ter:Tery_1681 hypothetical protein; PFAM: Lipase, GDSL; SPTR: uncharacterized protein; carbamoyltransferase 4381728 10872332 Runsl_3794 Runella slithyformis DSM 19594 carbamoyltransferase YP_004657284.1 4379866 R 761193 CDS YP_004657285.1 338213230 10872333 4381887..4383284 1 NC_015703.1 PFAM: GDSL-like Lipase/Acylhydrolase; COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: sli:Slin_4256 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; SPTR: Ppx/GppA phosphatase; G-D-S-L family lipolytic protein 4383284 10872333 Runsl_3795 Runella slithyformis DSM 19594 G-D-S-L family lipolytic protein YP_004657285.1 4381887 D 761193 CDS YP_004657286.1 338213231 10872334 4383336..4384208 1 NC_015703.1 PFAM: Ppx/GppA phosphatase; COGs: COG3503 membrane protein; KEGG: sli:Slin_2897 hypothetical protein; SPTR: uncharacterized protein; Ppx/GppA phosphatase 4384208 10872334 Runsl_3796 Runella slithyformis DSM 19594 Ppx/GppA phosphatase YP_004657286.1 4383336 D 761193 CDS YP_004657287.1 338213232 10872335 complement(4384276..4385520) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1624); COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789; KEGG: dfe:Dfer_1630 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; hypothetical protein 4385520 10872335 Runsl_3797 Runella slithyformis DSM 19594 hypothetical protein YP_004657287.1 4384276 R 761193 CDS YP_004657288.1 338213233 10872336 complement(4385543..4386304) 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3920 Signal transduction histidine kinase; InterPro IPR011495:IPR003594; KEGG: dfe:Dfer_1629 signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: Signal transduction histidine kinase; response regulator receiver protein 4386304 10872336 Runsl_3798 Runella slithyformis DSM 19594 response regulator receiver protein YP_004657288.1 4385543 R 761193 CDS YP_004657289.1 338213234 10872337 complement(4386312..4388111) 1 NC_015703.1 PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro IPR005182; KEGG: pgi:PG1471 hypothetical protein; PFAM: Protein of unknown function DUF304, prokaryotic transmembrane adjacent region; SPTR: uncharacterized protein; signal transduction histidine kinase 4388111 10872337 Runsl_3799 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004657289.1 4386312 R 761193 CDS YP_004657290.1 338213235 10872338 4388449..4388892 1 NC_015703.1 PFAM: Bacterial membrane flanked domain; hypothetical protein 4388892 10872338 Runsl_3800 Runella slithyformis DSM 19594 hypothetical protein YP_004657290.1 4388449 D 761193 CDS YP_004657291.1 338213236 10872339 complement(4389151..4389327) 1 NC_015703.1 KEGG: ppn:Palpr_1196 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4389327 10872339 Runsl_3801 Runella slithyformis DSM 19594 hypothetical protein YP_004657291.1 4389151 R 761193 CDS YP_004657292.1 338213237 10872340 4389366..4390430 1 NC_015703.1 KEGG: sna:Snas_2969 hypothetical protein; SPTR: RDD domain containing protein; hypothetical protein 4390430 10872340 Runsl_3802 Runella slithyformis DSM 19594 hypothetical protein YP_004657292.1 4389366 D 761193 CDS YP_004657293.1 338213238 10872341 4390490..4391122 1 NC_015703.1 KEGG: ppn:Palpr_0095 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4391122 10872341 Runsl_3803 Runella slithyformis DSM 19594 hypothetical protein YP_004657293.1 4390490 D 761193 CDS YP_004657294.1 338213239 10872342 4391669..4393672 1 NC_015703.1 COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: sli:Slin_1477 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; PRIAM: D-amino-acid dehydrogenase; SPTR: FAD dependent oxidoreductase; hypothetical protein 4393672 10872342 Runsl_3804 Runella slithyformis DSM 19594 hypothetical protein YP_004657294.1 4391669 D 761193 CDS YP_004657295.1 338213240 10872343 4393926..4395173 1 NC_015703.1 PFAM: FAD dependent oxidoreductase; KEGG: sli:Slin_1922 hypothetical protein; SPTR: uncharacterized protein; D-amino-acid dehydrogenase 4395173 10872343 Runsl_3805 Runella slithyformis DSM 19594 D-amino-acid dehydrogenase YP_004657295.1 4393926 D 761193 CDS YP_004657296.1 338213241 10872344 complement(4395213..4395632) 1 NC_015703.1 COGs: COG3938 Proline racemase; InterPro IPR008794; KEGG: tsi:TSIB_0630 proline racemase; PFAM: Proline racemase; PRIAM: Proline racemase; SPTR: Proline racemase; hypothetical protein 4395632 10872344 Runsl_3806 Runella slithyformis DSM 19594 hypothetical protein YP_004657296.1 4395213 R 761193 CDS YP_004657297.1 338213242 10872345 4395776..4396831 1 NC_015703.1 PFAM: Proline racemase; COGs: COG2423 ornithine cyclodeaminase mu-crystallin homolog; InterPro IPR003462; KEGG: tro:trd_0794 ornithine cyclodeaminase; PFAM: Ornithine cyclodeaminase/mu-crystallin; PRIAM: Ornithine cyclodeaminase; SPTR: Ornithine cyclodeaminase/mu-crystallin family protein; proline racemase 4396831 10872345 Runsl_3807 Runella slithyformis DSM 19594 proline racemase YP_004657297.1 4395776 D 761193 CDS YP_004657298.1 338213243 10872346 4396940..4397920 1 NC_015703.1 PFAM: Ornithine cyclodeaminase/mu-crystallin family; COGs: COG0040 ATP phosphoribosyltransferase; HAMAP: ATP phosphoribosyltransferase; Histidine biosynthesis HisG, ATP phosphoribosyltransferase, subgroup; InterPro IPR020621:IPR013820:IPR013115; KEGG: sli:Slin_1783 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase, catalytic region; Histidine biosynthesis HisG, C-terminal; PRIAM: ATP phosphoribosyltransferase; SPTR: ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, catalytic region; Histidine biosynthesis HisG, C-terminal; ornithine cyclodeaminase 4397920 10872346 Runsl_3808 Runella slithyformis DSM 19594 ornithine cyclodeaminase YP_004657298.1 4396940 D 761193 CDS YP_004657299.1 338213244 10872347 4398224..4399078 1 NC_015703.1 PFAM: HisG, C-terminal domain; ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, C-terminal domain; ATP phosphoribosyltransferase; COGs: COG0141 Histidinol dehydrogenase; HAMAP: Histidinol dehydrogenase, prokaryotic-type; InterPro IPR012131; KEGG: sli:Slin_1784 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase, prokaryotic-type; PRIAM: Histidinol dehydrogenase; SPTR: Histidinol dehydrogenase; TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; ATP phosphoribosyltransferase 4399078 10872347 Runsl_3809 Runella slithyformis DSM 19594 ATP phosphoribosyltransferase YP_004657299.1 4398224 D 761193 CDS YP_004657300.1 338213245 10872348 4399149..4400417 1 NC_015703.1 PFAM: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; COGs: COG3950 ATP-binding protein involved in virulence; InterPro IPR003593; KEGG: sli:Slin_0641 ATPase AAA; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; histidinol dehydrogenase 4400417 10872348 Runsl_3810 Runella slithyformis DSM 19594 histidinol dehydrogenase YP_004657300.1 4399149 D 761193 CDS YP_004657301.1 338213246 10872349 4400508..4401872 1 NC_015703.1 PFAM: RecF/RecN/SMC N terminal domain; KEGG: spl:Spea_4172 hypothetical protein; SPTR: uncharacterized protein; ATPase AAA 4401872 10872349 Runsl_3811 Runella slithyformis DSM 19594 ATPase AAA YP_004657301.1 4400508 D 761193 CDS YP_004657302.1 338213247 10872350 4401869..4402294 1 NC_015703.1 hypothetical protein 4402294 10872350 Runsl_3812 Runella slithyformis DSM 19594 hypothetical protein YP_004657302.1 4401869 D 761193 CDS YP_004657303.1 338213248 10872351 complement(4402211..4402375) 1 NC_015703.1 COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; HAMAP: Histidinol-phosphate aminotransferase; InterPro IPR005861:IPR004839; KEGG: sli:Slin_1795 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/II; PRIAM: Histidinol-phosphate transaminase; SPTR: Histidinol-phosphate aminotransferase; TIGRFAM: Histidinol-phosphate aminotransferase; hypothetical protein 4402375 10872351 Runsl_3813 Runella slithyformis DSM 19594 hypothetical protein YP_004657303.1 4402211 R 761193 CDS YP_004657304.1 338213249 10872352 4402543..4403601 1 NC_015703.1 PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; KEGG: sli:Slin_1796 hypothetical protein; SPTR: uncharacterized protein; histidinol-phosphate aminotransferase 4403601 10872352 Runsl_3814 Runella slithyformis DSM 19594 histidinol-phosphate aminotransferase YP_004657304.1 4402543 D 761193 CDS YP_004657305.1 338213250 10872353 4403658..4404191 1 NC_015703.1 COGs: COG0240 Glycerol-3-phosphate dehydrogenase; InterPro IPR011128:IPR006109; KEGG: dfe:Dfer_2864 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal; NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; PRIAM: Glycerol-3-phosphate dehydrogenase (NAD(P)(+)); SPTR: Glycerol-3-phosphate dehydrogenase [NAD(P)+]; hypothetical protein 4404191 10872353 Runsl_3815 Runella slithyformis DSM 19594 hypothetical protein YP_004657305.1 4403658 D 761193 CDS YP_004657306.1 338213251 10872354 complement(4404312..4405301) 1 NC_015703.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; glycerol-3-phosphate dehydrogenase (NAD(P)(+)) 4405301 10872354 Runsl_3816 Runella slithyformis DSM 19594 glycerol-3-phosphate dehydrogenase (NAD(P)(+)) YP_004657306.1 4404312 R 761193 CDS YP_004657307.1 338213252 10872355 complement(4405378..4405503) 1 NC_015703.1 InterPro IPR011701; KEGG: sli:Slin_3636 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; hypothetical protein 4405503 10872355 Runsl_3817 Runella slithyformis DSM 19594 hypothetical protein YP_004657307.1 4405378 R 761193 CDS YP_004657308.1 338213253 10872356 4405527..4406885 1 NC_015703.1 PFAM: Major Facilitator Superfamily; InterPro IPR011467; KEGG: dfe:Dfer_3633 protein of unknown function DUF1573; PFAM: Protein of unknown function DUF1573; SPTR: uncharacterized protein; major facilitator superfamily protein 4406885 10872356 Runsl_3818 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004657308.1 4405527 D 761193 CDS YP_004657309.1 338213254 10872357 complement(4406989..4407369) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1573); COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: dfe:Dfer_3565 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase; hypothetical protein 4407369 10872357 Runsl_3819 Runella slithyformis DSM 19594 hypothetical protein YP_004657309.1 4406989 R 761193 CDS YP_004657310.1 338213255 10872358 4407584..4408831 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: dfe:Dfer_3566 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, winged helix family; integral membrane sensor signal transduction histidine kinase 4408831 10872358 Runsl_3820 Runella slithyformis DSM 19594 integral membrane sensor signal transduction histidine kinase YP_004657310.1 4407584 D 761193 CDS YP_004657311.1 338213256 10872359 4408931..4409629 1 NC_015703.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR003313:IPR000005:IPR018060; KEGG: phe:Phep_2431 AraC protein arabinose-binding/dimerisation; PFAM: Helix-turn-helix, AraC type; AraC protein, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator; winged helix family two component transcriptional regulator 4409629 10872359 Runsl_3821 Runella slithyformis DSM 19594 winged helix family two component transcriptional regulator YP_004657311.1 4408931 D 761193 CDS YP_004657312.1 338213257 10872360 complement(4409635..4410513) 1 NC_015703.1 PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2160 L-arabinose isomerase; KEGG: phe:Phep_2430 L-arabinose isomerase; SPTR: L-arabinose isomerase; AraC family transcriptional regulator 4410513 10872360 Runsl_3822 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004657312.1 4409635 R 761193 CDS YP_004657313.1 338213258 10872361 4410729..4412162 1 NC_015703.1 PFAM: L-arabinose isomerase; COGs: COG1066 ATP-dependent serine protease; InterPro IPR004504:IPR003593; KEGG: dfe:Dfer_4772 DNA repair protein RadA; SMART: ATPase, AAA+ type, core; SPTR: DNA repair protein radA; TIGRFAM: DNA repair protein RadA; L-arabinose isomerase 4412162 10872361 Runsl_3823 Runella slithyformis DSM 19594 L-arabinose isomerase YP_004657313.1 4410729 D 761193 CDS YP_004657314.1 338213259 10872362 complement(4412166..4413533) 1 NC_015703.1 PFAM: KaiC; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: DNA repair protein RadA; COGs: COG3967 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein); InterPro IPR002198; KEGG: cpi:Cpin_2130 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; DNA repair protein RadA 4413533 10872362 Runsl_3824 Runella slithyformis DSM 19594 DNA repair protein RadA YP_004657314.1 4412166 R 761193 CDS YP_004657315.1 338213260 10872363 complement(4413731..4414456) 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_2735 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; short-chain dehydrogenase/reductase SDR 4414456 10872363 Runsl_3825 Runella slithyformis DSM 19594 short-chain dehydrogenase/reductase SDR YP_004657315.1 4413731 R 761193 CDS YP_004657316.1 338213261 10872364 4414647..4415306 1 NC_015703.1 PFAM: ABC transporter; COGs: COG1373 ATPase (AAA+ superfamily); KEGG: pph:Ppha_2828 ATPase (AAA+ superfamily)-like protein; SPTR: uncharacterized protein; phosphonate-transporting ATPase 4415306 10872364 Runsl_3826 Runella slithyformis DSM 19594 phosphonate-transporting ATPase YP_004657316.1 4414647 D 761193 CDS YP_004657317.1 338213262 10872365 complement(4415431..4416879) 1 NC_015703.1 KEGG: chu:CHU_0806 hypothetical protein; SPTR: uncharacterized protein; ATPase -like protein 4416879 10872365 Runsl_3827 Runella slithyformis DSM 19594 ATPase -like protein YP_004657317.1 4415431 R 761193 CDS YP_004657318.1 338213263 10872366 complement(4417342..4417773) 1 NC_015703.1 KEGG: lby:Lbys_0957 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4417773 10872366 Runsl_3828 Runella slithyformis DSM 19594 hypothetical protein YP_004657318.1 4417342 R 761193 CDS YP_004657319.1 338213264 10872367 complement(4417766..4418221) 1 NC_015703.1 KEGG: lby:Lbys_0958 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4418221 10872367 Runsl_3829 Runella slithyformis DSM 19594 hypothetical protein YP_004657319.1 4417766 R 761193 CDS YP_004657320.1 338213265 10872368 complement(4418232..4418858) 1 NC_015703.1 KEGG: mtt:Ftrac_1316 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4418858 10872368 Runsl_3830 Runella slithyformis DSM 19594 hypothetical protein YP_004657320.1 4418232 R 761193 CDS YP_004657321.1 338213266 10872369 complement(4418939..4419310) 1 NC_015703.1 KEGG: chu:CHU_1451 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4419310 10872369 Runsl_3831 Runella slithyformis DSM 19594 hypothetical protein YP_004657321.1 4418939 R 761193 CDS YP_004657322.1 338213267 10872370 complement(4419568..4420191) 1 NC_015703.1 InterPro IPR000595; KEGG: lby:Lbys_0959 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding protein; hypothetical protein 4420191 10872370 Runsl_3832 Runella slithyformis DSM 19594 hypothetical protein YP_004657322.1 4419568 R 761193 CDS YP_004657323.1 338213268 10872371 complement(4420244..4420858) 1 NC_015703.1 PFAM: Cyclic nucleotide-binding domain; InterPro IPR011637; KEGG: phe:Phep_1775 DoxX family protein; PFAM: DoxX; SPTR: DoxX family protein; cyclic nucleotide-binding protein 4420858 10872371 Runsl_3833 Runella slithyformis DSM 19594 cyclic nucleotide-binding protein YP_004657323.1 4420244 R 761193 CDS YP_004657324.1 338213269 10872372 complement(4421043..4421483) 1 NC_015703.1 PFAM: DoxX; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: shg:Sph21_2105 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; DoxX family protein 4421483 10872372 Runsl_3834 Runella slithyformis DSM 19594 DoxX family protein YP_004657324.1 4421043 R 761193 CDS YP_004657325.1 338213270 10872373 complement(4421709..4422290) 1 NC_015703.1 PFAM: Cyclic nucleotide-binding domain; COGs: COG2312 Erythromycin esterase homolog; InterPro IPR007815; KEGG: lsp:Bsph_4494 erythromycin esterase-like protein; PFAM: Erythromycin esterase; SPTR: Erythromycin esterase-like protein; Crp/Fnr family transcriptional regulator 4422290 10872373 Runsl_3835 Runella slithyformis DSM 19594 Crp/Fnr family transcriptional regulator YP_004657325.1 4421709 R 761193 CDS YP_004657326.1 338213271 10872374 complement(4422345..4423655) 1 NC_015703.1 PFAM: Erythromycin esterase; InterPro IPR013096; KEGG: rxy:Rxyl_0884 cupin 2, barrel; PFAM: Cupin 2, conserved barrel; SPTR: Cupin 2 conserved barrel domain protein; erythromycin esterase 4423655 10872374 Runsl_3836 Runella slithyformis DSM 19594 erythromycin esterase YP_004657326.1 4422345 R 761193 CDS YP_004657327.1 338213272 10872375 complement(4423827..4424384) 1 NC_015703.1 PFAM: Cupin domain; cupin 4424384 10872375 Runsl_3837 Runella slithyformis DSM 19594 cupin YP_004657327.1 4423827 R 761193 CDS YP_004657328.1 338213273 10872376 complement(4424420..4424707) 1 NC_015703.1 KEGG: nhl:Nhal_3969 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4424707 10872376 Runsl_3838 Runella slithyformis DSM 19594 hypothetical protein YP_004657328.1 4424420 R 761193 CDS YP_004657329.1 338213274 10872377 complement(4424713..4425048) 1 NC_015703.1 InterPro IPR018306; KEGG: dol:Dole_0905 restriction enzyme; PFAM: helicase A859L; SPTR: restriction enzyme; hypothetical protein 4425048 10872377 Runsl_3839 Runella slithyformis DSM 19594 hypothetical protein YP_004657329.1 4424713 R 761193 CDS YP_004657330.1 338213275 10872378 complement(4425050..4427791) 1 NC_015703.1 PFAM: T5orf172 domain; InterPro IPR011639; KEGG: atm:ANT_31690 hypothetical protein; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: uncharacterized protein; helicase A859L 4427791 10872378 Runsl_3840 Runella slithyformis DSM 19594 helicase A859L YP_004657330.1 4425050 R 761193 CDS YP_004657331.1 338213276 10872379 complement(4427772..4429292) 1 NC_015703.1 PFAM: Eco57I restriction endonuclease; KEGG: dol:Dole_0903 type III restriction system methylase; SPTR: Type III restriction system methylase; adenine-specific DNA methyltransferase 4429292 10872379 Runsl_3841 Runella slithyformis DSM 19594 adenine-specific DNA methyltransferase YP_004657331.1 4427772 R 761193 CDS YP_004657332.1 338213277 10872380 complement(4429273..4429944) 1 NC_015703.1 InterPro IPR010394; KEGG: sli:Slin_5585 5'-nucleotidase; PFAM: 5-nucleotidase; PRIAM: 5'-nucleotidase; SPTR: 5'-nucleotidase; type III restriction system methylase 4429944 10872380 Runsl_3842 Runella slithyformis DSM 19594 type III restriction system methylase YP_004657332.1 4429273 R 761193 CDS YP_004657333.1 338213278 10872381 complement(4429922..4430881) 1 NC_015703.1 PFAM: 5'-nucleotidase; COGs: COG3324 protein related to lactoylglutathione lyase; InterPro IPR004360; KEGG: gvi:glr1565 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase; 5'-nucleotidase 4430881 10872381 Runsl_3843 Runella slithyformis DSM 19594 5'-nucleotidase YP_004657333.1 4429922 R 761193 CDS YP_004657334.1 338213279 10872382 complement(4431185..4431673) 1 NC_015703.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG2958 conserved hypothetical protein; InterPro IPR007468; KEGG: cch:Cag_1717 hypothetical protein; PFAM: Protein of unknown function DUF511; SPTR: uncharacterized protein; Glyoxalase/bleomycin resistance protein/dioxygenase 4431673 10872382 Runsl_3844 Runella slithyformis DSM 19594 Glyoxalase/bleomycin resistance protein/dioxygenase YP_004657334.1 4431185 R 761193 CDS YP_004657335.1 338213280 10872383 complement(4431885..4432802) 1 NC_015703.1 PFAM: Protein of unknown function (DUF511); InterPro IPR001387; KEGG: dfe:Dfer_2636 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; hypothetical protein 4432802 10872383 Runsl_3845 Runella slithyformis DSM 19594 hypothetical protein YP_004657335.1 4431885 R 761193 CDS YP_004657336.1 338213281 10872384 complement(4432927..4434423) 1 NC_015703.1 PFAM: Helix-turn-helix; COGs: COG0146 N-methylhydantoinase B/acetone carboxylase alpha subunit; InterPro IPR008040:IPR002821:IPR003692; KEGG: dfe:Dfer_4282 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase; Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal; PRIAM: 5-oxoprolinase (ATP-hydrolyzing); SPTR: 5-oxoprolinase (ATP-hydrolyzing); helix-turn-helix domain-containing protein 4434423 10872384 Runsl_3846 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004657336.1 4432927 R 761193 CDS YP_004657337.1 338213282 10872385 complement(4434480..4438220) 1 NC_015703.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinase/oxoprolinase N-terminal region; InterPro IPR019860; KEGG: sli:Slin_6627 gliding motility-associated ABC transporter permease GldF; SPTR: Gliding motility-associated ABC transporter permease GldF; TIGRFAM: Gliding motility-associated ABC transporter permease GldF; 5-oxoprolinase 4438220 10872385 Runsl_3847 Runella slithyformis DSM 19594 5-oxoprolinase YP_004657337.1 4434480 R 761193 CDS YP_004657338.1 338213283 10872386 complement(4438329..4439057) 1 NC_015703.1 TIGRFAM: gliding motility-associated ABC transporter permease GldF; KEGG: dfe:Dfer_4469 hypothetical protein; SPTR: uncharacterized protein; gliding motility-associated ABC transporter permease GldF 4439057 10872386 Runsl_3848 Runella slithyformis DSM 19594 gliding motility-associated ABC transporter permease GldF YP_004657338.1 4438329 R 761193 CDS YP_004657339.1 338213284 10872387 complement(4439102..4439620) 1 NC_015703.1 COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_4049 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; hypothetical protein 4439620 10872387 Runsl_3849 Runella slithyformis DSM 19594 hypothetical protein YP_004657339.1 4439102 R 761193 CDS YP_004657340.1 338213285 10872388 complement(4439746..4440480) 1 NC_015703.1 PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter; COGs: COG0608 Single-stranded DNA-specific exonuclease; InterPro IPR004610:IPR001667:IPR003156; KEGG: dfe:Dfer_4050 single-stranded-DNA-specific exonuclease RecJ; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; SPTR: Single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; sulfate-transporting ATPase 4440480 10872388 Runsl_3850 Runella slithyformis DSM 19594 sulfate-transporting ATPase YP_004657340.1 4439746 R 761193 CDS YP_004657341.1 338213286 10872389 complement(4440587..4442332) 1 NC_015703.1 PFAM: DHH family; DHHA1 domain; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; COGs: COG1748 Saccharopine dehydrogenase and related protein; InterPro IPR005097; KEGG: dfe:Dfer_5033 saccharopine dehydrogenase; PFAM: Saccharopine dehydrogenase; SPTR: Saccharopine dehydrogenase; single-stranded-DNA-specific exonuclease RecJ 4442332 10872389 Runsl_3851 Runella slithyformis DSM 19594 single-stranded-DNA-specific exonuclease RecJ YP_004657341.1 4440587 R 761193 CDS YP_004657342.1 338213287 10872390 4442711..4443772 1 NC_015703.1 PFAM: Saccharopine dehydrogenase; InterPro IPR008000; KEGG: sli:Slin_0311 hypothetical protein; PFAM: Rhamnose mutarotase; SPTR: uncharacterized protein; saccharopine dehydrogenase 4443772 10872390 Runsl_3852 Runella slithyformis DSM 19594 saccharopine dehydrogenase YP_004657342.1 4442711 D 761193 CDS YP_004657343.1 338213288 10872391 complement(4443816..4444148) 1 NC_015703.1 PFAM: Domain of unknown function (DUF718); KEGG: sli:Slin_2214 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4444148 10872391 Runsl_3853 Runella slithyformis DSM 19594 hypothetical protein YP_004657343.1 4443816 R 761193 CDS YP_004657344.1 338213289 10872392 complement(4444337..4444930) 1 NC_015703.1 InterPro IPR012489; KEGG: sli:Slin_2215 nuclease A inhibitor; PFAM: Nuclease A inhibitor-like; SPTR: Nuclease A inhibitor family protein; hypothetical protein 4444930 10872392 Runsl_3854 Runella slithyformis DSM 19594 hypothetical protein YP_004657344.1 4444337 R 761193 CDS YP_004657345.1 338213290 10872393 4444980..4445435 1 NC_015703.1 PFAM: Nuclease A inhibitor-like protein; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: fbc:FB2170_10611 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; PRIAM: Aldehyde dehydrogenase (NADP(+)); SPTR: Aldehyde dehydrogenase; Nuclease A inhibitor family protein 4445435 10872393 Runsl_3855 Runella slithyformis DSM 19594 Nuclease A inhibitor family protein YP_004657345.1 4444980 D 761193 CDS YP_004657346.1 338213291 10872394 4445481..4446959 1 NC_015703.1 PFAM: Aldehyde dehydrogenase; aldehyde dehydrogenase 4446959 10872394 Runsl_3856 Runella slithyformis DSM 19594 aldehyde dehydrogenase YP_004657346.1 4445481 D 761193 CDS YP_004657347.1 338213292 10872395 complement(4446956..4447372) 1 NC_015703.1 KEGG: sli:Slin_5814 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4447372 10872395 Runsl_3857 Runella slithyformis DSM 19594 hypothetical protein YP_004657347.1 4446956 R 761193 CDS YP_004657348.1 338213293 10872396 complement(4447381..4447779) 1 NC_015703.1 KEGG: sli:Slin_1358 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4447779 10872396 Runsl_3858 Runella slithyformis DSM 19594 hypothetical protein YP_004657348.1 4447381 R 761193 CDS YP_004657349.1 338213294 10872397 4447860..4448717 1 NC_015703.1 manually curated; hypothetical protein 4448717 10872397 Runsl_3859 Runella slithyformis DSM 19594 hypothetical protein YP_004657349.1 4447860 D 761193 CDS YP_004657350.1 338213295 10872399 4449987..4457285 1 NC_015703.1 PFAM: Cna protein B-type domain; KEGG: sli:Slin_1897 hypothetical protein; SPTR: uncharacterized protein; Cna B domain-containing protein 4457285 10872399 Runsl_3861 Runella slithyformis DSM 19594 Cna B domain-containing protein YP_004657350.1 4449987 D 761193 CDS YP_004657351.1 338213296 10872400 complement(4457415..4458437) 1 NC_015703.1 COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: sli:Slin_3201 cell cycle protein; PFAM: Cell cycle protein; SPTR: Cell cycle protein; hypothetical protein 4458437 10872400 Runsl_3862 Runella slithyformis DSM 19594 hypothetical protein YP_004657351.1 4457415 R 761193 CDS YP_004657352.1 338213297 10872401 complement(4458502..4459785) 1 NC_015703.1 PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR017790:IPR005311:IPR001460; KEGG: dfe:Dfer_2015 penicillin-binding protein 2; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Penicillin-binding protein 2; TIGRFAM: Penicillin-binding protein 2; cell cycle protein 4459785 10872401 Runsl_3863 Runella slithyformis DSM 19594 cell cycle protein YP_004657352.1 4458502 R 761193 CDS YP_004657353.1 338213298 10872402 complement(4459881..4461797) 1 NC_015703.1 PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2; COGs: COG3386 Gluconolactonase; InterPro IPR013658; KEGG: dfe:Dfer_2426 gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region; PRIAM: Gluconolactonase; SPTR: Gluconolactonase; penicillin-binding protein 2 4461797 10872402 Runsl_3864 Runella slithyformis DSM 19594 penicillin-binding protein 2 YP_004657353.1 4459881 R 761193 CDS YP_004657354.1 338213299 10872403 complement(4461982..4462992) 1 NC_015703.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: sli:Slin_3605 lipoprotein; SPTR: lipoprotein; gluconolactonase 4462992 10872403 Runsl_3865 Runella slithyformis DSM 19594 gluconolactonase YP_004657354.1 4461982 R 761193 CDS YP_004657355.1 338213300 10872404 complement(4463140..4463916) 1 NC_015703.1 COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR010231:IPR000825; KEGG: dfe:Dfer_2575 cysteine desulfurase activator complex subunit SufB; PFAM: SUF system FeS cluster assembly, SufBD; SPTR: FeS assembly protein SufB; TIGRFAM: SUF system FeS cluster assembly, SufB; lipoprotein 4463916 10872404 Runsl_3866 Runella slithyformis DSM 19594 lipoprotein YP_004657355.1 4463140 R 761193 CDS YP_004657356.1 338213301 10872405 4464435..4465880 1 NC_015703.1 PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB; COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR010046:IPR006656:IPR006657; KEGG: dfe:Dfer_2667 oxidoreductase alpha (molybdopterin) subunit; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding region; PRIAM: Nitrate reductase; SPTR: Oxidoreductase alpha (Molybdopterin) subunit; TIGRFAM: Oxidoreductase alpha (molybdopterin) subunit; FeS assembly protein SufB 4465880 10872405 Runsl_3867 Runella slithyformis DSM 19594 FeS assembly protein SufB YP_004657356.1 4464435 D 761193 CDS YP_004657357.1 338213302 10872406 4465983..4468283 1 NC_015703.1 PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; InterPro IPR008009:IPR006644; KEGG: dfe:Dfer_3550 dystroglycan-type cadherin domain protein; PFAM: Ig; SMART: Dystroglycan-type cadherin-like; SPTR: Dystroglycan-type cadherin domain protein; oxidoreductase alpha (molybdopterin) subunit 4468283 10872406 Runsl_3868 Runella slithyformis DSM 19594 oxidoreductase alpha (molybdopterin) subunit YP_004657357.1 4465983 D 761193 CDS YP_004657358.1 338213303 10872407 4468533..4472279 1 NC_015703.1 PFAM: Beta-galactosidase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: dfe:Dfer_4066 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; Ig family protein 4472279 10872407 Runsl_3869 Runella slithyformis DSM 19594 Ig family protein YP_004657358.1 4468533 D 761193 CDS YP_004657359.1 338213304 10872408 complement(4472355..4473701) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: dfe:Dfer_4067 protein of unknown function DUF323; PFAM: Sulphatase-modifying factor; SPTR: uncharacterized protein; oxidoreductase domain-containing protein 4473701 10872408 Runsl_3870 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004657359.1 4472355 R 761193 CDS YP_004657360.1 338213305 10872409 complement(4473868..4474854) 1 NC_015703.1 PFAM: Formylglycine-generating sulfatase enzyme; KEGG: sli:Slin_5366 hypothetical protein; SPTR: uncharacterized protein; sulfatase-modifying factor protein 4474854 10872409 Runsl_3871 Runella slithyformis DSM 19594 sulfatase-modifying factor protein YP_004657360.1 4473868 R 761193 CDS YP_004657361.1 338213306 10872410 complement(4474924..4476591) 1 NC_015703.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: sli:Slin_5365 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; hypothetical protein 4476591 10872410 Runsl_3872 Runella slithyformis DSM 19594 hypothetical protein YP_004657361.1 4474924 R 761193 CDS YP_004657362.1 338213307 10872411 complement(4476628..4477404) 1 NC_015703.1 PFAM: ABC transporter; COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR003953; KEGG: psn:Pedsa_1775 FAD dependent oxidoreductase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; SPTR: FAD dependent oxidoreductase; ABC transporter 4477404 10872411 Runsl_3873 Runella slithyformis DSM 19594 ABC transporter YP_004657362.1 4476628 R 761193 CDS YP_004657363.1 338213308 10872412 complement(4477404..4478519) 1 NC_015703.1 PFAM: FAD binding domain; COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: dfe:Dfer_2887 glucose/sorbosone dehydrogenase-like protein; SPTR: Glucose/sorbosone dehydrogenase-like protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 4478519 10872412 Runsl_3874 Runella slithyformis DSM 19594 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_004657363.1 4477404 R 761193 CDS YP_004657364.1 338213309 10872413 4478684..4479874 1 NC_015703.1 PFAM: Glucose / Sorbosone dehydrogenase; COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006158:IPR005129:IPR006099; KEGG: sli:Slin_2256 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding; ArgK protein; PRIAM: Methylmalonyl-CoA mutase; SPTR: Methylmalonyl-CoA mutase; glucose/sorbosone dehydrogenase-like protein 4479874 10872413 Runsl_3875 Runella slithyformis DSM 19594 glucose/sorbosone dehydrogenase-like protein YP_004657364.1 4478684 D 761193 CDS YP_004657365.1 338213310 10872414 4479929..4483357 1 NC_015703.1 PFAM: ArgK protein; Methylmalonyl-CoA mutase; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase C-terminal domain; COGs: COG0858 Ribosome-binding factor A; HAMAP: Ribosome-binding factor A; InterPro IPR000238; KEGG: sli:Slin_0998 ribosome-binding factor A; PFAM: Ribosome-binding factor A; SPTR: Ribosome-binding factor A; TIGRFAM: Ribosome-binding factor A; methylmalonyl-CoA mutase 4483357 10872414 Runsl_3876 Runella slithyformis DSM 19594 methylmalonyl-CoA mutase YP_004657365.1 4479929 D 761193 CDS YP_004657366.1 338213311 10872415 4483658..4484035 1 NC_015703.1 PFAM: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; COGs: COG0077 Prephenate dehydratase; InterPro IPR010957:IPR020822:IPR001086:IPR002912; KEGG: lby:Lbys_0057 chorismate mutase; prephenate dehydratase; PFAM: Prephenate dehydratase; Chorismate mutase, type II; Amino acid-binding ACT; SPTR: Chorismate mutase; prephenate dehydratase; TIGRFAM: Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain; ribosome-binding factor A 4484035 10872415 Runsl_3877 Runella slithyformis DSM 19594 ribosome-binding factor A YP_004657366.1 4483658 D 761193 CDS YP_004657367.1 338213312 10872416 4484120..4485193 1 NC_015703.1 PFAM: Prephenate dehydratase; Chorismate mutase type II; ACT domain; TIGRFAM: chorismate mutase domain of proteobacterial P-protein, clade 2; COGs: COG0073 EMAP domain; InterPro IPR008231:IPR002547; KEGG: shg:Sph21_1068 export-related chaperone CsaA; PFAM: tRNA-binding region; SPTR: Export-related chaperone CsaA; TIGRFAM: Secretion chaperone CsaA; chorismate mutase 4485193 10872416 Runsl_3878 Runella slithyformis DSM 19594 chorismate mutase YP_004657367.1 4484120 D 761193 CDS YP_004657368.1 338213313 10872417 4485226..4485561 1 NC_015703.1 PFAM: tRNA binding domain; TIGRFAM: export-related chaperone CsaA; COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015883; KEGG: sli:Slin_4336 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Beta-N-acetylhexosaminidase; export-related chaperone CsaA 4485561 10872417 Runsl_3879 Runella slithyformis DSM 19594 export-related chaperone CsaA YP_004657368.1 4485226 D 761193 CDS YP_004657369.1 338213314 10872418 4485597..4487261 1 NC_015703.1 PFAM: Glycosyl hydrolase 20, catalytic domain; KEGG: dfe:Dfer_2584 hypothetical protein; SPTR: uncharacterized protein; beta-N-acetylhexosaminidase 4487261 10872418 Runsl_3880 Runella slithyformis DSM 19594 beta-N-acetylhexosaminidase YP_004657369.1 4485597 D 761193 CDS YP_004657370.1 338213315 10872419 4487345..4488826 1 NC_015703.1 Bacterial RNase P class A as predicted by Rfam (RF00010), score 236.30; hypothetical protein 4488826 10872419 Runsl_3881 Runella slithyformis DSM 19594 hypothetical protein YP_004657370.1 4487345 D 761193 CDS YP_004657371.1 338213316 10872421 4489391..4490956 1 NC_015703.1 PFAM: OmpA family; COGs: COG4188 dienelactone hydrolase; KEGG: sli:Slin_3493 dienelactone hydrolase-like protein; SPTR: Dienelactone hydrolase-like protein; OmpA/MotB domain-containing protein 4490956 10872421 Runsl_3882 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004657371.1 4489391 D 761193 CDS YP_004657372.1 338213317 10872422 complement(4491209..4492495) 1 NC_015703.1 PFAM: isoform II; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_6424 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; dienelactone hydrolase-like protein 4492495 10872422 Runsl_3883 Runella slithyformis DSM 19594 dienelactone hydrolase-like protein YP_004657372.1 4491209 R 761193 CDS YP_004657373.1 338213318 10872423 complement(4492705..4493430) 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_6424 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; LytTR family two component transcriptional regulator 4493430 10872423 Runsl_3884 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004657373.1 4492705 R 761193 CDS YP_004657374.1 338213319 10872424 complement(4494162..4494887) 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; KEGG: sli:Slin_5589 phage repressor; SPTR: phage repressor; LytTR family two component transcriptional regulator 4494887 10872424 Runsl_3885 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004657374.1 4494162 R 761193 CDS YP_004657375.1 338213320 10872425 complement(4495605..4496276) 1 NC_015703.1 phage repressor 4496276 10872425 Runsl_3886 Runella slithyformis DSM 19594 phage repressor YP_004657375.1 4495605 R 761193 CDS YP_004657376.1 338213321 10872426 4496396..4496719 1 NC_015703.1 InterPro IPR010093; TIGRFAM: Excisionase/Xis, DNA-binding; hypothetical protein 4496719 10872426 Runsl_3887 Runella slithyformis DSM 19594 hypothetical protein YP_004657376.1 4496396 D 761193 CDS YP_004657377.1 338213322 10872427 4496688..4496975 1 NC_015703.1 TIGRFAM: DNA binding domain, excisionase; excisionase 4496975 10872427 Runsl_3888 Runella slithyformis DSM 19594 excisionase YP_004657377.1 4496688 D 761193 CDS YP_004657378.1 338213323 10872428 4496953..4497783 1 NC_015703.1 KEGG: fps:FP0626 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4497783 10872428 Runsl_3889 Runella slithyformis DSM 19594 hypothetical protein YP_004657378.1 4496953 D 761193 CDS YP_004657379.1 338213324 10872429 4497780..4498157 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 4498157 10872429 Runsl_3890 Runella slithyformis DSM 19594 hypothetical protein YP_004657379.1 4497780 D 761193 CDS YP_004657380.1 338213325 10872431 4498610..4498921 1 NC_015703.1 COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR004546:IPR003356:IPR000055; KEGG: ana:alr0499 type I site-specific deoxyribonuclease; PFAM: DNA methylase, adenine-specific; Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Type I site-specific deoxyribonuclease; TIGRFAM: Restriction endonuclease, type I, EcoRI, M subunit; hypothetical protein 4498921 10872431 Runsl_3892 Runella slithyformis DSM 19594 hypothetical protein YP_004657380.1 4498610 D 761193 CDS YP_004657381.1 338213326 10872432 4499204..4501405 1 NC_015703.1 PFAM: N-6 DNA Methylase; Type I restriction modification DNA specificity domain; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM); COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR004473:IPR007409:IPR006935:IPR014001; KEGG: dfe:Dfer_5242 type I site-specific deoxyribonuclease, HsdR family; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; PRIAM: Type I site-specific deoxyribonuclease; SMART: DEAD-like helicase, N-terminal; SPTR: Type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; type I restriction-modification system, M subunit 4501405 10872432 Runsl_3893 Runella slithyformis DSM 19594 type I restriction-modification system, M subunit YP_004657381.1 4499204 D 761193 CDS YP_004657382.1 338213327 10872433 4501508..4504345 1 NC_015703.1 PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type I restriction and modification enzyme - subunit R C terminal; Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; KEGG: sun:SUN_2300 hypothetical protein; SPTR: uncharacterized protein; HsdR family type I site-specific deoxyribonuclease 4504345 10872433 Runsl_3894 Runella slithyformis DSM 19594 HsdR family type I site-specific deoxyribonuclease YP_004657382.1 4501508 D 761193 CDS YP_004657383.1 338213328 10872434 complement(4505678..4506070) 1 NC_015703.1 PFAM: Protein of unknown function (DUF2493); hypothetical protein 4506070 10872434 Runsl_3895 Runella slithyformis DSM 19594 hypothetical protein YP_004657383.1 4505678 R 761193 CDS YP_004657384.1 338213329 10872435 4506260..4506520 1 NC_015703.1 hypothetical protein 4506520 10872435 Runsl_3896 Runella slithyformis DSM 19594 hypothetical protein YP_004657384.1 4506260 D 761193 CDS YP_004657385.1 338213330 10872436 4506517..4506753 1 NC_015703.1 InterPro IPR014944; PFAM: Protein of unknown function DUF1813, HSP20-like; hypothetical protein 4506753 10872436 Runsl_3897 Runella slithyformis DSM 19594 hypothetical protein YP_004657385.1 4506517 D 761193 CDS YP_004657386.1 338213331 10872437 4506737..4506913 1 NC_015703.1 PFAM: HSP20-like domain of unknown function (DUF1813); KEGG: sli:Slin_4186 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4506913 10872437 Runsl_3898 Runella slithyformis DSM 19594 hypothetical protein YP_004657386.1 4506737 D 761193 CDS YP_004657387.1 338213332 10872438 4506980..4507594 1 NC_015703.1 hypothetical protein 4507594 10872438 Runsl_3899 Runella slithyformis DSM 19594 hypothetical protein YP_004657387.1 4506980 D 761193 CDS YP_004657388.1 338213333 10872439 4507599..4507766 1 NC_015703.1 hypothetical protein 4507766 10872439 Runsl_3900 Runella slithyformis DSM 19594 hypothetical protein YP_004657388.1 4507599 D 761193 CDS YP_004657389.1 338213334 10872440 4507822..4508076 1 NC_015703.1 KEGG: sli:Slin_6908 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4508076 10872440 Runsl_3901 Runella slithyformis DSM 19594 hypothetical protein YP_004657389.1 4507822 D 761193 CDS YP_004657390.1 338213335 10872441 4508101..4508751 1 NC_015703.1 hypothetical protein 4508751 10872441 Runsl_3902 Runella slithyformis DSM 19594 hypothetical protein YP_004657390.1 4508101 D 761193 CDS YP_004657391.1 338213336 10872442 4508921..4509313 1 NC_015703.1 hypothetical protein 4509313 10872442 Runsl_3903 Runella slithyformis DSM 19594 hypothetical protein YP_004657391.1 4508921 D 761193 CDS YP_004657392.1 338213337 10872443 4509310..4509579 1 NC_015703.1 KEGG: fjo:Fjoh_3184 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4509579 10872443 Runsl_3904 Runella slithyformis DSM 19594 hypothetical protein YP_004657392.1 4509310 D 761193 CDS YP_004657393.1 338213338 10872444 complement(4511613..4512347) 1 NC_015703.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: fjo:Fjoh_2324 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Helix-turn-helix-domain containing protein, AraC type; manually curated; hypothetical protein 4512347 10872444 Runsl_3905 Runella slithyformis DSM 19594 hypothetical protein YP_004657393.1 4511613 R 761193 CDS YP_004657394.1 338213339 10872445 complement(4512600..4513517) 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: cpi:Cpin_0969 hypothetical protein; SPTR: uncharacterized protein; AraC family transcriptional regulator 4513517 10872445 Runsl_3906 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004657394.1 4512600 R 761193 CDS YP_004657395.1 338213340 10872446 complement(4513595..4513963) 1 NC_015703.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: ana:alr1722 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Alr1722 protein; hypothetical protein 4513963 10872446 Runsl_3907 Runella slithyformis DSM 19594 hypothetical protein YP_004657395.1 4513595 R 761193 CDS YP_004657396.1 338213341 10872447 complement(4513965..4514888) 1 NC_015703.1 PFAM: short chain dehydrogenase; KEGG: amr:AM1_D0068 hypothetical protein; SPTR: uncharacterized protein; short-chain dehydrogenase/reductase SDR 4514888 10872447 Runsl_3908 Runella slithyformis DSM 19594 short-chain dehydrogenase/reductase SDR YP_004657396.1 4513965 R 761193 CDS YP_004657397.1 338213342 10872448 complement(4515274..4516110) 1 NC_015703.1 hypothetical protein 4516110 10872448 Runsl_3909 Runella slithyformis DSM 19594 hypothetical protein YP_004657397.1 4515274 R 761193 CDS YP_004657398.1 338213343 10872449 4516211..4516462 1 NC_015703.1 COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase); InterPro IPR019759; KEGG: chu:CHU_3076 SOS mutagenesis protein UmuD; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: SOS response UmuD protein, Serine peptidase, MEROPS family S24; hypothetical protein 4516462 10872449 Runsl_3910 Runella slithyformis DSM 19594 hypothetical protein YP_004657398.1 4516211 D 761193 CDS YP_004657399.1 338213344 10872450 4516530..4516979 1 NC_015703.1 PFAM: Peptidase S24-like; COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; InterPro IPR001126; KEGG: ppn:Palpr_2947 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like; PRIAM: DNA-directed DNA polymerase; SPTR: DNA-directed DNA polymerase; peptidase S24/S26A/S26B, conserved region 4516979 10872450 Runsl_3911 Runella slithyformis DSM 19594 peptidase S24/S26A/S26B, conserved region YP_004657399.1 4516530 D 761193 CDS YP_004657400.1 338213345 10872451 4516981..4518249 1 NC_015703.1 PFAM: impB/mucB/samB family C-terminal; impB/mucB/samB family; KEGG: aae:aq_561 recombination protein RecN; DNA-directed DNA polymerase 4518249 10872451 Runsl_3912 Runella slithyformis DSM 19594 DNA-directed DNA polymerase YP_004657400.1 4516981 D 761193 CDS YP_004657401.1 338213346 10872452 complement(4518339..4519049) 1 NC_015703.1 KEGG: chu:CHU_0033 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4519049 10872452 Runsl_3913 Runella slithyformis DSM 19594 hypothetical protein YP_004657401.1 4518339 R 761193 CDS YP_004657402.1 338213347 10872453 complement(4519243..4521459) 1 NC_015703.1 hypothetical protein 4521459 10872453 Runsl_3914 Runella slithyformis DSM 19594 hypothetical protein YP_004657402.1 4519243 R 761193 CDS YP_004657403.1 338213348 10872454 4521558..4521653 1 NC_015703.1 hypothetical protein 4521653 10872454 Runsl_3915 Runella slithyformis DSM 19594 hypothetical protein YP_004657403.1 4521558 D 761193 CDS YP_004657404.1 338213349 10872455 complement(4521623..4521913) 1 NC_015703.1 COGs: COG1988 membrane-bound metal-dependent hydrolase; InterPro IPR007404; KEGG: gca:Galf_0876 membrane-bound metal-dependent hydrolase; PFAM: Protein of unknown function DUF457, transmembrane; SPTR: uncharacterized protein; hypothetical protein 4521913 10872455 Runsl_3916 Runella slithyformis DSM 19594 hypothetical protein YP_004657404.1 4521623 R 761193 CDS YP_004657405.1 338213350 10872456 4521996..4523252 1 NC_015703.1 PFAM: Predicted membrane-bound metal-dependent hydrolase (DUF457); COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104:IPR011579; KEGG: sgy:Sgly_2273 tyrosine recombinase XerC; PFAM: Integrase, catalytic core, phage; ATPase domain, prokaryote; SPTR: Tyrosine recombinase xerC 2; hypothetical protein 4523252 10872456 Runsl_3917 Runella slithyformis DSM 19594 hypothetical protein YP_004657405.1 4521996 D 761193 CDS YP_004657406.1 338213351 10872457 4523236..4524756 1 NC_015703.1 PFAM: Phage integrase; COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119:IPR006120; KEGG: sli:Slin_4835 resolvase; PFAM: Resolvase, N-terminal; Resolvase, helix-turn-helix region; SPTR: Resolvase domain protein; integrase 4524756 10872457 Runsl_3918 Runella slithyformis DSM 19594 integrase YP_004657406.1 4523236 D 761193 CDS YP_004657407.1 338213352 10872458 4524905..4525483 1 NC_015703.1 PFAM: Resolvase, N terminal domain; Helix-turn-helix domain of resolvase; resolvase domain-containing protein 4525483 10872458 Runsl_3919 Runella slithyformis DSM 19594 resolvase domain-containing protein YP_004657407.1 4524905 D 761193 CDS YP_004657408.1 338213353 10872459 4525503..4525769 1 NC_015703.1 hypothetical protein 4525769 10872459 Runsl_3920 Runella slithyformis DSM 19594 hypothetical protein YP_004657408.1 4525503 D 761193 CDS YP_004657409.1 338213354 10872460 4525869..4526633 1 NC_015703.1 SPTR: Phage integrase; manually curated; hypothetical protein 4526633 10872460 Runsl_3921 Runella slithyformis DSM 19594 hypothetical protein YP_004657409.1 4525869 D 761193 CDS YP_004657410.1 338213355 10872463 complement(4528194..4529069) 1 NC_015703.1 PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; COGs: COG3011 conserved hypothetical protein; InterPro IPR007263; KEGG: chu:CHU_2470 hypothetical protein; PFAM: thiol-disulphide oxidoreductase DCC; SPTR: uncharacterized protein; malonyl CoA-ACP transacylase 4529069 10872463 Runsl_3923 Runella slithyformis DSM 19594 malonyl CoA-ACP transacylase YP_004657410.1 4528194 R 761193 CDS YP_004657411.1 338213356 10872464 complement(4529131..4529526) 1 NC_015703.1 PFAM: Protein of unknown function, DUF393; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: sli:Slin_3597 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23; manually curated; thiol-disulfide oxidoreductase 4529526 10872464 Runsl_3924 Runella slithyformis DSM 19594 thiol-disulfide oxidoreductase YP_004657411.1 4529131 R 761193 CDS YP_004657412.1 338213357 10872465 4529730..4530410 1 NC_015703.1 PFAM: Peptidase M23; COGs: COG2996 conserved hypothetical protein; KEGG: bsa:Bacsa_3338 hypothetical protein; SPTR: uncharacterized protein; peptidase M23 4530410 10872465 Runsl_3925 Runella slithyformis DSM 19594 peptidase M23 YP_004657412.1 4529730 D 761193 CDS YP_004657413.1 338213358 10872466 4530552..4531391 1 NC_015703.1 InterPro IPR006311:IPR006076; KEGG: dfe:Dfer_4743 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase; hypothetical protein 4531391 10872466 Runsl_3926 Runella slithyformis DSM 19594 hypothetical protein YP_004657413.1 4530552 D 761193 CDS YP_004657414.1 338213359 10872467 complement(4531578..4532726) 1 NC_015703.1 PFAM: FAD dependent oxidoreductase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; InterPro IPR006175; KEGG: gym:GYMC10_0704 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP; FAD dependent oxidoreductase 4532726 10872467 Runsl_3927 Runella slithyformis DSM 19594 FAD dependent oxidoreductase YP_004657414.1 4531578 R 761193 CDS YP_004657415.1 338213360 10872468 4532906..4533397 1 NC_015703.1 PFAM: Endoribonuclease L-PSP; COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR011650; KEGG: sli:Slin_4763 amidohydrolase; PFAM: Peptidase M20, dimerisation; SPTR: Amidohydrolase; endoribonuclease L-PSP 4533397 10872468 Runsl_3928 Runella slithyformis DSM 19594 endoribonuclease L-PSP YP_004657415.1 4532906 D 761193 CDS YP_004657416.1 338213361 10872469 complement(4533486..4535162) 1 NC_015703.1 PFAM: Peptidase dimerisation domain; TIGRFAM: amidohydrolase; COGs: COG2610 H+/gluconate symporter and related permease; InterPro IPR003474; KEGG: dfe:Dfer_1028 gluconate transporter; PFAM: Gluconate transporter; SPTR: Gluconate transporter; TIGRFAM: Gluconate transporter; peptidase dimerization domain-containing protein 4535162 10872469 Runsl_3929 Runella slithyformis DSM 19594 peptidase dimerization domain-containing protein YP_004657416.1 4533486 R 761193 CDS YP_004657417.1 338213362 10872470 complement(4535212..4536528) 1 NC_015703.1 PFAM: GntP family permease; TIGRFAM: gluconate transporter; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: sli:Slin_1134 periplasmic binding protein; PFAM: Periplasmic binding protein; SPTR: Periplasmic binding protein; gluconate transporter 4536528 10872470 Runsl_3930 Runella slithyformis DSM 19594 gluconate transporter YP_004657417.1 4535212 R 761193 CDS YP_004657418.1 338213363 10872471 complement(4536641..4537429) 1 NC_015703.1 PFAM: Periplasmic binding protein; KEGG: sli:Slin_4922 hypothetical protein; SPTR: uncharacterized protein; ABC transporter substrate-binding protein 4537429 10872471 Runsl_3931 Runella slithyformis DSM 19594 ABC transporter substrate-binding protein YP_004657418.1 4536641 R 761193 CDS YP_004657419.1 338213364 10872472 complement(4537441..4538919) 1 NC_015703.1 KEGG: rba:RB9620 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4538919 10872472 Runsl_3932 Runella slithyformis DSM 19594 hypothetical protein YP_004657419.1 4537441 R 761193 CDS YP_004657420.1 338213365 10872473 4539077..4540228 1 NC_015703.1 manually curated; hypothetical protein 4540228 10872473 Runsl_3933 Runella slithyformis DSM 19594 hypothetical protein YP_004657420.1 4539077 D 761193 CDS YP_004657421.1 338213366 10872475 4541461..4542480 1 NC_015703.1 PFAM: Bacterial sugar transferase; KEGG: ppn:Palpr_1085 hypothetical protein; SPTR: uncharacterized protein; sugar transferase 4542480 10872475 Runsl_3935 Runella slithyformis DSM 19594 sugar transferase YP_004657421.1 4541461 D 761193 CDS YP_004657422.1 338213367 10872476 complement(4542547..4543632) 1 NC_015703.1 KEGG: dfe:Dfer_4003 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4543632 10872476 Runsl_3936 Runella slithyformis DSM 19594 hypothetical protein YP_004657422.1 4542547 R 761193 CDS YP_004657423.1 338213368 10872477 complement(4543747..4545147) 1 NC_015703.1 KEGG: sli:Slin_4924 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4545147 10872477 Runsl_3937 Runella slithyformis DSM 19594 hypothetical protein YP_004657423.1 4543747 R 761193 CDS YP_004657424.1 338213369 10872478 4545322..4546767 1 NC_015703.1 SPTR: uncharacterized protein; hypothetical protein 4546767 10872478 Runsl_3938 Runella slithyformis DSM 19594 hypothetical protein YP_004657424.1 4545322 D 761193 CDS YP_004657425.1 338213370 10872479 4547110..4547517 1 NC_015703.1 KEGG: bvu:BVU_2900 transposase; SPTR: uncharacterized protein; hypothetical protein 4547517 10872479 Runsl_3939 Runella slithyformis DSM 19594 hypothetical protein YP_004657425.1 4547110 D 761193 CDS YP_004657426.1 338213371 10872480 4547569..4548975 1 NC_015703.1 PFAM: Transposase domain (DUF772); InterPro IPR003346; KEGG: sli:Slin_6004 transposase IS116/IS110/IS902 family protein; PFAM: Transposase, IS116/IS110/IS902; SPTR: Transposase IS116/IS110/IS902 family protein; transposase 4548975 10872480 Runsl_3940 Runella slithyformis DSM 19594 transposase YP_004657426.1 4547569 D 761193 CDS YP_004657427.1 338213372 10872481 4549670..4550680 1 NC_015703.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase; manually curated; transposase IS116/IS110/IS902 family protein 4550680 10872481 Runsl_3941 Runella slithyformis DSM 19594 transposase IS116/IS110/IS902 family protein YP_004657427.1 4549670 D 761193 CDS YP_004657428.1 338213373 10872483 complement(4551215..4551991) 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sfu:Sfum_0790 group 1 glycosyl transferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1; family 2 glycosyl transferase 4551991 10872483 Runsl_3943 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004657428.1 4551215 R 761193 CDS YP_004657429.1 338213374 10872484 complement(4551939..4553102) 1 NC_015703.1 PFAM: Glycosyl transferases group 1; InterPro IPR006342; KEGG: ava:Ava_1042 methyltransferase FkbM; SPTR: Methyltransferase FkbM; TIGRFAM: Methyltransferase FkbM; group 1 glycosyl transferase 4553102 10872484 Runsl_3944 Runella slithyformis DSM 19594 group 1 glycosyl transferase YP_004657429.1 4551939 R 761193 CDS YP_004657430.1 338213375 10872485 complement(4553102..4553803) 1 NC_015703.1 TIGRFAM: methyltransferase, FkbM family; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: cpi:Cpin_4756 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; FkbM family methyltransferase 4553803 10872485 Runsl_3945 Runella slithyformis DSM 19594 FkbM family methyltransferase YP_004657430.1 4553102 R 761193 CDS YP_004657431.1 338213376 10872486 complement(4553805..4554959) 1 NC_015703.1 PFAM: Glycosyl transferases group 1; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: rle:RL0822 DegT family aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: Pleiotropic regulatory protein; group 1 glycosyl transferase 4554959 10872486 Runsl_3946 Runella slithyformis DSM 19594 group 1 glycosyl transferase YP_004657431.1 4553805 R 761193 CDS YP_004657432.1 338213377 10872487 complement(4554966..4556081) 1 NC_015703.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; glutamine--scyllo-inositol transaminase 4556081 10872487 Runsl_3947 Runella slithyformis DSM 19594 glutamine--scyllo-inositol transaminase YP_004657432.1 4554966 R 761193 CDS YP_004657433.1 338213378 10872488 4556203..4556301 1 NC_015703.1 InterPro IPR020022:IPR011063; KEGG: mmp:MMP1081 LPS biosynthesis protein WbpG; PFAM: PP-loop; SPTR: LPS biosynthesis protein WbpG; TIGRFAM: N-acetyl sugar amidotransferase; hypothetical protein 4556301 10872488 Runsl_3948 Runella slithyformis DSM 19594 hypothetical protein YP_004657433.1 4556203 D 761193 CDS YP_004657434.1 338213379 10872489 complement(4556271..4557398) 1 NC_015703.1 PFAM: ExsB; TIGRFAM: N-acetyl sugar amidotransferase; COGs: COG0107 Imidazoleglycerol-phosphate synthase; InterPro IPR006062; KEGG: abu:Abu_0690 imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: Histidine biosynthesis; SPTR: Imidazoleglycerol phosphate synthase, cyclase subunit; N-acetyl sugar amidotransferase 4557398 10872489 Runsl_3949 Runella slithyformis DSM 19594 N-acetyl sugar amidotransferase YP_004657434.1 4556271 R 761193 CDS YP_004657435.1 338213380 10872490 complement(4557410..4558168) 1 NC_015703.1 PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; COGs: COG0118 Glutamine amidotransferase; HAMAP: Imidazole glycerol phosphate synthase, subunit H; InterPro IPR010139:IPR000991; KEGG: geb:GM18_1442 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: Glutamine amidotransferase class-I, C-terminal; SPTR: Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; histidine biosynthesis protein 4558168 10872490 Runsl_3950 Runella slithyformis DSM 19594 histidine biosynthesis protein YP_004657435.1 4557410 R 761193 CDS YP_004657436.1 338213381 10872491 complement(4558222..4558845) 1 NC_015703.1 PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; KEGG: ppy:PPE_01146 hypothetical protein; SPTR: uncharacterized protein; imidazole glycerol phosphate synthase subunit HisH 4558845 10872491 Runsl_3951 Runella slithyformis DSM 19594 imidazole glycerol phosphate synthase subunit HisH YP_004657436.1 4558222 R 761193 CDS YP_004657437.1 338213382 10872492 complement(4558859..4560073) 1 NC_015703.1 InterPro IPR006342; KEGG: pmc:P9515_13901 hypothetical protein; SPTR: Methyltransferase FkbM family; TIGRFAM: Methyltransferase FkbM; hypothetical protein 4560073 10872492 Runsl_3952 Runella slithyformis DSM 19594 hypothetical protein YP_004657437.1 4558859 R 761193 CDS YP_004657438.1 338213383 10872493 complement(4560107..4560985) 1 NC_015703.1 InterPro IPR002797; KEGG: bpi:BPLAN_034 polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; SPTR: Probable lipopolysaccharide biosynthesis protein; FkbM family methyltransferase 4560985 10872493 Runsl_3953 Runella slithyformis DSM 19594 FkbM family methyltransferase YP_004657438.1 4560107 R 761193 CDS YP_004657439.1 338213384 10872494 complement(4560978..4562138) 1 NC_015703.1 PFAM: Polysaccharide biosynthesis protein; COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: mgm:Mmc1_2423 acetyltransferase; PFAM: Bacterial transferase hexapeptide repeat; SPTR: Acetyltransferase; polysaccharide biosynthesis protein 4562138 10872494 Runsl_3954 Runella slithyformis DSM 19594 polysaccharide biosynthesis protein YP_004657439.1 4560978 R 761193 CDS YP_004657440.1 338213385 10872495 complement(4562273..4562737) 1 NC_015703.1 PFAM: Bacterial transferase hexapeptide (three repeats); COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: mgm:Mmc1_2424 oxidoreductase domain-containing protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein; transferase hexapeptide repeat containing protein 4562737 10872495 Runsl_3955 Runella slithyformis DSM 19594 transferase hexapeptide repeat containing protein YP_004657440.1 4562273 R 761193 CDS YP_004657441.1 338213386 10872496 complement(4562746..4563762) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; KEGG: ajs:Ajs_3024 hypothetical protein; SPTR: uncharacterized protein; oxidoreductase domain-containing protein 4563762 10872496 Runsl_3956 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004657441.1 4562746 R 761193 CDS YP_004657442.1 338213387 10872497 complement(4563776..4565059) 1 NC_015703.1 PFAM: O-Antigen ligase; InterPro IPR003856; KEGG: sli:Slin_4936 lipopolysaccharide biosynthesis protein; PFAM: Lipopolysaccharide biosynthesis; SPTR: Lipopolysaccharide biosynthesis protein; hypothetical protein 4565059 10872497 Runsl_3957 Runella slithyformis DSM 19594 hypothetical protein YP_004657442.1 4563776 R 761193 CDS YP_004657443.1 338213388 10872498 complement(4565386..4566453) 1 NC_015703.1 PFAM: Chain length determinant protein; COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715:IPR019554; KEGG: sli:Slin_4937 polysaccharide export protein; PFAM: Soluble ligand binding domain; Polysaccharide export protein; SPTR: Polysaccharide export protein; lipopolysaccharide biosynthesis protein 4566453 10872498 Runsl_3958 Runella slithyformis DSM 19594 lipopolysaccharide biosynthesis protein YP_004657443.1 4565386 R 761193 CDS YP_004657444.1 338213389 10872499 complement(4566512..4568845) 1 NC_015703.1 PFAM: SLBB-domain like (DUF1017); Polysaccharide biosynthesis/export protein; SLBB domain; COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: sli:Slin_6226 amino acid permease-associated region; PFAM: Amino acid permease-associated region; SPTR: Amino acid permease-associated region; soluble ligand binding domain-containing protein 4568845 10872499 Runsl_3959 Runella slithyformis DSM 19594 soluble ligand binding domain-containing protein YP_004657444.1 4566512 R 761193 CDS YP_004657445.1 338213390 10872500 4569046..4570512 1 NC_015703.1 PFAM: Amino acid permease; COGs: COG2270 Permease of the major facilitator superfamily; KEGG: dfe:Dfer_0030 permease; SPTR: Permease; amino acid permease 4570512 10872500 Runsl_3960 Runella slithyformis DSM 19594 amino acid permease YP_004657445.1 4569046 D 761193 CDS YP_004657446.1 338213391 10872501 4570524..4571831 1 NC_015703.1 PFAM: Vacuole effluxer Atg22 like; permease 4571831 10872501 Runsl_3961 Runella slithyformis DSM 19594 permease YP_004657446.1 4570524 D 761193 CDS YP_004657447.1 338213392 10872503 complement(4572226..4573632) 1 NC_015703.1 PFAM: Transposase domain (DUF772); KEGG: sli:Slin_2548 hypothetical protein; SPTR: uncharacterized protein; transposase 4573632 10872503 Runsl_3962 Runella slithyformis DSM 19594 transposase YP_004657447.1 4572226 R 761193 CDS YP_004657448.1 338213393 10872504 complement(4573746..4574744) 1 NC_015703.1 KEGG: dfe:Dfer_5099 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4574744 10872504 Runsl_3963 Runella slithyformis DSM 19594 hypothetical protein YP_004657448.1 4573746 R 761193 CDS YP_004657449.1 338213394 10872505 complement(4574794..4577520) 1 NC_015703.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_5100 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; hypothetical protein 4577520 10872505 Runsl_3964 Runella slithyformis DSM 19594 hypothetical protein YP_004657449.1 4574794 R 761193 CDS YP_004657450.1 338213395 10872506 complement(4577591..4578337) 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: dfe:Dfer_5101 cyclic nucleotide-binding protein; PFAM: Acyltransferase 3; SPTR: Cyclic nucleotide-binding protein; family 2 glycosyl transferase 4578337 10872506 Runsl_3965 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004657450.1 4577591 R 761193 CDS YP_004657451.1 338213396 10872507 complement(4578480..4579625) 1 NC_015703.1 PFAM: Acyltransferase; KEGG: dfe:Dfer_5102 hypothetical protein; SPTR: uncharacterized protein; acyltransferase 4579625 10872507 Runsl_3966 Runella slithyformis DSM 19594 acyltransferase YP_004657451.1 4578480 R 761193 CDS YP_004657452.1 338213397 10872508 complement(4579664..4581286) 1 NC_015703.1 COGs: COG3958 Transketolase C-terminal subunit; InterPro IPR005475; KEGG: dfe:Dfer_5103 transketolase central region; PFAM: Transketolase-like, pyrimidine-binding domain; SPTR: Transketolase central region; hypothetical protein 4581286 10872508 Runsl_3967 Runella slithyformis DSM 19594 hypothetical protein YP_004657452.1 4579664 R 761193 CDS YP_004657453.1 338213398 10872509 complement(4581286..4582230) 1 NC_015703.1 PFAM: Transketolase, pyrimidine binding domain; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR001173; KEGG: dfe:Dfer_5104 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Glycosyl transferase, family 2; SPTR: NAD-dependent epimerase/dehydratase; transketolase central region 4582230 10872509 Runsl_3968 Runella slithyformis DSM 19594 transketolase central region YP_004657453.1 4581286 R 761193 CDS YP_004657454.1 338213399 10872510 complement(4582236..4584251) 1 NC_015703.1 PFAM: NAD dependent epimerase/dehydratase; Glycosyl transferase 2; KEGG: cow:Calow_0919 hypothetical protein; SPTR: uncharacterized protein; NAD-dependent epimerase/dehydratase 4584251 10872510 Runsl_3969 Runella slithyformis DSM 19594 NAD-dependent epimerase/dehydratase YP_004657454.1 4582236 R 761193 CDS YP_004657455.1 338213400 10872511 complement(4584261..4584653) 1 NC_015703.1 COGs: COG3959 Transketolase N-terminal subunit; InterPro IPR005474; KEGG: dfe:Dfer_5105 transketolase domain protein; PFAM: Transketolase, N-terminal; PRIAM: Transketolase; SPTR: Transketolase domain protein; hypothetical protein 4584653 10872511 Runsl_3970 Runella slithyformis DSM 19594 hypothetical protein YP_004657455.1 4584261 R 761193 CDS YP_004657456.1 338213401 10872512 complement(4584698..4585513) 1 NC_015703.1 PFAM: Transketolase, thiamine diphosphate binding domain; COGs: COG5305 membrane protein; InterPro IPR003342; KEGG: dfe:Dfer_5106 membrane protein-like protein; PFAM: Glycosyl transferase, family 39; SPTR: Membrane protein-like protein; transketolase 4585513 10872512 Runsl_3971 Runella slithyformis DSM 19594 transketolase YP_004657456.1 4584698 R 761193 CDS YP_004657457.1 338213402 10872513 complement(4585513..4587279) 1 NC_015703.1 PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase; glycosyl transferase family protein 4587279 10872513 Runsl_3972 Runella slithyformis DSM 19594 glycosyl transferase family protein YP_004657457.1 4585513 R 761193 CDS YP_004657458.1 338213403 10872514 4587414..4587626 1 NC_015703.1 COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR002938:IPR000172; KEGG: dfe:Dfer_0230 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Monooxygenase, FAD-binding; SPTR: Glucose-methanol-choline oxidoreductase; hypothetical protein 4587626 10872514 Runsl_3973 Runella slithyformis DSM 19594 hypothetical protein YP_004657458.1 4587414 D 761193 CDS YP_004657459.1 338213404 10872515 4587842..4589581 1 NC_015703.1 PFAM: FAD binding domain; GMC oxidoreductase; InterPro IPR006311; KEGG: sli:Slin_2016 hypothetical protein; SPTR: uncharacterized protein; glucose-methanol-choline oxidoreductase 4589581 10872515 Runsl_3974 Runella slithyformis DSM 19594 glucose-methanol-choline oxidoreductase YP_004657459.1 4587842 D 761193 CDS YP_004657460.1 338213405 10872516 4589618..4590244 1 NC_015703.1 KEGG: cpi:Cpin_1738 PKD domain containing protein; SPTR: Fibronectin type III domain protein; hypothetical protein 4590244 10872516 Runsl_3975 Runella slithyformis DSM 19594 hypothetical protein YP_004657460.1 4589618 D 761193 CDS YP_004657461.1 338213406 10872517 4590308..4591804 1 NC_015703.1 COGs: COG1663 Tetraacyldisaccharide-1-P 4'-kinase; HAMAP: Tetraacyldisaccharide 4'-kinase; InterPro IPR003758; KEGG: sli:Slin_2019 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide 4'-kinase; PRIAM: Tetraacyldisaccharide 4'-kinase; SPTR: Tetraacyldisaccharide 4'-kinase; TIGRFAM: Tetraacyldisaccharide 4'-kinase; hypothetical protein 4591804 10872517 Runsl_3976 Runella slithyformis DSM 19594 hypothetical protein YP_004657461.1 4590308 D 761193 CDS YP_004657462.1 338213407 10872518 complement(4591773..4592828) 1 NC_015703.1 PFAM: Tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013342; KEGG: sli:Slin_2020 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; SPTR: Mandelate racemase/muconate lactonizing protein; tetraacyldisaccharide 4'-kinase 4592828 10872518 Runsl_3977 Runella slithyformis DSM 19594 tetraacyldisaccharide 4'-kinase YP_004657462.1 4591773 R 761193 CDS YP_004657463.1 338213408 10872519 4592907..4594016 1 NC_015703.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; TIGRFAM: o-succinylbenzoate synthase; COGs: COG2041 Sulfite oxidase; InterPro IPR000572; KEGG: cpi:Cpin_2409 oxidoreductase molybdopterin binding; PFAM: Oxidoreductase, molybdopterin binding; SPTR: Oxidoreductase molybdopterin binding; mandelate racemase 4594016 10872519 Runsl_3978 Runella slithyformis DSM 19594 mandelate racemase YP_004657463.1 4592907 D 761193 CDS YP_004657464.1 338213409 10872520 4594122..4594814 1 NC_015703.1 PFAM: Oxidoreductase molybdopterin binding domain; COGs: COG0260 Leucyl aminopeptidase; HAMAP: cytosol aminopeptidase; InterPro IPR000819; KEGG: sli:Slin_4525 leucyl aminopeptidase; PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; SPTR: Probable cytosol aminopeptidase; oxidoreductase molybdopterin binding protein 4594814 10872520 Runsl_3979 Runella slithyformis DSM 19594 oxidoreductase molybdopterin binding protein YP_004657464.1 4594122 D 761193 CDS YP_004657465.1 338213410 10872521 4594900..4596348 1 NC_015703.1 PFAM: Cytosol aminopeptidase, catalytic domain; Cytosol aminopeptidase, N-terminal domain; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR003367:IPR006665; KEGG: lby:Lbys_2206 thrombospondin type 3 repeat-containing protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Thrombospondin, type 3-like repeat; SPTR: Thrombospondin type 3 repeat-containing protein; cytosol aminopeptidase 4596348 10872521 Runsl_3980 Runella slithyformis DSM 19594 cytosol aminopeptidase YP_004657465.1 4594900 D 761193 CDS YP_004657466.1 338213411 10872522 4596472..4598289 1 NC_015703.1 PFAM: OmpA family; Thrombospondin type 3 repeat; KEGG: lby:Lbys_2206 thrombospondin type 3 repeat-containing protein; SPTR: Thrombospondin type 3 repeat-containing protein; OmpA/MotB domain-containing protein 4598289 10872522 Runsl_3981 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004657466.1 4596472 D 761193 CDS YP_004657467.1 338213412 10872523 4598383..4599132 1 NC_015703.1 InterPro IPR000537; KEGG: sli:Slin_2533 UbiA prenyltransferase; PFAM: UbiA prenyltransferase; SPTR: UbiA prenyltransferase; thrombospondin type 3 repeat-containing protein 4599132 10872523 Runsl_3982 Runella slithyformis DSM 19594 thrombospondin type 3 repeat-containing protein YP_004657467.1 4598383 D 761193 CDS YP_004657468.1 338213413 10872524 4599163..4600011 1 NC_015703.1 PFAM: UbiA prenyltransferase; UbiA prenyltransferase 4600011 10872524 Runsl_3983 Runella slithyformis DSM 19594 UbiA prenyltransferase YP_004657468.1 4599163 D 761193 CDS YP_004657469.1 338213414 10872526 4600431..4600934 1 NC_015703.1 PFAM: HNH endonuclease; COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: cao:Celal_2798 transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase; HNH endonuclease 4600934 10872526 Runsl_3984 Runella slithyformis DSM 19594 HNH endonuclease YP_004657469.1 4600431 D 761193 CDS YP_004657470.1 338213415 10872527 complement(4601233..4602216) 1 NC_015703.1 PFAM: Transposase; KEGG: dfe:Dfer_4027 hypothetical protein; SPTR: uncharacterized protein; transposase IS204/IS1001/IS1096/IS1165 family protein 4602216 10872527 Runsl_3985 Runella slithyformis DSM 19594 transposase IS204/IS1001/IS1096/IS1165 family protein YP_004657470.1 4601233 R 761193 CDS YP_004657471.1 338213416 10872528 complement(4602197..4602559) 1 NC_015703.1 hypothetical protein 4602559 10872528 Runsl_3986 Runella slithyformis DSM 19594 hypothetical protein YP_004657471.1 4602197 R 761193 CDS YP_004657472.1 338213417 10872531 complement(4603142..4603894) 1 NC_015703.1 PFAM: short chain dehydrogenase; serine 3-dehydrogenase 4603894 10872531 Runsl_3987 Runella slithyformis DSM 19594 serine 3-dehydrogenase YP_004657472.1 4603142 R 761193 CDS YP_004657473.1 338213418 10872532 complement(4603964..4604326) 1 NC_015703.1 COGs: COG0450 Peroxiredoxin; InterPro IPR000866:IPR019479; KEGG: dfe:Dfer_5194 peroxidase; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin, C-terminal; PRIAM: Peroxidase; SPTR: Peroxidase; hypothetical protein 4604326 10872532 Runsl_3988 Runella slithyformis DSM 19594 hypothetical protein YP_004657473.1 4603964 R 761193 CDS YP_004657474.1 338213419 10872533 complement(4604548..4605183) 1 NC_015703.1 PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family; KEGG: sli:Slin_1291 hypothetical protein; SPTR: uncharacterized protein; peroxidase 4605183 10872533 Runsl_3989 Runella slithyformis DSM 19594 peroxidase YP_004657474.1 4604548 R 761193 CDS YP_004657475.1 338213420 10872534 4605405..4606196 1 NC_015703.1 COGs: COG0524 Sugar kinase ribokinase; InterPro IPR011611; KEGG: sli:Slin_1057 PfkB domain protein; PFAM: Carbohydrate/purine kinase; SPTR: PfkB domain protein; hypothetical protein 4606196 10872534 Runsl_3990 Runella slithyformis DSM 19594 hypothetical protein YP_004657475.1 4605405 D 761193 CDS YP_004657476.1 338213421 10872535 4606203..4607216 1 NC_015703.1 PFAM: pfkB family carbohydrate kinase; COGs: COG4886 Leucine-rich repeat (LRR) protein; InterPro IPR001611:IPR003591; KEGG: sli:Slin_1833 leucine-rich repeat-containing protein typical subtype; SPTR: Leucine-rich repeat-containing protein typical subtype; PfkB domain-containing protein 4607216 10872535 Runsl_3991 Runella slithyformis DSM 19594 PfkB domain-containing protein YP_004657476.1 4606203 D 761193 CDS YP_004657477.1 338213422 10872536 4607322..4608710 1 NC_015703.1 PFAM: Leucine Rich Repeat; hypothetical protein 4608710 10872536 Runsl_3992 Runella slithyformis DSM 19594 hypothetical protein YP_004657477.1 4607322 D 761193 CDS YP_004657478.1 338213423 10872538 4609100..4609462 1 NC_015703.1 COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: cao:Celal_2798 transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase; hypothetical protein 4609462 10872538 Runsl_3993 Runella slithyformis DSM 19594 hypothetical protein YP_004657478.1 4609100 D 761193 CDS YP_004657479.1 338213424 10872539 4609443..4610426 1 NC_015703.1 PFAM: Transposase; InterPro IPR001107; KEGG: cpi:Cpin_5610 hypothetical protein; PFAM: Band 7 protein; SPTR: Band 7 protein; transposase IS204/IS1001/IS1096/IS1165 family protein 4610426 10872539 Runsl_3994 Runella slithyformis DSM 19594 transposase IS204/IS1001/IS1096/IS1165 family protein YP_004657479.1 4609443 D 761193 CDS YP_004657480.1 338213425 10872540 complement(4611244..4612032) 1 NC_015703.1 PFAM: SPFH domain / Band 7 family; COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR003392; KEGG: dfe:Dfer_0413 conserved hypothetical protein, membrane; PFAM: Patched; SPTR: uncharacterized protein; hypothetical protein 4612032 10872540 Runsl_3995 Runella slithyformis DSM 19594 hypothetical protein YP_004657480.1 4611244 R 761193 CDS YP_004657481.1 338213426 10872541 4612532..4614847 1 NC_015703.1 PFAM: MMPL family; KEGG: sli:Slin_0262 Xaa-Pro aminopeptidase; SPTR: Xaa-Pro aminopeptidase enzyme; hypothetical protein 4614847 10872541 Runsl_3996 Runella slithyformis DSM 19594 hypothetical protein YP_004657481.1 4612532 D 761193 CDS YP_004657482.1 338213427 10872542 complement(4615042..4616433) 1 NC_015703.1 PFAM: Metallopeptidase M24; InterPro IPR000182; KEGG: mxa:MXAN_2839 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase, GNAT family; Xaa-Pro aminopeptidase 4616433 10872542 Runsl_3997 Runella slithyformis DSM 19594 Xaa-Pro aminopeptidase YP_004657482.1 4615042 R 761193 CDS YP_004657483.1 338213428 10872543 4616555..4617109 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: shg:Sph21_2951 xylose isomerase domain-containing protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; N-acetyltransferase GCN5 4617109 10872543 Runsl_3998 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004657483.1 4616555 D 761193 CDS YP_004657484.1 338213429 10872544 complement(4617106..4618029) 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: dfe:Dfer_5762 hypothetical protein; SPTR: uncharacterized protein; xylose isomerase domain-containing protein 4618029 10872544 Runsl_3999 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004657484.1 4617106 R 761193 CDS YP_004657485.1 338213430 10872545 4618233..4621064 1 NC_015703.1 COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR005913; KEGG: sli:Slin_4815 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; SPTR: dTDP-4-dehydrorhamnose reductase; hypothetical protein 4621064 10872545 Runsl_4000 Runella slithyformis DSM 19594 hypothetical protein YP_004657485.1 4618233 D 761193 CDS YP_004657486.1 338213431 10872546 4621158..4622054 1 NC_015703.1 PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase; COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: dfe:Dfer_4684 membrane bound O-acyl transferase MBOAT family protein; PFAM: Membrane bound O-acyl transferase, MBOAT; SPTR: Membrane bound O-acyl transferase MBOAT family protein; dTDP-4-dehydrorhamnose reductase 4622054 10872546 Runsl_4001 Runella slithyformis DSM 19594 dTDP-4-dehydrorhamnose reductase YP_004657486.1 4621158 D 761193 CDS YP_004657487.1 338213432 10872547 complement(4622147..4623598) 1 NC_015703.1 PFAM: MBOAT family; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_4683 ribonuclease III; PFAM: Glycosyl transferase, family 2; SPTR: Ribonuclease III; membrane bound O-acyl transferase MBOAT family protein 4623598 10872547 Runsl_4002 Runella slithyformis DSM 19594 membrane bound O-acyl transferase MBOAT family protein YP_004657487.1 4622147 R 761193 CDS YP_004657488.1 338213433 10872548 complement(4623700..4624680) 1 NC_015703.1 PFAM: Glycosyl transferase 2; KEGG: dfe:Dfer_4682 hypothetical protein; SPTR: uncharacterized protein; family 2 glycosyl transferase 4624680 10872548 Runsl_4003 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004657488.1 4623700 R 761193 CDS YP_004657489.1 338213434 10872549 complement(4624730..4626358) 1 NC_015703.1 KEGG: dfe:Dfer_4681 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4626358 10872549 Runsl_4004 Runella slithyformis DSM 19594 hypothetical protein YP_004657489.1 4624730 R 761193 CDS YP_004657490.1 338213435 10872550 complement(4626358..4627776) 1 NC_015703.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_4680 ribonuclease III; PFAM: Glycosyl transferase, family 2; SPTR: Ribonuclease III; hypothetical protein 4627776 10872550 Runsl_4005 Runella slithyformis DSM 19594 hypothetical protein YP_004657490.1 4626358 R 761193 CDS YP_004657491.1 338213436 10872551 complement(4627904..4628860) 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR013747; KEGG: dfe:Dfer_3948 beta-ketoacyl-acyl-carrier-protein synthase I; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase III; SPTR: Beta-ketoacyl-acyl-carrier-protein synthase I; family 2 glycosyl transferase 4628860 10872551 Runsl_4006 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004657491.1 4627904 R 761193 CDS YP_004657492.1 338213437 10872552 4629093..4630037 1 NC_015703.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; KEGG: sli:Slin_0045 hypothetical protein; SPTR: uncharacterized protein; manually curated; 3-ketoacyl-ACP synthase III 4630037 10872552 Runsl_4007 Runella slithyformis DSM 19594 3-ketoacyl-ACP synthase III YP_004657492.1 4629093 D 761193 CDS YP_004657493.1 338213438 10872553 complement(join(4630128..4630703,4630706..4631029)) 1 NC_015703.1 PFAM: transposase, YhgA-like; TIGRFAM: conserved hypothetical protein ( transposase or invertase); COGs: COG4341 HD phosphohydrolase; InterPro IPR006675; KEGG: sli:Slin_3397 metal dependent phosphohydrolase; SPTR: Metal dependent phosphohydrolase; TIGRFAM: HDIG; transposase 4631029 10872553 Runsl_4008 Runella slithyformis DSM 19594 transposase YP_004657493.1 4630128 R 761193 CDS YP_004657494.1 338213439 10872554 complement(4631081..4631632) 1 NC_015703.1 PFAM: HD domain; TIGRFAM: phosphonate degradation operons associated HDIG domain protein; uncharacterized domain HDIG; COGs: COG3391 conserved hypothetical protein; KEGG: sli:Slin_3396 phosphoesterase; SPTR: Phosphoesterase; metal dependent phosphohydrolase 4631632 10872554 Runsl_4009 Runella slithyformis DSM 19594 metal dependent phosphohydrolase YP_004657494.1 4631081 R 761193 CDS YP_004657495.1 338213440 10872555 complement(4631744..4634464) 1 NC_015703.1 KEGG: sli:Slin_3399 hypothetical protein; SPTR: uncharacterized protein; phosphoesterase 4634464 10872555 Runsl_4010 Runella slithyformis DSM 19594 phosphoesterase YP_004657495.1 4631744 R 761193 CDS YP_004657496.1 338213441 10872556 complement(4634555..4636054) 1 NC_015703.1 hypothetical protein 4636054 10872556 Runsl_4011 Runella slithyformis DSM 19594 hypothetical protein YP_004657496.1 4634555 R 761193 CDS YP_004657497.1 338213442 10872557 complement(4636068..4636544) 1 NC_015703.1 InterPro IPR000200; KEGG: sli:Slin_2129 peptidase C10 streptopain; PFAM: Peptidase C10, streptopain; SPTR: Peptidase C10 streptopain; hypothetical protein 4636544 10872557 Runsl_4012 Runella slithyformis DSM 19594 hypothetical protein YP_004657497.1 4636068 R 761193 CDS YP_004657498.1 338213443 10872558 complement(4636556..4637878) 1 NC_015703.1 PFAM: Peptidase C10 family; InterPro IPR012910; KEGG: sli:Slin_3400 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; peptidase C10 streptopain 4637878 10872558 Runsl_4013 Runella slithyformis DSM 19594 peptidase C10 streptopain YP_004657498.1 4636556 R 761193 CDS YP_004657499.1 338213444 10872559 complement(4637959..4641177) 1 NC_015703.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR005834; KEGG: sli:Slin_3402 haloacid dehalogenase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Haloacid dehalogenase domain protein hydrolase; TonB-dependent receptor plug 4641177 10872559 Runsl_4014 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004657499.1 4637959 R 761193 CDS YP_004657500.1 338213445 10872560 4641446..4642195 1 NC_015703.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: phosphonatase-like hydrolase; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR017741:IPR006076; KEGG: sli:Slin_3401 FAD dependent oxidoreductase TIGR03364; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase TIGR03364; TIGRFAM: FAD-dependent oxidoreductase, HpnW; haloacid dehalogenase 4642195 10872560 Runsl_4015 Runella slithyformis DSM 19594 haloacid dehalogenase YP_004657500.1 4641446 D 761193 CDS YP_004657501.1 338213446 10872561 4642195..4643343 1 NC_015703.1 PFAM: FAD dependent oxidoreductase; TIGRFAM: FAD dependent oxidoreductase TIGR03364; InterPro IPR003140; KEGG: sli:Slin_0089 hypothetical protein; PFAM: Phospholipase/carboxylesterase; SPTR: uncharacterized protein; FAD dependent oxidoreductase 4643343 10872561 Runsl_4016 Runella slithyformis DSM 19594 FAD dependent oxidoreductase YP_004657501.1 4642195 D 761193 CDS YP_004657502.1 338213447 10872562 complement(4643405..4644049) 1 NC_015703.1 PFAM: Phospholipase/Carboxylesterase; KEGG: sli:Slin_5039 hypothetical protein; SPTR: uncharacterized protein; phospholipase/carboxylesterase 4644049 10872562 Runsl_4017 Runella slithyformis DSM 19594 phospholipase/carboxylesterase YP_004657502.1 4643405 R 761193 CDS YP_004657503.1 338213448 10872563 4644124..4644531 1 NC_015703.1 hypothetical protein 4644531 10872563 Runsl_4018 Runella slithyformis DSM 19594 hypothetical protein YP_004657503.1 4644124 D 761193 CDS YP_004657504.1 338213449 10872564 4644745..4644879 1 NC_015703.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: caa:Caka_1487 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: Probable TonB-dependent receptor yncD; hypothetical protein 4644879 10872564 Runsl_4019 Runella slithyformis DSM 19594 hypothetical protein YP_004657504.1 4644745 D 761193 CDS YP_004657505.1 338213450 10872565 complement(4645442..4647598) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase; InterPro IPR003265; KEGG: sli:Slin_2269 HhH-GPD family protein; PFAM: HhH-GPD domain; SMART: HhH-GPD domain; SPTR: HhH-GPD family protein; TonB-dependent receptor 4647598 10872565 Runsl_4020 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004657505.1 4645442 R 761193 CDS YP_004657506.1 338213451 10872566 4648032..4648634 1 NC_015703.1 PFAM: HhH-GPD superfamily base excision DNA repair protein; KEGG: cly:Celly_2677 hypothetical protein; SPTR: uncharacterized protein; HhH-GPD family protein 4648634 10872566 Runsl_4021 Runella slithyformis DSM 19594 HhH-GPD family protein YP_004657506.1 4648032 D 761193 CDS YP_004657507.1 338213452 10872567 4648704..4649222 1 NC_015703.1 COGs: COG3757 Lyzozyme M1 (1 4-beta-N-acetylmuramidase); InterPro IPR018077:IPR002053; KEGG: dfe:Dfer_2632 glycoside hydrolase 25; PFAM: Glycoside hydrolase, family 25; SMART: Glycoside hydrolase, family 25 subgroup; SPTR: Glycoside hydrolase 25; hypothetical protein 4649222 10872567 Runsl_4022 Runella slithyformis DSM 19594 hypothetical protein YP_004657507.1 4648704 D 761193 CDS YP_004657508.1 338213453 10872568 4649249..4650049 1 NC_015703.1 PFAM: Glycosyl hydrolases family 25; COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: rbi:RB2501_07005 WD40-like beta propeller protein; PFAM: WD40-like Beta Propeller; SPTR: WD40-like Beta Propeller; glycoside hydrolase 4650049 10872568 Runsl_4023 Runella slithyformis DSM 19594 glycoside hydrolase YP_004657508.1 4649249 D 761193 CDS YP_004657509.1 338213454 10872569 complement(4650168..4651220) 1 NC_015703.1 PFAM: WD40-like Beta Propeller Repeat; COGs: COG3361 conserved hypothetical protein; InterPro IPR018644; KEGG: tsa:AciPR4_3498 hypothetical protein; PFAM: Protein of unknown function DUF2071; SPTR: uncharacterized protein; hypothetical protein 4651220 10872569 Runsl_4024 Runella slithyformis DSM 19594 hypothetical protein YP_004657509.1 4650168 R 761193 CDS YP_004657510.1 338213455 10872570 complement(4651630..4652343) 1 NC_015703.1 PFAM: Uncharacterized conserved protein (COG2071); COGs: COG3655 transcriptional regulator protein; InterPro IPR001387; KEGG: ckr:CKR_3004 hypothetical protein; SMART: Helix-turn-helix type 3; SPTR: uncharacterized protein; hypothetical protein 4652343 10872570 Runsl_4025 Runella slithyformis DSM 19594 hypothetical protein YP_004657510.1 4651630 R 761193 CDS YP_004657511.1 338213456 10872571 complement(4652618..4652842) 1 NC_015703.1 XRE family transcriptional regulator 4652842 10872571 Runsl_4026 Runella slithyformis DSM 19594 XRE family transcriptional regulator YP_004657511.1 4652618 R 761193 CDS YP_004657512.1 338213457 10872572 complement(4652846..4653340) 1 NC_015703.1 COGs: COG0166 Glucose-6-phosphate isomerase; HAMAP: Phosphoglucose isomerase (PGI); InterPro IPR001672; KEGG: dfe:Dfer_1231 glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase (PGI); PRIAM: Glucose-6-phosphate isomerase; SPTR: Glucose-6-phosphate isomerase; hypothetical protein 4653340 10872572 Runsl_4027 Runella slithyformis DSM 19594 hypothetical protein YP_004657512.1 4652846 R 761193 CDS YP_004657513.1 338213458 10872573 4653661..4655310 1 NC_015703.1 PFAM: Phosphoglucose isomerase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: sli:Slin_2407 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; glucose-6-phosphate isomerase 4655310 10872573 Runsl_4028 Runella slithyformis DSM 19594 glucose-6-phosphate isomerase YP_004657513.1 4653661 D 761193 CDS YP_004657514.1 338213459 10872574 4655488..4656648 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR000182; KEGG: dfe:Dfer_1254 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; AraC family transcriptional regulator 4656648 10872574 Runsl_4029 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004657514.1 4655488 D 761193 CDS YP_004657515.1 338213460 10872575 complement(4656645..4657439) 1 NC_015703.1 KEGG: sli:Slin_2406 acyltransferase 3; SPTR: Acyltransferase 3; N-acetyltransferase GCN5 4657439 10872575 Runsl_4030 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004657515.1 4656645 R 761193 CDS YP_004657516.1 338213461 10872576 4657597..4658772 1 NC_015703.1 PFAM: Acyltransferase; KEGG: mtt:Ftrac_0427 hypothetical protein; SPTR: uncharacterized protein; acyltransferase 4658772 10872576 Runsl_4031 Runella slithyformis DSM 19594 acyltransferase YP_004657516.1 4657597 D 761193 CDS YP_004657517.1 338213462 10872577 4658784..4659509 1 NC_015703.1 COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; InterPro IPR006148; KEGG: dfe:Dfer_2815 glucosamine-6-phosphate deaminase; PFAM: Glucosamine/galactosamine-6-phosphate isomerase; PRIAM: Glucosamine-6-phosphate deaminase; SPTR: Glucosamine-6-phosphate deaminase; hypothetical protein 4659509 10872577 Runsl_4032 Runella slithyformis DSM 19594 hypothetical protein YP_004657517.1 4658784 D 761193 CDS YP_004657518.1 338213463 10872578 4659589..4660302 1 NC_015703.1 PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; TIGRFAM: glucosamine-6-phosphate isomerase; InterPro IPR008671; KEGG: sli:Slin_0447 lycopene beta and epsilon cyclase; PFAM: Lycopene beta/epsilon cyclase; SPTR: Lycopene beta and epsilon cyclase; glucosamine-6-phosphate deaminase 4660302 10872578 Runsl_4033 Runella slithyformis DSM 19594 glucosamine-6-phosphate deaminase YP_004657518.1 4659589 D 761193 CDS YP_004657519.1 338213464 10872579 complement(4660299..4661456) 1 NC_015703.1 PFAM: Lycopene cyclase; Prodigal; manually curated; Lycopene beta and epsilon cyclase 4661456 10872579 Runsl_4034 Runella slithyformis DSM 19594 Lycopene beta and epsilon cyclase YP_004657519.1 4660299 R 761193 CDS YP_004657520.1 338213465 10872581 4662319..4662522 1 NC_015703.1 hypothetical protein 4662522 10872581 Runsl_4036 Runella slithyformis DSM 19594 hypothetical protein YP_004657520.1 4662319 D 761193 CDS YP_004657521.1 338213466 10872582 4662519..4662683 1 NC_015703.1 hypothetical protein 4662683 10872582 Runsl_4037 Runella slithyformis DSM 19594 hypothetical protein YP_004657521.1 4662519 D 761193 CDS YP_004657522.1 338213467 10872583 4662714..4662911 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 4662911 10872583 Runsl_4038 Runella slithyformis DSM 19594 hypothetical protein YP_004657522.1 4662714 D 761193 CDS YP_004657523.1 338213468 10872585 4664299..4665414 1 NC_015703.1 hypothetical protein 4665414 10872585 Runsl_4040 Runella slithyformis DSM 19594 hypothetical protein YP_004657523.1 4664299 D 761193 CDS YP_004657524.1 338213469 10872586 complement(4665627..4665986) 1 NC_015703.1 hypothetical protein 4665986 10872586 Runsl_4041 Runella slithyformis DSM 19594 hypothetical protein YP_004657524.1 4665627 R 761193 CDS YP_004657525.1 338213470 10872587 4666252..4666494 1 NC_015703.1 hypothetical protein 4666494 10872587 Runsl_4042 Runella slithyformis DSM 19594 hypothetical protein YP_004657525.1 4666252 D 761193 CDS YP_004657526.1 338213471 10872588 4666510..4666737 1 NC_015703.1 hypothetical protein 4666737 10872588 Runsl_4043 Runella slithyformis DSM 19594 hypothetical protein YP_004657526.1 4666510 D 761193 CDS YP_004657527.1 338213472 10872589 4666835..4667422 1 NC_015703.1 KEGG: shg:Sph21_4440 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4667422 10872589 Runsl_4044 Runella slithyformis DSM 19594 hypothetical protein YP_004657527.1 4666835 D 761193 CDS YP_004657528.1 338213473 10872590 4667491..4667973 1 NC_015703.1 PFAM: CAAX amino terminal protease; Prodigal; manually curated; hypothetical protein 4667973 10872590 Runsl_4045 Runella slithyformis DSM 19594 hypothetical protein YP_004657528.1 4667491 D 761193 CDS YP_004657529.1 338213474 10872592 complement(4669175..4669432) 1 NC_015703.1 PFAM: Plasmid encoded toxin Txe; TIGRFAM: toxin-antitoxin system, toxin component, Txe/YoeB family; KEGG: cyh:Cyan8802_3568 hypothetical protein; SPTR: uncharacterized protein; Txe/YoeB family addiction module toxin 4669432 10872592 Runsl_4047 Runella slithyformis DSM 19594 Txe/YoeB family addiction module toxin YP_004657529.1 4669175 R 761193 CDS YP_004657530.1 338213475 10872593 complement(4669425..4669679) 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 4669679 10872593 Runsl_4048 Runella slithyformis DSM 19594 hypothetical protein YP_004657530.1 4669425 R 761193 CDS YP_004657531.1 338213476 10872595 complement(4671493..4672371) 1 NC_015703.1 PFAM: Radical SAM superfamily; TIGRFAM: lipoate synthase; KEGG: dfe:Dfer_3201 hypothetical protein; SPTR: uncharacterized protein; lipoyl synthase 4672371 10872595 Runsl_4050 Runella slithyformis DSM 19594 lipoyl synthase YP_004657531.1 4671493 R 761193 CDS YP_004657532.1 338213477 10872596 complement(4672445..4673203) 1 NC_015703.1 COGs: COG1765 redox protein regulator of disulfide bond formation; InterPro IPR003718; KEGG: sli:Slin_0444 OsmC family protein; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: OsmC family protein; hypothetical protein 4673203 10872596 Runsl_4051 Runella slithyformis DSM 19594 hypothetical protein YP_004657532.1 4672445 R 761193 CDS YP_004657533.1 338213478 10872597 4673424..4673852 1 NC_015703.1 PFAM: OsmC-like protein; InterPro IPR010846; KEGG: lby:Lbys_1701 hypothetical protein; PFAM: Protein of unknown function DUF1460; SPTR: uncharacterized protein; OsmC family protein 4673852 10872597 Runsl_4052 Runella slithyformis DSM 19594 OsmC family protein YP_004657533.1 4673424 D 761193 CDS YP_004657534.1 338213479 10872598 4673913..4674728 1 NC_015703.1 PFAM: Protein of unknown function (DUF1460); COGs: COG1864 DNA/RNA endonuclease G NUC1; InterPro IPR020821:IPR001604; KEGG: sli:Slin_0792 DNA/RNA non-specific endonuclease; PFAM: DNA/RNA non-specific endonuclease; SMART: Extracellular Endonuclease, subunit A; SPTR: DNA/RNA non-specific endonuclease; hypothetical protein 4674728 10872598 Runsl_4053 Runella slithyformis DSM 19594 hypothetical protein YP_004657534.1 4673913 D 761193 CDS YP_004657535.1 338213480 10872599 complement(4674730..4675773) 1 NC_015703.1 PFAM: DNA/RNA non-specific endonuclease; COGs: COG2081 flavoprotein; InterPro IPR004792; KEGG: sli:Slin_0791 HI0933 family protein; PFAM: HI0933-like protein; SPTR: HI0933 family protein; TIGRFAM: HI0933-like protein; DNA/RNA non-specific endonuclease 4675773 10872599 Runsl_4054 Runella slithyformis DSM 19594 DNA/RNA non-specific endonuclease YP_004657535.1 4674730 R 761193 CDS YP_004657536.1 338213481 10872600 4675888..4677138 1 NC_015703.1 PFAM: HI0933-like protein; TIGRFAM: flavoprotein, HI0933 family; COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: dfe:Dfer_2940 NLP/P60 protein; PFAM: NLP/P60; SPTR: NLP/P60 protein; hypothetical protein 4677138 10872600 Runsl_4055 Runella slithyformis DSM 19594 hypothetical protein YP_004657536.1 4675888 D 761193 CDS YP_004657537.1 338213482 10872601 complement(4677231..4677746) 1 NC_015703.1 PFAM: NlpC/P60 family; InterPro IPR000182; KEGG: sli:Slin_1326 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; NLP/P60 protein 4677746 10872601 Runsl_4056 Runella slithyformis DSM 19594 NLP/P60 protein YP_004657537.1 4677231 R 761193 CDS YP_004657538.1 338213483 10872602 4677994..4678491 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; N-acetyltransferase GCN5 4678491 10872602 Runsl_4057 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004657538.1 4677994 D 761193 CDS YP_004657539.1 338213484 10872603 4678560..4678781 1 NC_015703.1 KEGG: sli:Slin_5131 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4678781 10872603 Runsl_4058 Runella slithyformis DSM 19594 hypothetical protein YP_004657539.1 4678560 D 761193 CDS YP_004657540.1 338213485 10872604 4678771..4679094 1 NC_015703.1 COGs: COG1331 Highly conserved protein containing a thioredoxin domain; InterPro IPR004879; KEGG: dfe:Dfer_0027 protein of unknown function DUF255; SPTR: uncharacterized protein; hypothetical protein 4679094 10872604 Runsl_4059 Runella slithyformis DSM 19594 hypothetical protein YP_004657540.1 4678771 D 761193 CDS YP_004657541.1 338213486 10872605 4679212..4681314 1 NC_015703.1 PFAM: Protein of unknown function, DUF255; COGs: COG1738 conserved hypothetical protein; InterPro IPR003744; KEGG: dfe:Dfer_2724 hypothetical protein; PFAM: Protein of unknown function DUF165; SPTR: uncharacterized protein; TIGRFAM: Protein of unknown function DUF165; hypothetical protein 4681314 10872605 Runsl_4060 Runella slithyformis DSM 19594 hypothetical protein YP_004657541.1 4679212 D 761193 CDS YP_004657542.1 338213487 10872606 4681339..4682136 1 NC_015703.1 PFAM: Uncharacterized ACR, YhhQ family COG1738; TIGRFAM: conserved hypothetical integral membrane protein; COGs: COG3129 SAM-dependent methyltransferase; HAMAP: Ribosomal RNA large subunit methyltransferase F; InterPro IPR010286:IPR016909; KEGG: ppr:PBPRB0892 SAM-dependent methyltransferase; PFAM: S-adenosyl-L-methionine dependent methyltransferase, predicted; PRIAM: rRNA (adenine-N(6)-)-methyltransferase; SPTR: Ribosomal RNA large subunit methyltransferase F; hypothetical protein 4682136 10872606 Runsl_4061 Runella slithyformis DSM 19594 hypothetical protein YP_004657542.1 4681339 D 761193 CDS YP_004657543.1 338213488 10872607 complement(4682169..4683137) 1 NC_015703.1 PFAM: Protein of unknown function (DUF890); ribosomal RNA large subunit methyltransferase F 4683137 10872607 Runsl_4062 Runella slithyformis DSM 19594 ribosomal RNA large subunit methyltransferase F YP_004657543.1 4682169 R 761193 CDS YP_004657544.1 338213489 10872608 complement(4683154..4683321) 1 NC_015703.1 InterPro IPR006626:IPR011459; KEGG: sli:Slin_1130 PDZ/DHR/GLGF domain protein; PFAM: Protein of unknown function DUF1565; SPTR: PDZ/DHR/GLGF domain protein; hypothetical protein 4683321 10872608 Runsl_4063 Runella slithyformis DSM 19594 hypothetical protein YP_004657544.1 4683154 R 761193 CDS YP_004657545.1 338213490 10872609 complement(4683704..4686061) 1 NC_015703.1 COGs: COG1115 Na+/alanine symporter; InterPro IPR001463; KEGG: shg:Sph21_0204 amino acid carrier protein; PFAM: Sodium:alanine symporter; SPTR: Amino acid carrier protein; TIGRFAM: Sodium:alanine symporter; hypothetical protein 4686061 10872609 Runsl_4064 Runella slithyformis DSM 19594 hypothetical protein YP_004657545.1 4683704 R 761193 CDS YP_004657546.1 338213491 10872610 4686259..4687686 1 NC_015703.1 PFAM: Sodium:alanine symporter family; TIGRFAM: amino acid carrier protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: dfe:Dfer_2873 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; amino acid carrier protein 4687686 10872610 Runsl_4065 Runella slithyformis DSM 19594 amino acid carrier protein YP_004657546.1 4686259 D 761193 CDS YP_004657547.1 338213492 10872611 4687947..4689230 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR006311:IPR012307; KEGG: dfe:Dfer_2872 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; oxidoreductase domain-containing protein 4689230 10872611 Runsl_4066 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004657547.1 4687947 D 761193 CDS YP_004657548.1 338213493 10872612 4689345..4690244 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001:IPR001650:IPR011545:IPR005580; KEGG: sli:Slin_3331 DEAD/DEAH box helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein; xylose isomerase domain-containing protein 4690244 10872612 Runsl_4067 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004657548.1 4689345 D 761193 CDS YP_004657549.1 338213494 10872613 4690399..4691721 1 NC_015703.1 PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase; COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: dfe:Dfer_3737 AAA ATPase; SMART: ATPase, AAA+ type, core; SPTR: AAA ATPase; DEAD/DEAH box helicase 4691721 10872613 Runsl_4068 Runella slithyformis DSM 19594 DEAD/DEAH box helicase YP_004657549.1 4690399 D 761193 CDS YP_004657550.1 338213495 10872614 4691899..4693083 1 NC_015703.1 PFAM: ATPase associated with various cellular activities (AAA); KEGG: sli:Slin_3516 hypothetical protein; SPTR: uncharacterized protein; ATPase AAA 4693083 10872614 Runsl_4069 Runella slithyformis DSM 19594 ATPase AAA YP_004657550.1 4691899 D 761193 CDS YP_004657551.1 338213496 10872615 4693092..4694384 1 NC_015703.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_1279 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; hypothetical protein 4694384 10872615 Runsl_4070 Runella slithyformis DSM 19594 hypothetical protein YP_004657551.1 4693092 D 761193 CDS YP_004657552.1 338213497 10872616 complement(4694391..4695131) 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: dfe:Dfer_1280 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; LytTR family two component transcriptional regulator 4695131 10872616 Runsl_4071 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004657552.1 4694391 R 761193 CDS YP_004657553.1 338213498 10872617 complement(4695141..4697213) 1 NC_015703.1 PFAM: Histidine kinase; 7TM diverse intracellular signalling; InterPro IPR006311:IPR013096; KEGG: sli:Slin_3501 cupin; PFAM: Cupin 2, conserved barrel; SPTR: Cupin 2 conserved barrel domain protein; signal transduction histidine kinase 4697213 10872617 Runsl_4072 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004657553.1 4695141 R 761193 CDS YP_004657554.1 338213499 10872618 4697487..4698098 1 NC_015703.1 PFAM: Cupin domain; Prodigal; manually curated; cupin 4698098 10872618 Runsl_4073 Runella slithyformis DSM 19594 cupin YP_004657554.1 4697487 D 761193 CDS YP_004657555.1 338213500 10872620 4699161..4699739 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 4699739 10872620 Runsl_4075 Runella slithyformis DSM 19594 hypothetical protein YP_004657555.1 4699161 D 761193 CDS YP_004657556.1 338213501 10872622 4701081..4704254 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-linked outer membrane protein, SusC/RagA family; KEGG: sli:Slin_4223 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 4704254 10872622 Runsl_4077 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004657556.1 4701081 D 761193 CDS YP_004657557.1 338213502 10872623 4704275..4705900 1 NC_015703.1 PFAM: SusD family; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: dfe:Dfer_4164 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; hypothetical protein 4705900 10872623 Runsl_4078 Runella slithyformis DSM 19594 hypothetical protein YP_004657557.1 4704275 D 761193 CDS YP_004657558.1 338213503 10872624 complement(4706079..4709198) 1 NC_015703.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_4163 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; acriflavin resistance protein 4709198 10872624 Runsl_4079 Runella slithyformis DSM 19594 acriflavin resistance protein YP_004657558.1 4706079 R 761193 CDS YP_004657559.1 338213504 10872625 complement(4709211..4710269) 1 NC_015703.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_4162 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; RND family efflux transporter MFP subunit 4710269 10872625 Runsl_4080 Runella slithyformis DSM 19594 RND family efflux transporter MFP subunit YP_004657559.1 4709211 R 761193 CDS YP_004657560.1 338213505 10872626 complement(4710285..4711616) 1 NC_015703.1 PFAM: Outer membrane efflux protein; InterPro IPR000835; KEGG: dfe:Dfer_4161 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; outer membrane efflux protein 4711616 10872626 Runsl_4081 Runella slithyformis DSM 19594 outer membrane efflux protein YP_004657560.1 4710285 R 761193 CDS YP_004657561.1 338213506 10872627 complement(4711694..4712170) 1 NC_015703.1 PFAM: MarR family; InterPro IPR008538; KEGG: dfe:Dfer_4621 protein of unknown function DUF820; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; regulatory protein MarR 4712170 10872627 Runsl_4082 Runella slithyformis DSM 19594 regulatory protein MarR YP_004657561.1 4711694 R 761193 CDS YP_004657562.1 338213507 10872628 complement(4712334..4712897) 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: sli:Slin_0993 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: tRNA/rRNA methyltransferase (SpoU); hypothetical protein 4712897 10872628 Runsl_4083 Runella slithyformis DSM 19594 hypothetical protein YP_004657562.1 4712334 R 761193 CDS YP_004657563.1 338213508 10872629 complement(4712944..4713729) 1 NC_015703.1 PFAM: SpoU rRNA Methylase; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: sli:Slin_0992 surface antigen (D15); PFAM: Bacterial surface antigen (D15); SPTR: Surface antigen (D15); tRNA/rRNA methyltransferase SpoU 4713729 10872629 Runsl_4084 Runella slithyformis DSM 19594 tRNA/rRNA methyltransferase SpoU YP_004657563.1 4712944 R 761193 CDS YP_004657564.1 338213509 10872630 4713765..4716506 1 NC_015703.1 PFAM: Surface antigen; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: cpi:Cpin_2831 outer membrane protein; PFAM: Outer membrane efflux protein; SPTR: outer membrane protein; surface antigen (D15) 4716506 10872630 Runsl_4085 Runella slithyformis DSM 19594 surface antigen (D15) YP_004657564.1 4713765 D 761193 CDS YP_004657565.1 338213510 10872631 complement(4716579..4717985) 1 NC_015703.1 PFAM: Outer membrane efflux protein; COGs: COG1566 Multidrug resistance efflux pump; KEGG: sli:Slin_3996 secretion protein HlyD; SPTR: Secretion protein HlyD; outer membrane efflux protein 4717985 10872631 Runsl_4086 Runella slithyformis DSM 19594 outer membrane efflux protein YP_004657565.1 4716579 R 761193 CDS YP_004657566.1 338213511 10872632 complement(4718039..4719406) 1 NC_015703.1 COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR003439; KEGG: rbi:RB2501_08265 HlyB/MsbA family ABC transporter; PFAM: ABC transporter-like; PRIAM: Xenobiotic-transporting ATPase; SPTR: HlyB/MsbA family ABC transporter; secretion protein HlyD 4719406 10872632 Runsl_4087 Runella slithyformis DSM 19594 secretion protein HlyD YP_004657566.1 4718039 R 761193 CDS YP_004657567.1 338213512 10872633 complement(4719433..4721619) 1 NC_015703.1 PFAM: ABC transporter; KEGG: sli:Slin_1651 hypothetical protein; SPTR: uncharacterized protein; xenobiotic-transporting ATPase 4721619 10872633 Runsl_4088 Runella slithyformis DSM 19594 xenobiotic-transporting ATPase YP_004657567.1 4719433 R 761193 CDS YP_004657568.1 338213513 10872634 4721797..4722537 1 NC_015703.1 InterPro IPR000209; KEGG: sli:Slin_1650 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Peptidase S8 and S53 subtilisin kexin sedolisin; hypothetical protein 4722537 10872634 Runsl_4089 Runella slithyformis DSM 19594 hypothetical protein YP_004657568.1 4721797 D 761193 CDS YP_004657569.1 338213514 10872635 4722578..4724281 1 NC_015703.1 PFAM: Subtilase; COGs: COG2761 dithiol-disulfide isomerase involved in polyketide biosynthesis; InterPro IPR001853; KEGG: rpd:RPD_1717 DsbA oxidoreductase; PFAM: DSBA oxidoreductase; SPTR: DSBA oxidoreductase; peptidase S8 and S53 subtilisin kexin sedolisin 4724281 10872635 Runsl_4090 Runella slithyformis DSM 19594 peptidase S8 and S53 subtilisin kexin sedolisin YP_004657569.1 4722578 D 761193 CDS YP_004657570.1 338213515 10872636 4724295..4724996 1 NC_015703.1 PFAM: DSBA-like thioredoxin domain; COGs: COG0228 Ribosomal protein S16; HAMAP: Ribosomal protein S16; InterPro IPR000307; KEGG: dfe:Dfer_2582 30S ribosomal protein S16; PFAM: Ribosomal protein S16; SPTR: 30S ribosomal protein S16; TIGRFAM: Ribosomal protein S16; DSBA oxidoreductase 4724996 10872636 Runsl_4091 Runella slithyformis DSM 19594 DSBA oxidoreductase YP_004657570.1 4724295 D 761193 CDS YP_004657571.1 338213516 10872637 4725111..4725635 1 NC_015703.1 PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; COGs: COG0806 RimM protein required for 16S rRNA processing; HAMAP: 16S rRNA processing protein RimM; InterPro IPR011961:IPR002676:IPR007903; KEGG: sli:Slin_1385 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel; SPTR: Ribosome maturation factor rimM; TIGRFAM: 16S rRNA processing protein RimM; 30S ribosomal protein S16 4725635 10872637 Runsl_4092 Runella slithyformis DSM 19594 30S ribosomal protein S16 YP_004657571.1 4725111 D 761193 CDS YP_004657572.1 338213517 10872638 4725705..4726274 1 NC_015703.1 PFAM: PRC-barrel domain; RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM; COGs: COG0336 tRNA-(guanine-N1)-methyltransferase; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; InterPro IPR002649:IPR016009; KEGG: sli:Slin_1386 tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; PRIAM: tRNA (guanine-N(1)-)-methyltransferase; SPTR: tRNA (guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; ribosome maturation factor rimM 4726274 10872638 Runsl_4093 Runella slithyformis DSM 19594 ribosome maturation factor rimM YP_004657572.1 4725705 D 761193 CDS YP_004657573.1 338213518 10872639 4726277..4726951 1 NC_015703.1 PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; COGs: COG0063 sugar kinase; InterPro IPR004443:IPR000631; KEGG: sli:Slin_1453 carbohydrate kinase, YjeF related protein; PFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; SPTR: Carbohydrate kinase, YjeF related protein; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; tRNA (guanine-N(1)-)-methyltransferase 4726951 10872639 Runsl_4094 Runella slithyformis DSM 19594 tRNA (guanine-N(1)-)-methyltransferase YP_004657573.1 4726277 D 761193 CDS YP_004657574.1 338213519 10872640 complement(4727323..4728846) 1 NC_015703.1 PFAM: YjeF-related protein N-terminus; Carbohydrate kinase; TIGRFAM: yjeF C-terminal region, hydroxyethylthiazole kinase-related; yjeF N-terminal region; COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869; KEGG: rbi:RB2501_13474 capsular polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein CapD-like; SPTR: Polysaccharide biosynthesis protein; hypothetical protein 4728846 10872640 Runsl_4095 Runella slithyformis DSM 19594 hypothetical protein YP_004657574.1 4727323 R 761193 CDS YP_004657575.1 338213520 10872641 complement(4728899..4730836) 1 NC_015703.1 PFAM: Polysaccharide biosynthesis protein; COGs: COG1090 nucleoside-diphosphate sugar epimerase; InterPro IPR010099:IPR001509:IPR013549; KEGG: dfe:Dfer_4158 domain of unknown function DUF1731; PFAM: Domain of unknown function DUF1731, C-terminal; NAD-dependent epimerase/dehydratase; SPTR: uncharacterized protein; polysaccharide biosynthesis protein CapD 4730836 10872641 Runsl_4096 Runella slithyformis DSM 19594 polysaccharide biosynthesis protein CapD YP_004657575.1 4728899 R 761193 CDS YP_004657576.1 338213521 10872642 complement(4730937..4731845) 1 NC_015703.1 PFAM: NAD dependent epimerase/dehydratase; Domain of unknown function (DUF1731); TIGRFAM: TIGR01777 family protein; hypothetical protein 4731845 10872642 Runsl_4097 Runella slithyformis DSM 19594 hypothetical protein YP_004657576.1 4730937 R 761193 CDS YP_004657577.1 338213522 10872643 complement(4732160..4732270) 1 NC_015703.1 COGs: COG0556 Helicase subunit of the DNA excision repair complex; HAMAP: Excinuclease ABC, B subunit; InterProIPR004807:IPR014001:IPR001650:IPR006935:IPR 001943; KEGG: sli:Slin_3612 excinuclease ABC subunit B; PFAM: DNA/RNA helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: UvrABC system protein B; TIGRFAM: Excinuclease ABC, B subunit; hypothetical protein 4732270 10872643 Runsl_4098 Runella slithyformis DSM 19594 hypothetical protein YP_004657577.1 4732160 R 761193 CDS YP_004657578.1 338213523 10872644 4732354..4734372 1 NC_015703.1 PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit; COGs: COG0824 thioesterase; InterPro IPR006683; KEGG: cph:Cpha266_1929 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily; UvrABC system protein B 4734372 10872644 Runsl_4099 Runella slithyformis DSM 19594 UvrABC system protein B YP_004657578.1 4732354 D 761193 CDS YP_004657579.1 338213524 10872645 4734394..4734804 1 NC_015703.1 PFAM: Acyl-ACP thioesterase; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family; InterPro IPR007712; KEGG: pcu:pc0990 hypothetical protein; PFAM: Plasmid stabilisation system; SPTR: Addiction module toxin, RelE/StbE family; thioesterase 4734804 10872645 Runsl_4100 Runella slithyformis DSM 19594 thioesterase YP_004657579.1 4734394 D 761193 CDS YP_004657580.1 338213525 10872646 4734869..4735126 1 NC_015703.1 PFAM: Plasmid stabilisation system protein; plasmid stabilization system 4735126 10872646 Runsl_4101 Runella slithyformis DSM 19594 plasmid stabilization system YP_004657580.1 4734869 D 761193 CDS YP_004657581.1 338213526 10872647 complement(4735117..4735254) 1 NC_015703.1 COGs: COG1186 Protein chain release factor B; InterPro IPR000352; KEGG: dfe:Dfer_4614 class I peptide chain release factor; PFAM: Class I peptide chain release factor; SPTR: Class I peptide chain release factor; hypothetical protein 4735254 10872647 Runsl_4102 Runella slithyformis DSM 19594 hypothetical protein YP_004657581.1 4735117 R 761193 CDS YP_004657582.1 338213527 10872648 4735363..4735767 1 NC_015703.1 PFAM: RF-1 domain; InterPro IPR000182; KEGG: sli:Slin_1787 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; class I peptide chain release factor 4735767 10872648 Runsl_4103 Runella slithyformis DSM 19594 class I peptide chain release factor YP_004657582.1 4735363 D 761193 CDS YP_004657583.1 338213528 10872649 4735771..4736310 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; N-acetyltransferase GCN5 4736310 10872649 Runsl_4104 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004657583.1 4735771 D 761193 CDS YP_004657584.1 338213529 10872650 complement(4736315..4736494) 1 NC_015703.1 hypothetical protein 4736494 10872650 Runsl_4105 Runella slithyformis DSM 19594 hypothetical protein YP_004657584.1 4736315 R 761193 CDS YP_004657585.1 338213530 10872651 complement(4736579..4737517) 1 NC_015703.1 COGs: COG0157 Nicotinate-nucleotide pyrophosphorylase; InterPro IPR004393:IPR002638; KEGG: sli:Slin_5167 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; PRIAM: Nicotinate-nucleotide diphosphorylase (carboxylating); SPTR: Nicotinate-nucleotide pyrophosphorylase; TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; hypothetical protein 4737517 10872651 Runsl_4106 Runella slithyformis DSM 19594 hypothetical protein YP_004657585.1 4736579 R 761193 CDS YP_004657586.1 338213531 10872652 4737852..4738685 1 NC_015703.1 PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; KEGG: sli:Slin_0397 hypothetical protein; SPTR: uncharacterized protein; nicotinate-nucleotide pyrophosphorylase 4738685 10872652 Runsl_4107 Runella slithyformis DSM 19594 nicotinate-nucleotide pyrophosphorylase YP_004657586.1 4737852 D 761193 CDS YP_004657587.1 338213532 10872653 complement(4738814..4739551) 1 NC_015703.1 hypothetical protein 4739551 10872653 Runsl_4108 Runella slithyformis DSM 19594 hypothetical protein YP_004657587.1 4738814 R 761193 CDS YP_004657588.1 338213533 10872654 4739905..4740309 1 NC_015703.1 KEGG: dfe:Dfer_2961 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4740309 10872654 Runsl_4109 Runella slithyformis DSM 19594 hypothetical protein YP_004657588.1 4739905 D 761193 CDS YP_004657589.1 338213534 10872655 4740319..4740972 1 NC_015703.1 hypothetical protein 4740972 10872655 Runsl_4110 Runella slithyformis DSM 19594 hypothetical protein YP_004657589.1 4740319 D 761193 CDS YP_004657590.1 338213535 10872656 4741069..4741530 1 NC_015703.1 COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594:IPR011712; KEGG: sli:Slin_5844 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; SMART: ATP-binding region, ATPase-like; SPTR: Histidine kinase; hypothetical protein 4741530 10872656 Runsl_4111 Runella slithyformis DSM 19594 hypothetical protein YP_004657590.1 4741069 D 761193 CDS YP_004657591.1 338213536 10872657 4741695..4742525 1 NC_015703.1 PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: sli:Slin_5845 LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SPTR: Two component transcriptional regulator, LuxR family; signal transduction histidine kinase 4742525 10872657 Runsl_4112 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004657591.1 4741695 D 761193 CDS YP_004657592.1 338213537 10872658 4742648..4743298 1 NC_015703.1 PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: dfe:Dfer_0898 linoleoyl-CoA desaturase; PFAM: Fatty acid desaturase, type 1; PRIAM: Linoleoyl-CoA desaturase; SPTR: Linoleoyl-CoA desaturase; LuxR family transcriptional regulator 4743298 10872658 Runsl_4113 Runella slithyformis DSM 19594 LuxR family transcriptional regulator YP_004657592.1 4742648 D 761193 CDS YP_004657593.1 338213538 10872659 complement(4743313..4744428) 1 NC_015703.1 PFAM: Fatty acid desaturase; KEGG: sli:Slin_2263 hypothetical protein; SPTR: uncharacterized protein; Linoleoyl-CoA desaturase 4744428 10872659 Runsl_4114 Runella slithyformis DSM 19594 Linoleoyl-CoA desaturase YP_004657593.1 4743313 R 761193 CDS YP_004657594.1 338213539 10872660 4744626..4745267 1 NC_015703.1 COGs: COG0787 Alanine racemase; HAMAP: Alanine racemase; InterPro IPR000821:IPR013221:IPR001608:IPR011079; KEGG: dfe:Dfer_4988 bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; PFAM: Alanine racemase, N-terminal; Mur ligase, central; Alanine racemase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase., Alanine racemase; SPTR: Alanine racemase; TIGRFAM: Alanine racemase; hypothetical protein 4745267 10872660 Runsl_4115 Runella slithyformis DSM 19594 hypothetical protein YP_004657594.1 4744626 D 761193 CDS YP_004657595.1 338213540 10872661 complement(4745274..4747772) 1 NC_015703.1 PFAM: Alanine racemase, C-terminal domain; Alanine racemase, N-terminal domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; alanine racemase; InterPro IPR004360; KEGG: cpi:Cpin_1769 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; alanine racemase 4747772 10872661 Runsl_4116 Runella slithyformis DSM 19594 alanine racemase YP_004657595.1 4745274 R 761193 CDS YP_004657596.1 338213541 10872662 complement(4747866..4748252) 1 NC_015703.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; KEGG: ppn:Palpr_0253 lipoprotein; SPTR: lipoprotein; Glyoxalase/bleomycin resistance protein/dioxygenase 4748252 10872662 Runsl_4117 Runella slithyformis DSM 19594 Glyoxalase/bleomycin resistance protein/dioxygenase YP_004657596.1 4747866 R 761193 CDS YP_004657597.1 338213542 10872663 complement(4748392..4749114) 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 4749114 10872663 Runsl_4118 Runella slithyformis DSM 19594 hypothetical protein YP_004657597.1 4748392 R 761193 CDS YP_004657598.1 338213543 10872665 4750203..4752968 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB-dependent receptor 4752968 10872665 Runsl_4120 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004657598.1 4750203 D 761193 CDS YP_004657599.1 338213544 10872666 4753214..4753405 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 4753405 10872666 Runsl_4121 Runella slithyformis DSM 19594 hypothetical protein YP_004657599.1 4753214 D 761193 CDS YP_004657600.1 338213545 10872668 4754773..4755078 1 NC_015703.1 COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance; InterPro IPR005496; KEGG: sli:Slin_6503 integral membrane protein TerC; PFAM: Integral membrane protein TerC; SPTR: Integral membrane protein TerC; hypothetical protein 4755078 10872668 Runsl_4123 Runella slithyformis DSM 19594 hypothetical protein YP_004657600.1 4754773 D 761193 CDS YP_004657601.1 338213546 10872669 complement(4755131..4755961) 1 NC_015703.1 PFAM: Integral membrane protein TerC family; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: cpi:Cpin_0778 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Kynurenine--oxoglutarate transaminase; SPTR: Aminotransferase class I and II; integral membrane protein TerC 4755961 10872669 Runsl_4124 Runella slithyformis DSM 19594 integral membrane protein TerC YP_004657601.1 4755131 R 761193 CDS YP_004657602.1 338213547 10872670 4756130..4757275 1 NC_015703.1 PFAM: Aminotransferase class I and II; COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: dfe:Dfer_4179 NLP/P60 protein; PFAM: NLP/P60; SPTR: NLP/P60 protein; kynurenine--oxoglutarate transaminase 4757275 10872670 Runsl_4125 Runella slithyformis DSM 19594 kynurenine--oxoglutarate transaminase YP_004657602.1 4756130 D 761193 CDS YP_004657603.1 338213548 10872671 complement(4757342..4757899) 1 NC_015703.1 PFAM: NlpC/P60 family; InterPro IPR001845; KEGG: sli:Slin_3936 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family; NLP/P60 protein 4757899 10872671 Runsl_4126 Runella slithyformis DSM 19594 NLP/P60 protein YP_004657603.1 4757342 R 761193 CDS YP_004657604.1 338213549 10872672 4758070..4758396 1 NC_015703.1 PFAM: Bacterial regulatory protein, arsR family; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216:IPR000182; KEGG: sli:Slin_3937 methyltransferase type 11; PFAM: Methyltransferase type 11; GCN5-related N-acetyltransferase; SPTR: Methyltransferase type 11; regulatory protein ArsR 4758396 10872672 Runsl_4127 Runella slithyformis DSM 19594 regulatory protein ArsR YP_004657604.1 4758070 D 761193 CDS YP_004657605.1 338213550 10872673 4758447..4759808 1 NC_015703.1 PFAM: Methyltransferase domain; Acetyltransferase (GNAT) family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: sli:Slin_4971 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; type 11 methyltransferase 4759808 10872673 Runsl_4128 Runella slithyformis DSM 19594 type 11 methyltransferase YP_004657605.1 4758447 D 761193 CDS YP_004657606.1 338213551 10872674 complement(4759827..4760702) 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR008775; KEGG: sli:Slin_4972 phytanoyl-CoA dioxygenase; PFAM: Phytanoyl-CoA dioxygenase; SPTR: Phytanoyl-CoA dioxygenase; AraC family transcriptional regulator 4760702 10872674 Runsl_4129 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004657606.1 4759827 R 761193 CDS YP_004657607.1 338213552 10872675 4760875..4761702 1 NC_015703.1 PFAM: Phytanoyl-CoA dioxygenase (PhyH); COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: sli:Slin_5516 phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; SPTR: Competence protein; phytanoyl-CoA dioxygenase 4761702 10872675 Runsl_4130 Runella slithyformis DSM 19594 phytanoyl-CoA dioxygenase YP_004657607.1 4760875 D 761193 CDS YP_004657608.1 338213553 10872676 4761763..4762470 1 NC_015703.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein; COGs: COG1262 conserved hypothetical protein; InterPro IPR019868:IPR005532; KEGG: sli:Slin_5515 gliding motility-associated lipoprotein GldJ; PFAM: Sulphatase-modifying factor; SPTR: Gliding motility-associated lipoprotein GldJ; TIGRFAM: Gliding motility-associated lipoprotein GldJ-short; phosphoribosyltransferase 4762470 10872676 Runsl_4131 Runella slithyformis DSM 19594 phosphoribosyltransferase YP_004657608.1 4761763 D 761193 CDS YP_004657609.1 338213554 10872677 complement(4762537..4763844) 1 NC_015703.1 PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: gliding motility-associated lipoprotein GldJ; COGs: COG0817 Holliday junction resolvasome endonuclease subunit; HAMAP: Crossover junction endodeoxyribonuclease RuvC; InterPro IPR002176; KEGG: dfe:Dfer_2024 crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; PRIAM: Crossover junction endodeoxyribonuclease; SPTR: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; gliding motility-associated lipoprotein GldJ 4763844 10872677 Runsl_4132 Runella slithyformis DSM 19594 gliding motility-associated lipoprotein GldJ YP_004657609.1 4762537 R 761193 CDS YP_004657610.1 338213555 10872678 complement(4764254..4764844) 1 NC_015703.1 PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; KEGG: dfe:Dfer_2025 hypothetical protein; SPTR: uncharacterized protein; Crossover junction endodeoxyribonuclease ruvC 4764844 10872678 Runsl_4133 Runella slithyformis DSM 19594 Crossover junction endodeoxyribonuclease ruvC YP_004657610.1 4764254 R 761193 CDS YP_004657611.1 338213556 10872679 4764846..4765844 1 NC_015703.1 PFAM: Uncharacterised protein family (UPF0104); COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_2238 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; hypothetical protein 4765844 10872679 Runsl_4134 Runella slithyformis DSM 19594 hypothetical protein YP_004657611.1 4764846 D 761193 CDS YP_004657612.1 338213557 10872680 4765890..4767017 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: sli:Slin_2237 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; family 2 glycosyl transferase 4767017 10872680 Runsl_4135 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004657612.1 4765890 D 761193 CDS YP_004657613.1 338213558 10872681 4767057..4767731 1 NC_015703.1 PFAM: Polysaccharide deacetylase; KEGG: acl:ACL_0165 integral membrane protein; SPTR: Integral membrane protein; polysaccharide deacetylase 4767731 10872681 Runsl_4136 Runella slithyformis DSM 19594 polysaccharide deacetylase YP_004657613.1 4767057 D 761193 CDS YP_004657614.1 338213559 10872682 complement(4767748..4768422) 1 NC_015703.1 PFAM: Protein of unknown function (DUF3267); COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076; KEGG: sli:Slin_4949 glucose-methanol-choline oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; hypothetical protein 4768422 10872682 Runsl_4137 Runella slithyformis DSM 19594 hypothetical protein YP_004657614.1 4767748 R 761193 CDS YP_004657615.1 338213560 10872683 complement(4768463..4770187) 1 NC_015703.1 PFAM: GMC oxidoreductase; COGs: COG0714 MoxR-like ATPase; InterPro IPR003593:IPR011704; KEGG: pfo:Pfl01_1409 ATPase; PFAM: ATPase associated with various cellular activities, AAA-5; SMART: ATPase, AAA+ type, core; SPTR: ATPase, AAA family; FAD dependent oxidoreductase 4770187 10872683 Runsl_4138 Runella slithyformis DSM 19594 FAD dependent oxidoreductase YP_004657615.1 4768463 R 761193 CDS YP_004657616.1 338213561 10872684 4770387..4771235 1 NC_015703.1 PFAM: ATPase associated with various cellular activities (AAA); COGs: COG3825 conserved hypothetical protein; KEGG: reh:H16_A1116 von Willebrand factor type A domain-containing protein; SPTR: uncharacterized protein; ATPase 4771235 10872684 Runsl_4139 Runella slithyformis DSM 19594 ATPase YP_004657616.1 4770387 D 761193 CDS YP_004657617.1 338213562 10872685 4771282..4772484 1 NC_015703.1 PFAM: VWA domain containing CoxE-like protein; COGs: COG1385 conserved hypothetical protein; InterPro IPR006700; KEGG: sli:Slin_1352 hypothetical protein; PFAM: Ribosomal RNA small subunit methyltransferase E; SPTR: uncharacterized protein; TIGRFAM: Ribosomal RNA small subunit methyltransferase E; von Willebrand factor A 4772484 10872685 Runsl_4140 Runella slithyformis DSM 19594 von Willebrand factor A YP_004657617.1 4771282 D 761193 CDS YP_004657618.1 338213563 10872686 4772559..4773263 1 NC_015703.1 PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: dfe:Dfer_1502 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; SPTR: Response regulator; ribosomal RNA small subunit methyltransferase E 4773263 10872686 Runsl_4141 Runella slithyformis DSM 19594 ribosomal RNA small subunit methyltransferase E YP_004657618.1 4772559 D 761193 CDS YP_004657619.1 338213564 10872687 4773394..4773798 1 NC_015703.1 PFAM: LytTr DNA-binding domain; KEGG: sli:Slin_1353 hypothetical protein; SPTR: uncharacterized protein; response regulator receiver protein 4773798 10872687 Runsl_4142 Runella slithyformis DSM 19594 response regulator receiver protein YP_004657619.1 4773394 D 761193 CDS YP_004657620.1 338213565 10872688 4773900..4774574 1 NC_015703.1 COGs: COG1398 Fatty-acid desaturase; InterPro IPR005804; KEGG: sli:Slin_1354 fatty acid desaturase; PFAM: Fatty acid desaturase, type 1; SPTR: Fatty acid desaturase; hypothetical protein 4774574 10872688 Runsl_4143 Runella slithyformis DSM 19594 hypothetical protein YP_004657620.1 4773900 D 761193 CDS YP_004657621.1 338213566 10872689 4774664..4775452 1 NC_015703.1 PFAM: Fatty acid desaturase; COGs: COG4502 conserved hypothetical protein; InterPro IPR010708; KEGG: dfe:Dfer_0454 5 nucleotidase deoxy cytosolic type C; SPTR: 5 nucleotidase deoxy cytosolic type C; fatty acid desaturase 4775452 10872689 Runsl_4144 Runella slithyformis DSM 19594 fatty acid desaturase YP_004657621.1 4774664 D 761193 CDS YP_004657622.1 338213567 10872690 complement(4775514..4776041) 1 NC_015703.1 PFAM: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); KEGG: sli:Slin_3865 hypothetical protein; SPTR: uncharacterized protein; 5' nucleotidase 4776041 10872690 Runsl_4145 Runella slithyformis DSM 19594 5' nucleotidase YP_004657622.1 4775514 R 761193 CDS YP_004657623.1 338213568 10872691 4776211..4778022 1 NC_015703.1 COGs: COG0045 Succinyl-CoA synthetase beta subunit; HAMAP: Succinyl-CoA ligase [ADP-forming] subunit beta; InterPro IPR005809:IPR013650:IPR005811; KEGG: dfe:Dfer_2736 succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; PRIAM: Succinate--CoA ligase (ADP-forming); SPTR: Succinyl-CoA ligase [ADP-forming] subunit beta; TIGRFAM: Succinyl-CoA synthetase, beta subunit; hypothetical protein 4778022 10872691 Runsl_4146 Runella slithyformis DSM 19594 hypothetical protein YP_004657623.1 4776211 D 761193 CDS YP_004657624.1 338213569 10872692 complement(4778083..4779309) 1 NC_015703.1 PFAM: CoA-ligase; ATP-grasp domain; TIGRFAM: succinyl-CoA synthetase, beta subunit; COGs: COG4330 membrane protein; InterPro IPR009793; KEGG: dfe:Dfer_0075 protein of unknown function DUF1361; PFAM: Protein of unknown function DUF1361; SPTR: uncharacterized protein; succinyl-CoA ligase (ADP-forming) subunit beta 4779309 10872692 Runsl_4147 Runella slithyformis DSM 19594 succinyl-CoA ligase (ADP-forming) subunit beta YP_004657624.1 4778083 R 761193 CDS YP_004657625.1 338213570 10872693 4779751..4780470 1 NC_015703.1 PFAM: Protein of unknown function (DUF1361); COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011663; KEGG: bpo:BP951000_1878 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated; SMART: HTH transcriptional regulator, GntR; SPTR: UTRA domain-containing protein; hypothetical protein 4780470 10872693 Runsl_4148 Runella slithyformis DSM 19594 hypothetical protein YP_004657625.1 4779751 D 761193 CDS YP_004657626.1 338213571 10872694 complement(4780835..4781554) 1 NC_015703.1 PFAM: Bacterial regulatory proteins, gntR family; UTRA domain; COGs: COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); HAMAP: NAD(P)H-quinone oxidoreductase subunit 4L; InterPro IPR001133; KEGG: sli:Slin_4911 NADH-ubiquinone oxidoreductase chain 4L; PFAM: NADH:ubiquinone/quinone oxidoreductase, chain 4L; SPTR: NADH-quinone oxidoreductase subunit K 1; GntR family transcriptional regulator 4781554 10872694 Runsl_4149 Runella slithyformis DSM 19594 GntR family transcriptional regulator YP_004657626.1 4780835 R 761193 CDS YP_004657627.1 338213572 10872695 4781622..4781936 1 NC_015703.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; KEGG: sli:Slin_3137 hypothetical protein; SPTR: uncharacterized protein; NAD(P)H-quinone oxidoreductase subunit 4L 4781936 10872695 Runsl_4150 Runella slithyformis DSM 19594 NAD(P)H-quinone oxidoreductase subunit 4L YP_004657627.1 4781622 D 761193 CDS YP_004657628.1 338213573 10872696 4782029..4783315 1 NC_015703.1 hypothetical protein 4783315 10872696 Runsl_4151 Runella slithyformis DSM 19594 hypothetical protein YP_004657628.1 4782029 D 761193 CDS YP_004657629.1 338213574 10872697 4783331..4783495 1 NC_015703.1 KEGG: dfe:Dfer_0219 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4783495 10872697 Runsl_4152 Runella slithyformis DSM 19594 hypothetical protein YP_004657629.1 4783331 D 761193 CDS YP_004657630.1 338213575 10872698 complement(4783492..4785066) 1 NC_015703.1 PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX); KEGG: sli:Slin_2311 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4785066 10872698 Runsl_4153 Runella slithyformis DSM 19594 hypothetical protein YP_004657630.1 4783492 R 761193 CDS YP_004657631.1 338213576 10872699 complement(4785276..4786526) 1 NC_015703.1 COGs: COG0442 Prolyl-tRNA synthetase; HAMAP: Prolyl-tRNA synthetase, class IIa, prokaryotic-type; InterPro IPR004499:IPR002314:IPR004154:IPR016061; KEGG: dfe:Dfer_0217 prolyl-tRNA synthetase; PFAM: Prolyl-tRNA synthetase, class II, C-terminal; Anticodon-binding; Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; PRIAM: Proline--tRNA ligase; SPTR: Prolyl-tRNA synthetase; TIGRFAM: Prolyl-tRNA synthetase, class IIa, prokaryotic-type; hypothetical protein 4786526 10872699 Runsl_4154 Runella slithyformis DSM 19594 hypothetical protein YP_004657631.1 4785276 R 761193 CDS YP_004657632.1 338213577 10872700 4786937..4788412 1 NC_015703.1 PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); Prolyl-tRNA synthetase, C-terminal; TIGRFAM: prolyl-tRNA synthetase, family I; COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: sli:Slin_2307 peptidylprolyl isomerase FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; prolyl-tRNA synthetase 4788412 10872700 Runsl_4155 Runella slithyformis DSM 19594 prolyl-tRNA synthetase YP_004657632.1 4786937 D 761193 CDS YP_004657633.1 338213578 10872701 4788511..4788942 1 NC_015703.1 PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; COGs: COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); HAMAP: NAD(P)H-quinone oxidoreductase subunit 3; InterPro IPR000440; KEGG: dfe:Dfer_2467 NADH-ubiquinone/plastoquinone oxidoreductase chain 3; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3; SPTR: NADH-quinone oxidoreductase subunit; FKBP-type peptidylprolyl isomerase 4788942 10872701 Runsl_4156 Runella slithyformis DSM 19594 FKBP-type peptidylprolyl isomerase YP_004657633.1 4788511 D 761193 CDS YP_004657634.1 338213579 10872702 complement(4789033..4789500) 1 NC_015703.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; COGs: COG3968 Uncharacterized protein related to glutamine synthetase; InterPro IPR008146; KEGG: sli:Slin_2431 glutamine synthetase; PFAM: Glutamine synthetase, catalytic region; SPTR: Glutamine synthetase catalytic region; NAD(P)H-quinone oxidoreductase subunit 3 4789500 10872702 Runsl_4157 Runella slithyformis DSM 19594 NAD(P)H-quinone oxidoreductase subunit 3 YP_004657634.1 4789033 R 761193 CDS YP_004657635.1 338213580 10872703 complement(4789646..4791826) 1 NC_015703.1 PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase type III N terminal; manually curated; glutamine synthetase 4791826 10872703 Runsl_4158 Runella slithyformis DSM 19594 glutamine synthetase YP_004657635.1 4789646 R 761193 CDS YP_004657636.1 338213581 10872705 4792288..4793622 1 NC_015703.1 PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme; radical SAM methylthiotransferase, MiaB/RimO family; KEGG: mtt:Ftrac_1186 hypothetical protein; SPTR: uncharacterized protein; MiaB-like tRNA modifying protein 4793622 10872705 Runsl_4160 Runella slithyformis DSM 19594 MiaB-like tRNA modifying protein YP_004657636.1 4792288 D 761193 CDS YP_004657637.1 338213582 10872706 complement(4793648..4794007) 1 NC_015703.1 KEGG: dfe:Dfer_5063 NUMOD4 domain-containing protein; SPTR: NUMOD4 domain-containing protein; hypothetical protein 4794007 10872706 Runsl_4161 Runella slithyformis DSM 19594 hypothetical protein YP_004657637.1 4793648 R 761193 CDS YP_004657638.1 338213583 10872707 4794127..4794699 1 NC_015703.1 PFAM: NUMOD4 motif; COGs: COG2896 Molybdenum cofactor biosynthesis protein; InterPro IPR013483:IPR006638:IPR007197:IPR010505; KEGG: sli:Slin_4668 molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM; Molybdenum cofactor synthesis C-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: Molybdenum cofactor biosynthesis protein A; TIGRFAM: Molybdenum cofactor biosynthesis protein A; NUMOD4 domain-containing protein 4794699 10872707 Runsl_4162 Runella slithyformis DSM 19594 NUMOD4 domain-containing protein YP_004657638.1 4794127 D 761193 CDS YP_004657639.1 338213584 10872708 complement(4794711..4795703) 1 NC_015703.1 PFAM: Molybdenum Cofactor Synthesis C; Radical SAM superfamily; TIGRFAM: molybdenum cofactor biosynthesis protein A, bacterial; COGs: COG1278 Cold shock protein; InterPro IPR011129:IPR002059; KEGG: ppn:Palpr_1708 cold-shock DNA-binding protein family; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding domain protein; molybdenum cofactor biosynthesis protein A 4795703 10872708 Runsl_4163 Runella slithyformis DSM 19594 molybdenum cofactor biosynthesis protein A YP_004657639.1 4794711 R 761193 CDS YP_004657640.1 338213585 10872709 4795889..4796080 1 NC_015703.1 PFAM: 'Cold-shock' DNA-binding domain; SPTR: Transposase IS4 family protein; cold-shock DNA-binding domain-containing protein 4796080 10872709 Runsl_4164 Runella slithyformis DSM 19594 cold-shock DNA-binding domain-containing protein YP_004657640.1 4795889 D 761193 CDS YP_004657641.1 338213586 10872710 4796240..4797586 1 NC_015703.1 COGs: COG0173 Aspartyl-tRNA synthetase; InterPro IPR004524:IPR004365:IPR004364:IPR004115; KEGG: sli:Slin_4178 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain; PRIAM: Aspartate--tRNA ligase; SPTR: Aspartyl-tRNA synthetase; TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; hypothetical protein 4797586 10872710 Runsl_4165 Runella slithyformis DSM 19594 hypothetical protein YP_004657641.1 4796240 D 761193 CDS YP_004657642.1 338213587 10872711 4797742..4799499 1 NC_015703.1 PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type; aspartyl-tRNA synthetase 4799499 10872711 Runsl_4166 Runella slithyformis DSM 19594 aspartyl-tRNA synthetase YP_004657642.1 4797742 D 761193 CDS YP_004657643.1 338213588 10872712 4799543..4799836 1 NC_015703.1 KEGG: dfe:Dfer_3246 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4799836 10872712 Runsl_4167 Runella slithyformis DSM 19594 hypothetical protein YP_004657643.1 4799543 D 761193 CDS YP_004657644.1 338213589 10872713 4800022..4801185 1 NC_015703.1 KEGG: dfe:Dfer_3247 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4801185 10872713 Runsl_4168 Runella slithyformis DSM 19594 hypothetical protein YP_004657644.1 4800022 D 761193 CDS YP_004657645.1 338213590 10872714 4801234..4802661 1 NC_015703.1 KEGG: dfe:Dfer_4748 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4802661 10872714 Runsl_4169 Runella slithyformis DSM 19594 hypothetical protein YP_004657645.1 4801234 D 761193 CDS YP_004657646.1 338213591 10872715 complement(4802771..4803607) 1 NC_015703.1 InterPro IPR012910; KEGG: dfe:Dfer_4749 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; hypothetical protein 4803607 10872715 Runsl_4170 Runella slithyformis DSM 19594 hypothetical protein YP_004657646.1 4802771 R 761193 CDS YP_004657647.1 338213592 10872716 complement(4803612..4805948) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB-dependent receptor plug 4805948 10872716 Runsl_4171 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004657647.1 4803612 R 761193 CDS YP_004657648.1 338213593 10872717 complement(4805967..4806461) 1 NC_015703.1 hypothetical protein 4806461 10872717 Runsl_4172 Runella slithyformis DSM 19594 hypothetical protein YP_004657648.1 4805967 R 761193 CDS YP_004657649.1 338213594 10872718 complement(4806661..4807380) 1 NC_015703.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: psn:Pedsa_0209 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; hypothetical protein 4807380 10872718 Runsl_4173 Runella slithyformis DSM 19594 hypothetical protein YP_004657649.1 4806661 R 761193 CDS YP_004657650.1 338213595 10872719 complement(4807566..4808141) 1 NC_015703.1 PFAM: Cyclic nucleotide-binding domain; InterPro IPR000792; PFAM: Transcription regulator LuxR, C-terminal; Crp/Fnr family transcriptional regulator 4808141 10872719 Runsl_4174 Runella slithyformis DSM 19594 Crp/Fnr family transcriptional regulator YP_004657650.1 4807566 R 761193 CDS YP_004657651.1 338213596 10872720 complement(4808398..4808724) 1 NC_015703.1 PFAM: Bacterial regulatory proteins, luxR family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_1571 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; LuxR family transcriptional regulator 4808724 10872720 Runsl_4175 Runella slithyformis DSM 19594 LuxR family transcriptional regulator YP_004657651.1 4808398 R 761193 CDS YP_004657652.1 338213597 10872721 complement(4809035..4811224) 1 NC_015703.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TonB-dependent receptor 4811224 10872721 Runsl_4176 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004657652.1 4809035 R 761193 CDS YP_004657653.1 338213598 10872722 complement(4811376..4811891) 1 NC_015703.1 COGs: COG0622 phosphoesterase; InterPro IPR000979:IPR004843; KEGG: dfe:Dfer_2380 phosphodiesterase, MJ0936 family; PFAM: Metallophosphoesterase; SPTR: Phosphodiesterase, MJ0936 family; TIGRFAM: Uncharacterised protein family UPF0025; hypothetical protein 4811891 10872722 Runsl_4177 Runella slithyformis DSM 19594 hypothetical protein YP_004657653.1 4811376 R 761193 CDS YP_004657654.1 338213599 10872723 complement(4811901..4812410) 1 NC_015703.1 PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family; COGs: COG1914 Mn2+ and Fe2+ transporter of the NRAMP family; KEGG: dfe:Dfer_4281 transmembrane transport protein; SPTR: transmembrane transport protein; phosphodiesterase 4812410 10872723 Runsl_4178 Runella slithyformis DSM 19594 phosphodiesterase YP_004657654.1 4811901 R 761193 CDS YP_004657655.1 338213600 10872724 complement(4812437..4813681) 1 NC_015703.1 PFAM: Natural resistance-associated macrophage protein; InterPro IPR008815; KEGG: psl:Psta_2484 S23 ribosomal protein; PFAM: 23S rRNA-associated protein; SPTR: S23 ribosomal protein; transmembrane transport protein 4813681 10872724 Runsl_4179 Runella slithyformis DSM 19594 transmembrane transport protein YP_004657655.1 4812437 R 761193 CDS YP_004657656.1 338213601 10872725 complement(4813662..4814024) 1 NC_015703.1 PFAM: S23 ribosomal protein; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: sli:Slin_2999 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: o-succinylbenzoate--CoA ligase; SPTR: AMP-dependent synthetase and ligase; S23 ribosomal protein 4814024 10872725 Runsl_4180 Runella slithyformis DSM 19594 S23 ribosomal protein YP_004657656.1 4813662 R 761193 CDS YP_004657657.1 338213602 10872726 complement(4814078..4815760) 1 NC_015703.1 PFAM: AMP-binding enzyme; KEGG: dfe:Dfer_2586 hypothetical protein; SPTR: uncharacterized protein; o-succinylbenzoate--CoA ligase 4815760 10872726 Runsl_4181 Runella slithyformis DSM 19594 o-succinylbenzoate--CoA ligase YP_004657657.1 4814078 R 761193 CDS YP_004657658.1 338213603 10872727 complement(4815953..4816945) 1 NC_015703.1 KEGG: sli:Slin_1374 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4816945 10872727 Runsl_4182 Runella slithyformis DSM 19594 hypothetical protein YP_004657658.1 4815953 R 761193 CDS YP_004657659.1 338213604 10872728 complement(4816912..4818996) 1 NC_015703.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR011284:IPR002198; KEGG: sli:Slin_1373 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: 3-oxoacyl-(Acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; hypothetical protein 4818996 10872728 Runsl_4183 Runella slithyformis DSM 19594 hypothetical protein YP_004657659.1 4816912 R 761193 CDS YP_004657660.1 338213605 10872729 complement(4819133..4819879) 1 NC_015703.1 PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; KEGG: cts:Ctha_1277 hypothetical protein; SPTR: uncharacterized protein; 3-oxoacyl-ACP reductase 4819879 10872729 Runsl_4184 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004657660.1 4819133 R 761193 CDS YP_004657661.1 338213606 10872730 complement(4819916..4820497) 1 NC_015703.1 COGs: COG4637 ATPase; InterPro IPR003395; KEGG: cts:Ctha_1278 SMC domain-containing protein; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: SMC domain protein; hypothetical protein 4820497 10872730 Runsl_4185 Runella slithyformis DSM 19594 hypothetical protein YP_004657661.1 4819916 R 761193 CDS YP_004657662.1 338213607 10872731 complement(4820494..4821690) 1 NC_015703.1 PFAM: RecF/RecN/SMC N terminal domain; COGs: COG0279 Phosphoheptose isomerase; HAMAP: Phosphoheptose isomerase; InterPro IPR020620; KEGG: cpi:Cpin_3114 phosphoheptose isomerase; SPTR: Phosphoheptose isomerase; SMC domain-containing protein 4821690 10872731 Runsl_4186 Runella slithyformis DSM 19594 SMC domain-containing protein YP_004657662.1 4820494 R 761193 CDS YP_004657663.1 338213608 10872732 complement(4821721..4822296) 1 NC_015703.1 TIGRFAM: phosphoheptose isomerase; COGs: COG3281 Uncharacterized protein probably involved in trehalose biosynthesis; KEGG: sli:Slin_0399 trehalose synthase-fused maltokinase-like protein; SPTR: Trehalose synthase-fused maltokinase-like protein; phosphoheptose isomerase 4822296 10872732 Runsl_4187 Runella slithyformis DSM 19594 phosphoheptose isomerase YP_004657663.1 4821721 R 761193 CDS YP_004657664.1 338213609 10872733 complement(4822366..4823922) 1 NC_015703.1 TIGRFAM: trehalose synthase-fused probable maltokinase; COGs: COG2936 acyl esterase; InterPro IPR005674:IPR000383:IPR013736; KEGG: shg:Sph21_2808 hydrolase CocE/NonD family protein; SPTR: Hydrolase CocE/NonD family protein; TIGRFAM: CocE/NonD hydrolase; trehalose synthase-fused maltokinase-like protein 4823922 10872733 Runsl_4188 Runella slithyformis DSM 19594 trehalose synthase-fused maltokinase-like protein YP_004657664.1 4822366 R 761193 CDS YP_004657665.1 338213610 10872734 complement(4823959..4825818) 1 NC_015703.1 PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: hydrolase, CocE/NonD family; COGs: COG1217 membrane GTPase involved in stress response; InterProIPR005225:IPR006298:IPR000795:IPR004161:IPR 000640; KEGG: dfe:Dfer_3399 GTP-binding protein TypA; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; SPTR: GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; hydrolase 4825818 10872734 Runsl_4189 Runella slithyformis DSM 19594 hydrolase YP_004657665.1 4823959 R 761193 CDS YP_004657666.1 338213611 10872735 4826383..4828197 1 NC_015703.1 PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain; GTP-binding protein TypA 4828197 10872735 Runsl_4190 Runella slithyformis DSM 19594 GTP-binding protein TypA YP_004657666.1 4826383 D 761193 CDS YP_004657667.1 338213612 10872736 complement(4828259..4828471) 1 NC_015703.1 hypothetical protein 4828471 10872736 Runsl_4191 Runella slithyformis DSM 19594 hypothetical protein YP_004657667.1 4828259 R 761193 CDS YP_004657668.1 338213613 10872737 complement(4828534..4828803) 1 NC_015703.1 hypothetical protein 4828803 10872737 Runsl_4192 Runella slithyformis DSM 19594 hypothetical protein YP_004657668.1 4828534 R 761193 CDS YP_004657669.1 338213614 10872738 4829044..4829451 1 NC_015703.1 COGs: COG0135 Phosphoribosylanthranilate isomerase; InterPro IPR001240; KEGG: sli:Slin_0371 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); SPTR: N-(5'-phosphoribosyl)anthranilate isomerase; hypothetical protein 4829451 10872738 Runsl_4193 Runella slithyformis DSM 19594 hypothetical protein YP_004657669.1 4829044 D 761193 CDS YP_004657670.1 338213615 10872739 complement(4829563..4830210) 1 NC_015703.1 PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: dfe:Dfer_2381 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28; N-(5'-phosphoribosyl)anthranilate isomerase 4830210 10872739 Runsl_4194 Runella slithyformis DSM 19594 N-(5'-phosphoribosyl)anthranilate isomerase YP_004657670.1 4829563 R 761193 CDS YP_004657671.1 338213616 10872740 complement(4830213..4831424) 1 NC_015703.1 PFAM: Peptidase M28; COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: phe:Phep_0042 mechanosensitive ion channel MscS; PFAM: Mechanosensitive ion channel MscS; SPTR: MscS Mechanosensitive ion channel; peptidase M28 4831424 10872740 Runsl_4195 Runella slithyformis DSM 19594 peptidase M28 YP_004657671.1 4830213 R 761193 CDS YP_004657672.1 338213617 10872741 complement(4831454..4832584) 1 NC_015703.1 PFAM: Mechanosensitive ion channel; COGs: COG1521 transcriptional regulator protein; HAMAP: Type III pantothenate kinase; InterPro IPR004619; KEGG: dfe:Dfer_5203 pantothenate kinase; PFAM: Bordetella pertussis Bvg accessory factor; SPTR: Type III pantothenate kinase 2; TIGRFAM: Bordetella pertussis Bvg accessory factor; mechanosensitive ion channel protein MscS 4832584 10872741 Runsl_4196 Runella slithyformis DSM 19594 mechanosensitive ion channel protein MscS YP_004657672.1 4831454 R 761193 CDS YP_004657673.1 338213618 10872742 4832730..4833476 1 NC_015703.1 PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III; InterPro IPR005017; KEGG: sli:Slin_1298 hypothetical protein; PFAM: Membrane protein, aromatic hydrocarbon degradation; SPTR: uncharacterized protein; Baf family transcriptional acitvator 4833476 10872742 Runsl_4197 Runella slithyformis DSM 19594 Baf family transcriptional acitvator YP_004657673.1 4832730 D 761193 CDS YP_004657674.1 338213619 10872743 4833460..4834737 1 NC_015703.1 PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro IPR010664; KEGG: sli:Slin_1299 hypothetical protein; PFAM: Protein of unknown function DUF1239; SPTR: uncharacterized protein; aromatic hydrocarbon degradation membrane protein 4834737 10872743 Runsl_4198 Runella slithyformis DSM 19594 aromatic hydrocarbon degradation membrane protein YP_004657674.1 4833460 D 761193 CDS YP_004657675.1 338213620 10872744 4834825..4835538 1 NC_015703.1 PFAM: Protein of unknown function (DUF1239); COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR014327:IPR007627:IPR013249; KEGG: dfe:Dfer_0642 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; hypothetical protein 4835538 10872744 Runsl_4199 Runella slithyformis DSM 19594 hypothetical protein YP_004657675.1 4834825 D 761193 CDS YP_004657676.1 338213621 10872745 4835669..4836382 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: dfe:Dfer_0641 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; ECF subfamily RNA polymerase sigma-24 subunit 4836382 10872745 Runsl_4200 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004657676.1 4835669 D 761193 CDS YP_004657677.1 338213622 10872746 4836398..4837399 1 NC_015703.1 PFAM: FecR protein; InterPro IPR012910:IPR000531; KEGG: phe:Phep_2893 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; anti-FecI sigma factor FecR 4837399 10872746 Runsl_4201 Runella slithyformis DSM 19594 anti-FecI sigma factor FecR YP_004657677.1 4836398 D 761193 CDS YP_004657678.1 338213623 10872747 4837420..4840827 1 NC_015703.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: phe:Phep_2892 RagB/SusD domain-containing protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; TonB-dependent receptor plug 4840827 10872747 Runsl_4202 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004657678.1 4837420 D 761193 CDS YP_004657679.1 338213624 10872748 4840851..4842713 1 NC_015703.1 PFAM: SusD family; InterPro IPR010496; KEGG: bth:BT_3469 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; RagB/SusD domain-containing protein 4842713 10872748 Runsl_4203 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004657679.1 4840851 D 761193 CDS YP_004657680.1 338213625 10872749 4842953..4844317 1 NC_015703.1 PFAM: Domain of Unknown Function (DUF1080); InterPro IPR012910; KEGG: sli:Slin_2829 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; hypothetical protein 4844317 10872749 Runsl_4204 Runella slithyformis DSM 19594 hypothetical protein YP_004657680.1 4842953 D 761193 CDS YP_004657681.1 338213626 10872750 complement(4844386..4846830) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; KEGG: rbi:RB2501_03795 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 4846830 10872750 Runsl_4205 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004657681.1 4844386 R 761193 CDS YP_004657682.1 338213627 10872751 complement(4846886..4848073) 1 NC_015703.1 KEGG: rbi:RB2501_03795 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4848073 10872751 Runsl_4206 Runella slithyformis DSM 19594 hypothetical protein YP_004657682.1 4846886 R 761193 CDS YP_004657683.1 338213628 10872752 complement(4848170..4849330) 1 NC_015703.1 KEGG: sli:Slin_5007 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4849330 10872752 Runsl_4207 Runella slithyformis DSM 19594 hypothetical protein YP_004657683.1 4848170 R 761193 CDS YP_004657684.1 338213629 10872753 4849939..4851645 1 NC_015703.1 KEGG: sli:Slin_4998 cytochrome c class I; SPTR: Cytochrome c class I; hypothetical protein 4851645 10872753 Runsl_4208 Runella slithyformis DSM 19594 hypothetical protein YP_004657684.1 4849939 D 761193 CDS YP_004657685.1 338213630 10872754 4851778..4854072 1 NC_015703.1 PFAM: Cytochrome c; KEGG: sli:Slin_5004 hypothetical protein; SPTR: uncharacterized protein; cytochrome c class I 4854072 10872754 Runsl_4209 Runella slithyformis DSM 19594 cytochrome c class I YP_004657685.1 4851778 D 761193 CDS YP_004657686.1 338213631 10872755 4854184..4857204 1 NC_015703.1 PFAM: Cytochrome c; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sli:Slin_5003 sulfatase; PFAM: Sulfatase; PRIAM: Arylsulfatase; SPTR: Sulfatase; hypothetical protein 4857204 10872755 Runsl_4210 Runella slithyformis DSM 19594 hypothetical protein YP_004657686.1 4854184 D 761193 CDS YP_004657687.1 338213632 10872756 4857329..4858936 1 NC_015703.1 PFAM: Sulfatase; InterPro IPR013222:IPR019599:IPR008009:IPR000111; KEGG: phe:Phep_2887 alpha-galactosidase; PFAM: Glycosyl hydrolase 98, carbohydrate-binding module; Alpha-galactosidase, NEW1 domain; Ig; Glycoside hydrolase, clan GH-D; PRIAM: Alpha-galactosidase; SMART: Glycosyl hydrolase 98, carbohydrate-binding module; SPTR: Alpha-galactosidase; arylsulfatase 4858936 10872756 Runsl_4211 Runella slithyformis DSM 19594 arylsulfatase YP_004657687.1 4857329 D 761193 CDS YP_004657688.1 338213633 10872757 4858936..4860996 1 NC_015703.1 PFAM: NPCBM/NEW2 domain; Melibiase; He_PIG associated, NEW1 domain of bacterial glycohydrolase; Ig domain; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR003593:IPR005074:IPR001140:IPR003439; KEGG: shg:Sph21_0591 xenobiotic-transporting ATPase; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Bacteriocin ABC transporter, ATP-binding/permease; alpha-galactosidase 4860996 10872757 Runsl_4212 Runella slithyformis DSM 19594 alpha-galactosidase YP_004657688.1 4858936 D 761193 CDS YP_004657689.1 338213634 10872758 complement(4861234..4863453) 1 NC_015703.1 PFAM: ABC transporter; Peptidase C39 family; ABC transporter transmembrane region; InterPro IPR000866; KEGG: dfe:Dfer_1269 hypothetical protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein; xenobiotic-transporting ATPase 4863453 10872758 Runsl_4213 Runella slithyformis DSM 19594 xenobiotic-transporting ATPase YP_004657689.1 4861234 R 761193 CDS YP_004657690.1 338213635 10872759 complement(4863595..4864116) 1 NC_015703.1 PFAM: AhpC/TSA family; KEGG: shg:Sph21_0589 hypothetical protein; SPTR: uncharacterized protein; alkyl hydroperoxide reductase 4864116 10872759 Runsl_4214 Runella slithyformis DSM 19594 alkyl hydroperoxide reductase YP_004657690.1 4863595 R 761193 CDS YP_004657691.1 338213636 10872760 complement(4864123..4864788) 1 NC_015703.1 hypothetical protein 4864788 10872760 Runsl_4215 Runella slithyformis DSM 19594 hypothetical protein YP_004657691.1 4864123 R 761193 CDS YP_004657692.1 338213637 10872761 complement(4864823..4864987) 1 NC_015703.1 hypothetical protein 4864987 10872761 Runsl_4216 Runella slithyformis DSM 19594 hypothetical protein YP_004657692.1 4864823 R 761193 CDS YP_004657693.1 338213638 10872762 complement(4865053..4865250) 1 NC_015703.1 hypothetical protein 4865250 10872762 Runsl_4217 Runella slithyformis DSM 19594 hypothetical protein YP_004657693.1 4865053 R 761193 CDS YP_004657694.1 338213639 10872763 complement(4865282..4865479) 1 NC_015703.1 hypothetical protein 4865479 10872763 Runsl_4218 Runella slithyformis DSM 19594 hypothetical protein YP_004657694.1 4865282 R 761193 CDS YP_004657695.1 338213640 10872764 4865847..4866098 1 NC_015703.1 KEGG: psn:Pedsa_0209 transcriptional regulator, Crp/Fnr family; SPTR: Cyclic nucleotide binding regulatory protein; hypothetical protein 4866098 10872764 Runsl_4219 Runella slithyformis DSM 19594 hypothetical protein YP_004657695.1 4865847 D 761193 CDS YP_004657696.1 338213641 10872765 4866044..4866466 1 NC_015703.1 SPTR: uncharacterized protein; Crp/Fnr family transcriptional regulator 4866466 10872765 Runsl_4220 Runella slithyformis DSM 19594 Crp/Fnr family transcriptional regulator YP_004657696.1 4866044 D 761193 CDS YP_004657697.1 338213642 10872766 4866639..4866818 1 NC_015703.1 InterPro IPR013148; KEGG: shg:Sph21_5081 glycosyl hydrolase 32 domain protein; PFAM: Glycosyl hydrolases family 32, N-terminal; SPTR: uncharacterized protein; hypothetical protein 4866818 10872766 Runsl_4221 Runella slithyformis DSM 19594 hypothetical protein YP_004657697.1 4866639 D 761193 CDS YP_004657698.1 338213643 10872767 4866996..4867997 1 NC_015703.1 PFAM: Glycosyl hydrolases family 32 N-terminal domain; Glycosyl hydrolases family 43; InterPro IPR013428:IPR003088; KEGG: sli:Slin_5000 dehydrogenase; PFAM: Cytochrome c, class I; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; glycosyl hydrolase 32 domain-containing protein 4867997 10872767 Runsl_4222 Runella slithyformis DSM 19594 glycosyl hydrolase 32 domain-containing protein YP_004657698.1 4866996 D 761193 CDS YP_004657699.1 338213644 10872768 4868017..4870284 1 NC_015703.1 PFAM: Cytochrome c; KEGG: ote:Oter_4283 alpha/beta hydrolase domain-containing protein; PRIAM: Alpha-L-fucosidase; SPTR: Alpha/beta hydrolase fold-3 domain protein; membrane-bound dehydrogenase domain-containing protein 4870284 10872768 Runsl_4223 Runella slithyformis DSM 19594 membrane-bound dehydrogenase domain-containing protein YP_004657699.1 4868017 D 761193 CDS YP_004657700.1 338213645 10872769 4870268..4872757 1 NC_015703.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469:IPR001375; KEGG: pdi:BDI_2246 dipeptidyl aminopeptidase; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; Peptidase S9, prolyl oligopeptidase, catalytic domain; PRIAM: Dipeptidyl-peptidase IV; SPTR: Dipeptidyl aminopeptidase; alpha-L-fucosidase 4872757 10872769 Runsl_4224 Runella slithyformis DSM 19594 alpha-L-fucosidase YP_004657700.1 4870268 D 761193 CDS YP_004657701.1 338213646 10872770 4872810..4875044 1 NC_015703.1 PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region; KEGG: scb:SCAB_0601 hypothetical protein; SPTR: uncharacterized protein; dipeptidyl-peptidase IV 4875044 10872770 Runsl_4225 Runella slithyformis DSM 19594 dipeptidyl-peptidase IV YP_004657701.1 4872810 D 761193 CDS YP_004657702.1 338213647 10872771 4875284..4876663 1 NC_015703.1 hypothetical protein 4876663 10872771 Runsl_4226 Runella slithyformis DSM 19594 hypothetical protein YP_004657702.1 4875284 D 761193 CDS YP_004657703.1 338213648 10872772 complement(4876826..4876981) 1 NC_015703.1 InterPro IPR011462; KEGG: psn:Pedsa_0083 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4876981 10872772 Runsl_4227 Runella slithyformis DSM 19594 hypothetical protein YP_004657703.1 4876826 R 761193 CDS YP_004657704.1 338213649 10872773 complement(4876978..4877532) 1 NC_015703.1 PFAM: Transposase IS200 like; Prodigal; manually curated; hypothetical protein 4877532 10872773 Runsl_4228 Runella slithyformis DSM 19594 hypothetical protein YP_004657704.1 4876978 R 761193 CDS YP_004657705.1 338213650 10872775 complement(4878731..4879591) 1 NC_015703.1 PFAM: Sulfite exporter TauE/SafE; COGs: COG1760 L-serine deaminase; InterPro IPR005131:IPR005130; KEGG: rba:RB8979 L-serine dehydratase, alpha chain; PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain; SPTR: Probable L-serine dehydratase, alpha chain; hypothetical protein 4879591 10872775 Runsl_4230 Runella slithyformis DSM 19594 hypothetical protein YP_004657705.1 4878731 R 761193 CDS YP_004657706.1 338213651 10872776 4879798..4881330 1 NC_015703.1 PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit; L-serine dehydratase, iron-sulfur-dependent, alpha subunit; KEGG: pno:SNOG_14897 hypothetical protein; SPTR: uncharacterized protein; serine dehydratase subunit alpha 4881330 10872776 Runsl_4231 Runella slithyformis DSM 19594 serine dehydratase subunit alpha YP_004657706.1 4879798 D 761193 CDS YP_004657707.1 338213652 10872777 4881392..4882951 1 NC_015703.1 KEGG: sli:Slin_4999 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4882951 10872777 Runsl_4232 Runella slithyformis DSM 19594 hypothetical protein YP_004657707.1 4881392 D 761193 CDS YP_004657708.1 338213653 10872778 4882964..4883800 1 NC_015703.1 PFAM: Alkaline phytoceramidase (aPHC); InterPro IPR002860; KEGG: sli:Slin_1563 glycosyl hydrolase, BNR repeat-containing protein; PFAM: BNR repeat; SPTR: Glycosyl hydrolase, BNR repeat-containing protein; hypothetical protein 4883800 10872778 Runsl_4233 Runella slithyformis DSM 19594 hypothetical protein YP_004657708.1 4882964 D 761193 CDS YP_004657709.1 338213654 10872779 4883905..4887117 1 NC_015703.1 PFAM: BNR/Asp-box repeat; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sli:Slin_4996 sulfatase; PFAM: Sulfatase; SPTR: Sulfatase; glycosyl hydrolase family protein 4887117 10872779 Runsl_4234 Runella slithyformis DSM 19594 glycosyl hydrolase family protein YP_004657709.1 4883905 D 761193 CDS YP_004657710.1 338213655 10872780 4887176..4888714 1 NC_015703.1 PFAM: Sulfatase; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: sli:Slin_4997 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; sulfatase 4888714 10872780 Runsl_4235 Runella slithyformis DSM 19594 sulfatase YP_004657710.1 4887176 D 761193 CDS YP_004657711.1 338213656 10872781 4888761..4890080 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; InterPro IPR003088; KEGG: sli:Slin_1300 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I; oxidoreductase domain-containing protein 4890080 10872781 Runsl_4236 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004657711.1 4888761 D 761193 CDS YP_004657712.1 338213657 10872782 complement(4890127..4890558) 1 NC_015703.1 PFAM: Cytochrome c; COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; InterPro IPR003782; KEGG: dfe:Dfer_5207 electron transport protein SCO1/SenC; PFAM: Copper chaperone SCO1/SenC; SPTR: Electron transport protein SCO1/SenC; cytochrome c class I 4890558 10872782 Runsl_4237 Runella slithyformis DSM 19594 cytochrome c class I YP_004657712.1 4890127 R 761193 CDS YP_004657713.1 338213658 10872783 complement(4890636..4891274) 1 NC_015703.1 PFAM: SCO1/SenC; KEGG: dfe:Dfer_5208 viral A-type inclusion protein; SPTR: Viral A-type inclusion protein; electron transport protein SCO1/SenC 4891274 10872783 Runsl_4238 Runella slithyformis DSM 19594 electron transport protein SCO1/SenC YP_004657713.1 4890636 R 761193 CDS YP_004657714.1 338213659 10872784 complement(4891303..4891734) 1 NC_015703.1 COGs: COG0497 ATPase involved in DNA repair; InterPro IPR004604:IPR003395; KEGG: sli:Slin_1303 DNA repair protein RecN; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; viral A-type inclusion protein 4891734 10872784 Runsl_4239 Runella slithyformis DSM 19594 viral A-type inclusion protein YP_004657714.1 4891303 R 761193 CDS YP_004657715.1 338213660 10872785 complement(4891773..4893464) 1 NC_015703.1 PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN; DNA repair protein RecN 4893464 10872785 Runsl_4240 Runella slithyformis DSM 19594 DNA repair protein RecN YP_004657715.1 4891773 R 761193 CDS YP_004657716.1 338213661 10872786 complement(4893539..4893766) 1 NC_015703.1 KEGG: sli:Slin_1304 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4893766 10872786 Runsl_4241 Runella slithyformis DSM 19594 hypothetical protein YP_004657716.1 4893539 R 761193 CDS YP_004657717.1 338213662 10872787 complement(4893780..4894709) 1 NC_015703.1 COGs: COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; InterPro IPR005252:IPR003382:IPR007085; KEGG: sli:Slin_1305 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: Flavoprotein; DNA/pantothenate metabolism flavoprotein, C-terminal; PRIAM: Phosphopantothenate--cysteine ligase; SPTR: Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; hypothetical protein 4894709 10872787 Runsl_4242 Runella slithyformis DSM 19594 hypothetical protein YP_004657717.1 4893780 R 761193 CDS YP_004657718.1 338213663 10872788 complement(4894743..4895954) 1 NC_015703.1 PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic; KEGG: sli:Slin_1306 hypothetical protein; SPTR: uncharacterized protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 4895954 10872788 Runsl_4243 Runella slithyformis DSM 19594 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_004657718.1 4894743 R 761193 CDS YP_004657719.1 338213664 10872789 complement(4896036..4896344) 1 NC_015703.1 COGs: COG4105 DNA uptake lipoprotein; InterPro IPR017689; KEGG: dfe:Dfer_5214 outer membrane assembly lipoprotein YfiO; SPTR: Outer membrane assembly lipoprotein YfiO; TIGRFAM: Outer membrane assembly lipoprotein YfiO; hypothetical protein 4896344 10872789 Runsl_4244 Runella slithyformis DSM 19594 hypothetical protein YP_004657719.1 4896036 R 761193 CDS YP_004657720.1 338213665 10872790 complement(4896374..4897282) 1 NC_015703.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: sli:Slin_1308 hypothetical protein; SPTR: uncharacterized protein; outer membrane assembly lipoprotein YfiO 4897282 10872790 Runsl_4245 Runella slithyformis DSM 19594 outer membrane assembly lipoprotein YfiO YP_004657720.1 4896374 R 761193 CDS YP_004657721.1 338213666 10872791 complement(4897378..4898004) 1 NC_015703.1 KEGG: sli:Slin_1309 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4898004 10872791 Runsl_4246 Runella slithyformis DSM 19594 hypothetical protein YP_004657721.1 4897378 R 761193 CDS YP_004657722.1 338213667 10872792 complement(4898164..4900125) 1 NC_015703.1 COGs: COG0657 Esterase/lipase; InterPro IPR001375; KEGG: sli:Slin_1531 esterase/lipase-like protein; SPTR: Esterase/lipase-like protein; hypothetical protein 4900125 10872792 Runsl_4247 Runella slithyformis DSM 19594 hypothetical protein YP_004657722.1 4898164 R 761193 CDS YP_004657723.1 338213668 10872793 4900533..4901477 1 NC_015703.1 PFAM: alpha/beta hydrolase fold; COGs: COG2272 Carboxylesterase type B; InterPro IPR002018; KEGG: rbi:RB2501_01206 esterase; PFAM: Carboxylesterase, type B; PRIAM: Carboxylesterase; SPTR: esterase; esterase 4901477 10872793 Runsl_4248 Runella slithyformis DSM 19594 esterase YP_004657723.1 4900533 D 761193 CDS YP_004657724.1 338213669 10872794 4901675..4903198 1 NC_015703.1 PFAM: Carboxylesterase; InterPro IPR006311; KEGG: dfe:Dfer_3262 hypothetical protein; SPTR: uncharacterized protein; carboxylesterase 4903198 10872794 Runsl_4249 Runella slithyformis DSM 19594 carboxylesterase YP_004657724.1 4901675 D 761193 CDS YP_004657725.1 338213670 10872795 4903209..4904510 1 NC_015703.1 TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; KEGG: cph:Cpha266_0450 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4904510 10872795 Runsl_4250 Runella slithyformis DSM 19594 hypothetical protein YP_004657725.1 4903209 D 761193 CDS YP_004657726.1 338213671 10872796 complement(4904601..4905101) 1 NC_015703.1 PFAM: Oxidoreductase molybdopterin binding domain; COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550:IPR000644:IPR005170; KEGG: fps:FP1358 hypothetical protein; PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated region; SPTR: uncharacterized protein; hypothetical protein 4905101 10872796 Runsl_4251 Runella slithyformis DSM 19594 hypothetical protein YP_004657726.1 4904601 R 761193 CDS YP_004657727.1 338213672 10872797 complement(4905098..4906399) 1 NC_015703.1 PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain; hypothetical protein 4906399 10872797 Runsl_4252 Runella slithyformis DSM 19594 hypothetical protein YP_004657727.1 4905098 R 761193 CDS YP_004657728.1 338213673 10872798 4906534..4906851 1 NC_015703.1 KEGG: shg:Sph21_2865 alpha-L-fucosidase; PRIAM: Alpha-L-fucosidase; SPTR: Alpha-L-fucosidase; hypothetical protein 4906851 10872798 Runsl_4253 Runella slithyformis DSM 19594 hypothetical protein YP_004657728.1 4906534 D 761193 CDS YP_004657729.1 338213674 10872799 4907175..4909817 1 NC_015703.1 COGs: COG1501 Alpha-glucosidase 31 of glycosyl hydrolase; InterPro IPR000322; KEGG: phe:Phep_2697 glycoside hydrolase 31; PFAM: Glycoside hydrolase, family 31; PRIAM: Alpha-glucosidase; SPTR: Glycoside hydrolase 31; alpha-L-fucosidase 4909817 10872799 Runsl_4254 Runella slithyformis DSM 19594 alpha-L-fucosidase YP_004657729.1 4907175 D 761193 CDS YP_004657730.1 338213675 10872800 4909814..4911970 1 NC_015703.1 PFAM: Glycosyl hydrolases family 31; KEGG: sli:Slin_4611 hypothetical protein; SPTR: uncharacterized protein; alpha-glucosidase 4911970 10872800 Runsl_4255 Runella slithyformis DSM 19594 alpha-glucosidase YP_004657730.1 4909814 D 761193 CDS YP_004657731.1 338213676 10872801 complement(4912563..4914770) 1 NC_015703.1 PFAM: Domain of unknown function (DUF1083); COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR011659:IPR001375; KEGG: sli:Slin_6131 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein; hypothetical protein 4914770 10872801 Runsl_4256 Runella slithyformis DSM 19594 hypothetical protein YP_004657731.1 4912563 R 761193 CDS YP_004657732.1 338213677 10872802 complement(4915094..4917103) 1 NC_015703.1 PFAM: Prolyl oligopeptidase; WD40-like Beta Propeller Repeat; peptidase S9 prolyl oligopeptidase active site domain-containing protein 4917103 10872802 Runsl_4257 Runella slithyformis DSM 19594 peptidase S9 prolyl oligopeptidase active site domain-containing protein YP_004657732.1 4915094 R 761193 CDS YP_004657733.1 338213678 10872803 4917383..4917562 1 NC_015703.1 COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; InterPro IPR011810:IPR003135:IPR013221:IPR004101; KEGG: llo:LLO_2537 cyanophycin synthetase; PFAM: Mur ligase, central; ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; Mur ligase, C-terminal; PRIAM: Cyanophycin synthase (L-aspartate-adding); SPTR: Cyanophycin synthetase; TIGRFAM: Cyanophycin synthetase; hypothetical protein 4917562 10872803 Runsl_4258 Runella slithyformis DSM 19594 hypothetical protein YP_004657733.1 4917383 D 761193 CDS YP_004657734.1 338213679 10872804 4917606..4920242 1 NC_015703.1 PFAM: RimK-like ATP-grasp domain; Mur ligase, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: cyanophycin synthetase; COGs: COG4242 Cyanophycinase and related exopeptidase; InterPro IPR011811:IPR005320; KEGG: llo:LLO_2536 cyanophycinase; PFAM: Peptidase S51, dipeptidase E; PRIAM: Cyanophycinase; SPTR: cyanophycinase; TIGRFAM: Cyanophycinase; cyanophycin synthetase 4920242 10872804 Runsl_4259 Runella slithyformis DSM 19594 cyanophycin synthetase YP_004657734.1 4917606 D 761193 CDS YP_004657735.1 338213680 10872805 4920285..4921154 1 NC_015703.1 PFAM: Peptidase S51; TIGRFAM: cyanophycinase; COGs: COG1446 Asparaginase; InterPro IPR000246; KEGG: llo:LLO_2535 isoaspartyl dipeptidase with L-asparaginase activity; PFAM: Peptidase T2, asparaginase 2; PRIAM: Beta-aspartyl-peptidase; SPTR: Peptidase T2, asparaginase 2; cyanophycinase 4921154 10872805 Runsl_4260 Runella slithyformis DSM 19594 cyanophycinase YP_004657735.1 4920285 D 761193 CDS YP_004657736.1 338213681 10872806 4921151..4922083 1 NC_015703.1 PFAM: Asparaginase; COGs: COG4930 ATP-dependent Lon-type protease; InterPro IPR013473:IPR014061; KEGG: sku:Sulku_1697 ATP-dependent lon-type protease; SPTR: ATP-dependent Lon-type protease; TIGRFAM: Conserved hypothetical protein CHP02653, peptidase S16 non-peptidase homologue; Conserved hypothetical protein CHP02688; beta-aspartyl-peptidase 4922083 10872806 Runsl_4261 Runella slithyformis DSM 19594 beta-aspartyl-peptidase YP_004657736.1 4921151 D 761193 CDS YP_004657737.1 338213682 10872807 complement(4922398..4924425) 1 NC_015703.1 PFAM: Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: TIGR02688 family protein; conserved hypothetical protein; InterPro IPR014060:IPR013973; KEGG: maq:Maqu_0564 alkaline phosphatase domain-containing protein; PFAM: PglZ domain; SPTR: PglZ domain; TIGRFAM: Conserved hypothetical protein CHP02687; hypothetical protein 4924425 10872807 Runsl_4262 Runella slithyformis DSM 19594 hypothetical protein YP_004657737.1 4922398 R 761193 CDS YP_004657738.1 338213683 10872808 complement(4924435..4926948) 1 NC_015703.1 PFAM: PglZ domain; TIGRFAM: TIGR02687 family protein; COGs: COG2865 transcriptional regulator protein; InterPro IPR007421:IPR000607; KEGG: bvu:BVU_1498 hypothetical protein; PFAM: ATPase associated with various cellular activities, AAA-4; Double-stranded RNA-specific adenosine deaminase (DRADA); SPTR: uncharacterized protein; hypothetical protein 4926948 10872808 Runsl_4263 Runella slithyformis DSM 19594 hypothetical protein YP_004657738.1 4924435 R 761193 CDS YP_004657739.1 338213684 10872809 complement(4926952..4928316) 1 NC_015703.1 PFAM: Divergent AAA domain; COGs: COG3550 conserved hypothetical protein; InterPro IPR012894:IPR012893; KEGG: cpc:Cpar_0148 HipA domain-containing protein; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; SPTR: HipA domain protein; transcriptional regulator 4928316 10872809 Runsl_4264 Runella slithyformis DSM 19594 transcriptional regulator YP_004657739.1 4926952 R 761193 CDS YP_004657740.1 338213685 10872810 complement(4928313..4929260) 1 NC_015703.1 PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain; InterPro IPR017508; KEGG: cpc:Cpar_0147 HipA N-terminal domain-containing protein; SPTR: HipA N-terminal domain protein; TIGRFAM: HipA, N-terminal; HipA domain-containing protein 4929260 10872810 Runsl_4265 Runella slithyformis DSM 19594 HipA domain-containing protein YP_004657740.1 4928313 R 761193 CDS YP_004657741.1 338213686 10872811 complement(4929257..4929592) 1 NC_015703.1 TIGRFAM: HipA N-terminal domain; InterPro IPR017507:IPR001387; KEGG: bvu:BVU_1930 transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: transcriptional regulator; TIGRFAM: Transcriptional regulator, HipB-like; HipA N-terminal domain-containing protein 4929592 10872811 Runsl_4266 Runella slithyformis DSM 19594 HipA N-terminal domain-containing protein YP_004657741.1 4929257 R 761193 CDS YP_004657742.1 338213687 10872812 complement(4929579..4929800) 1 NC_015703.1 PFAM: Helix-turn-helix; TIGRFAM: transcriptional regulator, y4mF family; COGs: COG1002 Type II restriction enzyme methylase subunits; KEGG: cpb:Cphamn1_1677 hypothetical protein; SPTR: uncharacterized protein; transcriptional regulator 4929800 10872812 Runsl_4267 Runella slithyformis DSM 19594 transcriptional regulator YP_004657742.1 4929579 R 761193 CDS YP_004657743.1 338213688 10872813 complement(4929912..4933271) 1 NC_015703.1 PFAM: Eco57I restriction endonuclease; KEGG: cyh:Cyan8802_2210 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4933271 10872813 Runsl_4268 Runella slithyformis DSM 19594 hypothetical protein YP_004657743.1 4929912 R 761193 CDS YP_004657744.1 338213689 10872814 complement(4933430..4936951) 1 NC_015703.1 InterPro IPR014858; KEGG: sku:Sulku_1687 hypothetical protein; PFAM: Protein of unknown function DUF1788; SPTR: uncharacterized protein; hypothetical protein 4936951 10872814 Runsl_4269 Runella slithyformis DSM 19594 hypothetical protein YP_004657744.1 4933430 R 761193 CDS YP_004657745.1 338213690 10872815 complement(4936956..4937549) 1 NC_015703.1 PFAM: Domain of unknown function (DUF1788); InterPro IPR014948; KEGG: sku:Sulku_1686 hypothetical protein; PFAM: Protein of unknown function DUF1819, inner membrane; SPTR: uncharacterized protein; hypothetical protein 4937549 10872815 Runsl_4270 Runella slithyformis DSM 19594 hypothetical protein YP_004657745.1 4936956 R 761193 CDS YP_004657746.1 338213691 10872816 complement(4937552..4938169) 1 NC_015703.1 PFAM: inner membrane protein (DUF1819); SPTR: Transposase IS4 family protein; hypothetical protein 4938169 10872816 Runsl_4271 Runella slithyformis DSM 19594 hypothetical protein YP_004657746.1 4937552 R 761193 CDS YP_004657747.1 338213692 10872817 complement(4938766..4940112) 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 4940112 10872817 Runsl_4272 Runella slithyformis DSM 19594 hypothetical protein YP_004657747.1 4938766 R 761193 CDS YP_004657748.1 338213693 10872820 complement(4943816..4945027) 1 NC_015703.1 PFAM: Transposase, Mutator family; COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; KEGG: rrs:RoseRS_0056 AAA ATPase; SPTR: Superfamily I DNA/RNA helicase; transposase mutator type 4945027 10872820 Runsl_4275 Runella slithyformis DSM 19594 transposase mutator type YP_004657748.1 4943816 R 761193 CDS YP_004657749.1 338213694 10872821 complement(4945137..4946852) 1 NC_015703.1 PFAM: Type III restriction enzyme, res subunit; KEGG: dae:Dtox_1537 transcriptional regulator; SPTR: uncharacterized protein; hypothetical protein 4946852 10872821 Runsl_4276 Runella slithyformis DSM 19594 hypothetical protein YP_004657749.1 4945137 R 761193 CDS YP_004657750.1 338213695 10872822 complement(4946839..4951584) 1 NC_015703.1 COGs: COG1483 ATPase (AAA+ superfamily); InterPro IPR007555; KEGG: dau:Daud_0361 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4951584 10872822 Runsl_4277 Runella slithyformis DSM 19594 hypothetical protein YP_004657750.1 4946839 R 761193 CDS YP_004657751.1 338213696 10872823 complement(4951748..4955032) 1 NC_015703.1 PFAM: Protein of unknown function (DUF499); Prodigal; This gene is disrupted by insertion of repetitive element; manually curated; hypothetical protein 4955032 10872823 Runsl_4278 Runella slithyformis DSM 19594 hypothetical protein YP_004657751.1 4951748 R 761193 CDS YP_004657752.1 338213697 10872825 4955636..4956982 1 NC_015703.1 KEGG: lba:Lebu_1515 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 4956982 10872825 Runsl_4280 Runella slithyformis DSM 19594 hypothetical protein YP_004657752.1 4955636 D 761193 CDS YP_004657753.1 338213698 10872826 complement(4959657..4960685) 1 NC_015703.1 COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001:IPR001650:IPR006935; KEGG: cki:Calkr_0708 helicase domain-containing protein; PFAM: DNA/RNA helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal; SPTR: Helicase domain-containing protein; hypothetical protein 4960685 10872826 Runsl_4281 Runella slithyformis DSM 19594 hypothetical protein YP_004657753.1 4959657 R 761193 CDS YP_004657754.1 338213699 10872827 complement(4960682..4964128) 1 NC_015703.1 PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain; helicase 4964128 10872827 Runsl_4282 Runella slithyformis DSM 19594 helicase YP_004657754.1 4960682 R 761193 CDS YP_004657755.1 338213700 10872828 complement(4965196..4965438) 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 4965438 10872828 Runsl_4283 Runella slithyformis DSM 19594 hypothetical protein YP_004657755.1 4965196 R 761193 CDS YP_004657756.1 338213701 10872830 complement(4966380..4966634) 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 4966634 10872830 Runsl_4285 Runella slithyformis DSM 19594 hypothetical protein YP_004657756.1 4966380 R 761193 CDS YP_004657757.1 338213702 10872832 complement(4968265..4969725) 1 NC_015703.1 PFAM: Divergent AAA domain; InterPro IPR002145; PFAM: CopG-like DNA-binding; transcriptional regulator 4969725 10872832 Runsl_4287 Runella slithyformis DSM 19594 transcriptional regulator YP_004657757.1 4968265 R 761193 CDS YP_004657758.1 338213703 10872833 complement(4970015..4970632) 1 NC_015703.1 PFAM: Ribbon-helix-helix protein, copG family; KEGG: shg:Sph21_3498 VirE protein; SPTR: uncharacterized protein; CopG family transcriptional regulator 4970632 10872833 Runsl_4288 Runella slithyformis DSM 19594 CopG family transcriptional regulator YP_004657758.1 4970015 R 761193 CDS YP_004657759.1 338213704 10872834 complement(4971114..4973747) 1 NC_015703.1 hypothetical protein 4973747 10872834 Runsl_4289 Runella slithyformis DSM 19594 hypothetical protein YP_004657759.1 4971114 R 761193 CDS YP_004657760.1 338213705 10872835 complement(4973878..4974171) 1 NC_015703.1 hypothetical protein 4974171 10872835 Runsl_4290 Runella slithyformis DSM 19594 hypothetical protein YP_004657760.1 4973878 R 761193 CDS YP_004657761.1 338213706 10872836 complement(4974291..4975100) 1 NC_015703.1 InterPro IPR002104; KEGG: pdi:BDI_0498 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Integrase; manually curated; hypothetical protein 4975100 10872836 Runsl_4291 Runella slithyformis DSM 19594 hypothetical protein YP_004657761.1 4974291 R 761193 CDS YP_004657762.1 338213707 10872837 complement(4975069..4976310) 1 NC_015703.1 PFAM: Phage integrase; integrase 4976310 10872837 Runsl_4292 Runella slithyformis DSM 19594 integrase YP_004657762.1 4975069 R 761193 CDS YP_004657763.1 338213708 10872839 4976857..4977957 1 NC_015703.1 PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family; COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: sli:Slin_3124 hypothetical protein; PFAM: Protein of unknown function DUF164; SPTR: uncharacterized protein; NGG1p interacting factor 3 protein, NIF3 4977957 10872839 Runsl_4293 Runella slithyformis DSM 19594 NGG1p interacting factor 3 protein, NIF3 YP_004657763.1 4976857 D 761193 CDS YP_004657764.1 338213709 10872840 4978000..4978731 1 NC_015703.1 PFAM: zinc ribbon domain; COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: sli:Slin_1640 sodium solute transporter; PFAM: Sodium/solute symporter; SPTR: SSS sodium solute transporter superfamily; hypothetical protein 4978731 10872840 Runsl_4294 Runella slithyformis DSM 19594 hypothetical protein YP_004657764.1 4978000 D 761193 CDS YP_004657765.1 338213710 10872841 complement(4978850..4980547) 1 NC_015703.1 PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; Na+/solute symporter 4980547 10872841 Runsl_4295 Runella slithyformis DSM 19594 Na+/solute symporter YP_004657765.1 4978850 R 761193 CDS YP_004657766.1 338213711 10872842 complement(4980641..4980805) 1 NC_015703.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: prw:PsycPRwf_1005 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: 3-oxoacyl-acyl-carrier-protein reductase; hypothetical protein 4980805 10872842 Runsl_4296 Runella slithyformis DSM 19594 hypothetical protein YP_004657766.1 4980641 R 761193 CDS YP_004657767.1 338213712 10872843 4981023..4981778 1 NC_015703.1 PFAM: short chain dehydrogenase; KEGG: lbf:LBF_3189 hypothetical protein; SPTR: uncharacterized protein; 3-oxoacyl-ACP reductase 4981778 10872843 Runsl_4297 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004657767.1 4981023 D 761193 CDS YP_004657768.1 338213713 10872844 4981886..4982362 1 NC_015703.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_1313 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Carbonyl reductase (NADPH); SPTR: Short-chain dehydrogenase/reductase SDR; hypothetical protein 4982362 10872844 Runsl_4298 Runella slithyformis DSM 19594 hypothetical protein YP_004657768.1 4981886 D 761193 CDS YP_004657769.1 338213714 10872845 4982409..4983185 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG0262 Dihydrofolate reductase; InterPro IPR001796; KEGG: dfe:Dfer_4255 dihydrofolate reductase; PFAM: Dihydrofolate reductase region; SPTR: Dihydrofolate reductase; carbonyl reductase 4983185 10872845 Runsl_4299 Runella slithyformis DSM 19594 carbonyl reductase YP_004657769.1 4982409 D 761193 CDS YP_004657770.1 338213715 10872846 complement(4983233..4983724) 1 NC_015703.1 PFAM: Dihydrofolate reductase; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_1311 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein; dihydrofolate reductase subunit 4983724 10872846 Runsl_4300 Runella slithyformis DSM 19594 dihydrofolate reductase subunit YP_004657770.1 4983233 R 761193 CDS YP_004657771.1 338213716 10872847 complement(4984039..4986369) 1 NC_015703.1 PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; HAMAP: tRNA(Ile)-lysidine synthase; InterPro IPR012795:IPR012796:IPR011063; KEGG: chu:CHU_3018 tRNA(Ile)-lysidine synthetase; PFAM: PP-loop; SPTR: tRNA(Ile)-lysidine synthase; TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; Lysidine-tRNA(Ile) synthetase, C-terminal; OmpA/MotB domain-containing protein 4986369 10872847 Runsl_4301 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004657771.1 4984039 R 761193 CDS YP_004657772.1 338213717 10872848 complement(4986515..4987834) 1 NC_015703.1 PFAM: TilS substrate C-terminal domain; PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, C-terminal domain; tRNA(Ile)-lysidine synthetase, N-terminal domain; InterPro IPR006311:IPR012307; KEGG: dfe:Dfer_0589 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; tRNA(Ile)-lysidine synthase 4987834 10872848 Runsl_4302 Runella slithyformis DSM 19594 tRNA(Ile)-lysidine synthase YP_004657772.1 4986515 R 761193 CDS YP_004657773.1 338213718 10872849 complement(4987931..4988926) 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR003088:IPR005084; KEGG: dfe:Dfer_2188 cytochrome c class I; PFAM: Cytochrome c, class I; PKD; Carbohydrate binding domain, family 6; SMART: PKD; SPTR: Cytochrome c class I; xylose isomerase domain-containing protein 4988926 10872849 Runsl_4303 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004657773.1 4987931 R 761193 CDS YP_004657774.1 338213719 10872850 complement(4988992..4992738) 1 NC_015703.1 PFAM: Cytochrome c; Trehalose utilisation; Carbohydrate binding module (family 6); PKD domain; Domain of unknown function (DUF3471); COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: dfe:Dfer_2189 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; cytochrome c class I 4992738 10872850 Runsl_4304 Runella slithyformis DSM 19594 cytochrome c class I YP_004657774.1 4988992 R 761193 CDS YP_004657775.1 338213720 10872851 4992791..4993621 1 NC_015703.1 PFAM: NUDIX domain; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593:IPR001140:IPR003439; KEGG: phe:Phep_0117 ABC transporter-like protein; PFAM: ABC transporter-like; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; NUDIX hydrolase 4993621 10872851 Runsl_4305 Runella slithyformis DSM 19594 NUDIX hydrolase YP_004657775.1 4992791 D 761193 CDS YP_004657776.1 338213721 10872852 4993789..4995546 1 NC_015703.1 PFAM: ABC transporter; ABC transporter transmembrane region; xenobiotic-transporting ATPase 4995546 10872852 Runsl_4306 Runella slithyformis DSM 19594 xenobiotic-transporting ATPase YP_004657776.1 4993789 D 761193 CDS YP_004657777.1 338213722 10872853 complement(4995550..4995999) 1 NC_015703.1 hypothetical protein 4995999 10872853 Runsl_4307 Runella slithyformis DSM 19594 hypothetical protein YP_004657777.1 4995550 R 761193 CDS YP_004657778.1 338213723 10872854 complement(4996271..4996726) 1 NC_015703.1 COGs: COG0520 Selenocysteine lyase; InterPro IPR006311:IPR000192; KEGG: sli:Slin_1756 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Isopenicillin-N epimerase; SPTR: Aminotransferase class V; hypothetical protein 4996726 10872854 Runsl_4308 Runella slithyformis DSM 19594 hypothetical protein YP_004657778.1 4996271 R 761193 CDS YP_004657779.1 338213724 10872855 4996930..4998234 1 NC_015703.1 PFAM: Aminotransferase class-V; isopenicillin-N epimerase 4998234 10872855 Runsl_4309 Runella slithyformis DSM 19594 isopenicillin-N epimerase YP_004657779.1 4996930 D 761193 CDS YP_004657780.1 338213725 10872856 complement(4998381..4998506) 1 NC_015703.1 COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: rlg:Rleg_0575 LemA family protein; PFAM: LemA; SPTR: LemA family protein; hypothetical protein 4998506 10872856 Runsl_4310 Runella slithyformis DSM 19594 hypothetical protein YP_004657780.1 4998381 R 761193 CDS YP_004657781.1 338213726 10872857 4998817..4999344 1 NC_015703.1 PFAM: LemA family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: ran:Riean_1895 RNA polymerase, sigma-24 subunit, ecf subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; LemA family protein 4999344 10872857 Runsl_4311 Runella slithyformis DSM 19594 LemA family protein YP_004657781.1 4998817 D 761193 CDS YP_004657782.1 338213727 10872858 4999463..4999948 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: sli:Slin_6311 hypothetical protein; SPTR: uncharacterized protein; ECF subfamily RNA polymerase sigma-24 subunit 4999948 10872858 Runsl_4312 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004657782.1 4999463 D 761193 CDS YP_004657783.1 338213728 10872859 4999952..5000584 1 NC_015703.1 hypothetical protein 5000584 10872859 Runsl_4313 Runella slithyformis DSM 19594 hypothetical protein YP_004657783.1 4999952 D 761193 CDS YP_004657784.1 338213729 10872860 5000634..5001134 1 NC_015703.1 COGs: COG3735 conserved hypothetical protein; InterPro IPR010891; KEGG: sli:Slin_6313 GumN family protein; PFAM: GumN; SPTR: GumN family protein; hypothetical protein 5001134 10872860 Runsl_4314 Runella slithyformis DSM 19594 hypothetical protein YP_004657784.1 5000634 D 761193 CDS YP_004657785.1 338213730 10872861 5001156..5002004 1 NC_015703.1 PFAM: GumN protein; COGs: COG2103 sugar phosphate isomerase; HAMAP: N-acetylmuramic acid 6-phosphate etherase; InterPro IPR005488; KEGG: dfe:Dfer_3685 N-acetylmuramic acid-6-phosphate etherase; SPTR: Glucokinase regulatory-like protein; TIGRFAM: Glucokinase regulatory-like protein; GumN family protein 5002004 10872861 Runsl_4315 Runella slithyformis DSM 19594 GumN family protein YP_004657785.1 5001156 D 761193 CDS YP_004657786.1 338213731 10872862 complement(5002257..5003075) 1 NC_015703.1 PFAM: SIS domain; TIGRFAM: N-acetylmuramic acid 6-phosphate etherase; COGs: COG0688 Phosphatidylserine decarboxylase; HAMAP: Phosphatidylserine decarboxylase proenzyme; InterPro IPR004428:IPR003817; KEGG: dfe:Dfer_3556 phosphatidylserine decarboxylase; PFAM: Phosphatidylserine decarboxylase-related; PRIAM: Phosphatidylserine decarboxylase; SPTR: Phosphatidylserine decarboxylase proenzyme; TIGRFAM: Phosphatidylserine decarboxylase-related protein; N-acetylmuramic acid 6-phosphate etherase 5003075 10872862 Runsl_4316 Runella slithyformis DSM 19594 N-acetylmuramic acid 6-phosphate etherase YP_004657786.1 5002257 R 761193 CDS YP_004657787.1 338213732 10872863 complement(5003119..5003778) 1 NC_015703.1 PFAM: Phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase precursor-related protein; COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006097:IPR006096; KEGG: sli:Slin_5648 Glu/Leu/Phe/Val dehydrogenase; PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation region; PRIAM: Glutamate dehydrogenase (NAD(P)(+)); SPTR: Glu/Leu/Phe/Val dehydrogenase; phosphatidylserine decarboxylase proenzyme 5003778 10872863 Runsl_4317 Runella slithyformis DSM 19594 phosphatidylserine decarboxylase proenzyme YP_004657787.1 5003119 R 761193 CDS YP_004657788.1 338213733 10872864 complement(5003885..5005162) 1 NC_015703.1 PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; KEGG: sli:Slin_5647 TraR/DksA family transcriptional regulator; SPTR: Transcriptional regulator, TraR/DksA family; glutamate dehydrogenase (NAD(P)(+)) 5005162 10872864 Runsl_4318 Runella slithyformis DSM 19594 glutamate dehydrogenase (NAD(P)(+)) YP_004657788.1 5003885 R 761193 CDS YP_004657789.1 338213734 10872865 5005545..5005928 1 NC_015703.1 PFAM: Prokaryotic dksA/traR C4-type zinc finger; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_2659 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 2,4-dienoyl-CoA reductase (NADPH); SPTR: Short-chain dehydrogenase/reductase SDR; TraR/DksA family transcriptional regulator 5005928 10872865 Runsl_4319 Runella slithyformis DSM 19594 TraR/DksA family transcriptional regulator YP_004657789.1 5005545 D 761193 CDS YP_004657790.1 338213735 10872866 complement(5006030..5006929) 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: mtt:Ftrac_2341 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR: Enoyl-CoA hydratase/isomerase; 2,4-dienoyl-CoA reductase 5006929 10872866 Runsl_4320 Runella slithyformis DSM 19594 2,4-dienoyl-CoA reductase YP_004657790.1 5006030 R 761193 CDS YP_004657791.1 338213736 10872867 complement(5007079..5007885) 1 NC_015703.1 PFAM: Enoyl-CoA hydratase/isomerase; COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277; KEGG: rca:Rcas_3473 cystathionine gamma-synthase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; PRIAM: Cystathionine gamma-lyase; SPTR: Cystathionine gamma-synthase; enoyl-CoA hydratase 5007885 10872867 Runsl_4321 Runella slithyformis DSM 19594 enoyl-CoA hydratase YP_004657791.1 5007079 R 761193 CDS YP_004657792.1 338213737 10872868 5008184..5009302 1 NC_015703.1 PFAM: Cys/Met metabolism PLP-dependent enzyme; cystathionine gamma-lyase 5009302 10872868 Runsl_4322 Runella slithyformis DSM 19594 cystathionine gamma-lyase YP_004657792.1 5008184 D 761193 CDS YP_004657793.1 338213738 10872870 complement(5009606..5010487) 1 NC_015703.1 PFAM: CHC2 zinc finger; DNA primase 5010487 10872870 Runsl_4323 Runella slithyformis DSM 19594 DNA primase YP_004657793.1 5009606 R 761193 CDS YP_004657794.1 338213739 10872871 5010521..5010649 1 NC_015703.1 KEGG: sli:Slin_0693 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5010649 10872871 Runsl_4324 Runella slithyformis DSM 19594 hypothetical protein YP_004657794.1 5010521 D 761193 CDS YP_004657795.1 338213740 10872872 complement(5010859..5012046) 1 NC_015703.1 hypothetical protein 5012046 10872872 Runsl_4325 Runella slithyformis DSM 19594 hypothetical protein YP_004657795.1 5010859 R 761193 CDS YP_004657796.1 338213741 10872873 complement(5012151..5012345) 1 NC_015703.1 KEGG: zpr:ZPR_2780 transposase; SPTR: Phage integrase; hypothetical protein 5012345 10872873 Runsl_4326 Runella slithyformis DSM 19594 hypothetical protein YP_004657796.1 5012151 R 761193 CDS YP_004657797.1 338213742 10872874 complement(5012356..5013618) 1 NC_015703.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: mtt:Ftrac_1206 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Phage integrase; hypothetical protein 5013618 10872874 Runsl_4327 Runella slithyformis DSM 19594 hypothetical protein YP_004657797.1 5012356 R 761193 CDS YP_004657798.1 338213743 10872875 complement(5013615..5014883) 1 NC_015703.1 PFAM: Phage integrase; integrase 5014883 10872875 Runsl_4328 Runella slithyformis DSM 19594 integrase YP_004657798.1 5013615 R 761193 CDS YP_004657799.1 338213744 10872876 complement(5014975..5015241) 1 NC_015703.1 InterPro IPR001387; KEGG: nla:NLA_19700 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix domain protein; hypothetical protein 5015241 10872876 Runsl_4329 Runella slithyformis DSM 19594 hypothetical protein YP_004657799.1 5014975 R 761193 CDS YP_004657800.1 338213745 10872877 5015338..5015847 1 NC_015703.1 PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein 5015847 10872877 Runsl_4330 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004657800.1 5015338 D 761193 CDS YP_004657801.1 338213746 10872878 complement(5017173..5017547) 1 NC_015703.1 hypothetical protein 5017547 10872878 Runsl_4331 Runella slithyformis DSM 19594 hypothetical protein YP_004657801.1 5017173 R 761193 CDS YP_004657802.1 338213747 10872879 complement(5017629..5018204) 1 NC_015703.1 hypothetical protein 5018204 10872879 Runsl_4332 Runella slithyformis DSM 19594 hypothetical protein YP_004657802.1 5017629 R 761193 CDS YP_004657803.1 338213748 10872880 complement(5018415..5018582) 1 NC_015703.1 KEGG: dfe:Dfer_0539 integrase; SPTR: Integrase; hypothetical protein 5018582 10872880 Runsl_4333 Runella slithyformis DSM 19594 hypothetical protein YP_004657803.1 5018415 R 761193 CDS YP_004657804.1 338213749 10872881 5018958..5019749 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 5019749 10872881 Runsl_4334 Runella slithyformis DSM 19594 hypothetical protein YP_004657804.1 5018958 D 761193 CDS YP_004657805.1 338213750 10872884 5021802..5022008 1 NC_015703.1 manually curated; hypothetical protein 5022008 10872884 Runsl_4337 Runella slithyformis DSM 19594 hypothetical protein YP_004657805.1 5021802 D 761193 CDS YP_004657806.1 338213751 10872887 5023395..5024102 1 NC_015703.1 KEGG: fsu:Fisuc_1557 hypothetical protein; SPTR: CRISPR-associated protein, TM1811 family; hypothetical protein 5024102 10872887 Runsl_4340 Runella slithyformis DSM 19594 hypothetical protein YP_004657806.1 5023395 D 761193 CDS YP_004657807.1 338213752 10872888 5024113..5025708 1 NC_015703.1 InterPro IPR005537; KEGG: vvy:VVA1540 hypothetical protein; PFAM: Protein of unknown function DUF324; SPTR: CRISPR-associated RAMP protein; hypothetical protein 5025708 10872888 Runsl_4341 Runella slithyformis DSM 19594 hypothetical protein YP_004657807.1 5024113 D 761193 CDS YP_004657808.1 338213753 10872889 5025712..5026290 1 NC_015703.1 PFAM: RAMP superfamily; Prodigal; manually curated; hypothetical protein 5026290 10872889 Runsl_4342 Runella slithyformis DSM 19594 hypothetical protein YP_004657808.1 5025712 D 761193 CDS YP_004657809.1 338213754 10872891 complement(join(5027479..5027901,5027903..5028490)) 1 NC_015703.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; Prodigal; manually curated; transposase 5028490 10872891 Runsl_4344 Runella slithyformis DSM 19594 transposase YP_004657809.1 5027479 R 761193 CDS YP_004657810.1 338213755 10872893 5029137..5030201 1 NC_015703.1 PFAM: CRISPR-associated protein (cas_TM1812); TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated DxTHG motif protein; InterPro IPR002559; KEGG: app:CAP2UW1_1881 transposase IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase IS4 family protein; CRISPR-associated protein 5030201 10872893 Runsl_4346 Runella slithyformis DSM 19594 CRISPR-associated protein YP_004657810.1 5029137 D 761193 CDS YP_004657811.1 338213756 10872894 complement(5030182..5031198) 1 NC_015703.1 PFAM: Transposase DDE domain; transposase IS4 family protein 5031198 10872894 Runsl_4347 Runella slithyformis DSM 19594 transposase IS4 family protein YP_004657811.1 5030182 R 761193 CDS YP_004657812.1 338213757 10872895 complement(5031348..5031551) 1 NC_015703.1 hypothetical protein 5031551 10872895 Runsl_4348 Runella slithyformis DSM 19594 hypothetical protein YP_004657812.1 5031348 R 761193 CDS YP_004657813.1 338213758 10872896 complement(5031699..5031953) 1 NC_015703.1 InterPro IPR000601; KEGG: cpi:Cpin_6914 PKD domain containing protein; PFAM: PKD; SPTR: PKD domain containing protein; hypothetical protein 5031953 10872896 Runsl_4349 Runella slithyformis DSM 19594 hypothetical protein YP_004657813.1 5031699 R 761193 CDS YP_004657814.1 338213759 10872897 complement(5031916..5033052) 1 NC_015703.1 PFAM: PKD domain; manually curated; PKD domain-containing protein 5033052 10872897 Runsl_4350 Runella slithyformis DSM 19594 PKD domain-containing protein YP_004657814.1 5031916 R 761193 CDS YP_004657815.1 338213760 10872899 complement(5033816..5035054) 1 NC_015703.1 PFAM: Uncharacterised protein family (UPF0236); InterPro IPR005151; KEGG: ppn:Palpr_0648 peptidase S41; PFAM: Peptidase S41; SPTR: uncharacterized protein; hypothetical protein 5035054 10872899 Runsl_4352 Runella slithyformis DSM 19594 hypothetical protein YP_004657815.1 5033816 R 761193 CDS YP_004657816.1 338213761 10872900 complement(5035408..5036757) 1 NC_015703.1 PFAM: Peptidase S41; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR001375; KEGG: sli:Slin_0636 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S41 5036757 10872900 Runsl_4353 Runella slithyformis DSM 19594 peptidase S41 YP_004657816.1 5035408 R 761193 CDS YP_004657817.1 338213762 10872901 complement(5037143..5039629) 1 NC_015703.1 PFAM: Prolyl oligopeptidase; KEGG: sur:STAUR_3803 hypothetical protein; SPTR: Conserved uncharacterized protein; peptidase S9 prolyl oligopeptidase active site domain-containing protein 5039629 10872901 Runsl_4354 Runella slithyformis DSM 19594 peptidase S9 prolyl oligopeptidase active site domain-containing protein YP_004657817.1 5037143 R 761193 CDS YP_004657818.1 338213763 10872902 complement(5039671..5040114) 1 NC_015703.1 PFAM: Protein of unknown function (DUF2721); InterPro IPR000086; KEGG: dfe:Dfer_1953 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; hypothetical protein 5040114 10872902 Runsl_4355 Runella slithyformis DSM 19594 hypothetical protein YP_004657818.1 5039671 R 761193 CDS YP_004657819.1 338213764 10872903 5040228..5040899 1 NC_015703.1 PFAM: NUDIX domain; KEGG: dfe:Dfer_4518 hypothetical protein; SPTR: uncharacterized protein; NUDIX hydrolase 5040899 10872903 Runsl_4356 Runella slithyformis DSM 19594 NUDIX hydrolase YP_004657819.1 5040228 D 761193 CDS YP_004657820.1 338213765 10872904 5040991..5041515 1 NC_015703.1 PFAM: HTH domain; COGs: COG2195 Di- and tripeptidase; InterPro IPR002933:IPR011650:IPR010161; KEGG: sli:Slin_2425 peptidase T; PFAM: Peptidase M20, dimerisation; Peptidase M20; PRIAM: Tripeptide aminopeptidase; SPTR: Peptidase T; TIGRFAM: Peptidase M20B, tripeptide aminopeptidase; hypothetical protein 5041515 10872904 Runsl_4357 Runella slithyformis DSM 19594 hypothetical protein YP_004657820.1 5040991 D 761193 CDS YP_004657821.1 338213766 10872905 5041662..5042909 1 NC_015703.1 PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: peptidase T; InterPro IPR012910; KEGG: sli:Slin_3208 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; peptidase T 5042909 10872905 Runsl_4358 Runella slithyformis DSM 19594 peptidase T YP_004657821.1 5041662 D 761193 CDS YP_004657822.1 338213767 10872906 5043088..5045550 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; MG2 domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; KEGG: fbc:FB2170_06930 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 5045550 10872906 Runsl_4359 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004657822.1 5043088 D 761193 CDS YP_004657823.1 338213768 10872907 complement(5045566..5046531) 1 NC_015703.1 PFAM: Phytanoyl-CoA dioxygenase (PhyH); COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: fbc:FB2170_06925 transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator; hypothetical protein 5046531 10872907 Runsl_4360 Runella slithyformis DSM 19594 hypothetical protein YP_004657823.1 5045566 R 761193 CDS YP_004657824.1 338213769 10872908 5046693..5047613 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR011579; KEGG: fba:FIC_01835 ATPase; SPTR: ATPase; AraC family transcriptional regulator 5047613 10872908 Runsl_4361 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004657824.1 5046693 D 761193 CDS YP_004657825.1 338213770 10872909 5047738..5049162 1 NC_015703.1 PFAM: Archaeal ATPase; manually curated; ATPase 5049162 10872909 Runsl_4362 Runella slithyformis DSM 19594 ATPase YP_004657825.1 5047738 D 761193 CDS YP_004657826.1 338213771 10872911 complement(5049296..5050189) 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 5050189 10872911 Runsl_4364 Runella slithyformis DSM 19594 hypothetical protein YP_004657826.1 5049296 R 761193 CDS YP_004657827.1 338213772 10872913 5051348..5052364 1 NC_015703.1 PFAM: Transposase DDE domain; COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR001264:IPR001460; KEGG: dfe:Dfer_4764 glycosyl transferase 51; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Glycosyl transferase 51; transposase IS4 family protein 5052364 10872913 Runsl_4366 Runella slithyformis DSM 19594 transposase IS4 family protein YP_004657827.1 5051348 D 761193 CDS YP_004657828.1 338213773 10872914 complement(5052503..5055103) 1 NC_015703.1 PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931:IPR013589; KEGG: dfe:Dfer_3510 transglutaminase domain protein; PFAM: Transglutaminase-like; Bacterial transglutaminase-like, N-terminal; SMART: Transglutaminase-like; SPTR: Transglutaminase domain protein; peptidoglycan glycosyltransferase 5055103 10872914 Runsl_4367 Runella slithyformis DSM 19594 peptidoglycan glycosyltransferase YP_004657828.1 5052503 R 761193 CDS YP_004657829.1 338213774 10872915 complement(5055322..5056200) 1 NC_015703.1 PFAM: Transglutaminase-like superfamily; Bacterial transglutaminase-like N-terminal region; COGs: COG2308 conserved hypothetical protein; InterPro IPR007297:IPR007302:IPR007296; KEGG: dfe:Dfer_3511 protein of unknown function DUF404; PFAM: Protein of unknown function DUF404, bacteria N-terminal; Protein of unknown function DUF407; Protein of unknown function DUF403, bacteria; SPTR: uncharacterized protein; transglutaminase domain-containing protein 5056200 10872915 Runsl_4368 Runella slithyformis DSM 19594 transglutaminase domain-containing protein YP_004657829.1 5055322 R 761193 CDS YP_004657830.1 338213775 10872916 complement(5056190..5058757) 1 NC_015703.1 PFAM: Bacterial domain of unknown function (DUF403); Domain of unknown function (DUF407); Domain of unknown function (DUF404); COGs: COG4196 conserved hypothetical protein; InterPro IPR002931:IPR013589:IPR018667; KEGG: dfe:Dfer_3512 transglutaminase domain protein; PFAM: Protein of unknown function DUF2126; Bacterial transglutaminase-like, N-terminal; Transglutaminase-like; SMART: Transglutaminase-like; SPTR: Transglutaminase domain protein; hypothetical protein 5058757 10872916 Runsl_4369 Runella slithyformis DSM 19594 hypothetical protein YP_004657830.1 5056190 R 761193 CDS YP_004657831.1 338213776 10872917 complement(5058807..5062232) 1 NC_015703.1 PFAM: Transglutaminase-like superfamily; Bacterial transglutaminase-like N-terminal region; amidoligase enzyme (DUF2126); KEGG: dfe:Dfer_1486 glycoside hydrolase 30; SPTR: xylanase; hypothetical protein 5062232 10872917 Runsl_4370 Runella slithyformis DSM 19594 hypothetical protein YP_004657831.1 5058807 R 761193 CDS YP_004657832.1 338213777 10872918 5062794..5064308 1 NC_015703.1 glycoside hydrolase 5064308 10872918 Runsl_4371 Runella slithyformis DSM 19594 glycoside hydrolase YP_004657832.1 5062794 D 761193 CDS YP_004657833.1 338213778 10872919 5064506..5065243 1 NC_015703.1 hypothetical protein 5065243 10872919 Runsl_4372 Runella slithyformis DSM 19594 hypothetical protein YP_004657833.1 5064506 D 761193 CDS YP_004657834.1 338213779 10872920 5065293..5066066 1 NC_015703.1 KEGG: dfe:Dfer_4891 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5066066 10872920 Runsl_4373 Runella slithyformis DSM 19594 hypothetical protein YP_004657834.1 5065293 D 761193 CDS YP_004657835.1 338213780 10872921 5066175..5066681 1 NC_015703.1 PFAM: Protein of unknown function (DUF2911); COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sli:Slin_5789 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; hypothetical protein 5066681 10872921 Runsl_4374 Runella slithyformis DSM 19594 hypothetical protein YP_004657835.1 5066175 D 761193 CDS YP_004657836.1 338213781 10872922 5066947..5067882 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; InterPro IPR011445:IPR011933; KEGG: dfe:Dfer_5768 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Double-transmembrane region, N-terminal; xylose isomerase domain-containing protein 5067882 10872922 Runsl_4375 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004657836.1 5066947 D 761193 CDS YP_004657837.1 338213782 10872923 5068197..5070254 1 NC_015703.1 PFAM: Aerotolerance regulator N-terminal; CARDB; TIGRFAM: N-terminal double-transmembrane domain; COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: sli:Slin_6275 hypothetical protein; SPTR: uncharacterized protein; double-transmembrane region domain-containing protein 5070254 10872923 Runsl_4376 Runella slithyformis DSM 19594 double-transmembrane region domain-containing protein YP_004657837.1 5068197 D 761193 CDS YP_004657838.1 338213783 10872924 5070338..5071183 1 NC_015703.1 KEGG: aas:Aasi_1435 hypothetical protein; SPTR: ankyrin repeat protein; hypothetical protein 5071183 10872924 Runsl_4377 Runella slithyformis DSM 19594 hypothetical protein YP_004657838.1 5070338 D 761193 CDS YP_004657839.1 338213784 10872925 complement(5071247..5071699) 1 NC_015703.1 InterPro IPR012910; KEGG: cpi:Cpin_5200 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; hypothetical protein 5071699 10872925 Runsl_4378 Runella slithyformis DSM 19594 hypothetical protein YP_004657839.1 5071247 R 761193 CDS YP_004657840.1 338213785 10872926 complement(5071880..5074285) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; COGs: COG0579 dehydrogenase; InterPro IPR006231; KEGG: dfe:Dfer_4539 malate:quinone oxidoreductase; PFAM: Malate:quinone-oxidoreductase; PRIAM: Malate dehydrogenase (acceptor); SPTR: Probable malate:quinone oxidoreductase; TonB-dependent receptor plug 5074285 10872926 Runsl_4379 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004657840.1 5071880 R 761193 CDS YP_004657841.1 338213786 10872927 complement(5074449..5075564) 1 NC_015703.1 PFAM: Malate:quinone oxidoreductase (Mqo); TIGRFAM: malate:quinone-oxidoreductase; InterPro IPR019734:IPR001440:IPR013105; KEGG: azl:AZL_022990 hypothetical protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: uncharacterized protein; malate dehydrogenase 5075564 10872927 Runsl_4380 Runella slithyformis DSM 19594 malate dehydrogenase YP_004657841.1 5074449 R 761193 CDS YP_004657842.1 338213787 10872928 complement(5075701..5077824) 1 NC_015703.1 PFAM: Tetratricopeptide repeat; Dolichyl-phosphate-mannose-protein mannosyltransferase; InterPro IPR019734:IPR001440; KEGG: dfe:Dfer_5482 tetratricopeptide domain protein; PFAM: Tetratricopeptide TPR-1; SPTR: Tetratricopeptide domain protein; hypothetical protein 5077824 10872928 Runsl_4381 Runella slithyformis DSM 19594 hypothetical protein YP_004657842.1 5075701 R 761193 CDS YP_004657843.1 338213788 10872929 5077910..5078644 1 NC_015703.1 COGs: COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; HAMAP: Phosphoribosylaminoimidazole-succinocarboxamide synthase; InterPro IPR001636; KEGG: dfe:Dfer_5481 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; PRIAM: Phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: Phosphoribosylaminoimidazole-succinocarboxamide synthase; hypothetical protein 5078644 10872929 Runsl_4382 Runella slithyformis DSM 19594 hypothetical protein YP_004657843.1 5077910 D 761193 CDS YP_004657844.1 338213789 10872930 5078691..5079638 1 NC_015703.1 PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: dfe:Dfer_5480 sulfate transporter/antisigma-factor antagonist STAS; SPTR: Sulfate transporter/antisigma-factor antagonist STAS; phosphoribosylaminoimidazolesuccinocarboxamide synthase 5079638 10872930 Runsl_4383 Runella slithyformis DSM 19594 phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_004657844.1 5078691 D 761193 CDS YP_004657845.1 338213790 10872931 5079732..5080160 1 NC_015703.1 PFAM: STAS domain; COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III; HAMAP: Ribonuclease Z; InterPro IPR013471; KEGG: sli:Slin_2672 beta-lactamase; SPTR: Ribonuclease Z; sulfate transporter/antisigma-factor antagonist STAS 5080160 10872931 Runsl_4384 Runella slithyformis DSM 19594 sulfate transporter/antisigma-factor antagonist STAS YP_004657845.1 5079732 D 761193 CDS YP_004657846.1 338213791 10872932 5080160..5081080 1 NC_015703.1 PFAM: Metallo-beta-lactamase superfamily; TIGRFAM: ribonuclease Z; KEGG: dfe:Dfer_5010 hypothetical protein; SPTR: uncharacterized protein; ribonuclease Z 5081080 10872932 Runsl_4385 Runella slithyformis DSM 19594 ribonuclease Z YP_004657846.1 5080160 D 761193 CDS YP_004657847.1 338213792 10872933 complement(5081168..5081761) 1 NC_015703.1 COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR013027:IPR006005; KEGG: dfe:Dfer_5478 glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Glutamate synthase (NADH); SPTR: Glutamate synthase, NADH/NADPH, small subunit; TIGRFAM: Glutamate synthase, NADH/NADPH, small subunit 1; hypothetical protein 5081761 10872933 Runsl_4386 Runella slithyformis DSM 19594 hypothetical protein YP_004657847.1 5081168 R 761193 CDS YP_004657848.1 338213793 10872934 complement(5081989..5083524) 1 NC_015703.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit; COGs: COG0069 Glutamate synthase domain 2; InterPro IPR000583:IPR006982:IPR002932:IPR002489; KEGG: dfe:Dfer_5479 glutamate synthase (ferredoxin); PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal; PRIAM: Glutamate synthase (ferredoxin); SPTR: Glutamate synthase (Ferredoxin); glutamate synthase NADH/NADPH small subunit 5083524 10872934 Runsl_4387 Runella slithyformis DSM 19594 glutamate synthase NADH/NADPH small subunit YP_004657848.1 5081989 R 761193 CDS YP_004657849.1 338213794 10872935 complement(5083695..5088275) 1 NC_015703.1 PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sli:Slin_3261 beta-lactamase; PRIAM: Beta-lactamase; SPTR: Beta-lactamase; glutamate synthase 5088275 10872935 Runsl_4388 Runella slithyformis DSM 19594 glutamate synthase YP_004657849.1 5083695 R 761193 CDS YP_004657850.1 338213795 10872936 complement(5088602..5089327) 1 NC_015703.1 PFAM: Metallo-beta-lactamase superfamily; COGs: COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain; HAMAP: Phosphoribosylformylglycinamidine synthase 2; InterPro IPR000728:IPR010918:IPR010074; KEGG: sli:Slin_2274 phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: Phosphoribosylformylglycinamidine synthase 2; TIGRFAM: Phosphoribosylformylglycinamidine synthase II; beta-lactamase 5089327 10872936 Runsl_4389 Runella slithyformis DSM 19594 beta-lactamase YP_004657850.1 5088602 R 761193 CDS YP_004657851.1 338213796 10872937 5089492..5091759 1 NC_015703.1 PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase II; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR003593:IPR005074:IPR001140:IPR003439; KEGG: shg:Sph21_0591 xenobiotic-transporting ATPase; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Bacteriocin ABC transporter, ATP-binding/permease; phosphoribosylformylglycinamidine synthase 2 5091759 10872937 Runsl_4390 Runella slithyformis DSM 19594 phosphoribosylformylglycinamidine synthase 2 YP_004657851.1 5089492 D 761193 CDS YP_004657852.1 338213797 10872938 complement(5091835..5094093) 1 NC_015703.1 PFAM: ABC transporter transmembrane region; Peptidase C39 family; ABC transporter; InterPro IPR013740; KEGG: dfe:Dfer_1269 hypothetical protein; PFAM: Redoxin; SPTR: uncharacterized protein; xenobiotic-transporting ATPase 5094093 10872938 Runsl_4391 Runella slithyformis DSM 19594 xenobiotic-transporting ATPase YP_004657852.1 5091835 R 761193 CDS YP_004657853.1 338213798 10872939 complement(5094170..5094688) 1 NC_015703.1 PFAM: AhpC/TSA family; KEGG: shg:Sph21_0589 hypothetical protein; SPTR: uncharacterized protein; redoxin domain-containing protein 5094688 10872939 Runsl_4392 Runella slithyformis DSM 19594 redoxin domain-containing protein YP_004657853.1 5094170 R 761193 CDS YP_004657854.1 338213799 10872940 complement(5094694..5095323) 1 NC_015703.1 hypothetical protein 5095323 10872940 Runsl_4393 Runella slithyformis DSM 19594 hypothetical protein YP_004657854.1 5094694 R 761193 CDS YP_004657855.1 338213800 10872941 complement(5095555..5095749) 1 NC_015703.1 InterPro IPR001387; KEGG: chu:CHU_0810 transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: uncharacterized protein; hypothetical protein 5095749 10872941 Runsl_4394 Runella slithyformis DSM 19594 hypothetical protein YP_004657855.1 5095555 R 761193 CDS YP_004657856.1 338213801 10872942 5096538..5096759 1 NC_015703.1 PFAM: Helix-turn-helix; KEGG: sli:Slin_3425 hypothetical protein; SPTR: uncharacterized protein; helix-turn-helix domain-containing protein 5096759 10872942 Runsl_4395 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004657856.1 5096538 D 761193 CDS YP_004657857.1 338213802 10872943 5096935..5097549 1 NC_015703.1 COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056; KEGG: chu:CHU_1605 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: Ribulose-phosphate 3-epimerase; TIGRFAM: Ribulose-phosphate 3-epimerase; hypothetical protein 5097549 10872943 Runsl_4396 Runella slithyformis DSM 19594 hypothetical protein YP_004657857.1 5096935 D 761193 CDS YP_004657858.1 338213803 10872944 complement(5097591..5098247) 1 NC_015703.1 PFAM: Ribulose-phosphate 3 epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; InterPro IPR018060:IPR000005:IPR014048; KEGG: amr:AM1_4991 methylated DNA-protein cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; ribulose-phosphate 3-epimerase 5098247 10872944 Runsl_4397 Runella slithyformis DSM 19594 ribulose-phosphate 3-epimerase YP_004657858.1 5097591 R 761193 CDS YP_004657859.1 338213804 10872945 complement(5098311..5099162) 1 NC_015703.1 PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; TIGRFAM: O-6-methylguanine DNA methyltransferase; AraC family transcriptional regulator 5099162 10872945 Runsl_4398 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004657859.1 5098311 R 761193 CDS YP_004657860.1 338213805 10872946 complement(5099249..5099653) 1 NC_015703.1 InterPro IPR000086; KEGG: dfe:Dfer_5005 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; hypothetical protein 5099653 10872946 Runsl_4399 Runella slithyformis DSM 19594 hypothetical protein YP_004657860.1 5099249 R 761193 CDS YP_004657861.1 338213806 10872947 complement(5099719..5100273) 1 NC_015703.1 PFAM: NUDIX domain; KEGG: sli:Slin_1645 hypothetical protein; SPTR: uncharacterized protein; NUDIX hydrolase 5100273 10872947 Runsl_4400 Runella slithyformis DSM 19594 NUDIX hydrolase YP_004657861.1 5099719 R 761193 CDS YP_004657862.1 338213807 10872948 5100388..5101266 1 NC_015703.1 PFAM: Protein of unknown function (DUF2911); COGs: COG1259 conserved hypothetical protein; InterPro IPR003729:IPR001943; KEGG: dfe:Dfer_1242 protein of unknown function DUF151; PFAM: Protein of unknown function DUF151; UvrB/UvrC protein; SPTR: uncharacterized protein; hypothetical protein 5101266 10872948 Runsl_4401 Runella slithyformis DSM 19594 hypothetical protein YP_004657862.1 5100388 D 761193 CDS YP_004657863.1 338213808 10872949 complement(5101345..5101941) 1 NC_015703.1 PFAM: Uncharacterised ACR, COG1259; UvrB/uvrC motif; hypothetical protein 5101941 10872949 Runsl_4402 Runella slithyformis DSM 19594 hypothetical protein YP_004657863.1 5101345 R 761193 CDS YP_004657864.1 338213809 10872950 5102047..5102184 1 NC_015703.1 COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR014730:IPR014731; KEGG: dfe:Dfer_1241 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SPTR: Electron transfer flavoprotein alpha subunit; hypothetical protein 5102184 10872950 Runsl_4403 Runella slithyformis DSM 19594 hypothetical protein YP_004657864.1 5102047 D 761193 CDS YP_004657865.1 338213810 10872951 complement(5102146..5103108) 1 NC_015703.1 PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain; COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR014730; KEGG: dfe:Dfer_1240 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SPTR: Electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein subunit alpha 5103108 10872951 Runsl_4404 Runella slithyformis DSM 19594 electron transfer flavoprotein subunit alpha YP_004657865.1 5102146 R 761193 CDS YP_004657866.1 338213811 10872952 complement(5103232..5103969) 1 NC_015703.1 PFAM: Electron transfer flavoprotein domain; KEGG: dfe:Dfer_1239 hypothetical protein; SPTR: uncharacterized protein; electron transfer flavoprotein alpha/beta-subunit 5103969 10872952 Runsl_4405 Runella slithyformis DSM 19594 electron transfer flavoprotein alpha/beta-subunit YP_004657866.1 5103232 R 761193 CDS YP_004657867.1 338213812 10872953 5104075..5104401 1 NC_015703.1 COGs: COG0621 2-methylthioadenine synthetase; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; InterProIPR006638:IPR013848:IPR007197:IPR002792:IPR 005839:IPR006463; KEGG: dfe:Dfer_2727 (dimethylallyl)adenosine tRNA methylthiotransferase; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: RNA modification enzyme, MiaB family; TIGRFAM: Methylthiotransferase; tRNA-i(6)A37 modification enzyme MiaB; hypothetical protein 5104401 10872953 Runsl_4406 Runella slithyformis DSM 19594 hypothetical protein YP_004657867.1 5104075 D 761193 CDS YP_004657868.1 338213813 10872954 5104593..5106050 1 NC_015703.1 PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; radical SAM methylthiotransferase, MiaB/RimO family; COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains; InterPro IPR003593:IPR002078:IPR002197; KEGG: sli:Slin_0990 fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; SPTR: Sigma54 specific transcriptional regulator, Fis family; (dimethylallyl)adenosine tRNA methylthiotransferase 5106050 10872954 Runsl_4407 Runella slithyformis DSM 19594 (dimethylallyl)adenosine tRNA methylthiotransferase YP_004657868.1 5104593 D 761193 CDS YP_004657869.1 338213814 10872955 5106190..5107527 1 NC_015703.1 PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; KEGG: sli:Slin_0989 hypothetical protein; SPTR: uncharacterized protein; Fis family transcriptional regulator 5107527 10872955 Runsl_4408 Runella slithyformis DSM 19594 Fis family transcriptional regulator YP_004657869.1 5106190 D 761193 CDS YP_004657870.1 338213815 10872956 5107508..5108056 1 NC_015703.1 KEGG: sli:Slin_0988 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5108056 10872956 Runsl_4409 Runella slithyformis DSM 19594 hypothetical protein YP_004657870.1 5107508 D 761193 CDS YP_004657871.1 338213816 10872957 5108171..5108989 1 NC_015703.1 InterPro IPR004692; KEGG: dfe:Dfer_2731 preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; SPTR: Preprotein translocase, SecG subunit; TIGRFAM: Preprotein translocase SecG subunit; hypothetical protein 5108989 10872957 Runsl_4410 Runella slithyformis DSM 19594 hypothetical protein YP_004657871.1 5108171 D 761193 CDS YP_004657872.1 338213817 10872958 5109147..5109515 1 NC_015703.1 PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit; preprotein translocase subunit SecG 5109515 10872958 Runsl_4411 Runella slithyformis DSM 19594 preprotein translocase subunit SecG YP_004657872.1 5109147 D 761193 CDS YP_004657873.1 338213818 10872959 complement(5110074..5110175) 1 NC_015703.1 KEGG: mea:Mex_2p0338 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5110175 10872959 Runsl_4412 Runella slithyformis DSM 19594 hypothetical protein YP_004657873.1 5110074 R 761193 CDS YP_004657874.1 338213819 10872960 5110230..5110712 1 NC_015703.1 PFAM: DNA N-6-adenine-methyltransferase (Dam); hypothetical protein 5110712 10872960 Runsl_4413 Runella slithyformis DSM 19594 hypothetical protein YP_004657874.1 5110230 D 761193 CDS YP_004657875.1 338213820 10872961 complement(5110707..5110910) 1 NC_015703.1 InterPro IPR010324; KEGG: mct:MCR_0519 type II restriction endonuclease DpnI; PFAM: Dam-replacing; PRIAM: Type II site-specific deoxyribonuclease; SPTR: type II restriction endonuclease DpnI; hypothetical protein 5110910 10872961 Runsl_4414 Runella slithyformis DSM 19594 hypothetical protein YP_004657875.1 5110707 R 761193 CDS YP_004657876.1 338213821 10872962 complement(5110939..5111718) 1 NC_015703.1 PFAM: Dam-replacing family; COGs: COG5646 conserved hypothetical protein; InterPro IPR014922; KEGG: rci:RCIX1712 hypothetical protein; PFAM: Protein of unknown function DUF1801; SPTR: uncharacterized protein; type II site-specific deoxyribonuclease 5111718 10872962 Runsl_4415 Runella slithyformis DSM 19594 type II site-specific deoxyribonuclease YP_004657876.1 5110939 R 761193 CDS YP_004657877.1 338213822 10872963 complement(5111834..5112208) 1 NC_015703.1 PFAM: Domain of unknown function (DU1801); COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR003661:IPR003594; KEGG: sli:Slin_1994 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Histidine kinase; hypothetical protein 5112208 10872963 Runsl_4416 Runella slithyformis DSM 19594 hypothetical protein YP_004657877.1 5111834 R 761193 CDS YP_004657878.1 338213823 10872964 complement(5112305..5113414) 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; InterPro IPR013148; KEGG: fjo:Fjoh_3966 glycosyl hydrolase 32 protein; PFAM: Glycosyl hydrolases family 32, N-terminal; SPTR: Glycoside hydrolase-like protein; integral membrane sensor signal transduction histidine kinase 5113414 10872964 Runsl_4417 Runella slithyformis DSM 19594 integral membrane sensor signal transduction histidine kinase YP_004657878.1 5112305 R 761193 CDS YP_004657879.1 338213824 10872965 complement(5113487..5114962) 1 NC_015703.1 PFAM: Glycosyl hydrolases family 32 N-terminal domain; COGs: COG0438 Glycosyltransferase; InterPro IPR001296:IPR006380:IPR012821; KEGG: lby:Lbys_0264 sucrose-phosphate synthase., sucrose-phosphate phosphatase; PFAM: Sucrose-6F-phosphate phosphohydrolase, plant/cyanobacteria; Glycosyl transferase, group 1; PRIAM: Sucrose-phosphate synthase., Sucrose-phosphate phosphatase; SPTR: Sucrose-phosphate synthase., Sucrose-phosphate phosphatase; TIGRFAM: Sucrose phosphate synthase, sucrose phosphatase-like region; glycosyl hydrolase 32 domain-containing protein 5114962 10872965 Runsl_4418 Runella slithyformis DSM 19594 glycosyl hydrolase 32 domain-containing protein YP_004657879.1 5113487 R 761193 CDS YP_004657880.1 338213825 10872966 5115082..5117253 1 NC_015703.1 PFAM: Sucrose synthase; Glycosyl transferases group 1; Sucrose-6F-phosphate phosphohydrolase; TIGRFAM: sucrose-6F-phosphate phosphohydrolase; sucrose-phosphate synthase, , glycosyltransferase domain; sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial; manually curated; sucrose phosphate synthase sucrose phosphatase-like domain-containing protein 5117253 10872966 Runsl_4419 Runella slithyformis DSM 19594 sucrose phosphate synthase sucrose phosphatase-like domain-containing protein YP_004657880.1 5115082 D 761193 CDS YP_004657881.1 338213826 10872968 complement(5117603..5118748) 1 NC_015703.1 PFAM: Na+/H+ antiporter 1; TIGRFAM: Na+/H+ antiporter NhaA; KEGG: chu:CHU_0224 hypothetical protein; SPTR: uncharacterized protein; Na(+)/H(+) antiporter NhaA 5118748 10872968 Runsl_4421 Runella slithyformis DSM 19594 Na(+)/H(+) antiporter NhaA YP_004657881.1 5117603 R 761193 CDS YP_004657882.1 338213827 10872969 complement(5118971..5119684) 1 NC_015703.1 KEGG: chu:CHU_0225 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5119684 10872969 Runsl_4422 Runella slithyformis DSM 19594 hypothetical protein YP_004657882.1 5118971 R 761193 CDS YP_004657883.1 338213828 10872970 complement(5119693..5120175) 1 NC_015703.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: chu:CHU_0226 cyclic nucleotide binding regulatory protein; PFAM: Cyclic nucleotide-binding; SPTR: Cyclic nucleotide binding regulatory protein; hypothetical protein 5120175 10872970 Runsl_4423 Runella slithyformis DSM 19594 hypothetical protein YP_004657883.1 5119693 R 761193 CDS YP_004657884.1 338213829 10872971 complement(5120255..5120818) 1 NC_015703.1 PFAM: Cyclic nucleotide-binding domain; KEGG: rca:Rcas_0119 hypothetical protein; SPTR: uncharacterized protein; Crp/Fnr family transcriptional regulator 5120818 10872971 Runsl_4424 Runella slithyformis DSM 19594 Crp/Fnr family transcriptional regulator YP_004657884.1 5120255 R 761193 CDS YP_004657885.1 338213830 10872972 complement(5120827..5121513) 1 NC_015703.1 COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; InterPro IPR003782; KEGG: sli:Slin_5146 electron transporter SCO1/SenC; PFAM: Copper chaperone SCO1/SenC; SPTR: Electron transport protein SCO1/SenC; hypothetical protein 5121513 10872972 Runsl_4425 Runella slithyformis DSM 19594 hypothetical protein YP_004657885.1 5120827 R 761193 CDS YP_004657886.1 338213831 10872973 complement(5121638..5122312) 1 NC_015703.1 PFAM: SCO1/SenC; COGs: COG2849 conserved hypothetical protein; KEGG: sli:Slin_5145 hypothetical protein; SPTR: MORN variant repeat protein; electron transport protein SCO1/SenC 5122312 10872973 Runsl_4426 Runella slithyformis DSM 19594 electron transport protein SCO1/SenC YP_004657886.1 5121638 R 761193 CDS YP_004657887.1 338213832 10872974 complement(5122251..5122745) 1 NC_015703.1 PFAM: MORN repeat variant; KEGG: sli:Slin_5144 hypothetical protein; SPTR: Conserved hypothetical lipoprotein; hypothetical protein 5122745 10872974 Runsl_4427 Runella slithyformis DSM 19594 hypothetical protein YP_004657887.1 5122251 R 761193 CDS YP_004657888.1 338213833 10872975 complement(5122821..5123579) 1 NC_015703.1 KEGG: dfe:Dfer_1267 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5123579 10872975 Runsl_4428 Runella slithyformis DSM 19594 hypothetical protein YP_004657888.1 5122821 R 761193 CDS YP_004657889.1 338213834 10872976 complement(5123844..5124212) 1 NC_015703.1 COGs: COG3832 conserved hypothetical protein; InterPro IPR013538; KEGG: chu:CHU_1110 hypothetical protein; PFAM: Activator of Hsp90 ATPase homologue 1-like; SPTR: uncharacterized protein; hypothetical protein 5124212 10872976 Runsl_4429 Runella slithyformis DSM 19594 hypothetical protein YP_004657889.1 5123844 R 761193 CDS YP_004657890.1 338213835 10872977 complement(5124261..5124764) 1 NC_015703.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein; manually curated; Activator of Hsp90 ATPase 1 family protein 5124764 10872977 Runsl_4430 Runella slithyformis DSM 19594 Activator of Hsp90 ATPase 1 family protein YP_004657890.1 5124261 R 761193 CDS YP_004657891.1 338213836 10872979 complement(5125026..5125409) 1 NC_015703.1 KEGG: chu:CHU_3597 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5125409 10872979 Runsl_4432 Runella slithyformis DSM 19594 hypothetical protein YP_004657891.1 5125026 R 761193 CDS YP_004657892.1 338213837 10872980 complement(5125427..5125786) 1 NC_015703.1 KEGG: sal:Sala_2944 DoxX; SPTR: DoxX; hypothetical protein 5125786 10872980 Runsl_4433 Runella slithyformis DSM 19594 hypothetical protein YP_004657892.1 5125427 R 761193 CDS YP_004657893.1 338213838 10872981 complement(5125793..5125951) 1 NC_015703.1 hypothetical protein 5125951 10872981 Runsl_4434 Runella slithyformis DSM 19594 hypothetical protein YP_004657893.1 5125793 R 761193 CDS YP_004657894.1 338213839 10872982 complement(5125945..5126166) 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 5126166 10872982 Runsl_4435 Runella slithyformis DSM 19594 hypothetical protein YP_004657894.1 5125945 R 761193 CDS YP_004657895.1 338213840 10872984 complement(5128064..5130892) 1 NC_015703.1 PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit; KEGG: dfe:Dfer_0195 hypothetical protein; SPTR: uncharacterized protein; carbamoyl-phosphate synthase large subunit 5130892 10872984 Runsl_4437 Runella slithyformis DSM 19594 carbamoyl-phosphate synthase large subunit YP_004657895.1 5128064 R 761193 CDS YP_004657896.1 338213841 10872985 5131207..5132217 1 NC_015703.1 KEGG: dfe:Dfer_0194 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5132217 10872985 Runsl_4438 Runella slithyformis DSM 19594 hypothetical protein YP_004657896.1 5131207 D 761193 CDS YP_004657897.1 338213842 10872986 5132287..5133447 1 NC_015703.1 manually curated; hypothetical protein 5133447 10872986 Runsl_4439 Runella slithyformis DSM 19594 hypothetical protein YP_004657897.1 5132287 D 761193 CDS YP_004657898.1 338213843 10872988 5133801..5135933 1 NC_015703.1 PFAM: Uncharacterised BCR, COG1649; COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: fjo:Fjoh_1286 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; hypothetical protein 5135933 10872988 Runsl_4441 Runella slithyformis DSM 19594 hypothetical protein YP_004657898.1 5133801 D 761193 CDS YP_004657899.1 338213844 10872989 5136276..5137226 1 NC_015703.1 PFAM: Carbon-nitrogen hydrolase; COGs: COG0314 Molybdopterin converting factor large subunit; InterPro IPR003448; KEGG: cpi:Cpin_0207 molybdopterin biosynthesis MoaE protein; PFAM: Molybdopterin biosynthesis MoaE; SPTR: MoaE protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 5137226 10872989 Runsl_4442 Runella slithyformis DSM 19594 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004657899.1 5136276 D 761193 CDS YP_004657900.1 338213845 10872990 complement(5137472..5137888) 1 NC_015703.1 PFAM: MoaE protein; COGs: COG1408 phosphohydrolase; InterPro IPR004843; KEGG: dfe:Dfer_4076 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; molybdopterin biosynthesis protein MoaE 5137888 10872990 Runsl_4443 Runella slithyformis DSM 19594 molybdopterin biosynthesis protein MoaE YP_004657900.1 5137472 R 761193 CDS YP_004657901.1 338213846 10872991 5138028..5139296 1 NC_015703.1 PFAM: Calcineurin-like phosphoesterase; COGs: COG2388 acetyltransferase; KEGG: dmr:Deima_0861 acetyltransferase; SPTR: Acetyltransferase; metallophosphoesterase 5139296 10872991 Runsl_4444 Runella slithyformis DSM 19594 metallophosphoesterase YP_004657901.1 5138028 D 761193 CDS YP_004657902.1 338213847 10872992 5139323..5139595 1 NC_015703.1 acetyltransferase 5139595 10872992 Runsl_4445 Runella slithyformis DSM 19594 acetyltransferase YP_004657902.1 5139323 D 761193 CDS YP_004657903.1 338213848 10872993 5139605..5139709 1 NC_015703.1 COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094:IPR004113; KEGG: azo:azo3432 D-lactate dehydrogenase; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; PRIAM: D-lactate dehydrogenase (cytochrome); SPTR: Probable D-lactate dehydrogenase; hypothetical protein 5139709 10872993 Runsl_4446 Runella slithyformis DSM 19594 hypothetical protein YP_004657903.1 5139605 D 761193 CDS YP_004657904.1 338213849 10872994 5139706..5141079 1 NC_015703.1 PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; TIGRFAM: glycolate oxidase, subunit GlcD; SPTR: Transposase IS4 family protein; D-lactate dehydrogenase 5141079 10872994 Runsl_4447 Runella slithyformis DSM 19594 D-lactate dehydrogenase YP_004657904.1 5139706 D 761193 CDS YP_004657905.1 338213850 10872995 5141286..5142632 1 NC_015703.1 COGs: COG1764 redox protein regulator of disulfide bond formation; InterPro IPR003718:IPR019904; KEGG: chu:CHU_2252 osmotically inducible protein; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: Osmotically inducible protein; TIGRFAM: Peroxiredoxin, osmotically inducible protein C, subgroup; hypothetical protein 5142632 10872995 Runsl_4448 Runella slithyformis DSM 19594 hypothetical protein YP_004657905.1 5141286 D 761193 CDS YP_004657906.1 338213851 10872996 complement(5142664..5143107) 1 NC_015703.1 PFAM: OsmC-like protein; TIGRFAM: peroxiredoxin, OsmC subfamily; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: phe:Phep_3453 major facilitator superfamily protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; OsmC subfamily peroxiredoxin 5143107 10872996 Runsl_4449 Runella slithyformis DSM 19594 OsmC subfamily peroxiredoxin YP_004657906.1 5142664 R 761193 CDS YP_004657907.1 338213852 10872997 complement(5143250..5144596) 1 NC_015703.1 PFAM: Major Facilitator Superfamily; KEGG: phe:Phep_3454 hypothetical protein; SPTR: uncharacterized protein; major facilitator superfamily protein 5144596 10872997 Runsl_4450 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004657907.1 5143250 R 761193 CDS YP_004657908.1 338213853 10872998 complement(5144707..5144922) 1 NC_015703.1 InterPro IPR001647; KEGG: phe:Phep_3455 regulatory protein TetR; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; hypothetical protein 5144922 10872998 Runsl_4451 Runella slithyformis DSM 19594 hypothetical protein YP_004657908.1 5144707 R 761193 CDS YP_004657909.1 338213854 10872999 complement(5144993..5145583) 1 NC_015703.1 PFAM: Bacterial regulatory proteins, tetR family; TetR family transcriptional regulator 5145583 10872999 Runsl_4452 Runella slithyformis DSM 19594 TetR family transcriptional regulator YP_004657909.1 5144993 R 761193 CDS YP_004657910.1 338213855 10873000 5145652..5145768 1 NC_015703.1 KEGG: dfe:Dfer_3342 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5145768 10873000 Runsl_4453 Runella slithyformis DSM 19594 hypothetical protein YP_004657910.1 5145652 D 761193 CDS YP_004657911.1 338213856 10873001 complement(5145815..5146414) 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; KEGG: dfe:Dfer_3341 protein of unknown function DUF1486; SPTR: uncharacterized protein; hypothetical protein 5146414 10873001 Runsl_4454 Runella slithyformis DSM 19594 hypothetical protein YP_004657911.1 5145815 R 761193 CDS YP_004657912.1 338213857 10873002 complement(5146475..5146876) 1 NC_015703.1 PFAM: SnoaL-like polyketide cyclase; TIGRFAM: conserved hypothetical protein, steroid delta-isomerase-related; COGs: COG2367 Beta-lactamase class A; InterPro IPR001466; KEGG: aby:ABAYE3623 beta-lactamase VEB-1; PFAM: Beta-lactamase-related; PRIAM: Beta-lactamase; SPTR: Beta-lactamase; hypothetical protein 5146876 10873002 Runsl_4455 Runella slithyformis DSM 19594 hypothetical protein YP_004657912.1 5146475 R 761193 CDS YP_004657913.1 338213858 10873003 complement(5147053..5147949) 1 NC_015703.1 PFAM: Beta-lactamase; COGs: COG1231 Monoamine oxidase; InterPro IPR002937; KEGG: rpf:Rpic12D_4699 amine oxidase; PFAM: Amine oxidase; PRIAM: Polyamine oxidase; SPTR: Amine oxidase; beta-lactamase 5147949 10873003 Runsl_4456 Runella slithyformis DSM 19594 beta-lactamase YP_004657913.1 5147053 R 761193 CDS YP_004657914.1 338213859 10873004 complement(5148032..5149393) 1 NC_015703.1 PFAM: Flavin containing amine oxidoreductase; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: cpc:Cpar_0956 NmrA family protein; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NmrA family protein; polyamine oxidase 5149393 10873004 Runsl_4457 Runella slithyformis DSM 19594 polyamine oxidase YP_004657914.1 5148032 R 761193 CDS YP_004657915.1 338213860 10873005 complement(5149456..5150334) 1 NC_015703.1 PFAM: NmrA-like family; KEGG: sli:Slin_3048 rifampin ADP-ribosyl transferase; SPTR: Rifampin ADP-ribosyl transferase; NAD-dependent epimerase/dehydratase 5150334 10873005 Runsl_4458 Runella slithyformis DSM 19594 NAD-dependent epimerase/dehydratase YP_004657915.1 5149456 R 761193 CDS YP_004657916.1 338213861 10873006 complement(5150381..5150830) 1 NC_015703.1 PFAM: DNA/RNA tunnel of bacterial DNA dependent RNA polymerase; COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014001:IPR007409:IPR006935; KEGG: chu:CHU_2936 restriction enzyme type I helicase subunit; type I restriction enzyme HsdR; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; SPTR: Restriction enzyme type I helicase subunit; type I restriction enzyme HsdR; rifampin ADP-ribosyl transferase 5150830 10873006 Runsl_4459 Runella slithyformis DSM 19594 rifampin ADP-ribosyl transferase YP_004657916.1 5150381 R 761193 CDS YP_004657917.1 338213862 10873007 complement(5151124..5154162) 1 NC_015703.1 PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: sli:Slin_6960 transcriptional regulator, ArsR family; SMART: ATPase, AAA+ type, core; SPTR: Transcriptional regulator, ArsR family; Restriction endonuclease, type I, EcoRI, R subunit/type III 5154162 10873007 Runsl_4460 Runella slithyformis DSM 19594 Restriction endonuclease, type I, EcoRI, R subunit/type III YP_004657917.1 5151124 R 761193 CDS YP_004657918.1 338213863 10873008 5154314..5155489 1 NC_015703.1 COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: mmq:MmarC5_0640 restriction modification system DNA specificity subunit; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Restriction modification system DNA specificity domain; ATPase AAA 5155489 10873008 Runsl_4461 Runella slithyformis DSM 19594 ATPase AAA YP_004657918.1 5154314 D 761193 CDS YP_004657919.1 338213864 10873009 complement(5155663..5157024) 1 NC_015703.1 PFAM: Type I restriction modification DNA specificity domain; restriction modification system DNA specificity domain-containing protein 5157024 10873009 Runsl_4462 Runella slithyformis DSM 19594 restriction modification system DNA specificity domain-containing protein YP_004657919.1 5155663 R 761193 CDS YP_004657920.1 338213865 10873010 complement(5157014..5157127) 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 5157127 10873010 Runsl_4463 Runella slithyformis DSM 19594 hypothetical protein YP_004657920.1 5157014 R 761193 CDS YP_004657921.1 338213866 10873013 complement(5159862..5161514) 1 NC_015703.1 InterPro IPR010686; KEGG: dfe:Dfer_1678 protein of unknown function DUF1264; PFAM: Protein of unknown function DUF1264; SPTR: uncharacterized protein; hypothetical protein 5161514 10873013 Runsl_4466 Runella slithyformis DSM 19594 hypothetical protein YP_004657921.1 5159862 R 761193 CDS YP_004657922.1 338213867 10873014 5161869..5162651 1 NC_015703.1 PFAM: Protein of unknown function (DUF1264); COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: fba:FIC_01703 L-sorbosone dehydrogenase; SPTR: L-sorbosone dehydrogenase; hypothetical protein 5162651 10873014 Runsl_4467 Runella slithyformis DSM 19594 hypothetical protein YP_004657922.1 5161869 D 761193 CDS YP_004657923.1 338213868 10873015 5162853..5164091 1 NC_015703.1 PFAM: Glucose / Sorbosone dehydrogenase; InterPro IPR013658; KEGG: fba:FIC_01704 hypothetical protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; SPTR: uncharacterized protein; L-sorbosone dehydrogenase 5164091 10873015 Runsl_4468 Runella slithyformis DSM 19594 L-sorbosone dehydrogenase YP_004657923.1 5162853 D 761193 CDS YP_004657924.1 338213869 10873016 5164091..5165065 1 NC_015703.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: chu:CHU_2072 hypothetical protein; SPTR: uncharacterized protein; SMP-30/gluconolaconase/LRE-like region-containing protein 5165065 10873016 Runsl_4469 Runella slithyformis DSM 19594 SMP-30/gluconolaconase/LRE-like region-containing protein YP_004657924.1 5164091 D 761193 CDS YP_004657925.1 338213870 10873017 5165102..5165572 1 NC_015703.1 PFAM: Protein of unknown function (DUF2938); COGs: COG3546 Mn-containing catalase; InterPro IPR007760; KEGG: cpi:Cpin_5037 catalase; PFAM: Catalase, manganese; PRIAM: Catalase; SPTR: Catalase; hypothetical protein 5165572 10873017 Runsl_4470 Runella slithyformis DSM 19594 hypothetical protein YP_004657925.1 5165102 D 761193 CDS YP_004657926.1 338213871 10873018 5165653..5166594 1 NC_015703.1 PFAM: Manganese containing catalase; COGs: COG2761 dithiol-disulfide isomerase involved in polyketide biosynthesis; KEGG: dfe:Dfer_1561 DsbA oxidoreductase; SPTR: DSBA oxidoreductase; catalase 5166594 10873018 Runsl_4471 Runella slithyformis DSM 19594 catalase YP_004657926.1 5165653 D 761193 CDS YP_004657927.1 338213872 10873019 5166805..5167593 1 NC_015703.1 PFAM: DSBA-like thioredoxin domain; COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 013767:IPR013655:IPR013656; KEGG: sli:Slin_0618 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold-4; PAS fold-3; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; DsbA oxidoreductase 5167593 10873019 Runsl_4472 Runella slithyformis DSM 19594 DsbA oxidoreductase YP_004657927.1 5166805 D 761193 CDS YP_004657928.1 338213873 10873020 5168165..5170918 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; KEGG: dfe:Dfer_5722 hypothetical protein; SPTR: uncharacterized protein; PAS/PAC sensor signal transduction histidine kinase 5170918 10873020 Runsl_4473 Runella slithyformis DSM 19594 PAS/PAC sensor signal transduction histidine kinase YP_004657928.1 5168165 D 761193 CDS YP_004657929.1 338213874 10873021 complement(5170969..5172096) 1 NC_015703.1 PFAM: Surface antigen; hypothetical protein 5172096 10873021 Runsl_4474 Runella slithyformis DSM 19594 hypothetical protein YP_004657929.1 5170969 R 761193 CDS YP_004657930.1 338213875 10873022 5172152..5172334 1 NC_015703.1 InterPro IPR006680; KEGG: sli:Slin_3381 amidohydrolase; PFAM: Amidohydrolase 1; SPTR: Amidohydrolase; hypothetical protein 5172334 10873022 Runsl_4475 Runella slithyformis DSM 19594 hypothetical protein YP_004657930.1 5172152 D 761193 CDS YP_004657931.1 338213876 10873023 5172373..5173731 1 NC_015703.1 PFAM: Amidohydrolase; InterPro IPR000923:IPR013428; KEGG: dfe:Dfer_5354 membrane-bound dehydrogenase domain protein; PFAM: Blue (type 1) copper domain; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; amidohydrolase 5173731 10873023 Runsl_4476 Runella slithyformis DSM 19594 amidohydrolase YP_004657931.1 5172373 D 761193 CDS YP_004657932.1 338213877 10873024 complement(5173812..5176664) 1 NC_015703.1 PFAM: Copper binding proteins, plastocyanin/azurin family; TIGRFAM: membrane-bound dehydrogenase domain; KEGG: chu:CHU_1125 hypothetical protein; SPTR: uncharacterized protein; membrane-bound dehydrogenase domain-containing protein 5176664 10873024 Runsl_4477 Runella slithyformis DSM 19594 membrane-bound dehydrogenase domain-containing protein YP_004657932.1 5173812 R 761193 CDS YP_004657933.1 338213878 10873025 5177009..5177344 1 NC_015703.1 hypothetical protein 5177344 10873025 Runsl_4478 Runella slithyformis DSM 19594 hypothetical protein YP_004657933.1 5177009 D 761193 CDS YP_004657934.1 338213879 10873026 5177374..5177520 1 NC_015703.1 hypothetical protein 5177520 10873026 Runsl_4479 Runella slithyformis DSM 19594 hypothetical protein YP_004657934.1 5177374 D 761193 CDS YP_004657935.1 338213880 10873027 5177631..5177756 1 NC_015703.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 013655:IPR013656; KEGG: sli:Slin_0618 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-4; PAS fold-3; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; hypothetical protein 5177756 10873027 Runsl_4480 Runella slithyformis DSM 19594 hypothetical protein YP_004657935.1 5177631 D 761193 CDS YP_004657936.1 338213881 10873028 5178214..5180544 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; KEGG: dfe:Dfer_2156 hypothetical protein; SPTR: uncharacterized protein; PAS/PAC sensor signal transduction histidine kinase 5180544 10873028 Runsl_4481 Runella slithyformis DSM 19594 PAS/PAC sensor signal transduction histidine kinase YP_004657936.1 5178214 D 761193 CDS YP_004657937.1 338213882 10873029 complement(5180624..5180959) 1 NC_015703.1 manually curated; hypothetical protein 5180959 10873029 Runsl_4482 Runella slithyformis DSM 19594 hypothetical protein YP_004657937.1 5180624 R 761193 CDS YP_004657938.1 338213883 10873031 5182059..5182421 1 NC_015703.1 PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb); single-strand binding protein 5182421 10873031 Runsl_4484 Runella slithyformis DSM 19594 single-strand binding protein YP_004657938.1 5182059 D 761193 CDS YP_004657939.1 338213884 10873032 5182817..5183176 1 NC_015703.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: phe:Phep_0177 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; hypothetical protein 5183176 10873032 Runsl_4485 Runella slithyformis DSM 19594 hypothetical protein YP_004657939.1 5182817 D 761193 CDS YP_004657940.1 338213885 10873033 5183553..5184503 1 NC_015703.1 PFAM: alpha/beta hydrolase fold; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR001258; KEGG: cpi:Cpin_1469 NHL repeat containing protein; PFAM: NHL repeat; SPTR: NHL repeat containing protein; alpha/beta hydrolase 5184503 10873033 Runsl_4486 Runella slithyformis DSM 19594 alpha/beta hydrolase YP_004657940.1 5183553 D 761193 CDS YP_004657941.1 338213886 10873034 5184669..5186012 1 NC_015703.1 PFAM: Glucose / Sorbosone dehydrogenase; Membrane bound L-sorbosone dehydrogenase; COGs: COG1023 6-phosphogluconate dehydrogenase; InterPro IPR006115:IPR006114:IPR004849; KEGG: cbk:CLL_A1312 6-phosphogluconate dehydrogenase-like protein; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal; PRIAM: Phosphogluconate dehydrogenase (decarboxylating); SPTR: 6-phosphogluconate dehydrogenase (Decarboxylating); TIGRFAM: 6-phosphogluconate dehydrogenase related protein; NHL repeat containing protein 5186012 10873034 Runsl_4487 Runella slithyformis DSM 19594 NHL repeat containing protein YP_004657941.1 5184669 D 761193 CDS YP_004657942.1 338213887 10873035 complement(5186128..5187033) 1 NC_015703.1 PFAM: 6-phosphogluconate dehydrogenase, C-terminal domain; NAD binding domain of 6-phosphogluconate dehydrogenase; TIGRFAM: 6-phosphogluconate dehydrogenase (decarboxylating); 6-phosphogluconate dehydrogenase, decarboxylating; KEGG: sli:Slin_4811 hypothetical protein; SPTR: uncharacterized protein; 6-phosphogluconate dehydrogenase 5187033 10873035 Runsl_4488 Runella slithyformis DSM 19594 6-phosphogluconate dehydrogenase YP_004657942.1 5186128 R 761193 CDS YP_004657943.1 338213888 10873036 complement(5187142..5188665) 1 NC_015703.1 InterPro IPR012910:IPR000531; KEGG: sli:Slin_4810 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: outer membrane protein, probably involved in nutrient binding; hypothetical protein 5188665 10873036 Runsl_4489 Runella slithyformis DSM 19594 hypothetical protein YP_004657943.1 5187142 R 761193 CDS YP_004657944.1 338213889 10873037 complement(5188772..5191945) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: caa:Caka_0919 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; TonB-dependent receptor plug 5191945 10873037 Runsl_4490 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004657944.1 5188772 R 761193 CDS YP_004657945.1 338213890 10873038 5192109..5192984 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: tbo:Thebr_0618 carbohydrate kinase, FGGY-like protein; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; PRIAM: Gluconokinase; SPTR: Carbohydrate kinase, FGGY-like protein; AraC family transcriptional regulator 5192984 10873038 Runsl_4491 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004657945.1 5192109 D 761193 CDS YP_004657946.1 338213891 10873039 5193095..5194606 1 NC_015703.1 PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: gluconate kinase, FGGY type; KEGG: geo:Geob_2464 beta-propeller repeat TECPR; SPTR: Beta-propeller repeat TECPR; gluconokinase 5194606 10873039 Runsl_4492 Runella slithyformis DSM 19594 gluconokinase YP_004657946.1 5193095 D 761193 CDS YP_004657947.1 338213892 10873040 5194711..5195256 1 NC_015703.1 KEGG: dfe:Dfer_2950 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5195256 10873040 Runsl_4493 Runella slithyformis DSM 19594 hypothetical protein YP_004657947.1 5194711 D 761193 CDS YP_004657948.1 338213893 10873041 complement(5195258..5196364) 1 NC_015703.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: sli:Slin_0019 peptidase M16 domain protein; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: Peptidase M16 domain protein; hypothetical protein 5196364 10873041 Runsl_4494 Runella slithyformis DSM 19594 hypothetical protein YP_004657948.1 5195258 R 761193 CDS YP_004657949.1 338213894 10873042 5196561..5197799 1 NC_015703.1 PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16); COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase; HAMAP: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; InterPro IPR003526; KEGG: dfe:Dfer_2948 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; SPTR: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; peptidase M16 domain-containing protein 5197799 10873042 Runsl_4495 Runella slithyformis DSM 19594 peptidase M16 domain-containing protein YP_004657949.1 5196561 D 761193 CDS YP_004657950.1 338213895 10873043 5197871..5198350 1 NC_015703.1 PFAM: YgbB family; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; COGs: COG2159 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: dfe:Dfer_2949 amidohydrolase 2; PFAM: Amidohydrolase 2; SPTR: Amidohydrolase 2; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 5198350 10873043 Runsl_4496 Runella slithyformis DSM 19594 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase YP_004657950.1 5197871 D 761193 CDS YP_004657951.1 338213896 10873044 5198378..5199496 1 NC_015703.1 PFAM: Amidohydrolase; COGs: COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; InterPro IPR006218:IPR006269; KEGG: sli:Slin_2802 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-8-phosphooctulonate synthase; SPTR: 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; amidohydrolase 5199496 10873044 Runsl_4497 Runella slithyformis DSM 19594 amidohydrolase YP_004657951.1 5198378 D 761193 CDS YP_004657952.1 338213897 10873045 5199675..5200526 1 NC_015703.1 PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR003313:IPR000005; KEGG: cly:Celly_1434 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; AraC protein, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulatory protein, AraC-type; 2-dehydro-3-deoxyphosphooctonate aldolase 5200526 10873045 Runsl_4498 Runella slithyformis DSM 19594 2-dehydro-3-deoxyphosphooctonate aldolase YP_004657952.1 5199675 D 761193 CDS YP_004657953.1 338213898 10873046 complement(5200598..5201485) 1 NC_015703.1 PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: fjo:Fjoh_1731 hypothetical protein; SPTR: uncharacterized protein; AraC family transcriptional regulator 5201485 10873046 Runsl_4499 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004657953.1 5200598 R 761193 CDS YP_004657956.1 338213899 10873049 5203127..5204089 1 NC_015703.1 COGs: COG0290 Translation initiation factor 3 (IF-3); HAMAP: Translation initiation factor IF-3; InterPro IPR019814:IPR019815:IPR001288; KEGG: sli:Slin_2218 translation initiation factor IF-3; PFAM: Translation initiation factor 3, C-terminal; Translation initiation factor 3, N-terminal; SPTR: Translation initiation factor IF-3; TIGRFAM: Translation initiation factor 3; hypothetical protein 5204089 10873049 Runsl_4502 Runella slithyformis DSM 19594 hypothetical protein YP_004657956.1 5203127 D 761193 CDS YP_004657957.1 338213900 10873050 5204318..5204872 1 NC_015703.1 PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: sli:Slin_4002 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; translation initiation factor IF-3 5204872 10873050 Runsl_4503 Runella slithyformis DSM 19594 translation initiation factor IF-3 YP_004657957.1 5204318 D 761193 CDS YP_004657958.1 338213901 10873051 complement(5205148..5206494) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; KEGG: sli:Slin_1460 hypothetical protein; SPTR: uncharacterized protein; oxidoreductase domain-containing protein 5206494 10873051 Runsl_4504 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004657958.1 5205148 R 761193 CDS YP_004657959.1 338213902 10873052 complement(5206571..5207134) 1 NC_015703.1 KEGG: cpi:Cpin_0105 SMC domain protein; SPTR: SMC domain protein; hypothetical protein 5207134 10873052 Runsl_4505 Runella slithyformis DSM 19594 hypothetical protein YP_004657959.1 5206571 R 761193 CDS YP_004657960.1 338213903 10873053 5207194..5208804 1 NC_015703.1 InterPro IPR013658; KEGG: chu:CHU_3578 ATP/GTP-binding; PFAM: SMP-30/Gluconolaconase/LRE-like region; SPTR: uncharacterized protein; SMC domain-containing protein 5208804 10873053 Runsl_4506 Runella slithyformis DSM 19594 SMC domain-containing protein YP_004657960.1 5207194 D 761193 CDS YP_004657961.1 338213904 10873054 complement(5208834..5209688) 1 NC_015703.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; InterPro IPR010496; KEGG: dfe:Dfer_4384 protein of unknown function DUF1080; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; SMP-30/gluconolaconase/LRE-like region-containing protein 5209688 10873054 Runsl_4507 Runella slithyformis DSM 19594 SMP-30/gluconolaconase/LRE-like region-containing protein YP_004657961.1 5208834 R 761193 CDS YP_004657962.1 338213905 10873055 5209750..5210370 1 NC_015703.1 PFAM: Domain of Unknown Function (DUF1080); COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001:IPR001650:IPR011545; KEGG: chu:CHU_2570 ATP-dependent RNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Helicase-like:DEAD/DEAH box helicase-like; hypothetical protein 5210370 10873055 Runsl_4508 Runella slithyformis DSM 19594 hypothetical protein YP_004657962.1 5209750 D 761193 CDS YP_004657963.1 338213906 10873056 5210562..5211857 1 NC_015703.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; KEGG: dfe:Dfer_4566 Fur family transcriptional regulator protein; SPTR: Fur family transcriptional regulator protein; DEAD/DEAH box helicase 5211857 10873056 Runsl_4509 Runella slithyformis DSM 19594 DEAD/DEAH box helicase YP_004657963.1 5210562 D 761193 CDS YP_004657964.1 338213907 10873057 complement(5211926..5212342) 1 NC_015703.1 PFAM: Ferric uptake regulator family; COGs: COG0521 Molybdopterin biosynthesis protein; InterPro IPR001453:IPR020817; KEGG: sli:Slin_5694 molybdenum cofactor synthesis protein; PFAM: Molybdopterin binding; SPTR: Molybdenum cofactor biosynthesis protein Mog; TIGRFAM: Molybdenum cofactor synthesis; Fur family transcriptional regulator 5212342 10873057 Runsl_4510 Runella slithyformis DSM 19594 Fur family transcriptional regulator YP_004657964.1 5211926 R 761193 CDS YP_004657965.1 338213908 10873058 5212500..5213024 1 NC_015703.1 PFAM: Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor synthesis domain; COGs: COG2942 N-acyl-D-glucosamine 2-epimerase; InterPro IPR010819; KEGG: sli:Slin_6381 N-acylglucosamine 2-epimerase; PFAM: N-acylglucosamine 2-epimerase; SPTR: N-acylglucosamine 2-epimerase; molybdenum cofactor synthesis domain-containing protein 5213024 10873058 Runsl_4511 Runella slithyformis DSM 19594 molybdenum cofactor synthesis domain-containing protein YP_004657965.1 5212500 D 761193 CDS YP_004657966.1 338213909 10873059 5213184..5214455 1 NC_015703.1 PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); N-acylglucosamine 2-epimerase 5214455 10873059 Runsl_4512 Runella slithyformis DSM 19594 N-acylglucosamine 2-epimerase YP_004657966.1 5213184 D 761193 CDS YP_004657967.1 338213910 10873060 5214521..5215171 1 NC_015703.1 SPTR: uncharacterized protein; hypothetical protein 5215171 10873060 Runsl_4513 Runella slithyformis DSM 19594 hypothetical protein YP_004657967.1 5214521 D 761193 CDS YP_004657968.1 338213911 10873061 complement(5215500..5216324) 1 NC_015703.1 COGs: COG1278 Cold shock protein; InterPro IPR011129:IPR002059; KEGG: chu:CHU_2346 cold-shock DNA-binding protein family protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding domain protein; hypothetical protein 5216324 10873061 Runsl_4514 Runella slithyformis DSM 19594 hypothetical protein YP_004657968.1 5215500 R 761193 CDS YP_004657969.1 338213912 10873062 5216454..5216645 1 NC_015703.1 PFAM: 'Cold-shock' DNA-binding domain; COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: dfe:Dfer_2563 ApbE family lipoprotein; PFAM: ApbE-like lipoprotein; SPTR: ApbE family lipoprotein; cold-shock DNA-binding domain-containing protein 5216645 10873062 Runsl_4515 Runella slithyformis DSM 19594 cold-shock DNA-binding domain-containing protein YP_004657969.1 5216454 D 761193 CDS YP_004657970.1 338213913 10873063 complement(5216747..5217766) 1 NC_015703.1 PFAM: ApbE family; COGs: COG1045 Serine acetyltransferase; InterPro IPR001451; KEGG: sli:Slin_1590 serine O-acetyltransferase; PFAM: Bacterial transferase hexapeptide repeat; PRIAM: Serine O-acetyltransferase; SPTR: Serine O-acetyltransferase; ApbE family lipoprotein 5217766 10873063 Runsl_4516 Runella slithyformis DSM 19594 ApbE family lipoprotein YP_004657970.1 5216747 R 761193 CDS YP_004657971.1 338213914 10873064 5218008..5218835 1 NC_015703.1 TIGRFAM: serine O-acetyltransferase; InterPro IPR001647; KEGG: dfe:Dfer_0242 transcriptional regulator, TetR family; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; Serine O-acetyltransferase 5218835 10873064 Runsl_4517 Runella slithyformis DSM 19594 Serine O-acetyltransferase YP_004657971.1 5218008 D 761193 CDS YP_004657972.1 338213915 10873065 complement(5218948..5219544) 1 NC_015703.1 PFAM: Bacterial regulatory proteins, tetR family; COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: cpi:Cpin_6901 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Peroxiredoxin; TetR family transcriptional regulator 5219544 10873065 Runsl_4518 Runella slithyformis DSM 19594 TetR family transcriptional regulator YP_004657972.1 5218948 R 761193 CDS YP_004657973.1 338213916 10873066 complement(5219722..5220189) 1 NC_015703.1 PFAM: AhpC/TSA family; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: sli:Slin_1583 ROK family protein; PFAM: ROK; SPTR: ROK family protein; alkyl hydroperoxide reductase 5220189 10873066 Runsl_4519 Runella slithyformis DSM 19594 alkyl hydroperoxide reductase YP_004657973.1 5219722 R 761193 CDS YP_004657974.1 338213917 10873067 5220386..5221312 1 NC_015703.1 PFAM: ROK family; COGs: COG2947 conserved hypothetical protein; InterPro IPR002740; KEGG: psn:Pedsa_1869 protein of unknown function DUF55; PFAM: Uncharacterised protein family UPF0310; SPTR: Protein of hypothetical function DUF55; ROK family protein 5221312 10873067 Runsl_4520 Runella slithyformis DSM 19594 ROK family protein YP_004657974.1 5220386 D 761193 CDS YP_004657975.1 338213918 10873068 5221389..5221805 1 NC_015703.1 PFAM: Protein of unknown function DUF55; KEGG: dfe:Dfer_1218 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5221805 10873068 Runsl_4521 Runella slithyformis DSM 19594 hypothetical protein YP_004657975.1 5221389 D 761193 CDS YP_004657976.1 338213919 10873069 5221792..5223462 1 NC_015703.1 COGs: COG1092 SAM-dependent methyltransferase; KEGG: sli:Slin_2221 SAM dependent methyltransferase; SPTR: SAM dependent methyltransferase; hypothetical protein 5223462 10873069 Runsl_4522 Runella slithyformis DSM 19594 hypothetical protein YP_004657976.1 5221792 D 761193 CDS YP_004657977.1 338213920 10873070 5223525..5224406 1 NC_015703.1 PFAM: S-adenosylmethionine-dependent methyltransferase; InterPro IPR019734:IPR001440; KEGG: sli:Slin_2220 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; SAM dependent methyltransferase 5224406 10873070 Runsl_4523 Runella slithyformis DSM 19594 SAM dependent methyltransferase YP_004657977.1 5223525 D 761193 CDS YP_004657978.1 338213921 10873071 5224487..5225704 1 NC_015703.1 COGs: COG0441 Threonyl-tRNA synthetase; InterProIPR004095:IPR012947:IPR002314:IPR004154:IPR 002320; KEGG: sli:Slin_2219 threonyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding; SPTR: Threonyl-tRNA synthetase; TIGRFAM: Threonyl-tRNA synthetase, class IIa; hypothetical protein 5225704 10873071 Runsl_4524 Runella slithyformis DSM 19594 hypothetical protein YP_004657978.1 5224487 D 761193 CDS YP_004657979.1 338213922 10873072 5225816..5227768 1 NC_015703.1 PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TGS domain; TIGRFAM: threonyl-tRNA synthetase; COGs: COG0337 3-dehydroquinate synthetase; HAMAP: 3-dehydroquinate synthase; InterPro IPR002658:IPR016037; KEGG: dfe:Dfer_3640 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase AroB; PRIAM: 3-dehydroquinate synthase; SPTR: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; threonyl-tRNA synthetase 5227768 10873072 Runsl_4525 Runella slithyformis DSM 19594 threonyl-tRNA synthetase YP_004657979.1 5225816 D 761193 CDS YP_004657980.1 338213923 10873073 5227941..5228969 1 NC_015703.1 PFAM: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; KEGG: dfe:Dfer_3639 lipoprotein; SPTR: Lipoprotein; 3-dehydroquinate synthase 5228969 10873073 Runsl_4526 Runella slithyformis DSM 19594 3-dehydroquinate synthase YP_004657980.1 5227941 D 761193 CDS YP_004657981.1 338213924 10873074 5229071..5229640 1 NC_015703.1 InterPro IPR020818; KEGG: sli:Slin_1082 chaperonin Cpn10; PFAM: Chaperonin Cpn10; SPTR: Chaperonin Cpn10; lipoprotein 5229640 10873074 Runsl_4527 Runella slithyformis DSM 19594 lipoprotein YP_004657981.1 5229071 D 761193 CDS YP_004657982.1 338213925 10873075 complement(5229750..5230130) 1 NC_015703.1 PFAM: Chaperonin 10 Kd subunit; InterPro IPR019734:IPR001440; KEGG: sli:Slin_1363 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; chaperonin Cpn10 5230130 10873075 Runsl_4528 Runella slithyformis DSM 19594 chaperonin Cpn10 YP_004657982.1 5229750 R 761193 CDS YP_004657983.1 338213926 10873076 complement(5230212..5230718) 1 NC_015703.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: chu:CHU_1408 acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA oxidase/dehydrogenase, type 1; PRIAM: Glutaryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase; hypothetical protein 5230718 10873076 Runsl_4529 Runella slithyformis DSM 19594 hypothetical protein YP_004657983.1 5230212 R 761193 CDS YP_004657984.1 338213927 10873077 5230927..5232114 1 NC_015703.1 PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: fbc:FB2170_00720 dolichyl-phosphate-mannose-protein mannosyltransferase; PFAM: Glycosyl transferase, family 39; SPTR: Dolichyl-phosphate-mannose-protein mannosyltransferase; glutaryl-CoA dehydrogenase 5232114 10873077 Runsl_4530 Runella slithyformis DSM 19594 glutaryl-CoA dehydrogenase YP_004657984.1 5230927 D 761193 CDS YP_004657985.1 338213928 10873078 5232186..5233847 1 NC_015703.1 KEGG: phe:Phep_0720 hypothetical protein; SPTR: uncharacterized protein; glycosyl transferase family protein 5233847 10873078 Runsl_4531 Runella slithyformis DSM 19594 glycosyl transferase family protein YP_004657985.1 5232186 D 761193 CDS YP_004657986.1 338213929 10873079 5234494..5234961 1 NC_015703.1 KEGG: dfe:Dfer_3153 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5234961 10873079 Runsl_4532 Runella slithyformis DSM 19594 hypothetical protein YP_004657986.1 5234494 D 761193 CDS YP_004657987.1 338213930 10873080 5235065..5235796 1 NC_015703.1 COGs: COG1197 Transcription-repair coupling factor (superfamily II helicase); InterProIPR014001:IPR001650:IPR003711:IPR011545:IPR 005118:IPR004576; KEGG: dfe:Dfer_3695 transcription-repair coupling factor; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Transcription factor CarD; DNA/RNA helicase, C-terminal; Transcription-repair-coupling factor; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Transcription-repair coupling factor; TIGRFAM: Transcription-repair coupling factor; hypothetical protein 5235796 10873080 Runsl_4533 Runella slithyformis DSM 19594 hypothetical protein YP_004657987.1 5235065 D 761193 CDS YP_004657988.1 338213931 10873081 5235974..5239336 1 NC_015703.1 PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd); transcription-repair coupling factor 5239336 10873081 Runsl_4534 Runella slithyformis DSM 19594 transcription-repair coupling factor YP_004657988.1 5235974 D 761193 CDS YP_004657989.1 338213932 10873082 5239453..5239635 1 NC_015703.1 KEGG: sli:Slin_6323 lipoprotein; SPTR: lipoprotein; hypothetical protein 5239635 10873082 Runsl_4535 Runella slithyformis DSM 19594 hypothetical protein YP_004657989.1 5239453 D 761193 CDS YP_004657990.1 338213933 10873083 complement(5239826..5240371) 1 NC_015703.1 KEGG: sli:Slin_3385 hypothetical protein; SPTR: uncharacterized protein; lipoprotein 5240371 10873083 Runsl_4536 Runella slithyformis DSM 19594 lipoprotein YP_004657990.1 5239826 R 761193 CDS YP_004657991.1 338213934 10873084 complement(5240494..5241285) 1 NC_015703.1 KEGG: sli:Slin_5712 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5241285 10873084 Runsl_4537 Runella slithyformis DSM 19594 hypothetical protein YP_004657991.1 5240494 R 761193 CDS YP_004657992.1 338213935 10873085 5241521..5242042 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 5242042 10873085 Runsl_4538 Runella slithyformis DSM 19594 hypothetical protein YP_004657992.1 5241521 D 761193 CDS YP_004657993.1 338213936 10873087 5243012..5243230 1 NC_015703.1 COGs: COG4632 Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase; InterPro IPR018711; KEGG: phe:Phep_0002 hypothetical protein; PFAM: Protein of unknown function DUF2233, periplasmic; SPTR: uncharacterized protein; hypothetical protein 5243230 10873087 Runsl_4540 Runella slithyformis DSM 19594 hypothetical protein YP_004657993.1 5243012 D 761193 CDS YP_004657994.1 338213937 10873088 complement(5243265..5244143) 1 NC_015703.1 PFAM: Predicted periplasmic protein (DUF2233); KEGG: dfe:Dfer_5769 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5244143 10873088 Runsl_4541 Runella slithyformis DSM 19594 hypothetical protein YP_004657994.1 5243265 R 761193 CDS YP_004657995.1 338213938 10873089 5244306..5244875 1 NC_015703.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: sli:Slin_0656 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; hypothetical protein 5244875 10873089 Runsl_4542 Runella slithyformis DSM 19594 hypothetical protein YP_004657995.1 5244306 D 761193 CDS YP_004657996.1 338213939 10873090 5245358..5246131 1 NC_015703.1 PFAM: alpha/beta hydrolase fold; InterPro IPR002123; KEGG: dfe:Dfer_4159 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; alpha/beta hydrolase 5246131 10873090 Runsl_4543 Runella slithyformis DSM 19594 alpha/beta hydrolase YP_004657996.1 5245358 D 761193 CDS YP_004657997.1 338213940 10873091 5246271..5247095 1 NC_015703.1 PFAM: Acyltransferase; KEGG: sli:Slin_6034 hypothetical protein; SPTR: uncharacterized protein; phospholipid/glycerol acyltransferase 5247095 10873091 Runsl_4544 Runella slithyformis DSM 19594 phospholipid/glycerol acyltransferase YP_004657997.1 5246271 D 761193 CDS YP_004657998.1 338213941 10873092 complement(5247115..5247678) 1 NC_015703.1 COGs: COG0696 Phosphoglyceromutase; HAMAP: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; InterPro IPR011258:IPR006124:IPR005995; KEGG: dfe:Dfer_4375 phosphoglyceromutase; PFAM: BPG-independent PGAM, N-terminal; Metalloenzyme; PRIAM: Phosphoglycerate mutase; SPTR: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; TIGRFAM: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; hypothetical protein 5247678 10873092 Runsl_4545 Runella slithyformis DSM 19594 hypothetical protein YP_004657998.1 5247115 R 761193 CDS YP_004657999.1 338213942 10873093 complement(5247748..5249286) 1 NC_015703.1 PFAM: Metalloenzyme superfamily; BPG-independent PGAM N-terminus (iPGM_N); TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: sli:Slin_5030 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; PRIAM: Acid phosphatase; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: Protein tyrosine phosphatase; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 5249286 10873093 Runsl_4546 Runella slithyformis DSM 19594 2,3-bisphosphoglycerate-independent phosphoglycerate mutase YP_004657999.1 5247748 R 761193 CDS YP_004658000.1 338213943 10873094 complement(5249303..5249794) 1 NC_015703.1 PFAM: Low molecular weight phosphotyrosine protein phosphatase; KEGG: sli:Slin_5031 hypothetical protein; SPTR: uncharacterized protein; protein tyrosine phosphatase 5249794 10873094 Runsl_4547 Runella slithyformis DSM 19594 protein tyrosine phosphatase YP_004658000.1 5249303 R 761193 CDS YP_004658001.1 338213944 10873095 complement(5249941..5250255) 1 NC_015703.1 COGs: COG0148 Enolase; HAMAP: Enolase; InterPro IPR020811:IPR020810:IPR000941; KEGG: dfe:Dfer_4373 enolase; PFAM: Enolase, C-terminal; Enolase, N-terminal; PRIAM: Phosphopyruvate hydratase; SPTR: Enolase; TIGRFAM: Enolase; hypothetical protein 5250255 10873095 Runsl_4548 Runella slithyformis DSM 19594 hypothetical protein YP_004658001.1 5249941 R 761193 CDS YP_004658002.1 338213945 10873096 complement(5250327..5251604) 1 NC_015703.1 PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: dfe:Dfer_3140 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: LL-diaminopimelate aminotransferase; SPTR: Aminotransferase class I and II; enolase 5251604 10873096 Runsl_4549 Runella slithyformis DSM 19594 enolase YP_004658002.1 5250327 R 761193 CDS YP_004658003.1 338213946 10873097 complement(5251942..5253096) 1 NC_015703.1 PFAM: Aminotransferase class I and II; InterPro IPR008915; KEGG: sli:Slin_2710 peptidase M50; PFAM: Peptidase M50; SPTR: Peptidase M50; LL-diaminopimelate aminotransferase 5253096 10873097 Runsl_4550 Runella slithyformis DSM 19594 LL-diaminopimelate aminotransferase YP_004658003.1 5251942 R 761193 CDS YP_004658004.1 338213947 10873098 complement(5253173..5254330) 1 NC_015703.1 PFAM: Peptidase M50; COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834:IPR006402:IPR006439; KEGG: dfe:Dfer_5618 HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; peptidase M50 5254330 10873098 Runsl_4551 Runella slithyformis DSM 19594 peptidase M50 YP_004658004.1 5253173 R 761193 CDS YP_004658005.1 338213948 10873099 complement(5254367..5254987) 1 NC_015703.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; Epoxide hydrolase N-terminal domain-like phosphatase; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; COGs: COG0825 Acetyl-CoA carboxylase alpha subunit; HAMAP: Acetyl-CoA carboxylase, alpha subunit; InterPro IPR020582:IPR001095; KEGG: sli:Slin_2715 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region; PRIAM: Acetyl-CoA carboxylase; SPTR: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: Acetyl-CoA carboxylase, alpha subunit; HAD superfamily hydrolase 5254987 10873099 Runsl_4552 Runella slithyformis DSM 19594 HAD superfamily hydrolase YP_004658005.1 5254367 R 761193 CDS YP_004658006.1 338213949 10873100 complement(5255063..5256016) 1 NC_015703.1 PFAM: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR011108; KEGG: sli:Slin_2716 beta-lactamase; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: Beta-lactamase domain protein; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 5256016 10873100 Runsl_4553 Runella slithyformis DSM 19594 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha YP_004658006.1 5255063 R 761193 CDS YP_004658007.1 338213950 10873101 complement(5256025..5257467) 1 NC_015703.1 PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain; COGs: COG1522 Transcriptional regulators; InterPro IPR019888:IPR019887; KEGG: dfe:Dfer_5148 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type; SPTR: Transcriptional regulator, AsnC family; RNA-metabolising metallo-beta-lactamase 5257467 10873101 Runsl_4554 Runella slithyformis DSM 19594 RNA-metabolising metallo-beta-lactamase YP_004658007.1 5256025 R 761193 CDS YP_004658008.1 338213951 10873102 complement(5257652..5258200) 1 NC_015703.1 PFAM: AsnC family; manually curated; AsnC family transcriptional regulator 5258200 10873102 Runsl_4555 Runella slithyformis DSM 19594 AsnC family transcriptional regulator YP_004658008.1 5257652 R 761193 CDS YP_004658009.1 338213952 10873104 complement(5260325..5260714) 1 NC_015703.1 hypothetical protein 5260714 10873104 Runsl_4557 Runella slithyformis DSM 19594 hypothetical protein YP_004658009.1 5260325 R 761193 CDS YP_004658010.1 338213953 10873105 complement(5260969..5261244) 1 NC_015703.1 hypothetical protein 5261244 10873105 Runsl_4558 Runella slithyformis DSM 19594 hypothetical protein YP_004658010.1 5260969 R 761193 CDS YP_004658011.1 338213954 10873107 5262021..5263196 1 NC_015703.1 PFAM: Galactokinase galactose-binding signature; GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: galactokinase; COGs: COG0578 Glycerol-3-phosphate dehydrogenase; InterPro IPR006076; KEGG: dfe:Dfer_2005 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; PRIAM: Glycerol-3-phosphate dehydrogenase; SPTR: FAD dependent oxidoreductase; galactokinase 5263196 10873107 Runsl_4559 Runella slithyformis DSM 19594 galactokinase YP_004658011.1 5262021 D 761193 CDS YP_004658012.1 338213955 10873108 5263267..5264919 1 NC_015703.1 PFAM: FAD dependent oxidoreductase; COGs: COG0393 conserved hypothetical protein; HAMAP: UPF0145 protein ybjQ; InterPro IPR002765; KEGG: sli:Slin_0329 hypothetical protein; PFAM: Uncharacterised protein family UPF0145; SPTR: UPF0145 protein Slin_0329; glycerol-3-phosphate dehydrogenase 5264919 10873108 Runsl_4560 Runella slithyformis DSM 19594 glycerol-3-phosphate dehydrogenase YP_004658012.1 5263267 D 761193 CDS YP_004658013.1 338213956 10873109 5265130..5265465 1 NC_015703.1 PFAM: Domain of unknown function (DUF74); COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; KEGG: dfe:Dfer_4675 phosphoribosyltransferase; SPTR: Phosphoribosyltransferase; hypothetical protein 5265465 10873109 Runsl_4561 Runella slithyformis DSM 19594 hypothetical protein YP_004658013.1 5265130 D 761193 CDS YP_004658014.1 338213957 10873110 complement(5265516..5266013) 1 NC_015703.1 PFAM: Phosphoribosyl transferase domain; KEGG: sli:Slin_6183 hypothetical protein; SPTR: uncharacterized protein; manually curated; phosphoribosyltransferase 5266013 10873110 Runsl_4562 Runella slithyformis DSM 19594 phosphoribosyltransferase YP_004658014.1 5265516 R 761193 CDS YP_004658015.1 338213958 10873111 5266112..5266531 1 NC_015703.1 KEGG: sli:Slin_1183 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5266531 10873111 Runsl_4563 Runella slithyformis DSM 19594 hypothetical protein YP_004658015.1 5266112 D 761193 CDS YP_004658016.1 338213959 10873112 complement(5266610..5267506) 1 NC_015703.1 COGs: COG2515 1-aminocyclopropane-1-carboxylate deaminase; KEGG: sli:Slin_1391 pyridoxal-5'-phosphate-dependent protein subunit beta; SPTR: Pyridoxal-5'-phosphate-dependent protein beta subunit; hypothetical protein 5267506 10873112 Runsl_4564 Runella slithyformis DSM 19594 hypothetical protein YP_004658016.1 5266610 R 761193 CDS YP_004658017.1 338213960 10873113 5267523..5268416 1 NC_015703.1 PFAM: Pyridoxal-phosphate dependent enzyme; KEGG: sli:Slin_2301 hypothetical protein; SPTR: uncharacterized protein; manually curated; pyridoxal-5'-phosphate-dependent protein subunit beta 5268416 10873113 Runsl_4565 Runella slithyformis DSM 19594 pyridoxal-5'-phosphate-dependent protein subunit beta YP_004658017.1 5267523 D 761193 CDS YP_004658018.1 338213961 10873114 complement(5268472..5269011) 1 NC_015703.1 COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR000845:IPR011268:IPR011270; KEGG: sli:Slin_3943 purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: Nucleoside phosphorylase; PRIAM: Purine-nucleoside phosphorylase; SPTR: Purine nucleoside phosphorylase I, inosine and guanosine-specific; TIGRFAM: Purine nucleoside phosphorylase I, inosine/guanosine-specific; Inosine guanosine/xanthosine phosphorylase; hypothetical protein 5269011 10873114 Runsl_4566 Runella slithyformis DSM 19594 hypothetical protein YP_004658018.1 5268472 R 761193 CDS YP_004658019.1 338213962 10873115 complement(5269247..5270086) 1 NC_015703.1 PFAM: Phosphorylase superfamily; TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase; KEGG: dfe:Dfer_0226 hypothetical protein; SPTR: uncharacterized protein; purine nucleoside phosphorylase I 5270086 10873115 Runsl_4567 Runella slithyformis DSM 19594 purine nucleoside phosphorylase I YP_004658019.1 5269247 R 761193 CDS YP_004658020.1 338213963 10873116 complement(5270181..5271443) 1 NC_015703.1 PFAM: 3-carboxy-cis,cis-muconate lactonizing enzyme; HAMAP: Ribosomal protein S20; InterPro IPR002583; KEGG: dfe:Dfer_0225 30S ribosomal protein S20; PFAM: Ribosomal protein S20; SPTR: 30S ribosomal protein S20; TIGRFAM: Ribosomal protein S20; hypothetical protein 5271443 10873116 Runsl_4568 Runella slithyformis DSM 19594 hypothetical protein YP_004658020.1 5270181 R 761193 CDS YP_004658021.1 338213964 10873117 complement(5271561..5271824) 1 NC_015703.1 PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20; COGs: COG4105 DNA uptake lipoprotein; InterPro IPR019734:IPR001440; KEGG: sli:Slin_2038 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; 30S ribosomal protein S20 5271824 10873117 Runsl_4569 Runella slithyformis DSM 19594 30S ribosomal protein S20 YP_004658021.1 5271561 R 761193 CDS YP_004658022.1 338213965 10873118 5272193..5275210 1 NC_015703.1 KEGG: dfe:Dfer_1051 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5275210 10873118 Runsl_4570 Runella slithyformis DSM 19594 hypothetical protein YP_004658022.1 5272193 D 761193 CDS YP_004658023.1 338213966 10873119 5275265..5276923 1 NC_015703.1 PFAM: TonB dependent receptor; InterPro IPR007730; KEGG: sli:Slin_2040 sporulation domain protein; PFAM: Sporulation/cell division region, bacteria; SPTR: Sporulation domain protein; hypothetical protein 5276923 10873119 Runsl_4571 Runella slithyformis DSM 19594 hypothetical protein YP_004658023.1 5275265 D 761193 CDS YP_004658024.1 338213967 10873120 5277082..5278203 1 NC_015703.1 KEGG: sli:Slin_1995 hypothetical protein; SPTR: uncharacterized protein; sporulation domain-containing protein 5278203 10873120 Runsl_4572 Runella slithyformis DSM 19594 sporulation domain-containing protein YP_004658024.1 5277082 D 761193 CDS YP_004658025.1 338213968 10873121 5278318..5279244 1 NC_015703.1 COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR013221:IPR004101:IPR001645; KEGG: psn:Pedsa_1924 FolC bifunctional protein; PFAM: Mur ligase, central; Mur ligase, C-terminal; PRIAM: Tetrahydrofolate synthase; SPTR: FolC bifunctional protein; TIGRFAM: Folylpolyglutamate synthetase; hypothetical protein 5279244 10873121 Runsl_4573 Runella slithyformis DSM 19594 hypothetical protein YP_004658025.1 5278318 D 761193 CDS YP_004658026.1 338213969 10873122 5279341..5280639 1 NC_015703.1 PFAM: Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase; COGs: COG0220 S-adenosylmethionine-dependent methyltransferase; HAMAP: tRNA (guanine-N(7)-)-methyltransferase; InterPro IPR003358; KEGG: sli:Slin_1997 tRNA (guanine-N(7)-)-methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase; PRIAM: tRNA (guanine-N(7)-)-methyltransferase; SPTR: tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N-7) methyltransferase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 5280639 10873122 Runsl_4574 Runella slithyformis DSM 19594 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_004658026.1 5279341 D 761193 CDS YP_004658027.1 338213970 10873123 5280683..5281339 1 NC_015703.1 PFAM: methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterPro IPR020828:IPR020829:IPR006424; KEGG: cpi:Cpin_1397 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: Glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; tRNA (guanine-N(7)-)-methyltransferase 5281339 10873123 Runsl_4575 Runella slithyformis DSM 19594 tRNA (guanine-N(7)-)-methyltransferase YP_004658027.1 5280683 D 761193 CDS YP_004658028.1 338213971 10873124 complement(5281538..5282551) 1 NC_015703.1 PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; COGs: COG2171 Tetrahydrodipicolinate N-succinyltransferase; InterPro IPR001451; KEGG: dfe:Dfer_1045 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; PRIAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; SPTR:2,3,4,5-tetrahydropyridine-2,6-dicarboxylateN- succinyltransferase; glyceraldehyde-3-phosphate dehydrogenase, type I 5282551 10873124 Runsl_4576 Runella slithyformis DSM 19594 glyceraldehyde-3-phosphate dehydrogenase, type I YP_004658028.1 5281538 R 761193 CDS YP_004658029.1 338213972 10873125 5283195..5284007 1 NC_015703.1 TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: sli:Slin_2000 XRE family transcriptional regulator; SPTR: Transcriptional regulator, XRE family; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 5284007 10873125 Runsl_4577 Runella slithyformis DSM 19594 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_004658029.1 5283195 D 761193 CDS YP_004658030.1 338213973 10873126 5284501..5285061 1 NC_015703.1 PFAM: Helix-turn-helix; hypothetical protein 5285061 10873126 Runsl_4578 Runella slithyformis DSM 19594 hypothetical protein YP_004658030.1 5284501 D 761193 CDS YP_004658031.1 338213974 10873127 complement(5285777..5286403) 1 NC_015703.1 InterPro IPR019734:IPR001440; KEGG: sli:Slin_2001 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: TPR repeat-containing protein; hypothetical protein 5286403 10873127 Runsl_4579 Runella slithyformis DSM 19594 hypothetical protein YP_004658031.1 5285777 R 761193 CDS YP_004658032.1 338213975 10873128 complement(5286599..5288038) 1 NC_015703.1 COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR002205:IPR006691:IPR005743; KEGG: dfe:Dfer_1029 DNA gyrase, A subunit; PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit A or C-terminal; SPTR: DNA gyrase, A subunit; TIGRFAM: DNA gyrase, subunit A; hypothetical protein 5288038 10873128 Runsl_4580 Runella slithyformis DSM 19594 hypothetical protein YP_004658032.1 5286599 R 761193 CDS YP_004658033.1 338213976 10873129 complement(5288196..5290718) 1 NC_015703.1 PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: DNA gyrase, A subunit; DNA gyrase subunit A 5290718 10873129 Runsl_4581 Runella slithyformis DSM 19594 DNA gyrase subunit A YP_004658033.1 5288196 R 761193 CDS YP_004658034.1 338213977 10873130 complement(5290776..5291003) 1 NC_015703.1 hypothetical protein 5291003 10873130 Runsl_4582 Runella slithyformis DSM 19594 hypothetical protein YP_004658034.1 5290776 R 761193 CDS YP_004658035.1 338213978 10873133 complement(5291420..5293297) 1 NC_015703.1 PFAM: Domain of Unknown Function (DUF349); COGs: COG0259 Pyridoxamine-phosphate oxidase; HAMAP: Pyridoxamine 5'-phosphate oxidase; InterPro IPR011576:IPR019576:IPR000659; KEGG: sli:Slin_2893 pyridoxamine 5'-phosphate oxidase; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal; PRIAM: Pyridoxal 5'-phosphate synthase; SPTR: Pyridoxine/pyridoxamine 5'-phosphate oxidase; TIGRFAM: Pyridoxamine 5'-phosphate oxidase; hypothetical protein 5293297 10873133 Runsl_4583 Runella slithyformis DSM 19594 hypothetical protein YP_004658035.1 5291420 R 761193 CDS YP_004658036.1 338213979 10873134 5293384..5294028 1 NC_015703.1 PFAM: Pyridoxamine 5'-phosphate oxidase; Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; TIGRFAM: pyridoxamine-phosphate oxidase; InterPro IPR002790:IPR002059; KEGG: cch:Cag_1985 cold shock protein; PFAM: Protein of unknown function DUF88; Cold-shock protein, DNA-binding; SPTR: Cold shock protein; pyridoxine/pyridoxamine 5'-phosphate oxidase 5294028 10873134 Runsl_4584 Runella slithyformis DSM 19594 pyridoxine/pyridoxamine 5'-phosphate oxidase YP_004658036.1 5293384 D 761193 CDS YP_004658037.1 338213980 10873135 5294165..5295109 1 NC_015703.1 PFAM: 'Cold-shock' DNA-binding domain; Protein of unknown function DUF88; COGs: COG2942 N-acyl-D-glucosamine 2-epimerase; InterPro IPR010819; KEGG: dfe:Dfer_1975 N-acylglucosamine 2-epimerase; PFAM: N-acylglucosamine 2-epimerase; SPTR: N-acylglucosamine 2-epimerase; hypothetical protein 5295109 10873135 Runsl_4585 Runella slithyformis DSM 19594 hypothetical protein YP_004658037.1 5294165 D 761193 CDS YP_004658038.1 338213981 10873136 complement(5295151..5296323) 1 NC_015703.1 PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); KEGG: dfe:Dfer_0200 hypothetical protein; SPTR: uncharacterized protein; N-acylglucosamine 2-epimerase 5296323 10873136 Runsl_4586 Runella slithyformis DSM 19594 N-acylglucosamine 2-epimerase YP_004658038.1 5295151 R 761193 CDS YP_004658039.1 338213982 10873137 complement(5296400..5297473) 1 NC_015703.1 PFAM: S1/P1 Nuclease; InterPro IPR013097; KEGG: sli:Slin_0525 stress responsive alpha-beta barrel domain protein; PFAM: Stress responsive alpha-beta barrel; SPTR: Stress responsive alpha-beta barrel domain protein; hypothetical protein 5297473 10873137 Runsl_4587 Runella slithyformis DSM 19594 hypothetical protein YP_004658039.1 5296400 R 761193 CDS YP_004658040.1 338213983 10873138 5297781..5298179 1 NC_015703.1 PFAM: Stress responsive A/B Barrel Domain; InterPro IPR018764; KEGG: sli:Slin_3072 anti-sigma-K factor RskA; PFAM: Anti-sigma K factor RskA; SPTR: Anti-sigma-K factor RskA; stress responsive alpha-beta barrel domain-containing protein 5298179 10873138 Runsl_4588 Runella slithyformis DSM 19594 stress responsive alpha-beta barrel domain-containing protein YP_004658040.1 5297781 D 761193 CDS YP_004658041.1 338213984 10873139 complement(5298249..5299046) 1 NC_015703.1 PFAM: Anti-sigma-K factor rskA; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_3071 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; anti-sigma-K factor RskA 5299046 10873139 Runsl_4589 Runella slithyformis DSM 19594 anti-sigma-K factor RskA YP_004658041.1 5298249 R 761193 CDS YP_004658042.1 338213985 10873140 complement(5299043..5299582) 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1092 SAM-dependent methyltransferase; InterPro IPR002478; KEGG: sli:Slin_0528 methyltransferase; SMART: Pseudouridine synthase/archaeosine transglycosylase; SPTR: Methyltransferase; ECF subfamily RNA polymerase sigma-24 subunit 5299582 10873140 Runsl_4590 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004658042.1 5299043 R 761193 CDS YP_004658043.1 338213986 10873141 complement(5299782..5300972) 1 NC_015703.1 PFAM: S-adenosylmethionine-dependent methyltransferase; KEGG: sli:Slin_2007 HPr kinase; SPTR: HPr kinase; PUA domain-containing protein 5300972 10873141 Runsl_4591 Runella slithyformis DSM 19594 PUA domain-containing protein YP_004658043.1 5299782 R 761193 CDS YP_004658044.1 338213987 10873142 complement(5300982..5301872) 1 NC_015703.1 PFAM: HPr Serine kinase C-terminal domain; hypothetical protein 5301872 10873142 Runsl_4592 Runella slithyformis DSM 19594 hypothetical protein YP_004658044.1 5300982 R 761193 CDS YP_004658045.1 338213988 10873143 complement(5301859..5302011) 1 NC_015703.1 COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR000583:IPR001962; KEGG: srm:SRM_00271 asparagine synthetase B (glutamine-hydrolyzing); PFAM: Asparagine synthase; Glutamine amidotransferase, class-II; PRIAM: Asparagine synthase (glutamine-hydrolyzing); SPTR: Asparagine synthetase B (Glutamine-hydrolyzing); hypothetical protein 5302011 10873143 Runsl_4593 Runella slithyformis DSM 19594 hypothetical protein YP_004658045.1 5301859 R 761193 CDS YP_004658046.1 338213989 10873144 complement(5302615..5304684) 1 NC_015703.1 PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307:IPR006311; KEGG: sli:Slin_0527 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; asparagine synthase 5304684 10873144 Runsl_4594 Runella slithyformis DSM 19594 asparagine synthase YP_004658046.1 5302615 R 761193 CDS YP_004658047.1 338213990 10873145 5304791..5305627 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG2949 Uncharacterized membrane protein; InterPro IPR003848; KEGG: sli:Slin_2226 hypothetical protein; PFAM: Protein of unknown function DUF218; SPTR: uncharacterized protein; xylose isomerase domain-containing protein 5305627 10873145 Runsl_4595 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004658047.1 5304791 D 761193 CDS YP_004658048.1 338213991 10873146 complement(5305802..5306515) 1 NC_015703.1 PFAM: DUF218 domain; COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR002205; KEGG: sli:Slin_2227 DNA topoisomerase (ATP-hydrolyzing); PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit A or C-terminal; SPTR: DNA topoisomerase (ATP-hydrolyzing); hypothetical protein 5306515 10873146 Runsl_4596 Runella slithyformis DSM 19594 hypothetical protein YP_004658048.1 5305802 R 761193 CDS YP_004658049.1 338213992 10873147 complement(5306524..5309250) 1 NC_015703.1 PFAM: DNA gyrase/topoisomerase IV, subunit A; COGs: COG0408 Coproporphyrinogen III oxidase; InterPro IPR001260; KEGG: sli:Slin_2294 coproporphyrinogen oxidase; PFAM: Coproporphyrinogen III oxidase; PRIAM: Coproporphyrinogen oxidase; SPTR: Coproporphyrinogen oxidase; DNA topoisomerase 5309250 10873147 Runsl_4597 Runella slithyformis DSM 19594 DNA topoisomerase YP_004658049.1 5306524 R 761193 CDS YP_004658050.1 338213993 10873148 complement(5309298..5310179) 1 NC_015703.1 PFAM: Coproporphyrinogen III oxidase; COGs: COG4123 O-methyltransferase; InterPro IPR007848; KEGG: sli:Slin_2411 methyltransferase small; PFAM: Methyltransferase small; SPTR: Methyltransferase small; coproporphyrinogen oxidase 5310179 10873148 Runsl_4598 Runella slithyformis DSM 19594 coproporphyrinogen oxidase YP_004658050.1 5309298 R 761193 CDS YP_004658051.1 338213994 10873149 complement(5310210..5311022) 1 NC_015703.1 PFAM: Methyltransferase small domain; COGs: COG3341 double-stranded RNA/RNA-DNA hybrid binding protein; KEGG: dfe:Dfer_5118 ribonuclease H-related protein; SPTR: Ribonuclease H-related protein; methyltransferase small 5311022 10873149 Runsl_4599 Runella slithyformis DSM 19594 methyltransferase small YP_004658051.1 5310210 R 761193 CDS YP_004658052.1 338213995 10873150 complement(5311024..5311656) 1 NC_015703.1 PFAM: RNase H; Caulimovirus viroplasmin; KEGG: dfe:Dfer_5678 hypothetical protein; SPTR: uncharacterized protein; ribonuclease H-like protein 5311656 10873150 Runsl_4600 Runella slithyformis DSM 19594 ribonuclease H-like protein YP_004658052.1 5311024 R 761193 CDS YP_004658053.1 338213996 10873151 5311780..5312811 1 NC_015703.1 hypothetical protein 5312811 10873151 Runsl_4601 Runella slithyformis DSM 19594 hypothetical protein YP_004658053.1 5311780 D 761193 CDS YP_004658054.1 338213997 10873152 complement(5313202..5313336) 1 NC_015703.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: dfe:Dfer_2513 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; hypothetical protein 5313336 10873152 Runsl_4602 Runella slithyformis DSM 19594 hypothetical protein YP_004658054.1 5313202 R 761193 CDS YP_004658055.1 338213998 10873153 5313457..5313912 1 NC_015703.1 PFAM: Response regulator receiver domain; COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); HAMAP: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; InterPro IPR003699; KEGG: dfe:Dfer_3300 queuosine biosynthesis protein; PFAM: Queuosine biosynthesis protein; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 2; response regulator receiver protein 5313912 10873153 Runsl_4603 Runella slithyformis DSM 19594 response regulator receiver protein YP_004658055.1 5313457 D 761193 CDS YP_004658056.1 338213999 10873154 complement(5313909..5315180) 1 NC_015703.1 PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; KEGG: dfe:Dfer_3301 hypothetical protein; SPTR: uncharacterized protein; S-adenosylmethionine:tRNAribosyltransferase- isomerase 5315180 10873154 Runsl_4604 Runella slithyformis DSM 19594 S-adenosylmethionine:tRNAribosyltransferase- isomerase YP_004658056.1 5313909 R 761193 CDS YP_004658057.1 338214000 10873155 complement(5315199..5315708) 1 NC_015703.1 COGs: COG1530 Ribonuclease G and E; InterPro IPR003029:IPR019307:IPR004659; KEGG: dfe:Dfer_4433 ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain; SPTR: Ribonuclease, Rne/Rng family; TIGRFAM: Ribonuclease E/G; hypothetical protein 5315708 10873155 Runsl_4605 Runella slithyformis DSM 19594 hypothetical protein YP_004658057.1 5315199 R 761193 CDS YP_004658058.1 338214001 10873156 complement(5315802..5317361) 1 NC_015703.1 PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family; KEGG: pgn:PGN_1392 hypothetical protein; SPTR: uncharacterized protein; manually curated; ribonuclease, Rne/Rng family 5317361 10873156 Runsl_4606 Runella slithyformis DSM 19594 ribonuclease, Rne/Rng family YP_004658058.1 5315802 R 761193 CDS YP_004658059.1 338214002 10873157 complement(5317501..5317590) 1 NC_015703.1 KEGG: sli:Slin_5981 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5317590 10873157 Runsl_4607 Runella slithyformis DSM 19594 hypothetical protein YP_004658059.1 5317501 R 761193 CDS YP_004658060.1 338214003 10873158 complement(5317674..5318522) 1 NC_015703.1 COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: sli:Slin_5982 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; SPTR: Histone family protein DNA-binding protein; hypothetical protein 5318522 10873158 Runsl_4608 Runella slithyformis DSM 19594 hypothetical protein YP_004658060.1 5317674 R 761193 CDS YP_004658061.1 338214004 10873159 complement(5318563..5318847) 1 NC_015703.1 PFAM: Bacterial DNA-binding protein; COGs: COG1194 A/G-specific DNA glycosylase; InterPro IPR003265:IPR003651:IPR005760; KEGG: sli:Slin_5983 A/G-specific adenine glycosylase; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; SMART: HhH-GPD domain; SPTR: A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; histone family protein DNA-binding protein 5318847 10873159 Runsl_4609 Runella slithyformis DSM 19594 histone family protein DNA-binding protein YP_004658061.1 5318563 R 761193 CDS YP_004658062.1 338214005 10873160 5319021..5320082 1 NC_015703.1 PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: A/G-specific adenine glycosylase; A/G-specific adenine glycosylase 5320082 10873160 Runsl_4610 Runella slithyformis DSM 19594 A/G-specific adenine glycosylase YP_004658062.1 5319021 D 761193 CDS YP_004658063.1 338214006 10873161 complement(5319999..5320178) 1 NC_015703.1 COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424:IPR011344; KEGG: dfe:Dfer_4439 single-strand binding protein; PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; hypothetical protein 5320178 10873161 Runsl_4611 Runella slithyformis DSM 19594 hypothetical protein YP_004658063.1 5319999 R 761193 CDS YP_004658064.1 338214007 10873162 5320228..5320704 1 NC_015703.1 PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb); InterPro IPR004360; KEGG: psl:Psta_2414 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; single-strand binding protein 5320704 10873162 Runsl_4612 Runella slithyformis DSM 19594 single-strand binding protein YP_004658064.1 5320228 D 761193 CDS YP_004658065.1 338214008 10873163 5320940..5321323 1 NC_015703.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; HAMAP: Peptide methionine sulfoxide reductase msrB; InterPro IPR002579; KEGG: tel:tlr1214 methionine sulfoxide reductase B; PFAM: Methionine sulphoxide reductase B; PRIAM: Peptide-methionine (R)-S-oxide reductase; SPTR: Peptide methionine sulfoxide reductase MsrB; TIGRFAM: Methionine sulphoxide reductase B; Glyoxalase/bleomycin resistance protein/dioxygenase 5321323 10873163 Runsl_4613 Runella slithyformis DSM 19594 Glyoxalase/bleomycin resistance protein/dioxygenase YP_004658065.1 5320940 D 761193 CDS YP_004658066.1 338214009 10873164 complement(5321340..5321816) 1 NC_015703.1 PFAM: SelR domain; TIGRFAM: methionine-R-sulfoxide reductase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: ana:alr4456 tropinone reductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Tropinone reductase I; SPTR: Alr4456 protein; peptide methionine sulfoxide reductase 5321816 10873164 Runsl_4614 Runella slithyformis DSM 19594 peptide methionine sulfoxide reductase YP_004658066.1 5321340 R 761193 CDS YP_004658067.1 338214010 10873165 5321890..5322654 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG0738 Fucose permease; InterPro IPR011701:IPR005964; KEGG: dfe:Dfer_0466 glucose/galactose transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Glucose/galactose transporter; TIGRFAM: Bacterial glucose/galactose transporter; Tropinone reductase I 5322654 10873165 Runsl_4615 Runella slithyformis DSM 19594 Tropinone reductase I YP_004658067.1 5321890 D 761193 CDS YP_004658068.1 338214011 10873166 5322759..5323979 1 NC_015703.1 PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter; COGs: COG0153 Galactokinase; InterPro IPR006204:IPR013750; KEGG: dfe:Dfer_0465 GHMP kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal; SPTR: GHMP kinase; glucose/galactose transporter 5323979 10873166 Runsl_4616 Runella slithyformis DSM 19594 glucose/galactose transporter YP_004658068.1 5322759 D 761193 CDS YP_004658069.1 338214012 10873167 5324002..5325132 1 NC_015703.1 PFAM: Galactokinase galactose-binding signature; GHMP kinases C terminal; GHMP kinases N terminal domain; GHMP kinase 5325132 10873167 Runsl_4617 Runella slithyformis DSM 19594 GHMP kinase YP_004658069.1 5324002 D 761193 CDS YP_004658070.1 338214013 10873168 complement(5325327..5325485) 1 NC_015703.1 COGs: COG3424 naringenin-chalcone synthase; InterPro IPR001099:IPR012328; KEGG: sli:Slin_2532 chalcone and stilbene synthase domain protein; PFAM: Chalcone/stilbene synthase, N-terminal; Chalcone/stilbene synthase, C-terminal; PRIAM: Naringenin-chalcone synthase; SPTR: Naringenin-chalcone synthase; hypothetical protein 5325485 10873168 Runsl_4618 Runella slithyformis DSM 19594 hypothetical protein YP_004658070.1 5325327 R 761193 CDS YP_004658071.1 338214014 10873169 5325654..5326769 1 NC_015703.1 PFAM: Chalcone and stilbene synthases, N-terminal domain; Chalcone and stilbene synthases, C-terminal domain; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: bth:BT_2184 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; Naringenin-chalcone synthase 5326769 10873169 Runsl_4619 Runella slithyformis DSM 19594 Naringenin-chalcone synthase YP_004658071.1 5325654 D 761193 CDS YP_004658072.1 338214015 10873170 5326890..5327396 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; ECF subfamily RNA polymerase sigma-24 subunit 5327396 10873170 Runsl_4620 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004658072.1 5326890 D 761193 CDS YP_004658073.1 338214016 10873171 5327393..5327590 1 NC_015703.1 COGs: COG0682 Prolipoprotein diacylglyceryltransferase; HAMAP: Prolipoprotein diacylglyceryl transferase; InterPro IPR001640; KEGG: dfe:Dfer_4316 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; SPTR: Prolipoprotein diacylglyceryl transferase; TIGRFAM: Prolipoprotein diacylglyceryl transferase; hypothetical protein 5327590 10873171 Runsl_4621 Runella slithyformis DSM 19594 hypothetical protein YP_004658073.1 5327393 D 761193 CDS YP_004658074.1 338214017 10873172 5327611..5328474 1 NC_015703.1 PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; InterPro IPR003675; KEGG: cps:CPS_2226 CAAX amino terminal protease; PFAM: Abortive infection protein; SPTR: CAAX amino terminal protease; prolipoprotein diacylglyceryl transferase 5328474 10873172 Runsl_4622 Runella slithyformis DSM 19594 prolipoprotein diacylglyceryl transferase YP_004658074.1 5327611 D 761193 CDS YP_004658075.1 338214018 10873173 5328542..5329711 1 NC_015703.1 PFAM: CAAX amino terminal protease; COGs: COG1501 Alpha-glucosidase 31 of glycosyl hydrolase; InterPro IPR000322; KEGG: ngr:NAEGRDRAFT_70656 hypothetical protein; PFAM: Glycoside hydrolase, family 31; SPTR: uncharacterized protein; abortive infection protein 5329711 10873173 Runsl_4623 Runella slithyformis DSM 19594 abortive infection protein YP_004658075.1 5328542 D 761193 CDS YP_004658076.1 338214019 10873174 5329790..5331550 1 NC_015703.1 PFAM: Glycosyl hydrolases family 31; COGs: COG0025 NhaP-type Na+/H+ and K+/H+ antiporter; InterPro IPR006153:IPR004705; KEGG: dfe:Dfer_2874 Na+/H+ antiporter; PFAM: Cation/H+ exchanger; SPTR: Na+/H+ antiporter; TIGRFAM: Na+/H+ exchanger, yjcE-like, bacteria; glycoside hydrolase 5331550 10873174 Runsl_4624 Runella slithyformis DSM 19594 glycoside hydrolase YP_004658076.1 5329790 D 761193 CDS YP_004658077.1 338214020 10873175 complement(5331561..5333153) 1 NC_015703.1 PFAM: Sodium/hydrogen exchanger family; TIGRFAM: Na+/H+ antiporter, bacterial form; KEGG: psn:Pedsa_1428 hypothetical protein; SPTR: uncharacterized protein; Na+/H+ antiporter 5333153 10873175 Runsl_4625 Runella slithyformis DSM 19594 Na+/H+ antiporter YP_004658077.1 5331561 R 761193 CDS YP_004658078.1 338214021 10873176 5333456..5333575 1 NC_015703.1 KEGG: sli:Slin_1923 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5333575 10873176 Runsl_4626 Runella slithyformis DSM 19594 hypothetical protein YP_004658078.1 5333456 D 761193 CDS YP_004658079.1 338214022 10873177 5333786..5334421 1 NC_015703.1 COGs: COG0661 unusual protein kinase; InterPro IPR004147; KEGG: sli:Slin_1924 ABC transporter; PFAM: ABC-1; SPTR: ABC-1 domain protein; hypothetical protein 5334421 10873177 Runsl_4627 Runella slithyformis DSM 19594 hypothetical protein YP_004658079.1 5333786 D 761193 CDS YP_004658080.1 338214023 10873178 5334482..5335816 1 NC_015703.1 PFAM: Phosphotransferase enzyme family; ABC1 family; KEGG: sli:Slin_6335 hypothetical protein; SPTR: uncharacterized protein; ABC transporter 5335816 10873178 Runsl_4628 Runella slithyformis DSM 19594 ABC transporter YP_004658080.1 5334482 D 761193 CDS YP_004658081.1 338214024 10873179 complement(5335957..5337471) 1 NC_015703.1 KEGG: dfe:Dfer_0028 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5337471 10873179 Runsl_4629 Runella slithyformis DSM 19594 hypothetical protein YP_004658081.1 5335957 R 761193 CDS YP_004658082.1 338214025 10873180 complement(5337520..5339181) 1 NC_015703.1 KEGG: dfe:Dfer_0029 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5339181 10873180 Runsl_4630 Runella slithyformis DSM 19594 hypothetical protein YP_004658082.1 5337520 R 761193 CDS YP_004658083.1 338214026 10873181 5339323..5339769 1 NC_015703.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: sli:Slin_2250 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; hypothetical protein 5339769 10873181 Runsl_4631 Runella slithyformis DSM 19594 hypothetical protein YP_004658083.1 5339323 D 761193 CDS YP_004658084.1 338214027 10873182 5339777..5340655 1 NC_015703.1 PFAM: alpha/beta hydrolase fold; KEGG: lby:Lbys_3413 glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; alpha/beta hydrolase 5340655 10873182 Runsl_4632 Runella slithyformis DSM 19594 alpha/beta hydrolase YP_004658084.1 5339777 D 761193 CDS YP_004658085.1 338214028 10873183 complement(5340683..5341735) 1 NC_015703.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG3537 alpha-1 2-mannosidase; InterPro IPR012939:IPR005887; KEGG: dfe:Dfer_4742 alpha-1,2-mannosidase; PFAM: Glycosyl hydrolase 92; SPTR: Alpha-1,2-mannosidase; TIGRFAM: Alpha-1,2-mannosidase; glyoxalase/bleomycin resistance protein/dioxygenase 5341735 10873183 Runsl_4633 Runella slithyformis DSM 19594 glyoxalase/bleomycin resistance protein/dioxygenase YP_004658085.1 5340683 R 761193 CDS YP_004658086.1 338214029 10873184 complement(5341816..5344101) 1 NC_015703.1 PFAM: Glycosyl hydrolase 92; TIGRFAM: alpha-1,2-mannosidase; alpha-1,2-mannosidase 5344101 10873184 Runsl_4634 Runella slithyformis DSM 19594 alpha-1,2-mannosidase YP_004658086.1 5341816 R 761193 CDS YP_004658087.1 338214030 10873185 complement(5344148..5344378) 1 NC_015703.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: lby:Lbys_2868 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; hypothetical protein 5344378 10873185 Runsl_4635 Runella slithyformis DSM 19594 hypothetical protein YP_004658087.1 5344148 R 761193 CDS YP_004658088.1 338214031 10873186 complement(5344512..5345231) 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: cpi:Cpin_5597 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; LytTR family two component transcriptional regulator 5345231 10873186 Runsl_4636 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004658088.1 5344512 R 761193 CDS YP_004658089.1 338214032 10873187 complement(5345277..5346356) 1 NC_015703.1 PFAM: Histidine kinase; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119; KEGG: cpi:Cpin_6511 LysR family transcriptional regulator; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; SPTR: Transcriptional regulator, LysR family; signal transduction histidine kinase 5346356 10873187 Runsl_4637 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004658089.1 5345277 R 761193 CDS YP_004658090.1 338214033 10873188 complement(5346543..5347481) 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; COGs: COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; InterPro IPR004839; KEGG: glo:Glov_2977 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Cystathionine beta-lyase; SPTR: Aminotransferase class I and II; LysR family transcriptional regulator 5347481 10873188 Runsl_4638 Runella slithyformis DSM 19594 LysR family transcriptional regulator YP_004658090.1 5346543 R 761193 CDS YP_004658091.1 338214034 10873189 complement(5347649..5348779) 1 NC_015703.1 PFAM: Aminotransferase class I and II; COGs: COG0439 Biotin carboxylase; KEGG: dfe:Dfer_2846 ATP-dependent carboxylate-amine ligase domain-containing protein; SPTR: ATP-dependent carboxylate-amine ligase domain-containing protein; cystathionine beta-lyase 5348779 10873189 Runsl_4639 Runella slithyformis DSM 19594 cystathionine beta-lyase YP_004658091.1 5347649 R 761193 CDS YP_004658092.1 338214035 10873190 complement(5348830..5350038) 1 NC_015703.1 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dfe:Dfer_2833 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; ATP-dependent carboxylate-amine ligase domain-containing protein 5350038 10873190 Runsl_4640 Runella slithyformis DSM 19594 ATP-dependent carboxylate-amine ligase domain-containing protein YP_004658092.1 5348830 R 761193 CDS YP_004658093.1 338214036 10873191 5350206..5351426 1 NC_015703.1 PFAM: Predicted permease; InterPro IPR019854; KEGG: dfe:Dfer_0458 motility-like protein; SPTR: Motility-like protein; TIGRFAM: Gliding motility-associated protein, GldC; hypothetical protein 5351426 10873191 Runsl_4641 Runella slithyformis DSM 19594 hypothetical protein YP_004658093.1 5350206 D 761193 CDS YP_004658094.1 338214037 10873192 5351588..5351938 1 NC_015703.1 TIGRFAM: gliding motility-associated protein GldC; COGs: COG0002 Acetylglutamate semialdehyde dehydrogenase; HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase; InterPro IPR000534:IPR012280:IPR000706; KEGG: dfe:Dfer_4422 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding; Semialdehyde dehydrogenase, dimerisation region; PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase; SPTR: N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; gliding motility-associated protein GldC 5351938 10873192 Runsl_4642 Runella slithyformis DSM 19594 gliding motility-associated protein GldC YP_004658094.1 5351588 D 761193 CDS YP_004658095.1 338214038 10873193 5352001..5352978 1 NC_015703.1 PFAM: Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, common form; N-acetyl-gamma-glutamyl-phosphate reductase 5352978 10873193 Runsl_4643 Runella slithyformis DSM 19594 N-acetyl-gamma-glutamyl-phosphate reductase YP_004658095.1 5352001 D 761193 CDS YP_004658096.1 338214039 10873194 5353012..5354109 1 NC_015703.1 KEGG: rbi:RB2501_08740 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5354109 10873194 Runsl_4644 Runella slithyformis DSM 19594 hypothetical protein YP_004658096.1 5353012 D 761193 CDS YP_004658097.1 338214040 10873195 complement(5354115..5355122) 1 NC_015703.1 KEGG: sli:Slin_4954 TonB-dependent receptor plug; SPTR: uncharacterized protein; hypothetical protein 5355122 10873195 Runsl_4645 Runella slithyformis DSM 19594 hypothetical protein YP_004658097.1 5354115 R 761193 CDS YP_004658098.1 338214041 10873196 complement(5355127..5355795) 1 NC_015703.1 PFAM: PEGA domain; COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR009042:IPR007627:IPR007624:IPR007630:IPR 014284; KEGG: sli:Slin_1987 RNA polymerase, sigma 70 subunit, RpoD subfamily; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 3; SPTR: RNA polymerase, sigma 70 subunit, RpoD subfamily; TIGRFAM: RNA polymerase sigma-70; TonB-dependent receptor plug 5355795 10873196 Runsl_4646 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004658098.1 5355127 R 761193 CDS YP_004658099.1 338214042 10873197 complement(5356052..5356915) 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); HAMAP: Polyribonucleotide nucleotidyltransferase; InterProIPR012162:IPR001247:IPR015847:IPR015848:IPR 018111:IPR003029:IPR004087; KEGG: sli:Slin_1986 polyribonucleotide nucleotidyltransferase; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; Ribosomal protein S1, RNA binding domain; PRIAM: Polyribonucleotide nucleotidyltransferase; SPTR: Polyribonucleotide nucleotidyltransferase; TIGRFAM: Polyribonucleotide nucleotidyltransferase; RpoD subfamily RNA polymerase sigma-70 subunit 5356915 10873197 Runsl_4647 Runella slithyformis DSM 19594 RpoD subfamily RNA polymerase sigma-70 subunit YP_004658099.1 5356052 R 761193 CDS YP_004658100.1 338214043 10873198 complement(5357116..5359347) 1 NC_015703.1 PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease, domain 1; Polyribonucleotide nucleotidyltransferase, RNA binding domain; 3' exoribonuclease, domain 2; TIGRFAM: polyribonucleotide nucleotidyltransferase; COGs: COG0184 Ribosomal protein S15P/S13E; InterPro IPR000589:IPR005290; KEGG: chu:CHU_1787 30S ribosomal protein S15; PFAM: Ribosomal protein S15; SPTR: 30S ribosomal protein S15; TIGRFAM: Ribosomal protein S15, bacterial-type; polyribonucleotide nucleotidyltransferase 5359347 10873198 Runsl_4648 Runella slithyformis DSM 19594 polyribonucleotide nucleotidyltransferase YP_004658100.1 5357116 R 761193 CDS YP_004658101.1 338214044 10873199 complement(5359577..5359846) 1 NC_015703.1 PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle; COGs: COG0795 permease; InterPro IPR005495; KEGG: sli:Slin_1984 permease YjgP/YjgQ family protein; PFAM: Permease YjgP/YjgQ, predicted; SPTR: Permease YjgP/YjgQ family protein; 30S ribosomal protein S15 5359846 10873199 Runsl_4649 Runella slithyformis DSM 19594 30S ribosomal protein S15 YP_004658101.1 5359577 R 761193 CDS YP_004658102.1 338214045 10873200 complement(5359910..5361415) 1 NC_015703.1 PFAM: Predicted permease YjgP/YjgQ family; KEGG: sli:Slin_1983 hypothetical protein; SPTR: uncharacterized protein; YjgP/YjgQ family permease 5361415 10873200 Runsl_4650 Runella slithyformis DSM 19594 YjgP/YjgQ family permease YP_004658102.1 5359910 R 761193 CDS YP_004658103.1 338214046 10873201 complement(5361426..5361818) 1 NC_015703.1 hypothetical protein 5361818 10873201 Runsl_4651 Runella slithyformis DSM 19594 hypothetical protein YP_004658103.1 5361426 R 761193 CDS YP_004658104.1 338214047 10873204 complement(5362640..5363986) 1 NC_015703.1 KEGG: dfe:Dfer_1283 conserved hypothetical signal peptide protein; SPTR: Conserved hypothetical signal peptide protein; hypothetical protein 5363986 10873204 Runsl_4653 Runella slithyformis DSM 19594 hypothetical protein YP_004658104.1 5362640 R 761193 CDS YP_004658105.1 338214048 10873205 complement(5364115..5364831) 1 NC_015703.1 COGs: COG0159 Tryptophan synthase alpha chain; HAMAP: Tryptophan synthase, alpha chain; InterPro IPR002028; KEGG: dfe:Dfer_3798 tryptophan synthase, alpha subunit; PFAM: Tryptophan synthase, alpha chain; PRIAM: Tryptophan synthase; SPTR: Tryptophan synthase alpha chain; TIGRFAM: Tryptophan synthase, alpha chain; hypothetical protein 5364831 10873205 Runsl_4654 Runella slithyformis DSM 19594 hypothetical protein YP_004658105.1 5364115 R 761193 CDS YP_004658106.1 338214049 10873206 complement(5364946..5365725) 1 NC_015703.1 PFAM: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit; COGs: COG0242 N-formylmethionyl-tRNA deformylase; HAMAP: Formylmethionine deformylase; InterPro IPR000181; KEGG: sli:Slin_1786 formylmethionine deformylase; PFAM: Formylmethionine deformylase; SPTR: Peptide deformylase 1; tryptophan synthase subunit alpha 5365725 10873206 Runsl_4655 Runella slithyformis DSM 19594 tryptophan synthase subunit alpha YP_004658106.1 5364946 R 761193 CDS YP_004658107.1 338214050 10873207 complement(5365863..5366345) 1 NC_015703.1 PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase; InterPro IPR003088:IPR013428:IPR013427; KEGG: dfe:Dfer_3707 membrane-bound dehydrogenase domain protein; PFAM: Cytochrome c, class I; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; haem-binding region; peptide deformylase 5366345 10873207 Runsl_4656 Runella slithyformis DSM 19594 peptide deformylase YP_004658107.1 5365863 R 761193 CDS YP_004658108.1 338214051 10873208 5366601..5369492 1 NC_015703.1 PFAM: Cytochrome c; TIGRFAM: membrane-bound dehydrogenase domain; heme-binding domain, Pirellula/Verrucomicrobium type; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: sli:Slin_1107 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; membrane-bound dehydrogenase domain-containing protein 5369492 10873208 Runsl_4657 Runella slithyformis DSM 19594 membrane-bound dehydrogenase domain-containing protein YP_004658108.1 5366601 D 761193 CDS YP_004658109.1 338214052 10873209 complement(5369577..5370638) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: chu:CHU_1703 ferric uptake regulator protein; PFAM: Ferric-uptake regulator; SPTR: Ferric uptake regulator protein; oxidoreductase domain-containing protein 5370638 10873209 Runsl_4658 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004658109.1 5369577 R 761193 CDS YP_004658110.1 338214053 10873210 complement(5370900..5371379) 1 NC_015703.1 PFAM: Ferric uptake regulator family; Fur family ferric uptake regulator 5371379 10873210 Runsl_4659 Runella slithyformis DSM 19594 Fur family ferric uptake regulator YP_004658110.1 5370900 R 761193 CDS YP_004658111.1 338214054 10873211 complement(5371655..5371897) 1 NC_015703.1 COGs: COG0369 Sulfite reductase alpha subunit (flavoprotein); InterPro IPR005625:IPR008254:IPR001433; KEGG: fjo:Fjoh_4069 flavodoxin/nitric oxide synthase; PFAM: Flavodoxin/nitric oxide synthase; PepSY-associated TM helix; Oxidoreductase FAD/NAD(P)-binding; SPTR: Oxidoreductase; hypothetical protein 5371897 10873211 Runsl_4660 Runella slithyformis DSM 19594 hypothetical protein YP_004658111.1 5371655 R 761193 CDS YP_004658112.1 338214055 10873212 complement(5372323..5374425) 1 NC_015703.1 PFAM: Flavodoxin; Oxidoreductase NAD-binding domain; PepSY-associated TM helix; KEGG: coc:Coch_1987 hypothetical protein; SPTR: uncharacterized protein; flavodoxin/nitric oxide synthase 5374425 10873212 Runsl_4661 Runella slithyformis DSM 19594 flavodoxin/nitric oxide synthase YP_004658112.1 5372323 R 761193 CDS YP_004658113.1 338214056 10873213 complement(5374431..5374925) 1 NC_015703.1 PFAM: Predicted periplasmic protein (DUF2271); InterPro IPR002110; KEGG: cly:Celly_2236 hypothetical protein; PFAM: Ankyrin repeat; SPTR: uncharacterized protein; hypothetical protein 5374925 10873213 Runsl_4662 Runella slithyformis DSM 19594 hypothetical protein YP_004658113.1 5374431 R 761193 CDS YP_004658114.1 338214057 10873214 complement(5374934..5376421) 1 NC_015703.1 PFAM: Ankyrin repeat; COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: zpr:ZPR_0955 thiamine biosynthesis lipoprotein; PFAM: ApbE-like lipoprotein; SPTR: Thiamine biosynthesis lipoprotein; ankyrin 5376421 10873214 Runsl_4663 Runella slithyformis DSM 19594 ankyrin YP_004658114.1 5374934 R 761193 CDS YP_004658115.1 338214058 10873215 complement(5376443..5377441) 1 NC_015703.1 PFAM: ApbE family; KEGG: fjo:Fjoh_4072 hypothetical protein; SPTR: Hypothetical lipoprotein; ApbE family lipoprotein 5377441 10873215 Runsl_4664 Runella slithyformis DSM 19594 ApbE family lipoprotein YP_004658115.1 5376443 R 761193 CDS YP_004658116.1 338214059 10873216 complement(5377586..5378614) 1 NC_015703.1 KEGG: dfe:Dfer_4310 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5378614 10873216 Runsl_4665 Runella slithyformis DSM 19594 hypothetical protein YP_004658116.1 5377586 R 761193 CDS YP_004658117.1 338214060 10873217 complement(5378756..5380888) 1 NC_015703.1 COGs: COG3182 Uncharacterized iron-regulated membrane protein; InterPro IPR005625; KEGG: dfe:Dfer_4666 propeptide PepSY amd peptidase M4; SPTR: iron-regulated transmembrane protein; hypothetical protein 5380888 10873217 Runsl_4666 Runella slithyformis DSM 19594 hypothetical protein YP_004658117.1 5378756 R 761193 CDS YP_004658118.1 338214061 10873218 complement(5381214..5382398) 1 NC_015703.1 KEGG: cly:Celly_1197 hypothetical protein; SPTR: secreted protein; propeptide PepSY amd peptidase M4 5382398 10873218 Runsl_4667 Runella slithyformis DSM 19594 propeptide PepSY amd peptidase M4 YP_004658118.1 5381214 R 761193 CDS YP_004658119.1 338214062 10873219 complement(5382441..5383355) 1 NC_015703.1 COGs: COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid; InterPro IPR012910:IPR000531:IPR010105; KEGG: sli:Slin_5755 TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; hypothetical protein 5383355 10873219 Runsl_4668 Runella slithyformis DSM 19594 hypothetical protein YP_004658119.1 5382441 R 761193 CDS YP_004658120.1 338214063 10873220 complement(5383403..5385739) 1 NC_015703.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: lby:Lbys_1540 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; TonB-dependent siderophore receptor 5385739 10873220 Runsl_4669 Runella slithyformis DSM 19594 TonB-dependent siderophore receptor YP_004658120.1 5383403 R 761193 CDS YP_004658121.1 338214064 10873221 5386454..5388412 1 NC_015703.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; KEGG: lby:Lbys_1541 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor 5388412 10873221 Runsl_4670 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004658121.1 5386454 D 761193 CDS YP_004658122.1 338214065 10873222 5388402..5389499 1 NC_015703.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat; KEGG: sli:Slin_1320 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5389499 10873222 Runsl_4671 Runella slithyformis DSM 19594 hypothetical protein YP_004658122.1 5388402 D 761193 CDS YP_004658123.1 338214066 10873223 complement(5389583..5391271) 1 NC_015703.1 COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362:IPR017475; KEGG: shg:Sph21_1796 undecaprenyl-phosphate glucose phosphotransferase; PFAM: Bacterial sugar transferase; SPTR: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; hypothetical protein 5391271 10873223 Runsl_4672 Runella slithyformis DSM 19594 hypothetical protein YP_004658123.1 5389583 R 761193 CDS YP_004658124.1 338214067 10873224 complement(5391478..5392899) 1 NC_015703.1 PFAM: Bacterial sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: sli:Slin_6414 hypothetical protein; SPTR: uncharacterized protein; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 5392899 10873224 Runsl_4673 Runella slithyformis DSM 19594 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase YP_004658124.1 5391478 R 761193 CDS YP_004658125.1 338214068 10873225 complement(5393433..5396195) 1 NC_015703.1 KEGG: sli:Slin_6415 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5396195 10873225 Runsl_4674 Runella slithyformis DSM 19594 hypothetical protein YP_004658125.1 5393433 R 761193 CDS YP_004658126.1 338214069 10873226 complement(5396192..5396956) 1 NC_015703.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: geo:Geob_2923 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucuronate 4-epimerase; SPTR: NAD-dependent epimerase/dehydratase; hypothetical protein 5396956 10873226 Runsl_4675 Runella slithyformis DSM 19594 hypothetical protein YP_004658126.1 5396192 R 761193 CDS YP_004658127.1 338214070 10873227 complement(5397159..5398112) 1 NC_015703.1 PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: cts:Ctha_1806 family 2 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; UDP-glucuronate 4-epimerase 5398112 10873227 Runsl_4676 Runella slithyformis DSM 19594 UDP-glucuronate 4-epimerase YP_004658127.1 5397159 R 761193 CDS YP_004658128.1 338214071 10873228 complement(5398307..5399281) 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; KEGG: sli:Slin_6418 glycosyl transferase 39; SPTR: Glycosyl transferase 39; family 2 glycosyl transferase 5399281 10873228 Runsl_4677 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004658128.1 5398307 R 761193 CDS YP_004658129.1 338214072 10873229 complement(5399459..5401057) 1 NC_015703.1 KEGG: sli:Slin_4562 hypothetical protein; SPTR: uncharacterized protein; glycosyl transferase family protein 5401057 10873229 Runsl_4678 Runella slithyformis DSM 19594 glycosyl transferase family protein YP_004658129.1 5399459 R 761193 CDS YP_004658130.1 338214073 10873230 complement(5401291..5402943) 1 NC_015703.1 KEGG: sli:Slin_4563 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5402943 10873230 Runsl_4679 Runella slithyformis DSM 19594 hypothetical protein YP_004658130.1 5401291 R 761193 CDS YP_004658131.1 338214074 10873231 complement(5403041..5403763) 1 NC_015703.1 InterPro IPR018550; KEGG: sli:Slin_6416 hypothetical protein; PFAM: Lipid A 3-O-deacylase-related; SPTR: uncharacterized protein; hypothetical protein 5403763 10873231 Runsl_4680 Runella slithyformis DSM 19594 hypothetical protein YP_004658131.1 5403041 R 761193 CDS YP_004658132.1 338214075 10873232 complement(5403932..5405065) 1 NC_015703.1 PFAM: Lipid A 3-O-deacylase (PagL); KEGG: sli:Slin_6417 hypothetical protein; SPTR: uncharacterized protein; lipid A 3-O-deacylase-like protein 5405065 10873232 Runsl_4681 Runella slithyformis DSM 19594 lipid A 3-O-deacylase-like protein YP_004658132.1 5403932 R 761193 CDS YP_004658133.1 338214076 10873233 5405342..5406826 1 NC_015703.1 COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR005913; KEGG: dfe:Dfer_0045 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; PRIAM: dTDP-4-dehydrorhamnose reductase; SPTR: dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; hypothetical protein 5406826 10873233 Runsl_4682 Runella slithyformis DSM 19594 hypothetical protein YP_004658133.1 5405342 D 761193 CDS YP_004658134.1 338214077 10873234 complement(5406823..5407686) 1 NC_015703.1 PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase; COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005835:IPR005907; KEGG: lby:Lbys_1314 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Glucose-1-phosphate thymidylyltransferase; SPTR: Glucose-1-phosphate thymidylyltransferase; TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; dTDP-4-dehydrorhamnose reductase 5407686 10873234 Runsl_4683 Runella slithyformis DSM 19594 dTDP-4-dehydrorhamnose reductase YP_004658134.1 5406823 R 761193 CDS YP_004658135.1 338214078 10873235 complement(5407935..5408795) 1 NC_015703.1 PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form; COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR001509:IPR005888; KEGG: sli:Slin_5840 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: dTDP-glucose 4,6-dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; glucose-1-phosphate thymidylyltransferase 5408795 10873235 Runsl_4684 Runella slithyformis DSM 19594 glucose-1-phosphate thymidylyltransferase YP_004658135.1 5407935 R 761193 CDS YP_004658136.1 338214079 10873236 complement(5408894..5409952) 1 NC_015703.1 PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: dfe:Dfer_2965 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-glucose 4,6-dehydratase 5409952 10873236 Runsl_4685 Runella slithyformis DSM 19594 dTDP-glucose 4,6-dehydratase YP_004658136.1 5408894 R 761193 CDS YP_004658137.1 338214080 10873237 complement(5409991..5410542) 1 NC_015703.1 PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; KEGG: nmu:Nmul_A0257 hypothetical protein; SPTR: uncharacterized protein; dTDP-4-dehydrorhamnose 3,5-epimerase 5410542 10873237 Runsl_4686 Runella slithyformis DSM 19594 dTDP-4-dehydrorhamnose 3,5-epimerase YP_004658137.1 5409991 R 761193 CDS YP_004658138.1 338214081 10873238 complement(5410583..5411440) 1 NC_015703.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: nmu:Nmul_A0256 oxidoreductase-like; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein; hypothetical protein 5411440 10873238 Runsl_4687 Runella slithyformis DSM 19594 hypothetical protein YP_004658138.1 5410583 R 761193 CDS YP_004658139.1 338214082 10873239 complement(5411452..5412468) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; InterPro IPR015393:IPR001296; KEGG: sli:Slin_3145 hypothetical protein; PFAM: Protein of unknown function DUF1972; Glycosyl transferase, group 1; SPTR: uncharacterized protein; oxidoreductase domain-containing protein 5412468 10873239 Runsl_4688 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004658139.1 5411452 R 761193 CDS YP_004658140.1 338214083 10873240 complement(5412476..5413552) 1 NC_015703.1 PFAM: Glycosyl transferases group 1; Domain of unknown function (DUF1972); COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: shl:Shal_1496 group 1 glycosyl transferase; PFAM: Glycosyl transferase, group 1; SPTR: uncharacterized protein; hypothetical protein 5413552 10873240 Runsl_4689 Runella slithyformis DSM 19594 hypothetical protein YP_004658140.1 5412476 R 761193 CDS YP_004658141.1 338214084 10873241 complement(5413569..5414960) 1 NC_015703.1 PFAM: Glycosyl transferases group 1; InterPro IPR001173; KEGG: brm:Bmur_0703 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase; group 1 glycosyl transferase 5414960 10873241 Runsl_4690 Runella slithyformis DSM 19594 group 1 glycosyl transferase YP_004658141.1 5413569 R 761193 CDS YP_004658142.1 338214085 10873242 complement(5414935..5415870) 1 NC_015703.1 PFAM: Glycosyl transferase 2; InterPro IPR001296; KEGG: lby:Lbys_3141 glycosyltransferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyltransferase; family 2 glycosyl transferase 5415870 10873242 Runsl_4691 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004658142.1 5414935 R 761193 CDS YP_004658143.1 338214086 10873243 complement(5415886..5417136) 1 NC_015703.1 PFAM: Glycosyl transferases group 1; InterPro IPR001173; KEGG: bth:BT_0473 glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycoside transferase 2; group 1 glycosyl transferase 5417136 10873243 Runsl_4692 Runella slithyformis DSM 19594 group 1 glycosyl transferase YP_004658143.1 5415886 R 761193 CDS YP_004658144.1 338214087 10873244 complement(5417457..5418416) 1 NC_015703.1 PFAM: Glycosyl transferase 2; KEGG: tbo:Thebr_1675 hypothetical protein; SPTR: membrane protein; family 2 glycosyl transferase 5418416 10873244 Runsl_4693 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004658144.1 5417457 R 761193 CDS YP_004658145.1 338214088 10873245 complement(5418484..5419827) 1 NC_015703.1 PFAM: O-Antigen ligase; InterPro IPR002797; KEGG: shg:Sph21_1797 polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; SPTR: uncharacterized protein; hypothetical protein 5419827 10873245 Runsl_4694 Runella slithyformis DSM 19594 hypothetical protein YP_004658145.1 5418484 R 761193 CDS YP_004658146.1 338214089 10873246 complement(5420681..5422189) 1 NC_015703.1 PFAM: Polysaccharide biosynthesis protein; SPTR: uncharacterized protein; polysaccharide biosynthesis protein 5422189 10873246 Runsl_4695 Runella slithyformis DSM 19594 polysaccharide biosynthesis protein YP_004658146.1 5420681 R 761193 CDS YP_004658147.1 338214090 10873247 complement(5422210..5423481) 1 NC_015703.1 COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: bvi:Bcep1808_0814 hexapaptide repeat-containing transferase; SPTR: Bacterial transferase, hexapeptide repeat protein; hypothetical protein 5423481 10873247 Runsl_4696 Runella slithyformis DSM 19594 hypothetical protein YP_004658147.1 5422210 R 761193 CDS YP_004658148.1 338214091 10873248 complement(5423513..5424097) 1 NC_015703.1 PFAM: Bacterial transferase hexapeptide (three repeats); hexapeptide repeat-containing transferase 5424097 10873248 Runsl_4697 Runella slithyformis DSM 19594 hexapeptide repeat-containing transferase YP_004658148.1 5423513 R 761193 CDS YP_004658149.1 338214092 10873249 complement(5424111..5425415) 1 NC_015703.1 COGs: COG2089 Sialic acid synthase; InterPro IPR013132; KEGG: hwa:HQ3519A sialic acid synthase (N-acetylneuraminate synthase) (N-acetylneuraminic acid synthase) (N-acetylneuraminate-9-phosphate synthase) (N-acetylneuraminic acid phosphate synthase); PFAM: N-acetylneuraminic acid synthase, N-terminal; PRIAM: N-acetylneuraminate synthase; SPTR: N-acylneuraminate-9-phosphate synthase; hypothetical protein 5425415 10873249 Runsl_4698 Runella slithyformis DSM 19594 hypothetical protein YP_004658149.1 5424111 R 761193 CDS YP_004658150.1 338214093 10873250 complement(5425498..5427069) 1 NC_015703.1 PFAM: NeuB family; COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase; InterPro IPR000760; KEGG: bvu:BVU_4035 inositol monophosphatase CysQ; PFAM: Inositol monophosphatase; SPTR: inositol monophosphatase CysQ; N-acetylneuraminate synthase 5427069 10873250 Runsl_4699 Runella slithyformis DSM 19594 N-acetylneuraminate synthase YP_004658150.1 5425498 R 761193 CDS YP_004658151.1 338214094 10873251 complement(5427014..5427694) 1 NC_015703.1 PFAM: Inositol monophosphatase; COGs: COG1083 CMP-N-acetylneuraminic acid synthetase; InterPro IPR003329; KEGG: pru:PRU_0447 hypothetical protein; PFAM: Acylneuraminate cytidylyltransferase; SPTR: Predicted protein; inositol monophosphatase 5427694 10873251 Runsl_4700 Runella slithyformis DSM 19594 inositol monophosphatase YP_004658151.1 5427014 R 761193 CDS YP_004658152.1 338214095 10873252 complement(5427698..5428363) 1 NC_015703.1 PFAM: Cytidylyltransferase; COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR003856:IPR005702; KEGG: sli:Slin_6307 capsular exopolysaccharide family; PFAM: Lipopolysaccharide biosynthesis; PRIAM: Non-specific protein-tyrosine kinase; SPTR: Capsular exopolysaccharide family; TIGRFAM: Exopolysaccharide synthesis protein; acylneuraminate cytidylyltransferase 5428363 10873252 Runsl_4701 Runella slithyformis DSM 19594 acylneuraminate cytidylyltransferase YP_004658152.1 5427698 R 761193 CDS YP_004658153.1 338214096 10873253 complement(5429086..5431464) 1 NC_015703.1 PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family; COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715:IPR019554; KEGG: sli:Slin_6308 ligand-binding protein; PFAM: Polysaccharide export protein; Soluble ligand binding domain; SPTR: Soluble ligand binding domain protein; capsular exopolysaccharide family protein 5431464 10873253 Runsl_4702 Runella slithyformis DSM 19594 capsular exopolysaccharide family protein YP_004658153.1 5429086 R 761193 CDS YP_004658154.1 338214097 10873254 complement(5431602..5432432) 1 NC_015703.1 PFAM: Polysaccharide biosynthesis/export protein; polysaccharide export protein 5432432 10873254 Runsl_4703 Runella slithyformis DSM 19594 polysaccharide export protein YP_004658154.1 5431602 R 761193 CDS YP_004658155.1 338214098 10873255 5432476..5432625 1 NC_015703.1 hypothetical protein 5432625 10873255 Runsl_4704 Runella slithyformis DSM 19594 hypothetical protein YP_004658155.1 5432476 D 761193 CDS YP_004658156.1 338214099 10873256 5432795..5432944 1 NC_015703.1 COGs: COG0499 S-adenosylhomocysteine hydrolase; HAMAP: Adenosylhomocysteinase; InterPro IPR000043:IPR015878; KEGG: sli:Slin_4338 adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; PRIAM: Adenosylhomocysteinase; SPTR: Adenosylhomocysteinase; TIGRFAM: S-adenosyl-L-homocysteine hydrolase; hypothetical protein 5432944 10873256 Runsl_4705 Runella slithyformis DSM 19594 hypothetical protein YP_004658156.1 5432795 D 761193 CDS YP_004658157.1 338214100 10873257 complement(5433414..5434730) 1 NC_015703.1 PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase; COGs: COG0192 S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthase; InterPro IPR002133; KEGG: lby:Lbys_1573 methionine adenosyltransferase; PFAM: S-adenosylmethionine synthetase; PRIAM: Methionine adenosyltransferase; SPTR: S-adenosylmethionine synthase; TIGRFAM: S-adenosylmethionine synthetase; adenosylhomocysteinase 5434730 10873257 Runsl_4706 Runella slithyformis DSM 19594 adenosylhomocysteinase YP_004658157.1 5433414 R 761193 CDS YP_004658158.1 338214101 10873258 complement(5435233..5436522) 1 NC_015703.1 PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, N-terminal domain; S-adenosylmethionine synthetase, central domain; TIGRFAM: S-adenosylmethionine synthetase; KEGG: sli:Slin_0577 hypothetical protein; SPTR: uncharacterized protein; S-adenosylmethionine synthase 5436522 10873258 Runsl_4707 Runella slithyformis DSM 19594 S-adenosylmethionine synthase YP_004658158.1 5435233 R 761193 CDS YP_004658159.1 338214102 10873259 complement(5436933..5438195) 1 NC_015703.1 SPTR: uncharacterized protein Lema_P075820.1; hypothetical protein 5438195 10873259 Runsl_4708 Runella slithyformis DSM 19594 hypothetical protein YP_004658159.1 5436933 R 761193 CDS YP_004658160.1 338214103 10873260 complement(5438243..5438845) 1 NC_015703.1 COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: scl:sce5208 hypothetical protein; PFAM: Protein of unknown function DUF820; SPTR: uncharacterized protein; hypothetical protein 5438845 10873260 Runsl_4709 Runella slithyformis DSM 19594 hypothetical protein YP_004658160.1 5438243 R 761193 CDS YP_004658161.1 338214104 10873261 complement(5439055..5439657) 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); hypothetical protein 5439657 10873261 Runsl_4710 Runella slithyformis DSM 19594 hypothetical protein YP_004658161.1 5439055 R 761193 CDS YP_004658162.1 338214105 10873262 5440219..5441601 1 NC_015703.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469:IPR001375; KEGG: dfe:Dfer_3655 peptidase S9B dipeptidylpeptidase IV domain protein; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; Peptidase S9, prolyl oligopeptidase, catalytic domain; PRIAM: Dipeptidyl-peptidase IV; SPTR: Peptidase S9B dipeptidylpeptidase IV domain protein; hypothetical protein 5441601 10873262 Runsl_4711 Runella slithyformis DSM 19594 hypothetical protein YP_004658162.1 5440219 D 761193 CDS YP_004658163.1 338214106 10873263 complement(5442262..5444454) 1 NC_015703.1 PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region; COGs: COG4783 Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: lby:Lbys_2280 peptidase M48 ste24p; PFAM: Peptidase M48, Ste24p; SPTR: Peptidase M48 Ste24p; dipeptidyl-peptidase IV 5444454 10873263 Runsl_4712 Runella slithyformis DSM 19594 dipeptidyl-peptidase IV YP_004658163.1 5442262 R 761193 CDS YP_004658164.1 338214107 10873264 complement(5444481..5445266) 1 NC_015703.1 PFAM: Peptidase M48; Prodigal; manually curated; peptidase M48 Ste24p 5445266 10873264 Runsl_4713 Runella slithyformis DSM 19594 peptidase M48 Ste24p YP_004658164.1 5444481 R 761193 CDS YP_004658165.1 338214108 10873266 5446715..5446885 1 NC_015703.1 COGs: COG0550 Topoisomerase IA; InterProIPR006171:IPR013497:IPR006154:IPR003601:IPR 003602:IPR005733; KEGG: sli:Slin_2030 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; SPTR: DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial-type; hypothetical protein 5446885 10873266 Runsl_4715 Runella slithyformis DSM 19594 hypothetical protein YP_004658165.1 5446715 D 761193 CDS YP_004658166.1 338214109 10873267 5446848..5449310 1 NC_015703.1 PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial; COGs: COG0412 Dienelactone hydrolase; InterPro IPR002925; KEGG: azl:AZL_021200 carboxymethylenebutenolidase; PFAM: Dienelactone hydrolase; PRIAM: Carboxymethylenebutenolidase; SPTR: Dienelactone hydrolase and related enzyme; DNA topoisomerase I 5449310 10873267 Runsl_4716 Runella slithyformis DSM 19594 DNA topoisomerase I YP_004658166.1 5446848 D 761193 CDS YP_004658167.1 338214110 10873268 5449556..5450416 1 NC_015703.1 PFAM: Dienelactone hydrolase; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3278 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; carboxymethylenebutenolidase 5450416 10873268 Runsl_4717 Runella slithyformis DSM 19594 carboxymethylenebutenolidase YP_004658167.1 5449556 D 761193 CDS YP_004658168.1 338214111 10873269 complement(5450578..5453256) 1 NC_015703.1 KEGG: sli:Slin_2018 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 5453256 10873269 Runsl_4718 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004658168.1 5450578 R 761193 CDS YP_004658169.1 338214112 10873270 complement(5453401..5455335) 1 NC_015703.1 InterPro IPR010496; KEGG: sli:Slin_1177 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; hypothetical protein 5455335 10873270 Runsl_4719 Runella slithyformis DSM 19594 hypothetical protein YP_004658169.1 5453401 R 761193 CDS YP_004658170.1 338214113 10873271 complement(5455637..5456281) 1 NC_015703.1 PFAM: Domain of Unknown Function (DUF1080); hypothetical protein 5456281 10873271 Runsl_4720 Runella slithyformis DSM 19594 hypothetical protein YP_004658170.1 5455637 R 761193 CDS YP_004658171.1 338214114 10873272 complement(5456458..5456592) 1 NC_015703.1 KEGG: sli:Slin_0230 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5456592 10873272 Runsl_4721 Runella slithyformis DSM 19594 hypothetical protein YP_004658171.1 5456458 R 761193 CDS YP_004658172.1 338214115 10873273 complement(5456611..5459478) 1 NC_015703.1 InterPro IPR011138; KEGG: lby:Lbys_2049 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; SPTR: Succinate dehydrogenase (Or fumarate reductase) cytochrome b subunit, b558 family; TIGRFAM: Succinate dehydrogenase, cytochrome b558 subunit; hypothetical protein 5459478 10873273 Runsl_4722 Runella slithyformis DSM 19594 hypothetical protein YP_004658172.1 5456611 R 761193 CDS YP_004658173.1 338214116 10873274 5459792..5460577 1 NC_015703.1 TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR003953:IPR004112:IPR011280; KEGG: dfe:Dfer_3970 succinate dehydrogenase flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; PRIAM: Succinate dehydrogenase; SPTR: Succinate dehydrogenase or fumarate reductase, flavoprotein subunit; TIGRFAM: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit, low-GC Gram-positive bacteria; succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family 5460577 10873274 Runsl_4723 Runella slithyformis DSM 19594 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family YP_004658173.1 5459792 D 761193 CDS YP_004658174.1 338214117 10873275 5460656..5462644 1 NC_015703.1 PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup; COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterPro IPR001041:IPR004489; KEGG: phe:Phep_0212 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; PFAM: Ferredoxin; SPTR: Succinate dehydrogenase/fumarate reductase iron-sulfur; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein; succinate dehydrogenase or fumarate reductase, flavoprotein subunit 5462644 10873275 Runsl_4724 Runella slithyformis DSM 19594 succinate dehydrogenase or fumarate reductase, flavoprotein subunit YP_004658174.1 5460656 D 761193 CDS YP_004658175.1 338214118 10873276 5462724..5463488 1 NC_015703.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein 5463488 10873276 Runsl_4725 Runella slithyformis DSM 19594 succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_004658175.1 5462724 D 761193 CDS YP_004658176.1 338214119 10873277 5463580..5463732 1 NC_015703.1 hypothetical protein 5463732 10873277 Runsl_4726 Runella slithyformis DSM 19594 hypothetical protein YP_004658176.1 5463580 D 761193 CDS YP_004658177.1 338214120 10873278 5464579..5464860 1 NC_015703.1 KEGG: dfe:Dfer_2156 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5464860 10873278 Runsl_4727 Runella slithyformis DSM 19594 hypothetical protein YP_004658177.1 5464579 D 761193 CDS YP_004658178.1 338214121 10873279 5465166..5465510 1 NC_015703.1 COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: dfe:Dfer_1823 beta-Ig-H3/fasciclin; PFAM: FAS1 domain; SMART: FAS1 domain; SPTR: Beta-Ig-H3/fasciclin; hypothetical protein 5465510 10873279 Runsl_4728 Runella slithyformis DSM 19594 hypothetical protein YP_004658178.1 5465166 D 761193 CDS YP_004658179.1 338214122 10873280 5465767..5466714 1 NC_015703.1 PFAM: Fasciclin domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: dfe:Dfer_5311 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: two-component sensor histidine kinase transcriptional regulator; beta-Ig-H3/fasciclin 5466714 10873280 Runsl_4729 Runella slithyformis DSM 19594 beta-Ig-H3/fasciclin YP_004658179.1 5465767 D 761193 CDS YP_004658180.1 338214123 10873281 5466793..5467872 1 NC_015703.1 PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: mtt:Ftrac_3670 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two-component system response regulator; signal transduction histidine kinase 5467872 10873281 Runsl_4730 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004658180.1 5466793 D 761193 CDS YP_004658181.1 338214124 10873282 5467881..5468645 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; KEGG: sli:Slin_5315 hypothetical protein; SPTR: uncharacterized protein; LytTR family two component transcriptional regulator 5468645 10873282 Runsl_4731 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004658181.1 5467881 D 761193 CDS YP_004658182.1 338214125 10873283 5468670..5469386 1 NC_015703.1 SPTR: uncharacterized protein; hypothetical protein 5469386 10873283 Runsl_4732 Runella slithyformis DSM 19594 hypothetical protein YP_004658182.1 5468670 D 761193 CDS YP_004658183.1 338214126 10873284 complement(5469448..5470203) 1 NC_015703.1 PFAM: Trehalose utilisation; KEGG: sur:STAUR_0232 hypothetical protein; SPTR: Uncharacterized protein; hypothetical protein 5470203 10873284 Runsl_4733 Runella slithyformis DSM 19594 hypothetical protein YP_004658183.1 5469448 R 761193 CDS YP_004658184.1 338214127 10873285 complement(5470240..5470962) 1 NC_015703.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: dfe:Dfer_2640 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; hypothetical protein 5470962 10873285 Runsl_4734 Runella slithyformis DSM 19594 hypothetical protein YP_004658184.1 5470240 R 761193 CDS YP_004658185.1 338214128 10873286 complement(5471121..5472041) 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: cpi:Cpin_6533 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; xylose isomerase domain-containing protein 5472041 10873286 Runsl_4735 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004658185.1 5471121 R 761193 CDS YP_004658186.1 338214129 10873287 complement(5472182..5473567) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: sli:Slin_5816 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein; oxidoreductase domain-containing protein 5473567 10873287 Runsl_4736 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004658186.1 5472182 R 761193 CDS YP_004658187.1 338214130 10873288 complement(5473647..5474852) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG1735 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR001559; KEGG: ace:Acel_0570 aryldialkylphosphatase; PFAM: Aryldialkylphosphatase; SPTR: Aryldialkylphosphatase; oxidoreductase domain-containing protein 5474852 10873288 Runsl_4737 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004658187.1 5473647 R 761193 CDS YP_004658188.1 338214131 10873289 complement(5474968..5475933) 1 NC_015703.1 PFAM: Phosphotriesterase; InterPro IPR003953; KEGG: ace:Acel_0569 fumarate reductase/succinate dehydrogenase flavoprotein; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; SPTR: Fumarate reductase/succinate dehydrogenase flavoprotein; aryldialkylphosphatase 5475933 10873289 Runsl_4738 Runella slithyformis DSM 19594 aryldialkylphosphatase YP_004658188.1 5474968 R 761193 CDS YP_004658189.1 338214132 10873290 complement(5475920..5477284) 1 NC_015703.1 PFAM: FAD dependent oxidoreductase; COGs: COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain; KEGG: sli:Slin_2645 hypothetical protein; SPTR: uncharacterized protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 5477284 10873290 Runsl_4739 Runella slithyformis DSM 19594 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_004658189.1 5475920 R 761193 CDS YP_004658190.1 338214133 10873291 complement(5477293..5478096) 1 NC_015703.1 COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: sli:Slin_2646 ROK family protein; PFAM: ROK; SPTR: ROK family protein; hypothetical protein 5478096 10873291 Runsl_4740 Runella slithyformis DSM 19594 hypothetical protein YP_004658190.1 5477293 R 761193 CDS YP_004658191.1 338214134 10873292 complement(5478143..5479036) 1 NC_015703.1 PFAM: ROK family; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_5818 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; ROK family protein 5479036 10873292 Runsl_4741 Runella slithyformis DSM 19594 ROK family protein YP_004658191.1 5478143 R 761193 CDS YP_004658192.1 338214135 10873293 complement(5479033..5479830) 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: sli:Slin_4971 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: transcriptional activator MltR; 3-oxoacyl-ACP reductase 5479830 10873293 Runsl_4742 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004658192.1 5479033 R 761193 CDS YP_004658193.1 338214136 10873294 5479898..5480824 1 NC_015703.1 PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG0383 Alpha-mannosidase; InterPro IPR011682; KEGG: bth:BT_2113 hypothetical protein; PFAM: Glycosyl hydrolases 38, C-terminal; SPTR: Glycosyl hydrolases 38-like protein; AraC family transcriptional regulator 5480824 10873294 Runsl_4743 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004658193.1 5479898 D 761193 CDS YP_004658194.1 338214137 10873295 complement(5480932..5483520) 1 NC_015703.1 PFAM: Glycosyl hydrolases family 38 C-terminal domain; COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; KEGG: aba:Acid345_0004 glutamine-fructose-6-phosphate transaminase (isomerizing); SPTR: Glutamine-fructose-6-phosphate transaminase (Isomerizing); glycoside hydrolase family protein 5483520 10873295 Runsl_4744 Runella slithyformis DSM 19594 glycoside hydrolase family protein YP_004658194.1 5480932 R 761193 CDS YP_004658195.1 338214138 10873296 complement(5483624..5484541) 1 NC_015703.1 InterPro IPR000620; KEGG: dfe:Dfer_1709 protein of unknown function DUF6 transmembrane; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: Integral membrane protein; hypothetical protein 5484541 10873296 Runsl_4745 Runella slithyformis DSM 19594 hypothetical protein YP_004658195.1 5483624 R 761193 CDS YP_004658196.1 338214139 10873297 complement(5484534..5485439) 1 NC_015703.1 PFAM: EamA-like transporter family; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: fno:Fnod_0088 ROK family protein; PFAM: ROK; PRIAM: Glucokinase; SPTR: ROK family protein; hypothetical protein 5485439 10873297 Runsl_4746 Runella slithyformis DSM 19594 hypothetical protein YP_004658196.1 5484534 R 761193 CDS YP_004658197.1 338214140 10873298 complement(5485540..5486463) 1 NC_015703.1 PFAM: ROK family; glucokinase 5486463 10873298 Runsl_4747 Runella slithyformis DSM 19594 glucokinase YP_004658197.1 5485540 R 761193 CDS YP_004658198.1 338214141 10873299 5486778..5487317 1 NC_015703.1 KEGG: sli:Slin_5503 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5487317 10873299 Runsl_4748 Runella slithyformis DSM 19594 hypothetical protein YP_004658198.1 5486778 D 761193 CDS YP_004658199.1 338214142 10873300 complement(5487686..5488486) 1 NC_015703.1 PFAM: Domain of unknown function (DUF1083); COGs: COG2311 membrane protein; KEGG: bcb:BCB4264_A2187 hypothetical protein; SPTR: Hypothetical Membrane Spanning Protein; hypothetical protein 5488486 10873300 Runsl_4749 Runella slithyformis DSM 19594 hypothetical protein YP_004658199.1 5487686 R 761193 CDS YP_004658200.1 338214143 10873301 complement(5488587..5489663) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1624); Protein of unknown function (DUF418); Prodigal; manually curated; hypothetical protein 5489663 10873301 Runsl_4750 Runella slithyformis DSM 19594 hypothetical protein YP_004658200.1 5488587 R 761193 CDS YP_004658201.1 338214144 10873303 complement(5490436..5491605) 1 NC_015703.1 KEGG: sli:Slin_2647 integral membrane protein; sugar permease; SPTR: integral membrane protein; sugar permease; ATPase AAA 5491605 10873303 Runsl_4752 Runella slithyformis DSM 19594 ATPase AAA YP_004658201.1 5490436 R 761193 CDS YP_004658202.1 338214145 10873304 complement(5491764..5492759) 1 NC_015703.1 PFAM: Fatty acid elongase 3-ketoacyl-CoA synthase 1; InterPro IPR005502; KEGG: sli:Slin_2648 ADP-ribosylation/crystallin J1; PFAM: ADP-ribosylation/Crystallin J1; SPTR: ADP-ribosylation/Crystallin J1; integral membrane protein; sugar permease 5492759 10873304 Runsl_4753 Runella slithyformis DSM 19594 integral membrane protein; sugar permease YP_004658202.1 5491764 R 761193 CDS YP_004658203.1 338214146 10873305 complement(5492831..5494378) 1 NC_015703.1 PFAM: ADP-ribosylglycohydrolase; COGs: COG0524 Sugar kinase ribokinase; InterPro IPR011611:IPR011877; KEGG: sli:Slin_2649 ribokinase; PFAM: Carbohydrate/purine kinase; PRIAM: Ribokinase; SPTR: Ribokinase; TIGRFAM: Ribokinase, bacterial; ADP-ribosylation/Crystallin J1 5494378 10873305 Runsl_4754 Runella slithyformis DSM 19594 ADP-ribosylation/Crystallin J1 YP_004658203.1 5492831 R 761193 CDS YP_004658204.1 338214147 10873306 complement(5494380..5495321) 1 NC_015703.1 PFAM: pfkB family carbohydrate kinase; TIGRFAM: ribokinase; KEGG: lby:Lbys_0370 hypothetical protein; SPTR: uncharacterized protein; ribokinase 5495321 10873306 Runsl_4755 Runella slithyformis DSM 19594 ribokinase YP_004658204.1 5494380 R 761193 CDS YP_004658205.1 338214148 10873307 5495492..5496925 1 NC_015703.1 manually curated; hypothetical protein 5496925 10873307 Runsl_4756 Runella slithyformis DSM 19594 hypothetical protein YP_004658205.1 5495492 D 761193 CDS YP_004658206.1 338214149 10873309 complement(5497521..5497931) 1 NC_015703.1 manually curated; hypothetical protein 5497931 10873309 Runsl_4758 Runella slithyformis DSM 19594 hypothetical protein YP_004658206.1 5497521 R 761193 CDS YP_004658207.1 338214150 10873311 complement(5498533..5499585) 1 NC_015703.1 InterPro IPR010496; KEGG: fbc:FB2170_00670 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; hypothetical protein 5499585 10873311 Runsl_4760 Runella slithyformis DSM 19594 hypothetical protein YP_004658207.1 5498533 R 761193 CDS YP_004658208.1 338214151 10873312 complement(5499811..5500536) 1 NC_015703.1 PFAM: Domain of Unknown Function (DUF1080); COGs: COG1414 Transcriptional regulator; InterPro IPR005471:IPR014757; KEGG: psn:Pedsa_0488 transcriptional regulator, IclR family; PFAM: Transcriptional regulator IclR, N-terminal; Transcriptional regulator IclR, C-terminal; SMART: Transcriptional regulator IclR, N-terminal; SPTR: uncharacterized protein; hypothetical protein 5500536 10873312 Runsl_4761 Runella slithyformis DSM 19594 hypothetical protein YP_004658208.1 5499811 R 761193 CDS YP_004658209.1 338214152 10873313 complement(5500909..5501730) 1 NC_015703.1 PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator; IclR family transcriptional regulator 5501730 10873313 Runsl_4762 Runella slithyformis DSM 19594 IclR family transcriptional regulator YP_004658209.1 5500909 R 761193 CDS YP_004658210.1 338214153 10873314 5501779..5501964 1 NC_015703.1 COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154:IPR013149; KEGG: bcl:ABC0438 Zn-dependent alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; PRIAM: D-xylulose reductase; SPTR: Zn-dependent alcohol dehydrogenase; hypothetical protein 5501964 10873314 Runsl_4763 Runella slithyformis DSM 19594 hypothetical protein YP_004658210.1 5501779 D 761193 CDS YP_004658211.1 338214154 10873315 5501982..5503001 1 NC_015703.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: psn:Pedsa_2182 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 2-deoxy-D-gluconate 3-dehydrogenase; SPTR: 2-deoxy-D-gluconate 3-dehydrogenase; D-xylulose reductase 5503001 10873315 Runsl_4764 Runella slithyformis DSM 19594 D-xylulose reductase YP_004658211.1 5501982 D 761193 CDS YP_004658212.1 338214155 10873316 complement(5503033..5503803) 1 NC_015703.1 PFAM: short chain dehydrogenase; TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_2262 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; 2-deoxy-D-gluconate 3-dehydrogenase 5503803 10873316 Runsl_4765 Runella slithyformis DSM 19594 2-deoxy-D-gluconate 3-dehydrogenase YP_004658212.1 5503033 R 761193 CDS YP_004658213.1 338214156 10873317 5504090..5507101 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_2261 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: uncharacterized protein; TonB-dependent receptor plug 5507101 10873317 Runsl_4766 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004658213.1 5504090 D 761193 CDS YP_004658214.1 338214157 10873318 5507166..5508872 1 NC_015703.1 PFAM: SusD family; InterPro IPR000514; KEGG: cti:RALTA_A1239 hypothetical protein; PFAM: Glycoside hydrolase, family 39; SPTR: uncharacterized protein; RagB/SusD domain-containing protein 5508872 10873318 Runsl_4767 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004658214.1 5507166 D 761193 CDS YP_004658215.1 338214158 10873319 5508997..5510457 1 NC_015703.1 PFAM: Glycosyl hydrolases family 39; COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: aex:Astex_3594 glycosyl hydrolase 88; PFAM: Glycosyl hydrolase, family 88; SPTR: Unsaturated glucuronyl hydrolase involved in regulation of surface properties-like protein; glycoside hydrolase 5510457 10873319 Runsl_4768 Runella slithyformis DSM 19594 glycoside hydrolase YP_004658215.1 5508997 D 761193 CDS YP_004658216.1 338214159 10873320 5510457..5512418 1 NC_015703.1 PFAM: Glycosyl Hydrolase 88; KEGG: gpb:HDN1F_14410 hypothetical protein; SPTR: uncharacterized protein; glycoside hydrolase 5512418 10873320 Runsl_4769 Runella slithyformis DSM 19594 glycoside hydrolase YP_004658216.1 5510457 D 761193 CDS YP_004658217.1 338214160 10873321 5512483..5513982 1 NC_015703.1 PFAM: Glycosyl hydrolases family 39; KEGG: cti:RALTA_A1239 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5513982 10873321 Runsl_4770 Runella slithyformis DSM 19594 hypothetical protein YP_004658217.1 5512483 D 761193 CDS YP_004658218.1 338214161 10873322 5513986..5515437 1 NC_015703.1 PFAM: Glycosyl hydrolases family 39; InterPro IPR011459:IPR006626; KEGG: chu:CHU_0455 pectate lyase-like protein; PFAM: Protein of unknown function DUF1565; SPTR: Pectate lyase-related protein; hypothetical protein 5515437 10873322 Runsl_4771 Runella slithyformis DSM 19594 hypothetical protein YP_004658218.1 5513986 D 761193 CDS YP_004658219.1 338214162 10873323 5515437..5517170 1 NC_015703.1 TIGRFAM: parallel beta-helix repeat (two copies); COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: ddc:Dd586_3323 glycosyl hydrolase 88; PFAM: Glycosyl hydrolase, family 88; SPTR: Unsaturated glucuronyl hydrolase involved in regulation of surface properties-like protein; hypothetical protein 5517170 10873323 Runsl_4772 Runella slithyformis DSM 19594 hypothetical protein YP_004658219.1 5515437 D 761193 CDS YP_004658220.1 338214163 10873324 5517176..5518681 1 NC_015703.1 PFAM: Glycosyl Hydrolase 88; COGs: COG0591 Na+/proline symporter; InterPro IPR001734:IPR019900; KEGG: cpi:Cpin_3541 Na+/solute symporter; PFAM: Sodium/solute symporter; SPTR: uncharacterized protein; TIGRFAM: Sodium/solute symporter, subgroup; glycoside hydrolase 5518681 10873324 Runsl_4773 Runella slithyformis DSM 19594 glycoside hydrolase YP_004658220.1 5517176 D 761193 CDS YP_004658221.1 338214164 10873325 5518793..5520469 1 NC_015703.1 PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: cli:Clim_2374 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short chain dehydrogenase; sodium solute transporter superfamily protein 5520469 10873325 Runsl_4774 Runella slithyformis DSM 19594 sodium solute transporter superfamily protein YP_004658221.1 5518793 D 761193 CDS YP_004658222.1 338214165 10873326 5520518..5521216 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG0684 Demethylmenaquinone methyltransferase; KEGG: caa:Caka_0515 dimethylmenaquinone methyltransferase; SPTR: Demethylmenaquinone methyltransferase-like protein; short-chain dehydrogenase/reductase SDR 5521216 10873326 Runsl_4775 Runella slithyformis DSM 19594 short-chain dehydrogenase/reductase SDR YP_004658222.1 5520518 D 761193 CDS YP_004658223.1 338214166 10873327 5521216..5521905 1 NC_015703.1 PFAM: Demethylmenaquinone methyltransferase; SPTR: uncharacterized protein; dimethylmenaquinone methyltransferase 5521905 10873327 Runsl_4776 Runella slithyformis DSM 19594 dimethylmenaquinone methyltransferase YP_004658223.1 5521216 D 761193 CDS YP_004658224.1 338214167 10873328 5521907..5524003 1 NC_015703.1 PFAM: Heparinase II/III-like protein; InterPro IPR004360; KEGG: sus:Acid_1152 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; hypothetical protein 5524003 10873328 Runsl_4777 Runella slithyformis DSM 19594 hypothetical protein YP_004658224.1 5521907 D 761193 CDS YP_004658225.1 338214168 10873329 5524016..5524468 1 NC_015703.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154:IPR013149; KEGG: cao:Celal_2520 L-threonine 3-dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; PRIAM: L-iditol 2-dehydrogenase; SPTR: L-threonine 3-dehydrogenase; Glyoxalase/bleomycin resistance protein/dioxygenase 5524468 10873329 Runsl_4778 Runella slithyformis DSM 19594 Glyoxalase/bleomycin resistance protein/dioxygenase YP_004658225.1 5524016 D 761193 CDS YP_004658226.1 338214169 10873330 5524545..5525558 1 NC_015703.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase; KEGG: cly:Celly_3120 hypothetical protein; SPTR: uncharacterized protein; L-iditol 2-dehydrogenase 5525558 10873330 Runsl_4779 Runella slithyformis DSM 19594 L-iditol 2-dehydrogenase YP_004658226.1 5524545 D 761193 CDS YP_004658227.1 338214170 10873331 complement(5525635..5526426) 1 NC_015703.1 COGs: COG5587 conserved hypothetical protein; InterPro IPR012808; KEGG: sli:Slin_2331 hypothetical protein; PFAM: Conserved hypothetical protein CHP02453; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02453; hypothetical protein 5526426 10873331 Runsl_4780 Runella slithyformis DSM 19594 hypothetical protein YP_004658227.1 5525635 R 761193 CDS YP_004658228.1 338214171 10873332 complement(5526598..5527278) 1 NC_015703.1 PFAM: Conserved hypothetical protein (DUF2461); TIGRFAM: TIGR02453 family protein; COGs: COG0180 Tryptophanyl-tRNA synthetase; InterPro IPR002305:IPR002306; KEGG: lby:Lbys_0317 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; PRIAM: Tryptophan--tRNA ligase; SPTR: Tryptophanyl-tRNA synthetase; TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; hypothetical protein 5527278 10873332 Runsl_4781 Runella slithyformis DSM 19594 hypothetical protein YP_004658228.1 5526598 R 761193 CDS YP_004658229.1 338214172 10873333 5527353..5528330 1 NC_015703.1 PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase; InterPro IPR000326; KEGG: sli:Slin_2918 phosphoesterase PA-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: Phosphoesterase PA-phosphatase related protein; tryptophanyl-tRNA synthetase 5528330 10873333 Runsl_4782 Runella slithyformis DSM 19594 tryptophanyl-tRNA synthetase YP_004658229.1 5527353 D 761193 CDS YP_004658230.1 338214173 10873334 5528371..5528946 1 NC_015703.1 PFAM: PAP2 superfamily; COGs: COG0462 Phosphoribosylpyrophosphate synthetase; InterPro IPR000836:IPR005946; KEGG: dfe:Dfer_0421 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase; PRIAM: Ribose-phosphate diphosphokinase; SPTR: Ribose-phosphate pyrophosphokinase; TIGRFAM: Phosphoribosyl pyrophosphokinase; phosphoesterase PA-phosphatase-like protein 5528946 10873334 Runsl_4783 Runella slithyformis DSM 19594 phosphoesterase PA-phosphatase-like protein YP_004658230.1 5528371 D 761193 CDS YP_004658231.1 338214174 10873335 5529024..5529968 1 NC_015703.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase; HAMAP: Ribosomal protein L25; InterPro IPR001021:IPR020055; KEGG: dfe:Dfer_0420 50S ribosomal protein L25/general stress protein Ctc; PFAM: Ribosomal protein L25, N-terminal; SPTR: 50S ribosomal protein L25; TIGRFAM: Ribosomal protein L25; ribose-phosphate pyrophosphokinase 5529968 10873335 Runsl_4784 Runella slithyformis DSM 19594 ribose-phosphate pyrophosphokinase YP_004658231.1 5529024 D 761193 CDS YP_004658232.1 338214175 10873336 5530042..5530605 1 NC_015703.1 PFAM: Ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form; COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR013766:IPR005746; KEGG: dfe:Dfer_0428 thioredoxin; PFAM: Thioredoxin domain; SPTR: Thioredoxin; TIGRFAM: Thioredoxin; 50S ribosomal protein L25 5530605 10873336 Runsl_4785 Runella slithyformis DSM 19594 50S ribosomal protein L25 YP_004658232.1 5530042 D 761193 CDS YP_004658233.1 338214176 10873337 complement(5530700..5531035) 1 NC_015703.1 PFAM: Thioredoxin; TIGRFAM: thioredoxin; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: dsh:Dshi_0676 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: beta-lactamase; thioredoxin 5531035 10873337 Runsl_4786 Runella slithyformis DSM 19594 thioredoxin YP_004658233.1 5530700 R 761193 CDS YP_004658234.1 338214177 10873338 complement(5531152..5532408) 1 NC_015703.1 PFAM: Beta-lactamase; COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA dimethylallyltransferase; InterPro IPR002627:IPR018022; KEGG: dfe:Dfer_0552 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: tRNA dimethylallyltransferase 1; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; beta-lactamase 5532408 10873338 Runsl_4787 Runella slithyformis DSM 19594 beta-lactamase YP_004658234.1 5531152 R 761193 CDS YP_004658235.1 338214178 10873339 complement(5532425..5533348) 1 NC_015703.1 PFAM: IPP transferase; TIGRFAM: tRNA dimethylallyltransferase; KEGG: dfe:Dfer_0551 hypothetical protein; SPTR: uncharacterized protein; tRNA dimethylallyltransferase 5533348 10873339 Runsl_4788 Runella slithyformis DSM 19594 tRNA dimethylallyltransferase YP_004658235.1 5532425 R 761193 CDS YP_004658236.1 338214179 10873340 complement(5533345..5534226) 1 NC_015703.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_5818 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; hypothetical protein 5534226 10873340 Runsl_4789 Runella slithyformis DSM 19594 hypothetical protein YP_004658236.1 5533345 R 761193 CDS YP_004658237.1 338214180 10873341 5534349..5535161 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: sli:Slin_2646 ROK family protein; PFAM: ROK; PRIAM: N-acylmannosamine kinase; SPTR: ROK family protein; 3-oxoacyl-ACP reductase 5535161 10873341 Runsl_4790 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004658237.1 5534349 D 761193 CDS YP_004658238.1 338214181 10873342 5535164..5536057 1 NC_015703.1 PFAM: ROK family; COGs: COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain; KEGG: sli:Slin_2645 hypothetical protein; SPTR: uncharacterized protein; N-acylmannosamine kinase 5536057 10873342 Runsl_4791 Runella slithyformis DSM 19594 N-acylmannosamine kinase YP_004658238.1 5535164 D 761193 CDS YP_004658239.1 338214182 10873343 5536095..5536907 1 NC_015703.1 COGs: COG1247 Sortase and related acyltransferase; InterPro IPR000182; KEGG: bgl:bglu_2g20880 histone acetyltransferase HPA11; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase; hypothetical protein 5536907 10873343 Runsl_4792 Runella slithyformis DSM 19594 hypothetical protein YP_004658239.1 5536095 D 761193 CDS YP_004658240.1 338214183 10873344 5536935..5537423 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG0620 Methionine synthase II (cobalamin-independent); InterPro IPR002629; KEGG: sli:Slin_5820 methionine synthase vitamin-B12 independent; PFAM: Methionine synthase, vitamin-B12 independent; SPTR: Methionine synthase vitamin-B12 independent; N-acetyltransferase GCN5 5537423 10873344 Runsl_4793 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004658240.1 5536935 D 761193 CDS YP_004658241.1 338214184 10873345 5537599..5538627 1 NC_015703.1 PFAM: Cobalamin-independent synthase, Catalytic domain; KEGG: sli:Slin_1321 hypothetical protein; SPTR: uncharacterized protein; vitamin-B12 independent methionine synthase 5538627 10873345 Runsl_4794 Runella slithyformis DSM 19594 vitamin-B12 independent methionine synthase YP_004658241.1 5537599 D 761193 CDS YP_004658242.1 338214185 10873346 complement(5538746..5540968) 1 NC_015703.1 InterPro IPR011445:IPR011933; KEGG: sli:Slin_1322 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Double-transmembrane region, N-terminal; hypothetical protein 5540968 10873346 Runsl_4795 Runella slithyformis DSM 19594 hypothetical protein YP_004658242.1 5538746 R 761193 CDS YP_004658243.1 338214186 10873347 complement(5540965..5542185) 1 NC_015703.1 PFAM: Aerotolerance regulator N-terminal; TIGRFAM: N-terminal double-transmembrane domain; COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: sli:Slin_1323 hypothetical protein; PFAM: Protein of unknown function DUF58; SPTR: uncharacterized protein; double-transmembrane region domain-containing protein 5542185 10873347 Runsl_4796 Runella slithyformis DSM 19594 double-transmembrane region domain-containing protein YP_004658243.1 5540965 R 761193 CDS YP_004658244.1 338214187 10873348 complement(5542306..5543187) 1 NC_015703.1 PFAM: Protein of unknown function DUF58; Prodigal; manually curated; hypothetical protein 5543187 10873348 Runsl_4797 Runella slithyformis DSM 19594 hypothetical protein YP_004658244.1 5542306 R 761193 CDS YP_004658245.1 338214188 10873350 complement(5543933..5544910) 1 NC_015703.1 PFAM: ATPase associated with various cellular activities (AAA); KEGG: sli:Slin_1325 hypothetical protein; SPTR: uncharacterized protein; ATPase 5544910 10873350 Runsl_4799 Runella slithyformis DSM 19594 ATPase YP_004658245.1 5543933 R 761193 CDS YP_004658246.1 338214189 10873351 complement(5544914..5545549) 1 NC_015703.1 manually curated; hypothetical protein 5545549 10873351 Runsl_4800 Runella slithyformis DSM 19594 hypothetical protein YP_004658246.1 5544914 R 761193 CDS YP_004658247.1 338214190 10873353 complement(5545848..5547209) 1 NC_015703.1 PFAM: modulator of DNA gyrase; COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510:IPR006311; KEGG: lby:Lbys_3468 peptidase U62 modulator of DNA gyrase; PFAM: Peptidase U62, modulator of DNA gyrase; SPTR: Peptidase U62 modulator of DNA gyrase; peptidase U62 5547209 10873353 Runsl_4802 Runella slithyformis DSM 19594 peptidase U62 YP_004658247.1 5545848 R 761193 CDS YP_004658248.1 338214191 10873354 complement(5547229..5548875) 1 NC_015703.1 PFAM: modulator of DNA gyrase; COGs: COG2068 Uncharacterized MobA-related protein; InterPro IPR001228; KEGG: sli:Slin_1745 hypothetical protein; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: uncharacterized protein; peptidase U62 5548875 10873354 Runsl_4803 Runella slithyformis DSM 19594 peptidase U62 YP_004658248.1 5547229 R 761193 CDS YP_004658249.1 338214192 10873355 complement(5549039..5549629) 1 NC_015703.1 PFAM: Uncharacterized protein family UPF0007; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase 5549629 10873355 Runsl_4804 Runella slithyformis DSM 19594 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_004658249.1 5549039 R 761193 CDS YP_004658252.1 338214193 10873358 5550735..5553020 1 NC_015703.1 PFAM: OmpA family; PPIC-type PPIASE domain; InterPro IPR015391:IPR000297; KEGG: sli:Slin_0806 PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SurA N-terminal; SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 5553020 10873358 Runsl_4807 Runella slithyformis DSM 19594 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004658252.1 5550735 D 761193 CDS YP_004658253.1 338214194 10873359 5553078..5554472 1 NC_015703.1 PFAM: SurA N-terminal domain; PPIC-type PPIASE domain; COGs: COG0714 MoxR-like ATPase; InterPro IPR011703; KEGG: sli:Slin_0805 ATPase AAA; PFAM: ATPase associated with various cellular activities, AAA-3; SPTR: ATPase associated with various cellular activities AAA_3; PpiC-type peptidyl-prolyl cis-trans isomerase 5554472 10873359 Runsl_4808 Runella slithyformis DSM 19594 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004658253.1 5553078 D 761193 CDS YP_004658254.1 338214195 10873360 5554547..5555509 1 NC_015703.1 PFAM: ATPase associated with various cellular activities (AAA); COGs: COG0281 Malic enzyme; InterPro IPR012301:IPR012302:IPR002505; KEGG: dfe:Dfer_0248 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))., phosphate acetyltransferase; PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; Phosphate acetyl/butaryl transferase; SPTR: Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP(+))., Phosphate acetyltransferase; ATPase 5555509 10873360 Runsl_4809 Runella slithyformis DSM 19594 ATPase YP_004658254.1 5554547 D 761193 CDS YP_004658255.1 338214196 10873361 5555770..5558040 1 NC_015703.1 PFAM: Phosphate acetyl/butaryl transferase; Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain; TIGRFAM: phosphate acetyltransferase; COGs: COG0196 FAD synthase; InterPro IPR015864:IPR015865:IPR002606; KEGG: dfe:Dfer_1247 riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; PRIAM: FAD synthetase., Riboflavin kinase; SPTR: Riboflavin biosynthesis protein RibF; TIGRFAM: Riboflavin kinase/FAD synthetase; malic protein NAD-binding protein 5558040 10873361 Runsl_4810 Runella slithyformis DSM 19594 malic protein NAD-binding protein YP_004658255.1 5555770 D 761193 CDS YP_004658258.1 338214197 10873364 complement(5559765..5560559) 1 NC_015703.1 PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP; KEGG: sli:Slin_0787 hypothetical protein; SPTR: uncharacterized protein; UDP-diphosphatase 5560559 10873364 Runsl_4813 Runella slithyformis DSM 19594 UDP-diphosphatase YP_004658258.1 5559765 R 761193 CDS YP_004658259.1 338214198 10873365 complement(5560623..5560835) 1 NC_015703.1 PFAM: Protein of unknown function (DUF3098); COGs: COG2177 Cell division protein; InterPro IPR003838; KEGG: dfe:Dfer_1243 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; hypothetical protein 5560835 10873365 Runsl_4814 Runella slithyformis DSM 19594 hypothetical protein YP_004658259.1 5560623 R 761193 CDS YP_004658260.1 338214199 10873366 complement(5560877..5561758) 1 NC_015703.1 PFAM: Predicted permease; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076:IPR000172; KEGG: sli:Slin_5806 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; hypothetical protein 5561758 10873366 Runsl_4815 Runella slithyformis DSM 19594 hypothetical protein YP_004658260.1 5560877 R 761193 CDS YP_004658261.1 338214200 10873367 complement(5561992..5563704) 1 NC_015703.1 PFAM: GMC oxidoreductase; KEGG: sli:Slin_5805 hypothetical protein; SPTR: uncharacterized protein; glucose-methanol-choline oxidoreductase 5563704 10873367 Runsl_4816 Runella slithyformis DSM 19594 glucose-methanol-choline oxidoreductase YP_004658261.1 5561992 R 761193 CDS YP_004658262.1 338214201 10873368 complement(5563736..5564266) 1 NC_015703.1 COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: sli:Slin_1591 glucose/sorbosone dehydrogenase; SPTR: Glucose/sorbosone dehydrogenase-like protein; hypothetical protein 5564266 10873368 Runsl_4817 Runella slithyformis DSM 19594 hypothetical protein YP_004658262.1 5563736 R 761193 CDS YP_004658263.1 338214202 10873369 5564470..5565690 1 NC_015703.1 PFAM: Glucose / Sorbosone dehydrogenase; InterPro IPR002059:IPR011129; KEGG: sli:Slin_4054 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding domain protein; glucose/sorbosone dehydrogenase 5565690 10873369 Runsl_4818 Runella slithyformis DSM 19594 glucose/sorbosone dehydrogenase YP_004658263.1 5564470 D 761193 CDS YP_004658264.1 338214203 10873370 5566015..5566464 1 NC_015703.1 PFAM: 'Cold-shock' DNA-binding domain; cold-shock protein 5566464 10873370 Runsl_4819 Runella slithyformis DSM 19594 cold-shock protein YP_004658264.1 5566015 D 761193 CDS YP_004658265.1 338214204 10873371 complement(5567173..5567445) 1 NC_015703.1 COGs: COG1896 hydrolase of HD superfamily; InterPro IPR006674; KEGG: cpi:Cpin_3043 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SPTR: Metal dependent phosphohydrolase; hypothetical protein 5567445 10873371 Runsl_4820 Runella slithyformis DSM 19594 hypothetical protein YP_004658265.1 5567173 R 761193 CDS YP_004658266.1 338214205 10873372 5568641..5569174 1 NC_015703.1 KEGG: sli:Slin_2213 hypothetical protein; SPTR: uncharacterized protein; metal dependent phosphohydrolase 5569174 10873372 Runsl_4821 Runella slithyformis DSM 19594 metal dependent phosphohydrolase YP_004658266.1 5568641 D 761193 CDS YP_004658267.1 338214206 10873373 5569282..5569620 1 NC_015703.1 PFAM: Protein of unknown function (DUF2568); KEGG: dfe:Dfer_4107 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5569620 10873373 Runsl_4822 Runella slithyformis DSM 19594 hypothetical protein YP_004658267.1 5569282 D 761193 CDS YP_004658268.1 338214207 10873374 5569678..5570028 1 NC_015703.1 KEGG: sli:Slin_3515 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5570028 10873374 Runsl_4823 Runella slithyformis DSM 19594 hypothetical protein YP_004658268.1 5569678 D 761193 CDS YP_004658269.1 338214208 10873375 complement(5570054..5570437) 1 NC_015703.1 PFAM: Protein of unknown function (DUF3037); KEGG: cpi:Cpin_6310 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5570437 10873375 Runsl_4824 Runella slithyformis DSM 19594 hypothetical protein YP_004658269.1 5570054 R 761193 CDS YP_004658270.1 338214209 10873376 complement(5570415..5571212) 1 NC_015703.1 InterPro IPR001440:IPR019734; KEGG: sli:Slin_1363 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: TPR repeat-containing protein; hypothetical protein 5571212 10873376 Runsl_4825 Runella slithyformis DSM 19594 hypothetical protein YP_004658270.1 5570415 R 761193 CDS YP_004658271.1 338214210 10873377 5571463..5571939 1 NC_015703.1 KEGG: sli:Slin_5342 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5571939 10873377 Runsl_4826 Runella slithyformis DSM 19594 hypothetical protein YP_004658271.1 5571463 D 761193 CDS YP_004658272.1 338214211 10873378 complement(5571944..5573227) 1 NC_015703.1 hypothetical protein 5573227 10873378 Runsl_4827 Runella slithyformis DSM 19594 hypothetical protein YP_004658272.1 5571944 R 761193 CDS YP_004658273.1 338214212 10873379 5573294..5573545 1 NC_015703.1 hypothetical protein 5573545 10873379 Runsl_4828 Runella slithyformis DSM 19594 hypothetical protein YP_004658273.1 5573294 D 761193 CDS YP_004658274.1 338214213 10873380 complement(5573435..5573989) 1 NC_015703.1 manually curated; hypothetical protein 5573989 10873380 Runsl_4829 Runella slithyformis DSM 19594 hypothetical protein YP_004658274.1 5573435 R 761193 CDS YP_004658275.1 338214214 10873382 complement(5574412..5574612) 1 NC_015703.1 COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: reh:H16_B0832 2-phosphonopropionate transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Phosphonate metabolism protein PhnB; hypothetical protein 5574612 10873382 Runsl_4831 Runella slithyformis DSM 19594 hypothetical protein YP_004658275.1 5574412 R 761193 CDS YP_004658276.1 338214215 10873383 complement(5574614..5575882) 1 NC_015703.1 PFAM: Major Facilitator Superfamily; COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154:IPR013149; KEGG: psl:Psta_3166 phosphonate catabolism associated alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; SPTR: Alcohol dehydrogenase; manually curated; major facilitator superfamily protein 5575882 10873383 Runsl_4832 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004658276.1 5574614 R 761193 CDS YP_004658277.1 338214216 10873384 complement(5575897..5576991) 1 NC_015703.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: phosphonate catabolism associated alcohol dehydrogenase; COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: dfe:Dfer_3144 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family; alcohol dehydrogenase 5576991 10873384 Runsl_4833 Runella slithyformis DSM 19594 alcohol dehydrogenase YP_004658277.1 5575897 R 761193 CDS YP_004658278.1 338214217 10873385 complement(5577197..5577880) 1 NC_015703.1 PFAM: GDSL-like Lipase/Acylhydrolase; COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR007527:IPR000330:IPR001650:IPR014001; KEGG: dfe:Dfer_3874 non-specific serine/threonine protein kinase; PFAM: SNF2-related; Zinc finger, SWIM-type; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Non-specific serine/threonine protein kinase; G-D-S-L family lipolytic protein 5577880 10873385 Runsl_4834 Runella slithyformis DSM 19594 G-D-S-L family lipolytic protein YP_004658278.1 5577197 R 761193 CDS YP_004658279.1 338214218 10873386 complement(5578021..5581875) 1 NC_015703.1 PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain; SWIM zinc finger; SNF2-like protein 5581875 10873386 Runsl_4835 Runella slithyformis DSM 19594 SNF2-like protein YP_004658279.1 5578021 R 761193 CDS YP_004658280.1 338214219 10873387 complement(5581959..5582258) 1 NC_015703.1 KEGG: sli:Slin_2429 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5582258 10873387 Runsl_4836 Runella slithyformis DSM 19594 hypothetical protein YP_004658280.1 5581959 R 761193 CDS YP_004658281.1 338214220 10873388 5582371..5583216 1 NC_015703.1 InterPro IPR010496; KEGG: dfe:Dfer_1970 protein of unknown function DUF1080; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; hypothetical protein 5583216 10873388 Runsl_4837 Runella slithyformis DSM 19594 hypothetical protein YP_004658281.1 5582371 D 761193 CDS YP_004658282.1 338214221 10873389 complement(5583337..5584116) 1 NC_015703.1 PFAM: Domain of Unknown Function (DUF1080); KEGG: amd:AMED_6200 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5584116 10873389 Runsl_4838 Runella slithyformis DSM 19594 hypothetical protein YP_004658282.1 5583337 R 761193 CDS YP_004658283.1 338214222 10873390 complement(5584181..5585077) 1 NC_015703.1 KEGG: dfe:Dfer_5392 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5585077 10873390 Runsl_4839 Runella slithyformis DSM 19594 hypothetical protein YP_004658283.1 5584181 R 761193 CDS YP_004658284.1 338214223 10873391 complement(5585249..5586037) 1 NC_015703.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2236); KEGG: psn:Pedsa_0396 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5586037 10873391 Runsl_4840 Runella slithyformis DSM 19594 hypothetical protein YP_004658284.1 5585249 R 761193 CDS YP_004658285.1 338214224 10873392 complement(5586022..5586411) 1 NC_015703.1 PFAM: Protein of unknown function (DUF2809); COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_2699 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; hypothetical protein 5586411 10873392 Runsl_4841 Runella slithyformis DSM 19594 hypothetical protein YP_004658285.1 5586022 R 761193 CDS YP_004658286.1 338214225 10873393 complement(5586690..5589128) 1 NC_015703.1 COGs: COG2860 membrane protein; InterPro IPR005115; KEGG: lbf:LBF_2554 hypothetical protein; PFAM: Uncharacterised protein family UPF0126; SPTR: uncharacterized protein; TonB-dependent receptor 5589128 10873393 Runsl_4842 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004658286.1 5586690 R 761193 CDS YP_004658287.1 338214226 10873394 5589469..5590080 1 NC_015703.1 PFAM: UPF0126 domain; COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: ppn:Palpr_0120 bile acid:sodium symporter; PFAM: Bile acid:sodium symporter; SPTR: Bile acid:sodium symporter; hypothetical protein 5590080 10873394 Runsl_4843 Runella slithyformis DSM 19594 hypothetical protein YP_004658287.1 5589469 D 761193 CDS YP_004658288.1 338214227 10873395 5590101..5591039 1 NC_015703.1 PFAM: Sodium Bile acid symporter family; COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: mtt:Ftrac_2184 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; bile acid:sodium symporter 5591039 10873395 Runsl_4844 Runella slithyformis DSM 19594 bile acid:sodium symporter YP_004658288.1 5590101 D 761193 CDS YP_004658289.1 338214228 10873396 5591259..5592482 1 NC_015703.1 PFAM: Acyltransferase; Prodigal; manually curated; phospholipid/glycerol acyltransferase 5592482 10873396 Runsl_4845 Runella slithyformis DSM 19594 phospholipid/glycerol acyltransferase YP_004658289.1 5591259 D 761193 CDS YP_004658290.1 338214229 10873398 5593586..5594422 1 NC_015703.1 PFAM: FdhD/NarQ family; TIGRFAM: formate dehydrogenase accessory protein FdhD; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_5310 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: uncharacterized protein; protein fdhD 5594422 10873398 Runsl_4847 Runella slithyformis DSM 19594 protein fdhD YP_004658290.1 5593586 D 761193 CDS YP_004658291.1 338214230 10873399 5594561..5596954 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR008030; KEGG: lth:KLTH0E10032g KLTH0E10032p; SPTR: KLTH0E10032p; TonB-dependent receptor 5596954 10873399 Runsl_4848 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004658291.1 5594561 D 761193 CDS YP_004658292.1 338214231 10873400 5597031..5597921 1 NC_015703.1 PFAM: NmrA-like family; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: dfe:Dfer_5311 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; hypothetical protein 5597921 10873400 Runsl_4849 Runella slithyformis DSM 19594 hypothetical protein YP_004658292.1 5597031 D 761193 CDS YP_004658293.1 338214232 10873401 5597937..5598956 1 NC_015703.1 PFAM: Histidine kinase; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_5312 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; signal transduction histidine kinase 5598956 10873401 Runsl_4850 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004658293.1 5597937 D 761193 CDS YP_004658294.1 338214233 10873402 5598953..5599720 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060; KEGG: ral:Rumal_2538 AraC family transcriptional regulator; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; LytTR family two component transcriptional regulator 5599720 10873402 Runsl_4851 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004658294.1 5598953 D 761193 CDS YP_004658295.1 338214234 10873403 complement(5600018..5600638) 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: sli:Slin_0986 hypothetical protein; SPTR: uncharacterized protein; AraC family transcriptional regulator 5600638 10873403 Runsl_4852 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004658295.1 5600018 R 761193 CDS YP_004658296.1 338214235 10873404 complement(5601135..5601836) 1 NC_015703.1 COGs: COG0234 Co-chaperonin GroES (HSP10); HAMAP: Chaperonin Cpn10, subgroup; InterPro IPR001476:IPR020818; KEGG: lby:Lbys_1302 chaperonin cpn10; PFAM: Chaperonin Cpn10; SPTR: 10 kDa chaperonin; hypothetical protein 5601836 10873404 Runsl_4853 Runella slithyformis DSM 19594 hypothetical protein YP_004658296.1 5601135 R 761193 CDS YP_004658297.1 338214236 10873405 5602166..5602456 1 NC_015703.1 PFAM: Chaperonin 10 Kd subunit; COGs: COG0459 Chaperonin GroEL (HSP60 family); HAMAP: 60 kDa chaperonin; InterPro IPR002423:IPR001844; KEGG: sli:Slin_0984 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1; SPTR: 60 kDa chaperonin; TIGRFAM: Chaperonin Cpn60; molecular chaperone GroES 5602456 10873405 Runsl_4854 Runella slithyformis DSM 19594 molecular chaperone GroES YP_004658297.1 5602166 D 761193 CDS YP_004658298.1 338214237 10873406 5602567..5604210 1 NC_015703.1 PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL; COGs: COG0466 ATP-dependent Lon protease; InterProIPR003111:IPR003959:IPR008269:IPR003593:IPR 004815; KEGG: dfe:Dfer_4129 ATP-dependent protease La; PFAM: Peptidase S16, lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core; PRIAM: Endopeptidase La; SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; SPTR: ATP-dependent protease La; TIGRFAM: Peptidase S16, ATP-dependent protease La; molecular chaperone GroEL 5604210 10873406 Runsl_4855 Runella slithyformis DSM 19594 molecular chaperone GroEL YP_004658298.1 5602567 D 761193 CDS YP_004658299.1 338214238 10873407 5604706..5607201 1 NC_015703.1 PFAM: ATP-dependent protease La (LON) domain; ATPase associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: dfe:Dfer_2723 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Aspartate transaminase; SPTR: Aminotransferase class I and II; anti-sigma H sporulation factor LonB 5607201 10873407 Runsl_4856 Runella slithyformis DSM 19594 anti-sigma H sporulation factor LonB YP_004658299.1 5604706 D 761193 CDS YP_004658300.1 338214239 10873408 complement(5607293..5608537) 1 NC_015703.1 PFAM: Aminotransferase class I and II; KEGG: dfe:Dfer_4253 hypothetical protein; SPTR: uncharacterized protein; aspartate transaminase 5608537 10873408 Runsl_4857 Runella slithyformis DSM 19594 aspartate transaminase YP_004658300.1 5607293 R 761193 CDS YP_004658301.1 338214240 10873409 complement(5608618..5609355) 1 NC_015703.1 KEGG: dfe:Dfer_2593 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5609355 10873409 Runsl_4858 Runella slithyformis DSM 19594 hypothetical protein YP_004658301.1 5608618 R 761193 CDS YP_004658302.1 338214241 10873410 5609508..5610530 1 NC_015703.1 COGs: COG2715 Uncharacterized membrane protein required for spore maturation in B.subtilis.; InterPro IPR011642; KEGG: sli:Slin_4460 nucleoside recognition domain protein; PFAM: Nucleoside recognition; SPTR: Nucleoside recognition domain protein; hypothetical protein 5610530 10873410 Runsl_4859 Runella slithyformis DSM 19594 hypothetical protein YP_004658302.1 5609508 D 761193 CDS YP_004658303.1 338214242 10873411 5610643..5611878 1 NC_015703.1 PFAM: Nucleoside recognition; COGs: COG0698 Ribose 5-phosphate isomerase RpiB; InterPro IPR003500:IPR004785; KEGG: dfe:Dfer_4874 sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; PRIAM: Ribose-5-phosphate isomerase; SPTR: Sugar-phosphate isomerase, RpiB/LacA/LacB family; TIGRFAM: Ribose/galactose isomerase; Ribose 5-phosphate isomerase B; nucleoside recognition domain-containing protein 5611878 10873411 Runsl_4860 Runella slithyformis DSM 19594 nucleoside recognition domain-containing protein YP_004658303.1 5610643 D 761193 CDS YP_004658304.1 338214243 10873412 complement(5611875..5612309) 1 NC_015703.1 PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family; COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: dfe:Dfer_4873 hypothetical protein; PFAM: Conserved hypothetical protein CHP00730; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00730; RpiB/LacA/LacB family sugar-phosphate isomerase 5612309 10873412 Runsl_4861 Runella slithyformis DSM 19594 RpiB/LacA/LacB family sugar-phosphate isomerase YP_004658304.1 5611875 R 761193 CDS YP_004658305.1 338214244 10873413 5612476..5613201 1 NC_015703.1 PFAM: Possible lysine decarboxylase; TIGRFAM: TIGR00725 family protein; TIGR00730 family protein; InterPro IPR011576; KEGG: npu:Npun_R6336 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; SPTR: Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein; hypothetical protein 5613201 10873413 Runsl_4862 Runella slithyformis DSM 19594 hypothetical protein YP_004658305.1 5612476 D 761193 CDS YP_004658306.1 338214245 10873414 5613324..5613881 1 NC_015703.1 PFAM: Pyridoxamine 5'-phosphate oxidase; SPTR: Transposase IS4 family protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 5613881 10873414 Runsl_4863 Runella slithyformis DSM 19594 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_004658306.1 5613324 D 761193 CDS YP_004658307.1 338214246 10873415 5613988..5615334 1 NC_015703.1 COGs: COG2272 Carboxylesterase type B; InterPro IPR002018:IPR006311; KEGG: sli:Slin_4016 carboxylesterase type B; PFAM: Carboxylesterase, type B; SPTR: Carboxylesterase type B; hypothetical protein 5615334 10873415 Runsl_4864 Runella slithyformis DSM 19594 hypothetical protein YP_004658307.1 5613988 D 761193 CDS YP_004658308.1 338214247 10873416 complement(5615398..5617050) 1 NC_015703.1 PFAM: Carboxylesterase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; KEGG: sli:Slin_5108 hypothetical protein; SPTR: uncharacterized protein; carboxylesterase type B 5617050 10873416 Runsl_4865 Runella slithyformis DSM 19594 carboxylesterase type B YP_004658308.1 5615398 R 761193 CDS YP_004658309.1 338214248 10873417 5617226..5618407 1 NC_015703.1 COGs: COG4628 conserved hypothetical protein; InterPro IPR018668; KEGG: eta:ETA_07750 hypothetical protein; PFAM: Protein of unknown function DUF2132; SPTR: uncharacterized protein; hypothetical protein 5618407 10873417 Runsl_4866 Runella slithyformis DSM 19594 hypothetical protein YP_004658309.1 5617226 D 761193 CDS YP_004658310.1 338214249 10873418 complement(5618408..5618827) 1 NC_015703.1 PFAM: Uncharacterized conserved protein (DUF2132); COGs: COG1785 Alkaline phosphatase; InterPro IPR004129:IPR001952; KEGG: cpi:Cpin_0006 alkaline phosphatase; PFAM: Alkaline phosphatase; Glycerophosphoryl diester phosphodiesterase; SMART: Alkaline phosphatase; SPTR: Alkaline phosphatase; hypothetical protein 5618827 10873418 Runsl_4867 Runella slithyformis DSM 19594 hypothetical protein YP_004658310.1 5618408 R 761193 CDS YP_004658311.1 338214250 10873419 5619006..5620841 1 NC_015703.1 PFAM: Alkaline phosphatase; KEGG: dfe:Dfer_5078 hypothetical protein; SPTR: uncharacterized protein; alkaline phosphatase 5620841 10873419 Runsl_4868 Runella slithyformis DSM 19594 alkaline phosphatase YP_004658311.1 5619006 D 761193 CDS YP_004658312.1 338214251 10873420 complement(5620847..5621140) 1 NC_015703.1 TIGRFAM: integral membrane protein; COGs: COG1929 Glycerate kinase; InterPro IPR004381; KEGG: sli:Slin_1926 glycerate kinase; PFAM: Glycerate kinase; PRIAM: Glycerate kinase; SPTR: Glycerate kinase; TIGRFAM: Glycerate kinase; hypothetical protein 5621140 10873420 Runsl_4869 Runella slithyformis DSM 19594 hypothetical protein YP_004658312.1 5620847 R 761193 CDS YP_004658313.1 338214252 10873421 complement(5621137..5622276) 1 NC_015703.1 PFAM: Glycerate kinase; TIGRFAM: glycerate kinase; COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR001264:IPR001460; KEGG: dfe:Dfer_5029 glycosyl transferase 51; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Glycosyl transferase 51; glycerate kinase 5622276 10873421 Runsl_4870 Runella slithyformis DSM 19594 glycerate kinase YP_004658313.1 5621137 R 761193 CDS YP_004658314.1 338214253 10873422 complement(5622363..5624690) 1 NC_015703.1 PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; InterPro IPR019734; KEGG: dfe:Dfer_5028 TPR repeat-containing protein; SPTR: TPR repeat-containing protein; peptidoglycan glycosyltransferase 5624690 10873422 Runsl_4871 Runella slithyformis DSM 19594 peptidoglycan glycosyltransferase YP_004658314.1 5622363 R 761193 CDS YP_004658315.1 338214254 10873423 complement(5624877..5627102) 1 NC_015703.1 InterPro IPR013216; KEGG: gau:GAU_3119 methyltransferase; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; hypothetical protein 5627102 10873423 Runsl_4872 Runella slithyformis DSM 19594 hypothetical protein YP_004658315.1 5624877 R 761193 CDS YP_004658316.1 338214255 10873424 5627462..5628052 1 NC_015703.1 PFAM: Methyltransferase domain; KEGG: sli:Slin_1752 hypothetical protein; SPTR: uncharacterized protein; type 11 methyltransferase 5628052 10873424 Runsl_4873 Runella slithyformis DSM 19594 type 11 methyltransferase YP_004658316.1 5627462 D 761193 CDS YP_004658317.1 338214256 10873425 5628274..5628708 1 NC_015703.1 PFAM: Protein of unknown function (DUF2452); manually curated; hypothetical protein 5628708 10873425 Runsl_4874 Runella slithyformis DSM 19594 hypothetical protein YP_004658317.1 5628274 D 761193 CDS YP_004658318.1 338214257 10873427 complement(5629050..5629157) 1 NC_015703.1 KEGG: dfe:Dfer_2647 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5629157 10873427 Runsl_4876 Runella slithyformis DSM 19594 hypothetical protein YP_004658318.1 5629050 R 761193 CDS YP_004658319.1 338214258 10873428 5629227..5631974 1 NC_015703.1 KEGG: dfe:Dfer_2626 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5631974 10873428 Runsl_4877 Runella slithyformis DSM 19594 hypothetical protein YP_004658319.1 5629227 D 761193 CDS YP_004658320.1 338214259 10873429 complement(5632273..5632740) 1 NC_015703.1 KEGG: dfe:Dfer_2628 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5632740 10873429 Runsl_4878 Runella slithyformis DSM 19594 hypothetical protein YP_004658320.1 5632273 R 761193 CDS YP_004658321.1 338214260 10873430 complement(5632820..5633914) 1 NC_015703.1 COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839; KEGG: dfe:Dfer_2627 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Histidinol-phosphate transaminase; SPTR: Aminotransferase class I and II; hypothetical protein 5633914 10873430 Runsl_4879 Runella slithyformis DSM 19594 hypothetical protein YP_004658321.1 5632820 R 761193 CDS YP_004658322.1 338214261 10873431 complement(5634004..5635185) 1 NC_015703.1 PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; KEGG: dfe:Dfer_2625 hypothetical protein; SPTR: uncharacterized protein; histidinol-phosphate transaminase 5635185 10873431 Runsl_4880 Runella slithyformis DSM 19594 histidinol-phosphate transaminase YP_004658322.1 5634004 R 761193 CDS YP_004658323.1 338214262 10873432 complement(5635241..5636698) 1 NC_015703.1 COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_2624 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; hypothetical protein 5636698 10873432 Runsl_4881 Runella slithyformis DSM 19594 hypothetical protein YP_004658323.1 5635241 R 761193 CDS YP_004658324.1 338214263 10873433 complement(5636769..5639930) 1 NC_015703.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839:IPR006311; KEGG: sli:Slin_3478 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Histidinol-phosphate transaminase; SPTR: Aminotransferase class I and II; TonB-dependent receptor plug 5639930 10873433 Runsl_4882 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004658324.1 5636769 R 761193 CDS YP_004658325.1 338214264 10873434 5640794..5641975 1 NC_015703.1 PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; KEGG: sli:Slin_6127 Hedgehog/intein hint domain protein; SPTR: Hedgehog/intein hint domain protein; histidinol-phosphate transaminase 5641975 10873434 Runsl_4883 Runella slithyformis DSM 19594 histidinol-phosphate transaminase YP_004658325.1 5640794 D 761193 CDS YP_004658326.1 338214265 10873435 5641986..5642915 1 NC_015703.1 InterPro IPR000297; KEGG: dfe:Dfer_4724 PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase; hypothetical protein 5642915 10873435 Runsl_4884 Runella slithyformis DSM 19594 hypothetical protein YP_004658326.1 5641986 D 761193 CDS YP_004658327.1 338214266 10873436 complement(5643218..5645329) 1 NC_015703.1 PFAM: PPIC-type PPIASE domain; InterPro IPR005181; KEGG: sli:Slin_5096 hypothetical protein; PFAM: Protein of unknown function DUF303, acetylesterase SPTR: uncharacterized protein; PpiC-type peptidyl-prolyl cis-trans isomerase 5645329 10873436 Runsl_4885 Runella slithyformis DSM 19594 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004658327.1 5643218 R 761193 CDS YP_004658328.1 338214267 10873437 complement(5645486..5647978) 1 NC_015703.1 PFAM: Domain of unknown function (DUF303); KEGG: mba:Mbar_A0126 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5647978 10873437 Runsl_4886 Runella slithyformis DSM 19594 hypothetical protein YP_004658328.1 5645486 R 761193 CDS YP_004658329.1 338214268 10873438 complement(5648400..5649176) 1 NC_015703.1 COGs: COG4242 Cyanophycinase and related exopeptidase; KEGG: sli:Slin_4208 cyanophycinase-like protein; SPTR: Cyanophycinase-like protein; hypothetical protein 5649176 10873438 Runsl_4887 Runella slithyformis DSM 19594 hypothetical protein YP_004658329.1 5648400 R 761193 CDS YP_004658330.1 338214269 10873439 complement(5649260..5650273) 1 NC_015703.1 PFAM: Peptidase S51; TIGRFAM: cyanophycinase; COGs: COG1864 DNA/RNA endonuclease G NUC1; InterPro IPR001604:IPR020821; KEGG: ava:Ava_B0336 DNA/RNA non-specific endonuclease; PFAM: DNA/RNA non-specific endonuclease; SMART: Extracellular Endonuclease, subunit A; SPTR: DNA/RNA non-specific endonuclease; cyanophycinase 5650273 10873439 Runsl_4888 Runella slithyformis DSM 19594 cyanophycinase YP_004658330.1 5649260 R 761193 CDS YP_004658331.1 338214270 10873440 5650423..5651397 1 NC_015703.1 PFAM: DNA/RNA non-specific endonuclease; COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: dfe:Dfer_1262 protein of unknown function UPF0047; PFAM: Uncharacterised protein family UPF0047; SPTR: uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0047; DNA/RNA non-specific endonuclease 5651397 10873440 Runsl_4889 Runella slithyformis DSM 19594 DNA/RNA non-specific endonuclease YP_004658331.1 5650423 D 761193 CDS YP_004658332.1 338214271 10873441 complement(5651414..5651836) 1 NC_015703.1 PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme; KEGG: dmr:Deima_1581 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5651836 10873441 Runsl_4890 Runella slithyformis DSM 19594 hypothetical protein YP_004658332.1 5651414 R 761193 CDS YP_004658333.1 338214272 10873442 5652271..5652639 1 NC_015703.1 hypothetical protein 5652639 10873442 Runsl_4891 Runella slithyformis DSM 19594 hypothetical protein YP_004658333.1 5652271 D 761193 CDS YP_004658334.1 338214273 10873443 complement(5652953..5653456) 1 NC_015703.1 InterPro IPR001387; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; hypothetical protein 5653456 10873443 Runsl_4892 Runella slithyformis DSM 19594 hypothetical protein YP_004658334.1 5652953 R 761193 CDS YP_004658335.1 338214274 10873444 complement(5653596..5653790) 1 NC_015703.1 PFAM: Helix-turn-helix; KEGG: sli:Slin_3285 hypothetical protein; SPTR: uncharacterized protein; helix-turn-helix domain-containing protein 5653790 10873444 Runsl_4893 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004658335.1 5653596 R 761193 CDS YP_004658336.1 338214275 10873445 complement(5654018..5654257) 1 NC_015703.1 KEGG: sli:Slin_3094 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5654257 10873445 Runsl_4894 Runella slithyformis DSM 19594 hypothetical protein YP_004658336.1 5654018 R 761193 CDS YP_004658337.1 338214276 10873446 complement(5654323..5655471) 1 NC_015703.1 COGs: COG3378 ATPase; InterPro IPR014818:IPR006500; KEGG: sli:Slin_3095 P4 family phage/plasmid primase; PFAM: Phage/plasmid primase, P4, C-terminal; SPTR: Phage/plasmid primase, P4 family; TIGRFAM: DNA primase, phage/plasmid; hypothetical protein 5655471 10873446 Runsl_4895 Runella slithyformis DSM 19594 hypothetical protein YP_004658337.1 5654323 R 761193 CDS YP_004658338.1 338214277 10873447 complement(5655640..5657223) 1 NC_015703.1 PFAM: D5 N terminal like; TIGRFAM: phage/plasmid primase, P4 family, C-terminal domain; phage/plasmid primase, P4 family 5657223 10873447 Runsl_4896 Runella slithyformis DSM 19594 phage/plasmid primase, P4 family YP_004658338.1 5655640 R 761193 CDS YP_004658339.1 338214278 10873448 complement(5657482..5657682) 1 NC_015703.1 KEGG: cat:CA2559_03950 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5657682 10873448 Runsl_4897 Runella slithyformis DSM 19594 hypothetical protein YP_004658339.1 5657482 R 761193 CDS YP_004658340.1 338214279 10873449 complement(5657672..5658025) 1 NC_015703.1 KEGG: sli:Slin_3282 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5658025 10873449 Runsl_4898 Runella slithyformis DSM 19594 hypothetical protein YP_004658340.1 5657672 R 761193 CDS YP_004658341.1 338214280 10873450 complement(5658154..5659518) 1 NC_015703.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: sli:Slin_3281 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Mobilizable transposon, int protein; hypothetical protein 5659518 10873450 Runsl_4899 Runella slithyformis DSM 19594 hypothetical protein YP_004658341.1 5658154 R 761193 CDS YP_004658342.1 338214281 10873451 complement(5659534..5660676) 1 NC_015703.1 PFAM: Phage integrase; InterPro IPR010093; KEGG: pdi:BDI_2123 transposase in mobilizable transposon, TnpA protein; SPTR: Transposase in mobilizable transposon, tnpA protein; TIGRFAM: Excisionase/Xis, DNA-binding; integrase 5660676 10873451 Runsl_4900 Runella slithyformis DSM 19594 integrase YP_004658342.1 5659534 R 761193 CDS YP_004658343.1 338214282 10873452 complement(5660697..5661428) 1 NC_015703.1 TIGRFAM: DNA binding domain, excisionase; COGs: COG0486 GTPase; HAMAP: tRNA modification GTPase TrmE; InterPro IPR004520:IPR018948:IPR002917:IPR005225; KEGG: dfe:Dfer_0089 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related; SPTR: tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; excisionase 5661428 10873452 Runsl_4901 Runella slithyformis DSM 19594 excisionase YP_004658343.1 5660697 R 761193 CDS YP_004658344.1 338214283 10873453 complement(5661663..5662988) 1 NC_015703.1 PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: small GTP-binding protein domain; tRNA modification GTPase TrmE; KEGG: lby:Lbys_2700 hypothetical protein; SPTR: uncharacterized protein; tRNA modification GTPase mnmE 5662988 10873453 Runsl_4902 Runella slithyformis DSM 19594 tRNA modification GTPase mnmE YP_004658344.1 5661663 R 761193 CDS YP_004658345.1 338214284 10873454 complement(5662991..5663194) 1 NC_015703.1 KEGG: sli:Slin_1630 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5663194 10873454 Runsl_4903 Runella slithyformis DSM 19594 hypothetical protein YP_004658345.1 5662991 R 761193 CDS YP_004658346.1 338214285 10873455 complement(5663283..5664041) 1 NC_015703.1 KEGG: dfe:Dfer_0082 LVIVD repeat protein; SPTR: LVIVD repeat protein; hypothetical protein 5664041 10873455 Runsl_4904 Runella slithyformis DSM 19594 hypothetical protein YP_004658346.1 5663283 R 761193 CDS YP_004658347.1 338214286 10873456 complement(5664038..5664799) 1 NC_015703.1 KEGG: dfe:Dfer_0081 LVIVD repeat protein; SPTR: LVIVD repeat protein; LVIVD repeat-containing protein 5664799 10873456 Runsl_4905 Runella slithyformis DSM 19594 LVIVD repeat-containing protein YP_004658347.1 5664038 R 761193 CDS YP_004658348.1 338214287 10873457 complement(5664805..5665350) 1 NC_015703.1 InterPro IPR004843; KEGG: dfe:Dfer_4802 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; LVIVD repeat-containing protein 5665350 10873457 Runsl_4906 Runella slithyformis DSM 19594 LVIVD repeat-containing protein YP_004658348.1 5664805 R 761193 CDS YP_004658349.1 338214288 10873458 complement(5665390..5666619) 1 NC_015703.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_2542 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein; manually curated; metallophosphoesterase 5666619 10873458 Runsl_4907 Runella slithyformis DSM 19594 metallophosphoesterase YP_004658349.1 5665390 R 761193 CDS YP_004658350.1 338214289 10873459 complement(5666667..5668691) 1 NC_015703.1 PFAM: WD40-like Beta Propeller Repeat; OmpA family; KEGG: rhi:NGR_b13550 hypothetical protein; SPTR: uncharacterized protein; manually curated; OmpA/MotB domain-containing protein 5668691 10873459 Runsl_4908 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004658350.1 5666667 R 761193 CDS YP_004658351.1 338214290 10873460 complement(5668815..5670182) 1 NC_015703.1 COGs: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase beta subunit; InterPro IPR011766; KEGG: gpb:HDN1F_09560 2-ketoglutarate: NADP oxidoreductase, beta subunit; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: 2-oxoglutarate synthase; SPTR: 2-ketoglutarate: NADP oxidoreductase, beta subunit; hypothetical protein 5670182 10873460 Runsl_4909 Runella slithyformis DSM 19594 hypothetical protein YP_004658351.1 5668815 R 761193 CDS YP_004658352.1 338214291 10873461 complement(5670415..5671467) 1 NC_015703.1 PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: cch:Cag_1441 hypothetical protein; PFAM: Filamentation induced by cAMP/death on curing, related; SPTR: uncharacterized protein; 2-oxoglutarate synthase 5671467 10873461 Runsl_4910 Runella slithyformis DSM 19594 2-oxoglutarate synthase YP_004658352.1 5670415 R 761193 CDS YP_004658353.1 338214292 10873462 complement(5671588..5672709) 1 NC_015703.1 PFAM: Fic/DOC family; Fic family protein 5672709 10873462 Runsl_4911 Runella slithyformis DSM 19594 Fic family protein YP_004658353.1 5671588 R 761193 CDS YP_004658354.1 338214293 10873463 complement(5672899..5673381) 1 NC_015703.1 COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR019752:IPR002880; KEGG: gpb:HDN1F_09550 2-ketoglutarate: nadp oxidoreductase, alpha subunit; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase; PRIAM: 2-oxoglutarate synthase; SPTR: 2-ketoglutarate: nadp oxidoreductase, alpha subunit; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, alpha subunit; hypothetical protein 5673381 10873463 Runsl_4912 Runella slithyformis DSM 19594 hypothetical protein YP_004658354.1 5672899 R 761193 CDS YP_004658355.1 338214294 10873464 complement(5673505..5675334) 1 NC_015703.1 PFAM: domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, alpha subunit; COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR013027:IPR001450; KEGG: gpb:HDN1F_09540 2-ketoglutarate: NADP oxidoreductase, gamma subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; PRIAM: Glutamate synthase (NADPH); SPTR: 4Fe-4S binding domain protein; 2-oxoacid:acceptor oxidoreductase subunit alpha 5675334 10873464 Runsl_4913 Runella slithyformis DSM 19594 2-oxoacid:acceptor oxidoreductase subunit alpha YP_004658355.1 5673505 R 761193 CDS YP_004658356.1 338214295 10873465 complement(5675425..5677221) 1 NC_015703.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; COGs: COG2273 Beta-glucanase/Beta-glucan synthetase; InterPro IPR004129:IPR000757; KEGG: cly:Celly_2438 licheninase; PFAM: Glycoside hydrolase, family 16; Glycerophosphoryl diester phosphodiesterase; PRIAM: Licheninase; SPTR: Glycoside hydrolase 16; glutamate synthase 5677221 10873465 Runsl_4914 Runella slithyformis DSM 19594 glutamate synthase YP_004658356.1 5675425 R 761193 CDS YP_004658357.1 338214296 10873466 5677617..5679125 1 NC_015703.1 PFAM: Glycerophosphoryl diester phosphodiesterase; Glycosyl hydrolases family 16; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: lby:Lbys_2250 RNA polymerase, sigma-24 subunit, ecf subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; licheninase 5679125 10873466 Runsl_4915 Runella slithyformis DSM 19594 licheninase YP_004658357.1 5677617 D 761193 CDS YP_004658358.1 338214297 10873467 5679307..5679864 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: lby:Lbys_2249 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; ECF subfamily RNA polymerase sigma-24 subunit 5679864 10873467 Runsl_4916 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004658358.1 5679307 D 761193 CDS YP_004658359.1 338214298 10873468 5679886..5680884 1 NC_015703.1 PFAM: FecR protein; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1791 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; anti-FecI sigma factor FecR 5680884 10873468 Runsl_4917 Runella slithyformis DSM 19594 anti-FecI sigma factor FecR YP_004658359.1 5679886 D 761193 CDS YP_004658360.1 338214299 10873469 5681002..5684541 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: zpr:ZPR_0682 outer hypothetical protein, probably involved in nutrient binding; PFAM: RagB/SusD; SPTR: outer membrane protein, probably involved in nutrient binding; TonB-dependent receptor plug 5684541 10873469 Runsl_4918 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004658360.1 5681002 D 761193 CDS YP_004658361.1 338214300 10873470 5684566..5686206 1 NC_015703.1 PFAM: SusD family; RagB/SusD domain-containing protein 5686206 10873470 Runsl_4919 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004658361.1 5684566 D 761193 CDS YP_004658362.1 338214301 10873471 5686220..5686909 1 NC_015703.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: pfo:Pfl01_0902 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold; hypothetical protein 5686909 10873471 Runsl_4920 Runella slithyformis DSM 19594 hypothetical protein YP_004658362.1 5686220 D 761193 CDS YP_004658363.1 338214302 10873472 5687008..5687883 1 NC_015703.1 PFAM: alpha/beta hydrolase fold; KEGG: aae:aq_1684 alginate synthesis-related protein; SPTR: uncharacterized protein; alpha/beta hydrolase 5687883 10873472 Runsl_4921 Runella slithyformis DSM 19594 alpha/beta hydrolase YP_004658363.1 5687008 D 761193 CDS YP_004658364.1 338214303 10873473 5687912..5689075 1 NC_015703.1 COGs: COG1874 Beta-galactosidase; KEGG: tle:Tlet_0218 glycoside hydrolase 42 protein; SPTR: Glycoside hydrolase 42 domain protein; hypothetical protein 5689075 10873473 Runsl_4922 Runella slithyformis DSM 19594 hypothetical protein YP_004658364.1 5687912 D 761193 CDS YP_004658365.1 338214304 10873474 5689087..5691285 1 NC_015703.1 PFAM: Beta-galactosidase trimerisation domain; Beta-galactosidase; InterPro IPR012944; KEGG: sli:Slin_2992 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; hypothetical protein 5691285 10873474 Runsl_4923 Runella slithyformis DSM 19594 hypothetical protein YP_004658365.1 5689087 D 761193 CDS YP_004658366.1 338214305 10873475 complement(5691396..5693168) 1 NC_015703.1 PFAM: SusD family; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1460 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; RagB/SusD domain-containing protein 5693168 10873475 Runsl_4924 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004658366.1 5691396 R 761193 CDS YP_004658367.1 338214306 10873476 complement(5693253..5696783) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: lby:Lbys_2249 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; TonB-dependent receptor plug 5696783 10873476 Runsl_4925 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004658367.1 5693253 R 761193 CDS YP_004658368.1 338214307 10873477 complement(5696834..5697811) 1 NC_015703.1 PFAM: FecR protein; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284:IPR014327; KEGG: lby:Lbys_2250 RNA polymerase, sigma-24 subunit, ecf subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; anti-FecI sigma factor FecR 5697811 10873477 Runsl_4926 Runella slithyformis DSM 19594 anti-FecI sigma factor FecR YP_004658368.1 5696834 R 761193 CDS YP_004658369.1 338214308 10873478 complement(5697824..5698381) 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR007630:IPR014284; KEGG: fjo:Fjoh_2896 ECF subfamily RNA polymerase sigma-24 factor; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; SPTR: ECF subfamily RNA polymerase sigma-24 subunit; TIGRFAM: RNA polymerase sigma-70; ECF subfamily RNA polymerase sigma-24 subunit 5698381 10873478 Runsl_4927 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004658369.1 5697824 R 761193 CDS YP_004658370.1 338214309 10873479 5698941..5699534 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; ECF subfamily RNA polymerase sigma-24 subunit 5699534 10873479 Runsl_4928 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004658370.1 5698941 D 761193 CDS YP_004658371.1 338214310 10873480 5699612..5700715 1 NC_015703.1 PFAM: FecR protein; InterPro IPR011662:IPR012910:IPR000531; KEGG: shg:Sph21_4333 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; anti-FecI sigma factor FecR 5700715 10873480 Runsl_4929 Runella slithyformis DSM 19594 anti-FecI sigma factor FecR YP_004658371.1 5699612 D 761193 CDS YP_004658372.1 338214311 10873481 5700907..5704308 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: shg:Sph21_4332 RagB/SusD domain-containing protein; PFAM: RagB/SusD; SPTR: uncharacterized protein; TonB-dependent receptor plug 5704308 10873481 Runsl_4930 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004658372.1 5700907 D 761193 CDS YP_004658373.1 338214312 10873482 5704328..5706040 1 NC_015703.1 PFAM: SusD family; KEGG: sli:Slin_4316 hypothetical protein; SPTR: uncharacterized protein; RagB/SusD domain-containing protein 5706040 10873482 Runsl_4931 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004658373.1 5704328 D 761193 CDS YP_004658374.1 338214313 10873483 5706162..5708648 1 NC_015703.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR007630:IPR014284; KEGG: sli:Slin_6565 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; hypothetical protein 5708648 10873483 Runsl_4932 Runella slithyformis DSM 19594 hypothetical protein YP_004658374.1 5706162 D 761193 CDS YP_004658375.1 338214314 10873484 5709034..5709645 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: dfe:Dfer_2117 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; ECF subfamily RNA polymerase sigma-24 subunit 5709645 10873484 Runsl_4933 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004658375.1 5709034 D 761193 CDS YP_004658376.1 338214315 10873485 5709668..5710762 1 NC_015703.1 PFAM: FecR protein; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_2219 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; anti-FecI sigma factor FecR 5710762 10873485 Runsl_4934 Runella slithyformis DSM 19594 anti-FecI sigma factor FecR YP_004658376.1 5709668 D 761193 CDS YP_004658377.1 338214316 10873486 5710930..5714295 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012944; KEGG: dfe:Dfer_2261 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: uncharacterized protein; TonB-dependent receptor plug 5714295 10873486 Runsl_4935 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004658377.1 5710930 D 761193 CDS YP_004658378.1 338214317 10873487 5714316..5715932 1 NC_015703.1 PFAM: SusD family; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: dfe:Dfer_4489 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; RagB/SusD domain-containing protein 5715932 10873487 Runsl_4936 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004658378.1 5714316 D 761193 CDS YP_004658379.1 338214318 10873488 5715998..5717317 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sli:Slin_2652 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; oxidoreductase domain-containing protein 5717317 10873488 Runsl_4937 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004658379.1 5715998 D 761193 CDS YP_004658380.1 338214319 10873489 5717332..5718180 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; xylose isomerase domain-containing protein 5718180 10873489 Runsl_4938 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004658380.1 5717332 D 761193 CDS YP_004658381.1 338214320 10873490 complement(5718241..5718696) 1 NC_015703.1 COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR002792:IPR010280:IPR001566; KEGG: psn:Pedsa_3674 23S rRNA m(5)U-1939 methyltransferase; PFAM: (Uracil-5)-methyltransferase; Deoxyribonuclease/rho motif-related TRAM; SPTR: 23S rRNA m(5)U-1939 methyltransferase; TIGRFAM: 23S rRNA methyltransferase/RumA; hypothetical protein 5718696 10873490 Runsl_4939 Runella slithyformis DSM 19594 hypothetical protein YP_004658381.1 5718241 R 761193 CDS YP_004658382.1 338214321 10873491 complement(5718776..5720347) 1 NC_015703.1 PFAM: TRAM domain; tRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: sli:Slin_1687 hypothetical protein; SPTR: uncharacterized protein; TrmA family RNA methyltransferase 5720347 10873491 Runsl_4940 Runella slithyformis DSM 19594 TrmA family RNA methyltransferase YP_004658382.1 5718776 R 761193 CDS YP_004658383.1 338214322 10873492 5720372..5722603 1 NC_015703.1 COGs: COG0657 Esterase/lipase; KEGG: cat:CA2559_11223 probable lipase; SPTR: lipase; hypothetical protein 5722603 10873492 Runsl_4941 Runella slithyformis DSM 19594 hypothetical protein YP_004658383.1 5720372 D 761193 CDS YP_004658384.1 338214323 10873493 complement(5722620..5723462) 1 NC_015703.1 PFAM: alpha/beta hydrolase fold; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_5738 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; hypothetical protein 5723462 10873493 Runsl_4942 Runella slithyformis DSM 19594 hypothetical protein YP_004658384.1 5722620 R 761193 CDS YP_004658385.1 338214324 10873494 5723705..5724478 1 NC_015703.1 PFAM: short chain dehydrogenase; KEGG: sli:Slin_1685 hypothetical protein; SPTR: uncharacterized protein; 3-oxoacyl-ACP reductase 5724478 10873494 Runsl_4943 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004658385.1 5723705 D 761193 CDS YP_004658386.1 338214325 10873495 5724568..5725269 1 NC_015703.1 InterPro IPR010895; KEGG: sli:Slin_2026 CHRD domain containing protein; PFAM: CHRD; SMART: CHRD; SPTR: CHRD domain containing protein; hypothetical protein 5725269 10873495 Runsl_4944 Runella slithyformis DSM 19594 hypothetical protein YP_004658386.1 5724568 D 761193 CDS YP_004658387.1 338214326 10873496 5725350..5725826 1 NC_015703.1 PFAM: CHRD domain; COGs: COG1048 Aconitase A; InterPro IPR001030:IPR000573:IPR006248; KEGG: chu:CHU_2223 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; SPTR: Aconitase; TIGRFAM: Aconitase, mitochondrial-like; CHRD domain-containing protein 5725826 10873496 Runsl_4945 Runella slithyformis DSM 19594 CHRD domain-containing protein YP_004658387.1 5725350 D 761193 CDS YP_004658388.1 338214327 10873497 complement(5725969..5728242) 1 NC_015703.1 PFAM: Aconitase C-terminal domain; Aconitase (aconitate hydratase); TIGRFAM: aconitate hydratase, mitochondrial; aconitate hydratase 5728242 10873497 Runsl_4946 Runella slithyformis DSM 19594 aconitate hydratase YP_004658388.1 5725969 R 761193 CDS YP_004658389.1 338214328 10873498 complement(5728445..5728942) 1 NC_015703.1 COGs: COG1524 Uncharacterized protein of the AP superfamily; InterPro IPR002591; KEGG: sli:Slin_6200 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase; hypothetical protein 5728942 10873498 Runsl_4947 Runella slithyformis DSM 19594 hypothetical protein YP_004658389.1 5728445 R 761193 CDS YP_004658390.1 338214329 10873499 complement(5729018..5730262) 1 NC_015703.1 PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase; COGs: COG0855 Polyphosphate kinase; HAMAP: Polyphosphate kinase; InterPro IPR003414; KEGG: sli:Slin_2997 polyphosphate kinase; PFAM: Polyphosphate kinase; PRIAM: Polyphosphate kinase; SPTR: Polyphosphate kinase; TIGRFAM: polyphosphate kinase 1; type I phosphodiesterase/nucleotide pyrophosphatase 5730262 10873499 Runsl_4948 Runella slithyformis DSM 19594 type I phosphodiesterase/nucleotide pyrophosphatase YP_004658390.1 5729018 R 761193 CDS YP_004658391.1 338214330 10873500 complement(5730259..5732580) 1 NC_015703.1 PFAM: Polyphosphate kinase; TIGRFAM: polyphosphate kinase 1; polyphosphate kinase 5732580 10873500 Runsl_4949 Runella slithyformis DSM 19594 polyphosphate kinase YP_004658391.1 5730259 R 761193 CDS YP_004658392.1 338214331 10873501 5732681..5732848 1 NC_015703.1 COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterProIPR003594:IPR001241:IPR011557:IPR013506:IPR 006171:IPR002288; KEGG: dfe:Dfer_4986 DNA gyrase, B subunit; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like; SPTR: DNA gyrase subunit B; TIGRFAM: DNA gyrase, subunit B; hypothetical protein 5732848 10873501 Runsl_4950 Runella slithyformis DSM 19594 hypothetical protein YP_004658392.1 5732681 D 761193 CDS YP_004658393.1 338214332 10873502 complement(5732914..5734884) 1 NC_015703.1 PFAM: Toprim domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA gyrase, B subunit; KEGG: phe:Phep_4112 tetratricopeptide domain-containing protein; SPTR: Tetratricopeptide domain protein; DNA gyrase subunit B 5734884 10873502 Runsl_4951 Runella slithyformis DSM 19594 DNA gyrase subunit B YP_004658393.1 5732914 R 761193 CDS YP_004658394.1 338214333 10873503 complement(5735258..5738218) 1 NC_015703.1 KEGG: sli:Slin_3425 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5738218 10873503 Runsl_4952 Runella slithyformis DSM 19594 hypothetical protein YP_004658394.1 5735258 R 761193 CDS YP_004658395.1 338214334 10873504 5738311..5738919 1 NC_015703.1 KEGG: dfe:Dfer_4738 ASPIC/UnbV domain protein; SPTR: ASPIC/UnbV domain protein; hypothetical protein 5738919 10873504 Runsl_4953 Runella slithyformis DSM 19594 hypothetical protein YP_004658395.1 5738311 D 761193 CDS YP_004658396.1 338214335 10873505 complement(5739024..5742326) 1 NC_015703.1 PFAM: ASPIC and UnbV; KEGG: sli:Slin_3979 hypothetical protein; SPTR: uncharacterized protein; ASPIC/UnbV domain-containing protein 5742326 10873505 Runsl_4954 Runella slithyformis DSM 19594 ASPIC/UnbV domain-containing protein YP_004658396.1 5739024 R 761193 CDS YP_004658397.1 338214336 10873506 complement(5742406..5743998) 1 NC_015703.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_3978 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; hypothetical protein 5743998 10873506 Runsl_4955 Runella slithyformis DSM 19594 hypothetical protein YP_004658397.1 5742406 R 761193 CDS YP_004658398.1 338214337 10873507 complement(5744030..5747137) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; manually curated; TonB-dependent receptor 5747137 10873507 Runsl_4956 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004658398.1 5744030 R 761193 CDS YP_004658399.1 338214338 10873509 complement(5747707..5748801) 1 NC_015703.1 PFAM: Membrane dipeptidase (Peptidase M19); COGs: COG4850 conserved hypothetical protein; InterPro IPR019236; KEGG: phe:Phep_4163 hypothetical protein; PFAM: Protein of unknown function DUF2183; SPTR: uncharacterized protein; peptidase M19 5748801 10873509 Runsl_4958 Runella slithyformis DSM 19594 peptidase M19 YP_004658399.1 5747707 R 761193 CDS YP_004658400.1 338214339 10873510 complement(5748865..5749854) 1 NC_015703.1 PFAM: Uncharacterized conserved protein (DUF2183); COGs: COG1597 Sphingosine kinase; InterPro IPR001206; KEGG: phe:Phep_4164 diacylglycerol kinase catalytic subunit; PFAM: Diacylglycerol kinase, catalytic region; SMART: Diacylglycerol kinase, catalytic region; SPTR: uncharacterized protein; hypothetical protein 5749854 10873510 Runsl_4959 Runella slithyformis DSM 19594 hypothetical protein YP_004658400.1 5748865 R 761193 CDS YP_004658401.1 338214340 10873511 5749905..5750798 1 NC_015703.1 PFAM: Diacylglycerol kinase catalytic domain; Diacylglycerol kinase accessory domain; KEGG: sli:Slin_2995 hypothetical protein; SPTR: uncharacterized protein; diacylglycerol kinase catalytic subunit 5750798 10873511 Runsl_4960 Runella slithyformis DSM 19594 diacylglycerol kinase catalytic subunit YP_004658401.1 5749905 D 761193 CDS YP_004658402.1 338214341 10873512 complement(5750950..5751324) 1 NC_015703.1 COGs: COG0686 Alanine dehydrogenase; InterPro IPR007886:IPR007698; KEGG: sli:Slin_2994 alanine dehydrogenase/PNT domain protein; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal; PRIAM: Alanine dehydrogenase; SPTR: Alanine dehydrogenase/PNT domain protein; hypothetical protein 5751324 10873512 Runsl_4961 Runella slithyformis DSM 19594 hypothetical protein YP_004658402.1 5750950 R 761193 CDS YP_004658403.1 338214342 10873513 complement(5751462..5752673) 1 NC_015703.1 PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase; COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: sli:Slin_2993 hypothetical protein; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria; SPTR: uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; alanine dehydrogenase 5752673 10873513 Runsl_4962 Runella slithyformis DSM 19594 alanine dehydrogenase YP_004658403.1 5751462 R 761193 CDS YP_004658404.1 338214343 10873514 complement(5752696..5753127) 1 NC_015703.1 PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family; hypothetical protein 5753127 10873514 Runsl_4963 Runella slithyformis DSM 19594 hypothetical protein YP_004658404.1 5752696 R 761193 CDS YP_004658405.1 338214344 10873515 complement(5753141..5753317) 1 NC_015703.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: dfe:Dfer_4956 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein; hypothetical protein 5753317 10873515 Runsl_4964 Runella slithyformis DSM 19594 hypothetical protein YP_004658405.1 5753141 R 761193 CDS YP_004658406.1 338214345 10873516 5753574..5754614 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; KEGG: sli:Slin_1872 hypothetical protein; SPTR: uncharacterized protein; oxidoreductase domain-containing protein 5754614 10873516 Runsl_4965 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004658406.1 5753574 D 761193 CDS YP_004658407.1 338214346 10873517 complement(5754708..5756069) 1 NC_015703.1 PFAM: Protein of unknown function (DUF3570); SPTR: uncharacterized protein; hypothetical protein 5756069 10873517 Runsl_4966 Runella slithyformis DSM 19594 hypothetical protein YP_004658407.1 5754708 R 761193 CDS YP_004658408.1 338214347 10873518 5756601..5757470 1 NC_015703.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_1228 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Glucose 1-dehydrogenase; SPTR: Short-chain dehydrogenase/reductase SDR; hypothetical protein 5757470 10873518 Runsl_4967 Runella slithyformis DSM 19594 hypothetical protein YP_004658408.1 5756601 D 761193 CDS YP_004658409.1 338214348 10873519 complement(5757541..5758338) 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG2909 ATP-dependent transcriptional regulator protein; InterPro IPR000792; KEGG: aba:Acid345_2902 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: Transcriptional regulator, LuxR family; glucose 1-dehydrogenase 5758338 10873519 Runsl_4968 Runella slithyformis DSM 19594 glucose 1-dehydrogenase YP_004658409.1 5757541 R 761193 CDS YP_004658410.1 338214349 10873520 5758386..5758868 1 NC_015703.1 PFAM: Bacterial regulatory proteins, luxR family; KEGG: aba:Acid345_2901 hypothetical protein; SPTR: uncharacterized protein; LuxR family transcriptional regulator 5758868 10873520 Runsl_4969 Runella slithyformis DSM 19594 LuxR family transcriptional regulator YP_004658410.1 5758386 D 761193 CDS YP_004658411.1 338214350 10873521 5758981..5759502 1 NC_015703.1 COGs: COG2378 transcriptional regulator protein; KEGG: cpi:Cpin_1199 transcriptional regulator; SPTR: transcriptional regulator protein; hypothetical protein 5759502 10873521 Runsl_4970 Runella slithyformis DSM 19594 hypothetical protein YP_004658411.1 5758981 D 761193 CDS YP_004658412.1 338214351 10873522 complement(5759779..5760801) 1 NC_015703.1 KEGG: sli:Slin_3847 CRISPR-associated protein Cas6; SPTR: CRISPR-associated protein Cas6; transcriptional regulator 5760801 10873522 Runsl_4971 Runella slithyformis DSM 19594 transcriptional regulator YP_004658412.1 5759779 R 761193 CDS YP_004658413.1 338214352 10873523 5760970..5761401 1 NC_015703.1 COGs: COG1583 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR010156; KEGG: cts:Ctha_1732 CRISPR-associated protein Cas6; SPTR: CRISPR-associated protein Cas6; TIGRFAM: CRISPR-associated protein, Cas6; hypothetical protein 5761401 10873523 Runsl_4972 Runella slithyformis DSM 19594 hypothetical protein YP_004658413.1 5760970 D 761193 CDS YP_004658414.1 338214353 10873524 5761430..5762092 1 NC_015703.1 PFAM: CRISPR associated protein Cas6; TIGRFAM: CRISPR-associated endoribonuclease Cas6; KEGG: cts:Ctha_1731 hypothetical protein; SPTR: uncharacterized protein; CRISPR-associated protein Cas6 5762092 10873524 Runsl_4973 Runella slithyformis DSM 19594 CRISPR-associated protein Cas6 YP_004658414.1 5761430 D 761193 CDS YP_004658415.1 338214354 10873525 5762101..5762682 1 NC_015703.1 COGs: COG1203 helicase; InterProIPR001650:IPR006675:IPR006483:IPR006474:IPR 006674; KEGG: cts:Ctha_1730 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; DNA/RNA helicase, C-terminal; SMART: DNA/RNA helicase, C-terminal; SPTR: Metal dependent phosphohydrolase; TIGRFAM: Helicase Cas3, CRISPR-associated, core; CRISPR-associated HD domain; HDIG; hypothetical protein 5762682 10873525 Runsl_4974 Runella slithyformis DSM 19594 hypothetical protein YP_004658415.1 5762101 D 761193 CDS YP_004658416.1 338214355 10873526 5762682..5764832 1 NC_015703.1 PFAM: HD domain; DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated endonuclease Cas3-HD; uncharacterized domain HDIG; KEGG: cts:Ctha_1729 hypothetical protein; SPTR: uncharacterized protein; metal dependent phosphohydrolase 5764832 10873526 Runsl_4975 Runella slithyformis DSM 19594 metal dependent phosphohydrolase YP_004658416.1 5762682 D 761193 CDS YP_004658417.1 338214356 10873527 5764829..5766229 1 NC_015703.1 COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated; hypothetical protein 5766229 10873527 Runsl_4976 Runella slithyformis DSM 19594 hypothetical protein YP_004658417.1 5764829 D 761193 CDS YP_004658418.1 338214357 10873528 join(5766256..5766720,5766722..5767267) 1 NC_015703.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; KEGG: cts:Ctha_1728 hypothetical protein; SPTR: uncharacterized protein; transposase 5767267 10873528 Runsl_4977 Runella slithyformis DSM 19594 transposase YP_004658418.1 5766256 D 761193 CDS YP_004658419.1 338214358 10873529 5767376..5768431 1 NC_015703.1 hypothetical protein 5768431 10873529 Runsl_4978 Runella slithyformis DSM 19594 hypothetical protein YP_004658419.1 5767376 D 761193 CDS YP_004658420.1 338214359 10873530 5768488..5768979 1 NC_015703.1 COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: rlg:Rleg_5475 AAA ATPase; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; hypothetical protein 5768979 10873530 Runsl_4979 Runella slithyformis DSM 19594 hypothetical protein YP_004658420.1 5768488 D 761193 CDS YP_004658421.1 338214360 10873531 5769050..5770210 1 NC_015703.1 COGs: COG1468 RecB family exonuclease; InterPro IPR013343; KEGG: osp:Odosp_1295 CRISPR-associated protein Cas4; PFAM: CRISPR-associated protein Cas4; SPTR: CRISPR-associated exonuclease, Cas4 family; TIGRFAM: CRISPR-associated protein Cas4; ATPase AAA 5770210 10873531 Runsl_4980 Runella slithyformis DSM 19594 ATPase AAA YP_004658421.1 5769050 D 761193 CDS YP_004658422.1 338214361 10873532 5770207..5770749 1 NC_015703.1 PFAM: Domain of unknown function DUF83; TIGRFAM: CRISPR-associated protein Cas4; COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR019858:IPR002729; KEGG: osp:Odosp_1294 CRISPR-associated protein Cas1; PFAM: CRISPR-associated protein Cas1; SPTR: CRISPR-associated protein Cas1; TIGRFAM: CRISPR-associated protein Cas1, HMARI/TNEAP subtype; CRISPR-associated protein Cas1; CRISPR-associated protein Cas4 5770749 10873532 Runsl_4981 Runella slithyformis DSM 19594 CRISPR-associated protein Cas4 YP_004658422.1 5770207 D 761193 CDS YP_004658423.1 338214362 10873533 5770746..5771750 1 NC_015703.1 PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP; CRISPR-associated endonuclease Cas1; COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR003799; KEGG: pgi:PG2013 CRISPR-associated Cas2 family protein; SPTR: CRISPR-associated protein Cas2; TIGRFAM: Protein of unknown function DUF196; CRISPR-associated protein Cas1 5771750 10873533 Runsl_4982 Runella slithyformis DSM 19594 CRISPR-associated protein Cas1 YP_004658423.1 5770746 D 761193 CDS YP_004658424.1 338214363 10873534 5771790..5772053 1 NC_015703.1 PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2; InterPro IPR001387; KEGG: dfe:Dfer_2028 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; CRISPR-associated protein Cas2 5772053 10873534 Runsl_4983 Runella slithyformis DSM 19594 CRISPR-associated protein Cas2 YP_004658424.1 5771790 D 761193 CDS YP_004658425.1 338214364 10873535 complement(5784568..5785389) 1 NC_015703.1 PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein 5785389 10873535 Runsl_4984 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004658425.1 5784568 R 761193 CDS YP_004658426.1 338214365 10873536 complement(5785408..5785533) 1 NC_015703.1 InterPro IPR019096; PFAM: YopX protein; hypothetical protein 5785533 10873536 Runsl_4985 Runella slithyformis DSM 19594 hypothetical protein YP_004658426.1 5785408 R 761193 CDS YP_004658427.1 338214366 10873537 5785678..5786157 1 NC_015703.1 PFAM: YopX protein; COGs: COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenase; InterPro IPR000262; KEGG: rxy:Rxyl_1052 lactate 2-monooxygenase; PFAM: FMN-dependent dehydrogenase; PRIAM: Lactate 2-monooxygenase; SPTR: Isopentenyl-diphosphate delta-isomerase II 2; hypothetical protein 5786157 10873537 Runsl_4986 Runella slithyformis DSM 19594 hypothetical protein YP_004658427.1 5785678 D 761193 CDS YP_004658428.1 338214367 10873538 complement(5786172..5787428) 1 NC_015703.1 PFAM: FMN-dependent dehydrogenase; COGs: COG4539 membrane protein; InterPro IPR009305; KEGG: mtt:Ftrac_0080 hypothetical protein; SPTR: Membrane protein; Lactate 2-monooxygenase 5787428 10873538 Runsl_4987 Runella slithyformis DSM 19594 Lactate 2-monooxygenase YP_004658428.1 5786172 R 761193 CDS YP_004658429.1 338214368 10873539 complement(5787524..5787988) 1 NC_015703.1 PFAM: Protein of unknown function (DUF962); COGs: COG4870 Cysteine protease; InterPro IPR000668; KEGG: psb:Psyr_2881 peptidase C1A, papain; PFAM: Peptidase C1A, papain C-terminal; SMART: Peptidase C1A, papain C-terminal; SPTR: Papain family cysteine protease; hypothetical protein 5787988 10873539 Runsl_4988 Runella slithyformis DSM 19594 hypothetical protein YP_004658429.1 5787524 R 761193 CDS YP_004658430.1 338214369 10873540 complement(5788118..5789218) 1 NC_015703.1 PFAM: Papain family cysteine protease; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_3987 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; peptidase C1A papain 5789218 10873540 Runsl_4989 Runella slithyformis DSM 19594 peptidase C1A papain YP_004658430.1 5788118 R 761193 CDS YP_004658431.1 338214370 10873541 complement(5789473..5790258) 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sli:Slin_3986 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; 3-oxoacyl-ACP reductase 5790258 10873541 Runsl_4990 Runella slithyformis DSM 19594 3-oxoacyl-ACP reductase YP_004658431.1 5789473 R 761193 CDS YP_004658432.1 338214371 10873542 complement(5790289..5791347) 1 NC_015703.1 PFAM: Xylose isomerase-like TIM barrel; InterPro IPR013428; KEGG: sli:Slin_3985 dehydrogenase; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: membrane-bound dehydrogenase; xylose isomerase domain-containing protein 5791347 10873542 Runsl_4991 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004658432.1 5790289 R 761193 CDS YP_004658433.1 338214372 10873543 complement(5791484..5794051) 1 NC_015703.1 TIGRFAM: membrane-bound dehydrogenase domain; COGs: COG0724 RNA-binding protein (RRM domain); InterPro IPR000504; KEGG: rba:RB10458 RNA-binding protein; PFAM: RNA recognition motif, RNP-1; SMART: RNA recognition motif, RNP-1; SPTR: RNA-binding protein; membrane-bound dehydrogenase domain-containing protein 5794051 10873543 Runsl_4992 Runella slithyformis DSM 19594 membrane-bound dehydrogenase domain-containing protein YP_004658433.1 5791484 R 761193 CDS YP_004658434.1 338214373 10873544 complement(5794366..5794749) 1 NC_015703.1 PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: cpi:Cpin_0913 peptidase M16 domain protein; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: Peptidase M16 domain protein; RNP-1 like RNA-binding protein 5794749 10873544 Runsl_4993 Runella slithyformis DSM 19594 RNP-1 like RNA-binding protein YP_004658434.1 5794366 R 761193 CDS YP_004658435.1 338214374 10873545 5795152..5798091 1 NC_015703.1 PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16); COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR014036; KEGG: sli:Slin_0739 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal; SPTR: Transcriptional regulator, DeoR family; peptidase M16 domain-containing protein 5798091 10873545 Runsl_4994 Runella slithyformis DSM 19594 peptidase M16 domain-containing protein YP_004658435.1 5795152 D 761193 CDS YP_004658436.1 338214375 10873546 complement(5798141..5798896) 1 NC_015703.1 PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain; InterPro IPR004385:IPR000086; KEGG: dfe:Dfer_3936 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; TIGRFAM: Nucleoside diphosphate pyrophosphatase; DeoR family transcriptional regulator 5798896 10873546 Runsl_4995 Runella slithyformis DSM 19594 DeoR family transcriptional regulator YP_004658436.1 5798141 R 761193 CDS YP_004658437.1 338214376 10873547 5798959..5799540 1 NC_015703.1 PFAM: NUDIX domain; TIGRFAM: nudix-type nucleoside diphosphatase, YffH/AdpP family; COGs: COG2971 N-acetylglucosamine kinase; KEGG: dfe:Dfer_3564 hypothetical protein; SPTR: uncharacterized protein; nucleoside diphosphate pyrophosphatase 5799540 10873547 Runsl_4996 Runella slithyformis DSM 19594 nucleoside diphosphate pyrophosphatase YP_004658437.1 5798959 D 761193 CDS YP_004658438.1 338214377 10873548 complement(5799547..5800386) 1 NC_015703.1 PFAM: BadF/BadG/BcrA/BcrD ATPase; KEGG: psn:Pedsa_0334 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5800386 10873548 Runsl_4997 Runella slithyformis DSM 19594 hypothetical protein YP_004658438.1 5799547 R 761193 CDS YP_004658439.1 338214378 10873549 complement(5800386..5800718) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1044); hypothetical protein 5800718 10873549 Runsl_4998 Runella slithyformis DSM 19594 hypothetical protein YP_004658439.1 5800386 R 761193 CDS YP_004658440.1 338214379 10873550 complement(5800708..5800938) 1 NC_015703.1 COGs: COG0321 Lipoate-protein ligase B; HAMAP: Octanoyltransferase; InterPro IPR000544:IPR004143; KEGG: dfe:Dfer_3712 lipoate-protein ligase B; PFAM: Biotin/lipoate A/B protein ligase; PRIAM: Lipoyl(octanoyl) transferase; SPTR: Octanoyltransferase; TIGRFAM: Octanoyltransferase; hypothetical protein 5800938 10873550 Runsl_4999 Runella slithyformis DSM 19594 hypothetical protein YP_004658440.1 5800708 R 761193 CDS YP_004658441.1 338214380 10873551 5800992..5801708 1 NC_015703.1 PFAM: Biotin/lipoate A/B protein ligase; TIGRFAM: lipoate-protein ligase B; COGs: COG0514 Superfamily II DNA helicase; InterPro IPR014001:IPR001650:IPR018329:IPR011545; KEGG: dfe:Dfer_3780 ATP-dependent DNA helicase, RecQ family; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent DNA helicase, RecQ family; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, N-terminal; Octanoyltransferase 5801708 10873551 Runsl_5000 Runella slithyformis DSM 19594 Octanoyltransferase YP_004658441.1 5800992 D 761193 CDS YP_004658442.1 338214381 10873552 5801838..5803739 1 NC_015703.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; InterPro IPR002625; KEGG: dfe:Dfer_2585 Smr protein/MutS2; PFAM: Smr protein/MutS2 C-terminal; SPTR: Smr domain protein; ATP-dependent DNA helicase RecQ 5803739 10873552 Runsl_5001 Runella slithyformis DSM 19594 ATP-dependent DNA helicase RecQ YP_004658442.1 5801838 D 761193 CDS YP_004658443.1 338214382 10873553 5803834..5804811 1 NC_015703.1 PFAM: Smr domain; COGs: COG0443 Molecular chaperone; HAMAP: Chaperone DnaK; InterPro IPR012725:IPR013126; KEGG: dfe:Dfer_1226 molecular chaperone DnaK; PFAM: Heat shock protein 70; SPTR: Chaperone protein DnaK; TIGRFAM: Chaperone DnaK; Smr protein/MutS2 5804811 10873553 Runsl_5002 Runella slithyformis DSM 19594 Smr protein/MutS2 YP_004658443.1 5803834 D 761193 CDS YP_004658444.1 338214383 10873554 5805046..5806959 1 NC_015703.1 PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK; InterPro IPR019226; PFAM: Protein of unknown function DUF2158; molecular chaperone DnaK 5806959 10873554 Runsl_5003 Runella slithyformis DSM 19594 molecular chaperone DnaK YP_004658444.1 5805046 D 761193 CDS YP_004658445.1 338214384 10873555 5807472..5807678 1 NC_015703.1 PFAM: Uncharacterized small protein (DUF2158); hypothetical protein 5807678 10873555 Runsl_5004 Runella slithyformis DSM 19594 hypothetical protein YP_004658445.1 5807472 D 761193 CDS YP_004658446.1 338214385 10873556 complement(5807575..5807886) 1 NC_015703.1 hypothetical protein 5807886 10873556 Runsl_5005 Runella slithyformis DSM 19594 hypothetical protein YP_004658446.1 5807575 R 761193 CDS YP_004658447.1 338214386 10873557 5807916..5808170 1 NC_015703.1 COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR002818; KEGG: clj:CLJU_c17590 intracellular protease/amidase related enzyme,ThiJ family; PFAM: ThiJ/PfpI; SPTR: DJ-1/PfpI family protein; hypothetical protein 5808170 10873557 Runsl_5006 Runella slithyformis DSM 19594 hypothetical protein YP_004658447.1 5807916 D 761193 CDS YP_004658448.1 338214387 10873558 5808529..5809245 1 NC_015703.1 PFAM: DJ-1/PfpI family; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: dfe:Dfer_1022 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; ThiJ/PfpI domain-containing protein 5809245 10873558 Runsl_5007 Runella slithyformis DSM 19594 ThiJ/PfpI domain-containing protein YP_004658448.1 5808529 D 761193 CDS YP_004658449.1 338214388 10873559 5809310..5809897 1 NC_015703.1 PFAM: Cyclic nucleotide-binding domain; KEGG: dfe:Dfer_1023 hypothetical protein; SPTR: uncharacterized protein; Crp/Fnr family transcriptional regulator 5809897 10873559 Runsl_5008 Runella slithyformis DSM 19594 Crp/Fnr family transcriptional regulator YP_004658449.1 5809310 D 761193 CDS YP_004658450.1 338214389 10873560 5809965..5810540 1 NC_015703.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: sli:Slin_4170 peptidase M16 domain protein; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: Peptidase M16 domain protein; hypothetical protein 5810540 10873560 Runsl_5009 Runella slithyformis DSM 19594 hypothetical protein YP_004658450.1 5809965 D 761193 CDS YP_004658451.1 338214390 10873561 5810620..5813523 1 NC_015703.1 PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16); COGs: COG2183 Transcriptional accessory protein; InterPro IPR006641:IPR018974:IPR003029; KEGG: dfe:Dfer_1085 RNA binding S1 domain protein; PFAM: Tex-like protein, N-terminal; Ribosomal protein S1, RNA binding domain; SPTR: RNA binding S1 domain protein; peptidase M16 domain-containing protein 5813523 10873561 Runsl_5010 Runella slithyformis DSM 19594 peptidase M16 domain-containing protein YP_004658451.1 5810620 D 761193 CDS YP_004658452.1 338214391 10873562 complement(5813597..5815717) 1 NC_015703.1 PFAM: Tex-like protein N-terminal domain; S1 RNA binding domain; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region; COGs: COG4857 kinase; InterPro IPR002575; KEGG: cao:Celal_1559 aminoglycoside phosphotransferase; PFAM: Aminoglycoside phosphotransferase; SPTR: Aminoglycoside phosphotransferase; Tex-like protein 5815717 10873562 Runsl_5011 Runella slithyformis DSM 19594 Tex-like protein YP_004658452.1 5813597 R 761193 CDS YP_004658453.1 338214392 10873563 5816003..5816986 1 NC_015703.1 PFAM: Phosphotransferase enzyme family; COGs: COG0358 DNA primase; InterProIPR002694:IPR006154:IPR006295:IPR013264:IPR 006171; KEGG: dfe:Dfer_3370 DNA primase; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain; SPTR: DNA primase; TIGRFAM: DNA primase, DnaG; aminoglycoside phosphotransferase 5816986 10873563 Runsl_5012 Runella slithyformis DSM 19594 aminoglycoside phosphotransferase YP_004658453.1 5816003 D 761193 CDS YP_004658454.1 338214393 10873564 complement(5816992..5819067) 1 NC_015703.1 PFAM: Toprim domain; CHC2 zinc finger; DNA primase catalytic core, N-terminal domain; TIGRFAM: DNA primase, catalytic core; COGs: COG2355 Zn-dependent dipeptidase microsomal dipeptidase homolog; InterPro IPR008257; KEGG: lby:Lbys_2765 membrane dipeptidase; PFAM: Peptidase M19, renal dipeptidase; PRIAM: Membrane dipeptidase; SPTR: Membrane dipeptidase; DNA primase 5819067 10873564 Runsl_5013 Runella slithyformis DSM 19594 DNA primase YP_004658454.1 5816992 R 761193 CDS YP_004658455.1 338214394 10873565 complement(5819593..5820816) 1 NC_015703.1 PFAM: Membrane dipeptidase (Peptidase M19); InterPro IPR009739; KEGG: vpa:VP1847 hypothetical protein; PFAM: Protein of unknown function DUF1311; SPTR: uncharacterized protein; membrane dipeptidase 5820816 10873565 Runsl_5014 Runella slithyformis DSM 19594 membrane dipeptidase YP_004658455.1 5819593 R 761193 CDS YP_004658456.1 338214395 10873566 complement(5820850..5821269) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1311); COGs: COG1600 Uncharacterized Fe-S protein; InterPro IPR004453:IPR013542:IPR001450; KEGG: sli:Slin_1519 iron-sulfur cluster binding protein; PFAM: Domain of unknown function DUF1730; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: Iron-sulfur cluster binding protein; TIGRFAM: 4Fe-4S cluster binding; hypothetical protein 5821269 10873566 Runsl_5015 Runella slithyformis DSM 19594 hypothetical protein YP_004658456.1 5820850 R 761193 CDS YP_004658457.1 338214396 10873567 5821426..5822370 1 NC_015703.1 PFAM: Domain of unknown function (DUF1730); TIGRFAM: iron-sulfur cluster binding protein, COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: bth:BT_2763 transposase; PFAM: Transposase, mutator type; SPTR: Transposase; iron-sulfur cluster binding protein 5822370 10873567 Runsl_5016 Runella slithyformis DSM 19594 iron-sulfur cluster binding protein YP_004658457.1 5821426 D 761193 CDS YP_004658458.1 338214397 10873568 5822463..5823674 1 NC_015703.1 PFAM: Transposase, Mutator family; KEGG: tca:659090 kinesin 7; SPTR: Surface protein; transposase mutator type 5823674 10873568 Runsl_5017 Runella slithyformis DSM 19594 transposase mutator type YP_004658458.1 5822463 D 761193 CDS YP_004658459.1 338214398 10873569 complement(5823936..5824583) 1 NC_015703.1 COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated; hypothetical protein 5824583 10873569 Runsl_5018 Runella slithyformis DSM 19594 hypothetical protein YP_004658459.1 5823936 R 761193 CDS YP_004658460.1 338214399 10873570 complement(join(5824683..5825228,5825228..5825692)) 1 NC_015703.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; COGs: COG2223 Nitrate/nitrite transporter; InterPro IPR011701; KEGG: dfe:Dfer_1017 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; transposase 5825692 10873570 Runsl_5019 Runella slithyformis DSM 19594 transposase YP_004658460.1 5824683 R 761193 CDS YP_004658461.1 338214400 10873571 complement(5825975..5827279) 1 NC_015703.1 PFAM: Major Facilitator Superfamily; COGs: COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; InterPro IPR000887; KEGG: dfe:Dfer_1016 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG/KHG aldolase; SPTR: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: KDPG/KHG aldolase; major facilitator superfamily protein 5827279 10873571 Runsl_5020 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004658461.1 5825975 R 761193 CDS YP_004658462.1 338214401 10873572 complement(5827279..5827917) 1 NC_015703.1 PFAM: KDPG and KHG aldolase; TIGRFAM: Entner-Doudoroff aldolase; COGs: COG4993 Glucose dehydrogenase; InterProIPR018391:IPR019551:IPR002372:IPR019556:IPR 003088; KEGG: dfe:Dfer_1014 quinoprotein glucose dehydrogenase; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal; Cytochrome c, class I; PRIAM: Quinoprotein glucose dehydrogenase; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Quinoprotein glucose dehydrogenase; 2-dehydro-3-deoxyphosphogluconate aldolase 5827917 10873572 Runsl_5021 Runella slithyformis DSM 19594 2-dehydro-3-deoxyphosphogluconate aldolase YP_004658462.1 5827279 R 761193 CDS YP_004658463.1 338214402 10873573 complement(5828105..5830306) 1 NC_015703.1 PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus; Cytochrome c; Pyrrolo-quinoline quinone coenzyme C-terminus; PQQ enzyme repeat; KEGG: dfe:Dfer_3444 hypothetical protein; SPTR: uncharacterized protein; quinoprotein glucose dehydrogenase 5830306 10873573 Runsl_5022 Runella slithyformis DSM 19594 quinoprotein glucose dehydrogenase YP_004658463.1 5828105 R 761193 CDS YP_004658464.1 338214403 10873574 complement(5830432..5831403) 1 NC_015703.1 COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341; KEGG: dfe:Dfer_1010 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; PRIAM: Galactonate dehydratase; SPTR: Mandelate racemase/muconate lactonizing protein; hypothetical protein 5831403 10873574 Runsl_5023 Runella slithyformis DSM 19594 hypothetical protein YP_004658464.1 5830432 R 761193 CDS YP_004658465.1 338214404 10873575 complement(5831409..5832650) 1 NC_015703.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR006311:IPR013341:IPR013342; KEGG: dfe:Dfer_1008 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal; PRIAM: Galactonate dehydratase; SPTR: Mandelate racemase/muconate lactonizing protein; galactonate dehydratase 5832650 10873575 Runsl_5024 Runella slithyformis DSM 19594 galactonate dehydratase YP_004658465.1 5831409 R 761193 CDS YP_004658466.1 338214405 10873576 complement(5832980..5834335) 1 NC_015703.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; galactonate dehydratase 5834335 10873576 Runsl_5025 Runella slithyformis DSM 19594 galactonate dehydratase YP_004658466.1 5832980 R 761193 CDS YP_004658467.1 338214406 10873577 complement(5834564..5834890) 1 NC_015703.1 COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: fjo:Fjoh_4487 nitroreductase; PFAM: Nitroreductase-like; SPTR: Nitroreductase; hypothetical protein 5834890 10873577 Runsl_5026 Runella slithyformis DSM 19594 hypothetical protein YP_004658467.1 5834564 R 761193 CDS YP_004658468.1 338214407 10873578 5834985..5835617 1 NC_015703.1 PFAM: Nitroreductase; COGs: COG0135 Phosphoribosylanthranilate isomerase; KEGG: sli:Slin_0951 N-(5'phosphoribosyl)anthranilate isomerase (PRAI); SPTR: N-(5'-phosphoribosyl)anthranilate isomerase; nitroreductase 5835617 10873578 Runsl_5027 Runella slithyformis DSM 19594 nitroreductase YP_004658468.1 5834985 D 761193 CDS YP_004658469.1 338214408 10873579 complement(5835760..5836377) 1 NC_015703.1 InterPro IPR001434:IPR008454; KEGG: cag:Cagg_3132 hypothetical protein; PFAM: Protein of unknown function DUF11; Collagen-binding surface protein Cna-like, B region; SPTR: Conserved repeat domain protein; TIGRFAM: Protein of unknown function DUF11; N-(5'-phosphoribosyl)anthranilate isomerase 5836377 10873579 Runsl_5028 Runella slithyformis DSM 19594 N-(5'-phosphoribosyl)anthranilate isomerase YP_004658469.1 5835760 R 761193 CDS YP_004658470.1 338214409 10873580 complement(5836477..5843790) 1 NC_015703.1 PFAM: Cna protein B-type domain; Domain of unknown function DUF11; TIGRFAM: conserved repeat domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: zpr:ZPR_0114 HTH domain-containing protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Coproporphyrinogen III oxidase; hypothetical protein 5843790 10873580 Runsl_5029 Runella slithyformis DSM 19594 hypothetical protein YP_004658470.1 5836477 R 761193 CDS YP_004658471.1 338214410 10873581 5844453..5845391 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931:IPR013589; KEGG: sli:Slin_2855 transglutaminase; PFAM: Transglutaminase-like; Bacterial transglutaminase-like, N-terminal; SMART: Transglutaminase-like; SPTR: Transglutaminase domain protein; AraC family transcriptional regulator 5845391 10873581 Runsl_5030 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004658471.1 5844453 D 761193 CDS YP_004658472.1 338214411 10873582 complement(5845420..5846262) 1 NC_015703.1 PFAM: Transglutaminase-like superfamily; Bacterial transglutaminase-like N-terminal region; COGs: COG3484 proteasome-type protease; InterPro IPR001353; KEGG: sli:Slin_2854 proteasome-type protease; PFAM: Proteasome, subunit alpha/beta; SPTR: proteasome-type protease; transglutaminase domain-containing protein 5846262 10873582 Runsl_5031 Runella slithyformis DSM 19594 transglutaminase domain-containing protein YP_004658472.1 5845420 R 761193 CDS YP_004658473.1 338214412 10873583 complement(5846322..5847056) 1 NC_015703.1 PFAM: Proteasome subunit; COGs: COG2307 conserved hypothetical protein; InterPro IPR007296; KEGG: sli:Slin_0396 hypothetical protein; PFAM: Protein of unknown function DUF403, bacteria; SPTR: uncharacterized protein; 20S proteasome subunits A/B 5847056 10873583 Runsl_5032 Runella slithyformis DSM 19594 20S proteasome subunits A/B YP_004658473.1 5846322 R 761193 CDS YP_004658474.1 338214413 10873584 complement(5847128..5848093) 1 NC_015703.1 PFAM: Bacterial domain of unknown function (DUF403); COGs: COG2017 Galactose mutarotase; InterPro IPR008183; KEGG: sli:Slin_1235 aldose 1-epimerase; PFAM: Aldose 1-epimerase; PRIAM: Aldose 1-epimerase; SPTR: Aldose 1-epimerase; hypothetical protein 5848093 10873584 Runsl_5033 Runella slithyformis DSM 19594 hypothetical protein YP_004658474.1 5847128 R 761193 CDS YP_004658475.1 338214414 10873585 complement(5848306..5849466) 1 NC_015703.1 PFAM: Aldose 1-epimerase; COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001:IPR001650:IPR011545; KEGG: chu:CHU_1658 DEAD box-related helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD box-related helicase (ATP-dependent RNA helicase); aldose 1-epimerase 5849466 10873585 Runsl_5034 Runella slithyformis DSM 19594 aldose 1-epimerase YP_004658475.1 5848306 R 761193 CDS YP_004658476.1 338214415 10873586 complement(5849585..5850844) 1 NC_015703.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: fjo:Fjoh_3739 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: transcriptional regulator; DEAD/DEAH box helicase 5850844 10873586 Runsl_5035 Runella slithyformis DSM 19594 DEAD/DEAH box helicase YP_004658476.1 5849585 R 761193 CDS YP_004658477.1 338214416 10873587 5851266..5852300 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469:IPR001375; KEGG: shg:Sph21_1018 peptidase s9b dipeptidylpeptidase IV domain protein; SPTR: Peptidase S9B dipeptidylpeptidase IV domain protein; AraC family transcriptional regulator 5852300 10873587 Runsl_5036 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004658477.1 5851266 D 761193 CDS YP_004658478.1 338214417 10873588 5852420..5854711 1 NC_015703.1 PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region; COGs: COG3533 conserved hypothetical protein; InterPro IPR012878:IPR000421; KEGG: cpi:Cpin_4996 hypothetical protein; PFAM: Protein of unknown function DUF1680; Coagulation factor 5/8 type, C-terminal; SPTR: uncharacterized protein; peptidase s9b dipeptidylpeptidase IV domain-containing protein 5854711 10873588 Runsl_5037 Runella slithyformis DSM 19594 peptidase s9b dipeptidylpeptidase IV domain-containing protein YP_004658478.1 5852420 D 761193 CDS YP_004658479.1 338214418 10873589 5854790..5857201 1 NC_015703.1 PFAM: F5/8 type C domain; glycosyl hydrolase of unknown function (DUF1680); KEGG: sli:Slin_0237 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5857201 10873589 Runsl_5038 Runella slithyformis DSM 19594 hypothetical protein YP_004658479.1 5854790 D 761193 CDS YP_004658480.1 338214419 10873590 5857264..5859285 1 NC_015703.1 InterPro IPR005184; KEGG: lby:Lbys_3081 hypothetical protein; PFAM: Domain of unknown function DUF306, Meta/HslJ; SPTR: uncharacterized protein; hypothetical protein 5859285 10873590 Runsl_5039 Runella slithyformis DSM 19594 hypothetical protein YP_004658480.1 5857264 D 761193 CDS YP_004658481.1 338214420 10873591 5859375..5859854 1 NC_015703.1 PFAM: META domain; KEGG: nmu:Nmul_A0278 glycosyl transferase; SPTR: uncharacterized protein; hypothetical protein 5859854 10873591 Runsl_5040 Runella slithyformis DSM 19594 hypothetical protein YP_004658481.1 5859375 D 761193 CDS YP_004658482.1 338214421 10873592 complement(5859912..5861240) 1 NC_015703.1 KEGG: psn:Pedsa_3200 FkbM family methyltransferase; SPTR: Pcmt-protein-L-isoaspartate(D-aspartate) o-methyltransferase; hypothetical protein 5861240 10873592 Runsl_5041 Runella slithyformis DSM 19594 hypothetical protein YP_004658482.1 5859912 R 761193 CDS YP_004658483.1 338214422 10873593 complement(5861252..5861896) 1 NC_015703.1 InterPro IPR002797; KEGG: dfe:Dfer_4792 hypothetical protein; PFAM: Polysaccharide biosynthesis protein; SPTR: uncharacterized protein; FkbM family methyltransferase 5861896 10873593 Runsl_5042 Runella slithyformis DSM 19594 FkbM family methyltransferase YP_004658483.1 5861252 R 761193 CDS YP_004658484.1 338214423 10873594 complement(5861930..5863426) 1 NC_015703.1 PFAM: Polysaccharide biosynthesis protein; COGs: COG0381 UDP-N-acetylglucosamine 2-epimerase; InterPro IPR003331; KEGG: sli:Slin_4071 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; PRIAM: UDP-N-acetylglucosamine 2-epimerase; SPTR: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; polysaccharide biosynthesis protein 5863426 10873594 Runsl_5043 Runella slithyformis DSM 19594 polysaccharide biosynthesis protein YP_004658484.1 5861930 R 761193 CDS YP_004658485.1 338214424 10873595 complement(5863456..5864556) 1 NC_015703.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: bfr:BF4507 glycosyltransferase; PFAM: Glycosyl transferase, group 1; SPTR: glycosyltransferase; UDP-N-acetylglucosamine 2-epimerase 5864556 10873595 Runsl_5044 Runella slithyformis DSM 19594 UDP-N-acetylglucosamine 2-epimerase YP_004658485.1 5863456 R 761193 CDS YP_004658486.1 338214425 10873596 complement(5864553..5865764) 1 NC_015703.1 PFAM: Glycosyl transferases group 1; COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692; KEGG: sli:Slin_0038 peptidase S45 penicillin amidase; PFAM: Peptidase S45, penicillin amidase; PRIAM: Acyl-homoserine-lactone acylase; SPTR: Peptidase S45 penicillin amidase; group 1 glycosyl transferase 5865764 10873596 Runsl_5045 Runella slithyformis DSM 19594 group 1 glycosyl transferase YP_004658486.1 5864553 R 761193 CDS YP_004658487.1 338214426 10873597 complement(5865921..5868314) 1 NC_015703.1 PFAM: Penicillin amidase; COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR011344:IPR000424; KEGG: cpi:Cpin_0936 single-strand binding protein; PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; acyl-homoserine-lactone acylase 5868314 10873597 Runsl_5046 Runella slithyformis DSM 19594 acyl-homoserine-lactone acylase YP_004658487.1 5865921 R 761193 CDS YP_004658488.1 338214427 10873598 5868457..5868804 1 NC_015703.1 PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb); COGs: COG4974 Site-specific recombinase XerD; InterPro IPR011946:IPR002104; KEGG: fbc:FB2170_10354 tyrosine type site-specific recombinase; PFAM: Integrase, catalytic core, phage; SPTR: TnpF; TIGRFAM: Integrase, integron-type; single-strand binding protein 5868804 10873598 Runsl_5047 Runella slithyformis DSM 19594 single-strand binding protein YP_004658488.1 5868457 D 761193 CDS YP_004658489.1 338214428 10873599 5868888..5870504 1 NC_015703.1 PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase; TIGRFAM: integron integrase; KEGG: ank:AnaeK_3917 hypothetical protein; SPTR: uncharacterized protein; integron integrase 5870504 10873599 Runsl_5048 Runella slithyformis DSM 19594 integron integrase YP_004658489.1 5868888 D 761193 CDS YP_004658490.1 338214429 10873600 5870838..5871323 1 NC_015703.1 PFAM: Protein of unknown function (DUF2679); SPTR: uncharacterized protein; hypothetical protein 5871323 10873600 Runsl_5049 Runella slithyformis DSM 19594 hypothetical protein YP_004658490.1 5870838 D 761193 CDS YP_004658491.1 338214430 10873601 complement(5871541..5871939) 1 NC_015703.1 KEGG: ana:all3044 hypothetical protein; SPTR: All3044 protein; hypothetical protein 5871939 10873601 Runsl_5050 Runella slithyformis DSM 19594 hypothetical protein YP_004658491.1 5871541 R 761193 CDS YP_004658492.1 338214431 10873602 5872188..5872688 1 NC_015703.1 KEGG: hba:Hbal_0425 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5872688 10873602 Runsl_5051 Runella slithyformis DSM 19594 hypothetical protein YP_004658492.1 5872188 D 761193 CDS YP_004658493.1 338214432 10873603 5872693..5873235 1 NC_015703.1 COGs: COG3832 conserved hypothetical protein; InterPro IPR013538; KEGG: psn:Pedsa_0910 activator of HSP90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase homologue 1-like; SPTR: Activator of Hsp90 ATPase 1 family protein; hypothetical protein 5873235 10873603 Runsl_5052 Runella slithyformis DSM 19594 hypothetical protein YP_004658493.1 5872693 D 761193 CDS YP_004658494.1 338214433 10873604 5873235..5873651 1 NC_015703.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein; InterPro IPR001845; KEGG: shg:Sph21_2794 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family; Activator of Hsp90 ATPase 1 family protein 5873651 10873604 Runsl_5053 Runella slithyformis DSM 19594 Activator of Hsp90 ATPase 1 family protein YP_004658494.1 5873235 D 761193 CDS YP_004658495.1 338214434 10873605 5873648..5873965 1 NC_015703.1 PFAM: Bacterial regulatory protein, arsR family; manually curated; regulatory protein ArsR 5873965 10873605 Runsl_5054 Runella slithyformis DSM 19594 regulatory protein ArsR YP_004658495.1 5873648 D 761193 CDS YP_004658496.1 338214435 10873607 5874143..5874949 1 NC_015703.1 PFAM: PKD domain; KEGG: drt:Dret_2521 hypothetical protein; SPTR: uncharacterized protein; PKD domain-containing protein 5874949 10873607 Runsl_5056 Runella slithyformis DSM 19594 PKD domain-containing protein YP_004658496.1 5874143 D 761193 CDS YP_004658497.1 338214436 10873608 complement(5874881..5875741) 1 NC_015703.1 PFAM: Uncharacterised protein family (UPF0236); hypothetical protein 5875741 10873608 Runsl_5057 Runella slithyformis DSM 19594 hypothetical protein YP_004658497.1 5874881 R 761193 CDS YP_004658498.1 338214437 10873609 complement(5875843..5876049) 1 NC_015703.1 KEGG: phe:Phep_1744 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5876049 10873609 Runsl_5058 Runella slithyformis DSM 19594 hypothetical protein YP_004658498.1 5875843 R 761193 CDS YP_004658499.1 338214438 10873610 5876367..5877182 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 5877182 10873610 Runsl_5059 Runella slithyformis DSM 19594 hypothetical protein YP_004658499.1 5876367 D 761193 CDS YP_004658500.1 338214439 10873612 5878685..5879845 1 NC_015703.1 PFAM: Acyltransferase; KEGG: nhl:Nhal_2068 hypothetical protein; SPTR: uncharacterized protein; acyltransferase 5879845 10873612 Runsl_5061 Runella slithyformis DSM 19594 acyltransferase YP_004658500.1 5878685 D 761193 CDS YP_004658501.1 338214440 10873613 5880329..5880907 1 NC_015703.1 PFAM: Protoglobin; hypothetical protein 5880907 10873613 Runsl_5062 Runella slithyformis DSM 19594 hypothetical protein YP_004658501.1 5880329 D 761193 CDS YP_004658502.1 338214441 10873614 5880932..5881192 1 NC_015703.1 InterPro IPR018592; KEGG: fbc:FB2170_11031 hypothetical protein; PFAM: Domain of unknown function DUF2024; SPTR: uncharacterized protein; hypothetical protein 5881192 10873614 Runsl_5063 Runella slithyformis DSM 19594 hypothetical protein YP_004658502.1 5880932 D 761193 CDS YP_004658503.1 338214442 10873615 5881454..5881717 1 NC_015703.1 PFAM: Domain of unknown function (DUF2024); InterPro IPR000835; KEGG: fjo:Fjoh_4139 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; hypothetical protein 5881717 10873615 Runsl_5064 Runella slithyformis DSM 19594 hypothetical protein YP_004658503.1 5881454 D 761193 CDS YP_004658504.1 338214443 10873616 5881719..5882315 1 NC_015703.1 PFAM: MarR family; Prodigal; This gene is disrupted by insertion of repetitive element; manually curated; regulatory protein MarR 5882315 10873616 Runsl_5065 Runella slithyformis DSM 19594 regulatory protein MarR YP_004658504.1 5881719 D 761193 CDS YP_004658505.1 338214444 10873618 complement(5883682..5884692) 1 NC_015703.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: fba:FIC_01213 probable integrase; PFAM: Integrase, catalytic core, phage; SPTR: Integrase; transposase IS116/IS110/IS902 family protein 5884692 10873618 Runsl_5067 Runella slithyformis DSM 19594 transposase IS116/IS110/IS902 family protein YP_004658505.1 5883682 R 761193 CDS YP_004658506.1 338214445 10873619 complement(5885185..5885883) 1 NC_015703.1 PFAM: Phage integrase; integrase 5885883 10873619 Runsl_5068 Runella slithyformis DSM 19594 integrase YP_004658506.1 5885185 R 761193 CDS YP_004658507.1 338214446 10873620 5886272..5886724 1 NC_015703.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: sli:Slin_1635 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; hypothetical protein 5886724 10873620 Runsl_5069 Runella slithyformis DSM 19594 hypothetical protein YP_004658507.1 5886272 D 761193 CDS YP_004658508.1 338214447 10873621 5886726..5887313 1 NC_015703.1 PFAM: Cyclic nucleotide-binding domain; KEGG: chu:CHU_2272 hypothetical protein; SPTR: uncharacterized protein; Crp/Fnr family transcriptional regulator 5887313 10873621 Runsl_5070 Runella slithyformis DSM 19594 Crp/Fnr family transcriptional regulator YP_004658508.1 5886726 D 761193 CDS YP_004658509.1 338214448 10873622 5887392..5888084 1 NC_015703.1 COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR008030; KEGG: sli:Slin_1633 NmrA family protein; SPTR: NmrA family protein; hypothetical protein 5888084 10873622 Runsl_5071 Runella slithyformis DSM 19594 hypothetical protein YP_004658509.1 5887392 D 761193 CDS YP_004658510.1 338214449 10873623 5888091..5889083 1 NC_015703.1 PFAM: NmrA-like family; COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated; NmrA family protein 5889083 10873623 Runsl_5072 Runella slithyformis DSM 19594 NmrA family protein YP_004658510.1 5888091 D 761193 CDS YP_004658511.1 338214450 10873624 join(5889459..5889923,5889925..5890470) 1 NC_015703.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; transposase 5890470 10873624 Runsl_5073 Runella slithyformis DSM 19594 transposase YP_004658511.1 5889459 D 761193 CDS YP_004658512.1 338214451 10873625 5890584..5890730 1 NC_015703.1 hypothetical protein 5890730 10873625 Runsl_5074 Runella slithyformis DSM 19594 hypothetical protein YP_004658512.1 5890584 D 761193 CDS YP_004658513.1 338214452 10873626 5890802..5891140 1 NC_015703.1 manually curated; hypothetical protein 5891140 10873626 Runsl_5075 Runella slithyformis DSM 19594 hypothetical protein YP_004658513.1 5890802 D 761193 CDS YP_004658514.1 338214453 10873628 5891981..5892556 1 NC_015703.1 PFAM: Cyclic nucleotide-binding domain; COGs: COG1018 Flavodoxin reductase (ferredoxin-NADPH reductase) family 1; InterPro IPR006694:IPR008333:IPR001433:IPR001041; KEGG: pfl:PFL_3137 phenylacetate-CoA oxygenase, PaaK subunit; PFAM: Fatty acid hydroxylase; Oxidoreductase FAD-binding region; Oxidoreductase FAD/NAD(P)-binding; Ferredoxin; SPTR: Sterol desaturase; Crp/Fnr family transcriptional regulator 5892556 10873628 Runsl_5077 Runella slithyformis DSM 19594 Crp/Fnr family transcriptional regulator YP_004658514.1 5891981 D 761193 CDS YP_004658515.1 338214454 10873629 5892667..5894478 1 NC_015703.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; Fatty acid hydroxylase superfamily; KEGG: cpi:Cpin_2508 hypothetical protein; SPTR: uncharacterized protein; fatty acid hydroxylase 5894478 10873629 Runsl_5078 Runella slithyformis DSM 19594 fatty acid hydroxylase YP_004658515.1 5892667 D 761193 CDS YP_004658516.1 338214455 10873630 5894483..5895154 1 NC_015703.1 COGs: COG3449 DNA gyrase inhibitor; InterPro IPR018060:IPR000005:IPR010499; KEGG: gur:Gura_3503 transcription activator, effector binding; PFAM: Bacterial transcription activator, effector binding; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC-type; hypothetical protein 5895154 10873630 Runsl_5079 Runella slithyformis DSM 19594 hypothetical protein YP_004658516.1 5894483 D 761193 CDS YP_004658517.1 338214456 10873631 5895899..5896768 1 NC_015703.1 PFAM: Bacterial transcription activator, effector binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: cbi:CLJ_0016 hypothetical protein; SPTR: uncharacterized protein; AraC family transcriptional regulator 5896768 10873631 Runsl_5080 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004658517.1 5895899 D 761193 CDS YP_004658518.1 338214457 10873632 5896830..5897324 1 NC_015703.1 PFAM: Polyketide cyclase / dehydrase and lipid transport; manually curated; hypothetical protein 5897324 10873632 Runsl_5081 Runella slithyformis DSM 19594 hypothetical protein YP_004658518.1 5896830 D 761193 CDS YP_004658519.1 338214458 10873634 5897842..5898705 1 NC_015703.1 PFAM: WD40-like Beta Propeller Repeat; manually curated; hypothetical protein 5898705 10873634 Runsl_5083 Runella slithyformis DSM 19594 hypothetical protein YP_004658519.1 5897842 D 761193 CDS YP_004658520.1 338214459 10873636 complement(5900067..5901083) 1 NC_015703.1 PFAM: Transposase DDE domain; transposase IS4 family protein 5901083 10873636 Runsl_5085 Runella slithyformis DSM 19594 transposase IS4 family protein YP_004658520.1 5900067 R 761193 CDS YP_004658521.1 338214460 10873637 complement(5901225..5901347) 1 NC_015703.1 COGs: COG2354 conserved hypothetical protein; InterPro IPR008526; KEGG: shg:Sph21_0217 protein of unknown function DUF808; PFAM: Protein of unknown function DUF808; SPTR: Conserved hypothetical transmembrane protein; hypothetical protein 5901347 10873637 Runsl_5086 Runella slithyformis DSM 19594 hypothetical protein YP_004658521.1 5901225 R 761193 CDS YP_004658522.1 338214461 10873638 5901518..5902384 1 NC_015703.1 PFAM: Protein of unknown function (DUF808); COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR006680; KEGG: fba:FIC_00226 dihydroorotase; PFAM: Amidohydrolase 1; PRIAM: Allantoinase; SPTR: Dihydroorotase; hypothetical protein 5902384 10873638 Runsl_5087 Runella slithyformis DSM 19594 hypothetical protein YP_004658522.1 5901518 D 761193 CDS YP_004658523.1 338214462 10873639 5902633..5903982 1 NC_015703.1 PFAM: Amidohydrolase; TIGRFAM: dihydroorotase, multifunctional complex type; KEGG: cyh:Cyan8802_1036 hypothetical protein; SPTR: uncharacterized protein; allantoinase 5903982 10873639 Runsl_5088 Runella slithyformis DSM 19594 allantoinase YP_004658523.1 5902633 D 761193 CDS YP_004658524.1 338214463 10873640 5903972..5904823 1 NC_015703.1 COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140; KEGG: sli:Slin_0324 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; PRIAM: Phosphoglycerate dehydrogenase; SPTR: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; manually curated; hypothetical protein 5904823 10873640 Runsl_5089 Runella slithyformis DSM 19594 hypothetical protein YP_004658524.1 5903972 D 761193 CDS YP_004658525.1 338214464 10873641 complement(5905143..5906087) 1 NC_015703.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; COGs: COG1995 Pyridoxal phosphate biosynthesis protein; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; InterPro IPR005255; KEGG: dfe:Dfer_0418 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; PRIAM: 4-hydroxythreonine-4-phosphate dehydrogenase; SPTR: 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; phosphoglycerate dehydrogenase 5906087 10873641 Runsl_5090 Runella slithyformis DSM 19594 phosphoglycerate dehydrogenase YP_004658525.1 5905143 R 761193 CDS YP_004658526.1 338214465 10873642 5906257..5907342 1 NC_015703.1 PFAM: Pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; Prodigal; manually curated; 4-hydroxythreonine-4-phosphate dehydrogenase 5907342 10873642 Runsl_5091 Runella slithyformis DSM 19594 4-hydroxythreonine-4-phosphate dehydrogenase YP_004658526.1 5906257 D 761193 CDS YP_004658527.1 338214466 10873644 5907837..5908724 1 NC_015703.1 PFAM: YicC-like family, N-terminal region; Domain of unknown function (DUF1732); TIGRFAM: TIGR00255 family protein; COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176:IPR006108; KEGG: sli:Slin_3957 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; PRIAM: 3-hydroxyacyl-CoA dehydrogenase; SPTR: 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; hypothetical protein 5908724 10873644 Runsl_5093 Runella slithyformis DSM 19594 hypothetical protein YP_004658527.1 5907837 D 761193 CDS YP_004658528.1 338214467 10873645 complement(5908996..5909970) 1 NC_015703.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR001610:IPR003018:IPR003661:IPR 003594:IPR001789:IPR008207:IPR013767; KEGG: sli:Slin_3312 multi-sensor hybrid histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; PAS fold; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; PAS; PAC motif; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; 3-hydroxyacyl-CoA dehydrogenase 5909970 10873645 Runsl_5094 Runella slithyformis DSM 19594 3-hydroxyacyl-CoA dehydrogenase YP_004658528.1 5908996 R 761193 CDS YP_004658529.1 338214468 10873646 complement(5910305..5913922) 1 NC_015703.1 PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; Hpt domain; TIGRFAM: PAS domain S-box; COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); HAMAP: Ribosomal RNA adenine dimethylase; InterPro IPR020598:IPR011530:IPR001737; KEGG: dfe:Dfer_5760 dimethyladenosine transferase; PFAM: Ribosomal RNA adenine methylase transferase; SMART: Ribosomal RNA adenine methylase transferase, N-terminal; SPTR: Ribosomal RNA small subunit methyltransferase A; TIGRFAM: Ribosomal RNA adenine dimethylase; multi-sensor hybrid histidine kinase 5913922 10873646 Runsl_5095 Runella slithyformis DSM 19594 multi-sensor hybrid histidine kinase YP_004658529.1 5910305 R 761193 CDS YP_004658530.1 338214469 10873647 5914364..5915176 1 NC_015703.1 PFAM: Ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase; COGs: COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); InterPro IPR000644:IPR006669:IPR006668:IPR006667; KEGG: sli:Slin_3299 magnesium transporter; PFAM: MgtE integral membrane region; Cystathionine beta-synthase, core; Magnesium transporter, MgtE intracellular region; SPTR: Magnesium transporter; TIGRFAM: Divalent cation transporter; ribosomal RNA small subunit methyltransferase A 5915176 10873647 Runsl_5096 Runella slithyformis DSM 19594 ribosomal RNA small subunit methyltransferase A YP_004658530.1 5914364 D 761193 CDS YP_004658531.1 338214470 10873648 5915329..5916678 1 NC_015703.1 PFAM: MgtE intracellular N domain; CBS domain; Divalent cation transporter; TIGRFAM: Mg2+ transporter (mgtE); COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: ter:Tery_4525 DNA-cytosine methyltransferase; PFAM: DNA methylase, C-5 cytosine-specific; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA methylase, C-5 cytosine-specific; magnesium transporter 5916678 10873648 Runsl_5097 Runella slithyformis DSM 19594 magnesium transporter YP_004658531.1 5915329 D 761193 CDS YP_004658532.1 338214471 10873649 5916772..5917776 1 NC_015703.1 PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); InterPro IPR009528; KEGG: ter:Tery_4526 type II site-specific deoxyribonuclease; PFAM: Restriction endonuclease, type II, BsuBI/PstI, C-terminal; PRIAM: Type II site-specific deoxyribonuclease; SPTR: Type II site-specific deoxyribonuclease; DNA-cytosine methyltransferase 5917776 10873649 Runsl_5098 Runella slithyformis DSM 19594 DNA-cytosine methyltransferase YP_004658532.1 5916772 D 761193 CDS YP_004658533.1 338214472 10873650 5917778..5918791 1 NC_015703.1 PFAM: BsuBI/PstI restriction endonuclease C-terminus; InterPro IPR008030; KEGG: sli:Slin_5373 NmrA family protein; SPTR: NmrA family protein; type II site-specific deoxyribonuclease 5918791 10873650 Runsl_5099 Runella slithyformis DSM 19594 type II site-specific deoxyribonuclease YP_004658533.1 5917778 D 761193 CDS YP_004658534.1 338214473 10873651 5918795..5919820 1 NC_015703.1 PFAM: NmrA-like family; COGs: COG2819 hydrolase of the alpha/beta superfamily; InterPro IPR000801; KEGG: fjo:Fjoh_2146 esterase; PFAM: esterase; SPTR: uncharacterized protein; NmrA family protein 5919820 10873651 Runsl_5100 Runella slithyformis DSM 19594 NmrA family protein YP_004658534.1 5918795 D 761193 CDS YP_004658535.1 338214474 10873652 5919885..5920733 1 NC_015703.1 PFAM: esterase; esterase 5920733 10873652 Runsl_5101 Runella slithyformis DSM 19594 esterase YP_004658535.1 5919885 D 761193 CDS YP_004658536.1 338214475 10873653 5920833..5920994 1 NC_015703.1 COGs: COG1522 Transcriptional regulators; InterPro IPR019888:IPR019887; KEGG: dfe:Dfer_4405 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type; SPTR: Transcriptional regulator, AsnC family; hypothetical protein 5920994 10873653 Runsl_5102 Runella slithyformis DSM 19594 hypothetical protein YP_004658536.1 5920833 D 761193 CDS YP_004658537.1 338214476 10873654 complement(5921289..5921753) 1 NC_015703.1 PFAM: HTH domain; AsnC family; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_4406 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: L-threonine 3-dehydrogenase; SPTR: NAD-dependent epimerase/dehydratase; AsnC family transcriptional regulator 5921753 10873654 Runsl_5103 Runella slithyformis DSM 19594 AsnC family transcriptional regulator YP_004658537.1 5921289 R 761193 CDS YP_004658538.1 338214477 10873655 5921947..5922900 1 NC_015703.1 PFAM: NAD dependent epimerase/dehydratase; COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR011282:IPR004839; KEGG: dfe:Dfer_4407 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase, class I/II; PRIAM: Glycine C-acetyltransferase; SPTR: 2-amino-3-ketobutyrate coenzyme A ligase; TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; L-threonine 3-dehydrogenase 5922900 10873655 Runsl_5104 Runella slithyformis DSM 19594 L-threonine 3-dehydrogenase YP_004658538.1 5921947 D 761193 CDS YP_004658539.1 338214478 10873656 5922905..5924110 1 NC_015703.1 PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase; 2-amino-3-ketobutyrate coenzyme A ligase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: sli:Slin_6288 sulfatase; PFAM: Sulfatase; PRIAM: Steryl-sulfatase; SPTR: Sulfatase; 2-amino-3-ketobutyrate CoA ligase 5924110 10873656 Runsl_5105 Runella slithyformis DSM 19594 2-amino-3-ketobutyrate CoA ligase YP_004658539.1 5922905 D 761193 CDS YP_004658540.1 338214479 10873657 complement(5924227..5925714) 1 NC_015703.1 PFAM: Sulfatase; COGs: COG1490 D-Tyr-tRNAtyr deacylase; HAMAP: D-tyrosyl-tRNA(Tyr) deacylase; InterPro IPR003732; KEGG: dfe:Dfer_5755 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; SPTR: D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; Steryl-sulfatase 5925714 10873657 Runsl_5106 Runella slithyformis DSM 19594 Steryl-sulfatase YP_004658540.1 5924227 R 761193 CDS YP_004658541.1 338214480 10873658 5925819..5926271 1 NC_015703.1 PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; COGs: COG4464 Capsular polysaccharide biosynthesis protein; KEGG: cpi:Cpin_4733 capsular polysaccharide biosynthesis protein; SPTR: Capsular polysaccharide biosynthesis protein; D-tyrosyl-tRNA(Tyr) deacylase 5926271 10873658 Runsl_5107 Runella slithyformis DSM 19594 D-tyrosyl-tRNA(Tyr) deacylase YP_004658541.1 5925819 D 761193 CDS YP_004658542.1 338214481 10873659 5926375..5927106 1 NC_015703.1 COGs: COG2094 3-methyladenine DNA glycosylase; HAMAP: 3-methyladenine DNA glycosylase; InterPro IPR003180; KEGG: sli:Slin_0319 DNA-3-methyladenine glycosylase; PFAM: Methylpurine-DNA glycosylase (MPG); PRIAM: DNA-3-methyladenine glycosylase II; SPTR: 3-methyladenine DNA glycosylase; TIGRFAM: Methylpurine-DNA glycosylase (MPG); capsular polysaccharide biosynthesis protein 5927106 10873659 Runsl_5108 Runella slithyformis DSM 19594 capsular polysaccharide biosynthesis protein YP_004658542.1 5926375 D 761193 CDS YP_004658543.1 338214482 10873660 complement(5927269..5927874) 1 NC_015703.1 PFAM: Methylpurine-DNA glycosylase (MPG); TIGRFAM: DNA-3-methyladenine glycosylase (3mg); KEGG: sli:Slin_3865 hypothetical protein; SPTR: uncharacterized protein; 3-methyladenine DNA glycosylase 5927874 10873660 Runsl_5109 Runella slithyformis DSM 19594 3-methyladenine DNA glycosylase YP_004658543.1 5927269 R 761193 CDS YP_004658544.1 338214483 10873661 5928025..5930187 1 NC_015703.1 COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001:IPR001650:IPR000330; KEGG: sli:Slin_6180 SNF2-related protein; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: SNF2-related protein; hypothetical protein 5930187 10873661 Runsl_5110 Runella slithyformis DSM 19594 hypothetical protein YP_004658544.1 5928025 D 761193 CDS YP_004658545.1 338214484 10873662 complement(5930212..5933157) 1 NC_015703.1 PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR003313:IPR000005; KEGG: dfe:Dfer_5280 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; AraC protein, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; SNF2-like protein 5933157 10873662 Runsl_5111 Runella slithyformis DSM 19594 SNF2-like protein YP_004658545.1 5930212 R 761193 CDS YP_004658546.1 338214485 10873663 5933479..5934321 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: sli:Slin_4403 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Aspartate transaminase; SPTR: Aminotransferase class I and II; AraC family transcriptional regulator 5934321 10873663 Runsl_5112 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004658546.1 5933479 D 761193 CDS YP_004658547.1 338214486 10873664 complement(5934470..5935687) 1 NC_015703.1 PFAM: Aminotransferase class I and II; COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; InterPro IPR014048; KEGG: cly:Celly_1566 methylated-DNA/protein-cysteinemethyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; SPTR: Methylated-DNA--protein-cysteine S-methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; aspartate transaminase 5935687 10873664 Runsl_5113 Runella slithyformis DSM 19594 aspartate transaminase YP_004658547.1 5934470 R 761193 CDS YP_004658548.1 338214487 10873665 5935705..5936247 1 NC_015703.1 PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase; COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: dfe:Dfer_5434 beta-Ig-H3/fasciclin; PFAM: FAS1 domain; SMART: FAS1 domain; SPTR: Beta-Ig-H3/fasciclin; methylated-DNA--protein-cysteine methyltransferase 5936247 10873665 Runsl_5114 Runella slithyformis DSM 19594 methylated-DNA--protein-cysteine methyltransferase YP_004658548.1 5935705 D 761193 CDS YP_004658549.1 338214488 10873666 complement(5936400..5936948) 1 NC_015703.1 PFAM: Fasciclin domain; KEGG: nve:NEMVE_v1g224714 hypothetical protein; SPTR: Hemopexin repeats containing protein; beta-Ig-H3/fasciclin 5936948 10873666 Runsl_5115 Runella slithyformis DSM 19594 beta-Ig-H3/fasciclin YP_004658549.1 5936400 R 761193 CDS YP_004658550.1 338214489 10873667 complement(5937417..5938331) 1 NC_015703.1 InterPro IPR001434; KEGG: sli:Slin_0177 hypothetical protein; PFAM: Protein of unknown function DUF11; SPTR: Conserved repeat domain protein; TIGRFAM: Protein of unknown function DUF11; hypothetical protein 5938331 10873667 Runsl_5116 Runella slithyformis DSM 19594 hypothetical protein YP_004658550.1 5937417 R 761193 CDS YP_004658551.1 338214490 10873668 complement(5938388..5939635) 1 NC_015703.1 PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain; InterPro IPR003343:IPR010221:IPR003367; KEGG: cpi:Cpin_3623 outer membrane adhesin like protein; SMART: Bacterial Ig-like, group 2; SPTR: Outer membrane adhesin like protein; TIGRFAM: VCBS repeat domain; hypothetical protein 5939635 10873668 Runsl_5117 Runella slithyformis DSM 19594 hypothetical protein YP_004658551.1 5938388 R 761193 CDS YP_004658552.1 338214491 10873669 complement(5939712..5949146) 1 NC_015703.1 InterPro IPR003367; KEGG: dfe:Dfer_0535 hypothetical protein; SPTR: Probable aggregation factor core protein MAFp3, isoform C; outer membrane adhesin-like protein 5949146 10873669 Runsl_5118 Runella slithyformis DSM 19594 outer membrane adhesin-like protein YP_004658552.1 5939712 R 761193 CDS YP_004658553.1 338214492 10873670 complement(5949351..5955887) 1 NC_015703.1 KEGG: dfe:Dfer_2338 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5955887 10873670 Runsl_5119 Runella slithyformis DSM 19594 hypothetical protein YP_004658553.1 5949351 R 761193 CDS YP_004658554.1 338214493 10873671 complement(5956057..5956794) 1 NC_015703.1 PFAM: C1q domain; hypothetical protein 5956794 10873671 Runsl_5120 Runella slithyformis DSM 19594 hypothetical protein YP_004658554.1 5956057 R 761193 CDS YP_004658555.1 338214494 10873672 complement(5956861..5957643) 1 NC_015703.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_6424 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; hypothetical protein 5957643 10873672 Runsl_5121 Runella slithyformis DSM 19594 hypothetical protein YP_004658555.1 5956861 R 761193 CDS YP_004658556.1 338214495 10873673 5958318..5959130 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: fjo:Fjoh_1442 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: Integral membrane sensor signal transduction histidine kinase; LytTR family two component transcriptional regulator 5959130 10873673 Runsl_5122 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004658556.1 5958318 D 761193 CDS YP_004658557.1 338214496 10873674 5959178..5961106 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: fjo:Fjoh_1442 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: Integral membrane sensor signal transduction histidine kinase; histidine kinase 5961106 10873674 Runsl_5123 Runella slithyformis DSM 19594 histidine kinase YP_004658557.1 5959178 D 761193 CDS YP_004658558.1 338214497 10873675 5961164..5963143 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; histidine kinase 5963143 10873675 Runsl_5124 Runella slithyformis DSM 19594 histidine kinase YP_004658558.1 5961164 D 761193 CDS YP_004658559.1 338214498 10873678 complement(5963516..5964244) 1 NC_015703.1 PFAM: Biopterin-dependent aromatic amino acid hydroxylase; TIGRFAM: phenylalanine-4-hydroxylase, monomeric form; COGs: COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins; InterPro IPR005956:IPR004360; KEGG: sli:Slin_6320 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; PRIAM: 4-hydroxyphenylpyruvate dioxygenase; SPTR: 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; phenylalanine 4-monooxygenase 5964244 10873678 Runsl_5125 Runella slithyformis DSM 19594 phenylalanine 4-monooxygenase YP_004658559.1 5963516 R 761193 CDS YP_004658560.1 338214499 10873679 complement(5964335..5965468) 1 NC_015703.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR005914:IPR000873; KEGG: sli:Slin_4421 acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Acetoacetate--CoA ligase; SPTR: Acetoacetyl-CoA synthase; TIGRFAM: Acetoacetyl-CoA synthase; 4-hydroxyphenylpyruvate dioxygenase 5965468 10873679 Runsl_5126 Runella slithyformis DSM 19594 4-hydroxyphenylpyruvate dioxygenase YP_004658560.1 5964335 R 761193 CDS YP_004658563.1 338214500 10873682 5969655..5970848 1 NC_015703.1 PFAM: Glycosyl transferases group 1; KEGG: lby:Lbys_2798 hypothetical protein; SPTR: uncharacterized protein; group 1 glycosyl transferase 5970848 10873682 Runsl_5129 Runella slithyformis DSM 19594 group 1 glycosyl transferase YP_004658563.1 5969655 D 761193 CDS YP_004658564.1 338214501 10873683 complement(5970893..5972266) 1 NC_015703.1 COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_4648 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; hypothetical protein 5972266 10873683 Runsl_5130 Runella slithyformis DSM 19594 hypothetical protein YP_004658564.1 5970893 R 761193 CDS YP_004658565.1 338214502 10873684 complement(5972301..5974574) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TonB-dependent receptor 5974574 10873684 Runsl_5131 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004658565.1 5972301 R 761193 CDS YP_004658566.1 338214503 10873685 complement(5974779..5974928) 1 NC_015703.1 InterPro IPR002516; KEGG: mpl:Mpal_2194 glycosyl transferase 11; PFAM: Glycosyl transferase, family 11; SPTR: Glycosyl transferase 11; hypothetical protein 5974928 10873685 Runsl_5132 Runella slithyformis DSM 19594 hypothetical protein YP_004658566.1 5974779 R 761193 CDS YP_004658567.1 338214504 10873686 5975103..5975966 1 NC_015703.1 PFAM: Glycosyl transferase 11; InterPro IPR003088; KEGG: pfo:Pfl01_1738 cytochrome c, class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c, class I; glycosyl transferase family protein 5975966 10873686 Runsl_5133 Runella slithyformis DSM 19594 glycosyl transferase family protein YP_004658567.1 5975103 D 761193 CDS YP_004658568.1 338214505 10873687 complement(5975971..5976828) 1 NC_015703.1 PFAM: Cytochrome c; InterPro IPR012577; KEGG: sli:Slin_0395 NIPSNAP family containing protein; PFAM: NIPSNAP; SPTR: NIPSNAP family containing protein; cytochrome c class I 5976828 10873687 Runsl_5134 Runella slithyformis DSM 19594 cytochrome c class I YP_004658568.1 5975971 R 761193 CDS YP_004658569.1 338214506 10873688 complement(5976968..5977699) 1 NC_015703.1 PFAM: NIPSNAP; COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129; KEGG: sli:Slin_1715 glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase; SPTR: Glycerophosphoryl diester phosphodiesterase; NIPSNAP family containing protein 5977699 10873688 Runsl_5135 Runella slithyformis DSM 19594 NIPSNAP family containing protein YP_004658569.1 5976968 R 761193 CDS YP_004658570.1 338214507 10873689 5977751..5978605 1 NC_015703.1 PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: mrd:Mrad2831_3735 hypothetical protein; SPTR: uncharacterized protein; glycerophosphoryl diester phosphodiesterase 5978605 10873689 Runsl_5136 Runella slithyformis DSM 19594 glycerophosphoryl diester phosphodiesterase YP_004658570.1 5977751 D 761193 CDS YP_004658571.1 338214508 10873690 5978660..5979028 1 NC_015703.1 InterPro IPR003675; KEGG: cbh:CLC_0981 CAAX amino terminal protease; PFAM: Abortive infection protein; SPTR: Predicted metal-dependent membrane protease; hypothetical protein 5979028 10873690 Runsl_5137 Runella slithyformis DSM 19594 hypothetical protein YP_004658571.1 5978660 D 761193 CDS YP_004658572.1 338214509 10873691 complement(5979077..5979826) 1 NC_015703.1 PFAM: CAAX amino terminal protease; InterPro IPR002559; KEGG: app:CAP2UW1_1881 transposase IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase IS4 family protein; abortive infection protein 5979826 10873691 Runsl_5138 Runella slithyformis DSM 19594 abortive infection protein YP_004658572.1 5979077 R 761193 CDS YP_004658573.1 338214510 10873692 complement(5980316..5981332) 1 NC_015703.1 PFAM: Transposase DDE domain; InterPro IPR003675; KEGG: slg:SLGD_00275 hypothetical protein; PFAM: Abortive infection protein; SPTR: uncharacterized protein; transposase IS4 family protein 5981332 10873692 Runsl_5139 Runella slithyformis DSM 19594 transposase IS4 family protein YP_004658573.1 5980316 R 761193 CDS YP_004658574.1 338214511 10873693 complement(5981669..5982562) 1 NC_015703.1 PFAM: CAAX amino terminal protease; abortive infection protein 5982562 10873693 Runsl_5140 Runella slithyformis DSM 19594 abortive infection protein YP_004658574.1 5981669 R 761193 CDS YP_004658575.1 338214512 10873694 complement(5982820..5983074) 1 NC_015703.1 COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; manually curated; hypothetical protein 5983074 10873694 Runsl_5141 Runella slithyformis DSM 19594 hypothetical protein YP_004658575.1 5982820 R 761193 CDS YP_004658576.1 338214513 10873695 join(5983482..5983946,5983948..5984493) 1 NC_015703.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; Prodigal; manually curated; transposase 5984493 10873695 Runsl_5142 Runella slithyformis DSM 19594 transposase YP_004658576.1 5983482 D 761193 CDS YP_004658577.1 338214514 10873697 complement(5984707..5985147) 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR008030; KEGG: sli:Slin_3209 hypothetical protein; SPTR: uncharacterized protein; N-acetyltransferase GCN5 5985147 10873697 Runsl_5144 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004658577.1 5984707 R 761193 CDS YP_004658578.1 338214515 10873698 complement(5985198..5985845) 1 NC_015703.1 hypothetical protein 5985845 10873698 Runsl_5145 Runella slithyformis DSM 19594 hypothetical protein YP_004658578.1 5985198 R 761193 CDS YP_004658579.1 338214516 10873699 complement(5985861..5985998) 1 NC_015703.1 COGs: COG1285 membrane protein; InterPro IPR003416; KEGG: dfe:Dfer_2880 MgtC/SapB transporter; PFAM: MgtC/SapB transporter; SPTR: MgtC/SapB transporter; hypothetical protein 5985998 10873699 Runsl_5146 Runella slithyformis DSM 19594 hypothetical protein YP_004658579.1 5985861 R 761193 CDS YP_004658580.1 338214517 10873700 complement(5986029..5986661) 1 NC_015703.1 PFAM: MgtC family; COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR007865:IPR000994; KEGG: dfe:Dfer_2876 peptidase M24; PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; SPTR: Peptidase M24; MgtC/SapB transporter 5986661 10873700 Runsl_5147 Runella slithyformis DSM 19594 MgtC/SapB transporter YP_004658580.1 5986029 R 761193 CDS YP_004658581.1 338214518 10873701 complement(5986723..5988012) 1 NC_015703.1 PFAM: Aminopeptidase P, N-terminal domain; Metallopeptidase M24; COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000994; KEGG: osp:Odosp_3645 peptidase M24; PFAM: Peptidase M24, structural domain; PRIAM: Xaa-Pro aminopeptidase; SPTR: Xaa-Pro aminopeptidase; peptidase M24 5988012 10873701 Runsl_5148 Runella slithyformis DSM 19594 peptidase M24 YP_004658581.1 5986723 R 761193 CDS YP_004658582.1 338214519 10873702 complement(5988107..5989492) 1 NC_015703.1 PFAM: Aminopeptidase P, N-terminal domain; Metallopeptidase M24; COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: sli:Slin_3456 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Peptidase S8 and S53 subtilisin kexin sedolisin; Xaa-Pro aminopeptidase 5989492 10873702 Runsl_5149 Runella slithyformis DSM 19594 Xaa-Pro aminopeptidase YP_004658582.1 5988107 R 761193 CDS YP_004658583.1 338214520 10873703 5989579..5991126 1 NC_015703.1 PFAM: Subtilase; Prodigal; manually curated; peptidase S8 and S53 subtilisin kexin sedolisin 5991126 10873703 Runsl_5150 Runella slithyformis DSM 19594 peptidase S8 and S53 subtilisin kexin sedolisin YP_004658583.1 5989579 D 761193 CDS YP_004658584.1 338214521 10873705 complement(5991848..5992315) 1 NC_015703.1 KEGG: sli:Slin_5166 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 5992315 10873705 Runsl_5152 Runella slithyformis DSM 19594 hypothetical protein YP_004658584.1 5991848 R 761193 CDS YP_004658585.1 338214522 10873706 5992367..5992690 1 NC_015703.1 COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR002646:IPR006674; KEGG: dfe:Dfer_2415 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; PFAM: Polynucleotide adenylyltransferase region; Metal-dependent phosphohydrolase, HD region, subdomain; SPTR: Polynucleotide adenylyltransferase/metal dependent phosphohydrolase; hypothetical protein 5992690 10873706 Runsl_5153 Runella slithyformis DSM 19594 hypothetical protein YP_004658585.1 5992367 D 761193 CDS YP_004658586.1 338214523 10873707 complement(5992697..5994112) 1 NC_015703.1 PFAM: HD domain; Poly A polymerase head domain; InterPro IPR018914; KEGG: sli:Slin_4879 hypothetical protein; PFAM: Protein of unknown function DUF2480; SPTR: uncharacterized protein; polynucleotide adenylyltransferase 5994112 10873707 Runsl_5154 Runella slithyformis DSM 19594 polynucleotide adenylyltransferase YP_004658586.1 5992697 R 761193 CDS YP_004658587.1 338214524 10873708 5994304..5994834 1 NC_015703.1 PFAM: Protein of unknown function (DUF2480); COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891; KEGG: sli:Slin_3023 hydroxymethylglutaryl-CoA lyase; PFAM: Pyruvate carboxyltransferase; PRIAM: Hydroxymethylglutaryl-CoA lyase; SPTR: Hydroxymethylglutaryl-CoA lyase; hypothetical protein 5994834 10873708 Runsl_5155 Runella slithyformis DSM 19594 hypothetical protein YP_004658587.1 5994304 D 761193 CDS YP_004658588.1 338214525 10873709 complement(5994883..5995728) 1 NC_015703.1 PFAM: HMGL-like; InterPro IPR003749; KEGG: cao:Celal_2741 thiamines protein; PFAM: ThiamineS; SPTR: ThiamineS protein; hydroxymethylglutaryl-CoA lyase 5995728 10873709 Runsl_5156 Runella slithyformis DSM 19594 hydroxymethylglutaryl-CoA lyase YP_004658588.1 5994883 R 761193 CDS YP_004658589.1 338214526 10873710 complement(5995828..5996070) 1 NC_015703.1 PFAM: ThiS family; TIGRFAM: molybdopterin converting factor, subunit 1, non-archaeal; COGs: COG1401 GTPase subunit of restriction endonuclease; InterPro IPR011704; KEGG: sli:Slin_4510 ATPase AAA; PFAM: ATPase associated with various cellular activities, AAA-5; SPTR: ATPase associated with various cellular activities AAA_5; sulfur transfer protein ThiS 5996070 10873710 Runsl_5157 Runella slithyformis DSM 19594 sulfur transfer protein ThiS YP_004658589.1 5995828 R 761193 CDS YP_004658590.1 338214527 10873711 complement(5996432..5998024) 1 NC_015703.1 PFAM: AAA domain (dynein-related subfamily); ATPase 5998024 10873711 Runsl_5158 Runella slithyformis DSM 19594 ATPase YP_004658590.1 5996432 R 761193 CDS YP_004658591.1 338214528 10873712 5998310..5998765 1 NC_015703.1 hypothetical protein 5998765 10873712 Runsl_5159 Runella slithyformis DSM 19594 hypothetical protein YP_004658591.1 5998310 D 761193 CDS YP_004658592.1 338214529 10873713 5999708..6000079 1 NC_015703.1 hypothetical protein 6000079 10873713 Runsl_5160 Runella slithyformis DSM 19594 hypothetical protein YP_004658592.1 5999708 D 761193 CDS YP_004658593.1 338214530 10873715 complement(6000327..6001010) 1 NC_015703.1 PFAM: DJ-1/PfpI family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: sli:Slin_5976 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: Response regulator receiver protein; isoprenoid biosynthesis protein with amidotransferase-like domain 6001010 10873715 Runsl_5161 Runella slithyformis DSM 19594 isoprenoid biosynthesis protein with amidotransferase-like domain YP_004658593.1 6000327 R 761193 CDS YP_004658594.1 338214531 10873716 6001486..6002406 1 NC_015703.1 PFAM: LytTr DNA-binding domain; InterPro IPR002591; KEGG: dfe:Dfer_3007 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase; response regulator receiver protein 6002406 10873716 Runsl_5162 Runella slithyformis DSM 19594 response regulator receiver protein YP_004658594.1 6001486 D 761193 CDS YP_004658595.1 338214532 10873717 6002514..6004157 1 NC_015703.1 PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase; InterPro IPR019734:IPR001440:IPR013105; KEGG: sli:Slin_1475 hypothetical protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; type I phosphodiesterase/nucleotide pyrophosphatase 6004157 10873717 Runsl_5163 Runella slithyformis DSM 19594 type I phosphodiesterase/nucleotide pyrophosphatase YP_004658595.1 6002514 D 761193 CDS YP_004658596.1 338214533 10873718 6004295..6005701 1 NC_015703.1 PFAM: Tetratricopeptide repeat; COGs: COG0366 Glycosidase; InterPro IPR006589:IPR015171:IPR006047:IPR019492; KEGG: sli:Slin_2883 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic region; Cyclomaltodextrinase, N-terminal; Cyclo-malto-dextrinase, C-terminal; PRIAM: Cyclomaltodextrinase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; SPTR: Alpha amylase catalytic region; hypothetical protein 6005701 10873718 Runsl_5164 Runella slithyformis DSM 19594 hypothetical protein YP_004658596.1 6004295 D 761193 CDS YP_004658597.1 338214534 10873719 complement(6005724..6007598) 1 NC_015703.1 PFAM: Cyclomaltodextrinase, N-terminal; Alpha amylase, catalytic domain; Cyclo-malto-dextrinase C-terminal domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: dfe:Dfer_5280 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; cyclomaltodextrinase 6007598 10873719 Runsl_5165 Runella slithyformis DSM 19594 cyclomaltodextrinase YP_004658597.1 6005724 R 761193 CDS YP_004658598.1 338214535 10873720 complement(6007689..6008558) 1 NC_015703.1 PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR006402:IPR005834; KEGG: dfe:Dfer_2943 HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; manually curated; AraC family transcriptional regulator 6008558 10873720 Runsl_5166 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004658598.1 6007689 R 761193 CDS YP_004658599.1 338214536 10873721 6008723..6009397 1 NC_015703.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; InterPro IPR004360; KEGG: sli:Slin_3076 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; HAD superfamily hydrolase 6009397 10873721 Runsl_5167 Runella slithyformis DSM 19594 HAD superfamily hydrolase YP_004658599.1 6008723 D 761193 CDS YP_004658600.1 338214537 10873722 6009419..6009808 1 NC_015703.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; InterPro IPR011701; KEGG: sli:Slin_3423 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; Glyoxalase/bleomycin resistance protein/dioxygenase 6009808 10873722 Runsl_5168 Runella slithyformis DSM 19594 Glyoxalase/bleomycin resistance protein/dioxygenase YP_004658600.1 6009419 D 761193 CDS YP_004658601.1 338214538 10873723 6009884..6011041 1 NC_015703.1 PFAM: Major Facilitator Superfamily; KEGG: chu:CHU_2843 hypothetical protein; SPTR: uncharacterized protein; major facilitator superfamily protein 6011041 10873723 Runsl_5169 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004658601.1 6009884 D 761193 CDS YP_004658602.1 338214539 10873724 6011111..6011917 1 NC_015703.1 InterPro IPR002482:IPR018392; KEGG: dfe:Dfer_5051 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Peptidoglycan-binding LysM; hypothetical protein 6011917 10873724 Runsl_5170 Runella slithyformis DSM 19594 hypothetical protein YP_004658602.1 6011111 D 761193 CDS YP_004658603.1 338214540 10873725 6011914..6012975 1 NC_015703.1 PFAM: LysM domain; COGs: COG1597 Sphingosine kinase; InterPro IPR001206:IPR005218; KEGG: sli:Slin_0403 diacylglycerol kinase; PFAM: Diacylglycerol kinase, catalytic region; SMART: Diacylglycerol kinase, catalytic region; SPTR: Diacylglycerol kinase catalytic region; TIGRFAM: Conserved hypothetical protein CHP00147; peptidoglycan-binding lysin domain-containing protein 6012975 10873725 Runsl_5171 Runella slithyformis DSM 19594 peptidoglycan-binding lysin domain-containing protein YP_004658603.1 6011914 D 761193 CDS YP_004658604.1 338214541 10873726 6012972..6013859 1 NC_015703.1 PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: lipid kinase, YegS/Rv2252/BmrU family; COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); InterPro IPR010227:IPR001750; KEGG: sli:Slin_4908 proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: Proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: NADH-quinone oxidoreductase, chain M; hypothetical protein 6013859 10873726 Runsl_5172 Runella slithyformis DSM 19594 hypothetical protein YP_004658604.1 6012972 D 761193 CDS YP_004658605.1 338214542 10873727 complement(6013881..6015464) 1 NC_015703.1 PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR003945:IPR001516:IPR001750; KEGG: sli:Slin_4909 proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; PRIAM: NADH dehydrogenase (quinone); SPTR: Proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; proton-translocating NADH-quinone oxidoreductase subunit M 6015464 10873727 Runsl_5173 Runella slithyformis DSM 19594 proton-translocating NADH-quinone oxidoreductase subunit M YP_004658605.1 6013881 R 761193 CDS YP_004658606.1 338214543 10873728 complement(6015512..6017491) 1 NC_015703.1 PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: sli:Slin_2494 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; proton-translocating NADH-quinone oxidoreductase subunit L 6017491 10873728 Runsl_5174 Runella slithyformis DSM 19594 proton-translocating NADH-quinone oxidoreductase subunit L YP_004658606.1 6015512 R 761193 CDS YP_004658607.1 338214544 10873729 complement(6017577..6018419) 1 NC_015703.1 PFAM: alpha/beta hydrolase fold; KEGG: sli:Slin_0364 hypothetical protein; SPTR: uncharacterized protein; alpha/beta hydrolase 6018419 10873729 Runsl_5175 Runella slithyformis DSM 19594 alpha/beta hydrolase YP_004658607.1 6017577 R 761193 CDS YP_004658608.1 338214545 10873730 6018515..6020392 1 NC_015703.1 InterPro IPR000835; KEGG: dfe:Dfer_2423 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; hypothetical protein 6020392 10873730 Runsl_5176 Runella slithyformis DSM 19594 hypothetical protein YP_004658608.1 6018515 D 761193 CDS YP_004658609.1 338214546 10873731 6020466..6020921 1 NC_015703.1 PFAM: MarR family; COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: dfe:Dfer_2422 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YceI family protein; regulatory protein MarR 6020921 10873731 Runsl_5177 Runella slithyformis DSM 19594 regulatory protein MarR YP_004658609.1 6020466 D 761193 CDS YP_004658610.1 338214547 10873732 6021030..6021650 1 NC_015703.1 PFAM: YceI-like domain; COGs: COG4642 conserved hypothetical protein; InterPro IPR003409; KEGG: sli:Slin_6615 hypothetical protein; PFAM: MORN motif; SMART: MORN motif; SPTR: MORN repeat-containing protein; hypothetical protein 6021650 10873732 Runsl_5178 Runella slithyformis DSM 19594 hypothetical protein YP_004658610.1 6021030 D 761193 CDS YP_004658611.1 338214548 10873733 6021762..6022919 1 NC_015703.1 PFAM: Peptidase M48; MORN repeat; COGs: COG1801 conserved hypothetical protein; InterPro IPR002763; KEGG: sli:Slin_5530 hypothetical protein; PFAM: Protein of unknown function DUF72; SPTR: uncharacterized protein; MORN repeat-containing protein 6022919 10873733 Runsl_5179 Runella slithyformis DSM 19594 MORN repeat-containing protein YP_004658611.1 6021762 D 761193 CDS YP_004658612.1 338214549 10873734 6022952..6023866 1 NC_015703.1 PFAM: Protein of unknown function DUF72; InterPro IPR017941; KEGG: sli:Slin_4885 Rieske (2Fe-2S) iron-sulphur domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Rieske (2Fe-2S) iron-sulphur domain protein; hypothetical protein 6023866 10873734 Runsl_5180 Runella slithyformis DSM 19594 hypothetical protein YP_004658612.1 6022952 D 761193 CDS YP_004658613.1 338214550 10873735 6024015..6024518 1 NC_015703.1 PFAM: Rieske [2Fe-2S] domain; KEGG: dfe:Dfer_4137 hypothetical protein; SPTR: uncharacterized protein; Rieske (2Fe-2S) domain-containing protein 6024518 10873735 Runsl_5181 Runella slithyformis DSM 19594 Rieske (2Fe-2S) domain-containing protein YP_004658613.1 6024015 D 761193 CDS YP_004658614.1 338214551 10873736 6024589..6025491 1 NC_015703.1 InterPro IPR007372; KEGG: dfe:Dfer_4138 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YceI family protein; hypothetical protein 6025491 10873736 Runsl_5182 Runella slithyformis DSM 19594 hypothetical protein YP_004658614.1 6024589 D 761193 CDS YP_004658615.1 338214552 10873737 6025541..6026098 1 NC_015703.1 PFAM: YceI-like domain; InterPro IPR010496; KEGG: dfe:Dfer_4583 protein of unknown function DUF1080; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; hypothetical protein 6026098 10873737 Runsl_5183 Runella slithyformis DSM 19594 hypothetical protein YP_004658615.1 6025541 D 761193 CDS YP_004658616.1 338214553 10873738 6026222..6026917 1 NC_015703.1 PFAM: Domain of Unknown Function (DUF1080); COGs: COG0623 Enoyl-(acyl-carrier-protein); KEGG: lby:Lbys_2165 enoyl-(acyl-carrier-protein) reductase (NADH); PRIAM: Enoyl-[acyl-carrier-protein] reductase (NADH); SPTR: Enoyl-[acyl-carrier-protein] reductase [NADH]; hypothetical protein 6026917 10873738 Runsl_5184 Runella slithyformis DSM 19594 hypothetical protein YP_004658616.1 6026222 D 761193 CDS YP_004658617.1 338214554 10873739 complement(6026987..6027793) 1 NC_015703.1 COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_3751 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; enoyl-ACP reductase 6027793 10873739 Runsl_5185 Runella slithyformis DSM 19594 enoyl-ACP reductase YP_004658617.1 6026987 R 761193 CDS YP_004658618.1 338214555 10873740 complement(6027924..6028583) 1 NC_015703.1 COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR004634:IPR004635:IPR002142; KEGG: dfe:Dfer_2800 signal peptide peptidase SppA, 67K type; PFAM: Peptidase S49; SPTR: Signal peptide peptidase SppA, 67K type; TIGRFAM: Peptidase S49, protease IV; Peptidase S49, SppA; ABC transporter 6028583 10873740 Runsl_5186 Runella slithyformis DSM 19594 ABC transporter YP_004658618.1 6027924 R 761193 CDS YP_004658619.1 338214556 10873741 6029162..6030919 1 NC_015703.1 PFAM: Peptidase S49; TIGRFAM: signal peptide peptidase SppA, 36K type; signal peptide peptidase SppA, 67K type; SPTR: Transposase IS4 family protein; signal peptide peptidase SppA, 67K type 6030919 10873741 Runsl_5187 Runella slithyformis DSM 19594 signal peptide peptidase SppA, 67K type YP_004658619.1 6029162 D 761193 CDS YP_004658620.1 338214557 10873742 6031028..6032374 1 NC_015703.1 hypothetical protein 6032374 10873742 Runsl_5188 Runella slithyformis DSM 19594 hypothetical protein YP_004658620.1 6031028 D 761193 CDS YP_004658621.1 338214558 10873744 6032662..6032994 1 NC_015703.1 COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: cao:Celal_2798 transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase; hypothetical protein 6032994 10873744 Runsl_5189 Runella slithyformis DSM 19594 hypothetical protein YP_004658621.1 6032662 D 761193 CDS YP_004658622.1 338214559 10873745 6033004..6033987 1 NC_015703.1 PFAM: Transposase; transposase IS204/IS1001/IS1096/IS1165 family protein 6033987 10873745 Runsl_5190 Runella slithyformis DSM 19594 transposase IS204/IS1001/IS1096/IS1165 family protein YP_004658622.1 6033004 D 761193 CDS YP_004658623.1 338214560 10873746 6034159..6034377 1 NC_015703.1 COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594:IPR011712; KEGG: sli:Slin_6208 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; SMART: ATP-binding region, ATPase-like; SPTR: Two-component system sensor histidine kinase; hypothetical protein 6034377 10873746 Runsl_5191 Runella slithyformis DSM 19594 hypothetical protein YP_004658623.1 6034159 D 761193 CDS YP_004658624.1 338214561 10873747 6034406..6035668 1 NC_015703.1 PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: rca:Rcas_1142 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SPTR: Two-component system response regulator, LuxR family; signal transduction histidine kinase 6035668 10873747 Runsl_5192 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004658624.1 6034406 D 761193 CDS YP_004658625.1 338214562 10873748 6035750..6036391 1 NC_015703.1 PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family; KEGG: pam:PANA_2363 hypothetical protein; SPTR: uncharacterized protein; LuxR family transcriptional regulator 6036391 10873748 Runsl_5193 Runella slithyformis DSM 19594 LuxR family transcriptional regulator YP_004658625.1 6035750 D 761193 CDS YP_004658626.1 338214563 10873749 complement(6036401..6037156) 1 NC_015703.1 COGs: COG0515 Serine/threonine protein kinase; InterPro IPR020635:IPR002290:IPR017442; KEGG: sli:Slin_2968 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; PRIAM: Calcium/calmodulin-dependent protein kinase; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, subgroup, catalytic domain; SPTR: Serine/threonine protein kinase; hypothetical protein 6037156 10873749 Runsl_5194 Runella slithyformis DSM 19594 hypothetical protein YP_004658626.1 6036401 R 761193 CDS YP_004658627.1 338214564 10873750 complement(6037170..6038681) 1 NC_015703.1 PFAM: Protein kinase domain; KEGG: sli:Slin_3310 hypothetical protein; SPTR: uncharacterized protein; serine/threonine protein kinase 6038681 10873750 Runsl_5195 Runella slithyformis DSM 19594 serine/threonine protein kinase YP_004658627.1 6037170 R 761193 CDS YP_004658628.1 338214565 10873751 complement(6038699..6039502) 1 NC_015703.1 hypothetical protein 6039502 10873751 Runsl_5196 Runella slithyformis DSM 19594 hypothetical protein YP_004658628.1 6038699 R 761193 CDS YP_004658629.1 338214566 10873752 complement(6039509..6039880) 1 NC_015703.1 hypothetical protein 6039880 10873752 Runsl_5197 Runella slithyformis DSM 19594 hypothetical protein YP_004658629.1 6039509 R 761193 CDS YP_004658630.1 338214567 10873753 6040009..6040101 1 NC_015703.1 KEGG: chu:CHU_2528 hypothetical protein; SPTR: CHU large protein; uncharacterized; hypothetical protein 6040101 10873753 Runsl_5198 Runella slithyformis DSM 19594 hypothetical protein YP_004658630.1 6040009 D 761193 CDS YP_004658631.1 338214568 10873754 6040091..6043687 1 NC_015703.1 KEGG: dal:Dalk_5199 hypothetical protein; SPTR: Ribonuclease, Rne/Rng family protein; hypothetical protein 6043687 10873754 Runsl_5199 Runella slithyformis DSM 19594 hypothetical protein YP_004658631.1 6040091 D 761193 CDS YP_004658632.1 338214569 10873755 6043684..6045468 1 NC_015703.1 COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: aba:Acid345_4155 transcriptional regulatory protein-like; SPTR: WD40-like Beta Propeller; hypothetical protein 6045468 10873755 Runsl_5200 Runella slithyformis DSM 19594 hypothetical protein YP_004658632.1 6043684 D 761193 CDS YP_004658633.1 338214570 10873756 6045530..6046507 1 NC_015703.1 PFAM: WD40-like Beta Propeller Repeat; KEGG: dfe:Dfer_3581 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6046507 10873756 Runsl_5201 Runella slithyformis DSM 19594 hypothetical protein YP_004658633.1 6045530 D 761193 CDS YP_004658634.1 338214571 10873757 6046540..6047679 1 NC_015703.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: dfe:Dfer_3582 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; hypothetical protein 6047679 10873757 Runsl_5202 Runella slithyformis DSM 19594 hypothetical protein YP_004658634.1 6046540 D 761193 CDS YP_004658635.1 338214572 10873758 6047679..6048998 1 NC_015703.1 PFAM: OmpA family; InterPro IPR011647; KEGG: cyn:Cyan7425_4935 KWG repeat-containing protein; PFAM: KWG Leptospira; SPTR: KWG repeat domain protein; OmpA/MotB domain-containing protein 6048998 10873758 Runsl_5203 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004658635.1 6047679 D 761193 CDS YP_004658636.1 338214573 10873759 6049038..6050066 1 NC_015703.1 PFAM: KWG Leptospira; InterPro IPR011600; KEGG: sli:Slin_2969 peptidase C14 caspase catalytic subunit P20; PFAM: Peptidase C14, caspase catalytic; SPTR: Peptidase C14 caspase catalytic subunit p20; KWG repeat-containing protein 6050066 10873759 Runsl_5204 Runella slithyformis DSM 19594 KWG repeat-containing protein YP_004658636.1 6049038 D 761193 CDS YP_004658637.1 338214574 10873760 complement(6050078..6050953) 1 NC_015703.1 PFAM: Caspase domain; COGs: COG0631 Serine/threonine protein phosphatase; InterPro IPR001932; KEGG: pdi:BDI_1037 serine/threonine phosphatase; SMART: Protein phosphatase 2C-related; SPTR: uncharacterized protein; peptidase C14 caspase catalytic subunit p20 6050953 10873760 Runsl_5205 Runella slithyformis DSM 19594 peptidase C14 caspase catalytic subunit p20 YP_004658637.1 6050078 R 761193 CDS YP_004658638.1 338214575 10873761 complement(6050919..6052508) 1 NC_015703.1 PFAM: Protein phosphatase 2C; InterPro IPR000253; KEGG: pdi:BDI_1036 hypothetical protein; PFAM: Forkhead-associated; SPTR: FHA domain protein; Ser/Thr phosphatase 6052508 10873761 Runsl_5206 Runella slithyformis DSM 19594 Ser/Thr phosphatase YP_004658638.1 6050919 R 761193 CDS YP_004658639.1 338214576 10873762 complement(6052517..6053215) 1 NC_015703.1 PFAM: FHA domain; KEGG: sli:Slin_2972 hypothetical protein; SPTR: uncharacterized protein; forkhead-associated protein 6053215 10873762 Runsl_5207 Runella slithyformis DSM 19594 forkhead-associated protein YP_004658639.1 6052517 R 761193 CDS YP_004658640.1 338214577 10873763 complement(6053230..6054618) 1 NC_015703.1 InterPro IPR000253; KEGG: pdi:BDI_1034 ABC transporter ATP-binding protein; PFAM: Forkhead-associated; SMART: Forkhead-associated; SPTR: uncharacterized protein; hypothetical protein 6054618 10873763 Runsl_5208 Runella slithyformis DSM 19594 hypothetical protein YP_004658640.1 6053230 R 761193 CDS YP_004658641.1 338214578 10873764 complement(6054638..6055372) 1 NC_015703.1 PFAM: FHA domain; InterPro IPR000601:IPR002035; KEGG: sli:Slin_1773 von Willebrand factor type A; PFAM: PKD; von Willebrand factor, type A; SMART: von Willebrand factor, type A; PKD; SPTR: von Willebrand factor type A; forkhead-associated protein 6055372 10873764 Runsl_5209 Runella slithyformis DSM 19594 forkhead-associated protein YP_004658641.1 6054638 R 761193 CDS YP_004658642.1 338214579 10873765 complement(6055401..6056975) 1 NC_015703.1 PFAM: von Willebrand factor type A domain; PKD domain; COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterPro IPR003593:IPR003959:IPR013093:IPR019489; KEGG: dfe:Dfer_3576 ATPase AAA-2 domain protein; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent protease; PKD domain-containing protein 6056975 10873765 Runsl_5210 Runella slithyformis DSM 19594 PKD domain-containing protein YP_004658642.1 6055401 R 761193 CDS YP_004658643.1 338214580 10873766 6057176..6059680 1 NC_015703.1 PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ATPase associated with various cellular activities (AAA); ATPase AAA 6059680 10873766 Runsl_5211 Runella slithyformis DSM 19594 ATPase AAA YP_004658643.1 6057176 D 761193 CDS YP_004658644.1 338214581 10873767 6059685..6060629 1 NC_015703.1 KEGG: bfr:BF1956 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6060629 10873767 Runsl_5212 Runella slithyformis DSM 19594 hypothetical protein YP_004658644.1 6059685 D 761193 CDS YP_004658645.1 338214582 10873768 6060683..6061138 1 NC_015703.1 KEGG: dfe:Dfer_3586 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6061138 10873768 Runsl_5213 Runella slithyformis DSM 19594 hypothetical protein YP_004658645.1 6060683 D 761193 CDS YP_004658646.1 338214583 10873769 6061192..6062565 1 NC_015703.1 PFAM: Phage tail sheath protein; KEGG: cpi:Cpin_4871 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6062565 10873769 Runsl_5214 Runella slithyformis DSM 19594 hypothetical protein YP_004658646.1 6061192 D 761193 CDS YP_004658647.1 338214584 10873770 6062606..6062998 1 NC_015703.1 KEGG: lbj:LBJ_0272 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6062998 10873770 Runsl_5215 Runella slithyformis DSM 19594 hypothetical protein YP_004658647.1 6062606 D 761193 CDS YP_004658648.1 338214585 10873771 6063102..6064139 1 NC_015703.1 COGs: COG3501 conserved hypothetical protein; InterPro IPR006533; KEGG: cpi:Cpin_5894 rhs element Vgr protein; PFAM: Rhs element Vgr protein; SPTR: Rhs element Vgr protein; TIGRFAM: Rhs element Vgr protein; hypothetical protein 6064139 10873771 Runsl_5216 Runella slithyformis DSM 19594 hypothetical protein YP_004658648.1 6063102 D 761193 CDS YP_004658649.1 338214586 10873772 6064212..6066005 1 NC_015703.1 PFAM: Phage late control gene D protein (GPD); Phage-related baseplate assembly protein; Rhs element Vgr protein 6066005 10873772 Runsl_5217 Runella slithyformis DSM 19594 Rhs element Vgr protein YP_004658649.1 6064212 D 761193 CDS YP_004658650.1 338214587 10873773 6066018..6066536 1 NC_015703.1 InterPro IPR007048; KEGG: cao:Celal_3741 gpW/GP25 family protein; PFAM: GPW/gp25; SPTR: GpW/GP25 family protein; hypothetical protein 6066536 10873773 Runsl_5218 Runella slithyformis DSM 19594 hypothetical protein YP_004658650.1 6066018 D 761193 CDS YP_004658651.1 338214588 10873774 6066551..6067174 1 NC_015703.1 PFAM: Gene 25-like lysozyme; KEGG: cpi:Cpin_2305 hypothetical protein; SPTR: uncharacterized protein; GPW/gp25 family protein 6067174 10873774 Runsl_5219 Runella slithyformis DSM 19594 GPW/gp25 family protein YP_004658651.1 6066551 D 761193 CDS YP_004658652.1 338214589 10873775 6067201..6069024 1 NC_015703.1 KEGG: cpi:Cpin_2308 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6069024 10873775 Runsl_5220 Runella slithyformis DSM 19594 hypothetical protein YP_004658652.1 6067201 D 761193 CDS YP_004658653.1 338214590 10873776 6069037..6070038 1 NC_015703.1 KEGG: dfe:Dfer_3591 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6070038 10873776 Runsl_5221 Runella slithyformis DSM 19594 hypothetical protein YP_004658653.1 6069037 D 761193 CDS YP_004658654.1 338214591 10873777 6070061..6070909 1 NC_015703.1 KEGG: sli:Slin_4112 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6070909 10873777 Runsl_5222 Runella slithyformis DSM 19594 hypothetical protein YP_004658654.1 6070061 D 761193 CDS YP_004658655.1 338214592 10873778 6070915..6072027 1 NC_015703.1 PFAM: Bacterial protein of unknown function (DUF876); InterPro IPR008727; KEGG: cpi:Cpin_3928 PaaR repeat-containing protein; PFAM: PAAR motif; SPTR: PAAR repeat-containing protein; hypothetical protein 6072027 10873778 Runsl_5223 Runella slithyformis DSM 19594 hypothetical protein YP_004658655.1 6070915 D 761193 CDS YP_004658656.1 338214593 10873779 6072044..6072343 1 NC_015703.1 PFAM: PAAR motif; PAAR repeat-containing protein 6072343 10873779 Runsl_5224 Runella slithyformis DSM 19594 PAAR repeat-containing protein YP_004658656.1 6072044 D 761193 CDS YP_004658657.1 338214594 10873780 6072383..6072862 1 NC_015703.1 hypothetical protein 6072862 10873780 Runsl_5225 Runella slithyformis DSM 19594 hypothetical protein YP_004658657.1 6072383 D 761193 CDS YP_004658658.1 338214595 10873781 6072879..6073358 1 NC_015703.1 InterPro IPR001763; KEGG: sli:Slin_1457 rhodanese; SMART: Rhodanese-like; SPTR: Rhodanese domain-containing protein; manually curated; hypothetical protein 6073358 10873781 Runsl_5226 Runella slithyformis DSM 19594 hypothetical protein YP_004658658.1 6072879 D 761193 CDS YP_004658659.1 338214596 10873782 complement(6073390..6073692) 1 NC_015703.1 PFAM: Rhodanese-like domain; Prodigal; manually curated; rhodanese-like protein 6073692 10873782 Runsl_5227 Runella slithyformis DSM 19594 rhodanese-like protein YP_004658659.1 6073390 R 761193 CDS YP_004658660.1 338214597 10873784 complement(6075169..6075573) 1 NC_015703.1 InterPro IPR007484; KEGG: dfe:Dfer_3904 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28; hypothetical protein 6075573 10873784 Runsl_5229 Runella slithyformis DSM 19594 hypothetical protein YP_004658660.1 6075169 R 761193 CDS YP_004658661.1 338214598 10873785 complement(6075603..6076604) 1 NC_015703.1 PFAM: Peptidase M28; COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: psa:PST_4158 sugar acetylase; PFAM: Acyltransferase 3; SPTR: Sugar acetylase; peptidase M28 6076604 10873785 Runsl_5230 Runella slithyformis DSM 19594 peptidase M28 YP_004658661.1 6075603 R 761193 CDS YP_004658662.1 338214599 10873786 complement(6076724..6077767) 1 NC_015703.1 PFAM: Acyltransferase; KEGG: sli:Slin_5460 hypothetical protein; SPTR: uncharacterized protein; acyltransferase 6077767 10873786 Runsl_5231 Runella slithyformis DSM 19594 acyltransferase YP_004658662.1 6076724 R 761193 CDS YP_004658663.1 338214600 10873787 complement(6078170..6079189) 1 NC_015703.1 InterPro IPR006644:IPR013529; KEGG: dfe:Dfer_3550 dystroglycan-type cadherin domain protein; PFAM: Glycoside hydrolase, family 42, N-terminal; SMART: Dystroglycan-type cadherin-like; SPTR: Dystroglycan-type cadherin domain protein; hypothetical protein 6079189 10873787 Runsl_5232 Runella slithyformis DSM 19594 hypothetical protein YP_004658663.1 6078170 R 761193 CDS YP_004658664.1 338214601 10873788 complement(6079347..6082442) 1 NC_015703.1 PFAM: Beta-galactosidase; InterPro IPR013529; KEGG: dfe:Dfer_3550 dystroglycan-type cadherin domain protein; PFAM: Glycoside hydrolase, family 42, N-terminal; SPTR: Dystroglycan-type cadherin domain protein; glycoside hydrolase 6082442 10873788 Runsl_5233 Runella slithyformis DSM 19594 glycoside hydrolase YP_004658664.1 6079347 R 761193 CDS YP_004658665.1 338214602 10873789 complement(6082452..6085007) 1 NC_015703.1 PFAM: Beta-galactosidase; Ig domain; glycoside hydrolase 6085007 10873789 Runsl_5234 Runella slithyformis DSM 19594 glycoside hydrolase YP_004658665.1 6082452 R 761193 CDS YP_004658666.1 338214603 10873790 complement(6085117..6085629) 1 NC_015703.1 COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR002818; KEGG: pjd:Pjdr2_0637 ThiJ/PfpI domain protein; PFAM: ThiJ/PfpI; SPTR: Transcriptional regulator, AraC family protein; hypothetical protein 6085629 10873790 Runsl_5235 Runella slithyformis DSM 19594 hypothetical protein YP_004658666.1 6085117 R 761193 CDS YP_004658667.1 338214604 10873791 complement(6085820..6086431) 1 NC_015703.1 PFAM: DJ-1/PfpI family; InterPro IPR000620; KEGG: cpi:Cpin_4054 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: uncharacterized protein; ThiJ/PfpI domain-containing protein 6086431 10873791 Runsl_5236 Runella slithyformis DSM 19594 ThiJ/PfpI domain-containing protein YP_004658667.1 6085820 R 761193 CDS YP_004658668.1 338214605 10873792 complement(6086580..6087497) 1 NC_015703.1 PFAM: EamA-like transporter family; COGs: COG1496 conserved hypothetical protein; InterPro IPR003730; KEGG: sli:Slin_3530 hypothetical protein; PFAM: Multi-copper polyphenol oxidoreductase, laccase; SPTR: uncharacterized protein; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; hypothetical protein 6087497 10873792 Runsl_5237 Runella slithyformis DSM 19594 hypothetical protein YP_004658668.1 6086580 R 761193 CDS YP_004658669.1 338214606 10873793 complement(6087572..6088321) 1 NC_015703.1 PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: uncharacterized protein, YfiH family; COGs: COG0461 Orotate phosphoribosyltransferase; HAMAP: Orotate phosphoribosyltransferase; InterPro IPR004467:IPR000836; KEGG: sli:Slin_1439 orotate phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; PRIAM: Orotate phosphoribosyltransferase; SPTR: Orotate phosphoribosyltransferase; TIGRFAM: Orotate phosphoribosyl transferase; multi-copper polyphenol oxidoreductase, laccase 6088321 10873793 Runsl_5238 Runella slithyformis DSM 19594 multi-copper polyphenol oxidoreductase, laccase YP_004658669.1 6087572 R 761193 CDS YP_004658670.1 338214607 10873794 complement(6088334..6088990) 1 NC_015703.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: orotate phosphoribosyltransferase; COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: sli:Slin_3549 UspA domain protein; PFAM: UspA; SPTR: UspA domain protein; orotate phosphoribosyltransferase 6088990 10873794 Runsl_5239 Runella slithyformis DSM 19594 orotate phosphoribosyltransferase YP_004658670.1 6088334 R 761193 CDS YP_004658671.1 338214608 10873795 complement(6089091..6089903) 1 NC_015703.1 PFAM: Universal stress protein family; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR013973; KEGG: dfe:Dfer_5047 response regulator receiver protein; PFAM: PglZ domain; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; UspA domain-containing protein 6089903 10873795 Runsl_5240 Runella slithyformis DSM 19594 UspA domain-containing protein YP_004658671.1 6089091 R 761193 CDS YP_004658672.1 338214609 10873796 6090114..6091676 1 NC_015703.1 PFAM: PglZ domain; Response regulator receiver domain; InterPro IPR012910; KEGG: dfe:Dfer_2367 hypothetical protein; PFAM: TonB-dependent receptor, plug; SPTR: uncharacterized protein; response regulator receiver protein 6091676 10873796 Runsl_5241 Runella slithyformis DSM 19594 response regulator receiver protein YP_004658672.1 6090114 D 761193 CDS YP_004658673.1 338214610 10873797 complement(6091799..6094180) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; KEGG: sli:Slin_2297 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 6094180 10873797 Runsl_5242 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004658673.1 6091799 R 761193 CDS YP_004658674.1 338214611 10873798 6094256..6094903 1 NC_015703.1 COGs: COG2217 Cation transport ATPase; InterPro IPR008250:IPR005834; KEGG: dfe:Dfer_5325 copper-exporting ATPase; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Copper-exporting ATPase; hypothetical protein 6094903 10873798 Runsl_5243 Runella slithyformis DSM 19594 hypothetical protein YP_004658674.1 6094256 D 761193 CDS YP_004658675.1 338214612 10873799 6095020..6097494 1 NC_015703.1 PFAM: E1-E2 ATPase; Heavy-metal-associated domain; metal-binding domain of cation transport ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: sli:Slin_1483 hypothetical protein; SPTR: uncharacterized protein; manually curated; Copper-exporting ATPase 6097494 10873799 Runsl_5244 Runella slithyformis DSM 19594 Copper-exporting ATPase YP_004658675.1 6095020 D 761193 CDS YP_004658676.1 338214613 10873800 complement(6097491..6098255) 1 NC_015703.1 InterPro IPR004714; KEGG: dfe:Dfer_5324 cytochrome oxidase maturation protein, cbb3-type; PFAM: Cytochrome oxidase maturation protein cbb3-type; SPTR: Cytochrome oxidase maturation protein, cbb3-type; TIGRFAM: Cytochrome oxidase maturation protein cbb3-type; hypothetical protein 6098255 10873800 Runsl_5245 Runella slithyformis DSM 19594 hypothetical protein YP_004658676.1 6097491 R 761193 CDS YP_004658677.1 338214614 10873801 6098539..6098703 1 NC_015703.1 PFAM: Cytochrome oxidase maturation protein cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; COGs: COG3278 Cbb3-type cytochrome oxidase subunit 1; InterPro IPR004677:IPR003468:IPR000883; KEGG: dfe:Dfer_5323 bifunctional cbb3-type cytochrome c oxidase subunit I/II; PFAM: Cytochrome C oxidase, monohaem subunit/FixO; Cytochrome c oxidase, subunit I; SPTR: Cytochrome c oxidase, cbb3-type, subunit I; TIGRFAM: Cytochrome c oxidase cbb3-type, subunit I; Cytochrome C oxidase, monohaem subunit/FixO; cbb3-type cytochrome oxidase maturation protein 6098703 10873801 Runsl_5246 Runella slithyformis DSM 19594 cbb3-type cytochrome oxidase maturation protein YP_004658677.1 6098539 D 761193 CDS YP_004658678.1 338214615 10873802 6098722..6100869 1 NC_015703.1 PFAM: Cytochrome C oxidase, mono-heme subunit/FixO; Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; cytochrome c oxidase, cbb3-type, subunit I; InterPro IPR003088; KEGG: dfe:Dfer_5322 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I; cytochrome c oxidase, cbb3-type subunit I 6100869 10873802 Runsl_5247 Runella slithyformis DSM 19594 cytochrome c oxidase, cbb3-type subunit I YP_004658678.1 6098722 D 761193 CDS YP_004658679.1 338214616 10873803 6100931..6101992 1 NC_015703.1 PFAM: Cytochrome c; Cbb3-type cytochrome oxidase component FixQ; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; COGs: COG0348 Polyferredoxin; InterPro IPR014116:IPR001450; KEGG: dfe:Dfer_5321 cytochrome c oxidase accessory protein CcoG; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: Cytochrome c oxidase accessory protein CcoG; TIGRFAM: Cytochrome c oxidase cbb3 type, accessory protein FixG; cytochrome c class I 6101992 10873803 Runsl_5248 Runella slithyformis DSM 19594 cytochrome c class I YP_004658679.1 6100931 D 761193 CDS YP_004658680.1 338214617 10873804 6102064..6103476 1 NC_015703.1 PFAM: Ubp3 associated protein Bre5; TIGRFAM: cytochrome c oxidase accessory protein FixG; KEGG: dfe:Dfer_5320 hypothetical protein; SPTR: uncharacterized protein; cytochrome c oxidase accessory protein CcoG 6103476 10873804 Runsl_5249 Runella slithyformis DSM 19594 cytochrome c oxidase accessory protein CcoG YP_004658680.1 6102064 D 761193 CDS YP_004658681.1 338214618 10873805 6103532..6103966 1 NC_015703.1 PFAM: FixH; COGs: COG2836 conserved hypothetical protein; KEGG: cly:Celly_2055 integral membrane protein; SPTR: uncharacterized protein; hypothetical protein 6103966 10873805 Runsl_5250 Runella slithyformis DSM 19594 hypothetical protein YP_004658681.1 6103532 D 761193 CDS YP_004658682.1 338214619 10873806 6104104..6104799 1 NC_015703.1 COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR006638:IPR004558:IPR007197:IPR010723; KEGG: dfe:Dfer_5318 coproporphyrinogen III oxidase; PFAM: HemN, C-terminal; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; hypothetical protein 6104799 10873806 Runsl_5251 Runella slithyformis DSM 19594 hypothetical protein YP_004658682.1 6104104 D 761193 CDS YP_004658683.1 338214620 10873807 6104992..6106353 1 NC_015703.1 PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR000014:IPR003661:IPR003594:IPR013767; KEGG: dfe:Dfer_5317 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; SPTR: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS; oxygen-independent coproporphyrinogen III oxidase 6106353 10873807 Runsl_5252 Runella slithyformis DSM 19594 oxygen-independent coproporphyrinogen III oxidase YP_004658683.1 6104992 D 761193 CDS YP_004658684.1 338214621 10873808 6106504..6107742 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR001789:IPR000595:IPR001808; KEGG: dfe:Dfer_5316 transcriptional regulator, Crp/Fnr family; PFAM: Signal transduction response regulator, receiver region; Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: Signal transduction response regulator, receiver region; Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SPTR: Transcriptional regulator, Crp/Fnr family; PAS/PAC sensor signal transduction histidine kinase 6107742 10873808 Runsl_5253 Runella slithyformis DSM 19594 PAS/PAC sensor signal transduction histidine kinase YP_004658684.1 6106504 D 761193 CDS YP_004658685.1 338214622 10873809 6107746..6108804 1 NC_015703.1 PFAM: Bacterial regulatory proteins, crp family; Response regulator receiver domain; Cyclic nucleotide-binding domain; COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_4779 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; Crp/Fnr family transcriptional regulator 6108804 10873809 Runsl_5254 Runella slithyformis DSM 19594 Crp/Fnr family transcriptional regulator YP_004658685.1 6107746 D 761193 CDS YP_004658686.1 338214623 10873810 complement(6108905..6110845) 1 NC_015703.1 PFAM: ABC transporter; KEGG: sli:Slin_4259 hypothetical protein; SPTR: uncharacterized protein; ABC transporter 6110845 10873810 Runsl_5255 Runella slithyformis DSM 19594 ABC transporter YP_004658686.1 6108905 R 761193 CDS YP_004658687.1 338214624 10873811 6111101..6112102 1 NC_015703.1 COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; HAMAP: Glutaminyl-tRNA synthetase; InterPro IPR004514:IPR020058:IPR020059; KEGG: dfe:Dfer_2503 glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; PRIAM: Glutamine--tRNA ligase; SPTR: Glutaminyl-tRNA synthetase; TIGRFAM: Glutaminyl-tRNA synthetase, class Ic; hypothetical protein 6112102 10873811 Runsl_5256 Runella slithyformis DSM 19594 hypothetical protein YP_004658687.1 6111101 D 761193 CDS YP_004658688.1 338214625 10873812 complement(6112160..6113893) 1 NC_015703.1 PFAM: tRNA synthetases class I (E and Q), catalytic domain; tRNA synthetases class I (E and Q), anti-codon binding domain; TIGRFAM: glutaminyl-tRNA synthetase; glutaminyl-tRNA synthetase 6113893 10873812 Runsl_5257 Runella slithyformis DSM 19594 glutaminyl-tRNA synthetase YP_004658688.1 6112160 R 761193 CDS YP_004658689.1 338214626 10873813 6113972..6114238 1 NC_015703.1 COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: sli:Slin_1005 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; PFAM: 6-pyruvoyl tetrahydropterin synthase-related; SPTR: uncharacterized protein; hypothetical protein 6114238 10873813 Runsl_5258 Runella slithyformis DSM 19594 hypothetical protein YP_004658689.1 6113972 D 761193 CDS YP_004658690.1 338214627 10873814 6114698..6115114 1 NC_015703.1 PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: 6-pyruvoyl tetrahydropterin synthase/QueD family protein; COGs: COG0302 GTP cyclohydrolase I; HAMAP: GTP cyclohydrolase I; InterPro IPR001474:IPR020602; KEGG: dfe:Dfer_0468 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; PRIAM: GTP cyclohydrolase I; SPTR: GTP cyclohydrolase 1 1; TIGRFAM: GTP cyclohydrolase I; hypothetical protein 6115114 10873814 Runsl_5259 Runella slithyformis DSM 19594 hypothetical protein YP_004658690.1 6114698 D 761193 CDS YP_004658691.1 338214628 10873815 6115077..6115772 1 NC_015703.1 PFAM: GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; InterPro IPR019734:IPR001440:IPR013105; KEGG: sli:Slin_3125 hypothetical protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; GTP cyclohydrolase I 6115772 10873815 Runsl_5260 Runella slithyformis DSM 19594 GTP cyclohydrolase I YP_004658691.1 6115077 D 761193 CDS YP_004658692.1 338214629 10873816 complement(6115799..6117313) 1 NC_015703.1 KEGG: sli:Slin_3425 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6117313 10873816 Runsl_5261 Runella slithyformis DSM 19594 hypothetical protein YP_004658692.1 6115799 R 761193 CDS YP_004658693.1 338214630 10873817 complement(6117310..6117939) 1 NC_015703.1 PFAM: Protein of unknown function (DUF820); KEGG: dfe:Dfer_2654 transcription elongation factor; SPTR: Transcription elongation factor; hypothetical protein 6117939 10873817 Runsl_5262 Runella slithyformis DSM 19594 hypothetical protein YP_004658693.1 6117310 R 761193 CDS YP_004658694.1 338214631 10873818 complement(6117983..6118426) 1 NC_015703.1 PFAM: Transcription elongation factor, GreA/GreB, C-term; COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: dfe:Dfer_0240 aldo/keto reductase; PFAM: Aldo/keto reductase; PRIAM: Aryl-alcohol dehydrogenase (NADP(+)); SPTR: Aldo/keto reductase; transcription elongation factor 6118426 10873818 Runsl_5263 Runella slithyformis DSM 19594 transcription elongation factor YP_004658694.1 6117983 R 761193 CDS YP_004658695.1 338214632 10873819 complement(6118526..6119548) 1 NC_015703.1 PFAM: Aldo/keto reductase; COGs: COG2135 conserved hypothetical protein; InterPro IPR003738; KEGG: sli:Slin_1581 hypothetical protein; PFAM: Protein of unknown function DUF159; SPTR: uncharacterized protein; aryl-alcohol dehydrogenase 6119548 10873819 Runsl_5264 Runella slithyformis DSM 19594 aryl-alcohol dehydrogenase YP_004658695.1 6118526 R 761193 CDS YP_004658696.1 338214633 10873820 6119690..6120436 1 NC_015703.1 PFAM: Uncharacterised ACR, COG2135; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); KEGG: dfe:Dfer_0244 alpha/beta hydrolase fold protein; SPTR: Alpha/beta hydrolase fold protein; hypothetical protein 6120436 10873820 Runsl_5265 Runella slithyformis DSM 19594 hypothetical protein YP_004658696.1 6119690 D 761193 CDS YP_004658697.1 338214634 10873821 6120506..6121417 1 NC_015703.1 PFAM: Prolyl oligopeptidase; COGs: COG3876 conserved hypothetical protein; InterPro IPR008302; KEGG: sli:Slin_0923 hypothetical protein; PFAM: Uncharacterised conserved protein UCP016719; SPTR: uncharacterized protein; alpha/beta hydrolase 6121417 10873821 Runsl_5266 Runella slithyformis DSM 19594 alpha/beta hydrolase YP_004658697.1 6120506 D 761193 CDS YP_004658698.1 338214635 10873822 6121585..6122808 1 NC_015703.1 PFAM: Protein of unknown function (DUF1343); COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR014036; KEGG: phe:Phep_3861 regulatory protein DeoR; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal; SPTR: transcriptional Regulator, DeoR family; hypothetical protein 6122808 10873822 Runsl_5267 Runella slithyformis DSM 19594 hypothetical protein YP_004658698.1 6121585 D 761193 CDS YP_004658699.1 338214636 10873823 6122989..6123765 1 NC_015703.1 PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain; COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550:IPR000644:IPR005170; KEGG: sli:Slin_1467 hypothetical protein; PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated region; SPTR: uncharacterized protein; DeoR family transcriptional regulator 6123765 10873823 Runsl_5268 Runella slithyformis DSM 19594 DeoR family transcriptional regulator YP_004658699.1 6122989 D 761193 CDS YP_004658700.1 338214637 10873824 complement(6123809..6125050) 1 NC_015703.1 PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain; InterPro IPR000086; KEGG: sli:Slin_1466 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; hypothetical protein 6125050 10873824 Runsl_5269 Runella slithyformis DSM 19594 hypothetical protein YP_004658700.1 6123809 R 761193 CDS YP_004658701.1 338214638 10873825 6125203..6125892 1 NC_015703.1 PFAM: NUDIX domain; COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: dol:Dole_2925 N-6 DNA methylase; PFAM: DNA methylase, adenine-specific; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: N-6 DNA methylase; NUDIX hydrolase 6125892 10873825 Runsl_5270 Runella slithyformis DSM 19594 NUDIX hydrolase YP_004658701.1 6125203 D 761193 CDS YP_004658702.1 338214639 10873826 6126186..6128243 1 NC_015703.1 PFAM: N-6 DNA Methylase; HsdM N-terminal domain; COGs: COG4804 conserved hypothetical protein; InterPro IPR009362; KEGG: bhl:Bache_1818 hypothetical protein; PFAM: Protein of unknown function DUF1016; SPTR: uncharacterized protein; adenine-specific DNA methyltransferase 6128243 10873826 Runsl_5271 Runella slithyformis DSM 19594 adenine-specific DNA methyltransferase YP_004658702.1 6126186 D 761193 CDS YP_004658703.1 338214640 10873827 6128240..6129316 1 NC_015703.1 PFAM: Protein of unknown function (DUF1016); COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: syn:slr6097 type I site-specific deoxyribonuclease; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Restriction modification system DNA specificity domain; hypothetical protein 6129316 10873827 Runsl_5272 Runella slithyformis DSM 19594 hypothetical protein YP_004658703.1 6128240 D 761193 CDS YP_004658704.1 338214641 10873828 6129381..6130694 1 NC_015703.1 PFAM: Type I restriction modification DNA specificity domain; COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014001:IPR004473:IPR007409:IPR006935; KEGG: dol:Dole_2927 HsdR family type I site-specific deoxyribonuclease; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; SPTR: Type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; restriction modification system DNA specificity domain-containing protein 6130694 10873828 Runsl_5273 Runella slithyformis DSM 19594 restriction modification system DNA specificity domain-containing protein YP_004658704.1 6129381 D 761193 CDS YP_004658705.1 338214642 10873829 6130702..6133779 1 NC_015703.1 PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; COGs: COG1451 metal-dependent hydrolase; InterPro IPR002725; KEGG: dol:Dole_2928 hypothetical protein; PFAM: Protein of unknown function DUF45; SPTR: uncharacterized protein; HsdR family type I site-specific deoxyribonuclease 6133779 10873829 Runsl_5274 Runella slithyformis DSM 19594 HsdR family type I site-specific deoxyribonuclease YP_004658705.1 6130702 D 761193 CDS YP_004658706.1 338214643 10873830 6133779..6134435 1 NC_015703.1 PFAM: Protein of unknown function DUF45; KEGG: sli:Slin_6082 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6134435 10873830 Runsl_5275 Runella slithyformis DSM 19594 hypothetical protein YP_004658706.1 6133779 D 761193 CDS YP_004658707.1 338214644 10873831 6134656..6135405 1 NC_015703.1 COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: sli:Slin_6081 glycoside hydrolase 43; PFAM: Glycoside hydrolase, family 43; SPTR: Glycoside hydrolase 43; hypothetical protein 6135405 10873831 Runsl_5276 Runella slithyformis DSM 19594 hypothetical protein YP_004658707.1 6134656 D 761193 CDS YP_004658708.1 338214645 10873832 6135477..6136886 1 NC_015703.1 PFAM: Glycosyl hydrolases family 43; InterPro IPR000835; KEGG: sli:Slin_4547 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; glycoside hydrolase 6136886 10873832 Runsl_5277 Runella slithyformis DSM 19594 glycoside hydrolase YP_004658708.1 6135477 D 761193 CDS YP_004658709.1 338214646 10873833 complement(6137025..6137681) 1 NC_015703.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: sli:Slin_4546 ABC transporter; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; regulatory protein MarR 6137681 10873833 Runsl_5278 Runella slithyformis DSM 19594 regulatory protein MarR YP_004658709.1 6137025 R 761193 CDS YP_004658710.1 338214647 10873834 6137812..6138498 1 NC_015703.1 PFAM: ABC transporter; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR000089; KEGG: sli:Slin_4545 secretion protein HlyD; PFAM: Biotin/lipoyl attachment; SPTR: Secretion protein HlyD family protein; phosphonate-transporting ATPase 6138498 10873834 Runsl_5279 Runella slithyformis DSM 19594 phosphonate-transporting ATPase YP_004658710.1 6137812 D 761193 CDS YP_004658711.1 338214648 10873835 6138522..6139466 1 NC_015703.1 PFAM: HlyD family secretion protein; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: chu:CHU_2646 ABC transporter permease; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: ABC transporter, permease component; biotin/lipoyl attachment domain-containing protein 6139466 10873835 Runsl_5280 Runella slithyformis DSM 19594 biotin/lipoyl attachment domain-containing protein YP_004658711.1 6138522 D 761193 CDS YP_004658712.1 338214649 10873836 6139486..6140604 1 NC_015703.1 PFAM: Predicted permease; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_4543 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; hypothetical protein 6140604 10873836 Runsl_5281 Runella slithyformis DSM 19594 hypothetical protein YP_004658712.1 6139486 D 761193 CDS YP_004658713.1 338214650 10873837 6140627..6141952 1 NC_015703.1 PFAM: Outer membrane efflux protein; Prodigal; This gene is disrupted by insertion of repetitive element; manually curated; outer membrane efflux protein 6141952 10873837 Runsl_5282 Runella slithyformis DSM 19594 outer membrane efflux protein YP_004658713.1 6140627 D 761193 CDS YP_004658714.1 338214651 10873840 complement(6144251..6145210) 1 NC_015703.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase; KEGG: amr:AM1_5006 IS4 family transposase; SPTR: ISPg2, transposase; transposase IS116/IS110/IS902 family protein 6145210 10873840 Runsl_5285 Runella slithyformis DSM 19594 transposase IS116/IS110/IS902 family protein YP_004658714.1 6144251 R 761193 CDS YP_004658715.1 338214652 10873841 6145486..6146130 1 NC_015703.1 hypothetical protein 6146130 10873841 Runsl_5286 Runella slithyformis DSM 19594 hypothetical protein YP_004658715.1 6145486 D 761193 CDS YP_004658716.1 338214653 10873842 6146120..6146326 1 NC_015703.1 COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR003593; KEGG: dfe:Dfer_1352 AAA ATPase; SMART: ATPase, AAA+ type, core; SPTR: AAA ATPase; hypothetical protein 6146326 10873842 Runsl_5287 Runella slithyformis DSM 19594 hypothetical protein YP_004658716.1 6146120 D 761193 CDS YP_004658717.1 338214654 10873843 6146451..6147626 1 NC_015703.1 COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: cao:Celal_2798 transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase; ATPase AAA 6147626 10873843 Runsl_5288 Runella slithyformis DSM 19594 ATPase AAA YP_004658717.1 6146451 D 761193 CDS YP_004658718.1 338214655 10873844 complement(6147934..6148917) 1 NC_015703.1 PFAM: Transposase; KEGG: dfe:Dfer_4027 hypothetical protein; SPTR: uncharacterized protein; transposase IS204/IS1001/IS1096/IS1165 family protein 6148917 10873844 Runsl_5289 Runella slithyformis DSM 19594 transposase IS204/IS1001/IS1096/IS1165 family protein YP_004658718.1 6147934 R 761193 CDS YP_004658719.1 338214656 10873845 complement(6148898..6149260) 1 NC_015703.1 hypothetical protein 6149260 10873845 Runsl_5290 Runella slithyformis DSM 19594 hypothetical protein YP_004658719.1 6148898 R 761193 CDS YP_004658720.1 338214657 10873847 complement(6149723..6152020) 1 NC_015703.1 KEGG: phe:Phep_0729 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6152020 10873847 Runsl_5291 Runella slithyformis DSM 19594 hypothetical protein YP_004658720.1 6149723 R 761193 CDS YP_004658721.1 338214658 10873848 complement(6152037..6154529) 1 NC_015703.1 COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR000192; KEGG: phe:Phep_1563 cysteine desulfurase IscS; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Cysteine desulfurase; SPTR: Cysteine desulfurase; hypothetical protein 6154529 10873848 Runsl_5292 Runella slithyformis DSM 19594 hypothetical protein YP_004658721.1 6152037 R 761193 CDS YP_004658722.1 338214659 10873849 6154643..6155794 1 NC_015703.1 PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase NifS; COGs: COG1247 Sortase and related acyltransferase; InterPro IPR000182; KEGG: dfe:Dfer_2457 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; cysteine desulfurase 6155794 10873849 Runsl_5293 Runella slithyformis DSM 19594 cysteine desulfurase YP_004658722.1 6154643 D 761193 CDS YP_004658723.1 338214660 10873850 complement(6155843..6156334) 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG3871 Uncharacterized stress protein (general stress protein 26); InterPro IPR011576; KEGG: chu:CHU_0468 general stress protein; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; SPTR: General stress protein; N-acetyltransferase GCN5 6156334 10873850 Runsl_5294 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004658723.1 6155843 R 761193 CDS YP_004658724.1 338214661 10873851 6156540..6157040 1 NC_015703.1 PFAM: Pyridoxamine 5'-phosphate oxidase; COGs: COG1410 Methionine synthase I cobalamin-binding domain; InterProIPR011822:IPR003726:IPR000489:IPR003759:IPR 006158:IPR004223; KEGG: dfe:Dfer_2804 methionine synthase; PFAM: Homocysteine S-methyltransferase; Dihydropteroate synthase, DHPS; Methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; Vitamin B12 dependent methionine synthase, activation region; PRIAM: Methionine synthase; SPTR: Methionine synthase; TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 6157040 10873851 Runsl_5295 Runella slithyformis DSM 19594 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_004658724.1 6156540 D 761193 CDS YP_004658725.1 338214662 10873852 complement(6157104..6161006) 1 NC_015703.1 PFAM: Pterin binding enzyme; Vitamin B12 dependent methionine synthase, activation domain; B12 binding domain; Homocysteine S-methyltransferase; TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; KEGG: sli:Slin_0752 hypothetical protein; SPTR: uncharacterized protein; methionine synthase 6161006 10873852 Runsl_5296 Runella slithyformis DSM 19594 methionine synthase YP_004658725.1 6157104 R 761193 CDS YP_004658726.1 338214663 10873853 complement(6161377..6162012) 1 NC_015703.1 KEGG: mtt:Ftrac_0101 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6162012 10873853 Runsl_5297 Runella slithyformis DSM 19594 hypothetical protein YP_004658726.1 6161377 R 761193 CDS YP_004658727.1 338214664 10873854 complement(6162051..6162527) 1 NC_015703.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR008816:IPR006665; KEGG: rmr:Rmar_0728 OmpA/MotB domain-containing protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Rickettsia 17kDa surface antigen; SPTR: OmpA/MotB domain protein; hypothetical protein 6162527 10873854 Runsl_5298 Runella slithyformis DSM 19594 hypothetical protein YP_004658727.1 6162051 R 761193 CDS YP_004658728.1 338214665 10873855 complement(6162590..6163345) 1 NC_015703.1 PFAM: OmpA family; COGs: COG1522 Transcriptional regulators; InterPro IPR019888:IPR019887; KEGG: dfe:Dfer_2805 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type; SPTR: Transcriptional regulator, AsnC family; OmpA/MotB domain-containing protein 6163345 10873855 Runsl_5299 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004658728.1 6162590 R 761193 CDS YP_004658729.1 338214666 10873856 6163647..6164108 1 NC_015703.1 PFAM: Sugar-specific transcriptional regulator TrmB; AsnC family; AsnC family transcriptional regulator 6164108 10873856 Runsl_5300 Runella slithyformis DSM 19594 AsnC family transcriptional regulator YP_004658729.1 6163647 D 761193 CDS YP_004658730.1 338214667 10873857 6164469..6164741 1 NC_015703.1 COGs: COG2509 Uncharacterized FAD-dependent dehydrogenase; InterPro IPR013027; KEGG: sli:Slin_1023 FAD dependent oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: FAD dependent oxidoreductase; hypothetical protein 6164741 10873857 Runsl_5301 Runella slithyformis DSM 19594 hypothetical protein YP_004658730.1 6164469 D 761193 CDS YP_004658731.1 338214668 10873858 6164848..6166443 1 NC_015703.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; InterPro IPR000086; KEGG: sli:Slin_1022 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 6166443 10873858 Runsl_5302 Runella slithyformis DSM 19594 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_004658731.1 6164848 D 761193 CDS YP_004658732.1 338214669 10873859 6166590..6167210 1 NC_015703.1 PFAM: NUDIX domain; KEGG: dfe:Dfer_4967 hypothetical protein; SPTR: uncharacterized protein; NUDIX hydrolase 6167210 10873859 Runsl_5303 Runella slithyformis DSM 19594 NUDIX hydrolase YP_004658732.1 6166590 D 761193 CDS YP_004658733.1 338214670 10873860 6167358..6170312 1 NC_015703.1 PFAM: Protein of unknown function (DUF2723); COGs: COG2363 Uncharacterized small membrane protein; InterPro IPR006696; KEGG: dfe:Dfer_2013 protein of unknown function DUF423; PFAM: Protein of unknown function DUF423; SPTR: uncharacterized protein; hypothetical protein 6170312 10873860 Runsl_5304 Runella slithyformis DSM 19594 hypothetical protein YP_004658733.1 6167358 D 761193 CDS YP_004658734.1 338214671 10873861 complement(6170415..6170798) 1 NC_015703.1 PFAM: Protein of unknown function (DUF423); COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: dfe:Dfer_2012 ADP-heptose:LPS heptosyltransferase-like protein; PFAM: Glycosyl transferase, family 9; SPTR: ADP-heptose:LPS heptosyltransferase-like protein; hypothetical protein 6170798 10873861 Runsl_5305 Runella slithyformis DSM 19594 hypothetical protein YP_004658734.1 6170415 R 761193 CDS YP_004658735.1 338214672 10873862 6171065..6172114 1 NC_015703.1 PFAM: Glycosyltransferase 9 (heptosyltransferase); COGs: COG0305 Replicative DNA helicase; InterPro IPR007692:IPR007693:IPR007694; KEGG: sli:Slin_1916 replicative DNA helicase; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; SPTR: Replicative DNA helicase; TIGRFAM: DNA helicase, DnaB type; glycosyl transferase family protein 6172114 10873862 Runsl_5306 Runella slithyformis DSM 19594 glycosyl transferase family protein YP_004658735.1 6171065 D 761193 CDS YP_004658736.1 338214673 10873863 6172217..6173818 1 NC_015703.1 PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase; KEGG: sli:Slin_0008 hypothetical protein; SPTR: uncharacterized protein; replicative DNA helicase 6173818 10873863 Runsl_5307 Runella slithyformis DSM 19594 replicative DNA helicase YP_004658736.1 6172217 D 761193 CDS YP_004658737.1 338214674 10873864 complement(6173933..6174883) 1 NC_015703.1 PFAM: Protein of unknown function (DUF3108); COGs: COG4324 aminopeptidase; InterPro IPR014553; KEGG: sli:Slin_0009 aminopeptidase; PFAM: aminopeptidase; SPTR: Aminopeptidase; hypothetical protein 6174883 10873864 Runsl_5308 Runella slithyformis DSM 19594 hypothetical protein YP_004658737.1 6173933 R 761193 CDS YP_004658738.1 338214675 10873865 complement(6174891..6175922) 1 NC_015703.1 PFAM: Predicted aminopeptidase (DUF2265); COGs: COG2021 Homoserine acetyltransferase; InterPro IPR006296:IPR000073; KEGG: dfe:Dfer_2669 homoserine O-acetyltransferase; PFAM: Alpha/beta hydrolase fold-1; PRIAM: Homoserine O-acetyltransferase; SPTR: Homoserine O-acetyltransferase; TIGRFAM: Homoserine O-acetyltransferase; aminopeptidase 6175922 10873865 Runsl_5309 Runella slithyformis DSM 19594 aminopeptidase YP_004658738.1 6174891 R 761193 CDS YP_004658739.1 338214676 10873866 complement(6176038..6177072) 1 NC_015703.1 PFAM: alpha/beta hydrolase fold; TIGRFAM: homoserine O-acetyltransferase; InterPro IPR007922; KEGG: dfe:Dfer_2709 protein of unknown function DUF721; PFAM: Protein of unknown function DUF721; SPTR: uncharacterized protein; homoserine O-acetyltransferase 6177072 10873866 Runsl_5310 Runella slithyformis DSM 19594 homoserine O-acetyltransferase YP_004658739.1 6176038 R 761193 CDS YP_004658740.1 338214677 10873867 6177499..6177819 1 NC_015703.1 PFAM: Protein of unknown function (DUF721); COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR003593:IPR004176:IPR003959:IPR001943:IPR 013093:IPR019489; KEGG: dfe:Dfer_5019 ATPase AAA-2 domain protein; PFAM: ATPase associated with various cellular activities, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; UvrB/UvrC protein; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATPase AAA-2 domain protein; hypothetical protein 6177819 10873867 Runsl_5311 Runella slithyformis DSM 19594 hypothetical protein YP_004658740.1 6177499 D 761193 CDS YP_004658741.1 338214678 10873868 complement(6178152..6180677) 1 NC_015703.1 PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase associated with various cellular activities (AAA); UvrB/uvrC motif; InterPro IPR014985; KEGG: sli:Slin_1369 WbqC-like family protein; PFAM: WbqC-like protein family; SPTR: WbqC-like family protein; ATPase AAA 6180677 10873868 Runsl_5312 Runella slithyformis DSM 19594 ATPase AAA YP_004658741.1 6178152 R 761193 CDS YP_004658742.1 338214679 10873869 complement(6180763..6181389) 1 NC_015703.1 PFAM: WbqC-like protein family; COGs: COG1402 Uncharacterized protein amidase; InterPro IPR003785; KEGG: zpr:ZPR_4313 creatinine amidohydrolase; PFAM: Creatininase; SPTR: Creatinine amidohydrolase; WbqC-like family protein 6181389 10873869 Runsl_5313 Runella slithyformis DSM 19594 WbqC-like family protein YP_004658742.1 6180763 R 761193 CDS YP_004658743.1 338214680 10873870 complement(6181566..6182330) 1 NC_015703.1 PFAM: Creatinine amidohydrolase; COGs: COG1560 Lauroyl/myristoyl acyltransferase; InterPro IPR004960; KEGG: sli:Slin_1368 lipid A biosynthesis acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase; SPTR: Lipid A biosynthesis acyltransferase; creatininase 6182330 10873870 Runsl_5314 Runella slithyformis DSM 19594 creatininase YP_004658743.1 6181566 R 761193 CDS YP_004658744.1 338214681 10873871 6182620..6183477 1 NC_015703.1 PFAM: Bacterial lipid A biosynthesis acyltransferase; Prodigal; manually curated; lipid A biosynthesis acyltransferase 6183477 10873871 Runsl_5315 Runella slithyformis DSM 19594 lipid A biosynthesis acyltransferase YP_004658744.1 6182620 D 761193 CDS YP_004658745.1 338214682 10873873 6184086..6184616 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; N-acetyltransferase GCN5 6184616 10873873 Runsl_5317 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004658745.1 6184086 D 761193 CDS YP_004658746.1 338214683 10873874 complement(6184464..6184802) 1 NC_015703.1 InterPro IPR001387:IPR019759; KEGG: mtt:Ftrac_3516 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; Peptidase S24/S26A/S26B, conserved region; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix domain protein; hypothetical protein 6184802 10873874 Runsl_5318 Runella slithyformis DSM 19594 hypothetical protein YP_004658746.1 6184464 R 761193 CDS YP_004658747.1 338214684 10873875 complement(6184799..6185506) 1 NC_015703.1 PFAM: Helix-turn-helix; COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase); InterPro IPR019759; KEGG: syf:Synpcc7942_1549 SOS mutagenesis protein UmuD; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: DNA polymerase V; helix-turn-helix domain-containing protein 6185506 10873875 Runsl_5319 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004658747.1 6184799 R 761193 CDS YP_004658748.1 338214685 10873876 6185626..6186039 1 NC_015703.1 PFAM: Peptidase S24-like; COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; InterPro IPR001126; KEGG: chu:CHU_1492 DNA repair nucleotidyltransferase/DNA polymerase; PFAM: DNA-repair protein, UmuC-like; PRIAM: DNA-directed DNA polymerase; SPTR: Nucleotidyltransferase/DNA polymerase involved in DNA repair; peptidase S24/S26A/S26B, conserved region 6186039 10873876 Runsl_5320 Runella slithyformis DSM 19594 peptidase S24/S26A/S26B, conserved region YP_004658748.1 6185626 D 761193 CDS YP_004658749.1 338214686 10873877 6186041..6187357 1 NC_015703.1 PFAM: impB/mucB/samB family C-terminal; impB/mucB/samB family; DNA-directed DNA polymerase 6187357 10873877 Runsl_5321 Runella slithyformis DSM 19594 DNA-directed DNA polymerase YP_004658749.1 6186041 D 761193 CDS YP_004658750.1 338214687 10873878 6187401..6187691 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 6187691 10873878 Runsl_5322 Runella slithyformis DSM 19594 hypothetical protein YP_004658750.1 6187401 D 761193 CDS YP_004658751.1 338214688 10873880 complement(6188858..6189028) 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 6189028 10873880 Runsl_5324 Runella slithyformis DSM 19594 hypothetical protein YP_004658751.1 6188858 R 761193 CDS YP_004658752.1 338214689 10873882 6190664..6191863 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 6191863 10873882 Runsl_5326 Runella slithyformis DSM 19594 hypothetical protein YP_004658752.1 6190664 D 761193 CDS YP_004658753.1 338214690 10873884 complement(6192342..6192713) 1 NC_015703.1 PFAM: Response regulator receiver domain; COGs: COG0642 Signal transduction histidine kinase; InterProIPR001610:IPR000014:IPR003661:IPR003594:IPR 013655:IPR013656; KEGG: sli:Slin_0618 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold-4; PAS fold-3; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; response regulator receiver protein 6192713 10873884 Runsl_5328 Runella slithyformis DSM 19594 response regulator receiver protein YP_004658753.1 6192342 R 761193 CDS YP_004658754.1 338214691 10873885 complement(6192753..6194999) 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683; KEGG: sus:Acid_4818 oxidoreductase domain-containing protein; PFAM: Oxidoreductase, N-terminal; SPTR: uncharacterized protein; PAS/PAC sensor signal transduction histidine kinase 6194999 10873885 Runsl_5329 Runella slithyformis DSM 19594 PAS/PAC sensor signal transduction histidine kinase YP_004658754.1 6192753 R 761193 CDS YP_004658755.1 338214692 10873886 6195410..6196777 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: cao:Celal_2798 transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase; oxidoreductase domain-containing protein 6196777 10873886 Runsl_5330 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004658755.1 6195410 D 761193 CDS YP_004658756.1 338214693 10873887 complement(6196927..6197910) 1 NC_015703.1 PFAM: Transposase; KEGG: dfe:Dfer_4027 hypothetical protein; SPTR: uncharacterized protein; transposase IS204/IS1001/IS1096/IS1165 family protein 6197910 10873887 Runsl_5331 Runella slithyformis DSM 19594 transposase IS204/IS1001/IS1096/IS1165 family protein YP_004658756.1 6196927 R 761193 CDS YP_004658757.1 338214694 10873888 complement(6197891..6198253) 1 NC_015703.1 hypothetical protein 6198253 10873888 Runsl_5332 Runella slithyformis DSM 19594 hypothetical protein YP_004658757.1 6197891 R 761193 CDS YP_004658758.1 338214695 10873889 complement(6198283..6198717) 1 NC_015703.1 hypothetical protein 6198717 10873889 Runsl_5333 Runella slithyformis DSM 19594 hypothetical protein YP_004658758.1 6198283 R 761193 CDS YP_004658759.1 338214696 10873891 6199190..6200044 1 NC_015703.1 PFAM: Fumarylacetoacetate (FAA) hydrolase; KEGG: dfe:Dfer_5077 hypothetical protein; SPTR: uncharacterized protein; ureidoglycolate lyase 6200044 10873891 Runsl_5334 Runella slithyformis DSM 19594 ureidoglycolate lyase YP_004658759.1 6199190 D 761193 CDS YP_004658760.1 338214697 10873892 6200157..6202316 1 NC_015703.1 PFAM: Domain of unknown function (DUF1083); COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834; KEGG: cpi:Cpin_1727 haloacid dehalogenase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Haloacid dehalogenase domain protein hydrolase; hypothetical protein 6202316 10873892 Runsl_5335 Runella slithyformis DSM 19594 hypothetical protein YP_004658760.1 6200157 D 761193 CDS YP_004658761.1 338214698 10873893 6202338..6203168 1 NC_015703.1 PFAM: haloacid dehalogenase-like hydrolase; InterPro IPR012910; KEGG: dfe:Dfer_4830 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; haloacid dehalogenase 6203168 10873893 Runsl_5336 Runella slithyformis DSM 19594 haloacid dehalogenase YP_004658761.1 6202338 D 761193 CDS YP_004658762.1 338214699 10873894 6203251..6205572 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060; KEGG: sli:Slin_4241 AraC family transcriptional regulator; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; TonB-dependent receptor plug 6205572 10873894 Runsl_5337 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004658762.1 6203251 D 761193 CDS YP_004658763.1 338214700 10873895 6205625..6206488 1 NC_015703.1 COGs: COG2128 conserved hypothetical protein; InterPro IPR004675:IPR003779; KEGG: sli:Slin_6223 alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; SPTR: Alkylhydroperoxidase like protein, AhpD family; TIGRFAM: Alkylhydroperoxidase AhpD core; AraC family transcriptional regulator 6206488 10873895 Runsl_5338 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004658763.1 6205625 D 761193 CDS YP_004658764.1 338214701 10873896 6206585..6207130 1 NC_015703.1 PFAM: Carboxymuconolactone decarboxylase; TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase AhpD family core domain; InterPro IPR011576; KEGG: sli:Slin_6225 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; SPTR: Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein; alkylhydroperoxidase 6207130 10873896 Runsl_5339 Runella slithyformis DSM 19594 alkylhydroperoxidase YP_004658764.1 6206585 D 761193 CDS YP_004658765.1 338214702 10873897 6207189..6207875 1 NC_015703.1 PFAM: Pyridoxamine 5'-phosphate oxidase; COGs: COG3618 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: sli:Slin_0412 amidohydrolase 2; PFAM: Amidohydrolase 2; SPTR: Amidohydrolase 2; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 6207875 10873897 Runsl_5340 Runella slithyformis DSM 19594 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_004658765.1 6207189 D 761193 CDS YP_004658766.1 338214703 10873898 complement(6207883..6208722) 1 NC_015703.1 PFAM: Amidohydrolase; InterPro IPR006652; KEGG: dfe:Dfer_4451 kelch repeat-containing protein; PFAM: Kelch repeat type 1; SMART: Kelch repeat type 1; SPTR: Kelch repeat-containing protein; amidohydrolase 6208722 10873898 Runsl_5341 Runella slithyformis DSM 19594 amidohydrolase YP_004658766.1 6207883 R 761193 CDS YP_004658767.1 338214704 10873899 complement(6208853..6209836) 1 NC_015703.1 PFAM: Kelch motif; Kelch repeat type 1-containing protein 6209836 10873899 Runsl_5342 Runella slithyformis DSM 19594 Kelch repeat type 1-containing protein YP_004658767.1 6208853 R 761193 CDS YP_004658768.1 338214705 10873900 complement(6210099..6210203) 1 NC_015703.1 COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sli:Slin_2987 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; hypothetical protein 6210203 10873900 Runsl_5343 Runella slithyformis DSM 19594 hypothetical protein YP_004658768.1 6210099 R 761193 CDS YP_004658769.1 338214706 10873901 complement(6210268..6211815) 1 NC_015703.1 PFAM: Beta-lactamase; Domain of unknown function (DUF3471); beta-lactamase 6211815 10873901 Runsl_5344 Runella slithyformis DSM 19594 beta-lactamase YP_004658769.1 6210268 R 761193 CDS YP_004658770.1 338214707 10873902 complement(6211832..6212290) 1 NC_015703.1 KEGG: sli:Slin_4467 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6212290 10873902 Runsl_5345 Runella slithyformis DSM 19594 hypothetical protein YP_004658770.1 6211832 R 761193 CDS YP_004658771.1 338214708 10873903 complement(6212352..6212810) 1 NC_015703.1 KEGG: sli:Slin_3038 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6212810 10873903 Runsl_5346 Runella slithyformis DSM 19594 hypothetical protein YP_004658771.1 6212352 R 761193 CDS YP_004658772.1 338214709 10873904 6212995..6214569 1 NC_015703.1 COGs: COG0327 conserved hypothetical protein; KEGG: sli:Slin_2404 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6214569 10873904 Runsl_5347 Runella slithyformis DSM 19594 hypothetical protein YP_004658772.1 6212995 D 761193 CDS YP_004658773.1 338214710 10873905 6214802..6215467 1 NC_015703.1 PFAM: NIF3 (NGG1p interacting factor 3); InterPro IPR004360; KEGG: sli:Slin_0926 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: uncharacterized protein; hypothetical protein 6215467 10873905 Runsl_5348 Runella slithyformis DSM 19594 hypothetical protein YP_004658773.1 6214802 D 761193 CDS YP_004658774.1 338214711 10873906 complement(6215469..6215849) 1 NC_015703.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; COGs: COG1820 N-acetylglucosamine-6-phosphate deacetylase; InterPro IPR003764:IPR006680; KEGG: fjo:Fjoh_3974 N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase 1; PRIAM: N-acetylglucosamine-6-phosphate deacetylase; SPTR: Candidate N-acetylglucosamine-6-phosphate deacetylase; Carbohydrate esterase 9; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; Glyoxalase/bleomycin resistance protein/dioxygenase 6215849 10873906 Runsl_5349 Runella slithyformis DSM 19594 Glyoxalase/bleomycin resistance protein/dioxygenase YP_004658774.1 6215469 R 761193 CDS YP_004658775.1 338214712 10873907 complement(6215862..6216986) 1 NC_015703.1 PFAM: Amidohydrolase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: tra:Trad_2126 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase; N-acetylglucosamine-6-phosphate deacetylase 6216986 10873907 Runsl_5350 Runella slithyformis DSM 19594 N-acetylglucosamine-6-phosphate deacetylase YP_004658775.1 6215862 R 761193 CDS YP_004658776.1 338214713 10873908 6217054..6218184 1 NC_015703.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG0656 Aldo/keto reductase related to diketogulonate reductase; InterPro IPR001395; KEGG: sli:Slin_6248 2,5-didehydrogluconate reductase; PFAM: Aldo/keto reductase; PRIAM: Methylglyoxal reductase (NADPH-dependent); SPTR: 2,5-didehydrogluconate reductase; DegT/DnrJ/EryC1/StrS aminotransferase 6218184 10873908 Runsl_5351 Runella slithyformis DSM 19594 DegT/DnrJ/EryC1/StrS aminotransferase YP_004658776.1 6217054 D 761193 CDS YP_004658777.1 338214714 10873909 complement(6218257..6219069) 1 NC_015703.1 PFAM: Aldo/keto reductase; COGs: COG4784 Zn-dependent protease; InterPro IPR001915; KEGG: sli:Slin_4877 peptidase M48 Ste24p; PFAM: Peptidase M48, Ste24p; SPTR: Peptidase M48 Ste24p; manually curated; methylglyoxal reductase 6219069 10873909 Runsl_5352 Runella slithyformis DSM 19594 methylglyoxal reductase YP_004658777.1 6218257 R 761193 CDS YP_004658778.1 338214715 10873910 6219270..6220745 1 NC_015703.1 PFAM: Peptidase M48; COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: sli:Slin_2383 DNA protecting protein DprA; PFAM: DNA recombination-mediator protein A; SPTR: DNA protecting protein DprA; TIGRFAM: DNA recombination-mediator protein A; peptidase M48 Ste24p 6220745 10873910 Runsl_5353 Runella slithyformis DSM 19594 peptidase M48 Ste24p YP_004658778.1 6219270 D 761193 CDS YP_004658779.1 338214716 10873911 complement(6220832..6221920) 1 NC_015703.1 PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA; COGs: COG0069 Glutamate synthase domain 2; InterPro IPR002932; KEGG: dfe:Dfer_5008 ferredoxin-dependent glutamate synthase; PFAM: Glutamate synthase, central-C; PRIAM: Glutamate synthase (NADPH); SPTR: Ferredoxin-dependent glutamate synthase; DNA protecting protein DprA 6221920 10873911 Runsl_5354 Runella slithyformis DSM 19594 DNA protecting protein DprA YP_004658779.1 6220832 R 761193 CDS YP_004658780.1 338214717 10873912 complement(6221930..6223495) 1 NC_015703.1 PFAM: Conserved region in glutamate synthase; COGs: COG2367 Beta-lactamase class A; KEGG: fnu:FN1584 beta-lactamase; SPTR: Possible beta-lactamase class A; glutamate synthase 6223495 10873912 Runsl_5355 Runella slithyformis DSM 19594 glutamate synthase YP_004658780.1 6221930 R 761193 CDS YP_004658781.1 338214718 10873913 complement(6223510..6224364) 1 NC_015703.1 PFAM: D-alanyl-D-alanine carboxypeptidase; beta-lactamase 6224364 10873913 Runsl_5356 Runella slithyformis DSM 19594 beta-lactamase YP_004658781.1 6223510 R 761193 CDS YP_004658782.1 338214719 10873914 complement(6224401..6224847) 1 NC_015703.1 Prodigal; manually curated; hypothetical protein 6224847 10873914 Runsl_5357 Runella slithyformis DSM 19594 hypothetical protein YP_004658782.1 6224401 R 761193 CDS YP_004658783.1 338214720 10873916 complement(6225726..6226820) 1 NC_015703.1 PFAM: Endonuclease/Exonuclease/phosphatase; KEGG: sli:Slin_3038 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6226820 10873916 Runsl_5359 Runella slithyformis DSM 19594 hypothetical protein YP_004658783.1 6225726 R 761193 CDS YP_004658784.1 338214721 10873917 6226871..6228373 1 NC_015703.1 COGs: COG1866 Phosphoenolpyruvate carboxykinase (ATP); HAMAP: Phosphoenolpyruvate carboxykinase [ATP]; InterPro IPR001272; KEGG: rmr:Rmar_1197 phosphoenolpyruvate carboxykinase (ATP); PFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising; SPTR: Phosphoenolpyruvate carboxykinase [ATP]; TIGRFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising; hypothetical protein 6228373 10873917 Runsl_5360 Runella slithyformis DSM 19594 hypothetical protein YP_004658784.1 6226871 D 761193 CDS YP_004658785.1 338214722 10873918 6228653..6230242 1 NC_015703.1 PFAM: Phosphoenolpyruvate carboxykinase; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP); COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: cpi:Cpin_2227 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; phosphoenolpyruvate carboxykinase 6230242 10873918 Runsl_5361 Runella slithyformis DSM 19594 phosphoenolpyruvate carboxykinase YP_004658785.1 6228653 D 761193 CDS YP_004658786.1 338214723 10873919 6230504..6231835 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; COGs: COG1585 Membrane protein implicated in regulation of membrane protease activity; InterPro IPR002810; KEGG: dfe:Dfer_3005 protein of unknown function DUF107; PFAM: Nodulation efficiency, NfeD; SPTR: uncharacterized protein; oxidoreductase domain-containing protein 6231835 10873919 Runsl_5362 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004658786.1 6230504 D 761193 CDS YP_004658787.1 338214724 10873920 complement(6231946..6232395) 1 NC_015703.1 PFAM: NfeD-like; COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: dfe:Dfer_3004 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: Band 7 protein; hypothetical protein 6232395 10873920 Runsl_5363 Runella slithyformis DSM 19594 hypothetical protein YP_004658787.1 6231946 R 761193 CDS YP_004658788.1 338214725 10873921 complement(6232430..6233347) 1 NC_015703.1 PFAM: SPFH domain / Band 7 family; COGs: COG1058 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; InterPro IPR008135:IPR008136:IPR001453; KEGG: sli:Slin_1357 competence/damage-inducible protein CinA; PFAM: CinA, C-terminal; Molybdopterin binding; SPTR: CinA-like protein; TIGRFAM: Competence-induced protein CinA; CinA, C-terminal; hypothetical protein 6233347 10873921 Runsl_5364 Runella slithyformis DSM 19594 hypothetical protein YP_004658788.1 6232430 R 761193 CDS YP_004658789.1 338214726 10873922 6233743..6234990 1 NC_015703.1 PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain; COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR000089:IPR004167:IPR001078; KEGG: sli:Slin_1356 catalytic domain of components of various dehydrogenase complexes; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; PRIAM: Dihydrolipoyllysine-residue succinyltransferase; SPTR: Catalytic domain of components of various dehydrogenase complexes; competence/damage-inducible protein CinA 6234990 10873922 Runsl_5365 Runella slithyformis DSM 19594 competence/damage-inducible protein CinA YP_004658789.1 6233743 D 761193 CDS YP_004658790.1 338214727 10873923 6235047..6236390 1 NC_015703.1 PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: mea:Mex_1p3295 arylesterase (alpha/beta hydrolase fold), haloperoxidase; PFAM: Alpha/beta hydrolase fold-1; PRIAM: Arylesterase; SPTR: Arylesterase (Alpha/beta hydrolase fold), haloperoxidase; dihydrolipoyllysine-residue succinyltransferase 6236390 10873923 Runsl_5366 Runella slithyformis DSM 19594 dihydrolipoyllysine-residue succinyltransferase YP_004658790.1 6235047 D 761193 CDS YP_004658791.1 338214728 10873924 6236559..6237395 1 NC_015703.1 PFAM: alpha/beta hydrolase fold; COGs: COG0456 Acetyltransferase; InterPro IPR000182; KEGG: mac:MA3954 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase; arylesterase 6237395 10873924 Runsl_5367 Runella slithyformis DSM 19594 arylesterase YP_004658791.1 6236559 D 761193 CDS YP_004658792.1 338214729 10873925 complement(6237402..6237914) 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; KEGG: sli:Slin_5715 hypothetical protein; SPTR: uncharacterized protein; N-acetyltransferase GCN5 6237914 10873925 Runsl_5368 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004658792.1 6237402 R 761193 CDS YP_004658793.1 338214730 10873926 complement(6238122..6238748) 1 NC_015703.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: lby:Lbys_0414 transcriptional regulator, crp/fnr family; PFAM: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; hypothetical protein 6238748 10873926 Runsl_5369 Runella slithyformis DSM 19594 hypothetical protein YP_004658793.1 6238122 R 761193 CDS YP_004658794.1 338214731 10873927 complement(6238837..6239415) 1 NC_015703.1 PFAM: Cyclic nucleotide-binding domain; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: lby:Lbys_0110 short-chain dehydrogenase/reductase sdr; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; Crp/Fnr family transcriptional regulator 6239415 10873927 Runsl_5370 Runella slithyformis DSM 19594 Crp/Fnr family transcriptional regulator YP_004658794.1 6238837 R 761193 CDS YP_004658795.1 338214732 10873928 complement(6239431..6240222) 1 NC_015703.1 PFAM: short chain dehydrogenase; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: lby:Lbys_0111 transcriptional regulator, crp/fnr family; PFAM: Cyclic nucleotide-binding; SPTR: transcriptional regulator, Crp/Fnr family; short-chain dehydrogenase/reductase SDR 6240222 10873928 Runsl_5371 Runella slithyformis DSM 19594 short-chain dehydrogenase/reductase SDR YP_004658795.1 6239431 R 761193 CDS YP_004658796.1 338214733 10873929 complement(6240291..6240866) 1 NC_015703.1 PFAM: Cyclic nucleotide-binding domain; KEGG: lbf:LBF_2484 hypothetical protein; SPTR: uncharacterized protein; Crp/Fnr family transcriptional regulator 6240866 10873929 Runsl_5372 Runella slithyformis DSM 19594 Crp/Fnr family transcriptional regulator YP_004658796.1 6240291 R 761193 CDS YP_004658797.1 338214734 10873930 complement(6241026..6242219) 1 NC_015703.1 COGs: COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain; KEGG: dfe:Dfer_5786 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6242219 10873930 Runsl_5373 Runella slithyformis DSM 19594 hypothetical protein YP_004658797.1 6241026 R 761193 CDS YP_004658798.1 338214735 10873931 complement(6242351..6243454) 1 NC_015703.1 InterPro IPR013216; KEGG: dfe:Dfer_0228 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; hypothetical protein 6243454 10873931 Runsl_5374 Runella slithyformis DSM 19594 hypothetical protein YP_004658798.1 6242351 R 761193 CDS YP_004658799.1 338214736 10873932 6243608..6244342 1 NC_015703.1 PFAM: Methyltransferase domain; InterPro IPR009474; KEGG: dfe:Dfer_5785 protein of unknown function DUF1094; PFAM: Uncharacterised protein family UPF0403; SPTR: uncharacterized protein; type 11 methyltransferase 6244342 10873932 Runsl_5375 Runella slithyformis DSM 19594 type 11 methyltransferase YP_004658799.1 6243608 D 761193 CDS YP_004658800.1 338214737 10873933 complement(6244436..6244864) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1094); COGs: COG2151 metal-sulfur cluster biosynthetic protein; InterPro IPR014291:IPR002744; KEGG: dfe:Dfer_5784 FeS assembly SUF system protein; PFAM: Protein of unknown function DUF59; SPTR: FeS assembly SUF system protein; TIGRFAM: SUF system FeS cluster assembly associated; hypothetical protein 6244864 10873933 Runsl_5376 Runella slithyformis DSM 19594 hypothetical protein YP_004658800.1 6244436 R 761193 CDS YP_004658801.1 338214738 10873934 complement(6244926..6245237) 1 NC_015703.1 PFAM: Domain of unknown function DUF59; TIGRFAM: FeS assembly SUF system protein; COGs: COG2166 SufE protein probably involved in Fe-S center assembly; InterPro IPR003808; KEGG: sli:Slin_0163 Fe-S metabolism associated SufE; PFAM: Fe-S metabolism associated SufE; SPTR: Fe-S metabolism associated SufE; FeS assembly SUF system protein 6245237 10873934 Runsl_5377 Runella slithyformis DSM 19594 FeS assembly SUF system protein YP_004658801.1 6244926 R 761193 CDS YP_004658802.1 338214739 10873935 complement(6245281..6245709) 1 NC_015703.1 PFAM: Fe-S metabolism associated domain; InterPro IPR007712; KEGG: sli:Slin_0164 plasmid stabilization system; PFAM: Plasmid stabilisation system; SPTR: Plasmid stabilization system; Fe-S metabolism associated SufE 6245709 10873935 Runsl_5378 Runella slithyformis DSM 19594 Fe-S metabolism associated SufE YP_004658802.1 6245281 R 761193 CDS YP_004658803.1 338214740 10873936 complement(6245706..6245999) 1 NC_015703.1 PFAM: Plasmid stabilisation system protein; KEGG: sli:Slin_0165 hypothetical protein; SPTR: uncharacterized protein; plasmid stabilization system 6245999 10873936 Runsl_5379 Runella slithyformis DSM 19594 plasmid stabilization system YP_004658803.1 6245706 R 761193 CDS YP_004658804.1 338214741 10873937 complement(6245984..6246181) 1 NC_015703.1 COGs: COG0520 Selenocysteine lyase; InterPro IPR010970:IPR000192; KEGG: dfe:Dfer_5780 cysteine desulfurase, SufS subfamily; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Selenocysteine lyase; SPTR: Cysteine desulfurase, SufS subfamily; TIGRFAM: Cysteine desulfurase, SufS; hypothetical protein 6246181 10873937 Runsl_5380 Runella slithyformis DSM 19594 hypothetical protein YP_004658804.1 6245984 R 761193 CDS YP_004658805.1 338214742 10873938 complement(6246193..6247410) 1 NC_015703.1 PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily; KEGG: dfe:Dfer_3935 hypothetical protein; SPTR: uncharacterized protein; cysteine desulfurase 6247410 10873938 Runsl_5381 Runella slithyformis DSM 19594 cysteine desulfurase YP_004658805.1 6246193 R 761193 CDS YP_004658806.1 338214743 10873939 6247627..6247941 1 NC_015703.1 COGs: COG0359 Ribosomal protein L9; HAMAP: Ribosomal protein L9, bacteria/chloroplast; InterPro IPR020594:IPR020070:IPR020069; KEGG: dfe:Dfer_2007 ribosomal protein L9; PFAM: Ribosomal protein L9, N-terminal; Ribosomal protein L9, C-terminal; SPTR: 50S ribosomal protein L9; TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; hypothetical protein 6247941 10873939 Runsl_5382 Runella slithyformis DSM 19594 hypothetical protein YP_004658806.1 6247627 D 761193 CDS YP_004658807.1 338214744 10873940 complement(6248009..6248452) 1 NC_015703.1 PFAM: Ribosomal protein L9, N-terminal domain; Ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9; COGs: COG0238 Ribosomal protein S18; HAMAP: 30S ribosomal protein S18; InterPro IPR001648; KEGG: dfe:Dfer_2008 30S ribosomal protein S18; PFAM: Ribosomal protein S18; SPTR: 30S ribosomal protein S18; TIGRFAM: Ribosomal protein S18; 50S ribosomal protein L9 6248452 10873940 Runsl_5383 Runella slithyformis DSM 19594 50S ribosomal protein L9 YP_004658807.1 6248009 R 761193 CDS YP_004658808.1 338214745 10873941 complement(6248475..6248726) 1 NC_015703.1 PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18; COGs: COG0360 Ribosomal protein S6; HAMAP: Ribosomal protein S6, bacterial-like; InterPro IPR020814:IPR000529; KEGG: dfe:Dfer_2009 30S ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like; SPTR: 30S ribosomal protein S6; TIGRFAM: Ribosomal protein S6; 30S ribosomal protein S18 6248726 10873941 Runsl_5384 Runella slithyformis DSM 19594 30S ribosomal protein S18 YP_004658808.1 6248475 R 761193 CDS YP_004658809.1 338214746 10873942 complement(6248726..6249100) 1 NC_015703.1 PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6; COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR003953; KEGG: phe:Phep_2084 FAD dependent oxidoreductase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; SPTR: FAD dependent oxidoreductase; 30S ribosomal protein S6 6249100 10873942 Runsl_5385 Runella slithyformis DSM 19594 30S ribosomal protein S6 YP_004658809.1 6248726 R 761193 CDS YP_004658810.1 338214747 10873943 complement(6249227..6250672) 1 NC_015703.1 PFAM: FAD binding domain; COGs: COG2873 O-acetylhomoserine sulfhydrylase; InterPro IPR006235:IPR000277; KEGG: dfe:Dfer_1094 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; PRIAM: Cysteine synthase; SPTR: O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 6250672 10873943 Runsl_5386 Runella slithyformis DSM 19594 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_004658810.1 6249227 R 761193 CDS YP_004658811.1 338214748 10873944 6251773..6253059 1 NC_015703.1 PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: OAH/OAS sulfhydrylase; COGs: COG3358 conserved hypothetical protein; InterPro IPR012467; KEGG: sli:Slin_4806 hypothetical protein; PFAM: Protein of unknown function DUF1684; SPTR: uncharacterized protein; O-acetylhomoserine/O-acetylserine sulfhydrylase 6253059 10873944 Runsl_5387 Runella slithyformis DSM 19594 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_004658811.1 6251773 D 761193 CDS YP_004658812.1 338214749 10873945 complement(6253167..6254054) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1684); KEGG: dfe:Dfer_2835 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; hypothetical protein 6254054 10873945 Runsl_5388 Runella slithyformis DSM 19594 hypothetical protein YP_004658812.1 6253167 R 761193 CDS YP_004658813.1 338214750 10873946 complement(6254254..6254853) 1 NC_015703.1 PFAM: AhpC/TSA family; COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: dfe:Dfer_4495 fatty acid hydroxylase; PFAM: Fatty acid hydroxylase; SPTR: Fatty acid hydroxylase; alkyl hydroperoxide reductase 6254853 10873946 Runsl_5389 Runella slithyformis DSM 19594 alkyl hydroperoxide reductase YP_004658813.1 6254254 R 761193 CDS YP_004658814.1 338214751 10873947 complement(6254905..6256110) 1 NC_015703.1 PFAM: Fatty acid hydroxylase superfamily; Prodigal; manually curated; fatty acid hydroxylase 6256110 10873947 Runsl_5390 Runella slithyformis DSM 19594 fatty acid hydroxylase YP_004658814.1 6254905 R 761193 CDS YP_004658815.1 338214752 10873949 complement(6256564..6258621) 1 NC_015703.1 PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein; KEGG: sli:Slin_1918 hypothetical protein; SPTR: uncharacterized protein; ComEC/Rec2-like protein 6258621 10873949 Runsl_5392 Runella slithyformis DSM 19594 ComEC/Rec2-like protein YP_004658815.1 6256564 R 761193 CDS YP_004658816.1 338214753 10873950 complement(6258618..6259949) 1 NC_015703.1 PFAM: Pregnancy-associated plasma protein-A; COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR003714; KEGG: dfe:Dfer_1072 PhoH family protein; PFAM: PhoH-like protein; SPTR: PhoH family protein; hypothetical protein 6259949 10873950 Runsl_5393 Runella slithyformis DSM 19594 hypothetical protein YP_004658816.1 6258618 R 761193 CDS YP_004658817.1 338214754 10873951 complement(6259957..6260913) 1 NC_015703.1 PFAM: PhoH-like protein; KEGG: ami:Amir_1954 LPXTG-motif cell wall anchor domain protein; SPTR: Predicted protein; PhoH family protein 6260913 10873951 Runsl_5394 Runella slithyformis DSM 19594 PhoH family protein YP_004658817.1 6259957 R 761193 CDS YP_004658818.1 338214755 10873952 6261437..6263119 1 NC_015703.1 KEGG: sli:Slin_5055 phosphoesterase PA-phosphatase related protein; SPTR: Phosphoesterase PA-phosphatase related protein; hypothetical protein 6263119 10873952 Runsl_5395 Runella slithyformis DSM 19594 hypothetical protein YP_004658818.1 6261437 D 761193 CDS YP_004658819.1 338214756 10873953 6263475..6264833 1 NC_015703.1 PFAM: PAP2 superfamily; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439; KEGG: sli:Slin_1762 ABC transporter; PFAM: ABC transporter-like; SPTR: ABC transporter related protein; phosphoesterase PA-phosphatase-like protein 6264833 10873953 Runsl_5396 Runella slithyformis DSM 19594 phosphoesterase PA-phosphatase-like protein YP_004658819.1 6263475 D 761193 CDS YP_004658820.1 338214757 10873954 6264868..6265509 1 NC_015703.1 PFAM: ABC transporter; KEGG: sli:Slin_1761 hypothetical protein; SPTR: uncharacterized protein; manually curated; ABC transporter 6265509 10873954 Runsl_5397 Runella slithyformis DSM 19594 ABC transporter YP_004658820.1 6264868 D 761193 CDS YP_004658821.1 338214758 10873955 6265654..6266787 1 NC_015703.1 KEGG: dfe:Dfer_2414 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6266787 10873955 Runsl_5398 Runella slithyformis DSM 19594 hypothetical protein YP_004658821.1 6265654 D 761193 CDS YP_004658822.1 338214759 10873956 6266878..6267069 1 NC_015703.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR000683:IPR004104; KEGG: dfe:Dfer_1598 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; PRIAM: Glucose-fructose oxidoreductase; SPTR: Oxidoreductase domain protein; hypothetical protein 6267069 10873956 Runsl_5399 Runella slithyformis DSM 19594 hypothetical protein YP_004658822.1 6266878 D 761193 CDS YP_004658823.1 338214760 10873957 complement(6267245..6268330) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR003593:IPR012763:IPR003959; KEGG: dfe:Dfer_4930 DNA polymerase III, subunits gamma and tau; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunit gamma/ tau; glucose-fructose oxidoreductase 6268330 10873957 Runsl_5400 Runella slithyformis DSM 19594 glucose-fructose oxidoreductase YP_004658823.1 6267245 R 761193 CDS YP_004658824.1 338214761 10873958 complement(6268400..6270205) 1 NC_015703.1 PFAM: ATPase associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, subunit gamma and tau; COGs: COG2258 conserved hypothetical protein; InterPro IPR005302; KEGG: sli:Slin_0265 MOSC domain containing protein; PFAM: Molybdenum cofactor sulfurase, C-terminal; SPTR: uncharacterized protein; DNA polymerase III subunits gamma and tau 6270205 10873958 Runsl_5401 Runella slithyformis DSM 19594 DNA polymerase III subunits gamma and tau YP_004658824.1 6268400 R 761193 CDS YP_004658825.1 338214762 10873959 complement(6270285..6270800) 1 NC_015703.1 PFAM: MOSC domain; COGs: COG3124 conserved hypothetical protein; InterPro IPR007431; KEGG: dfe:Dfer_1066 protein of unknown function DUF479; PFAM: Acyl carrier protein phosphodiesterase; SPTR: uncharacterized protein; MOSC domain-containing protein 6270800 10873959 Runsl_5402 Runella slithyformis DSM 19594 MOSC domain-containing protein YP_004658825.1 6270285 R 761193 CDS YP_004658826.1 338214763 10873960 complement(6270833..6271429) 1 NC_015703.1 PFAM: Protein of unknown function, DUF479; COGs: COG2131 Deoxycytidylate deaminase; InterPro IPR002125; KEGG: dfe:Dfer_1068 CMP/dCMP deaminase zinc-binding; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: CMP/dCMP deaminase zinc-binding; ACP phosphodieterase 6271429 10873960 Runsl_5403 Runella slithyformis DSM 19594 ACP phosphodieterase YP_004658826.1 6270833 R 761193 CDS YP_004658827.1 338214764 10873961 complement(6271480..6271965) 1 NC_015703.1 PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; KEGG: sli:Slin_4939 hypothetical protein; SPTR: uncharacterized protein; CMP/dCMP deaminase zinc-binding protein 6271965 10873961 Runsl_5404 Runella slithyformis DSM 19594 CMP/dCMP deaminase zinc-binding protein YP_004658827.1 6271480 R 761193 CDS YP_004658828.1 338214765 10873962 6272048..6273187 1 NC_015703.1 COGs: COG0684 Demethylmenaquinone methyltransferase; KEGG: sli:Slin_6192 demethylmenaquinone methyltransferase-like protein; SPTR: Demethylmenaquinone methyltransferase-like protein; hypothetical protein 6273187 10873962 Runsl_5405 Runella slithyformis DSM 19594 hypothetical protein YP_004658828.1 6272048 D 761193 CDS YP_004658829.1 338214766 10873963 6273274..6274218 1 NC_015703.1 PFAM: Demethylmenaquinone methyltransferase; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR006311:IPR013341:IPR013342; KEGG: sli:Slin_6193 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; PRIAM: Galactonate dehydratase; SPTR: Mandelate racemase/muconate lactonizing protein; demethylmenaquinone methyltransferase-like protein 6274218 10873963 Runsl_5406 Runella slithyformis DSM 19594 demethylmenaquinone methyltransferase-like protein YP_004658829.1 6273274 D 761193 CDS YP_004658830.1 338214767 10873964 6274275..6275549 1 NC_015703.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; KEGG: lby:Lbys_3432 hypothetical protein; SPTR: uncharacterized protein; galactonate dehydratase 6275549 10873964 Runsl_5407 Runella slithyformis DSM 19594 galactonate dehydratase YP_004658830.1 6274275 D 761193 CDS YP_004658831.1 338214768 10873965 complement(6275612..6276148) 1 NC_015703.1 KEGG: lby:Lbys_3432 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6276148 10873965 Runsl_5408 Runella slithyformis DSM 19594 hypothetical protein YP_004658831.1 6275612 R 761193 CDS YP_004658832.1 338214769 10873966 complement(6276179..6276700) 1 NC_015703.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: sli:Slin_1730 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; hypothetical protein 6276700 10873966 Runsl_5409 Runella slithyformis DSM 19594 hypothetical protein YP_004658832.1 6276179 R 761193 CDS YP_004658833.1 338214770 10873967 complement(6276745..6277638) 1 NC_015703.1 PFAM: OmpA family; OmpA/MotB domain-containing protein 6277638 10873967 Runsl_5410 Runella slithyformis DSM 19594 OmpA/MotB domain-containing protein YP_004658833.1 6276745 R 761193 CDS YP_004658834.1 338214771 10873968 6278082..6278411 1 NC_015703.1 COGs: COG0685 5 10-methylenetetrahydrofolate reductase; InterPro IPR004620:IPR003171; KEGG: sli:Slin_1800 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase; PRIAM: Methylenetetrahydrofolate reductase (NAD(P)H); SPTR: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; hypothetical protein 6278411 10873968 Runsl_5411 Runella slithyformis DSM 19594 hypothetical protein YP_004658834.1 6278082 D 761193 CDS YP_004658835.1 338214772 10873969 complement(6278480..6279439) 1 NC_015703.1 PFAM: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase, prokaryotic form; COGs: COG0335 Ribosomal protein L19; HAMAP: Ribosomal protein L19; InterPro IPR001857; KEGG: sli:Slin_1454 ribosomal protein L19; PFAM: Ribosomal protein L19; SPTR: 50S ribosomal protein L19; TIGRFAM: Ribosomal protein L19; 5,10-methylenetetrahydrofolate reductase 6279439 10873969 Runsl_5412 Runella slithyformis DSM 19594 5,10-methylenetetrahydrofolate reductase YP_004658835.1 6278480 R 761193 CDS YP_004658836.1 338214773 10873970 6279633..6280040 1 NC_015703.1 PFAM: Ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type; COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: dfe:Dfer_5091 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; 50S ribosomal protein L19 6280040 10873970 Runsl_5413 Runella slithyformis DSM 19594 50S ribosomal protein L19 YP_004658836.1 6279633 D 761193 CDS YP_004658837.1 338214774 10873971 6280119..6280907 1 NC_015703.1 PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; KEGG: dfe:Dfer_3820 hypothetical protein; SPTR: uncharacterized protein; diaminopimelate epimerase 6280907 10873971 Runsl_5414 Runella slithyformis DSM 19594 diaminopimelate epimerase YP_004658837.1 6280119 D 761193 CDS YP_004658838.1 338214775 10873972 complement(6280924..6282183) 1 NC_015703.1 KEGG: dfe:Dfer_3821 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6282183 10873972 Runsl_5415 Runella slithyformis DSM 19594 hypothetical protein YP_004658838.1 6280924 R 761193 CDS YP_004658839.1 338214776 10873973 complement(6282253..6283506) 1 NC_015703.1 InterPro IPR013216; KEGG: sml:Smlt0631 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; hypothetical protein 6283506 10873973 Runsl_5416 Runella slithyformis DSM 19594 hypothetical protein YP_004658839.1 6282253 R 761193 CDS YP_004658840.1 338214777 10873974 complement(6283514..6284158) 1 NC_015703.1 PFAM: Methyltransferase domain; COGs: COG0703 Shikimate kinase; HAMAP: Shikimate kinase; InterPro IPR000623; KEGG: sli:Slin_2313 shikimate kinase; PFAM: Shikimate kinase; PRIAM: Shikimate kinase; SPTR: Shikimate kinase; type 11 methyltransferase 6284158 10873974 Runsl_5417 Runella slithyformis DSM 19594 type 11 methyltransferase YP_004658840.1 6283514 R 761193 CDS YP_004658841.1 338214778 10873975 complement(6284441..6284956) 1 NC_015703.1 PFAM: Shikimate kinase; KEGG: sli:Slin_2314 DoxX family protein; SPTR: DoxX family protein; shikimate kinase 6284956 10873975 Runsl_5418 Runella slithyformis DSM 19594 shikimate kinase YP_004658841.1 6284441 R 761193 CDS YP_004658842.1 338214779 10873976 complement(6285024..6286112) 1 NC_015703.1 KEGG: dfe:Dfer_3191 hypothetical protein; SPTR: uncharacterized protein; manually curated; DoxX family protein 6286112 10873976 Runsl_5419 Runella slithyformis DSM 19594 DoxX family protein YP_004658842.1 6285024 R 761193 CDS YP_004658843.1 338214780 10873977 complement(6286112..6286600) 1 NC_015703.1 hypothetical protein 6286600 10873977 Runsl_5420 Runella slithyformis DSM 19594 hypothetical protein YP_004658843.1 6286112 R 761193 CDS YP_004658844.1 338214781 10873978 complement(6286591..6286782) 1 NC_015703.1 InterPro IPR011630; KEGG: sli:Slin_2316 hypothetical protein; PFAM: Protein of unknown function DUF1599; SPTR: uncharacterized protein; hypothetical protein 6286782 10873978 Runsl_5421 Runella slithyformis DSM 19594 hypothetical protein YP_004658844.1 6286591 R 761193 CDS YP_004658845.1 338214782 10873979 complement(6286841..6287392) 1 NC_015703.1 PFAM: Domain of Unknown Function (DUF1599); COGs: COG0294 Dihydropteroate synthase; InterPro IPR006390:IPR000489; KEGG: psn:Pedsa_3680 dihydropteroate synthase; PFAM: Dihydropteroate synthase, DHPS; PRIAM: Dihydropteroate synthase; SPTR: Dihydropteroate synthase; TIGRFAM: Dihydropteroate synthase; hypothetical protein 6287392 10873979 Runsl_5422 Runella slithyformis DSM 19594 hypothetical protein YP_004658845.1 6286841 R 761193 CDS YP_004658846.1 338214783 10873980 6287520..6288356 1 NC_015703.1 PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase; COGs: COG2259 membrane protein; InterPro IPR011637; KEGG: dfe:Dfer_3051 DoxX family protein; PFAM: DoxX; SPTR: DoxX family protein; dihydropteroate synthase 6288356 10873980 Runsl_5423 Runella slithyformis DSM 19594 dihydropteroate synthase YP_004658846.1 6287520 D 761193 CDS YP_004658847.1 338214784 10873981 complement(6288409..6288828) 1 NC_015703.1 PFAM: DoxX; KEGG: cpi:Cpin_5543 alpha-L-fucosidase; PRIAM: Alpha-L-fucosidase; SPTR: Alpha-L-fucosidase; DoxX family protein 6288828 10873981 Runsl_5424 Runella slithyformis DSM 19594 DoxX family protein YP_004658847.1 6288409 R 761193 CDS YP_004658848.1 338214785 10873982 complement(6288957..6291464) 1 NC_015703.1 COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro IPR003821:IPR013512:IPR013644; KEGG: sli:Slin_5921 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase; SPTR: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; alpha-L-fucosidase 6291464 10873982 Runsl_5425 Runella slithyformis DSM 19594 alpha-L-fucosidase YP_004658848.1 6288957 R 761193 CDS YP_004658849.1 338214786 10873983 6291852..6293018 1 NC_015703.1 PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR001478:IPR004387:IPR008915; KEGG: dfe:Dfer_4131 membrane-associated zinc metalloprotease; PFAM: Peptidase M50; PDZ/DHR/GLGF; SPTR: Membrane-associated zinc metalloprotease; TIGRFAM: Peptidase M50, membrane-associated zinc metallopeptidase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 6293018 10873983 Runsl_5426 Runella slithyformis DSM 19594 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_004658849.1 6291852 D 761193 CDS YP_004658850.1 338214787 10873984 6293265..6294572 1 NC_015703.1 PFAM: Peptidase M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP; KEGG: dfe:Dfer_4130 hypothetical protein; SPTR: uncharacterized protein; zinc metalloprotease 6294572 10873984 Runsl_5427 Runella slithyformis DSM 19594 zinc metalloprotease YP_004658850.1 6293265 D 761193 CDS YP_004658851.1 338214788 10873985 6294547..6295167 1 NC_015703.1 HAMAP: Ribosomal protein L35; InterPro IPR001706; KEGG: sli:Slin_2217 ribosomal protein L35; PFAM: Ribosomal protein L35; SPTR: 50S ribosomal protein L35; TIGRFAM: Ribosomal protein L35; hypothetical protein 6295167 10873985 Runsl_5428 Runella slithyformis DSM 19594 hypothetical protein YP_004658851.1 6294547 D 761193 CDS YP_004658852.1 338214789 10873986 6295290..6295484 1 NC_015703.1 PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35; COGs: COG0292 Ribosomal protein L20; HAMAP: Ribosomal protein L20; InterPro IPR005813; KEGG: dfe:Dfer_1224 ribosomal protein L20; PFAM: Ribosomal protein L20; SPTR: 50S ribosomal protein L20; TIGRFAM: Ribosomal protein L20; 50S ribosomal protein L35 6295484 10873986 Runsl_5429 Runella slithyformis DSM 19594 50S ribosomal protein L35 YP_004658852.1 6295290 D 761193 CDS YP_004658853.1 338214790 10873987 6295642..6295986 1 NC_015703.1 PFAM: Ribosomal protein L20; TIGRFAM: ribosomal protein L20; KEGG: sli:Slin_1510 hypothetical protein; SPTR: uncharacterized protein; 50S ribosomal protein L20 6295986 10873987 Runsl_5430 Runella slithyformis DSM 19594 50S ribosomal protein L20 YP_004658853.1 6295642 D 761193 CDS YP_004658854.1 338214791 10873988 6296107..6296550 1 NC_015703.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: fjo:Fjoh_0190 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; manually curated; hypothetical protein 6296550 10873988 Runsl_5431 Runella slithyformis DSM 19594 hypothetical protein YP_004658854.1 6296107 D 761193 CDS YP_004658855.1 338214792 10873989 6296634..6297200 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR000531; KEGG: dfe:Dfer_3109 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; AraC family transcriptional regulator 6297200 10873989 Runsl_5432 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004658855.1 6296634 D 761193 CDS YP_004658856.1 338214793 10873990 6297197..6299542 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; InterPro IPR006121; KEGG: dfe:Dfer_3112 heavy metal transport/detoxification protein; PFAM: Heavy metal transport/detoxification protein; SPTR: Heavy metal transport/detoxification protein; TonB-dependent receptor 6299542 10873990 Runsl_5433 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004658856.1 6297197 D 761193 CDS YP_004658857.1 338214794 10873991 6299691..6300044 1 NC_015703.1 PFAM: Heavy-metal-associated domain; KEGG: cpi:Cpin_5819 hypothetical protein; SPTR: uncharacterized protein; heavy metal transport/detoxification protein 6300044 10873991 Runsl_5434 Runella slithyformis DSM 19594 heavy metal transport/detoxification protein YP_004658857.1 6299691 D 761193 CDS YP_004658858.1 338214795 10873992 complement(6300114..6302573) 1 NC_015703.1 PFAM: esterase; COGs: COG1278 Cold shock protein; InterPro IPR011129:IPR002059; KEGG: dfe:Dfer_0895 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding domain protein; hypothetical protein 6302573 10873992 Runsl_5435 Runella slithyformis DSM 19594 hypothetical protein YP_004658858.1 6300114 R 761193 CDS YP_004658859.1 338214796 10873993 6302740..6302931 1 NC_015703.1 PFAM: 'Cold-shock' DNA-binding domain; cold-shock DNA-binding domain-containing protein 6302931 10873993 Runsl_5436 Runella slithyformis DSM 19594 cold-shock DNA-binding domain-containing protein YP_004658859.1 6302740 D 761193 CDS YP_004658860.1 338214797 10873994 6303542..6303802 1 NC_015703.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR003594; KEGG: sli:Slin_1040 response regulator receiver sensor signal transduction histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; SPTR: Response regulator receiver sensor signal transduction histidine kinase; hypothetical protein 6303802 10873994 Runsl_5437 Runella slithyformis DSM 19594 hypothetical protein YP_004658860.1 6303542 D 761193 CDS YP_004658861.1 338214798 10873995 6304414..6305520 1 NC_015703.1 PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR018060:IPR000005; KEGG: sli:Slin_2666 AraC family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Helix-turn-helix, AraC type; SMART: Signal transduction response regulator, receiver region; Helix-turn-helix, AraC domain; SPTR: Two component transcriptional regulator, AraC family; response regulator receiver sensor signal transduction histidine kinase 6305520 10873995 Runsl_5438 Runella slithyformis DSM 19594 response regulator receiver sensor signal transduction histidine kinase YP_004658861.1 6304414 D 761193 CDS YP_004658862.1 338214799 10873996 6306060..6306803 1 NC_015703.1 PFAM: Response regulator receiver domain; Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR012506; KEGG: mtt:Ftrac_1144 YhhN family protein; PFAM: YhhN-like; SPTR: uncharacterized protein; AraC family transcriptional regulator 6306803 10873996 Runsl_5439 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004658862.1 6306060 D 761193 CDS YP_004658863.1 338214800 10873997 complement(6306872..6307534) 1 NC_015703.1 PFAM: YhhN-like protein; InterPro IPR017515:IPR004360; KEGG: sli:Slin_5823 methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Methylmalonyl-CoA epimerase; TIGRFAM: Methylmalonyl-CoA epimerase; hypothetical protein 6307534 10873997 Runsl_5440 Runella slithyformis DSM 19594 hypothetical protein YP_004658863.1 6306872 R 761193 CDS YP_004658864.1 338214801 10873998 complement(6307624..6308028) 1 NC_015703.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase; InterPro IPR007828; KEGG: sli:Slin_5242 inositol oxygenase; PFAM: Protein of unknown function DUF706; PRIAM: Inositol oxygenase; SPTR: Inositol oxygenase; methylmalonyl-CoA epimerase 6308028 10873998 Runsl_5441 Runella slithyformis DSM 19594 methylmalonyl-CoA epimerase YP_004658864.1 6307624 R 761193 CDS YP_004658865.1 338214802 10873999 6308324..6309250 1 NC_015703.1 PFAM: Family of unknown function (DUF706); COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: dfe:Dfer_5702 transcriptional regulator, LacI family; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; inositol oxygenase 6309250 10873999 Runsl_5442 Runella slithyformis DSM 19594 inositol oxygenase YP_004658865.1 6308324 D 761193 CDS YP_004658866.1 338214803 10874000 6309376..6310404 1 NC_015703.1 PFAM: Bacterial regulatory proteins, lacI family; family; COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: dfe:Dfer_2637 fatty acid hydroxylase; PFAM: Fatty acid hydroxylase; SPTR: Fatty acid hydroxylase; LacI family transcriptional regulator 6310404 10874000 Runsl_5443 Runella slithyformis DSM 19594 LacI family transcriptional regulator YP_004658866.1 6309376 D 761193 CDS YP_004658867.1 338214804 10874001 complement(6310376..6311284) 1 NC_015703.1 PFAM: Fatty acid hydroxylase superfamily; COGs: COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; InterPro IPR000031; KEGG: sli:Slin_5995 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: Phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; fatty acid hydroxylase 6311284 10874001 Runsl_5444 Runella slithyformis DSM 19594 fatty acid hydroxylase YP_004658867.1 6310376 R 761193 CDS YP_004658868.1 338214805 10874002 6311401..6311895 1 NC_015703.1 PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein; InterPro IPR002482:IPR018392; KEGG: sli:Slin_5996 peptidoglycan-binding lysin domain protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Peptidoglycan-binding lysin domain protein; phosphoribosylaminoimidazole carboxylase catalytic subunit 6311895 10874002 Runsl_5445 Runella slithyformis DSM 19594 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_004658868.1 6311401 D 761193 CDS YP_004658869.1 338214806 10874003 6312025..6312753 1 NC_015703.1 PFAM: LysM domain; COGs: COG2908 conserved hypothetical protein; InterPro IPR004843; KEGG: sli:Slin_5686 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; peptidoglycan-binding lysin domain-containing protein 6312753 10874003 Runsl_5446 Runella slithyformis DSM 19594 peptidoglycan-binding lysin domain-containing protein YP_004658869.1 6312025 D 761193 CDS YP_004658870.1 338214807 10874004 complement(6312757..6313575) 1 NC_015703.1 PFAM: Calcineurin-like phosphoesterase; COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); InterPro IPR020019:IPR001451; KEGG: sli:Slin_5687 sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; SPTR: Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; TIGRFAM: Sialic acid O-acyltransferase, NeuD; metallophosphoesterase 6313575 10874004 Runsl_5447 Runella slithyformis DSM 19594 metallophosphoesterase YP_004658870.1 6312757 R 761193 CDS YP_004658871.1 338214808 10874005 6313750..6314382 1 NC_015703.1 TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; COGs: COG1195 Recombinational DNA repair ATPase (RecF pathway); HAMAP: DNA replication and repair protein recF; InterPro IPR001238:IPR003395; KEGG: dfe:Dfer_3886 DNA replication and repair protein RecF; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: DNA replication and repair protein recF; TIGRFAM: DNA-binding, RecF; sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family 6314382 10874005 Runsl_5448 Runella slithyformis DSM 19594 sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family YP_004658871.1 6313750 D 761193 CDS YP_004658872.1 338214809 10874006 complement(6314430..6315530) 1 NC_015703.1 PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: recF protein; COGs: COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type alpha subunit; InterPro IPR017597:IPR001017; KEGG: sli:Slin_5509 pyruvate dehydrogenase (acetyl-transferring) E1 component, subunit alpha; PFAM: Dehydrogenase, E1 component; PRIAM: Pyruvate dehydrogenase (acetyl-transferring); SPTR: Pyruvate dehydrogenase (Acetyl-transferring) E1 component, alpha subunit; TIGRFAM: Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y; DNA replication and repair protein RecF 6315530 10874006 Runsl_5449 Runella slithyformis DSM 19594 DNA replication and repair protein RecF YP_004658872.1 6314430 R 761193 CDS YP_004658873.1 338214810 10874007 6315664..6316683 1 NC_015703.1 PFAM: Dehydrogenase E1 component; TIGRFAM: pyruvate dehydrogenase E1 component, alpha subunit; COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: sli:Slin_5158 hypothetical protein; PFAM: Protein of unknown function DUF140; SPTR: uncharacterized protein; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 6316683 10874007 Runsl_5450 Runella slithyformis DSM 19594 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha YP_004658873.1 6315664 D 761193 CDS YP_004658874.1 338214811 10874008 6316772..6317506 1 NC_015703.1 PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000835:IPR000600; KEGG: sli:Slin_3041 ROK family protein; PFAM: ROK; HTH transcriptional regulator, MarR; PRIAM: Glucokinase; SPTR: ROK family protein; hypothetical protein 6317506 10874008 Runsl_5451 Runella slithyformis DSM 19594 hypothetical protein YP_004658874.1 6316772 D 761193 CDS YP_004658875.1 338214812 10874009 complement(6317503..6318729) 1 NC_015703.1 PFAM: ROK family; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: lby:Lbys_2803 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; glucokinase 6318729 10874009 Runsl_5452 Runella slithyformis DSM 19594 glucokinase YP_004658875.1 6317503 R 761193 CDS YP_004658876.1 338214813 10874010 6319196..6322513 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: lby:Lbys_2804 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 6322513 10874010 Runsl_5453 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004658876.1 6319196 D 761193 CDS YP_004658877.1 338214814 10874011 6322547..6324121 1 NC_015703.1 InterPro IPR014914; KEGG: sli:Slin_2003 RES domain protein; PFAM: RES; SPTR: RES domain protein; hypothetical protein 6324121 10874011 Runsl_5454 Runella slithyformis DSM 19594 hypothetical protein YP_004658877.1 6322547 D 761193 CDS YP_004658878.1 338214815 10874012 6324259..6324687 1 NC_015703.1 PFAM: RES domain; InterPro IPR000866; KEGG: dfe:Dfer_2065 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; RES domain-containing protein 6324687 10874012 Runsl_5455 Runella slithyformis DSM 19594 RES domain-containing protein YP_004658878.1 6324259 D 761193 CDS YP_004658879.1 338214816 10874013 6324871..6326295 1 NC_015703.1 PFAM: AhpC/TSA family; COGs: COG1895 conserved hypothetical protein related to C-terminal domain of eukaryotic chaperone SACSIN; InterPro IPR007842; KEGG: mja:MJ_0142 hypothetical protein; PFAM: HEPN; SPTR: UPF0332 protein MJ0142; alkyl hydroperoxide reductase 6326295 10874013 Runsl_5456 Runella slithyformis DSM 19594 alkyl hydroperoxide reductase YP_004658879.1 6324871 D 761193 CDS YP_004658880.1 338214817 10874014 complement(6326296..6326712) 1 NC_015703.1 PFAM: HEPN domain; InterPro IPR002934; KEGG: sli:Slin_2850 DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase; SPTR: DNA polymerase beta domain protein region; HEPN domain-containing protein 6326712 10874014 Runsl_5457 Runella slithyformis DSM 19594 HEPN domain-containing protein YP_004658880.1 6326296 R 761193 CDS YP_004658881.1 338214818 10874015 complement(6326696..6327019) 1 NC_015703.1 PFAM: Nucleotidyltransferase domain; COGs: COG3127 ABC-type transport system involved in lysophospholipase L1 biosynthesis permease component; InterPro IPR003838; KEGG: phe:Phep_1597 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; DNA polymerase beta domain-containing protein 6327019 10874015 Runsl_5458 Runella slithyformis DSM 19594 DNA polymerase beta domain-containing protein YP_004658881.1 6326696 R 761193 CDS YP_004658882.1 338214819 10874016 complement(6327071..6329608) 1 NC_015703.1 PFAM: Predicted permease; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_5709 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; hypothetical protein 6329608 10874016 Runsl_5459 Runella slithyformis DSM 19594 hypothetical protein YP_004658882.1 6327071 R 761193 CDS YP_004658883.1 338214820 10874017 complement(6329701..6330384) 1 NC_015703.1 PFAM: ABC transporter; COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: dfe:Dfer_5710 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family; phosphonate-transporting ATPase 6330384 10874017 Runsl_5460 Runella slithyformis DSM 19594 phosphonate-transporting ATPase YP_004658883.1 6329701 R 761193 CDS YP_004658884.1 338214821 10874018 6330494..6331186 1 NC_015703.1 PFAM: GDSL-like Lipase/Acylhydrolase; InterPro IPR002860; KEGG: sli:Slin_1572 glycosyl hydrolase, BNR repeat-containing protein; PFAM: BNR repeat; SPTR: Glycosyl hydrolase, BNR repeat-containing protein; G-D-S-L family lipolytic protein 6331186 10874018 Runsl_5461 Runella slithyformis DSM 19594 G-D-S-L family lipolytic protein YP_004658884.1 6330494 D 761193 CDS YP_004658885.1 338214822 10874019 6331311..6334529 1 NC_015703.1 PFAM: BNR/Asp-box repeat; KEGG: chu:CHU_2294 hypothetical protein; SPTR: uncharacterized protein; glycosyl hydrolase family protein 6334529 10874019 Runsl_5462 Runella slithyformis DSM 19594 glycosyl hydrolase family protein YP_004658885.1 6331311 D 761193 CDS YP_004658886.1 338214823 10874020 6334699..6335082 1 NC_015703.1 COGs: COG2017 Galactose mutarotase; InterPro IPR008183; KEGG: cpi:Cpin_5592 aldose 1-epimerase; PFAM: Aldose 1-epimerase; SPTR: Aldose 1-epimerase; hypothetical protein 6335082 10874020 Runsl_5463 Runella slithyformis DSM 19594 hypothetical protein YP_004658886.1 6334699 D 761193 CDS YP_004658887.1 338214824 10874021 complement(6335095..6335964) 1 NC_015703.1 PFAM: Aldose 1-epimerase; InterPro IPR002223; KEGG: fbc:FB2170_08659 proteinase inhibitor I2, Kunitz metazoa; PFAM: Proteinase inhibitor I2, Kunitz metazoa; SMART: Proteinase inhibitor I2, Kunitz metazoa; SPTR: Proteinase inhibitor I2, Kunitz metazoa; aldose 1-epimerase 6335964 10874021 Runsl_5464 Runella slithyformis DSM 19594 aldose 1-epimerase YP_004658887.1 6335095 R 761193 CDS YP_004658888.1 338214825 10874022 complement(6336035..6336289) 1 NC_015703.1 PFAM: Kunitz/Bovine pancreatic trypsin inhibitor domain; COGs: COG3506 conserved hypothetical protein; InterPro IPR009784; KEGG: cbk:CLL_A1994 hypothetical protein; PFAM: Protein of unknown function DUF1349; SPTR: uncharacterized protein; proteinase inhibitor I2 Kunitz metazoa 6336289 10874022 Runsl_5465 Runella slithyformis DSM 19594 proteinase inhibitor I2 Kunitz metazoa YP_004658888.1 6336035 R 761193 CDS YP_004658889.1 338214826 10874023 complement(6336398..6336982) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1349); COGs: COG2055 Malate/L-lactate dehydrogenase; InterPro IPR003767; KEGG: phe:Phep_3438 2,3-diketo-L-gulonate reductase; PFAM: Malate/L-lactate dehydrogenase; PRIAM: 3-dehydro-L-gulonate 2-dehydrogenase; SPTR: Malate/L-lactate dehydrogenase; hypothetical protein 6336982 10874023 Runsl_5466 Runella slithyformis DSM 19594 hypothetical protein YP_004658889.1 6336398 R 761193 CDS YP_004658890.1 338214827 10874024 complement(6336996..6338093) 1 NC_015703.1 PFAM: Malate/L-lactate dehydrogenase; COGs: COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin; InterPro IPR008775; KEGG: tau:Tola_1906 phytanoyl-CoA dioxygenase; PFAM: Phytanoyl-CoA dioxygenase; SPTR: phytanoyl-CoA dioxygenase; 3-dehydro-L-gulonate 2-dehydrogenase 6338093 10874024 Runsl_5467 Runella slithyformis DSM 19594 3-dehydro-L-gulonate 2-dehydrogenase YP_004658890.1 6336996 R 761193 CDS YP_004658891.1 338214828 10874025 complement(6338202..6338939) 1 NC_015703.1 PFAM: Phytanoyl-CoA dioxygenase (PhyH); COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: fbc:FB2170_06925 transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator; phytanoyl-CoA dioxygenase 6338939 10874025 Runsl_5468 Runella slithyformis DSM 19594 phytanoyl-CoA dioxygenase YP_004658891.1 6338202 R 761193 CDS YP_004658892.1 338214829 10874026 6339138..6339986 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG0405 Gamma-glutamyltransferase; InterPro IPR000101; KEGG: dfe:Dfer_5278 gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase; PRIAM: Gamma-glutamyltransferase; SPTR: Gamma-glutamyltransferase; AraC family transcriptional regulator 6339986 10874026 Runsl_5469 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004658892.1 6339138 D 761193 CDS YP_004658893.1 338214830 10874027 complement(6340298..6342169) 1 NC_015703.1 PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase; KEGG: met:M446_7061 hypothetical protein; SPTR: uncharacterized protein; gamma-glutamyltransferase 6342169 10874027 Runsl_5470 Runella slithyformis DSM 19594 gamma-glutamyltransferase YP_004658893.1 6340298 R 761193 CDS YP_004658894.1 338214831 10874028 complement(6342246..6343115) 1 NC_015703.1 TIGRFAM: TIGR02646 family protein; COGs: COG3950 ATP-binding protein involved in virulence; KEGG: met:M446_7060 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6343115 10874028 Runsl_5471 Runella slithyformis DSM 19594 hypothetical protein YP_004658894.1 6342246 R 761193 CDS YP_004658895.1 338214832 10874029 complement(6343096..6344466) 1 NC_015703.1 PFAM: RecF/RecN/SMC N terminal domain; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073:IPR000383; KEGG: tsa:AciPR4_0063 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; Peptidase S15; SPTR: Alpha/beta hydrolase fold family hydrolase; hypothetical protein 6344466 10874029 Runsl_5472 Runella slithyformis DSM 19594 hypothetical protein YP_004658895.1 6343096 R 761193 CDS YP_004658896.1 338214833 10874030 6344659..6345558 1 NC_015703.1 PFAM: alpha/beta hydrolase fold; COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: sli:Slin_4966 hypothetical protein; PFAM: Protein of unknown function DUF58; SPTR: uncharacterized protein; alpha/beta hydrolase 6345558 10874030 Runsl_5473 Runella slithyformis DSM 19594 alpha/beta hydrolase YP_004658896.1 6344659 D 761193 CDS YP_004658897.1 338214834 10874031 complement(6345626..6346957) 1 NC_015703.1 PFAM: Protein of unknown function DUF58; COGs: COG0009 translation factor (SUA5); InterPro IPR004388:IPR006070; KEGG: sli:Slin_1614 SUA5/YciO/YrdC/YwlC family protein; PFAM: Sua5/YciO/YrdC, N-terminal; SPTR: Sua5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; hypothetical protein 6346957 10874031 Runsl_5474 Runella slithyformis DSM 19594 hypothetical protein YP_004658897.1 6345626 R 761193 CDS YP_004658898.1 338214835 10874032 complement(6347001..6347618) 1 NC_015703.1 PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: dfe:Dfer_5016 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; Sua5/YciO/YrdC/YwlC family protein 6347618 10874032 Runsl_5475 Runella slithyformis DSM 19594 Sua5/YciO/YrdC/YwlC family protein YP_004658898.1 6347001 R 761193 CDS YP_004658899.1 338214836 10874033 complement(6347877..6348881) 1 NC_015703.1 PFAM: Glycosyl transferase 2; COGs: COG1295 membrane protein; InterPro IPR017039:IPR004664; KEGG: dfe:Dfer_5015 ribonuclease BN; PFAM: Ribonuclease BN-related; SPTR: Ribonuclease BN; TIGRFAM: Ribonuclease BN; family 2 glycosyl transferase 6348881 10874033 Runsl_5476 Runella slithyformis DSM 19594 family 2 glycosyl transferase YP_004658899.1 6347877 R 761193 CDS YP_004658900.1 338214837 10874034 complement(6349280..6350194) 1 NC_015703.1 PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN); COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_1720 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; ribonuclease BN 6350194 10874034 Runsl_5477 Runella slithyformis DSM 19594 ribonuclease BN YP_004658900.1 6349280 R 761193 CDS YP_004658901.1 338214838 10874035 complement(6350368..6352650) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG0824 thioesterase; InterPro IPR006684:IPR006683; KEGG: dfe:Dfer_5014 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein; TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; TonB-dependent receptor 6352650 10874035 Runsl_5478 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004658901.1 6350368 R 761193 CDS YP_004658902.1 338214839 10874036 complement(6352919..6353353) 1 NC_015703.1 PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family; COGs: COG1559 periplasmic solute-binding protein; InterPro IPR003770; KEGG: sli:Slin_1618 aminodeoxychorismate lyase; PFAM: Uncharacterised protein family YceG-like; SPTR: Aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family YceG-like; 4-hydroxybenzoyl-CoA thioesterase 6353353 10874036 Runsl_5479 Runella slithyformis DSM 19594 4-hydroxybenzoyl-CoA thioesterase YP_004658902.1 6352919 R 761193 CDS YP_004658903.1 338214840 10874037 complement(6353463..6354506) 1 NC_015703.1 PFAM: YceG-like family; TIGRFAM: conserved hypothetical protein, YceG family; KEGG: dfe:Dfer_2763 hypothetical protein; SPTR: uncharacterized protein; aminodeoxychorismate lyase 6354506 10874037 Runsl_5480 Runella slithyformis DSM 19594 aminodeoxychorismate lyase YP_004658903.1 6353463 R 761193 CDS YP_004658904.1 338214841 10874038 6355008..6355571 1 NC_015703.1 PFAM: DinB family; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: msv:Mesil_2652 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; hypothetical protein 6355571 10874038 Runsl_5481 Runella slithyformis DSM 19594 hypothetical protein YP_004658904.1 6355008 D 761193 CDS YP_004658905.1 338214842 10874039 6355617..6356486 1 NC_015703.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase 6356486 10874039 Runsl_5482 Runella slithyformis DSM 19594 alpha/beta hydrolase YP_004658905.1 6355617 D 761193 CDS YP_004658906.1 338214843 10874040 6356534..6356725 1 NC_015703.1 COGs: COG3511 Phospholipase C; InterPro IPR006311:IPR017767:IPR007312:IPR008475; KEGG: cpi:Cpin_1336 phospholipase C, phosphocholine-specific; PFAM: Phosphoesterase; Protein of unknown function DUF756; PRIAM: Phospholipase C; SPTR: Phospholipase C, phosphocholine-specific; TIGRFAM: Phospholipase C, phosphocholine-specific; Twin-arginine translocation pathway, signal sequence; hypothetical protein 6356725 10874040 Runsl_5483 Runella slithyformis DSM 19594 hypothetical protein YP_004658906.1 6356534 D 761193 CDS YP_004658907.1 338214844 10874041 6356920..6359496 1 NC_015703.1 PFAM: Phosphoesterase; Domain of unknown function (DUF756); TIGRFAM: phospholipase C, phosphocholine-specific, Pseudomonas-type; InterPro IPR003158; KEGG: aba:Acid345_2503 hypothetical protein; PFAM: Photosynthetic reaction centre, cytochrome c subunit; SPTR: uncharacterized protein; phospholipase C, phosphocholine-specific 6359496 10874041 Runsl_5484 Runella slithyformis DSM 19594 phospholipase C, phosphocholine-specific YP_004658907.1 6356920 D 761193 CDS YP_004658908.1 338214845 10874042 6359893..6360411 1 NC_015703.1 PFAM: Photosynthetic reaction centre cytochrome C subunit; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307:IPR011418; KEGG: sli:Slin_3432 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; AP endonuclease, family 2, C-terminal; SPTR: Xylose isomerase domain protein TIM barrel; photosynthetic reaction centre cytochrome c subunit 6360411 10874042 Runsl_5485 Runella slithyformis DSM 19594 photosynthetic reaction centre cytochrome c subunit YP_004658908.1 6359893 D 761193 CDS YP_004658909.1 338214846 10874043 complement(6360531..6361583) 1 NC_015703.1 PFAM: AP endonuclease 2 C terminus; Xylose isomerase-like TIM barrel; Prodigal; manually curated; xylose isomerase domain-containing protein 6361583 10874043 Runsl_5486 Runella slithyformis DSM 19594 xylose isomerase domain-containing protein YP_004658909.1 6360531 R 761193 CDS YP_004658910.1 338214847 10874045 complement(6362041..6363165) 1 NC_015703.1 PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain; InterPro IPR011701; KEGG: dfe:Dfer_5059 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; oxidoreductase domain-containing protein 6363165 10874045 Runsl_5488 Runella slithyformis DSM 19594 oxidoreductase domain-containing protein YP_004658910.1 6362041 R 761193 CDS YP_004658911.1 338214848 10874046 6363467..6364693 1 NC_015703.1 PFAM: Major Facilitator Superfamily; InterPro IPR019734:IPR001440; KEGG: sli:Slin_3025 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; major facilitator superfamily protein 6364693 10874046 Runsl_5489 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004658911.1 6363467 D 761193 CDS YP_004658912.1 338214849 10874047 complement(6364926..6365636) 1 NC_015703.1 PFAM: Tetratricopeptide repeat; KEGG: sli:Slin_5740 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6365636 10874047 Runsl_5490 Runella slithyformis DSM 19594 hypothetical protein YP_004658912.1 6364926 R 761193 CDS YP_004658913.1 338214850 10874048 6365824..6366486 1 NC_015703.1 COGs: COG0580 Glycerol uptake facilitator and related permease (Major Intrinsic Protein Family); InterPro IPR000425; KEGG: sli:Slin_5936 major intrinsic protein; PFAM: Major intrinsic protein; SPTR: Major intrinsic protein; hypothetical protein 6366486 10874048 Runsl_5491 Runella slithyformis DSM 19594 hypothetical protein YP_004658913.1 6365824 D 761193 CDS YP_004658914.1 338214851 10874049 complement(6366587..6367285) 1 NC_015703.1 PFAM: Major intrinsic protein; TIGRFAM: MIP family channel proteins; COGs: COG4993 Glucose dehydrogenase; InterProIPR018391:IPR019551:IPR002372:IPR019556:IPR 003088; KEGG: dfe:Dfer_4957 pyrrolo-quinoline quinone; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal; Cytochrome c, class I; PRIAM: Quinoprotein glucose dehydrogenase; SPTR: Pyrrolo-quinoline quinone; major intrinsic protein 6367285 10874049 Runsl_5492 Runella slithyformis DSM 19594 major intrinsic protein YP_004658914.1 6366587 R 761193 CDS YP_004658915.1 338214852 10874050 complement(6367392..6369503) 1 NC_015703.1 PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus; Cytochrome c; PQQ enzyme repeat; COGs: COG0015 Adenylosuccinate lyase; InterPro IPR004769:IPR000362:IPR013539; KEGG: sli:Slin_5955 adenylosuccinate lyase; PFAM: Adenylosuccinate lyase C-terminal; Fumarate lyase; PRIAM: Adenylosuccinate lyase; SPTR: Adenylosuccinate lyase; TIGRFAM: Adenylosuccinate lyase; quinoprotein glucose dehydrogenase 6369503 10874050 Runsl_5493 Runella slithyformis DSM 19594 quinoprotein glucose dehydrogenase YP_004658915.1 6367392 R 761193 CDS YP_004658916.1 338214853 10874051 6369608..6370951 1 NC_015703.1 PFAM: Lyase; Adenylosuccinate lyase C-terminal; TIGRFAM: adenylosuccinate lyase; COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: mtt:Ftrac_1361 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PRIAM: Nitrilase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; adenylosuccinate lyase 6370951 10874051 Runsl_5494 Runella slithyformis DSM 19594 adenylosuccinate lyase YP_004658916.1 6369608 D 761193 CDS YP_004658917.1 338214854 10874052 complement(6371077..6372009) 1 NC_015703.1 PFAM: Carbon-nitrogen hydrolase; COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterPro IPR005814; KEGG: dfe:Dfer_3092 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: Aminotransferase class-III; nitrilase 6372009 10874052 Runsl_5495 Runella slithyformis DSM 19594 nitrilase YP_004658917.1 6371077 R 761193 CDS YP_004658918.1 338214855 10874053 complement(6372012..6373370) 1 NC_015703.1 PFAM: Aminotransferase class-III; COGs: COG0628 permease; InterPro IPR002549; KEGG: cpi:Cpin_6357 hypothetical protein; PFAM: Uncharacterised protein family UPF0118; SPTR: Transport protein; acetylornithine transaminase 6373370 10874053 Runsl_5496 Runella slithyformis DSM 19594 acetylornithine transaminase YP_004658918.1 6372012 R 761193 CDS YP_004658919.1 338214856 10874054 complement(6373516..6374610) 1 NC_015703.1 PFAM: Domain of unknown function DUF20; COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873; KEGG: chu:CHU_3595 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: Long-chain-fatty-acid--CoA ligase (Acyl-CoA synthetase); hypothetical protein 6374610 10874054 Runsl_5497 Runella slithyformis DSM 19594 hypothetical protein YP_004658919.1 6373516 R 761193 CDS YP_004658920.1 338214857 10874055 6374945..6376714 1 NC_015703.1 PFAM: AMP-binding enzyme; COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011110:IPR011123:IPR011712:IPR003594; KEGG: sli:Slin_5256 histidine kinase; PFAM: Two component regulator three Y; Two component regulator propeller; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; ATP-binding region, ATPase-like; SPTR: Histidine kinase; long-chain-fatty-acid--CoA ligase 6376714 10874055 Runsl_5498 Runella slithyformis DSM 19594 long-chain-fatty-acid--CoA ligase YP_004658920.1 6374945 D 761193 CDS YP_004658921.1 338214858 10874056 complement(6376794..6379898) 1 NC_015703.1 PFAM: Y_Y_Y domain; Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Two component regulator propeller; COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: dfe:Dfer_0193 glycoside hydrolase 43; PFAM: Glycoside hydrolase, family 43; SPTR: Glycoside hydrolase 43; signal transduction histidine kinase 6379898 10874056 Runsl_5499 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004658921.1 6376794 R 761193 CDS YP_004658922.1 338214859 10874057 complement(6379966..6380913) 1 NC_015703.1 PFAM: Glycosyl hydrolases family 43; COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: dfe:Dfer_2712 peptidase U61 LD-carboxypeptidase A; PFAM: Peptidase S66, LD-carboxypeptidase A; SPTR: Peptidase U61 LD-carboxypeptidase A; glycoside hydrolase 6380913 10874057 Runsl_5500 Runella slithyformis DSM 19594 glycoside hydrolase YP_004658922.1 6379966 R 761193 CDS YP_004658923.1 338214860 10874058 complement(6380983..6381888) 1 NC_015703.1 PFAM: LD-carboxypeptidase; COGs: COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); InterPro IPR001457; KEGG: dfe:Dfer_4038 NADH-ubiquinone/plastoquinone oxidoreductase chain 6; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; SPTR: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; peptidase U61 6381888 10874058 Runsl_5501 Runella slithyformis DSM 19594 peptidase U61 YP_004658923.1 6380983 R 761193 CDS YP_004658924.1 338214861 10874059 complement(6381955..6382482) 1 NC_015703.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: dfe:Dfer_3391 hypothetical protein; SPTR: uncharacterized protein; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 6382482 10874059 Runsl_5502 Runella slithyformis DSM 19594 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_004658924.1 6381955 R 761193 CDS YP_004658925.1 338214862 10874060 complement(6382554..6383045) 1 NC_015703.1 COGs: COG0541 Signal recognition particle GTPase; InterProIPR003593:IPR004780:IPR013822:IPR000897:IPR 004125; KEGG: dfe:Dfer_3390 signal recognition particle protein; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; SMART: ATPase, AAA+ type, core; SPTR: Signal recognition particle protein; TIGRFAM: Signal recognition particle, SRP; hypothetical protein 6383045 10874060 Runsl_5503 Runella slithyformis DSM 19594 hypothetical protein YP_004658925.1 6382554 R 761193 CDS YP_004658926.1 338214863 10874061 complement(6383091..6384404) 1 NC_015703.1 PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein; InterPro IPR005181; KEGG: sli:Slin_5097 hypothetical protein; PFAM: Protein of unknown function DUF303, acetylesterase SPTR: uncharacterized protein; signal recognition particle protein 6384404 10874061 Runsl_5504 Runella slithyformis DSM 19594 signal recognition particle protein YP_004658926.1 6383091 R 761193 CDS YP_004658927.1 338214864 10874062 6384551..6386722 1 NC_015703.1 PFAM: Domain of unknown function (DUF303); COGs: COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); HAMAP: NAD(P)H-quinone oxidoreductase subunit 3; InterPro IPR000440; KEGG: sli:Slin_5098 NADH-ubiquinone/plastoquinone oxidoreductase chain 3; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3; SPTR: NADH-quinone oxidoreductase subunit; hypothetical protein 6386722 10874062 Runsl_5505 Runella slithyformis DSM 19594 hypothetical protein YP_004658927.1 6384551 D 761193 CDS YP_004658928.1 338214865 10874063 6386870..6387238 1 NC_015703.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; COGs: COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase; HAMAP: NAD(P)H-quinone oxidoreductase subunit K; InterPro IPR006138:IPR006137; KEGG: sli:Slin_5099 NADH-quinone oxidoreductase subunit beta; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit B 2; TIGRFAM: NADH:ubiquinone oxidoreductase, 20kDa subunit; NAD(P)H-quinone oxidoreductase subunit 3 6387238 10874063 Runsl_5506 Runella slithyformis DSM 19594 NAD(P)H-quinone oxidoreductase subunit 3 YP_004658928.1 6386870 D 761193 CDS YP_004658929.1 338214866 10874064 6387325..6387870 1 NC_015703.1 PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; COGs: COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit J; InterPro IPR010218:IPR001268; KEGG: dfe:Dfer_4086 NADH dehydrogenase (ubiquinone) 30 kDa subunit; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit; SPTR: NADH-quinone oxidoreductase subunit C 2; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; NAD(P)H-quinone oxidoreductase subunit K 6387870 10874064 Runsl_5507 Runella slithyformis DSM 19594 NAD(P)H-quinone oxidoreductase subunit K YP_004658929.1 6387325 D 761193 CDS YP_004658930.1 338214867 10874065 6387962..6388462 1 NC_015703.1 PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; COGs: COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; HAMAP: NAD(P)H-quinone oxidoreductase subunit H; InterPro IPR001135; KEGG: sli:Slin_5101 NADH dehydrogenase (quinone); PFAM: NADH-quinone oxidoreductase, subunit D; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH dehydrogenase (Quinone); NAD(P)H-quinone oxidoreductase subunit J 6388462 10874065 Runsl_5508 Runella slithyformis DSM 19594 NAD(P)H-quinone oxidoreductase subunit J YP_004658930.1 6387962 D 761193 CDS YP_004658931.1 338214868 10874066 6388540..6389772 1 NC_015703.1 PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; TIGRFAM: NADH dehydrogenase I, D subunit; COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023; KEGG: dfe:Dfer_4084 NADH-quinone oxidoreductase, E subunit; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; NAD(P)H-quinone oxidoreductase subunit H 6389772 10874066 Runsl_5509 Runella slithyformis DSM 19594 NAD(P)H-quinone oxidoreductase subunit H YP_004658931.1 6388540 D 761193 CDS YP_004658932.1 338214869 10874067 6389785..6390285 1 NC_015703.1 PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterPro IPR011537:IPR011538:IPR019554:IPR019575; KEGG: sli:Slin_5103 NADH-quinone oxidoreductase, F subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH ubiquinone oxidoreductase, F subunit; NADH-quinone oxidoreductase subunit E 6390285 10874067 Runsl_5510 Runella slithyformis DSM 19594 NADH-quinone oxidoreductase subunit E YP_004658932.1 6389785 D 761193 CDS YP_004658933.1 338214870 10874068 6390306..6391646 1 NC_015703.1 PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain; TIGRFAM: NADH-quinone oxidoreductase, F subunit; COGs: COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); InterPro IPR001041:IPR019574; KEGG: dfe:Dfer_4082 ferredoxin; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; PRIAM: NADH dehydrogenase (quinone); SPTR: Ferredoxin; NADH-quinone oxidoreductase subunit F 6391646 10874068 Runsl_5511 Runella slithyformis DSM 19594 NADH-quinone oxidoreductase subunit F YP_004658933.1 6390306 D 761193 CDS YP_004658934.1 338214871 10874069 6391678..6392769 1 NC_015703.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; COGs: COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); HAMAP: NAD(P)H-quinone oxidoreductase subunit 1; InterPro IPR001694; KEGG: sli:Slin_5105 NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone oxidoreductase, subunit 1; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit H 2; NADH dehydrogenase (quinone) 6392769 10874069 Runsl_5512 Runella slithyformis DSM 19594 NADH dehydrogenase (quinone) YP_004658934.1 6391678 D 761193 CDS YP_004658935.1 338214872 10874070 6392830..6393927 1 NC_015703.1 PFAM: NADH dehydrogenase; COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); HAMAP: NADH-quinone oxidoreductase, chain I; InterPro IPR010226:IPR001450; KEGG: dfe:Dfer_4080 NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit I; TIGRFAM: NADH-quinone oxidoreductase, chain I; NAD(P)H-quinone oxidoreductase subunit 1 6393927 10874070 Runsl_5513 Runella slithyformis DSM 19594 NAD(P)H-quinone oxidoreductase subunit 1 YP_004658935.1 6392830 D 761193 CDS YP_004658936.1 338214873 10874071 6393995..6394573 1 NC_015703.1 PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I; COGs: COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); InterPro IPR001457; KEGG: dfe:Dfer_4079 NADH-ubiquinone/plastoquinone oxidoreductase chain 6; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; SPTR: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; NAD(P)H-quinone oxidoreductase subunit I 6394573 10874071 Runsl_5514 Runella slithyformis DSM 19594 NAD(P)H-quinone oxidoreductase subunit I YP_004658936.1 6393995 D 761193 CDS YP_004658937.1 338214874 10874072 6394645..6395190 1 NC_015703.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; COGs: COG4335 DNA alkylation repair protein; KEGG: cpi:Cpin_5072 heat domain containing protein; SPTR: HEAT domain containing protein; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 6395190 10874072 Runsl_5515 Runella slithyformis DSM 19594 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_004658937.1 6394645 D 761193 CDS YP_004658938.1 338214875 10874073 complement(6395260..6396360) 1 NC_015703.1 COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR001753:IPR006176:IPR006108; KEGG: sli:Slin_6109 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; PRIAM: 3-hydroxybutyryl-CoA epimerase; SPTR: 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; heat domain-containing protein 6396360 10874073 Runsl_5516 Runella slithyformis DSM 19594 heat domain-containing protein YP_004658938.1 6395260 R 761193 CDS YP_004658939.1 338214876 10874074 complement(6396931..6399099) 1 NC_015703.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR002155; KEGG: sli:Slin_6110 acetyl-CoA acetyltransferase; PRIAM: Acetyl-CoA C-acyltransferase; SPTR: Acetyl-CoA acetyltransferase; TIGRFAM: Thiolase; 3-hydroxybutyryl-CoA epimerase 6399099 10874074 Runsl_5517 Runella slithyformis DSM 19594 3-hydroxybutyryl-CoA epimerase YP_004658939.1 6396931 R 761193 CDS YP_004658940.1 338214877 10874075 complement(6399139..6400344) 1 NC_015703.1 PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; KEGG: sli:Slin_1607 hypothetical protein; SPTR: uncharacterized protein; acetyl-CoA acetyltransferase 6400344 10874075 Runsl_5518 Runella slithyformis DSM 19594 acetyl-CoA acetyltransferase YP_004658940.1 6399139 R 761193 CDS YP_004658941.1 338214878 10874076 complement(6400473..6401033) 1 NC_015703.1 COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: sli:Slin_3474 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; hypothetical protein 6401033 10874076 Runsl_5519 Runella slithyformis DSM 19594 hypothetical protein YP_004658941.1 6400473 R 761193 CDS YP_004658942.1 338214879 10874077 complement(6401317..6402564) 1 NC_015703.1 PFAM: Major Facilitator Superfamily; InterPro IPR010496; KEGG: sli:Slin_4772 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; major facilitator superfamily protein 6402564 10874077 Runsl_5520 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004658942.1 6401317 R 761193 CDS YP_004658943.1 338214880 10874078 complement(6402577..6404367) 1 NC_015703.1 PFAM: PA14 domain; Domain of Unknown Function (DUF1080); InterPro IPR013078; KEGG: shg:Sph21_1181 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase; hypothetical protein 6404367 10874078 Runsl_5521 Runella slithyformis DSM 19594 hypothetical protein YP_004658943.1 6402577 R 761193 CDS YP_004658944.1 338214881 10874079 complement(6404504..6405382) 1 NC_015703.1 PFAM: Phosphoglycerate mutase; COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; InterPro IPR005750:IPR001986; KEGG: dfe:Dfer_4252 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; PRIAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; SPTR:UDP-N-acetylglucosamine1-carboxyvinyltransfera se; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; phosphoglycerate mutase 6405382 10874079 Runsl_5522 Runella slithyformis DSM 19594 phosphoglycerate mutase YP_004658944.1 6404504 R 761193 CDS YP_004658947.1 338214882 10874082 6407606..6408304 1 NC_015703.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: fba:FIC_01768 beta-lactamase-like protein; SPTR: Beta-lactamase-like protein; hypothetical protein 6408304 10874082 Runsl_5525 Runella slithyformis DSM 19594 hypothetical protein YP_004658947.1 6407606 D 761193 CDS YP_004658948.1 338214883 10874083 complement(6408401..6409249) 1 NC_015703.1 PFAM: Metallo-beta-lactamase superfamily; COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 013656:IPR013655; KEGG: fjo:Fjoh_3360 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-3; PAS fold-4; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAC motif; PAS; SPTR: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS; beta-lactamase-like protein 6409249 10874083 Runsl_5526 Runella slithyformis DSM 19594 beta-lactamase-like protein YP_004658948.1 6408401 R 761193 CDS YP_004658949.1 338214884 10874084 complement(6409298..6412534) 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR000014:IPR003661:IPR003594; KEGG: cyj:Cyan7822_2525 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; PAS/PAC sensor signal transduction histidine kinase 6412534 10874084 Runsl_5527 Runella slithyformis DSM 19594 PAS/PAC sensor signal transduction histidine kinase YP_004658949.1 6409298 R 761193 CDS YP_004658950.1 338214885 10874085 6412984..6414123 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR003661:IPR003594:IPR001789:IPR000014:IPR 001610:IPR013656:IPR013655; KEGG: npu:Npun_F2908 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; PAS fold-4; PAS fold-3; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; PAS/PAC sensor signal transduction histidine kinase 6414123 10874085 Runsl_5528 Runella slithyformis DSM 19594 PAS/PAC sensor signal transduction histidine kinase YP_004658950.1 6412984 D 761193 CDS YP_004658951.1 338214886 10874086 complement(6414750..6418592) 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; multi-sensor signal transduction histidine kinase 6418592 10874086 Runsl_5529 Runella slithyformis DSM 19594 multi-sensor signal transduction histidine kinase YP_004658951.1 6414750 R 761193 CDS YP_004658952.1 338214887 10874088 complement(6419562..6420323) 1 NC_015703.1 PFAM: Metallo-beta-lactamase superfamily; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: sli:Slin_3276 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver protein; beta-lactamase 6420323 10874088 Runsl_5530 Runella slithyformis DSM 19594 beta-lactamase YP_004658952.1 6419562 R 761193 CDS YP_004658953.1 338214888 10874089 complement(6420399..6420776) 1 NC_015703.1 PFAM: Response regulator receiver domain; KEGG: rrs:RoseRS_2469 cell wall anchor domain-containing protein; SPTR: LPXTG-motif cell wall anchor domain; response regulator receiver protein 6420776 10874089 Runsl_5531 Runella slithyformis DSM 19594 response regulator receiver protein YP_004658953.1 6420399 R 761193 CDS YP_004658954.1 338214889 10874090 complement(6420988..6421824) 1 NC_015703.1 KEGG: ppn:Palpr_0817 TonB-dependent receptor plug; SPTR: OmpA-related protein; hypothetical protein 6421824 10874090 Runsl_5532 Runella slithyformis DSM 19594 hypothetical protein YP_004658954.1 6420988 R 761193 CDS YP_004658955.1 338214890 10874091 complement(6421863..6425225) 1 NC_015703.1 COGs: COG0313 methyltransferase; HAMAP: Ribosomal RNA small subunit methyltransferase I; InterPro IPR008189:IPR000878; KEGG: dfe:Dfer_4999 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; PFAM: Tetrapyrrole methylase; SPTR: Ribosomal RNA small subunit methyltransferase I; TIGRFAM: Uncharacterised protein family UPF0011; TonB-dependent receptor plug 6425225 10874091 Runsl_5533 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004658955.1 6421863 R 761193 CDS YP_004658956.1 338214891 10874092 6425600..6426274 1 NC_015703.1 PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family; KEGG: dfe:Dfer_4998 hypothetical protein; SPTR: uncharacterized protein; ribosomal RNA small subunit methyltransferase I 6426274 10874092 Runsl_5534 Runella slithyformis DSM 19594 ribosomal RNA small subunit methyltransferase I YP_004658956.1 6425600 D 761193 CDS YP_004658957.1 338214892 10874093 6426396..6427601 1 NC_015703.1 COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase; InterPro IPR000760; KEGG: dfe:Dfer_4997 inositol-phosphate phosphatase; PFAM: Inositol monophosphatase; SPTR: Inositol-phosphate phosphatase; hypothetical protein 6427601 10874093 Runsl_5535 Runella slithyformis DSM 19594 hypothetical protein YP_004658957.1 6426396 D 761193 CDS YP_004658958.1 338214893 10874094 6427662..6428510 1 NC_015703.1 PFAM: Inositol monophosphatase; COGs: COG3386 Gluconolactonase; InterPro IPR000801:IPR013658; KEGG: plm:Plim_2162 SMP-30/gluconolaconase/LRE domain protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; esterase; SPTR: SMP-30/Gluconolaconase/LRE domain protein; inositol monophosphatase 6428510 10874094 Runsl_5536 Runella slithyformis DSM 19594 inositol monophosphatase YP_004658958.1 6427662 D 761193 CDS YP_004658959.1 338214894 10874095 6428645..6430405 1 NC_015703.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; esterase; COGs: COG3182 Uncharacterized iron-regulated membrane protein; InterPro IPR005625; KEGG: sli:Slin_1573 PepSY-associated TM helix domain protein; PFAM: PepSY-associated TM helix; SPTR: PepSY-associated TM helix domain protein; SMP-30/gluconolaconase/LRE-like region-containing protein 6430405 10874095 Runsl_5537 Runella slithyformis DSM 19594 SMP-30/gluconolaconase/LRE-like region-containing protein YP_004658959.1 6428645 D 761193 CDS YP_004658960.1 338214895 10874096 6430618..6431694 1 NC_015703.1 PFAM: PepSY-associated TM helix; KEGG: sli:Slin_0961 hypothetical protein; SPTR: uncharacterized protein; PepSY-associated TM helix domain-containing protein 6431694 10874096 Runsl_5538 Runella slithyformis DSM 19594 PepSY-associated TM helix domain-containing protein YP_004658960.1 6430618 D 761193 CDS YP_004658961.1 338214896 10874097 complement(6431698..6433866) 1 NC_015703.1 PFAM: Planctomycete cytochrome C; InterPro IPR006311:IPR010869; KEGG: dfe:Dfer_1977 protein of unknown function DUF1501; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein; hypothetical protein 6433866 10874097 Runsl_5539 Runella slithyformis DSM 19594 hypothetical protein YP_004658961.1 6431698 R 761193 CDS YP_004658962.1 338214897 10874098 complement(6433947..6435401) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1501); InterPro IPR011429:IPR011444; KEGG: sli:Slin_0959 hypothetical protein; PFAM: Protein of unknown function DUF1549; Cytochrome C, Planctomycete; SPTR: uncharacterized protein; hypothetical protein 6435401 10874098 Runsl_5540 Runella slithyformis DSM 19594 hypothetical protein YP_004658962.1 6433947 R 761193 CDS YP_004658963.1 338214898 10874099 complement(6435423..6437756) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553); InterPro IPR006311:IPR010869; KEGG: sli:Slin_0958 hypothetical protein; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein; manually curated; hypothetical protein 6437756 10874099 Runsl_5541 Runella slithyformis DSM 19594 hypothetical protein YP_004658963.1 6435423 R 761193 CDS YP_004658964.1 338214899 10874100 complement(6437766..6439199) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1501); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; InterPro IPR011429:IPR011444; KEGG: sli:Slin_0957 hypothetical protein; PFAM: Protein of unknown function DUF1549; Cytochrome C, Planctomycete; SPTR: uncharacterized protein; hypothetical protein 6439199 10874100 Runsl_5542 Runella slithyformis DSM 19594 hypothetical protein YP_004658964.1 6437766 R 761193 CDS YP_004658965.1 338214900 10874101 complement(6439549..6441906) 1 NC_015703.1 PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553); InterPro IPR012944; KEGG: sli:Slin_0956 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; hypothetical protein 6441906 10874101 Runsl_5543 Runella slithyformis DSM 19594 hypothetical protein YP_004658965.1 6439549 R 761193 CDS YP_004658966.1 338214901 10874102 complement(6442059..6443561) 1 NC_015703.1 PFAM: SusD family; InterPro IPR012910:IPR000531; KEGG: sli:Slin_0955 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; RagB/SusD domain-containing protein 6443561 10874102 Runsl_5544 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004658966.1 6442059 R 761193 CDS YP_004658967.1 338214902 10874103 complement(6443574..6446642) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; KEGG: phe:Phep_3870 lipase; SPTR: uncharacterized protein; TonB-dependent receptor plug 6446642 10874103 Runsl_5545 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004658967.1 6443574 R 761193 CDS YP_004658968.1 338214903 10874104 complement(6447226..6447933) 1 NC_015703.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_4887 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; lipase 6447933 10874104 Runsl_5546 Runella slithyformis DSM 19594 lipase YP_004658968.1 6447226 R 761193 CDS YP_004658969.1 338214904 10874105 6448261..6448842 1 NC_015703.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: sli:Slin_4886 hypothetical protein; SPTR: uncharacterized protein; ECF subfamily RNA polymerase sigma-24 subunit 6448842 10874105 Runsl_5547 Runella slithyformis DSM 19594 ECF subfamily RNA polymerase sigma-24 subunit YP_004658969.1 6448261 D 761193 CDS YP_004658970.1 338214905 10874106 6448817..6450466 1 NC_015703.1 COGs: COG0158 Fructose-1 6-bisphosphatase; HAMAP: Fructose-1,6-bisphosphatase; InterPro IPR000146; KEGG: dfe:Dfer_4096 inositol phosphatase/fructose-16-bisphosphatase; PFAM: Fructose-1,6-bisphosphatase; PRIAM: Fructose-bisphosphatase; SPTR: Fructose-1,6-bisphosphatase class 1; hypothetical protein 6450466 10874106 Runsl_5548 Runella slithyformis DSM 19594 hypothetical protein YP_004658970.1 6448817 D 761193 CDS YP_004658971.1 338214906 10874107 complement(6450474..6451514) 1 NC_015703.1 PFAM: Fructose-1-6-bisphosphatase; COGs: COG3001 conserved hypothetical protein; InterPro IPR016477; KEGG: sli:Slin_5692 fructosamine/ketosamine-3-kinase; PFAM: Fructosamine/Ketosamine-3-kinase; SPTR: Fructosamine/Ketosamine-3-kinase; fructose-1,6-bisphosphatase class 1 6451514 10874107 Runsl_5549 Runella slithyformis DSM 19594 fructose-1,6-bisphosphatase class 1 YP_004658971.1 6450474 R 761193 CDS YP_004658972.1 338214907 10874108 complement(6451638..6452525) 1 NC_015703.1 PFAM: Fructosamine kinase; COGs: COG2377 molecular chaperone distantly related to HSP70-fold metalloprotease; HAMAP: Anhydro-N-acetylmuramic acid kinase; InterPro IPR005338; KEGG: sli:Slin_5693 hypothetical protein; PFAM: Anhydro-N-acetylmuramic acid kinase; SPTR: Anhydro-N-acetylmuramic acid kinase; fructosamine/Ketosamine-3-kinase 6452525 10874108 Runsl_5550 Runella slithyformis DSM 19594 fructosamine/Ketosamine-3-kinase YP_004658972.1 6451638 R 761193 CDS YP_004658973.1 338214908 10874109 6452585..6453781 1 NC_015703.1 PFAM: Uncharacterised protein family (UPF0075); InterPro IPR001478; KEGG: sli:Slin_5609 PDZ/DHR/GLGF domain protein; PFAM: PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; SPTR: PDZ/DHR/GLGF domain protein; anhydro-N-acetylmuramic acid kinase 6453781 10874109 Runsl_5551 Runella slithyformis DSM 19594 anhydro-N-acetylmuramic acid kinase YP_004658973.1 6452585 D 761193 CDS YP_004658974.1 338214909 10874110 complement(6453867..6455123) 1 NC_015703.1 PFAM: PDZ domain (Also known as DHR or GLGF); COGs: COG0149 Triosephosphate isomerase; InterPro IPR000652; KEGG: sli:Slin_5608 triosephosphate isomerase; PFAM: Triosephosphate isomerase; PRIAM: Triose-phosphate isomerase; SPTR: Triosephosphate isomerase; TIGRFAM: Triosephosphate isomerase; PDZ/DHR/GLGF domain-containing protein 6455123 10874110 Runsl_5552 Runella slithyformis DSM 19594 PDZ/DHR/GLGF domain-containing protein YP_004658974.1 6453867 R 761193 CDS YP_004658975.1 338214910 10874111 6455374..6456138 1 NC_015703.1 PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase; KEGG: sli:Slin_0764 hypothetical protein; SPTR: uncharacterized protein; triosephosphate isomerase 6456138 10874111 Runsl_5553 Runella slithyformis DSM 19594 triosephosphate isomerase YP_004658975.1 6455374 D 761193 CDS YP_004658976.1 338214911 10874112 6456293..6457390 1 NC_015703.1 COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: hmg:100202455 similar to Nitrilase homolog 1; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; hypothetical protein 6457390 10874112 Runsl_5554 Runella slithyformis DSM 19594 hypothetical protein YP_004658976.1 6456293 D 761193 CDS YP_004658977.1 338214912 10874113 complement(6457467..6458240) 1 NC_015703.1 PFAM: Carbon-nitrogen hydrolase; COGs: COG3540 Phosphodiesterase/alkaline phosphatase D; KEGG: sli:Slin_0226 phosphodiesterase/alkaline phosphatase D; SPTR: Phosphodiesterase/alkaline phosphatase D; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 6458240 10874113 Runsl_5555 Runella slithyformis DSM 19594 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004658977.1 6457467 R 761193 CDS YP_004658978.1 338214913 10874114 complement(6458267..6459580) 1 NC_015703.1 PFAM: PhoD-like phosphatase; InterPro IPR013216; KEGG: sli:Slin_3133 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; phosphodiesterase/alkaline phosphatase D 6459580 10874114 Runsl_5556 Runella slithyformis DSM 19594 phosphodiesterase/alkaline phosphatase D YP_004658978.1 6458267 R 761193 CDS YP_004658979.1 338214914 10874115 6459758..6460492 1 NC_015703.1 PFAM: Methyltransferase domain; COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR002986:IPR000183; KEGG: sli:Slin_0227 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; PRIAM: Diaminopimelate decarboxylase; SPTR: Diaminopimelate decarboxylase; TIGRFAM: Diaminopimelate decarboxylase; type 11 methyltransferase 6460492 10874115 Runsl_5557 Runella slithyformis DSM 19594 type 11 methyltransferase YP_004658979.1 6459758 D 761193 CDS YP_004658980.1 338214915 10874116 6460588..6461850 1 NC_015703.1 PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase; COGs: COG0217 conserved hypothetical protein; HAMAP: Protein of unknown function DUF28; InterPro IPR002876; KEGG: sli:Slin_0228 hypothetical protein; PFAM: Protein of unknown function DUF28; SPTR: UPF0082 protein Slin_0228; TIGRFAM: Protein of unknown function DUF28; diaminopimelate decarboxylase 6461850 10874116 Runsl_5558 Runella slithyformis DSM 19594 diaminopimelate decarboxylase YP_004658980.1 6460588 D 761193 CDS YP_004658981.1 338214916 10874117 6461875..6462588 1 NC_015703.1 PFAM: Domain of unknown function DUF28; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family; COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA dimethylallyltransferase; InterPro IPR018022:IPR002627; KEGG: sli:Slin_0297 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: tRNA dimethylallyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; hypothetical protein 6462588 10874117 Runsl_5559 Runella slithyformis DSM 19594 hypothetical protein YP_004658981.1 6461875 D 761193 CDS YP_004658982.1 338214917 10874118 complement(6462674..6463606) 1 NC_015703.1 PFAM: IPP transferase; TIGRFAM: tRNA dimethylallyltransferase; KEGG: phe:Phep_2286 hypothetical protein; SPTR: uncharacterized protein; tRNA dimethylallyltransferase 6463606 10874118 Runsl_5560 Runella slithyformis DSM 19594 tRNA dimethylallyltransferase YP_004658982.1 6462674 R 761193 CDS YP_004658983.1 338214918 10874119 complement(6463603..6464022) 1 NC_015703.1 KEGG: dfe:Dfer_2921 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6464022 10874119 Runsl_5561 Runella slithyformis DSM 19594 hypothetical protein YP_004658983.1 6463603 R 761193 CDS YP_004658984.1 338214919 10874120 6464195..6464872 1 NC_015703.1 hypothetical protein 6464872 10874120 Runsl_5562 Runella slithyformis DSM 19594 hypothetical protein YP_004658984.1 6464195 D 761193 CDS YP_004658985.1 338214920 10874121 complement(6465123..6465740) 1 NC_015703.1 COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR005790:IPR010372; KEGG: dfe:Dfer_1065 DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; SPTR: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; hypothetical protein 6465740 10874121 Runsl_5563 Runella slithyformis DSM 19594 hypothetical protein YP_004658985.1 6465123 R 761193 CDS YP_004658986.1 338214921 10874122 complement(6465983..6467005) 1 NC_015703.1 PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; KEGG: dfe:Dfer_4777 hypothetical protein; SPTR: uncharacterized protein; DNA polymerase III subunit delta 6467005 10874122 Runsl_5564 Runella slithyformis DSM 19594 DNA polymerase III subunit delta YP_004658986.1 6465983 R 761193 CDS YP_004658987.1 338214922 10874123 complement(6467095..6468393) 1 NC_015703.1 COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: sli:Slin_3374 peptidase U61 LD-carboxypeptidase A; PFAM: Peptidase S66, LD-carboxypeptidase A; SPTR: Peptidase U61 LD-carboxypeptidase A; hypothetical protein 6468393 10874123 Runsl_5565 Runella slithyformis DSM 19594 hypothetical protein YP_004658987.1 6467095 R 761193 CDS YP_004658988.1 338214923 10874124 6468491..6469516 1 NC_015703.1 PFAM: LD-carboxypeptidase; KEGG: sli:Slin_5539 hypothetical protein; SPTR: uncharacterized protein; peptidase U61 6469516 10874124 Runsl_5566 Runella slithyformis DSM 19594 peptidase U61 YP_004658988.1 6468491 D 761193 CDS YP_004658989.1 338214924 10874125 6469599..6470582 1 NC_015703.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593:IPR001140:IPR003439; KEGG: sli:Slin_5540 ABC transporter; PFAM: ABC transporter-like; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; hypothetical protein 6470582 10874125 Runsl_5567 Runella slithyformis DSM 19594 hypothetical protein YP_004658989.1 6469599 D 761193 CDS YP_004658990.1 338214925 10874126 6470658..6472466 1 NC_015703.1 PFAM: ABC transporter transmembrane region; ABC transporter; InterPro IPR007165; KEGG: dfe:Dfer_4241 membrane protein of unknown function; PFAM: Membrane protein of unknown function; SPTR: uncharacterized protein; xenobiotic-transporting ATPase 6472466 10874126 Runsl_5568 Runella slithyformis DSM 19594 xenobiotic-transporting ATPase YP_004658990.1 6470658 D 761193 CDS YP_004658991.1 338214926 10874127 6472562..6472900 1 NC_015703.1 PFAM: Membrane protein of unknown function; hypothetical protein 6472900 10874127 Runsl_5569 Runella slithyformis DSM 19594 hypothetical protein YP_004658991.1 6472562 D 761193 CDS YP_004658992.1 338214927 10874128 6472937..6473278 1 NC_015703.1 KEGG: sli:Slin_2304 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6473278 10874128 Runsl_5570 Runella slithyformis DSM 19594 hypothetical protein YP_004658992.1 6472937 D 761193 CDS YP_004658993.1 338214928 10874129 complement(6473200..6473736) 1 NC_015703.1 KEGG: sli:Slin_1067 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6473736 10874129 Runsl_5571 Runella slithyformis DSM 19594 hypothetical protein YP_004658993.1 6473200 R 761193 CDS YP_004658994.1 338214929 10874130 complement(6474126..6474662) 1 NC_015703.1 COGs: COG4757 alpha/beta hydrolase; KEGG: swp:swp_1822 alpha/beta hydrolase; SPTR: Alpha/beta hydrolase; hypothetical protein 6474662 10874130 Runsl_5572 Runella slithyformis DSM 19594 hypothetical protein YP_004658994.1 6474126 R 761193 CDS YP_004658995.1 338214930 10874131 complement(6474668..6475621) 1 NC_015703.1 InterPro IPR001647; KEGG: pau:PA14_48190 transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulatory protein, TetR family; alpha/beta hydrolase 6475621 10874131 Runsl_5573 Runella slithyformis DSM 19594 alpha/beta hydrolase YP_004658995.1 6474668 R 761193 CDS YP_004658996.1 338214931 10874132 complement(6475602..6476174) 1 NC_015703.1 PFAM: Bacterial regulatory proteins, tetR family; COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: sli:Slin_5037 amidohydrolase; PFAM: Amidohydrolase 1; SPTR: Amidohydrolase; TetR family transcriptional regulator 6476174 10874132 Runsl_5574 Runella slithyformis DSM 19594 TetR family transcriptional regulator YP_004658996.1 6475602 R 761193 CDS YP_004658997.1 338214932 10874133 6476206..6477651 1 NC_015703.1 PFAM: Amidohydrolase; COGs: COG0372 Citrate synthase; InterPro IPR010953:IPR002020; KEGG: sli:Slin_5036 citrate synthase I; PFAM: Citrate synthase-like; PRIAM: Citrate (Si)-synthase; SPTR: Citrate synthase; TIGRFAM: Citrate synthase, type II; amidohydrolase 6477651 10874133 Runsl_5575 Runella slithyformis DSM 19594 amidohydrolase YP_004658997.1 6476206 D 761193 CDS YP_004658998.1 338214933 10874134 6477843..6479129 1 NC_015703.1 PFAM: Citrate synthase; TIGRFAM: citrate synthase I (hexameric type); InterPro IPR005181:IPR003961; KEGG: dfe:Dfer_3958 fibronectin type III domain protein; PFAM: Protein of unknown function DUF303, acetylesterase ; Fibronectin, type III; SPTR: Fibronectin type III domain protein; citrate synthase I 6479129 10874134 Runsl_5576 Runella slithyformis DSM 19594 citrate synthase I YP_004658998.1 6477843 D 761193 CDS YP_004658999.1 338214934 10874135 6479426..6481414 1 NC_015703.1 PFAM: Domain of unknown function (DUF303); COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR010168:IPR002933:IPR011650; KEGG: sli:Slin_0207 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: N-acetyldiaminopimelate deacetylase; SPTR: Amidohydrolase; TIGRFAM: Peptidase M20D, amidohydrolase; hypothetical protein 6481414 10874135 Runsl_5577 Runella slithyformis DSM 19594 hypothetical protein YP_004658999.1 6479426 D 761193 CDS YP_004659000.1 338214935 10874136 complement(6481649..6482992) 1 NC_015703.1 PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase; COGs: COG0131 Imidazoleglycerol-phosphate dehydratase; HAMAP: Imidazoleglycerol-phosphate dehydratase; InterPro IPR000807:IPR005954:IPR006543; KEGG: dfe:Dfer_2927 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; PFAM: Imidazoleglycerol-phosphate dehydratase; PRIAM: Histidinol-phosphatase; SPTR: Histidinol-phosphatase; TIGRFAM: Histidinol-phosphatase; Histidinol-phosphate phosphatase; amidohydrolase 6482992 10874136 Runsl_5578 Runella slithyformis DSM 19594 amidohydrolase YP_004659000.1 6481649 R 761193 CDS YP_004659001.1 338214936 10874137 6483086..6484207 1 NC_015703.1 PFAM: Imidazoleglycerol-phosphate dehydratase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; histidinol-phosphate phosphatase domain; histidinol-phosphatase; imidazoleglycerol-phosphate dehydratase 6484207 10874137 Runsl_5579 Runella slithyformis DSM 19594 imidazoleglycerol-phosphate dehydratase YP_004659001.1 6483086 D 761193 CDS YP_004659002.1 338214937 10874138 6484306..6484425 1 NC_015703.1 KEGG: plt:Plut_0531 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6484425 10874138 Runsl_5580 Runella slithyformis DSM 19594 hypothetical protein YP_004659002.1 6484306 D 761193 CDS YP_004659003.1 338214938 10874139 6484550..6484936 1 NC_015703.1 PFAM: Protein of unknown function (DUF3127); COGs: COG1626 Neutral trehalase; InterPro IPR001661; KEGG: cja:CJA_0284 trehalase, , tre37A; PFAM: Glycoside hydrolase, family 37; PRIAM: Alpha,alpha-trehalase; SPTR: Trehalase, , tre37A; hypothetical protein 6484936 10874139 Runsl_5581 Runella slithyformis DSM 19594 hypothetical protein YP_004659003.1 6484550 D 761193 CDS YP_004659004.1 338214939 10874140 complement(6485029..6486558) 1 NC_015703.1 PFAM: Trehalase; COGs: COG0738 Fucose permease; InterPro IPR011701; KEGG: psm:PSM_B0242 hypothetical protein; PFAM: Major facilitator superfamily MFS-1; SPTR: uncharacterized protein; alpha,alpha-trehalase 6486558 10874140 Runsl_5582 Runella slithyformis DSM 19594 alpha,alpha-trehalase YP_004659004.1 6485029 R 761193 CDS YP_004659005.1 338214940 10874141 complement(6486597..6487853) 1 NC_015703.1 PFAM: Major Facilitator Superfamily; major facilitator superfamily protein 6487853 10874141 Runsl_5583 Runella slithyformis DSM 19594 major facilitator superfamily protein YP_004659005.1 6486597 R 761193 CDS YP_004659006.1 338214941 10874142 complement(6487897..6488043) 1 NC_015703.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: lby:Lbys_2314 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; hypothetical protein 6488043 10874142 Runsl_5584 Runella slithyformis DSM 19594 hypothetical protein YP_004659006.1 6487897 R 761193 CDS YP_004659007.1 338214942 10874143 6488104..6488955 1 NC_015703.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG0516 IMP dehydrogenase/GMP reductase; InterPro IPR005990:IPR000644:IPR001093; KEGG: sli:Slin_1193 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core; PRIAM: IMP dehydrogenase; SMART: Cystathionine beta-synthase, core; SPTR: Inosine-5'-monophosphate dehydrogenase; TIGRFAM: IMP dehydrogenase; AraC family transcriptional regulator 6488955 10874143 Runsl_5585 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004659007.1 6488104 D 761193 CDS YP_004659008.1 338214943 10874144 complement(6489050..6490522) 1 NC_015703.1 PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase; COGs: COG0162 Tyrosyl-tRNA synthetase; HAMAP: Tyrosyl-tRNA synthetase; InterPro IPR002307:IPR002305; KEGG: sli:Slin_1102 tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; PRIAM: Tyrosine--tRNA ligase; SPTR: Tyrosyl-tRNA synthetase; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; manually curated; inosine-5'-monophosphate dehydrogenase 6490522 10874144 Runsl_5586 Runella slithyformis DSM 19594 inosine-5'-monophosphate dehydrogenase YP_004659008.1 6489050 R 761193 CDS YP_004659009.1 338214944 10874145 6490734..6492035 1 NC_015703.1 PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase; COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR000394:IPR007046:IPR007634; KEGG: sli:Slin_0631 RNA polymerase, sigma 54 subunit, RpoN; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54; SPTR: RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma factor 54; tyrosyl-tRNA synthetase 6492035 10874145 Runsl_5587 Runella slithyformis DSM 19594 tyrosyl-tRNA synthetase YP_004659009.1 6490734 D 761193 CDS YP_004659010.1 338214945 10874146 6492260..6493717 1 NC_015703.1 PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor; KEGG: sli:Slin_0630 hypothetical protein; SPTR: uncharacterized protein; RNA polymerase sigma 54 subunit RpoN 6493717 10874146 Runsl_5588 Runella slithyformis DSM 19594 RNA polymerase sigma 54 subunit RpoN YP_004659010.1 6492260 D 761193 CDS YP_004659011.1 338214946 10874147 6493820..6494458 1 NC_015703.1 COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: sli:Slin_0629 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR: Enoyl-CoA hydratase/isomerase; hypothetical protein 6494458 10874147 Runsl_5589 Runella slithyformis DSM 19594 hypothetical protein YP_004659011.1 6493820 D 761193 CDS YP_004659012.1 338214947 10874148 6494518..6495300 1 NC_015703.1 PFAM: Enoyl-CoA hydratase/isomerase; InterPro IPR007138; KEGG: sli:Slin_4551 antibiotic biosynthesis monooxygenase; PFAM: Antibiotic biosynthesis monooxygenase; SPTR: Antibiotic biosynthesis monooxygenase; enoyl-CoA hydratase 6495300 10874148 Runsl_5590 Runella slithyformis DSM 19594 enoyl-CoA hydratase YP_004659012.1 6494518 D 761193 CDS YP_004659013.1 338214948 10874149 6495385..6495678 1 NC_015703.1 PFAM: Antibiotic biosynthesis monooxygenase; COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: sli:Slin_0539 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein; antibiotic biosynthesis monooxygenase 6495678 10874149 Runsl_5591 Runella slithyformis DSM 19594 antibiotic biosynthesis monooxygenase YP_004659013.1 6495385 D 761193 CDS YP_004659014.1 338214949 10874150 complement(6495682..6496200) 1 NC_015703.1 PFAM: Thioesterase superfamily; KEGG: dfe:Dfer_3667 hypothetical protein; SPTR: uncharacterized protein; thioesterase 6496200 10874150 Runsl_5592 Runella slithyformis DSM 19594 thioesterase YP_004659014.1 6495682 R 761193 CDS YP_004659015.1 338214950 10874151 6496407..6496706 1 NC_015703.1 COGs: COG0249 Mismatch repair ATPase (MutS family); InterPro IPR000432; KEGG: sli:Slin_5542 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; SPTR: DNA mismatch repair protein MutS domain protein; hypothetical protein 6496706 10874151 Runsl_5593 Runella slithyformis DSM 19594 hypothetical protein YP_004659015.1 6496407 D 761193 CDS YP_004659016.1 338214951 10874152 6496772..6498559 1 NC_015703.1 PFAM: MutS domain V; MutS domain III; COGs: COG0597 Lipoprotein signal peptidase; HAMAP: Peptidase A8, signal peptidase II; InterPro IPR001872; KEGG: dfe:Dfer_1207 lipoprotein signal peptidase; PFAM: Peptidase A8, signal peptidase II; SPTR: Lipoprotein signal peptidase 1; TIGRFAM: Peptidase A8, signal peptidase II; DNA mismatch repair protein MutS domain-containing protein 6498559 10874152 Runsl_5594 Runella slithyformis DSM 19594 DNA mismatch repair protein MutS domain-containing protein YP_004659016.1 6496772 D 761193 CDS YP_004659017.1 338214952 10874153 6498633..6499151 1 NC_015703.1 PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase; COGs: COG0326 Molecular chaperone HSP90 family; InterPro IPR003594:IPR020576; KEGG: dfe:Dfer_5199 heat shock protein 90; PFAM: Heat shock protein Hsp90, C-terminal; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: ATP-binding region ATPase domain protein; lipoprotein signal peptidase 6499151 10874153 Runsl_5595 Runella slithyformis DSM 19594 lipoprotein signal peptidase YP_004659017.1 6498633 D 761193 CDS YP_004659018.1 338214953 10874154 6499335..6501197 1 NC_015703.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Hsp90 protein; Heat shock protein Hsp90 6501197 10874154 Runsl_5596 Runella slithyformis DSM 19594 Heat shock protein Hsp90 YP_004659018.1 6499335 D 761193 CDS YP_004659019.1 338214954 10874155 complement(6501245..6501733) 1 NC_015703.1 InterPro IPR003961:IPR001590; KEGG: fba:FIC_00814 hypothetical protein; PFAM: Peptidase M12B, ADAM/reprolysin; Fibronectin, type III; SMART: Fibronectin, type III; SPTR: uncharacterized protein; hypothetical protein 6501733 10874155 Runsl_5597 Runella slithyformis DSM 19594 hypothetical protein YP_004659019.1 6501245 R 761193 CDS YP_004659020.1 338214955 10874156 6501841..6505833 1 NC_015703.1 PFAM: Reprolysin (M12B) family zinc metalloprotease; Fibronectin type III domain; InterPro IPR000182; KEGG: fbc:FB2170_13021 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: uncharacterized protein; peptidase M12B ADAM/reprolysin 6505833 10874156 Runsl_5598 Runella slithyformis DSM 19594 peptidase M12B ADAM/reprolysin YP_004659020.1 6501841 D 761193 CDS YP_004659021.1 338214956 10874157 complement(6505881..6506333) 1 NC_015703.1 PFAM: Acetyltransferase (GNAT) family; COGs: COG1018 Flavodoxin reductase (ferredoxin-NADPH reductase) family 1; InterPro IPR008333:IPR001433:IPR001041; KEGG: sli:Slin_5188 oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: Ferredoxin; Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region; PRIAM: Nitric oxide dioxygenase; SPTR: Oxidoreductase FAD/NAD(P)-binding domain protein; N-acetyltransferase GCN5 6506333 10874157 Runsl_5599 Runella slithyformis DSM 19594 N-acetyltransferase GCN5 YP_004659021.1 6505881 R 761193 CDS YP_004659022.1 338214957 10874158 complement(6506477..6507541) 1 NC_015703.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; COGs: COG0316 conserved hypothetical protein; InterPro IPR016092:IPR000361; KEGG: dfe:Dfer_3150 iron-sulfur cluster assembly accessory protein; PFAM: FeS cluster biogenesis; SPTR: Iron-sulfur cluster assembly accessory protein; TIGRFAM: FeS cluster insertion; nitric oxide dioxygenase 6507541 10874158 Runsl_5600 Runella slithyformis DSM 19594 nitric oxide dioxygenase YP_004659022.1 6506477 R 761193 CDS YP_004659023.1 338214958 10874159 6507721..6508047 1 NC_015703.1 PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein; COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094:IPR007173; KEGG: sli:Slin_6373 FAD linked oxidase; PFAM: FAD linked oxidase, N-terminal; D-arabinono-1,4-lactone oxidase; PRIAM: Alditol oxidase; SPTR: FAD linked oxidase domain protein; iron-sulfur cluster assembly accessory protein 6508047 10874159 Runsl_5601 Runella slithyformis DSM 19594 iron-sulfur cluster assembly accessory protein YP_004659023.1 6507721 D 761193 CDS YP_004659024.1 338214959 10874160 complement(6508195..6509538) 1 NC_015703.1 PFAM: D-arabinono-1,4-lactone oxidase; FAD binding domain; InterPro IPR010496; KEGG: dfe:Dfer_0295 protein of unknown function DUF1080; PFAM: Protein of unknown function DUF1080; SPTR: uncharacterized protein; alditol oxidase 6509538 10874160 Runsl_5602 Runella slithyformis DSM 19594 alditol oxidase YP_004659024.1 6508195 R 761193 CDS YP_004659025.1 338214960 10874161 complement(6509558..6510199) 1 NC_015703.1 PFAM: Domain of Unknown Function (DUF1080); hypothetical protein 6510199 10874161 Runsl_5603 Runella slithyformis DSM 19594 hypothetical protein YP_004659025.1 6509558 R 761193 CDS YP_004659026.1 338214961 10874162 6510365..6510622 1 NC_015703.1 COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: sli:Slin_0241 cobyrinic acid ac-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Cobyrinic acid ac-diamide synthase; hypothetical protein 6510622 10874162 Runsl_5604 Runella slithyformis DSM 19594 hypothetical protein YP_004659026.1 6510365 D 761193 CDS YP_004659027.1 338214962 10874163 6510622..6511446 1 NC_015703.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; COGs: COG1475 transcriptional regulator protein; InterPro IPR004437:IPR003115; KEGG: sli:Slin_0242 ParB-like partition protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; SPTR: ParB-like partition protein; TIGRFAM: ParB-like partition protein; Cobyrinic acid ac-diamide synthase 6511446 10874163 Runsl_5605 Runella slithyformis DSM 19594 Cobyrinic acid ac-diamide synthase YP_004659027.1 6510622 D 761193 CDS YP_004659028.1 338214963 10874164 6511548..6512468 1 NC_015703.1 PFAM: ParB-like nuclease domain; KorB domain; TIGRFAM: ParB-like partition proteins; KEGG: sli:Slin_0243 hypothetical protein; SPTR: uncharacterized protein; parB-like partition protein 6512468 10874164 Runsl_5606 Runella slithyformis DSM 19594 parB-like partition protein YP_004659028.1 6511548 D 761193 CDS YP_004659029.1 338214964 10874165 6512522..6513154 1 NC_015703.1 COGs: COG0289 Dihydrodipicolinate reductase; InterPro IPR011770:IPR000846; KEGG: sli:Slin_0244 dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase; PRIAM: Dihydrodipicolinate reductase; SPTR: Dihydrodipicolinate reductase; TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; hypothetical protein 6513154 10874165 Runsl_5607 Runella slithyformis DSM 19594 hypothetical protein YP_004659029.1 6512522 D 761193 CDS YP_004659030.1 338214965 10874166 6513213..6513932 1 NC_015703.1 PFAM: Dihydrodipicolinate reductase, N-terminus; Dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase; COGs: COG0681 Signal peptidase I; InterPro IPR000223:IPR019759; KEGG: dfe:Dfer_0210 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: Signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; dihydrodipicolinate reductase 6513932 10874166 Runsl_5608 Runella slithyformis DSM 19594 dihydrodipicolinate reductase YP_004659030.1 6513213 D 761193 CDS YP_004659031.1 338214966 10874167 6513973..6515112 1 NC_015703.1 PFAM: Peptidase S26; Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type; KEGG: sli:Slin_1574 glycosyl hydrolase, BNR repeat-containing protein; SPTR: Glycosyl hydrolase, BNR repeat-containing protein; signal peptidase I 6515112 10874167 Runsl_5609 Runella slithyformis DSM 19594 signal peptidase I YP_004659031.1 6513973 D 761193 CDS YP_004659032.1 338214967 10874168 complement(6515314..6518277) 1 NC_015703.1 PFAM: BNR/Asp-box repeat; glycoside hydrolase 6518277 10874168 Runsl_5610 Runella slithyformis DSM 19594 glycoside hydrolase YP_004659032.1 6515314 R 761193 CDS YP_004659033.1 338214968 10874169 6518317..6518538 1 NC_015703.1 hypothetical protein 6518538 10874169 Runsl_5611 Runella slithyformis DSM 19594 hypothetical protein YP_004659033.1 6518317 D 761193 CDS YP_004659034.1 338214969 10874170 6518901..6519044 1 NC_015703.1 hypothetical protein 6519044 10874170 Runsl_5612 Runella slithyformis DSM 19594 hypothetical protein YP_004659034.1 6518901 D 761193 CDS YP_004659035.1 338214970 10874171 complement(6519288..6519425) 1 NC_015703.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR011659:IPR002469:IPR001375; KEGG: sli:Slin_2851 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein; hypothetical protein 6519425 10874171 Runsl_5613 Runella slithyformis DSM 19594 hypothetical protein YP_004659035.1 6519288 R 761193 CDS YP_004659036.1 338214971 10874172 complement(6520000..6522357) 1 NC_015703.1 PFAM: Prolyl oligopeptidase; WD40-like Beta Propeller Repeat; Dipeptidyl peptidase IV (DPP IV) N-terminal region; COGs: COG0427 Acetyl-CoA hydrolase; InterPro IPR003702; KEGG: fba:FIC_00447 4-hydroxybutyrate coenzyme A transferase; PFAM: Acetyl-CoA hydrolase/transferase; SPTR: 4-hydroxybutyrate coenzyme A transferase; peptidase S9 prolyl oligopeptidase active site domain-containing protein 6522357 10874172 Runsl_5614 Runella slithyformis DSM 19594 peptidase S9 prolyl oligopeptidase active site domain-containing protein YP_004659036.1 6520000 R 761193 CDS YP_004659037.1 338214972 10874173 6522548..6523861 1 NC_015703.1 PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro IPR012577; KEGG: sli:Slin_4035 NIPSNAP family containing protein; PFAM: NIPSNAP; SPTR: NIPSNAP family containing protein; acetyl-CoA hydrolase/transferase 6523861 10874173 Runsl_5615 Runella slithyformis DSM 19594 acetyl-CoA hydrolase/transferase YP_004659037.1 6522548 D 761193 CDS YP_004659038.1 338214973 10874174 complement(6523928..6524719) 1 NC_015703.1 PFAM: NIPSNAP; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: dfe:Dfer_1416 transcriptional regulator, HxlR family; PFAM: Helix-turn-helix, HxlR type; SPTR: Transcriptional regulator, HxlR family; NIPSNAP family containing protein 6524719 10874174 Runsl_5616 Runella slithyformis DSM 19594 NIPSNAP family containing protein YP_004659038.1 6523928 R 761193 CDS YP_004659039.1 338214974 10874175 complement(6524867..6525223) 1 NC_015703.1 PFAM: HxlR-like helix-turn-helix; COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: shg:Sph21_2760 NADP-dependent oxidoreductase domain; PFAM: Aldo/keto reductase; SPTR: Aldo/keto reductase; HxlR family transcriptional regulator 6525223 10874175 Runsl_5617 Runella slithyformis DSM 19594 HxlR family transcriptional regulator YP_004659039.1 6524867 R 761193 CDS YP_004659040.1 338214975 10874176 6525381..6526394 1 NC_015703.1 PFAM: Aldo/keto reductase; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR012938; KEGG: dfe:Dfer_4807 glucose sorbosone dehydrogenase; SPTR: Glucose sorbosone dehydrogenase; aldo/keto reductase 6526394 10874176 Runsl_5618 Runella slithyformis DSM 19594 aldo/keto reductase YP_004659040.1 6525381 D 761193 CDS YP_004659041.1 338214976 10874177 6526462..6527643 1 NC_015703.1 PFAM: Glucose / Sorbosone dehydrogenase; Membrane bound L-sorbosone dehydrogenase; InterPro IPR003088; KEGG: dfe:Dfer_4806 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I; glucose sorbosone dehydrogenase 6527643 10874177 Runsl_5619 Runella slithyformis DSM 19594 glucose sorbosone dehydrogenase YP_004659041.1 6526462 D 761193 CDS YP_004659042.1 338214977 10874178 6527741..6528151 1 NC_015703.1 PFAM: Cytochrome c; KEGG: bra:BRADO3484 hypothetical protein; SPTR: uncharacterized protein; cytochrome c class I 6528151 10874178 Runsl_5620 Runella slithyformis DSM 19594 cytochrome c class I YP_004659042.1 6527741 D 761193 CDS YP_004659043.1 338214978 10874179 6528260..6529825 1 NC_015703.1 COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; InterPro IPR000192; KEGG: sli:Slin_2434 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; SPTR: Aminotransferase class V; hypothetical protein 6529825 10874179 Runsl_5621 Runella slithyformis DSM 19594 hypothetical protein YP_004659043.1 6528260 D 761193 CDS YP_004659044.1 338214979 10874180 complement(6529875..6530963) 1 NC_015703.1 PFAM: Aminotransferase class-V; TIGRFAM: phosphoserine aminotransferase, KEGG: cqu:CpipJ_CPIJ012362 hypothetical protein; SPTR: uncharacterized protein; class V aminotransferase 6530963 10874180 Runsl_5622 Runella slithyformis DSM 19594 class V aminotransferase YP_004659044.1 6529875 R 761193 CDS YP_004659045.1 338214980 10874181 6531182..6531946 1 NC_015703.1 KEGG: fjo:Fjoh_0717 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6531946 10874181 Runsl_5623 Runella slithyformis DSM 19594 hypothetical protein YP_004659045.1 6531182 D 761193 CDS YP_004659046.1 338214981 10874182 complement(6531907..6532260) 1 NC_015703.1 PFAM: S23 ribosomal protein; TIGRFAM: TIGR02436 family protein; COGs: COG0757 3-dehydroquinate dehydratase II; HAMAP: Dehydroquinase, class II; InterPro IPR001874; KEGG: dfe:Dfer_2796 3-dehydroquinate dehydratase, type II; PFAM: Dehydroquinase, class II; PRIAM: 3-dehydroquinate dehydratase; SPTR: 3-dehydroquinate dehydratase, type II; TIGRFAM: Dehydroquinase, class II; hypothetical protein 6532260 10874182 Runsl_5624 Runella slithyformis DSM 19594 hypothetical protein YP_004659046.1 6531907 R 761193 CDS YP_004659047.1 338214982 10874183 complement(6532469..6532900) 1 NC_015703.1 PFAM: Dehydroquinase class II; TIGRFAM: 3-dehydroquinate dehydratase, type II; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: mtt:Ftrac_1898 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; 3-dehydroquinate dehydratase 6532900 10874183 Runsl_5625 Runella slithyformis DSM 19594 3-dehydroquinate dehydratase YP_004659047.1 6532469 R 761193 CDS YP_004659048.1 338214983 10874184 complement(6533024..6536131) 1 NC_015703.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: phe:Phep_3735 RND family efflux transporter MFP subunit; PFAM: Secretion protein HlyD; SPTR: Cation or acridine efflux membrane fusion protein; TIGRFAM: Secretion protein HlyD; acriflavin resistance protein 6536131 10874184 Runsl_5626 Runella slithyformis DSM 19594 acriflavin resistance protein YP_004659048.1 6533024 R 761193 CDS YP_004659049.1 338214984 10874185 complement(6536165..6537292) 1 NC_015703.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; RND family efflux transporter MFP subunit 6537292 10874185 Runsl_5627 Runella slithyformis DSM 19594 RND family efflux transporter MFP subunit YP_004659049.1 6536165 R 761193 CDS YP_004659050.1 338214985 10874186 6538306..6538485 1 NC_015703.1 KEGG: shg:Sph21_1774 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6538485 10874186 Runsl_5628 Runella slithyformis DSM 19594 hypothetical protein YP_004659050.1 6538306 D 761193 CDS YP_004659051.1 338214986 10874187 complement(6538563..6539039) 1 NC_015703.1 InterPro IPR012944; KEGG: shg:Sph21_1775 RagB/SusD domain-containing protein; PFAM: RagB/SusD; SPTR: Outer membrane protein; hypothetical protein 6539039 10874187 Runsl_5629 Runella slithyformis DSM 19594 hypothetical protein YP_004659051.1 6538563 R 761193 CDS YP_004659052.1 338214987 10874188 complement(6539090..6540553) 1 NC_015703.1 PFAM: SusD family; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: shg:Sph21_1776 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; RagB/SusD domain-containing protein 6540553 10874188 Runsl_5630 Runella slithyformis DSM 19594 RagB/SusD domain-containing protein YP_004659052.1 6539090 R 761193 CDS YP_004659053.1 338214988 10874189 complement(6540605..6543727) 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG3857 ATP-dependent nuclease subunit B; KEGG: dfe:Dfer_2374 hypothetical protein; SPTR: uncharacterized protein; TonB-dependent receptor plug 6543727 10874189 Runsl_5631 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004659053.1 6540605 R 761193 CDS YP_004659054.1 338214989 10874190 6543944..6546997 1 NC_015703.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: phe:Phep_3159 response regulator receiver; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver; hypothetical protein 6546997 10874190 Runsl_5632 Runella slithyformis DSM 19594 hypothetical protein YP_004659054.1 6543944 D 761193 CDS YP_004659055.1 338214990 10874191 complement(6547057..6547794) 1 NC_015703.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 regulator of cell autolysis; InterPro IPR010559:IPR003594; KEGG: shg:Sph21_2097 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; ATP-binding region, ATPase-like; SPTR: Histidine kinase; LytTR family two component transcriptional regulator 6547794 10874191 Runsl_5633 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004659055.1 6547057 R 761193 CDS YP_004659056.1 338214991 10874192 complement(6547815..6548909) 1 NC_015703.1 PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR008454:IPR012910:IPR000531; KEGG: dfe:Dfer_0346 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Collagen-binding surface protein Cna-like, B region; SPTR: TonB-dependent receptor domain protein; signal transduction histidine kinase 6548909 10874192 Runsl_5634 Runella slithyformis DSM 19594 signal transduction histidine kinase YP_004659056.1 6547815 R 761193 CDS YP_004659057.1 338214992 10874193 6549114..6551543 1 NC_015703.1 PFAM: TonB-dependent Receptor Plug Domain; InterPro IPR000834; KEGG: sli:Slin_2367 peptidase M14, carboxypeptidase A; PFAM: Peptidase M14, carboxypeptidase A; SPTR: Peptidase M14, carboxypeptidase A; TonB-dependent receptor 6551543 10874193 Runsl_5635 Runella slithyformis DSM 19594 TonB-dependent receptor YP_004659057.1 6549114 D 761193 CDS YP_004659058.1 338214993 10874194 6551796..6553493 1 NC_015703.1 PFAM: Zinc carboxypeptidase; peptidase M14 carboxypeptidase A 6553493 10874194 Runsl_5636 Runella slithyformis DSM 19594 peptidase M14 carboxypeptidase A YP_004659058.1 6551796 D 761193 CDS YP_004659059.1 338214994 10874195 complement(6553423..6553563) 1 NC_015703.1 COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR000212; KEGG: dfe:Dfer_1136 UvrD/REP helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: UvrD/REP helicase; hypothetical protein 6553563 10874195 Runsl_5637 Runella slithyformis DSM 19594 hypothetical protein YP_004659059.1 6553423 R 761193 CDS YP_004659060.1 338214995 10874196 complement(6553671..6557054) 1 NC_015703.1 PFAM: UvrD/REP helicase; Prodigal; manually curated; UvrD/REP helicase 6557054 10874196 Runsl_5638 Runella slithyformis DSM 19594 UvrD/REP helicase YP_004659060.1 6553671 R 761193 CDS YP_004659061.1 338214996 10874198 6557821..6559602 1 NC_015703.1 PFAM: ABC transporter transmembrane region; ABC transporter; InterPro IPR000551; KEGG: sli:Slin_2379 MerR family transcriptional regulator; SMART: HTH transcriptional regulator, MerR; SPTR: Transcriptional regulator, MerR family; xenobiotic-transporting ATPase 6559602 10874198 Runsl_5640 Runella slithyformis DSM 19594 xenobiotic-transporting ATPase YP_004659061.1 6557821 D 761193 CDS YP_004659062.1 338214997 10874199 6559643..6559969 1 NC_015703.1 regulatory protein MerR 6559969 10874199 Runsl_5641 Runella slithyformis DSM 19594 regulatory protein MerR YP_004659062.1 6559643 D 761193 CDS YP_004659063.1 338214998 10874200 6559978..6561960 1 NC_015703.1 COGs: COG0207 Thymidylate synthase; HAMAP: Thymidylate synthase; InterPro IPR000398; KEGG: sli:Slin_2832 thymidylate synthase; PFAM: Thymidylate synthase, C-terminal; PRIAM: Thymidylate synthase; SPTR: Thymidylate synthase; TIGRFAM: Thymidylate synthase, C-terminal; hypothetical protein 6561960 10874200 Runsl_5642 Runella slithyformis DSM 19594 hypothetical protein YP_004659063.1 6559978 D 761193 CDS YP_004659064.1 338214999 10874201 complement(6561962..6562756) 1 NC_015703.1 PFAM: Thymidylate synthase; TIGRFAM: thymidylate synthase; SPTR: uncharacterized protein; thymidylate synthase 6562756 10874201 Runsl_5643 Runella slithyformis DSM 19594 thymidylate synthase YP_004659064.1 6561962 R 761193 CDS YP_004659065.1 338215000 10874202 complement(6562848..6563468) 1 NC_015703.1 TIGRFAM: TIGR02646 family protein; COGs: COG3950 ATP-binding protein involved in virulence; KEGG: sil:SPOA0124 hypothetical protein; SPTR: uncharacterized protein; hypothetical protein 6563468 10874202 Runsl_5644 Runella slithyformis DSM 19594 hypothetical protein YP_004659065.1 6562848 R 761193 CDS YP_004659066.1 338215001 10874203 complement(6563465..6564787) 1 NC_015703.1 COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006098:IPR006159:IPR006099:IPR006158; KEGG: sli:Slin_6640 methylmalonyl-CoA mutase, large subunit; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding; PRIAM: Methylmalonyl-CoA mutase; SPTR: Methylmalonyl-CoA mutase, large subunit; TIGRFAM: Methylmalonyl-CoA mutase, alpha chain, catalytic; Methylmalonyl-CoA mutase, C-terminal; hypothetical protein 6564787 10874203 Runsl_5645 Runella slithyformis DSM 19594 hypothetical protein YP_004659066.1 6563465 R 761193 CDS YP_004659067.1 338215002 10874204 complement(6564927..6567065) 1 NC_015703.1 PFAM: Methylmalonyl-CoA mutase; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase C-terminal domain; COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006099; KEGG: sli:Slin_6641 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; PRIAM: Methylmalonyl-CoA mutase; SPTR: Methylmalonyl-CoA mutase; methylmalonyl-CoA mutase large subunit 6567065 10874204 Runsl_5646 Runella slithyformis DSM 19594 methylmalonyl-CoA mutase large subunit YP_004659067.1 6564927 R 761193 CDS YP_004659068.1 338215003 10874205 complement(6567122..6568498) 1 NC_015703.1 PFAM: Methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase, heterodimeric type, beta chain; Signal predicted by SignalP 3.0 HMM; IMG reference gene:2505789240_SP; methylmalonyl-CoA mutase 6568498 10874205 Runsl_5647 Runella slithyformis DSM 19594 methylmalonyl-CoA mutase YP_004659068.1 6567122 R 761193 CDS YP_004659069.1 338215080 10868509 complement(58..498) 1 NC_015704.1 SPTR: Putative uncharacterized protein; hypothetical protein 498 10868509 Runsl_5884 Runella slithyformis DSM 19594 hypothetical protein YP_004659069.1 58 R 761193 CDS YP_004659070.1 338215081 10868419 complement(502..771) 1 NC_015704.1 COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: sli:Slin_6996 ATPase-like protein involved in chromosome partitioning; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Cobyrinic acid ac-diamide synthase; hypothetical protein 771 10868419 Runsl_5885 Runella slithyformis DSM 19594 hypothetical protein YP_004659070.1 502 R 761193 CDS YP_004659071.1 338215082 10868420 complement(786..1382) 1 NC_015704.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; Cobyrinic acid ac-diamide synthase 1382 10868420 Runsl_5886 Runella slithyformis DSM 19594 Cobyrinic acid ac-diamide synthase YP_004659071.1 786 R 761193 CDS YP_004659072.1 338215083 10868421 1447..1554 1 NC_015704.1 KEGG: bth:BT_4767 conjugate transposon protein; SPTR: Conjugal transfer protein TraE; hypothetical protein 1554 10868421 Runsl_5887 Runella slithyformis DSM 19594 hypothetical protein YP_004659072.1 1447 D 761193 CDS YP_004659073.1 338215084 10868422 1651..1968 1 NC_015704.1 conjugate transposon protein 1968 10868422 Runsl_5888 Runella slithyformis DSM 19594 conjugate transposon protein YP_004659073.1 1651 D 761193 CDS YP_004659074.1 338215085 10868423 1973..2362 1 NC_015704.1 hypothetical protein 2362 10868423 Runsl_5889 Runella slithyformis DSM 19594 hypothetical protein YP_004659074.1 1973 D 761193 CDS YP_004659075.1 338215086 10868424 2365..2784 1 NC_015704.1 KEGG: bth:BT_0094 conjugate transposon protein; SPTR: Putative uncharacterized protein; hypothetical protein 2784 10868424 Runsl_5890 Runella slithyformis DSM 19594 hypothetical protein YP_004659075.1 2365 D 761193 CDS YP_004659076.1 338215087 10868425 2781..3113 1 NC_015704.1 COGs: COG3451 Type IV secretory pathway VirB4 protein; KEGG: zpr:ZPR_3458 type IV secretory pathway VirB4 components-like protein; SPTR: Type IV secretory pathway VirB4 components-like protein; TIGRFAM: Bacteroides conjugation system ATPase, TraG family; hypothetical protein 3113 10868425 Runsl_5891 Runella slithyformis DSM 19594 hypothetical protein YP_004659076.1 2781 D 761193 CDS YP_004659077.1 338215088 10868426 3110..5632 1 NC_015704.1 PFAM: Domain of unknown function DUF87; TIGRFAM: Bacteroides conjugation system ATPase, TraG family; KEGG: psn:Pedsa_1679 hypothetical protein; SPTR: Putative uncharacterized protein; conjugation system ATPase, TraG family 5632 10868426 Runsl_5892 Runella slithyformis DSM 19594 conjugation system ATPase, TraG family YP_004659077.1 3110 D 761193 CDS YP_004659078.1 338215089 10868427 5644..6645 1 NC_015704.1 KEGG: zpr:ZPR_3462 TraJ family protein conjugative transposon; SPTR: TraJ family protein conjugative transposon; hypothetical protein 6645 10868427 Runsl_5893 Runella slithyformis DSM 19594 hypothetical protein YP_004659078.1 5644 D 761193 CDS YP_004659079.1 338215090 10868428 6647..7912 1 NC_015704.1 PFAM: Homologues of TraJ from Bacteroides conjugative transposon; hypothetical protein 7912 10868428 Runsl_5894 Runella slithyformis DSM 19594 hypothetical protein YP_004659079.1 6647 D 761193 CDS YP_004659080.1 338215091 10868429 7917..8126 1 NC_015704.1 KEGG: bvu:BVU_1567 conjugate transposon protein; SPTR: Putative uncharacterized protein; TIGRFAM: Bacteroides conjugative transposon TraK protein; hypothetical protein 8126 10868429 Runsl_5895 Runella slithyformis DSM 19594 hypothetical protein YP_004659080.1 7917 D 761193 CDS YP_004659081.1 338215092 10868430 8123..8737 1 NC_015704.1 TIGRFAM: Bacteroides conjugative transposon TraK protein; KEGG: pgn:PGN_0595 putative conjugate transposon protein TraA; SPTR: Putative conserved protein found in conjugate transposon TraM; conjugative transposon TraK protein 8737 10868430 Runsl_5896 Runella slithyformis DSM 19594 conjugative transposon TraK protein YP_004659081.1 8123 D 761193 CDS YP_004659082.1 338215093 10868431 8979..10460 1 NC_015704.1 PFAM: Protein of unknown function (DUF3714); KEGG: bsa:Bacsa_1116 conjugative transposon TraN protein; SPTR: Putative uncharacterized protein; TIGRFAM: Bacteroides conjugative transposon TraN protein; hypothetical protein 10460 10868431 Runsl_5897 Runella slithyformis DSM 19594 hypothetical protein YP_004659082.1 8979 D 761193 CDS YP_004659083.1 338215094 10868432 10475..11419 1 NC_015704.1 TIGRFAM: Bacteroides conjugative transposon TraN protein; SPTR: Putative uncharacterized protein; conjugative transposon TraN protein 11419 10868432 Runsl_5898 Runella slithyformis DSM 19594 conjugative transposon TraN protein YP_004659083.1 10475 D 761193 CDS YP_004659084.1 338215095 10868433 11441..12004 1 NC_015704.1 PFAM: Conjugative transposon protein TraO; COGs: COG4584 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: sli:Slin_6980 integrase catalytic region; PFAM: Integrase, catalytic core; SPTR: Integrase catalytic region; hypothetical protein 12004 10868433 Runsl_5899 Runella slithyformis DSM 19594 hypothetical protein YP_004659084.1 11441 D 761193 CDS YP_004659085.1 338215096 10868434 12252..13802 1 NC_015704.1 PFAM: Integrase core domain; COGs: COG1484 DNA replication protein; InterPro IPR003593:IPR002611; KEGG: sli:Slin_6979 IstB domain protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; SPTR: IstB domain protein ATP-binding protein; integrase catalytic subunit 13802 10868434 Runsl_5900 Runella slithyformis DSM 19594 integrase catalytic subunit YP_004659085.1 12252 D 761193 CDS YP_004659086.1 338215097 10868435 13833..14573 1 NC_015704.1 PFAM: IstB-like ATP binding protein; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: cly:Celly_2380 UvrD/REP helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: LexA repressor; IstB domain-containing protein ATP-binding protein 14573 10868435 Runsl_5901 Runella slithyformis DSM 19594 IstB domain-containing protein ATP-binding protein YP_004659086.1 13833 D 761193 CDS YP_004659087.1 338215098 10868436 complement(14664..17132) 1 NC_015704.1 PFAM: UvrD/REP helicase; COGs: COG1533 DNA repair photolyase; InterPro IPR006638:IPR007197; KEGG: cly:Celly_2381 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Conserved Archaeal protein; UvrD/REP helicase 17132 10868436 Runsl_5902 Runella slithyformis DSM 19594 UvrD/REP helicase YP_004659087.1 14664 R 761193 CDS YP_004659088.1 338215099 10868437 complement(17129..17977) 1 NC_015704.1 PFAM: Radical SAM superfamily; COGs: COG3550 conserved hypothetical protein; InterPro IPR012894:IPR012893; KEGG: cpc:Cpar_0148 HipA domain-containing protein; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; SPTR: Putative uncharacterized protein; Radical SAM domain-containing protein 17977 10868437 Runsl_5903 Runella slithyformis DSM 19594 Radical SAM domain-containing protein YP_004659088.1 17129 R 761193 CDS YP_004659089.1 338215100 10868438 complement(18037..18975) 1 NC_015704.1 PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain; InterPro IPR017508; KEGG: pvi:Cvib_0661 hypothetical protein; SPTR: Toxin-antitoxin system, toxin component, HipA family; TIGRFAM: HipA, N-terminal; HipA domain-containing protein 18975 10868438 Runsl_5904 Runella slithyformis DSM 19594 HipA domain-containing protein YP_004659089.1 18037 R 761193 CDS YP_004659090.1 338215101 10868439 complement(18972..19301) 1 NC_015704.1 TIGRFAM: HipA N-terminal domain; InterPro IPR017507:IPR001387; KEGG: cpc:Cpar_0146 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; TIGRFAM: Transcriptional regulator, HipB-like; HipA N-terminal domain-containing protein 19301 10868439 Runsl_5905 Runella slithyformis DSM 19594 HipA N-terminal domain-containing protein YP_004659090.1 18972 R 761193 CDS YP_004659091.1 338215102 10868440 complement(19294..19506) 1 NC_015704.1 PFAM: Helix-turn-helix; TIGRFAM: transcriptional regulator, y4mF family; transcriptional regulator 19506 10868440 Runsl_5906 Runella slithyformis DSM 19594 transcriptional regulator YP_004659091.1 19294 R 761193 CDS YP_004659092.1 338215103 10868441 complement(19621..19911) 1 NC_015704.1 Prodigal; manually curated; hypothetical protein 19911 10868441 Runsl_5907 Runella slithyformis DSM 19594 hypothetical protein YP_004659092.1 19621 R 761193 CDS YP_004659093.1 338215104 10868443 complement(20650..21084) 1 NC_015704.1 COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: bsa:Bacsa_3149 conjugate transposon protein; SPTR: Conjugative transposon protein TraA; hypothetical protein 21084 10868443 Runsl_5909 Runella slithyformis DSM 19594 hypothetical protein YP_004659093.1 20650 R 761193 CDS YP_004659094.1 338215105 10868444 21241..22065 1 NC_015704.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; hypothetical protein 22065 10868444 Runsl_5910 Runella slithyformis DSM 19594 hypothetical protein YP_004659094.1 21241 D 761193 CDS YP_004659095.1 338215106 10868445 22072..22455 1 NC_015704.1 hypothetical protein 22455 10868445 Runsl_5911 Runella slithyformis DSM 19594 hypothetical protein YP_004659095.1 22072 D 761193 CDS YP_004659096.1 338215107 10868446 22452..22934 1 NC_015704.1 hypothetical protein 22934 10868446 Runsl_5912 Runella slithyformis DSM 19594 hypothetical protein YP_004659096.1 22452 D 761193 CDS YP_004659097.1 338215108 10868447 complement(23055..23609) 1 NC_015704.1 KEGG: sli:Slin_6693 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 23609 10868447 Runsl_5913 Runella slithyformis DSM 19594 hypothetical protein YP_004659097.1 23055 R 761193 CDS YP_004659098.1 338215109 10868448 complement(23830..24627) 1 NC_015704.1 hypothetical protein 24627 10868448 Runsl_5914 Runella slithyformis DSM 19594 hypothetical protein YP_004659098.1 23830 R 761193 CDS YP_004659099.1 338215110 10868449 complement(25240..25722) 1 NC_015704.1 KEGG: sli:Slin_6855 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 25722 10868449 Runsl_5915 Runella slithyformis DSM 19594 hypothetical protein YP_004659099.1 25240 R 761193 CDS YP_004659100.1 338215111 10868450 complement(25953..26954) 1 NC_015704.1 InterPro IPR000525; KEGG: gka:GKP02 replication initiator protein; PFAM: Initiator Rep protein; SPTR: Replication initiator protein; hypothetical protein 26954 10868450 Runsl_5916 Runella slithyformis DSM 19594 hypothetical protein YP_004659100.1 25953 R 761193 CDS YP_004659101.1 338215112 10868451 27816..29006 1 NC_015704.1 PFAM: Initiator Replication protein; COGs: COG2217 Cation transport ATPase; InterPro IPR006403:IPR006416:IPR001757:IPR006121:IPR008250:IPR0058 34; KEGG: sli:Slin_6890 copper-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Copper-translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; initiator RepB protein 29006 10868451 Runsl_5917 Runella slithyformis DSM 19594 initiator RepB protein YP_004659101.1 27816 D 761193 CDS YP_004659102.1 338215113 10868452 29100..31316 1 NC_015704.1 PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: zpr:ZPR_4233 heavy metal-associated protein; SPTR: Heavy metal-associated protein; heavy metal translocating P-type ATPase 31316 10868452 Runsl_5918 Runella slithyformis DSM 19594 heavy metal translocating P-type ATPase YP_004659102.1 29100 D 761193 CDS YP_004659103.1 338215114 10868453 31341..31550 1 NC_015704.1 PFAM: Heavy-metal-associated domain; COGs: COG1451 metal-dependent hydrolase; InterPro IPR002725; KEGG: cyp:PCC8801_2959 hypothetical protein; PFAM: Protein of unknown function DUF45; SPTR: Putative uncharacterized protein; heavy metal-associated protein 31550 10868453 Runsl_5919 Runella slithyformis DSM 19594 heavy metal-associated protein YP_004659103.1 31341 D 761193 CDS YP_004659104.1 338215115 10868454 complement(31572..32246) 1 NC_015704.1 PFAM: Protein of unknown function DUF45; COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR004473:IPR014001:IPR007409:IPR006935; KEGG: cyh:Cyan8802_3142 type I site-specific deoxyribonuclease, HsdR family; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; SPTR: Type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; hypothetical protein 32246 10868454 Runsl_5920 Runella slithyformis DSM 19594 hypothetical protein YP_004659104.1 31572 R 761193 CDS YP_004659105.1 338215116 10868455 complement(32246..35446) 1 NC_015704.1 PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: fra:Francci3_4012 restriction modification system DNA specificity subunit; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Restriction modification system DNA specificity domain; HsdR family type I site-specific deoxyribonuclease 35446 10868455 Runsl_5921 Runella slithyformis DSM 19594 HsdR family type I site-specific deoxyribonuclease YP_004659105.1 32246 R 761193 CDS YP_004659106.1 338215117 10868456 complement(35455..36726) 1 NC_015704.1 PFAM: Type I restriction modification DNA specificity domain; COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: swo:Swol_2258 type I restriction-modification system, M subunit; PFAM: DNA methylase, adenine-specific; SPTR: Type I restriction-modification system, M subunit; restriction modification system DNA specificity domain-containing protein 36726 10868456 Runsl_5922 Runella slithyformis DSM 19594 restriction modification system DNA specificity domain-containing protein YP_004659106.1 35455 R 761193 CDS YP_004659107.1 338215118 10868457 complement(36717..39620) 1 NC_015704.1 PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM); COGs: COG2217 Cation transport ATPase; InterPro IPR006404:IPR006416:IPR001757:IPR008250:IPR005834; KEGG: dfe:Dfer_1187 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; PRIAM: Zinc-exporting ATPase; SPTR: Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; N-6 DNA methylase 39620 10868457 Runsl_5923 Runella slithyformis DSM 19594 N-6 DNA methylase YP_004659107.1 36717 R 761193 CDS YP_004659108.1 338215119 10868458 complement(39905..41893) 1 NC_015704.1 PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; KEGG: sli:Slin_6747 hypothetical protein; SPTR: Putative uncharacterized protein; heavy metal translocating P-type ATPase 41893 10868458 Runsl_5924 Runella slithyformis DSM 19594 heavy metal translocating P-type ATPase YP_004659108.1 39905 R 761193 CDS YP_004659109.1 338215120 10868459 complement(41907..42530) 1 NC_015704.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: fjo:Fjoh_3345 RND family efflux transporter MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; hypothetical protein 42530 10868459 Runsl_5925 Runella slithyformis DSM 19594 hypothetical protein YP_004659109.1 41907 R 761193 CDS YP_004659110.1 338215121 10868460 complement(42574..43821) 1 NC_015704.1 TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG3696 Putative silver efflux pump; InterPro IPR004763:IPR001036:IPR003423; KEGG: chu:CHU_1512 cation efflux protein; PFAM: Acriflavin resistance protein; Outer membrane efflux protein; SPTR: Cation efflux protein; TIGRFAM: Heavy metal efflux pump CzcA; RND family efflux transporter MFP subunit 43821 10868460 Runsl_5926 Runella slithyformis DSM 19594 RND family efflux transporter MFP subunit YP_004659110.1 42574 R 761193 CDS YP_004659111.1 338215122 10868461 complement(43834..48174) 1 NC_015704.1 PFAM: Outer membrane efflux protein; AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); KEGG: fjo:Fjoh_3348 hypothetical protein; SPTR: Putative uncharacterized protein; CzcA family heavy metal efflux pump 48174 10868461 Runsl_5927 Runella slithyformis DSM 19594 CzcA family heavy metal efflux pump YP_004659111.1 43834 R 761193 CDS YP_004659112.1 338215123 10868462 complement(48293..48706) 1 NC_015704.1 COGs: COG2217 Cation transport ATPase; InterPro IPR006403:IPR006416:IPR001757:IPR008250:IPR005834; KEGG: mtt:Ftrac_2065 copper-translocating p-type atpase; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Copper-translocating P-type ATPase; TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; hypothetical protein 48706 10868462 Runsl_5928 Runella slithyformis DSM 19594 hypothetical protein YP_004659112.1 48293 R 761193 CDS YP_004659113.1 338215124 10868463 complement(48681..50726) 1 NC_015704.1 PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; KEGG: sli:Slin_6865 hypothetical protein; SPTR: Putative uncharacterized protein; copper-translocating P-type ATPase 50726 10868463 Runsl_5929 Runella slithyformis DSM 19594 copper-translocating P-type ATPase YP_004659113.1 48681 R 761193 CDS YP_004659114.1 338215125 10868464 complement(50732..51490) 1 NC_015704.1 KEGG: cle:Clole_0353 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 51490 10868464 Runsl_5930 Runella slithyformis DSM 19594 hypothetical protein YP_004659114.1 50732 R 761193 CDS YP_004659115.1 338215126 10868465 complement(51501..52166) 1 NC_015704.1 KEGG: gfo:GFO_1264 secreted protein; SPTR: Secreted protein; hypothetical protein 52166 10868465 Runsl_5931 Runella slithyformis DSM 19594 hypothetical protein YP_004659115.1 51501 R 761193 CDS YP_004659116.1 338215127 10868466 complement(52287..52739) 1 NC_015704.1 KEGG: sli:Slin_6867 hypothetical protein; SPTR: Putative uncharacterized protein; secreted protein 52739 10868466 Runsl_5932 Runella slithyformis DSM 19594 secreted protein YP_004659116.1 52287 R 761193 CDS YP_004659117.1 338215128 10868467 complement(52827..53300) 1 NC_015704.1 PFAM: Protein of unknown function (DUF3347); KEGG: fjo:Fjoh_3075 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 53300 10868467 Runsl_5933 Runella slithyformis DSM 19594 hypothetical protein YP_004659117.1 52827 R 761193 CDS YP_004659118.1 338215129 10868468 complement(53350..54600) 1 NC_015704.1 KEGG: psn:Pedsa_1579 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated; hypothetical protein 54600 10868468 Runsl_5934 Runella slithyformis DSM 19594 hypothetical protein YP_004659118.1 53350 R 761193 CDS YP_004659119.1 338215130 10868469 complement(54600..54809) 1 NC_015704.1 COGs: COG2608 Copper chaperone; InterPro IPR003457:IPR006121; KEGG: zpr:ZPR_3374 mercuric transport protein; PFAM: Heavy metal transport/detoxification protein; Mercuric transport protein MerT; SPTR: Mercuric transport protein; hypothetical protein 54809 10868469 Runsl_5935 Runella slithyformis DSM 19594 hypothetical protein YP_004659119.1 54600 R 761193 CDS YP_004659120.1 338215131 10868470 complement(54806..55411) 1 NC_015704.1 PFAM: Heavy-metal-associated domain; MerT mercuric transport protein; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: aoe:Clos_1084 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; Heavy metal transport/detoxification protein 55411 10868470 Runsl_5936 Runella slithyformis DSM 19594 Heavy metal transport/detoxification protein YP_004659120.1 54806 R 761193 CDS YP_004659121.1 338215132 10868471 complement(55408..56055) 1 NC_015704.1 PFAM: Methyltransferase domain; KEGG: sli:Slin_6813 hypothetical protein; SPTR: Putative uncharacterized protein; type 11 methyltransferase 56055 10868471 Runsl_5937 Runella slithyformis DSM 19594 type 11 methyltransferase YP_004659121.1 55408 R 761193 CDS YP_004659122.1 338215133 10868472 complement(56070..56942) 1 NC_015704.1 PFAM: Protein of unknown function (DUF2911); KEGG: cao:Celal_3908 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated; hypothetical protein 56942 10868472 Runsl_5938 Runella slithyformis DSM 19594 hypothetical protein YP_004659122.1 56070 R 761193 CDS YP_004659123.1 338215134 10868473 complement(56939..57385) 1 NC_015704.1 KEGG: psn:Pedsa_1599 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 57385 10868473 Runsl_5939 Runella slithyformis DSM 19594 hypothetical protein YP_004659123.1 56939 R 761193 CDS YP_004659124.1 338215135 10868474 complement(57394..57960) 1 NC_015704.1 PFAM: Protein of unknown function (DUF3347); KEGG: sli:Slin_6863 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 57960 10868474 Runsl_5940 Runella slithyformis DSM 19594 hypothetical protein YP_004659124.1 57394 R 761193 CDS YP_004659125.1 338215136 10868475 complement(58036..58503) 1 NC_015704.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: chu:CHU_1501 copper transport system protein; PFAM: Secretion protein HlyD; SPTR: Possible component of copper transport system; TIGRFAM: Secretion protein HlyD; hypothetical protein 58503 10868475 Runsl_5941 Runella slithyformis DSM 19594 hypothetical protein YP_004659125.1 58036 R 761193 CDS YP_004659126.1 338215137 10868476 complement(58666..59874) 1 NC_015704.1 TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sli:Slin_6878 RND family efflux transporter MFP subunit; SPTR: RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 59874 10868476 Runsl_5942 Runella slithyformis DSM 19594 RND family efflux transporter MFP subunit YP_004659126.1 58666 R 761193 CDS YP_004659127.1 338215138 10868477 complement(59871..61478) 1 NC_015704.1 COGs: COG1538 Outer membrane protein; KEGG: chu:CHU_1503 hypothetical protein; SPTR: Putative uncharacterized protein; RND family efflux transporter MFP subunit 61478 10868477 Runsl_5943 Runella slithyformis DSM 19594 RND family efflux transporter MFP subunit YP_004659127.1 59871 R 761193 CDS YP_004659128.1 338215139 10868478 complement(61453..62730) 1 NC_015704.1 COGs: COG3696 Putative silver efflux pump; InterPro IPR001036; KEGG: chu:CHU_1504 heavy metal efflux pump protein; PFAM: Acriflavin resistance protein; SPTR: Heavy metal efflux pump protein; hypothetical protein 62730 10868478 Runsl_5944 Runella slithyformis DSM 19594 hypothetical protein YP_004659128.1 61453 R 761193 CDS YP_004659129.1 338215140 10868479 complement(62717..64651) 1 NC_015704.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); COGs: COG3696 Putative silver efflux pump; InterPro IPR001036; KEGG: chu:CHU_1504 heavy metal efflux pump protein; PFAM: Acriflavin resistance protein; SPTR: Heavy metal efflux pump protein; acriflavin resistance protein 64651 10868479 Runsl_5945 Runella slithyformis DSM 19594 acriflavin resistance protein YP_004659129.1 62717 R 761193 CDS YP_004659130.1 338215141 10868480 complement(64648..65934) 1 NC_015704.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); KEGG: sli:Slin_1514 hypothetical protein; SPTR: Putative uncharacterized protein; acriflavin resistance protein 65934 10868480 Runsl_5946 Runella slithyformis DSM 19594 acriflavin resistance protein YP_004659130.1 64648 R 761193 CDS YP_004659131.1 338215142 10868481 complement(65966..67015) 1 NC_015704.1 COGs: COG2132 Putative multicopper oxidase; InterPro IPR011707:IPR001117:IPR011706; KEGG: sli:Slin_6866 bilirubin oxidase; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 1; Multicopper oxidase, type 2; PRIAM: Bilirubin oxidase; SPTR: Bilirubin oxidase; hypothetical protein 67015 10868481 Runsl_5947 Runella slithyformis DSM 19594 hypothetical protein YP_004659131.1 65966 R 761193 CDS YP_004659132.1 338215143 10868482 complement(67064..68554) 1 NC_015704.1 PFAM: Multicopper oxidase; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: fjo:Fjoh_0190 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: AraC family transcriptional regulator; Bilirubin oxidase 68554 10868482 Runsl_5948 Runella slithyformis DSM 19594 Bilirubin oxidase YP_004659132.1 67064 R 761193 CDS YP_004659133.1 338215144 10868483 complement(68573..69136) 1 NC_015704.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; KEGG: dfe:Dfer_3108 hypothetical protein; SPTR: Putative uncharacterized protein; AraC family transcriptional regulator 69136 10868483 Runsl_5949 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004659133.1 68573 R 761193 CDS YP_004659134.1 338215145 10868484 complement(69257..69697) 1 NC_015704.1 KEGG: sli:Slin_6854 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 69697 10868484 Runsl_5950 Runella slithyformis DSM 19594 hypothetical protein YP_004659134.1 69257 R 761193 CDS YP_004659135.1 338215146 10868485 69901..70299 1 NC_015704.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107:IPR002104; KEGG: sli:Slin_6972 integrase family protein; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Integrase family protein; hypothetical protein 70299 10868485 Runsl_5951 Runella slithyformis DSM 19594 hypothetical protein YP_004659135.1 69901 D 761193 CDS YP_004659136.1 338215147 10868486 70265..71248 1 NC_015704.1 PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; integrase family protein 71248 10868486 Runsl_5952 Runella slithyformis DSM 19594 integrase family protein YP_004659136.1 70265 D 761193 CDS YP_004659137.1 338215148 10868487 complement(71261..71581) 1 NC_015704.1 COGs: COG3415 Transposase and inactivated derivatives; InterPro IPR001523; KEGG: sli:Slin_5275 transposase; PFAM: Paired box protein, N-terminal; SPTR: Transposase and inactivated derivatives-like protein; hypothetical protein 71581 10868487 Runsl_5953 Runella slithyformis DSM 19594 hypothetical protein YP_004659137.1 71261 R 761193 CDS YP_004659138.1 338215149 10868488 complement(71706..72716) 1 NC_015704.1 PFAM: Rhodopirellula transposase; 'Paired box' domain; KEGG: rrs:RoseRS_0630 hypothetical protein; SPTR: Putative uncharacterized protein; paired box domain-containing protein 72716 10868488 Runsl_5954 Runella slithyformis DSM 19594 paired box domain-containing protein YP_004659138.1 71706 R 761193 CDS YP_004659139.1 338215150 10868489 72802..73275 1 NC_015704.1 KEGG: rrs:RoseRS_0631 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 73275 10868489 Runsl_5955 Runella slithyformis DSM 19594 hypothetical protein YP_004659139.1 72802 D 761193 CDS YP_004659140.1 338215151 10868490 73275..73946 1 NC_015704.1 hypothetical protein 73946 10868490 Runsl_5956 Runella slithyformis DSM 19594 hypothetical protein YP_004659140.1 73275 D 761193 CDS YP_004659141.1 338215152 10868491 complement(73970..74257) 1 NC_015704.1 KEGG: ccu:Ccur_13910 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 74257 10868491 Runsl_5957 Runella slithyformis DSM 19594 hypothetical protein YP_004659141.1 73970 R 761193 CDS YP_004659142.1 338215153 10868492 complement(74432..75289) 1 NC_015704.1 KEGG: sli:Slin_4859 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 75289 10868492 Runsl_5958 Runella slithyformis DSM 19594 hypothetical protein YP_004659142.1 74432 R 761193 CDS YP_004659143.1 338215154 10868493 complement(75294..75731) 1 NC_015704.1 KEGG: ccu:Ccur_13910 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 75731 10868493 Runsl_5959 Runella slithyformis DSM 19594 hypothetical protein YP_004659143.1 75294 R 761193 CDS YP_004659144.1 338215155 10868494 complement(75721..76764) 1 NC_015704.1 COGs: COG3621 Patatin; InterPro IPR002641; KEGG: zpr:ZPR_3998 patatin; PFAM: Patatin; SPTR: Patatin; hypothetical protein 76764 10868494 Runsl_5960 Runella slithyformis DSM 19594 hypothetical protein YP_004659144.1 75721 R 761193 CDS YP_004659145.1 338215156 10868495 complement(76777..77865) 1 NC_015704.1 PFAM: Patatin-like phospholipase; COGs: COG2856 Zn peptidase; InterPro IPR001387:IPR010359; KEGG: psn:Pedsa_1879 protein of unknown function DUF955; PFAM: Protein of unknown function DUF955; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Putative uncharacterized protein; Patatin 77865 10868495 Runsl_5961 Runella slithyformis DSM 19594 Patatin YP_004659145.1 76777 R 761193 CDS YP_004659146.1 338215157 10868496 77907..79043 1 NC_015704.1 PFAM: Helix-turn-helix; Domain of unknown function (DUF955); KEGG: kol:Kole_0648 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 79043 10868496 Runsl_5962 Runella slithyformis DSM 19594 hypothetical protein YP_004659146.1 77907 D 761193 CDS YP_004659147.1 338215158 10868497 79043..79552 1 NC_015704.1 COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160; KEGG: rbo:A1I_03790 response regulator PleD; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: Response regulator PleD; TIGRFAM: Diguanylate cyclase, predicted; hypothetical protein 79552 10868497 Runsl_5963 Runella slithyformis DSM 19594 hypothetical protein YP_004659147.1 79043 D 761193 CDS YP_004659148.1 338215159 10868498 79568..80344 1 NC_015704.1 PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain; COGs: COG4646 DNA methylase; InterPro IPR014001:IPR001650:IPR003356; KEGG: pgn:PGN_0086 putative DNA methylase; PFAM: DNA methylase, adenine-specific; DNA/RNA helicase, C-terminal; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal; SPTR: Putative DNA methylase; diguanylate cyclase 80344 10868498 Runsl_5964 Runella slithyformis DSM 19594 diguanylate cyclase YP_004659148.1 79568 D 761193 CDS YP_004659149.1 338215160 10868499 complement(80346..85334) 1 NC_015704.1 PFAM: N-6 DNA Methylase; Helicase conserved C-terminal domain; KEGG: bfr:BF0143 hypothetical protein; SPTR: Putative uncharacterized protein; N-6 DNA methylase 85334 10868499 Runsl_5965 Runella slithyformis DSM 19594 N-6 DNA methylase YP_004659149.1 80346 R 761193 CDS YP_004659150.1 338215161 10868500 complement(85324..85824) 1 NC_015704.1 PFAM: Domain of unknown function (DUF1896); KEGG: sli:Slin_6836 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 85824 10868500 Runsl_5966 Runella slithyformis DSM 19594 hypothetical protein YP_004659150.1 85324 R 761193 CDS YP_004659151.1 338215162 10868501 complement(85769..88090) 1 NC_015704.1 hypothetical protein 88090 10868501 Runsl_5967 Runella slithyformis DSM 19594 hypothetical protein YP_004659151.1 85769 R 761193 CDS YP_004659152.1 338215163 10868502 complement(88111..88392) 1 NC_015704.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: wvi:Weevi_1329 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23; hypothetical protein 88392 10868502 Runsl_5968 Runella slithyformis DSM 19594 hypothetical protein YP_004659152.1 88111 R 761193 CDS YP_004659153.1 338215164 10868503 88494..89111 1 NC_015704.1 PFAM: Peptidase family M23; InterPro IPR001387; KEGG: cao:Celal_0834 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Predicted protein; peptidase M23 89111 10868503 Runsl_5969 Runella slithyformis DSM 19594 peptidase M23 YP_004659153.1 88494 D 761193 CDS YP_004659154.1 338215165 10868504 89206..89409 1 NC_015704.1 PFAM: Helix-turn-helix; InterPro IPR017508; KEGG: bfs:BF0724 HipA-like protein; SPTR: Putative uncharacterized protein; TIGRFAM: HipA, N-terminal; helix-turn-helix domain-containing protein 89409 10868504 Runsl_5970 Runella slithyformis DSM 19594 helix-turn-helix domain-containing protein YP_004659154.1 89206 D 761193 CDS YP_004659155.1 338215166 10868505 89406..89747 1 NC_015704.1 TIGRFAM: HipA N-terminal domain; COGs: COG3550 conserved hypothetical protein; InterPro IPR012894:IPR012893; KEGG: zpr:ZPR_4409 HipA-like protein; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; SPTR: HipA-like protein; HipA N-terminal domain-containing protein 89747 10868505 Runsl_5971 Runella slithyformis DSM 19594 HipA N-terminal domain-containing protein YP_004659155.1 89406 D 761193 CDS YP_004659156.1 338215167 10868506 89744..90757 1 NC_015704.1 PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain; HipA domain-containing protein 90757 10868506 Runsl_5972 Runella slithyformis DSM 19594 HipA domain-containing protein YP_004659156.1 89744 D 761193 CDS YP_004659157.1 338215168 10868507 complement(90763..91287) 1 NC_015704.1 KEGG: shg:Sph21_3584 hypothetical protein; SPTR: TraG family protein; hypothetical protein 91287 10868507 Runsl_5973 Runella slithyformis DSM 19594 hypothetical protein YP_004659157.1 90763 R 761193 CDS YP_004659158.1 338215169 10868508 complement(91331..93478) 1 NC_015704.1 PFAM: TraG/TraD family; Signal predicted by SignalP 3.0 HMM; IMG reference gene:2505789148_SP; hypothetical protein 93478 10868508 Runsl_5974 Runella slithyformis DSM 19594 hypothetical protein YP_004659158.1 91331 R 761193 CDS YP_004659159.1 338215038 10868417 complement(296..1468) 1 NC_015705.1 InterPro IPR014942; KEGG: sbu:SpiBuddy_2626 hypothetical protein; PFAM: Protein of unknown function DUF1814; SPTR: Putative uncharacterized protein; AAA ATPase 1468 10868417 Runsl_5768 Runella slithyformis DSM 19594 AAA ATPase YP_004659159.1 296 R 761193 CDS YP_004659160.1 338215039 10868372 complement(2100..2879) 1 NC_015705.1 PFAM: Domain of unknown function (DUF1814); KEGG: sbu:SpiBuddy_2625 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2879 10868372 Runsl_5769 Runella slithyformis DSM 19594 hypothetical protein YP_004659160.1 2100 R 761193 CDS YP_004659161.1 338215040 10868373 complement(2876..3490) 1 NC_015705.1 hypothetical protein 3490 10868373 Runsl_5770 Runella slithyformis DSM 19594 hypothetical protein YP_004659161.1 2876 R 761193 CDS YP_004659162.1 338215041 10868374 complement(3572..3844) 1 NC_015705.1 Prodigal; manually curated; hypothetical protein 3844 10868374 Runsl_5771 Runella slithyformis DSM 19594 hypothetical protein YP_004659162.1 3572 R 761193 CDS YP_004659163.1 338215042 10868376 5120..5719 1 NC_015705.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; Cobyrinic acid ac-diamide synthase 5719 10868376 Runsl_5773 Runella slithyformis DSM 19594 Cobyrinic acid ac-diamide synthase YP_004659163.1 5120 D 761193 CDS YP_004659164.1 338215043 10868377 5774..6055 1 NC_015705.1 COGs: COG5527 Protein involved in initiation of plasmid replication; InterPro IPR000525; KEGG: bmq:BMQ_pBM60001 replication initiator protein; PFAM: Initiator Rep protein; SPTR: Replication initiator protein; hypothetical protein 6055 10868377 Runsl_5774 Runella slithyformis DSM 19594 hypothetical protein YP_004659164.1 5774 D 761193 CDS YP_004659165.1 338215044 10868378 6701..8065 1 NC_015705.1 PFAM: Initiator Replication protein; Prodigal; manually curated; initiator RepB protein 8065 10868378 Runsl_5775 Runella slithyformis DSM 19594 initiator RepB protein YP_004659165.1 6701 D 761193 CDS YP_004659166.1 338215045 10868380 complement(8648..9046) 1 NC_015705.1 InterPro IPR007272; KEGG: sli:Slin_6935 protein of unknown function DUF395 YeeE/YedE; PFAM: Protein of unknown function DUF395, YeeE/YedE; SPTR: Putative uncharacterized protein; hypothetical protein 9046 10868380 Runsl_5777 Runella slithyformis DSM 19594 hypothetical protein YP_004659166.1 8648 R 761193 CDS YP_004659167.1 338215046 10868381 complement(9109..9612) 1 NC_015705.1 PFAM: YeeE/YedE family (DUF395); InterPro IPR007272; KEGG: sli:Slin_6934 protein of unknown function DUF395 YeeE/YedE; PFAM: Protein of unknown function DUF395, YeeE/YedE; SPTR: Putative uncharacterized protein; hypothetical protein 9612 10868381 Runsl_5778 Runella slithyformis DSM 19594 hypothetical protein YP_004659167.1 9109 R 761193 CDS YP_004659168.1 338215047 10868382 complement(9643..10218) 1 NC_015705.1 PFAM: YeeE/YedE family (DUF395); KEGG: mtt:Ftrac_3650 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 10218 10868382 Runsl_5779 Runella slithyformis DSM 19594 hypothetical protein YP_004659168.1 9643 R 761193 CDS YP_004659169.1 338215048 10868383 complement(10230..11642) 1 NC_015705.1 PFAM: outer membrane porin, OprD family; COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR004843:IPR008334; KEGG: zpr:ZPR_1818 5'-nucleotidase; PFAM: Metallophosphoesterase; 5'-Nucleotidase, C-terminal; PRIAM: 5'-nucleotidase; SPTR: 5'-nucleotidase; hypothetical protein 11642 10868383 Runsl_5780 Runella slithyformis DSM 19594 hypothetical protein YP_004659169.1 10230 R 761193 CDS YP_004659170.1 338215049 10868384 complement(11730..13406) 1 NC_015705.1 PFAM: 5'-nucleotidase, C-terminal domain; Calcineurin-like phosphoesterase; COGs: COG1416 conserved hypothetical protein; InterPro IPR014865; KEGG: chu:CHU_1583 hypothetical protein; SPTR: Putative uncharacterized protein; 5'-nucleotidase 13406 10868384 Runsl_5781 Runella slithyformis DSM 19594 5'-nucleotidase YP_004659170.1 11730 R 761193 CDS YP_004659171.1 338215050 10868385 complement(13418..13834) 1 NC_015705.1 PFAM: DsrE/DsrF-like family; COGs: COG3258 Cytochrome c; InterPro IPR003088; KEGG: sli:Slin_6947 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I; hypothetical protein 13834 10868385 Runsl_5782 Runella slithyformis DSM 19594 hypothetical protein YP_004659171.1 13418 R 761193 CDS YP_004659172.1 338215051 10868386 complement(13831..14913) 1 NC_015705.1 PFAM: Cytochrome c; cytochrome c class I 14913 10868386 Runsl_5783 Runella slithyformis DSM 19594 cytochrome c class I YP_004659172.1 13831 R 761193 CDS YP_004659173.1 338215052 10868387 complement(14997..15122) 1 NC_015705.1 KEGG: cao:Celal_2348 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 15122 10868387 Runsl_5784 Runella slithyformis DSM 19594 hypothetical protein YP_004659173.1 14997 R 761193 CDS YP_004659174.1 338215053 10868388 complement(15086..15331) 1 NC_015705.1 InterPro IPR013217; KEGG: shg:Sph21_0869 methyltransferase type 12; PFAM: Methyltransferase type 12; SPTR: Putative uncharacterized protein; hypothetical protein 15331 10868388 Runsl_5785 Runella slithyformis DSM 19594 hypothetical protein YP_004659174.1 15086 R 761193 CDS YP_004659175.1 338215054 10868389 complement(15343..15960) 1 NC_015705.1 PFAM: Methyltransferase domain; KEGG: gfo:GFO_1268 hypothetical protein; SPTR: Putative uncharacterized protein; type 12 methyltransferase 15960 10868389 Runsl_5786 Runella slithyformis DSM 19594 type 12 methyltransferase YP_004659175.1 15343 R 761193 CDS YP_004659176.1 338215055 10868390 complement(16020..16616) 1 NC_015705.1 PFAM: Tellurite resistance protein TehB; COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR005746:IPR013766; KEGG: shg:Sph21_3201 thioredoxin; PFAM: Thioredoxin domain; SPTR: Thioredoxin; TIGRFAM: Thioredoxin; hypothetical protein 16616 10868390 Runsl_5787 Runella slithyformis DSM 19594 hypothetical protein YP_004659176.1 16020 R 761193 CDS YP_004659177.1 338215056 10868391 complement(16613..16933) 1 NC_015705.1 PFAM: Thioredoxin; TIGRFAM: thioredoxin; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: sli:Slin_6177 beta-lactamase; SMART: Rhodanese-like; SPTR: Beta-lactamase domain protein; thioredoxin 16933 10868391 Runsl_5788 Runella slithyformis DSM 19594 thioredoxin YP_004659177.1 16613 R 761193 CDS YP_004659178.1 338215057 10868392 complement(17094..18515) 1 NC_015705.1 PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain; KEGG: zpr:ZPR_3646 hypothetical protein; SPTR: Putative uncharacterized protein; Rhodanese-like protein 18515 10868392 Runsl_5789 Runella slithyformis DSM 19594 Rhodanese-like protein YP_004659178.1 17094 R 761193 CDS YP_004659179.1 338215058 10868393 complement(18705..18959) 1 NC_015705.1 PFAM: Domain of unknown function DUF; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: shg:Sph21_3587 beta-lactamase domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Metallo-beta-lactamase family protein; hypothetical protein 18959 10868393 Runsl_5790 Runella slithyformis DSM 19594 hypothetical protein YP_004659179.1 18705 R 761193 CDS YP_004659180.1 338215059 10868394 complement(19219..20634) 1 NC_015705.1 PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain; COGs: COG0730 permease; InterPro IPR002781; KEGG: cat:CA2559_12623 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: Membrane protein; Rhodanese-like protein 20634 10868394 Runsl_5791 Runella slithyformis DSM 19594 Rhodanese-like protein YP_004659180.1 19219 R 761193 CDS YP_004659181.1 338215060 10868395 complement(20736..21542) 1 NC_015705.1 PFAM: Sulfite exporter TauE/SafE; Prodigal; manually curated; hypothetical protein 21542 10868395 Runsl_5792 Runella slithyformis DSM 19594 hypothetical protein YP_004659181.1 20736 R 761193 CDS YP_004659182.1 338215061 10868398 complement(22784..23182) 1 NC_015705.1 KEGG: shg:Sph21_4811 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 23182 10868398 Runsl_5795 Runella slithyformis DSM 19594 hypothetical protein YP_004659182.1 22784 R 761193 CDS YP_004659183.1 338215062 10868399 complement(23413..24210) 1 NC_015705.1 InterPro IPR012910; KEGG: cpi:Cpin_6408 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; SPTR: Outer membrane protein; hypothetical protein 24210 10868399 Runsl_5796 Runella slithyformis DSM 19594 hypothetical protein YP_004659183.1 23413 R 761193 CDS YP_004659184.1 338215063 10868400 complement(24322..26631) 1 NC_015705.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: ppn:Palpr_2726 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; TonB-dependent receptor plug 26631 10868400 Runsl_5797 Runella slithyformis DSM 19594 TonB-dependent receptor plug YP_004659184.1 24322 R 761193 CDS YP_004659185.1 338215064 10868401 complement(26859..29990) 1 NC_015705.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sli:Slin_2818 efflux transporter RND family, MFP subunit; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; acriflavin resistance protein 29990 10868401 Runsl_5798 Runella slithyformis DSM 19594 acriflavin resistance protein YP_004659185.1 26859 R 761193 CDS YP_004659186.1 338215065 10868402 complement(30013..31077) 1 NC_015705.1 TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_2819 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; RND family efflux transporter MFP subunit 31077 10868402 Runsl_5799 Runella slithyformis DSM 19594 RND family efflux transporter MFP subunit YP_004659186.1 30013 R 761193 CDS YP_004659187.1 338215066 10868403 complement(31088..32455) 1 NC_015705.1 PFAM: Outer membrane efflux protein; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: fjo:Fjoh_0180 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; outer membrane efflux protein 32455 10868403 Runsl_5800 Runella slithyformis DSM 19594 outer membrane efflux protein YP_004659187.1 31088 R 761193 CDS YP_004659188.1 338215067 10868404 complement(32549..33481) 1 NC_015705.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: lby:Lbys_3124 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Two component transcriptional regulator, LytTR family; AraC family transcriptional regulator 33481 10868404 Runsl_5801 Runella slithyformis DSM 19594 AraC family transcriptional regulator YP_004659188.1 32549 R 761193 CDS YP_004659189.1 338215068 10868405 complement(33492..34256) 1 NC_015705.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: lby:Lbys_3125 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; LytTR family two component transcriptional regulator 34256 10868405 Runsl_5802 Runella slithyformis DSM 19594 LytTR family two component transcriptional regulator YP_004659189.1 33492 R 761193 CDS YP_004659190.1 338215069 10868406 complement(34253..35308) 1 NC_015705.1 PFAM: Histidine kinase; putative signal transduction histidine kinase 35308 10868406 Runsl_5803 Runella slithyformis DSM 19594 putative signal transduction histidine kinase YP_004659190.1 34253 R 761193 CDS YP_004659191.1 338215070 10868407 35317..35445 1 NC_015705.1 hypothetical protein 35445 10868407 Runsl_5804 Runella slithyformis DSM 19594 hypothetical protein YP_004659191.1 35317 D 761193 CDS YP_004659192.1 338215071 10868408 35438..35536 1 NC_015705.1 manually curated; hypothetical protein 35536 10868408 Runsl_5805 Runella slithyformis DSM 19594 hypothetical protein YP_004659192.1 35438 D 761193 CDS YP_004659193.1 338215072 10868410 complement(35734..37254) 1 NC_015705.1 PFAM: Beta-lactamase; Domain of unknown function (DUF3471); beta-lactamase 37254 10868410 Runsl_5807 Runella slithyformis DSM 19594 beta-lactamase YP_004659193.1 35734 R 761193 CDS YP_004659194.1 338215073 10868411 complement(37399..37560) 1 NC_015705.1 hypothetical protein 37560 10868411 Runsl_5808 Runella slithyformis DSM 19594 hypothetical protein YP_004659194.1 37399 R 761193 CDS YP_004659195.1 338215074 10868412 37600..37881 1 NC_015705.1 InterPro IPR003961:IPR001701; KEGG: dfe:Dfer_2105 glycoside hydrolase family 9; PFAM: Glycoside hydrolase, family 9; Fibronectin, type III; SMART: Fibronectin, type III; SPTR: Glycoside hydrolase, family 9; hypothetical protein 37881 10868412 Runsl_5809 Runella slithyformis DSM 19594 hypothetical protein YP_004659195.1 37600 D 761193 CDS YP_004659196.1 338215075 10868413 complement(38040..41777) 1 NC_015705.1 PFAM: Glycosyl hydrolase family 9; Fibronectin type III domain; N-terminal ig-like domain of cellulase; KEGG: lby:Lbys_3059 lipoprotein; SPTR: Putative lipoprotein; glycoside hydrolase family 9 41777 10868413 Runsl_5810 Runella slithyformis DSM 19594 glycoside hydrolase family 9 YP_004659196.1 38040 R 761193 CDS YP_004659197.1 338215076 10868414 complement(41870..43144) 1 NC_015705.1 hypothetical protein 43144 10868414 Runsl_5811 Runella slithyformis DSM 19594 hypothetical protein YP_004659197.1 41870 R 761193 CDS YP_004659198.1 338215077 10868415 complement(43342..43635) 1 NC_015705.1 COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119; KEGG: pap:PSPA7_0108 hypothetical protein; PFAM: Resolvase, N-terminal; SPTR: TnpR; hypothetical protein 43635 10868415 Runsl_5812 Runella slithyformis DSM 19594 hypothetical protein YP_004659198.1 43342 R 761193 CDS YP_004659199.1 338215078 10868416 43853..44455 1 NC_015705.1 PFAM: Resolvase, N terminal domain; Signal predicted by SignalP 3.0 HMM; IMG reference gene:2505789040_SP; Resolvase domain-containing protein 44455 10868416 Runsl_5813 Runella slithyformis DSM 19594 Resolvase domain-containing protein YP_004659199.1 43853 D 761193 CDS