-- dump date 20140620_041739 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 266117000001 SEQ_END SEQ_END NC_008148.1 3225748 3225748 DR NC_008148.1; contig end 3225748..3225748 Rubrobacter xylanophilus DSM 9941 YP_642794.1 CDS Rxyl_0001 NC_008148.1 2 1354 D KEGG: chy:CHY_2710 chromosomal replication initiation protein; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator, DnaA-like Chromosomal replication initiator, DnaA; SMART: ATPase; chromosomal replication initiator protein DnaA 2..1354 Rubrobacter xylanophilus DSM 9941 4116151 YP_642795.1 CDS Rxyl_0002 NC_008148.1 1853 2980 D KEGG: chy:CHY_2709 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; DNA polymerase III subunit beta 1853..2980 Rubrobacter xylanophilus DSM 9941 4116152 YP_642796.1 CDS Rxyl_0003 NC_008148.1 2980 3174 D PFAM: RNA-binding S4; KEGG: gme:Gmet_0098 RNA-binding S4; RNA-binding S4 2980..3174 Rubrobacter xylanophilus DSM 9941 4115662 YP_642797.1 CDS Rxyl_0004 NC_008148.1 3171 4295 D TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC protein-like; KEGG: oih:OB0004 DNA repair and genetic recombination; DNA replication and repair protein RecF 3171..4295 Rubrobacter xylanophilus DSM 9941 4115663 YP_642798.1 CDS Rxyl_0005 NC_008148.1 4458 6392 D KEGG: gka:GK0005 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B-like ATP-binding region, ATPase-like TOPRIM DNA topoisomerase, type IIA, subunit B, region 2; SMART: DNA topoisomerase, type IIA, subunit B or-like; DNA gyrase subunit B 4458..6392 Rubrobacter xylanophilus DSM 9941 4115664 YP_642799.1 CDS Rxyl_0006 NC_008148.1 6385 8943 D TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A DNA gyrase C-terminal repeat, beta-propeller; KEGG: chy:CHY_2704 DNA gyrase, A subunit; DNA gyrase subunit A 6385..8943 Rubrobacter xylanophilus DSM 9941 4115665 YP_642800.1 CDS Rxyl_0007 NC_008148.1 9127 10590 D PFAM: protein of unknown function DUF88; KEGG: ade:Adeh_2817 protein of unknown function DUF88; hypothetical protein 9127..10590 Rubrobacter xylanophilus DSM 9941 4115666 YP_642801.1 CDS Rxyl_0008 NC_008148.1 10572 10850 R hypothetical protein complement(10572..10850) Rubrobacter xylanophilus DSM 9941 4115667 YP_642802.1 CDS Rxyl_0009 NC_008148.1 10952 11329 D hypothetical protein 10952..11329 Rubrobacter xylanophilus DSM 9941 4115668 YP_642803.1 CDS Rxyl_0010 NC_008148.1 11928 12626 D KEGG: sco:SCO5108 integral membrane protein; integral membrane protein 11928..12626 Rubrobacter xylanophilus DSM 9941 4115669 YP_642804.1 CDS sdhA NC_008148.1 12630 14399 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 12630..14399 Rubrobacter xylanophilus DSM 9941 4115670 YP_642805.1 CDS Rxyl_0012 NC_008148.1 14396 15214 D catalyzes the fumarate and succinate interconversion; fumarate reductase is used under anaerobic conditions with glucose or glycerol as carbon source; fumarate reductase iron-sulfur subunit 14396..15214 Rubrobacter xylanophilus DSM 9941 4115671 YP_642806.1 CDS Rxyl_0013 NC_008148.1 15373 15873 D PFAM: NUDIX hydrolase; KEGG: sth:STH2026 hypothetical protein; NUDIX hydrolase 15373..15873 Rubrobacter xylanophilus DSM 9941 4115672 YP_642807.1 CDS Rxyl_0014 NC_008148.1 15883 16452 R PFAM: flavoprotein; KEGG: ttj:TTHA1560 DNA/pantothenate metabolism flavoprotein; phosphopantothenoylcysteine decarboxylase complement(15883..16452) Rubrobacter xylanophilus DSM 9941 4115673 YP_642808.1 CDS Rxyl_0015 NC_008148.1 16487 16729 R PFAM: RDD; KEGG: sth:STH460 hypothetical protein; RDD domain-containing protein complement(16487..16729) Rubrobacter xylanophilus DSM 9941 4115674 YP_642809.1 CDS Rxyl_0016 NC_008148.1 17060 17842 D PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR Male sterility-like; KEGG: nmu:Nmul_A1489 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 17060..17842 Rubrobacter xylanophilus DSM 9941 4115675 YP_642810.1 CDS Rxyl_0017 NC_008148.1 17851 18471 D hypothetical protein 17851..18471 Rubrobacter xylanophilus DSM 9941 4115676 YP_642811.1 CDS Rxyl_0018 NC_008148.1 18428 18799 R hypothetical protein complement(18428..18799) Rubrobacter xylanophilus DSM 9941 4115677 YP_642812.1 CDS Rxyl_0019 NC_008148.1 18805 21246 R PFAM: beta-lactamase-like RNA-metabolising metallo-beta-lactamase; KEGG: pfu:PF1405 cleavage and polyadenylation specifity factor protein; beta-lactamase-like protein complement(18805..21246) Rubrobacter xylanophilus DSM 9941 4115678 YP_642813.1 CDS Rxyl_0020 NC_008148.1 21291 21647 D hypothetical protein 21291..21647 Rubrobacter xylanophilus DSM 9941 4115679 YP_642814.1 CDS Rxyl_0021 NC_008148.1 21654 23654 R PFAM: protein kinase PASTA; SMART: Tyrosine protein kinase Serine/threonine protein kinase; KEGG: tte:TTE1500 serine/threonine protein kinase; serine/threonine protein kinase complement(21654..23654) Rubrobacter xylanophilus DSM 9941 4115680 YP_642815.1 CDS Rxyl_0022 NC_008148.1 23672 25186 R PFAM: penicillin-binding protein, transpeptidase; KEGG: tte:TTE1967 cell division protein FtsI/penicillin-binding protein 2; peptidoglycan glycosyltransferase complement(23672..25186) Rubrobacter xylanophilus DSM 9941 4115681 YP_642816.1 CDS Rxyl_0023 NC_008148.1 25183 26472 R PFAM: cell cycle protein; KEGG: mbo:Mb0017c probable cell division protein RodA; cell cycle protein complement(25183..26472) Rubrobacter xylanophilus DSM 9941 4117848 YP_642817.1 CDS Rxyl_0024 NC_008148.1 26479 27624 R PFAM: protein phosphatase 2C-like; KEGG: ade:Adeh_3691 serine/threonine phosphatase; protein serine/threonine phosphatase-like protein complement(26479..27624) Rubrobacter xylanophilus DSM 9941 4117849 YP_642818.1 CDS Rxyl_0025 NC_008148.1 27627 28094 R PFAM: Forkhead-associated; KEGG: fra:Francci3_4431 FHA domain containing protein; FHA domain-containing protein complement(27627..28094) Rubrobacter xylanophilus DSM 9941 4117850 YP_642819.1 CDS Rxyl_0026 NC_008148.1 28099 28941 R PFAM: Forkhead-associated; KEGG: tfu:Tfu_3060 FHA domain protein; FHA domain-containing protein complement(28099..28941) Rubrobacter xylanophilus DSM 9941 4117851 YP_642820.1 CDS Rxyl_0027 NC_008148.1 28951 30540 R PFAM: protein kinase; SMART: Tyrosine protein kinase Serine/threonine protein kinase; KEGG: nfa:nfa31920 putative serine/threonine protein kinase; serine/threonine protein kinase complement(28951..30540) Rubrobacter xylanophilus DSM 9941 4117852 YP_642821.1 CDS Rxyl_0028 NC_008148.1 30831 31817 D hypothetical protein 30831..31817 Rubrobacter xylanophilus DSM 9941 4117853 YP_642822.1 CDS Rxyl_0029 NC_008148.1 31839 32123 D PFAM: regulatory proteins, AsnC/Lrp; KEGG: sma:SAV6058 putative transcriptional regulator; AsnC family transcriptional regulator 31839..32123 Rubrobacter xylanophilus DSM 9941 4117854 YP_642823.1 CDS Rxyl_0030 NC_008148.1 32128 33258 R ATP-dependent carboxylate-amine ligase; carboxylate-amine ligase complement(32128..33258) Rubrobacter xylanophilus DSM 9941 4117855 YP_642824.1 CDS Rxyl_0031 NC_008148.1 33290 33895 R PFAM: Redoxin Thioredoxin domain; KEGG: sth:STH734 cytochrome c biogenesis protein; redoxin complement(33290..33895) Rubrobacter xylanophilus DSM 9941 4117856 YP_642825.1 CDS Rxyl_0032 NC_008148.1 34015 34470 D PFAM: DoxX; KEGG: fra:Francci3_0914 DoxX; DoxX protein 34015..34470 Rubrobacter xylanophilus DSM 9941 4117857 YP_642826.1 CDS Rxyl_0033 NC_008148.1 34412 35284 R PFAM: alpha/beta hydrolase fold; KEGG: hma:rrnAC2881 hypothetical protein; alpha/beta hydrolase fold protein domain-containing protein complement(34412..35284) Rubrobacter xylanophilus DSM 9941 4117858 YP_642827.1 CDS Rxyl_0034 NC_008148.1 35295 37067 R TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region, ATPase-like DNA mismatch repair protein-like; KEGG: sth:STH1748 DNA mismatch repair protein; DNA mismatch repair protein MutL complement(35295..37067) Rubrobacter xylanophilus DSM 9941 4117859 YP_642828.1 CDS Rxyl_0035 NC_008148.1 37137 37619 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment; KEGG: ava:Ava_2314 acetyl-CoA biotin carboxyl carrier; biotin carboxyl carrier protein 37137..37619 Rubrobacter xylanophilus DSM 9941 4117860 YP_642829.1 CDS Rxyl_0036 NC_008148.1 37623 39014 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: phosphoribosylglycinamide synthetase ATP-dependent carboxylate-amine ligase-like, ATP-grasp protein of unknown function DUF201 Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain-like biotin carboxylase-like; KEGG: hin:HI0972 biotin carboxylase; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha/biotin carboxylase 37623..39014 Rubrobacter xylanophilus DSM 9941 4117861 YP_642830.1 CDS Rxyl_0037 NC_008148.1 39047 39886 D KEGG: sth:STH72 hypothetical protein; metal-dependent enzyme-like protein 39047..39886 Rubrobacter xylanophilus DSM 9941 4117862 YP_642831.1 CDS Rxyl_0038 NC_008148.1 39883 40782 R KEGG: mma:MM3004 hypothetical protein; hypothetical protein complement(39883..40782) Rubrobacter xylanophilus DSM 9941 4117863 YP_642832.1 CDS Rxyl_0039 NC_008148.1 40779 42215 R PFAM: protein of unknown function DUF407; KEGG: fra:Francci3_2911 enzymatic protein of unknown function; hypothetical protein complement(40779..42215) Rubrobacter xylanophilus DSM 9941 4117864 YP_642833.1 CDS Rxyl_0040 NC_008148.1 42266 42988 D PFAM: DnaD and phage-associated region; KEGG: ctc:CTC02142 hypothetical protein; DnaD and phage-associated region 42266..42988 Rubrobacter xylanophilus DSM 9941 4117865 YP_642834.1 CDS Rxyl_0041 NC_008148.1 43068 43793 D PFAM: IstB-like ATP-binding protein; SMART: ATPase; KEGG: bat:BAS3827 hypothetical protein; hypothetical protein 43068..43793 Rubrobacter xylanophilus DSM 9941 4117866 YP_642835.1 CDS Rxyl_0042 NC_008148.1 43790 44395 D hypothetical protein 43790..44395 Rubrobacter xylanophilus DSM 9941 4117731 YP_642836.1 CDS Rxyl_0043 NC_008148.1 44402 45193 D PFAM: protein of unknown function DUF1624; KEGG: mma:MM1197 hypothetical protein; hypothetical protein 44402..45193 Rubrobacter xylanophilus DSM 9941 4117732 YP_642837.1 CDS Rxyl_0044 NC_008148.1 45190 46065 D PFAM: beta-lactamase-like; KEGG: mta:Moth_1254 beta-lactamase-like; beta-lactamase-like protein 45190..46065 Rubrobacter xylanophilus DSM 9941 4117733 YP_642838.1 CDS Rxyl_0045 NC_008148.1 46145 46570 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: tde:TDE1677 single-strand binding protein; single-strand binding protein 46145..46570 Rubrobacter xylanophilus DSM 9941 4117734 YP_642839.1 CDS Rxyl_0046 NC_008148.1 46567 47430 R KEGG: sma:SAV1785 hypothetical protein; hypothetical protein complement(46567..47430) Rubrobacter xylanophilus DSM 9941 4117735 YP_642840.1 CDS Rxyl_0047 NC_008148.1 47427 48221 R PFAM: regulatory protein, MerR; KEGG: sma:SAV1786 putative MerR-family transcriptional regulator; MerR family transcriptional regulator complement(47427..48221) Rubrobacter xylanophilus DSM 9941 4117736 YP_642841.1 CDS Rxyl_0048 NC_008148.1 48394 49491 D catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; transaldolase 48394..49491 Rubrobacter xylanophilus DSM 9941 4117737 YP_642842.1 CDS Rxyl_0049 NC_008148.1 49520 51400 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 49520..51400 Rubrobacter xylanophilus DSM 9941 4117738 YP_642843.1 CDS Rxyl_0050 NC_008148.1 51418 52335 D similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 51418..52335 Rubrobacter xylanophilus DSM 9941 4117739 YP_642844.1 CDS Rxyl_0051 NC_008148.1 52332 53864 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 52332..53864 Rubrobacter xylanophilus DSM 9941 4117740 YP_642845.1 CDS Rxyl_0052 NC_008148.1 53861 54931 D KEGG: gvi:glr3179 unknown protein; glucose-6-phosphate dehydrogenase 53861..54931 Rubrobacter xylanophilus DSM 9941 4117741 YP_642846.1 CDS Rxyl_0053 NC_008148.1 54928 55656 D TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: ade:Adeh_1440 6-phosphogluconolactonase; 6-phosphogluconolactonase 54928..55656 Rubrobacter xylanophilus DSM 9941 4117742 YP_642847.1 CDS Rxyl_0054 NC_008148.1 55741 56289 D hypothetical protein 55741..56289 Rubrobacter xylanophilus DSM 9941 4117743 YP_642848.1 CDS Rxyl_0055 NC_008148.1 56429 57478 R PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: mlo:mll9007 hypothetical protein; NAD-dependent epimerase/dehydratase complement(56429..57478) Rubrobacter xylanophilus DSM 9941 4117744 YP_642849.1 CDS Rxyl_0056 NC_008148.1 57615 58604 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: gsu:GSU0573 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase GroES-like protein 57615..58604 Rubrobacter xylanophilus DSM 9941 4117745 YP_642850.1 CDS Rxyl_0057 NC_008148.1 58656 59624 D TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like; KEGG: tfu:Tfu_1428 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 58656..59624 Rubrobacter xylanophilus DSM 9941 4117746 YP_642851.1 CDS Rxyl_0058 NC_008148.1 59615 60397 D PFAM: biotin/lipoate A/B protein ligase; KEGG: hma:rrnAC2235 hypothetical protein; biotin/lipoate A/B protein ligase 59615..60397 Rubrobacter xylanophilus DSM 9941 4117747 YP_642852.1 CDS Rxyl_0059 NC_008148.1 60430 61908 D PFAM: ABC-2 type transporter; KEGG: afu:AF1005 putative ABC-2 type transport system permease protein; ABC transporter 60430..61908 Rubrobacter xylanophilus DSM 9941 4117748 YP_642853.1 CDS Rxyl_0060 NC_008148.1 61914 62852 D PFAM: ABC transporter related; SMART: ATPase; KEGG: gme:Gmet_0657 ABC transporter-related protein; ABC transporter-like protein 61914..62852 Rubrobacter xylanophilus DSM 9941 4117749 YP_642854.1 CDS Rxyl_0061 NC_008148.1 62882 64033 D PFAM: protein of unknown function UPF0118; KEGG: bce:BC4385 hypothetical membrane spanning protein; hypothetical protein 62882..64033 Rubrobacter xylanophilus DSM 9941 4117750 YP_642855.1 CDS Rxyl_0062 NC_008148.1 64030 65340 R PFAM: extracellular solute-binding protein, family 1; KEGG: gka:GK2123 ABC transporter (substrate-binding protein); extracellular solute-binding protein complement(64030..65340) Rubrobacter xylanophilus DSM 9941 4117906 YP_642856.1 CDS Rxyl_0063 NC_008148.1 65491 66288 D PFAM: Abortive infection protein; KEGG: ava:Ava_C0096 hypothetical protein; abortive infection protein 65491..66288 Rubrobacter xylanophilus DSM 9941 4117907 YP_642857.1 CDS Rxyl_0064 NC_008148.1 66314 67048 D hypothetical protein 66314..67048 Rubrobacter xylanophilus DSM 9941 4117908 YP_642858.1 CDS Rxyl_0065 NC_008148.1 67084 67470 D PFAM: regulatory protein GntR, HTH; KEGG: bha:BH1164 transcriptional regulator (GntR family); GntR family transcriptional regulator 67084..67470 Rubrobacter xylanophilus DSM 9941 4117909 YP_642859.1 CDS Rxyl_0066 NC_008148.1 67457 68383 D PFAM: ABC transporter related; SMART: ATPase; KEGG: mta:Moth_1164 ABC transporter related; ABC transporter-like protein 67457..68383 Rubrobacter xylanophilus DSM 9941 4117910 YP_642860.1 CDS Rxyl_0067 NC_008148.1 68373 69221 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00567 probable sugar ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(68373..69221) Rubrobacter xylanophilus DSM 9941 4117911 YP_642861.1 CDS Rxyl_0068 NC_008148.1 69223 70143 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00566 putative sugar ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(69223..70143) Rubrobacter xylanophilus DSM 9941 4117912 YP_642862.1 CDS Rxyl_0069 NC_008148.1 70158 71456 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 1; KEGG: ret:RHE_PF00565 putative sugar ABC transporter, substrate-binding protein; twin-arginine translocation pathway signal protein complement(70158..71456) Rubrobacter xylanophilus DSM 9941 4117913 YP_642863.1 CDS Rxyl_0070 NC_008148.1 71453 74266 R PFAM: glycoside hydrolase, family 38 glycosyl hydrolases 38-like; KEGG: cpe:CPE1415 putative alpha-mannosidase; glycoside hydrolase family protein complement(71453..74266) Rubrobacter xylanophilus DSM 9941 4117914 YP_642864.1 CDS Rxyl_0071 NC_008148.1 74263 74601 R hypothetical protein complement(74263..74601) Rubrobacter xylanophilus DSM 9941 4117915 YP_642865.1 CDS Rxyl_0072 NC_008148.1 75249 76313 R catalyzes the formation of succinate and diaminoheptanedioate from succinyldiaminoheptanedioate; succinyl-diaminopimelate desuccinylase complement(75249..76313) Rubrobacter xylanophilus DSM 9941 4117916 YP_642866.1 CDS dapD NC_008148.1 76310 77119 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(76310..77119) Rubrobacter xylanophilus DSM 9941 4117917 YP_642867.1 CDS Rxyl_0074 NC_008148.1 77177 78394 R PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase aminotransferase, class I and II; KEGG: ade:Adeh_3830 aminotransferase, class I and II; aminotransferase complement(77177..78394) Rubrobacter xylanophilus DSM 9941 4117918 YP_642868.1 CDS Rxyl_0075 NC_008148.1 78454 79704 D TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: gsu:GSU0158 diaminopimelate decarboxylase; diaminopimelate decarboxylase 78454..79704 Rubrobacter xylanophilus DSM 9941 4117919 YP_642869.1 CDS Rxyl_0076 NC_008148.1 79822 81174 D PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: bja:bll0889 putative transport protein; major facilitator transporter 79822..81174 Rubrobacter xylanophilus DSM 9941 4117920 YP_642870.1 CDS Rxyl_0077 NC_008148.1 81175 81921 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB1748 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 81175..81921 Rubrobacter xylanophilus DSM 9941 4117921 YP_642871.1 CDS Rxyl_0078 NC_008148.1 81997 82953 D PFAM: PfkB; KEGG: bcl:ABC3352 2-keto-3-deoxygluconate kinase; PfkB protein 81997..82953 Rubrobacter xylanophilus DSM 9941 4117922 YP_642872.1 CDS Rxyl_0079 NC_008148.1 82982 83638 D KEGG: bld:BLi03826 2-keto-3-deoxygluconate-6-phosphate aldolase; RBL01576; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; 2-keto-3-deoxy-phosphogluconate aldolase 82982..83638 Rubrobacter xylanophilus DSM 9941 4117923 YP_642873.1 CDS Rxyl_0080 NC_008148.1 83635 84480 D Converts D-mannonate to D-mannuronate; D-mannonate oxidoreductase 83635..84480 Rubrobacter xylanophilus DSM 9941 4117924 YP_642874.1 CDS Rxyl_0081 NC_008148.1 84572 86173 D PFAM: regulatory protein GntR, HTH periplasmic binding protein/LacI transcriptional regulator; KEGG: mta:Moth_2024 transcriptional regulator, LacI family; GntR family transcriptional regulator 84572..86173 Rubrobacter xylanophilus DSM 9941 4117653 YP_642875.1 CDS Rxyl_0082 NC_008148.1 86181 86675 R PFAM: TQO small subunit DoxD; KEGG: oih:OB3081 hypothetical protein; TQO small subunit DoxD complement(86181..86675) Rubrobacter xylanophilus DSM 9941 4117654 YP_642876.1 CDS Rxyl_0083 NC_008148.1 86899 87915 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: multicopper oxidase, type 2 multicopper oxidase, type 3; KEGG: nfa:pnf1600 putative copper oxidase; twin-arginine translocation pathway signal protein 86899..87915 Rubrobacter xylanophilus DSM 9941 4117655 YP_642877.1 CDS Rxyl_0084 NC_008148.1 87919 89103 D KEGG: nfa:pnf1610 putative metal cation transporter; putative metal cation transporter 87919..89103 Rubrobacter xylanophilus DSM 9941 4117656 YP_642878.1 CDS Rxyl_0085 NC_008148.1 89169 89648 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Rieske [2Fe-2S] region; KEGG: fra:Francci3_0970 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein 89169..89648 Rubrobacter xylanophilus DSM 9941 4117657 YP_642879.1 CDS Rxyl_0086 NC_008148.1 89704 90321 D KEGG: ehi:42.t00003 hypothetical protein PROSITE: ARG_RICH GLU_RICH LYS_RICH PRO_RICH SER_RICH THR_RICH; hypothetical protein 89704..90321 Rubrobacter xylanophilus DSM 9941 4117658 YP_642880.1 CDS Rxyl_0088 NC_008148.1 91359 91835 D PFAM: regulatory protein, MarR; KEGG: ttj:TTHA0953 hypothetical protein; regulatory protein MarR 91359..91835 Rubrobacter xylanophilus DSM 9941 4117659 YP_642881.1 CDS Rxyl_0089 NC_008148.1 91874 92797 D PFAM: ABC transporter related; SMART: ATPase; KEGG: tma:TM1028 putative ABC-2 type transport system ATP-binding protein; ABC transporter-like protein 91874..92797 Rubrobacter xylanophilus DSM 9941 4117660 YP_642882.1 CDS Rxyl_0090 NC_008148.1 92794 93615 D PFAM: ABC-2 type transporter; KEGG: bld:BLi00348 putative permease; RBL02584; ABC transporter 92794..93615 Rubrobacter xylanophilus DSM 9941 4117661 YP_642883.1 CDS Rxyl_0091 NC_008148.1 93650 94942 D PFAM: protein of unknown function DUF815; SMART: ATPase; KEGG: mta:Moth_2317 protein of unknown function DUF815; hypothetical protein 93650..94942 Rubrobacter xylanophilus DSM 9941 4117662 YP_642884.1 CDS Rxyl_0092 NC_008148.1 94939 95397 R PFAM: response regulator receiver; KEGG: noc:Noc_1757 response regulator receiver; response regulator receiver protein complement(94939..95397) Rubrobacter xylanophilus DSM 9941 4117663 YP_642885.1 CDS Rxyl_0093 NC_008148.1 95843 98413 D PFAM: response regulator receiver ATP-binding region, ATPase-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: sru:SRU_0095 utilizing regulatory protein TutC; multi-sensor signal transduction histidine kinase 95843..98413 Rubrobacter xylanophilus DSM 9941 4117664 YP_642886.1 CDS Rxyl_0094 NC_008148.1 98490 99158 D PFAM: regulatory protein, LuxR response regulator receiver Sigma-70, region 4 type 2; KEGG: fra:Francci3_1039 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 98490..99158 Rubrobacter xylanophilus DSM 9941 4117665 YP_642887.1 CDS Rxyl_0095 NC_008148.1 99155 99943 R PFAM: diaminopimelate epimerase; KEGG: mta:Moth_0888 diaminopimelate epimerase; diaminopimelate epimerase complement(99155..99943) Rubrobacter xylanophilus DSM 9941 4117666 YP_642888.1 CDS Rxyl_0096 NC_008148.1 100363 101145 R PFAM: dihydrodipicolinate reductase; KEGG: hch:HCH_01226 dihydrodipicolinate reductase; dihydrodipicolinate reductase complement(100363..101145) Rubrobacter xylanophilus DSM 9941 4117667 YP_642889.1 CDS Rxyl_0097 NC_008148.1 101142 102035 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(101142..102035) Rubrobacter xylanophilus DSM 9941 4117668 YP_642890.1 CDS Rxyl_0098 NC_008148.1 102028 103296 R KEGG: deh:cbdb_A1731 aspartate kinase, monofunctional class; TIGRFAM: aspartate kinase aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase amino acid-binding ACT; aspartate kinase complement(102028..103296) Rubrobacter xylanophilus DSM 9941 4117669 YP_642891.1 CDS Rxyl_0099 NC_008148.1 103337 103846 R KEGG: sco:SCO6430 hypothetical protein; hypothetical protein complement(103337..103846) Rubrobacter xylanophilus DSM 9941 4117670 YP_642892.1 CDS Rxyl_0100 NC_008148.1 104425 105876 D KEGG: cef:CE1659 hypothetical protein; hypothetical protein 104425..105876 Rubrobacter xylanophilus DSM 9941 4117671 YP_642893.1 CDS Rxyl_0101 NC_008148.1 105879 106856 R PFAM: Abortive infection protein; KEGG: hma:rrnAC2913 hypothetical protein; abortive infection protein complement(105879..106856) Rubrobacter xylanophilus DSM 9941 4117672 YP_642894.1 CDS Rxyl_0103 NC_008148.1 107722 109641 D PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: gsu:GSU2388 sensory box histidine kinase; PAS/PAC sensor signal transduction histidine kinase 107722..109641 Rubrobacter xylanophilus DSM 9941 4117770 YP_642895.1 CDS Rxyl_0104 NC_008148.1 109681 110130 D PFAM: UspA; KEGG: bte:BTH_II1567 universal stress protein family; hypothetical protein 109681..110130 Rubrobacter xylanophilus DSM 9941 4117771 YP_642896.1 CDS Rxyl_0105 NC_008148.1 110258 111226 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 110258..111226 Rubrobacter xylanophilus DSM 9941 4117772 YP_642897.1 CDS Rxyl_0106 NC_008148.1 111226 112101 D KEGG: gsu:GSU1936 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 111226..112101 Rubrobacter xylanophilus DSM 9941 4117773 YP_642898.1 CDS Rxyl_0107 NC_008148.1 112095 113561 D KEGG: ade:Adeh_3566 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like HI0933-like protein FAD dependent oxidoreductase FAD-dependent pyridine nucleotide-disulphide oxidoreductase; L-aspartate oxidase 112095..113561 Rubrobacter xylanophilus DSM 9941 4117774 YP_642899.1 CDS Rxyl_0108 NC_008148.1 113558 113785 D hypothetical protein 113558..113785 Rubrobacter xylanophilus DSM 9941 4117775 YP_642900.1 CDS Rxyl_0109 NC_008148.1 113800 114957 D PFAM: aminotransferase, class V aromatic amino acid beta-eliminating lyase/threonine aldolase Pyridoxal-dependent decarboxylase; KEGG: ade:Adeh_0592 aminotransferase, class V; class V aminotransferase 113800..114957 Rubrobacter xylanophilus DSM 9941 4117776 YP_642901.1 CDS Rxyl_0110 NC_008148.1 114954 115706 R PFAM: high-affinity nickel-transporter; KEGG: rpa:RPA1656 possible urease accessory protein; high-affinity nickel-transporter complement(114954..115706) Rubrobacter xylanophilus DSM 9941 4117777 YP_642902.1 CDS Rxyl_0111 NC_008148.1 116061 116546 D PFAM: ferredoxin [2Fe-2S]-binding; KEGG: sso:SSO2433 Carbon monoxide dehydrogenase, small chain; (2Fe-2S)-binding protein 116061..116546 Rubrobacter xylanophilus DSM 9941 4117778 YP_642903.1 CDS Rxyl_0112 NC_008148.1 116563 119007 D PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: ape:APE2216 putative carbon monoxide dehydrogenase; xanthine dehydrogenase, molybdenum binding subunit apoprotein 116563..119007 Rubrobacter xylanophilus DSM 9941 4117779 YP_642904.1 CDS Rxyl_0113 NC_008148.1 119004 119855 D PFAM: molybdopterin dehydrogenase, FAD-binding CO dehydrogenase flavoprotein-like; KEGG: ape:APE2219 292aa long hypothetical nicotine dehydrogenase chain A; molybdopterin dehydrogenase protein 119004..119855 Rubrobacter xylanophilus DSM 9941 4117780 YP_642905.1 CDS Rxyl_0114 NC_008148.1 119852 120796 D PFAM: ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: rru:Rru_A0968 ATPase associated with various cellular activities, AAA_5; ATPase 119852..120796 Rubrobacter xylanophilus DSM 9941 4117781 YP_642906.1 CDS Rxyl_0115 NC_008148.1 120789 121931 D PFAM: VWA containing CoxE-like; SMART: von Willebrand factor, type A; KEGG: mlo:mlr0089 hypothetical protein; VWA containing CoxE-like protein 120789..121931 Rubrobacter xylanophilus DSM 9941 4117782 YP_642907.1 CDS Rxyl_0116 NC_008148.1 121996 122310 D PFAM: protein of unknown function DUF182; KEGG: ade:Adeh_3104 protein of unknown function DUF182; sulfurylase small subunit, molybdopterin cytosine dinucleotide biosynthesis 121996..122310 Rubrobacter xylanophilus DSM 9941 4117783 YP_642908.1 CDS Rxyl_0117 NC_008148.1 122313 123113 D PFAM: protein of unknown function DUF182; KEGG: sma:SAV7506 putative xanthine dehydrogenase; sulfurylase large subunit, molybdopterin cytosine dinucleotide biosynthesis 122313..123113 Rubrobacter xylanophilus DSM 9941 4117784 YP_642909.1 CDS Rxyl_0118 NC_008148.1 123110 123733 D PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: sco:SCO6244 hypothetical protein; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase 123110..123733 Rubrobacter xylanophilus DSM 9941 4117785 YP_642910.1 CDS Rxyl_0119 NC_008148.1 123730 124173 D PFAM: carbon monoxide dehydrogenase subunit G; KEGG: mtc:MT0384.1 hypothetical protein; carbon monoxide dehydrogenase subunit G 123730..124173 Rubrobacter xylanophilus DSM 9941 4117786 YP_642911.1 CDS Rxyl_0120 NC_008148.1 124189 124827 D PFAM: carbon monoxide dehydrogenase subunit G; KEGG: mtc:MT0384.1 hypothetical protein; carbon monoxide dehydrogenase subunit G 124189..124827 Rubrobacter xylanophilus DSM 9941 4117787 YP_642912.1 CDS Rxyl_0121 NC_008148.1 124829 125464 R PFAM: protein of unknown function DUF305; KEGG: ana:all7633 hypothetical protein; hypothetical protein complement(124829..125464) Rubrobacter xylanophilus DSM 9941 4117788 YP_642913.1 CDS Rxyl_0122 NC_008148.1 125905 126576 R PFAM: UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: tfu:Tfu_0735 ubiquinone/menaquinone biosynthesis methyltransferase; phosphatidylethanolamine N-methyltransferase/phosphatidyl-N-methylethanolamine N-methyltransferase complement(125905..126576) Rubrobacter xylanophilus DSM 9941 4117692 YP_642914.1 CDS Rxyl_0123 NC_008148.1 126573 127988 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: cte:CT0776 NADH dehydrogenase I subunit 2; NADH dehydrogenase (quinone) complement(126573..127988) Rubrobacter xylanophilus DSM 9941 4117693 YP_642915.1 CDS Rxyl_0124 NC_008148.1 127985 129448 R KEGG: gsu:GSU3430 NADH dehydrogenase I, M subunit; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M complement(127985..129448) Rubrobacter xylanophilus DSM 9941 4117694 YP_642916.1 CDS Rxyl_0125 NC_008148.1 129465 131288 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: deh:cbdb_A883 proton-translocating NADH-quinone oxidoreductase, L subunit; NADH dehydrogenase (quinone) complement(129465..131288) Rubrobacter xylanophilus DSM 9941 4117695 YP_642917.1 CDS Rxyl_0126 NC_008148.1 131285 131590 R PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: noc:Noc_0477 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase subunit 4L complement(131285..131590) Rubrobacter xylanophilus DSM 9941 4117696 YP_642918.1 CDS Rxyl_0127 NC_008148.1 131590 132096 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: reu:Reut_A0970 NADH dehydrogenase (quinone); NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 complement(131590..132096) Rubrobacter xylanophilus DSM 9941 4117697 YP_642919.1 CDS Rxyl_0128 NC_008148.1 132093 133004 R PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: pca:Pcar_0210 NADH dehydrogenase I, H subunit; respiratory-chain NADH dehydrogenase subunit 1 complement(132093..133004) Rubrobacter xylanophilus DSM 9941 4117698 YP_642920.1 CDS Rxyl_0129 NC_008148.1 132986 134608 R KEGG: mhu:Mhun_1745 NADH-ubiquinone oxidoreductase, chain 49kDa; Ni Fe-hydrogenase III large subunit-like protein complement(132986..134608) Rubrobacter xylanophilus DSM 9941 4117699 YP_642921.1 CDS Rxyl_0130 NC_008148.1 134605 134967 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: mta:Moth_0977 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 complement(134605..134967) Rubrobacter xylanophilus DSM 9941 4117700 YP_642922.1 CDS Rxyl_0131 NC_008148.1 134964 135176 R PFAM: Heavy metal transport/detoxification protein; KEGG: gka:GK0903 mercuric ion-binding protein; heavy metal transport/detoxification protein complement(134964..135176) Rubrobacter xylanophilus DSM 9941 4117701 YP_642923.1 CDS Rxyl_0132 NC_008148.1 135187 135513 R PFAM: protein of unknown function DUF156; KEGG: cef:CE0406 hypothetical protein; hypothetical protein complement(135187..135513) Rubrobacter xylanophilus DSM 9941 4117702 YP_642924.1 CDS Rxyl_0133 NC_008148.1 135515 137770 R TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter ATPase, P type cation/copper-transporter Heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase Heavy metal transport/detoxification protein E1-E2 ATPase-associated region; KEGG: ana:alr7635 cation-transporting ATPase; P type cation/copper-transporter ATPase complement(135515..137770) Rubrobacter xylanophilus DSM 9941 4117703 YP_642925.1 CDS Rxyl_0134 NC_008148.1 138048 138983 R PFAM: metallophosphoesterase; KEGG: noc:Noc_1260 metallophosphoesterase; metallophosphoesterase complement(138048..138983) Rubrobacter xylanophilus DSM 9941 4117704 YP_642926.1 CDS Rxyl_0135 NC_008148.1 139026 139823 R PFAM: alpha/beta hydrolase fold; KEGG: ttj:TTHA1738 probable hydrolase; alpha/beta hydrolase fold protein domain-containing protein complement(139026..139823) Rubrobacter xylanophilus DSM 9941 4117705 YP_642927.1 CDS Rxyl_0136 NC_008148.1 139908 141398 R PFAM: regulatory protein GntR, HTH aminotransferase, class I and II; KEGG: mag:amb1376 transcriptional regulator; GntR family transcriptional regulator complement(139908..141398) Rubrobacter xylanophilus DSM 9941 4117706 YP_642928.1 CDS Rxyl_0137 NC_008148.1 141696 142700 D PFAM: sugar isomerase (SIS); KEGG: pfu:PF0157 glucosamine-fructose-6-phosphate aminotransferase (isomerizing); glutamine-fructose-6-phosphate transaminase 141696..142700 Rubrobacter xylanophilus DSM 9941 4117707 YP_642929.1 CDS Rxyl_0138 NC_008148.1 142697 143575 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: tte:TTE0639 permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 142697..143575 Rubrobacter xylanophilus DSM 9941 4117708 YP_642930.1 CDS Rxyl_0139 NC_008148.1 143618 144934 R KEGG: ade:Adeh_0244 LigA; LigA complement(143618..144934) Rubrobacter xylanophilus DSM 9941 4117709 YP_642931.1 CDS Rxyl_0140 NC_008148.1 145174 145704 D PFAM: regulatory protein, TetR; KEGG: mpa:MAP0794 hypothetical protein; TetR family transcriptional regulator 145174..145704 Rubrobacter xylanophilus DSM 9941 4117710 YP_642932.1 CDS Rxyl_0141 NC_008148.1 146058 146702 D PFAM: isochorismatase hydrolase; KEGG: ape:APE2350 isochorismatase; isochorismatase hydrolase 146058..146702 Rubrobacter xylanophilus DSM 9941 4117711 YP_642933.1 CDS Rxyl_0142 NC_008148.1 146784 147224 D PFAM: OsmC-like protein; KEGG: sco:SCO6531 putative ATP/GTP binding protein; OsmC-like protein 146784..147224 Rubrobacter xylanophilus DSM 9941 4117789 YP_642934.1 CDS Rxyl_0143 NC_008148.1 147289 148863 R TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: gka:GK0928 sodium:solute symporter; SSS family solute/sodium (Na+) symporter complement(147289..148863) Rubrobacter xylanophilus DSM 9941 4117790 YP_642935.1 CDS Rxyl_0144 NC_008148.1 148866 149180 R PFAM: protein of unknown function DUF485; KEGG: oih:OB2443 hypothetical protein; hypothetical protein complement(148866..149180) Rubrobacter xylanophilus DSM 9941 4117791 YP_642936.1 CDS Rxyl_0145 NC_008148.1 149450 150319 R TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase, subunit FdhD; KEGG: sco:SCO6558 putative protein associated with oxidoreductase activity; formate dehydrogenase family accessory protein FdhD complement(149450..150319) Rubrobacter xylanophilus DSM 9941 4117792 YP_642937.1 CDS Rxyl_0146 NC_008148.1 150323 152593 R TIGRFAM: Oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region; KEGG: ttj:TTHB197 probable formate dehydrogenase; oxidoreductase alpha (molybdopterin) subunit complement(150323..152593) Rubrobacter xylanophilus DSM 9941 4117793 YP_642938.1 CDS Rxyl_0147 NC_008148.1 152969 154141 R PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: sco:SCO4055 alcohol dehydrogenase; alcohol dehydrogenase GroES-like protein complement(152969..154141) Rubrobacter xylanophilus DSM 9941 4117794 YP_642939.1 CDS Rxyl_0148 NC_008148.1 154381 154773 R PFAM: Cupin 2, conserved barrel; KEGG: nwi:Nwi_1500 cupin region; cupin 2 barrel domain-containing protein complement(154381..154773) Rubrobacter xylanophilus DSM 9941 4117795 YP_642940.1 CDS Rxyl_0149 NC_008148.1 154840 156525 R KEGG: gvi:glr3825 hypothetical protein; hypothetical protein complement(154840..156525) Rubrobacter xylanophilus DSM 9941 4117796 YP_642941.1 CDS Rxyl_0150 NC_008148.1 156568 158163 R TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter Citrate transporter; KEGG: oih:OB2540 sodium-dependent transporter; anion transporter complement(156568..158163) Rubrobacter xylanophilus DSM 9941 4117797 YP_642942.1 CDS Rxyl_0151 NC_008148.1 158244 159074 R hypothetical protein complement(158244..159074) Rubrobacter xylanophilus DSM 9941 4117798 YP_642943.1 CDS Rxyl_0152 NC_008148.1 159172 159987 D TIGRFAM: cell envelope-related function transcriptional attenuator common domain; PFAM: cell envelope-related transcriptional attenuator; KEGG: sth:STH1893 transcriptional regulator; cell envelope-related transcriptional attenuator 159172..159987 Rubrobacter xylanophilus DSM 9941 4117799 YP_642944.1 CDS Rxyl_0153 NC_008148.1 159997 160665 R KEGG: tte:TTE0745 hypothetical protein; hypothetical protein complement(159997..160665) Rubrobacter xylanophilus DSM 9941 4117800 YP_642945.1 CDS Rxyl_0155 NC_008148.1 161064 162134 D PFAM: basic membrane lipoprotein; KEGG: sth:STH1236 sugar ABC transporter substrate-binding protein; basic membrane lipoprotein 161064..162134 Rubrobacter xylanophilus DSM 9941 4117801 YP_642946.1 CDS Rxyl_0156 NC_008148.1 162147 163703 D PFAM: ABC transporter related; SMART: ATPase; KEGG: gka:GK1284 ABC transporter (ATP-binding protein); ABC transporter-like protein 162147..163703 Rubrobacter xylanophilus DSM 9941 4117802 YP_642947.1 CDS Rxyl_0157 NC_008148.1 163700 164812 D PFAM: inner-membrane translocator; KEGG: tte:TTE0459 uncharacterized ABC-type transport system, permease component; inner-membrane translocator 163700..164812 Rubrobacter xylanophilus DSM 9941 4117803 YP_642948.1 CDS Rxyl_0158 NC_008148.1 164812 165735 D PFAM: inner-membrane translocator; KEGG: sth:STH1233 sugar ABC transporter permease; inner-membrane translocator 164812..165735 Rubrobacter xylanophilus DSM 9941 4117804 YP_642949.1 CDS Rxyl_0159 NC_008148.1 166077 167603 D PFAM: ATP-binding region, ATPase-like histidine kinase, dimerisation and phosphoacceptor region; KEGG: sco:SCO5454 two-component system sensor kinase; periplasmic sensor signal transduction histidine kinase 166077..167603 Rubrobacter xylanophilus DSM 9941 4117805 YP_642950.1 CDS Rxyl_0160 NC_008148.1 167600 168238 D PFAM: regulatory protein, LuxR response regulator receiver; KEGG: sco:SCO5455 two-component system response regulator; two component LuxR family transcriptional regulator 167600..168238 Rubrobacter xylanophilus DSM 9941 4117806 YP_642951.1 CDS Rxyl_0161 NC_008148.1 168235 168627 R hypothetical protein complement(168235..168627) Rubrobacter xylanophilus DSM 9941 4117807 YP_642952.1 CDS Rxyl_0162 NC_008148.1 168717 168950 R PFAM: helix-turn-helix motif; KEGG: det:DET0884 transcriptional repressor LexA, putative; XRE family transcriptional regulator complement(168717..168950) Rubrobacter xylanophilus DSM 9941 4117867 YP_642953.1 CDS Rxyl_0163 NC_008148.1 169065 169478 D hypothetical protein 169065..169478 Rubrobacter xylanophilus DSM 9941 4117868 YP_642954.1 CDS Rxyl_0164 NC_008148.1 169553 169960 D hypothetical protein 169553..169960 Rubrobacter xylanophilus DSM 9941 4117869 YP_642955.1 CDS Rxyl_0165 NC_008148.1 169977 170399 R TIGRFAM: SUF system FeS assembly protein; PFAM: nitrogen-fixing NifU-like-like; KEGG: lmf:LMOf2365_2383 NifU family protein; SUF system FeS assembly protein complement(169977..170399) Rubrobacter xylanophilus DSM 9941 4117870 YP_642956.1 CDS Rxyl_0166 NC_008148.1 170396 171622 R TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V aromatic amino acid beta-eliminating lyase/threonine aldolase Pyridoxal-dependent decarboxylase; KEGG: gka:GK2993 cysteine desulfurase; cysteine desulfurase complement(170396..171622) Rubrobacter xylanophilus DSM 9941 4117871 YP_642957.1 CDS Rxyl_0167 NC_008148.1 171634 171993 R PFAM: Rieske [2Fe-2S] region; KEGG: pol:Bpro_4275 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein complement(171634..171993) Rubrobacter xylanophilus DSM 9941 4117872 YP_642958.1 CDS Rxyl_0168 NC_008148.1 172002 173363 R TIGRFAM: FeS assembly protein SufD; PFAM: SufBD; KEGG: dra:DR2101 hypothetical protein; Iron-regulated ABC transporter permease SufD complement(172002..173363) Rubrobacter xylanophilus DSM 9941 4117873 YP_642959.1 CDS Rxyl_0169 NC_008148.1 173360 173815 R PFAM: UspA; KEGG: tbd:Tbd_2614 universal stress protein; hypothetical protein complement(173360..173815) Rubrobacter xylanophilus DSM 9941 4117874 YP_642960.1 CDS Rxyl_0170 NC_008148.1 173919 175331 R TIGRFAM: FeS assembly protein SufB; PFAM: SufBD; KEGG: dra:DR2106 hypothetical protein; Iron-regulated ABC transporter membrane component SufB complement(173919..175331) Rubrobacter xylanophilus DSM 9941 4117875 YP_642961.1 CDS Rxyl_0171 NC_008148.1 175342 176094 R KEGG: lin:lin2510 similar to ABC transporter, ATP-binding protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: ATPase; FeS assembly ATPase SufC complement(175342..176094) Rubrobacter xylanophilus DSM 9941 4117876 YP_642962.1 CDS Rxyl_0172 NC_008148.1 176347 177174 R PFAM: UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: hch:HCH_03658 SAM-dependent methyltransferase; type 11 methyltransferase complement(176347..177174) Rubrobacter xylanophilus DSM 9941 4117877 YP_642963.1 CDS Rxyl_0173 NC_008148.1 177174 178103 R PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: ade:Adeh_2848 LigA; glycine cleavage T protein complement(177174..178103) Rubrobacter xylanophilus DSM 9941 4117878 YP_642964.1 CDS Rxyl_0174 NC_008148.1 178156 178803 D TIGRFAM: HAD-superfamily hydrolase subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: sco:SCO0790 hydrolase; HAD family hydrolase 178156..178803 Rubrobacter xylanophilus DSM 9941 4117879 YP_642965.1 CDS Rxyl_0175 NC_008148.1 178962 179165 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: neu:NE1731 cold-shock DNA-binding domain; cold-shock DNA-binding protein family protein 178962..179165 Rubrobacter xylanophilus DSM 9941 4117880 YP_642966.1 CDS Rxyl_0176 NC_008148.1 179239 180393 R PFAM: protein of unknown function DUF111; KEGG: gsu:GSU0141 hypothetical protein; hypothetical protein complement(179239..180393) Rubrobacter xylanophilus DSM 9941 4117881 YP_642967.1 CDS Rxyl_0177 NC_008148.1 180420 180770 R hypothetical protein complement(180420..180770) Rubrobacter xylanophilus DSM 9941 4117882 YP_642968.1 CDS Rxyl_0178 NC_008148.1 180767 181216 R PFAM: protein of unknown function DUF1469; KEGG: sma:SAV6345 putative integral membrane protein; hypothetical protein complement(180767..181216) Rubrobacter xylanophilus DSM 9941 4117883 YP_642969.1 CDS Rxyl_0179 NC_008148.1 181437 182180 D KEGG: mta:Moth_2003 uncharacterized MobA-related protein-like; MobA-like protein 181437..182180 Rubrobacter xylanophilus DSM 9941 4117884 YP_642970.1 CDS Rxyl_0180 NC_008148.1 182245 183426 D KEGG: rsp:RSP_2910 predicted metal-dependent amidase/aminoacylase/carboxypeptidase; TIGRFAM: Peptidase M20D, amidohydrolase; PFAM: peptidase M20 peptidase dimerisation; peptidase M20D, amidohydrolase 182245..183426 Rubrobacter xylanophilus DSM 9941 4117885 YP_642971.1 CDS Rxyl_0181 NC_008148.1 183423 184004 R KEGG: mba:Mbar_A0937 hypothetical protein; hypothetical protein complement(183423..184004) Rubrobacter xylanophilus DSM 9941 4117886 YP_642972.1 CDS Rxyl_0182 NC_008148.1 184015 184398 R PFAM: mannose-6-phosphate isomerase, type II Cupin 2, conserved barrel; KEGG: pmm:PMM1196 GDP-mannose pyrophosphorylase; mannose-6-phosphate isomerase I complement(184015..184398) Rubrobacter xylanophilus DSM 9941 4117887 YP_642973.1 CDS Rxyl_0183 NC_008148.1 184447 185076 R hypothetical protein complement(184447..185076) Rubrobacter xylanophilus DSM 9941 4117888 YP_642974.1 CDS Rxyl_0184 NC_008148.1 185248 186081 R PFAM: protein kinase; SMART: Tyrosine protein kinase Serine/threonine protein kinase; KEGG: ade:Adeh_2796 serine/threonine protein kinase; serine/threonine protein kinase complement(185248..186081) Rubrobacter xylanophilus DSM 9941 4117889 YP_642975.1 CDS Rxyl_0185 NC_008148.1 186078 187913 R PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; KEGG: sma:SAV3872 putative ABC transporter ATP-binding protein; ABC transporter-like protein complement(186078..187913) Rubrobacter xylanophilus DSM 9941 4117890 YP_642976.1 CDS Rxyl_0186 NC_008148.1 188212 189642 R PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: gka:GK1689 two-component sensor histidine kinase; sensor signal transduction histidine kinase complement(188212..189642) Rubrobacter xylanophilus DSM 9941 4117891 YP_642977.1 CDS Rxyl_0187 NC_008148.1 189705 190388 D PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: gme:Gmet_3383 two component transcriptional regulator, winged helix family; two component transcriptional regulator 189705..190388 Rubrobacter xylanophilus DSM 9941 4117892 YP_642978.1 CDS Rxyl_0188 NC_008148.1 190385 191527 D PFAM: FAD dependent oxidoreductase; KEGG: bcl:ABC0532 glycine/D-amino acid oxidase; FAD dependent oxidoreductase 190385..191527 Rubrobacter xylanophilus DSM 9941 4117893 YP_642979.1 CDS Rxyl_0189 NC_008148.1 191530 192429 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: gsu:GSU2676 hypothetical protein; hypothetical protein 191530..192429 Rubrobacter xylanophilus DSM 9941 4117894 YP_642980.1 CDS Rxyl_0190 NC_008148.1 192426 192977 R hypothetical protein complement(192426..192977) Rubrobacter xylanophilus DSM 9941 4117895 YP_642981.1 CDS Rxyl_0191 NC_008148.1 193158 193526 D PFAM: ferredoxin; KEGG: rba:RB9190 ferredoxin; ferredoxin 193158..193526 Rubrobacter xylanophilus DSM 9941 4117896 YP_642982.1 CDS Rxyl_0192 NC_008148.1 193695 195083 D PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: nar:Saro_2404 glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein 193695..195083 Rubrobacter xylanophilus DSM 9941 4117897 YP_642983.1 CDS Rxyl_0193 NC_008148.1 195115 196359 D PFAM: Extracellular ligand-binding receptor; KEGG: bbr:BB1592 putative ABC transport system, substrate-binding protein; extracellular ligand-binding receptor 195115..196359 Rubrobacter xylanophilus DSM 9941 4117898 YP_642984.1 CDS Rxyl_0194 NC_008148.1 196379 197248 D PFAM: inner-membrane translocator; KEGG: bpa:BPP2196 putative ABC transport system, membrane protein; inner-membrane translocator 196379..197248 Rubrobacter xylanophilus DSM 9941 4117899 YP_642985.1 CDS Rxyl_0195 NC_008148.1 197245 198258 D PFAM: inner-membrane translocator; KEGG: bbr:BB1594 putative ABC transport system, membrane protein; inner-membrane translocator 197245..198258 Rubrobacter xylanophilus DSM 9941 4117900 YP_642986.1 CDS Rxyl_0196 NC_008148.1 198255 199010 D PFAM: ABC transporter related; SMART: ATPase; KEGG: bbr:BB1595 putative ABC transport system, ATP-bidning protein; ABC transporter-like protein 198255..199010 Rubrobacter xylanophilus DSM 9941 4117901 YP_642987.1 CDS Rxyl_0197 NC_008148.1 199003 199707 D PFAM: ABC transporter related; SMART: ATPase; KEGG: bja:blr1067 ABC transporter ATP-binding protein; ABC transporter-like protein 199003..199707 Rubrobacter xylanophilus DSM 9941 4117902 YP_642988.1 CDS Rxyl_0198 NC_008148.1 199713 200498 R PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: mag:amb0253 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase; 6-phosphogluconate dehydrogenase complement(199713..200498) Rubrobacter xylanophilus DSM 9941 4117903 YP_642989.1 CDS Rxyl_0199 NC_008148.1 200495 201469 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:blr3819 metapyrocatechase; catechol 2,3-dioxygenase complement(200495..201469) Rubrobacter xylanophilus DSM 9941 4117904 YP_642990.1 CDS Rxyl_0200 NC_008148.1 201466 202092 R PFAM: Dimethylmenaquinone methyltransferase; KEGG: sme:SMc00502 hypothetical protein; dimethylmenaquinone methyltransferase complement(201466..202092) Rubrobacter xylanophilus DSM 9941 4117905 YP_642991.1 CDS Rxyl_0201 NC_008148.1 202089 202808 R KEGG: yps:YPTB0079 hypothetical protein; hypothetical protein complement(202089..202808) Rubrobacter xylanophilus DSM 9941 4117828 YP_642992.1 CDS Rxyl_0202 NC_008148.1 202808 203749 R KEGG: mth:MTH1911 hypothetical protein; hypothetical protein complement(202808..203749) Rubrobacter xylanophilus DSM 9941 4117829 YP_642993.1 CDS Rxyl_0203 NC_008148.1 203836 204714 R PFAM: polysaccharide deacetylase; KEGG: pfo:Pfl_2856 polysaccharide deacetylase; polysaccharide deacetylase complement(203836..204714) Rubrobacter xylanophilus DSM 9941 4117830 YP_642994.1 CDS Rxyl_0204 NC_008148.1 204839 205720 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: mag:amb2827 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 204839..205720 Rubrobacter xylanophilus DSM 9941 4117831 YP_642995.1 CDS Rxyl_0205 NC_008148.1 205837 206664 D PFAM: intradiol ring-cleavage dioxygenase Catechol dioxygenase-like; KEGG: atc:AGR_C_4592 hypothetical protein; intradiol ring-cleavage dioxygenase 205837..206664 Rubrobacter xylanophilus DSM 9941 4117832 YP_642996.1 CDS Rxyl_0206 NC_008148.1 206674 208074 D PFAM: amidohydrolase Amidohydrolase 3; KEGG: reu:Reut_C6231 amidohydrolase:amidohydrolase-like; hypothetical protein 206674..208074 Rubrobacter xylanophilus DSM 9941 4117833 YP_642997.1 CDS Rxyl_0207 NC_008148.1 208090 209073 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bja:blr2898 putative zinc binding dehydrogenase; zinc-binding alcohol dehydrogenase 208090..209073 Rubrobacter xylanophilus DSM 9941 4117834 YP_642998.1 CDS Rxyl_0208 NC_008148.1 209161 209850 D PFAM: regulatory protein GntR, HTH GntR-like; KEGG: sma:SAV1619 putative GntR-family transcriptional regulator; GntR family transcriptional regulator 209161..209850 Rubrobacter xylanophilus DSM 9941 4117835 YP_642999.1 CDS Rxyl_0209 NC_008148.1 209961 211313 D PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: nar:Saro_2861 vanillate/3-O-methylgallate O-demethylase; glycine cleavage T protein 209961..211313 Rubrobacter xylanophilus DSM 9941 4117836 YP_643000.1 CDS Rxyl_0210 NC_008148.1 211342 211923 D KEGG: nfa:nfa21490 hypothetical protein; hypothetical protein 211342..211923 Rubrobacter xylanophilus DSM 9941 4117837 YP_643001.1 CDS Rxyl_0211 NC_008148.1 211945 212910 R PFAM: luciferase-like; KEGG: nfa:nfa43060 hypothetical protein; luciferase-like protein complement(211945..212910) Rubrobacter xylanophilus DSM 9941 4117838 YP_643002.1 CDS Rxyl_0212 NC_008148.1 212981 213508 R TIGRFAM: ATP; PFAM: regulatory protein GntR, HTH cobalamin adenosyltransferase; KEGG: bur:Bcep18194_A3822 cobalamin adenosyltransferase; ATP:cob(I)alamin adenosyltransferase complement(212981..213508) Rubrobacter xylanophilus DSM 9941 4117839 YP_643003.1 CDS Rxyl_0213 NC_008148.1 213621 214961 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 1; KEGG: bha:BH1244 putative multiple sugar transport system substrate-binding protein; twin-arginine translocation pathway signal protein 213621..214961 Rubrobacter xylanophilus DSM 9941 4117840 YP_643004.1 CDS Rxyl_0214 NC_008148.1 215006 215704 D PFAM: GCN5-related N-acetyltransferase; KEGG: sat:SYN_02355 acetyltransferase; N-acetyltransferase GCN5 215006..215704 Rubrobacter xylanophilus DSM 9941 4117841 YP_643005.1 CDS Rxyl_0215 NC_008148.1 215719 217260 D KEGG: afu:AF1297 cell division control protein 48, AAA family (cdc48-1); PFAM: AAA ATPase, central region; SMART: ATPase; vesicle-fusing ATPase 215719..217260 Rubrobacter xylanophilus DSM 9941 4117842 YP_643006.1 CDS Rxyl_0216 NC_008148.1 217457 218635 D PFAM: GCN5-related N-acetyltransferase; KEGG: bcz:BCZK2672 acetyltransferase, GNAT family; N-acetyltransferase GCN5 217457..218635 Rubrobacter xylanophilus DSM 9941 4117843 YP_643007.1 CDS Rxyl_0217 NC_008148.1 218740 219744 D PFAM: luciferase-like; KEGG: sme:SMb20100 putative dehydrogenase protein; luciferase-like protein 218740..219744 Rubrobacter xylanophilus DSM 9941 4117844 YP_643008.1 CDS Rxyl_0218 NC_008148.1 219746 220690 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: bcl:ABC3060 drug/metabolite transporter (DMT) superfamily protein; hypothetical protein 219746..220690 Rubrobacter xylanophilus DSM 9941 4117845 YP_643009.1 CDS Rxyl_0219 NC_008148.1 221052 222455 D KEGG: gka:GK1423 dihydropyrimidinase; TIGRFAM: D-hydantoinase; PFAM: amidohydrolase Amidohydrolase 3; dihydropyrimidinase 221052..222455 Rubrobacter xylanophilus DSM 9941 4117846 YP_643010.1 CDS Rxyl_0220 NC_008148.1 222452 223762 D PFAM: aminotransferase class-III; KEGG: sma:SAV1952 putative aminotransferase; aminotransferase 222452..223762 Rubrobacter xylanophilus DSM 9941 4117847 YP_643011.1 CDS Rxyl_0221 NC_008148.1 223765 225018 D KEGG: sai:Saci_2132 N-carbamoyl-L-amino acid amidohydrolase; TIGRFAM: Amidase, hydantoinase/carbamoylase; PFAM: peptidase M20; hydantoinase/carbamoylase 223765..225018 Rubrobacter xylanophilus DSM 9941 4117712 YP_643012.1 CDS Rxyl_0222 NC_008148.1 225063 226592 D TIGRFAM: NCS1 nucleoside transporter family; PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: sco:SCO6417 putative integral membrane transporter; NCS1 nucleoside transporter 225063..226592 Rubrobacter xylanophilus DSM 9941 4117713 YP_643013.1 CDS Rxyl_0223 NC_008148.1 226592 227617 D PFAM: luciferase-like; KEGG: sma:SAV1948 putative N5,N10-methylene-tetrahydromethanopterin reductase; methylenetetrahydromethanopterin reductase 226592..227617 Rubrobacter xylanophilus DSM 9941 4117714 YP_643014.1 CDS Rxyl_0224 NC_008148.1 227620 228906 D PFAM: amidohydrolase Amidohydrolase 3; KEGG: bcl:ABC4032 cytosine deaminase; N-isopropylammelide isopropylaminohydrolase 227620..228906 Rubrobacter xylanophilus DSM 9941 4117715 YP_643015.1 CDS Rxyl_0225 NC_008148.1 228998 230713 D PFAM: ABC transporter related; SMART: ATPase; KEGG: mta:Moth_0707 ABC transporter related; ABC transporter-like protein 228998..230713 Rubrobacter xylanophilus DSM 9941 4117716 YP_643016.1 CDS Rxyl_0226 NC_008148.1 230710 231498 D PFAM: cobalt transport protein; KEGG: mta:Moth_0708 cobalt transport protein; cobalt transport protein 230710..231498 Rubrobacter xylanophilus DSM 9941 4117717 YP_643017.1 CDS Rxyl_0227 NC_008148.1 231513 232361 D KEGG: mta:Moth_0709 hypothetical protein; hypothetical protein 231513..232361 Rubrobacter xylanophilus DSM 9941 4117718 YP_643018.1 CDS Rxyl_0228 NC_008148.1 232375 233643 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 232375..233643 Rubrobacter xylanophilus DSM 9941 4117719 YP_643019.1 CDS Rxyl_0229 NC_008148.1 233750 234748 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase HI0933-like protein; KEGG: mpa:MAP4339 thioredoxin reductase; thioredoxin reductase 233750..234748 Rubrobacter xylanophilus DSM 9941 4117720 YP_643020.1 CDS Rxyl_0230 NC_008148.1 235008 236717 R PFAM: PHP-like; SMART: DNA polymerase X Phosphoesterase PHP-like Helix-hairpin-helix DNA-binding, class 1; KEGG: mca:MCA1213 hypothetical protein; PHP-like protein complement(235008..236717) Rubrobacter xylanophilus DSM 9941 4117721 YP_643021.1 CDS Rxyl_0231 NC_008148.1 236802 237518 D PFAM: phosphoesterase, PA-phosphatase related; KEGG: sat:SYN_02354 phosphatidylglycerophosphatase B -like protein; PA-phosphatase-like phosphoesterase 236802..237518 Rubrobacter xylanophilus DSM 9941 4117722 YP_643022.1 CDS Rxyl_0232 NC_008148.1 237571 238944 D PFAM: phosphoesterase, PA-phosphatase related; KEGG: pca:Pcar_1019 uncharacterized membrane-associated protein-like; PA-phosphatase-like phosphoesterase 237571..238944 Rubrobacter xylanophilus DSM 9941 4117723 YP_643023.1 CDS Rxyl_0233 NC_008148.1 238976 239635 D PFAM: regulatory protein GntR, HTH GntR-like; KEGG: reu:Reut_B5875 regulatory protein GntR, HTH:GntR, C-terminal; GntR family transcriptional regulator 238976..239635 Rubrobacter xylanophilus DSM 9941 4117724 YP_643024.1 CDS Rxyl_0234 NC_008148.1 239690 241042 R PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: ypm:YP3897 putative metabolite transport protein; major facilitator transporter complement(239690..241042) Rubrobacter xylanophilus DSM 9941 4117725 YP_643025.1 CDS Rxyl_0235 NC_008148.1 241058 242137 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rpa:RPA1563 putative nitrilase; nitrilase complement(241058..242137) Rubrobacter xylanophilus DSM 9941 4117726 YP_643026.1 CDS Rxyl_0236 NC_008148.1 242203 243711 R PFAM: carboxyl transferase; KEGG: sma:SAV5722 putative acetyl CoA carboxylase beta subunit; carboxyl transferase complement(242203..243711) Rubrobacter xylanophilus DSM 9941 4117727 YP_643027.1 CDS Rxyl_0238 NC_008148.1 245063 246490 D PFAM: Amidase; KEGG: bbr:BB4983 probable amidase; amidase 245063..246490 Rubrobacter xylanophilus DSM 9941 4117728 YP_643028.1 CDS Rxyl_0239 NC_008148.1 246483 247112 R PFAM: glutathione S-transferase-like; KEGG: pae:PA2813 probable glutathione S-transferase; glutathione S-transferase-like protein complement(246483..247112) Rubrobacter xylanophilus DSM 9941 4117729 YP_643029.1 CDS Rxyl_0240 NC_008148.1 247109 247774 R PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mta:Moth_0073 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(247109..247774) Rubrobacter xylanophilus DSM 9941 4117730 YP_643030.1 CDS Rxyl_0241 NC_008148.1 247896 248894 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Uncharacterized protein UPF0065; KEGG: bja:blr4371 hypothetical protein; twin-arginine translocation pathway signal protein 247896..248894 Rubrobacter xylanophilus DSM 9941 4116072 YP_643031.1 CDS Rxyl_0242 NC_008148.1 248891 249364 D KEGG: sco:SCO1139 integral membrane protein; integral membrane protein 248891..249364 Rubrobacter xylanophilus DSM 9941 4116073 YP_643032.1 CDS Rxyl_0243 NC_008148.1 249368 250894 D PFAM: protein of unknown function DUF112, transmembrane; KEGG: bja:bll0952 hypothetical protein; hypothetical protein 249368..250894 Rubrobacter xylanophilus DSM 9941 4116074 YP_643033.1 CDS Rxyl_0244 NC_008148.1 250900 252087 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reu:Reut_A2908 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 250900..252087 Rubrobacter xylanophilus DSM 9941 4116075 YP_643034.1 CDS Rxyl_0245 NC_008148.1 252084 252866 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 252084..252866 Rubrobacter xylanophilus DSM 9941 4116076 YP_643035.1 CDS Rxyl_0246 NC_008148.1 252866 253414 D KEGG: tfu:Tfu_0193 similar to carbonic anhydrase/acetyltransferase isoleucine patch superfamily; carbonic anhydrase 252866..253414 Rubrobacter xylanophilus DSM 9941 4116077 YP_643036.1 CDS Rxyl_0247 NC_008148.1 253411 254559 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bur:Bcep18194_A4039 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 253411..254559 Rubrobacter xylanophilus DSM 9941 4116078 YP_643037.1 CDS Rxyl_0248 NC_008148.1 254588 255352 D PFAM: protein of unknown function DUF81; KEGG: tfu:Tfu_3084 conserved hypothetical membrane permease protein; hypothetical protein 254588..255352 Rubrobacter xylanophilus DSM 9941 4116079 YP_643038.1 CDS Rxyl_0249 NC_008148.1 255411 256214 D PFAM: protein of unknown function DUF81; KEGG: cef:CE0317 hypothetical protein; hypothetical protein 255411..256214 Rubrobacter xylanophilus DSM 9941 4116080 YP_643039.1 CDS Rxyl_0250 NC_008148.1 256248 256841 D KEGG: ana:alr2975 signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I 256248..256841 Rubrobacter xylanophilus DSM 9941 4116081 YP_643040.1 CDS Rxyl_0251 NC_008148.1 256838 258289 R KEGG: syf:Synpcc7942_1019 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77; amylomaltase complement(256838..258289) Rubrobacter xylanophilus DSM 9941 4116082 YP_643041.1 CDS Rxyl_0252 NC_008148.1 258292 259344 R PFAM: peptidase M20 peptidase M42; KEGG: pho:PH1527 Frv operon protein FrvX; peptidase M42 complement(258292..259344) Rubrobacter xylanophilus DSM 9941 4116083 YP_643042.1 CDS Rxyl_0253 NC_008148.1 259502 259987 D KEGG: bld:BLi00693 phosphoribosylaminoimidazole carboxylase I; RBL03724; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 259502..259987 Rubrobacter xylanophilus DSM 9941 4116084 YP_643043.1 CDS Rxyl_0254 NC_008148.1 259984 261150 D TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: phosphoribosylglycinamide synthetase ATP-dependent carboxylate-amine ligase-like, ATP-grasp protein of unknown function DUF201; KEGG: gka:GK0258 phosphoribosylaminoimidazole carboxylasecarbon dioxide-fixation chain; phosphoribosylaminoimidazole carboxylase 259984..261150 Rubrobacter xylanophilus DSM 9941 4116085 YP_643044.1 CDS Rxyl_0255 NC_008148.1 261195 262205 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: lic:LIC10958 alcohol dehydrogenase; zinc-binding alcohol dehydrogenase 261195..262205 Rubrobacter xylanophilus DSM 9941 4116086 YP_643045.1 CDS Rxyl_0256 NC_008148.1 263398 263667 R PFAM: protein of unknown function DUF196; KEGG: tma:TM1796 hypothetical protein; CRISPR-associated Cas2 family protein complement(263398..263667) Rubrobacter xylanophilus DSM 9941 4116087 YP_643046.1 CDS Rxyl_0257 NC_008148.1 263671 264666 R TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: chy:CHY_2152 CRISPR-associated protein Cas1; CRISPR-associated Cas1 family protein complement(263671..264666) Rubrobacter xylanophilus DSM 9941 4116088 YP_643047.1 CDS Rxyl_0258 NC_008148.1 264673 265794 R TIGRFAM: CRISPR-associated protein APE2256; KEGG: chy:CHY_2123 putative CRISPR-associated protein; CRISPR-associated family protein complement(264673..265794) Rubrobacter xylanophilus DSM 9941 4116089 YP_643048.1 CDS Rxyl_0259 NC_008148.1 265787 267004 R TIGRFAM: CRISPR-associated protein, TM1791; PFAM: protein of unknown function DUF324; KEGG: tma:TM1791 hypothetical protein; CRISPR-associated RAMP Cmr6 family protein complement(265787..267004) Rubrobacter xylanophilus DSM 9941 4116090 YP_643049.1 CDS Rxyl_0260 NC_008148.1 267001 267426 R TIGRFAM: CRISPR-associated protein, TM1791.1; KEGG: afu:AF1862 hypothetical protein; CRISPR-associated Cmr5 family protein complement(267001..267426) Rubrobacter xylanophilus DSM 9941 4116091 YP_643050.1 CDS Rxyl_0261 NC_008148.1 267426 268226 R TIGRFAM: CRISPR-associated RAMP Cmr4; PFAM: protein of unknown function DUF324; KEGG: pfu:PF1126 hypothetical protein; CRISPR-associated RAMP Cmr4 family protein family protein complement(267426..268226) Rubrobacter xylanophilus DSM 9941 4117751 YP_643051.1 CDS Rxyl_0262 NC_008148.1 268235 269317 R KEGG: tth:TT_P0116 hypothetical protein; hypothetical protein complement(268235..269317) Rubrobacter xylanophilus DSM 9941 4117752 YP_643052.1 CDS Rxyl_0263 NC_008148.1 269314 271203 R TIGRFAM: CRISPR-associated protein Crm2; KEGG: tte:TTE2639 predicted hydrolase of the HD superfamily (permuted catalytic motifs); CRISPR-associated Cmr2 family protein complement(269314..271203) Rubrobacter xylanophilus DSM 9941 4117753 YP_643053.1 CDS Rxyl_0264 NC_008148.1 271200 272342 R TIGRFAM: CRISPR-associated protein TM1795 family-like; PFAM: protein of unknown function DUF324; KEGG: ttj:TTHB162 hypothetical protein; CRISPR-associated RAMP Cmr1 family protein complement(271200..272342) Rubrobacter xylanophilus DSM 9941 4117754 YP_643054.1 CDS Rxyl_0265 NC_008148.1 272345 274057 R TIGRFAM: CRISPR-associated protein, TM1812 CRISPR-associated protein DxTHG; KEGG: tma:TM1812 hypothetical protein; CRISPR-associated Csx2 family protein complement(272345..274057) Rubrobacter xylanophilus DSM 9941 4117755 YP_643055.1 CDS Rxyl_0266 NC_008148.1 274071 274559 R TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: tte:TTE2659 RecB family exonuclease; CRISPR-associated exonuclease Cas4 family protein complement(274071..274559) Rubrobacter xylanophilus DSM 9941 4117756 YP_643056.1 CDS Rxyl_0267 NC_008148.1 274556 277021 R TIGRFAM: CRISPR-associated helicase Cas3, core; KEGG: chy:CHY_2154 CRISPR-associated helicase Cas3; CRISPR-associated helicase Cas3 family protein complement(274556..277021) Rubrobacter xylanophilus DSM 9941 4117757 YP_643057.1 CDS Rxyl_0268 NC_008148.1 277018 277794 R TIGRFAM: CRISPR-associated protein Cas5; KEGG: chy:CHY_2155 CRISPR-associated protein Cas5, Hmari subtype; CRISPR-associated Cas5h family protein complement(277018..277794) Rubrobacter xylanophilus DSM 9941 4117758 YP_643058.1 CDS Rxyl_0269 NC_008148.1 277798 278742 R TIGRFAM: CRISPR-associated protein Csh2; PFAM: CRISPR-associated protein TM1801; KEGG: chy:CHY_2156 CRISPR-associated protein, Csh2 family; CRISPR-associated Csh2 family protein complement(277798..278742) Rubrobacter xylanophilus DSM 9941 4117759 YP_643059.1 CDS Rxyl_0270 NC_008148.1 278756 280768 R TIGRFAM: CRISPR-associated protein Csh1-like; KEGG: chy:CHY_2157 CRISPR-associated protein, Csh1 family; CRISPR-associated Csh1 family protein complement(278756..280768) Rubrobacter xylanophilus DSM 9941 4117760 YP_643060.1 CDS Rxyl_0271 NC_008148.1 280765 281538 R TIGRFAM: CRISPR-associated protein, TM1814; PFAM: protein of unknown function DUF57; KEGG: tte:TTE2664 hypothetical protein; CRISPR-associated Cas6 family protein complement(280765..281538) Rubrobacter xylanophilus DSM 9941 4117761 YP_643061.1 CDS Rxyl_0272 NC_008148.1 281664 282434 R PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pae:PA3857 phosphatidylcholine synthase; CDP-diacylglycerol-choline O-phosphatidyltransferase complement(281664..282434) Rubrobacter xylanophilus DSM 9941 4117762 YP_643062.1 CDS Rxyl_0273 NC_008148.1 282524 284209 R KEGG: tte:TTE0034 hypothetical protein; hypothetical protein complement(282524..284209) Rubrobacter xylanophilus DSM 9941 4117763 YP_643063.1 CDS Rxyl_0275 NC_008148.1 284515 285507 R KEGG: tte:TTE1453 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; tryptophanyl-tRNA synthetase complement(284515..285507) Rubrobacter xylanophilus DSM 9941 4117764 YP_643064.1 CDS Rxyl_0276 NC_008148.1 285668 286381 R PFAM: regulatory proteins, IclR; KEGG: tfu:Tfu_0625 regulatory proteins, IclR; IclR family transcriptional regulator complement(285668..286381) Rubrobacter xylanophilus DSM 9941 4117765 YP_643065.1 CDS Rxyl_0277 NC_008148.1 286472 287206 D PFAM: Methyltransferase type 11 Methyltransferase type 12; SMART: Ribosomal RNA adenine methylase transferase; KEGG: mca:MCA0998 methyltransferase, putative; type 11 methyltransferase 286472..287206 Rubrobacter xylanophilus DSM 9941 4117766 YP_643066.1 CDS Rxyl_0278 NC_008148.1 287254 288663 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 287254..288663 Rubrobacter xylanophilus DSM 9941 4117767 YP_643067.1 CDS Rxyl_0279 NC_008148.1 288664 289251 D KEGG: fra:Francci3_3620 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase-like; 3-isopropylmalate dehydratase small subunit 288664..289251 Rubrobacter xylanophilus DSM 9941 4117768 YP_643068.1 CDS Rxyl_0280 NC_008148.1 289269 289859 R PFAM: regulatory protein, TetR; KEGG: sth:STH2911 TetR family transcriptional regulator?; TetR family transcriptional regulator complement(289269..289859) Rubrobacter xylanophilus DSM 9941 4117769 YP_643069.1 CDS Rxyl_0281 NC_008148.1 289947 290264 D PFAM: small multidrug resistance protein; KEGG: gsu:GSU0707 SugE protein; small multidrug resistance protein 289947..290264 Rubrobacter xylanophilus DSM 9941 4117808 YP_643070.1 CDS Rxyl_0282 NC_008148.1 290468 291385 D PFAM: luciferase-like; KEGG: nfa:nfa10300 putative monooxygenase; luciferase-like protein 290468..291385 Rubrobacter xylanophilus DSM 9941 4117809 YP_643071.1 CDS Rxyl_0283 NC_008148.1 291382 292206 R PFAM: protein of unknown function DUF427; KEGG: mlo:mll7342 hypothetical protein; hypothetical protein complement(291382..292206) Rubrobacter xylanophilus DSM 9941 4117810 YP_643072.1 CDS Rxyl_0284 NC_008148.1 292334 293428 D hypothetical protein 292334..293428 Rubrobacter xylanophilus DSM 9941 4117811 YP_643073.1 CDS Rxyl_0285 NC_008148.1 293446 294843 D KEGG: gsu:GSU0719 hypothetical protein; hypothetical protein 293446..294843 Rubrobacter xylanophilus DSM 9941 4117812 YP_643074.1 CDS Rxyl_0286 NC_008148.1 294628 295965 R PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: ava:Ava_1825 hypothetical protein; FAD dependent oxidoreductase complement(294628..295965) Rubrobacter xylanophilus DSM 9941 4117813 YP_643075.1 CDS Rxyl_0287 NC_008148.1 296085 296672 D PFAM: Methyltransferase type 11; KEGG: bat:BAS4721 ribosomal RNA adenine dimethylase domain protein; type 11 methyltransferase 296085..296672 Rubrobacter xylanophilus DSM 9941 4117814 YP_643076.1 CDS Rxyl_0288 NC_008148.1 296669 297307 D PFAM: phosphatidylserine decarboxylase-related; KEGG: sth:STH1715 phosphatidylserine decarboxylase; phosphatidylserine decarboxylase 296669..297307 Rubrobacter xylanophilus DSM 9941 4117815 YP_643077.1 CDS Rxyl_0289 NC_008148.1 297304 297861 D TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dde:Dde_3217 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 297304..297861 Rubrobacter xylanophilus DSM 9941 4117816 YP_643078.1 CDS Rxyl_0290 NC_008148.1 298025 298228 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: xfa:XF2352 cold shock protein; cold-shock DNA-binding protein family protein 298025..298228 Rubrobacter xylanophilus DSM 9941 4117817 YP_643079.1 CDS Rxyl_0291 NC_008148.1 298574 299500 D PFAM: Integral membrane protein TerC; KEGG: gvi:glr4409 putative transmembrane transport protein; integral membrane protein TerC 298574..299500 Rubrobacter xylanophilus DSM 9941 4117818 YP_643080.1 CDS Rxyl_0292 NC_008148.1 299533 301887 D TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS-like MutS III MutS II MutS IV; KEGG: sth:STH1757 DNA mismatch repair protein; DNA mismatch repair protein MutS 299533..301887 Rubrobacter xylanophilus DSM 9941 4117819 YP_643081.1 CDS Rxyl_0293 NC_008148.1 301884 303482 D TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region, ATPase-like DNA mismatch repair protein-like; KEGG: ade:Adeh_1715 DNA mismatch repair protein MutL; DNA mismatch repair protein MutL 301884..303482 Rubrobacter xylanophilus DSM 9941 4117820 YP_643082.1 CDS Rxyl_0294 NC_008148.1 303479 303637 R hypothetical protein complement(303479..303637) Rubrobacter xylanophilus DSM 9941 4117821 YP_643083.1 CDS Rxyl_0295 NC_008148.1 303733 305364 D PFAM: gamma-glutamyltranspeptidase; KEGG: mlo:mll6984 gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2 303733..305364 Rubrobacter xylanophilus DSM 9941 4117822 YP_643084.1 CDS Rxyl_0296 NC_008148.1 305366 305842 D KEGG: tte:TTE1564 hypothetical protein; hypothetical protein 305366..305842 Rubrobacter xylanophilus DSM 9941 4117823 YP_643085.1 CDS Rxyl_0297 NC_008148.1 305916 307199 D PFAM: natural resistance-associated macrophage protein; KEGG: sco:SCO4993 metal ion transport protein; natural resistance-associated macrophage protein 305916..307199 Rubrobacter xylanophilus DSM 9941 4117824 YP_643086.1 CDS Rxyl_0298 NC_008148.1 307196 307819 R hypothetical protein complement(307196..307819) Rubrobacter xylanophilus DSM 9941 4117825 YP_643087.1 CDS Rxyl_0299 NC_008148.1 308173 310686 D PFAM: UvrB/UvrC protein AAA ATPase, central region Clp, N terminal ATPase associated with various cellular activities, AAA_5 ATPase AAA-2; SMART: ATPase; KEGG: tte:TTE2327 ATPases with chaperone activity, ATP-binding subunit; ATPase 308173..310686 Rubrobacter xylanophilus DSM 9941 4117826 YP_643088.1 CDS Rxyl_0300 NC_008148.1 310750 311454 R PFAM: glutathione S-transferase-like; KEGG: bur:Bcep18194_A5556 glutathione S-transferase-like; glutathione S-transferase-like protein complement(310750..311454) Rubrobacter xylanophilus DSM 9941 4117827 YP_643089.1 CDS Rxyl_0301 NC_008148.1 311532 313613 R KEGG: tth:TTC0808 glycogen phosphorylase; TIGRFAM: Alpha-glucan phosphorylase; PFAM: glycosyl transferase, family 35; alpha-glucan phosphorylase complement(311532..313613) Rubrobacter xylanophilus DSM 9941 4114762 YP_643090.1 CDS Rxyl_0302 NC_008148.1 313672 315426 D PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: gme:Gmet_2460 histidine kinase; histidine kinase 313672..315426 Rubrobacter xylanophilus DSM 9941 4114763 YP_643091.1 CDS Rxyl_0303 NC_008148.1 315405 316088 R hypothetical protein complement(315405..316088) Rubrobacter xylanophilus DSM 9941 4114764 YP_643092.1 CDS Rxyl_0304 NC_008148.1 316256 316705 D PFAM: Hemolysin-type calcium-binding region; KEGG: dde:Dde_1416 hypothetical protein; hemolysin-type calcium-binding region 316256..316705 Rubrobacter xylanophilus DSM 9941 4114765 YP_643093.1 CDS Rxyl_0305 NC_008148.1 316723 318075 R catalyzes the formation of L-tryptophan from indole and L-serine; tryptophan synthase subunit beta complement(316723..318075) Rubrobacter xylanophilus DSM 9941 4114766 YP_643094.1 CDS Rxyl_0306 NC_008148.1 318153 319823 R PFAM: metallophosphoesterase 5'-Nucleotidase-like; KEGG: gka:GK1763 5'-nucleotidase; 5'-nucleotidase-like protein complement(318153..319823) Rubrobacter xylanophilus DSM 9941 4114767 YP_643095.1 CDS Rxyl_0307 NC_008148.1 319836 320795 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: btk:BT9727_3270 glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase complement(319836..320795) Rubrobacter xylanophilus DSM 9941 4114768 YP_643096.1 CDS Rxyl_0308 NC_008148.1 320910 322472 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Alkaline phosphatase; KEGG: ana:all0207 putative phosphodiesterase; twin-arginine translocation pathway signal protein complement(320910..322472) Rubrobacter xylanophilus DSM 9941 4114769 YP_643097.1 CDS Rxyl_0309 NC_008148.1 322484 324526 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: protein of unknown function DUF839; KEGG: tfu:Tfu_2294 phosphatase; twin-arginine translocation pathway signal protein complement(322484..324526) Rubrobacter xylanophilus DSM 9941 4114770 YP_643098.1 CDS Rxyl_0310 NC_008148.1 324761 326245 R PFAM: Alkaline phosphatase; KEGG: ava:Ava_3741 twin-arginine translocation pathway signal; alkaline phosphatase complement(324761..326245) Rubrobacter xylanophilus DSM 9941 4114771 YP_643099.1 CDS Rxyl_0311 NC_008148.1 326295 328904 R KEGG: tac:Ta0686 hypothetical protein; glycogen debranching protein complement(326295..328904) Rubrobacter xylanophilus DSM 9941 4114772 YP_643100.1 CDS Rxyl_0312 NC_008148.1 328980 330746 R PFAM: peptidase S15 peptidase S9, prolyl oligopeptidase active site region dienelactone hydrolase WD40-like beta Propeller; KEGG: hma:rrnAC0178 prolyl oligopeptidase family protein; peptidase S9, prolyl oligopeptidase active site region complement(328980..330746) Rubrobacter xylanophilus DSM 9941 4114773 YP_643101.1 CDS Rxyl_0313 NC_008148.1 330934 331299 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: syn:slr0423 rare lipoprotein A; rare lipoprotein A 330934..331299 Rubrobacter xylanophilus DSM 9941 4114774 YP_643102.1 CDS Rxyl_0314 NC_008148.1 331629 333569 D PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: noc:Noc_0829 alpha amylase, catalytic region; alpha amylase 331629..333569 Rubrobacter xylanophilus DSM 9941 4114775 YP_643103.1 CDS Rxyl_0315 NC_008148.1 333566 336931 D KEGG: noc:Noc_0830 alpha amylase, catalytic region; TIGRFAM: Trehalose synthase-like Trehalose synthase/probable maltokinase-like; PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; trehalose synthase-like protein 333566..336931 Rubrobacter xylanophilus DSM 9941 4114776 YP_643104.1 CDS Rxyl_0316 NC_008148.1 336928 339096 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 336928..339096 Rubrobacter xylanophilus DSM 9941 4114777 YP_643105.1 CDS Rxyl_0317 NC_008148.1 339187 341334 D KEGG: noc:Noc_1740 glycogen debranching enzyme GlgX; TIGRFAM: Glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13-like alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; glycogen debranching protein GlgX 339187..341334 Rubrobacter xylanophilus DSM 9941 4114778 YP_643106.1 CDS Rxyl_0318 NC_008148.1 341331 343145 D KEGG: tbd:Tbd_1173 alpha amylase, catalytic subdomain; TIGRFAM: Malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase, family 13-like alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; malto-oligosyltrehalose trehalohydrolase 341331..343145 Rubrobacter xylanophilus DSM 9941 4114779 YP_643107.1 CDS Rxyl_0319 NC_008148.1 343142 345883 D KEGG: tbd:Tbd_1174 alpha amylase, catalytic subdomain; TIGRFAM: Malto-oligosyltrehalose synthase; PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; malto-oligosyltrehalose synthase 343142..345883 Rubrobacter xylanophilus DSM 9941 4114780 YP_643108.1 CDS Rxyl_0320 NC_008148.1 346098 346559 D hypothetical protein 346098..346559 Rubrobacter xylanophilus DSM 9941 4116052 YP_643109.1 CDS Rxyl_0321 NC_008148.1 346682 347332 D PFAM: UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: mhu:Mhun_2814 UbiE/COQ5 methyltransferase; demethylmenaquinone methyltransferase 346682..347332 Rubrobacter xylanophilus DSM 9941 4116053 YP_643110.1 CDS Rxyl_0322 NC_008148.1 347310 347684 R hypothetical protein complement(347310..347684) Rubrobacter xylanophilus DSM 9941 4116054 YP_643111.1 CDS Rxyl_0323 NC_008148.1 347745 348041 R hypothetical protein complement(347745..348041) Rubrobacter xylanophilus DSM 9941 4116055 YP_643112.1 CDS Rxyl_0324 NC_008148.1 348184 348999 D PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: mlo:mlr1637 hypothetical protein; short-chain dehydrogenase/reductase SDR 348184..348999 Rubrobacter xylanophilus DSM 9941 4116056 YP_643113.1 CDS Rxyl_0325 NC_008148.1 349038 349970 R PFAM: dihydrodipicolinate synthetase; KEGG: bja:blr3884 putative dihydrodipicolinate synthase; dihydrodipicolinate synthetase complement(349038..349970) Rubrobacter xylanophilus DSM 9941 4116057 YP_643114.1 CDS Rxyl_0326 NC_008148.1 349951 350916 R PFAM: nucleoside recognition; KEGG: gka:GK3080 hypothetical protein; nucleoside recognition protein complement(349951..350916) Rubrobacter xylanophilus DSM 9941 4116058 YP_643115.1 CDS Rxyl_0327 NC_008148.1 350965 353022 R KEGG: chy:CHY_1100 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif BRCT NAD-dependent DNA ligase zinc-finger, NAD-dependent DNA ligase C4-type NAD-dependent DNA ligase, OB-fold; SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase complement(350965..353022) Rubrobacter xylanophilus DSM 9941 4116059 YP_643116.1 CDS Rxyl_0328 NC_008148.1 353035 353514 R KEGG: dge:Dgeo_1195 hypothetical protein; hypothetical protein complement(353035..353514) Rubrobacter xylanophilus DSM 9941 4116060 YP_643117.1 CDS Rxyl_0329 NC_008148.1 353594 354160 D hypothetical protein 353594..354160 Rubrobacter xylanophilus DSM 9941 4116061 YP_643118.1 CDS Rxyl_0330 NC_008148.1 354157 354471 R hypothetical protein complement(354157..354471) Rubrobacter xylanophilus DSM 9941 4116062 YP_643119.1 CDS Rxyl_0331 NC_008148.1 354489 355511 D KEGG: nfa:nfa40670 putative translation initiation factor IF-2; hypothetical protein 354489..355511 Rubrobacter xylanophilus DSM 9941 4116063 YP_643120.1 CDS Rxyl_0332 NC_008148.1 355683 356372 D KEGG: tel:tll1692 lipid transfer protein M30 homolog; hypothetical protein 355683..356372 Rubrobacter xylanophilus DSM 9941 4116064 YP_643121.1 CDS Rxyl_0333 NC_008148.1 356365 357156 D hypothetical protein 356365..357156 Rubrobacter xylanophilus DSM 9941 4116065 YP_643122.1 CDS Rxyl_0334 NC_008148.1 357153 357806 D hypothetical protein 357153..357806 Rubrobacter xylanophilus DSM 9941 4116066 YP_643123.1 CDS Rxyl_0335 NC_008148.1 357803 358264 D PFAM: heat shock protein DnaJ-like; KEGG: xcv:XCV0501 DnaJ-related chaperone; heat shock protein DnaJ-like protein 357803..358264 Rubrobacter xylanophilus DSM 9941 4116067 YP_643124.1 CDS Rxyl_0336 NC_008148.1 358369 359760 D PFAM: selenium-binding protein; KEGG: reu:Reut_B5039 56kDa selenium binding; selenium-binding protein 358369..359760 Rubrobacter xylanophilus DSM 9941 4116068 YP_643125.1 CDS Rxyl_0337 NC_008148.1 359757 360392 D KEGG: reu:Reut_B5040 hypothetical protein; hypothetical protein 359757..360392 Rubrobacter xylanophilus DSM 9941 4116069 YP_643126.1 CDS Rxyl_0338 NC_008148.1 360389 361012 R PFAM: peptidase C60, sortase A and B; KEGG: sth:STH2376 sortase, putative; peptidase C60, sortase A and B complement(360389..361012) Rubrobacter xylanophilus DSM 9941 4116070 YP_643127.1 CDS Rxyl_0339 NC_008148.1 361061 361894 D PFAM: phage integrase phage integrase-like SAM-like; KEGG: pca:Pcar_0623 site-specific recombinase, phage integrase family; phage integrase 361061..361894 Rubrobacter xylanophilus DSM 9941 4116071 YP_643128.1 CDS Rxyl_0340 NC_008148.1 361959 362288 D hypothetical protein 361959..362288 Rubrobacter xylanophilus DSM 9941 4115063 YP_643129.1 CDS Rxyl_0341 NC_008148.1 362408 366877 D PFAM: glutamine amidotransferase, class-II glutamate synthase, alpha subunit-like ferredoxin-dependent glutamate synthase glutamate synthase; KEGG: mca:MCA2039 glutamate synthase, large subunit; glutamate synthase (NADH) large subunit 362408..366877 Rubrobacter xylanophilus DSM 9941 4115064 YP_643130.1 CDS Rxyl_0342 NC_008148.1 366877 368304 D TIGRFAM: glutamate synthases, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mpa:MAP0173 glutamate synthase (NADPH) small chain; glutamate synthase (NADH) small subunit 366877..368304 Rubrobacter xylanophilus DSM 9941 4115065 YP_643131.1 CDS Rxyl_0343 NC_008148.1 368305 370032 R PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: dra:DR1078 antibiotic biosynthesis protein LmbJ, putative; type 12 methyltransferase complement(368305..370032) Rubrobacter xylanophilus DSM 9941 4115066 YP_643132.1 CDS Rxyl_0344 NC_008148.1 370137 370697 D PFAM: LemA; KEGG: bcl:ABC1505 Listeria epitope LemA; hypothetical protein 370137..370697 Rubrobacter xylanophilus DSM 9941 4115067 YP_643133.1 CDS Rxyl_0345 NC_008148.1 370702 371661 D PFAM: peptidase M48, Ste24p; KEGG: det:DET1587 peptidase, M28 family; HtpX-2 peptidase 370702..371661 Rubrobacter xylanophilus DSM 9941 4115068 YP_643134.1 CDS Rxyl_0346 NC_008148.1 372049 372819 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gka:GK1683 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(372049..372819) Rubrobacter xylanophilus DSM 9941 4115069 YP_643135.1 CDS Rxyl_0347 NC_008148.1 372838 373440 R PFAM: regulatory protein, TetR; KEGG: pfo:Pfl_3944 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(372838..373440) Rubrobacter xylanophilus DSM 9941 4115070 YP_643136.1 CDS Rxyl_0348 NC_008148.1 373796 374773 D PFAM: dehydrogenase, E1 component; KEGG: tte:TTE0186 Thiamine pyrophosphate-dependent dehydrogenases, E1 component alpha subunit; pyruvate dehydrogenase 373796..374773 Rubrobacter xylanophilus DSM 9941 4115071 YP_643137.1 CDS Rxyl_0349 NC_008148.1 374792 375784 D PFAM: Transketolase, central region Transketolase-like; KEGG: sso:SSO1526 pyruvate dehydrogenase E1 component, beta subunit; transketolase, central region 374792..375784 Rubrobacter xylanophilus DSM 9941 4115072 YP_643138.1 CDS Rxyl_0350 NC_008148.1 375803 376993 D PFAM: biotin/lipoyl attachment catalytic domain of components of various dehydrogenase complexes E3 binding; KEGG: tfu:Tfu_3051 pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase; dehydrogenase catalytic domain-containing protein 375803..376993 Rubrobacter xylanophilus DSM 9941 4115073 YP_643139.1 CDS Rxyl_0351 NC_008148.1 377009 378082 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bur:Bcep18194_B1325 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase GroES-like protein 377009..378082 Rubrobacter xylanophilus DSM 9941 4115074 YP_643140.1 CDS Rxyl_0352 NC_008148.1 378084 378896 D PFAM: putative cyclase; KEGG: cps:CPS_3501 putative cyclase; putative cyclase 378084..378896 Rubrobacter xylanophilus DSM 9941 4115075 YP_643141.1 CDS Rxyl_0353 NC_008148.1 378906 380468 D PFAM: AMP-dependent synthetase and ligase; KEGG: nfa:nfa55900 putative acyl-CoA synthetase; AMP-dependent synthetase and ligase 378906..380468 Rubrobacter xylanophilus DSM 9941 4115076 YP_643142.1 CDS Rxyl_0354 NC_008148.1 380534 380947 R hypothetical protein complement(380534..380947) Rubrobacter xylanophilus DSM 9941 4115077 YP_643143.1 CDS Rxyl_0355 NC_008148.1 380944 382359 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like FAD dependent oxidoreductase; KEGG: sil:SPO1469 3-ketosteroid dehydrogenase, putative; fumarate reductase/succinate dehydrogenase flavoprotein-like protein complement(380944..382359) Rubrobacter xylanophilus DSM 9941 4115078 YP_643144.1 CDS Rxyl_0356 NC_008148.1 382349 383050 R hypothetical protein complement(382349..383050) Rubrobacter xylanophilus DSM 9941 4115079 YP_643145.1 CDS Rxyl_0357 NC_008148.1 383047 384411 R PFAM: MmgE/PrpD; KEGG: bbr:BB1350 hypothetical protein; MmgE/PrpD complement(383047..384411) Rubrobacter xylanophilus DSM 9941 4115080 YP_643146.1 CDS Rxyl_0358 NC_008148.1 384419 385870 R PFAM: amidohydrolase; KEGG: ana:alr5010 D-hydantoinase; dihydropyrimidinase complement(384419..385870) Rubrobacter xylanophilus DSM 9941 4115081 YP_643147.1 CDS Rxyl_0359 NC_008148.1 385904 386605 R PFAM: ABC transporter related; SMART: ATPase; KEGG: sak:SAK_1594 hydrophobic amino acid uptake (HAAT) family ABC transporter, ATP-binding protein LivF; ABC transporter-like protein complement(385904..386605) Rubrobacter xylanophilus DSM 9941 4115082 YP_643148.1 CDS Rxyl_0360 NC_008148.1 386592 387323 R PFAM: ABC transporter related; SMART: ATPase; KEGG: ape:APE2524 putative branched-chain amino acid transport system ATP-binding protein; ABC transporter-like protein complement(386592..387323) Rubrobacter xylanophilus DSM 9941 4115083 YP_643149.1 CDS Rxyl_0361 NC_008148.1 387320 388321 R PFAM: inner-membrane translocator; KEGG: rpb:RPB_3618 inner-membrane translocator; inner-membrane translocator complement(387320..388321) Rubrobacter xylanophilus DSM 9941 4115084 YP_643150.1 CDS Rxyl_0362 NC_008148.1 388321 389211 R PFAM: inner-membrane translocator; KEGG: cch:Cag_0852 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator complement(388321..389211) Rubrobacter xylanophilus DSM 9941 4115085 YP_643151.1 CDS Rxyl_0363 NC_008148.1 389347 390588 R PFAM: Extracellular ligand-binding receptor; KEGG: ape:APE2521 putative branched-chain amino acid transport system substrate-binding protein; extracellular ligand-binding receptor complement(389347..390588) Rubrobacter xylanophilus DSM 9941 4115086 YP_643152.1 CDS Rxyl_0364 NC_008148.1 390810 391607 D PFAM: regulatory proteins, IclR; KEGG: sth:STH2538 transcriptional regulator; IclR family transcriptional regulator 390810..391607 Rubrobacter xylanophilus DSM 9941 4115087 YP_643153.1 CDS Rxyl_0365 NC_008148.1 391609 392799 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sco:SCO2032 hypothetical protein; L-carnitine dehydratase/bile acid-inducible protein F 391609..392799 Rubrobacter xylanophilus DSM 9941 4115088 YP_643154.1 CDS Rxyl_0366 NC_008148.1 392796 393656 D PFAM: HpcH/HpaI aldolase; KEGG: bte:BTH_II2226 probable citrate lyase beta subunit; citryl-CoA lyase 392796..393656 Rubrobacter xylanophilus DSM 9941 4115089 YP_643155.1 CDS Rxyl_0367 NC_008148.1 393653 394462 D PFAM: putative cyclase; KEGG: eli:ELI_08540 probable polyketide cyclase; putative cyclase 393653..394462 Rubrobacter xylanophilus DSM 9941 4115090 YP_643156.1 CDS Rxyl_0368 NC_008148.1 394459 395877 D PFAM: MmgE/PrpD; KEGG: bte:BTH_II2225 MmgE/PrpD family superfamily; MmgE/PrpD 394459..395877 Rubrobacter xylanophilus DSM 9941 4115091 YP_643157.1 CDS Rxyl_0369 NC_008148.1 395886 396809 D PFAM: luciferase-like; KEGG: sma:SAV589 putative F420-dependent dehydrogenase; luciferase-like protein 395886..396809 Rubrobacter xylanophilus DSM 9941 4115092 YP_643158.1 CDS Rxyl_0370 NC_008148.1 396874 397545 R PFAM: regulatory protein, TetR; KEGG: tfu:Tfu_2799 TetR/AcrR family transcriptional regulator; TetR family transcriptional regulator complement(396874..397545) Rubrobacter xylanophilus DSM 9941 4115093 YP_643159.1 CDS Rxyl_0371 NC_008148.1 397682 399316 D PFAM: AMP-dependent synthetase and ligase; KEGG: chy:CHY_2411 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 397682..399316 Rubrobacter xylanophilus DSM 9941 4115094 YP_643160.1 CDS Rxyl_0372 NC_008148.1 399340 400116 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: afu:AF0435 enoyl-CoA hydratase; short chain enoyl-CoA hydratase 399340..400116 Rubrobacter xylanophilus DSM 9941 4115095 YP_643161.1 CDS Rxyl_0373 NC_008148.1 400127 400894 D PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: pae:PA2554 3-hydroxyacyl-CoA dehydrogenase; short-chain dehydrogenase/reductase SDR 400127..400894 Rubrobacter xylanophilus DSM 9941 4115096 YP_643162.1 CDS Rxyl_0374 NC_008148.1 400962 402263 D PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: bja:bll0889 putative transport protein; major facilitator transporter 400962..402263 Rubrobacter xylanophilus DSM 9941 4115097 YP_643163.1 CDS Rxyl_0375 NC_008148.1 402273 403430 D PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: cef:CE0723 putative glutaryl-CoA dehydrogenase precursor; acyl-CoA dehydrogenase-like protein 402273..403430 Rubrobacter xylanophilus DSM 9941 4115098 YP_643164.1 CDS Rxyl_0376 NC_008148.1 403447 404307 D PFAM: amidohydrolase 2; KEGG: rpb:RPB_1417 amidohydrolase 2; amidohydrolase 2 403447..404307 Rubrobacter xylanophilus DSM 9941 4115099 YP_643165.1 CDS Rxyl_0377 NC_008148.1 404478 406298 D PFAM: amidohydrolase; KEGG: mta:Moth_0463 adenine deaminase; adenine deaminase 404478..406298 Rubrobacter xylanophilus DSM 9941 4115100 YP_643166.1 CDS Rxyl_0378 NC_008148.1 406295 406999 R PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: ctc:CTC01130 transcriptional regulatory protein; two component transcriptional regulator complement(406295..406999) Rubrobacter xylanophilus DSM 9941 4115101 YP_643167.1 CDS Rxyl_0379 NC_008148.1 406992 408716 R PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like PAS fold-4 PAS fold; SMART: PAS; KEGG: sth:STH3307 two-component sensor histidine kinase; multi-sensor signal transduction histidine kinase complement(406992..408716) Rubrobacter xylanophilus DSM 9941 4117478 YP_643168.1 CDS Rxyl_0380 NC_008148.1 408805 409266 D hypothetical protein 408805..409266 Rubrobacter xylanophilus DSM 9941 4117479 YP_643169.1 CDS Rxyl_0381 NC_008148.1 409263 410363 R PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase GTP cyclohydrolase II; KEGG: gsu:GSU1690 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase complement(409263..410363) Rubrobacter xylanophilus DSM 9941 4117480 YP_643170.1 CDS Rxyl_0382 NC_008148.1 410384 411439 R KEGG: lxx:Lxx07200 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent NAD-dependent glycerol-3-phosphate dehydrogenase-like Ketopantoate reductase ApbA/PanE-like; 2-dehydropantoate 2-reductase complement(410384..411439) Rubrobacter xylanophilus DSM 9941 4117481 YP_643171.1 CDS Rxyl_0383 NC_008148.1 411596 412729 D PFAM: glycosyl transferase, group 1; KEGG: sco:SCO5681 glycosyl transferase; group 1 glycosyl transferase 411596..412729 Rubrobacter xylanophilus DSM 9941 4117482 YP_643172.1 CDS Rxyl_0384 NC_008148.1 412726 413721 D TIGRFAM: conserved hypothetical protein; KEGG: lmf:LMOf2365_2525 membrane protein, putative; hypothetical protein 412726..413721 Rubrobacter xylanophilus DSM 9941 4117483 YP_643173.1 CDS Rxyl_0385 NC_008148.1 413718 414488 D KEGG: sth:STH2880 hypothetical protein; hypothetical protein 413718..414488 Rubrobacter xylanophilus DSM 9941 4117484 YP_643174.1 CDS Rxyl_0387 NC_008148.1 415243 416556 R PFAM: major facilitator superfamily MFS_1; KEGG: gsu:GSU3264 membrane protein, putative; major facilitator transporter complement(415243..416556) Rubrobacter xylanophilus DSM 9941 4117485 YP_643175.1 CDS Rxyl_0388 NC_008148.1 416553 417437 R TIGRFAM: degV family protein; PFAM: DegV; KEGG: deh:cbdb_A1004 DegV family protein; degV family protein complement(416553..417437) Rubrobacter xylanophilus DSM 9941 4117486 YP_643176.1 CDS Rxyl_0389 NC_008148.1 417636 418268 R hypothetical protein complement(417636..418268) Rubrobacter xylanophilus DSM 9941 4117487 YP_643177.1 CDS Rxyl_0390 NC_008148.1 418416 419072 R PFAM: protein of unknown function DUF205; KEGG: gsu:GSU0507 hypothetical protein; acyl-phosphate glycerol-3-phosphate acyltransferase complement(418416..419072) Rubrobacter xylanophilus DSM 9941 4117488 YP_643178.1 CDS Rxyl_0391 NC_008148.1 419125 419676 D hypothetical protein 419125..419676 Rubrobacter xylanophilus DSM 9941 4117489 YP_643179.1 CDS Rxyl_0392 NC_008148.1 419665 420849 R PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: bms:BR0546 oxidoreductase, Gfo/Idh/MocA family; oxidoreductase-like protein complement(419665..420849) Rubrobacter xylanophilus DSM 9941 4117490 YP_643180.1 CDS Rxyl_0393 NC_008148.1 420851 421852 R PFAM: AP endonuclease 2-like Xylose isomerase-like TIM barrel; KEGG: rba:RB4654 hypothetical protein; xylose isomerase-like protein complement(420851..421852) Rubrobacter xylanophilus DSM 9941 4117491 YP_643181.1 CDS Rxyl_0394 NC_008148.1 421871 423115 R PFAM: oxidoreductase-like; KEGG: sme:SMb20013 hypothetical protein; oxidoreductase-like protein complement(421871..423115) Rubrobacter xylanophilus DSM 9941 4117492 YP_643182.1 CDS Rxyl_0395 NC_008148.1 423128 424075 R PFAM: inner-membrane translocator; KEGG: atc:AGR_L_989 sugar ABC transporter (permease); inner-membrane translocator complement(423128..424075) Rubrobacter xylanophilus DSM 9941 4117493 YP_643183.1 CDS Rxyl_0396 NC_008148.1 424072 425061 R PFAM: inner-membrane translocator; KEGG: atc:AGR_L_991 sugar transport system permease protein homolog; inner-membrane translocator complement(424072..425061) Rubrobacter xylanophilus DSM 9941 4117494 YP_643184.1 CDS Rxyl_0397 NC_008148.1 425058 426566 R PFAM: ABC transporter related; SMART: ATPase; KEGG: atc:AGR_L_992 high affinity ribose transport protein; ABC transporter-like protein complement(425058..426566) Rubrobacter xylanophilus DSM 9941 4117495 YP_643185.1 CDS Rxyl_0398 NC_008148.1 426569 427666 R KEGG: atc:AGR_L_993 periplasmic sugar binding protein homolog; periplasmic sugar binding protein-like protein complement(426569..427666) Rubrobacter xylanophilus DSM 9941 4117496 YP_643186.1 CDS Rxyl_0399 NC_008148.1 427722 428930 R PFAM: ROK; KEGG: lxx:Lxx03030 transcriptional regulator, ROK family; ROK domain-containing protein complement(427722..428930) Rubrobacter xylanophilus DSM 9941 4115220 YP_643187.1 CDS Rxyl_0400 NC_008148.1 429223 430278 D catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 429223..430278 Rubrobacter xylanophilus DSM 9941 4115221 YP_643188.1 CDS Rxyl_0401 NC_008148.1 430304 431368 D PFAM: Xylose isomerase-like TIM barrel; KEGG: eca:ECA1953 putative xylose isomerase; xylose isomerase-like protein 430304..431368 Rubrobacter xylanophilus DSM 9941 4115222 YP_643189.1 CDS Rxyl_0402 NC_008148.1 431365 432861 D KEGG: mta:Moth_2025 xylulokinase; TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; xylulokinase 431365..432861 Rubrobacter xylanophilus DSM 9941 4115223 YP_643190.1 CDS Rxyl_0403 NC_008148.1 432980 434635 D PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: cef:CE1931 putative periplasmic serine protease; peptidase S1 and S6, chymotrypsin/Hap 432980..434635 Rubrobacter xylanophilus DSM 9941 4115224 YP_643191.1 CDS Rxyl_0404 NC_008148.1 435009 435254 D hypothetical protein 435009..435254 Rubrobacter xylanophilus DSM 9941 4115225 YP_643192.1 CDS Rxyl_0405 NC_008148.1 435244 436056 D PFAM: ABC transporter related; SMART: ATPase; KEGG: tko:TK2026 ABC-type multidrug transport system, ATPase component; ABC transporter-like protein 435244..436056 Rubrobacter xylanophilus DSM 9941 4115226 YP_643193.1 CDS Rxyl_0406 NC_008148.1 436053 436892 D PFAM: ABC-2 type transporter; KEGG: ape:APE2512 putative ABC-2 type transport system permease protein; ABC transporter 436053..436892 Rubrobacter xylanophilus DSM 9941 4115227 YP_643194.1 CDS Rxyl_0407 NC_008148.1 436921 438726 R PFAM: IucA/IucC; KEGG: ava:Ava_2833 IucA/IucC; IucA/IucC protein complement(436921..438726) Rubrobacter xylanophilus DSM 9941 4115228 YP_643195.1 CDS Rxyl_0408 NC_008148.1 438745 440040 R KEGG: ava:Ava_2835 probable monooxygenase; L-lysine 6-monooxygenase complement(438745..440040) Rubrobacter xylanophilus DSM 9941 4115229 YP_643196.1 CDS Rxyl_0409 NC_008148.1 440027 440614 R KEGG: ana:all0393 hypothetical protein; hypothetical protein complement(440027..440614) Rubrobacter xylanophilus DSM 9941 4115230 YP_643197.1 CDS Rxyl_0410 NC_008148.1 440611 442347 R PFAM: IucA/IucC; KEGG: ana:all0394 hypothetical protein; IucA/IucC protein complement(440611..442347) Rubrobacter xylanophilus DSM 9941 4115231 YP_643198.1 CDS Rxyl_0412 NC_008148.1 443797 445194 R catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase complement(443797..445194) Rubrobacter xylanophilus DSM 9941 4115232 YP_643199.1 CDS Rxyl_0413 NC_008148.1 445285 446244 R PFAM: periplasmic binding protein; KEGG: gka:GK1457 iron(III) dicitrate ABC transporter (lipoprotein); periplasmic binding protein complement(445285..446244) Rubrobacter xylanophilus DSM 9941 4115233 YP_643200.1 CDS Rxyl_0414 NC_008148.1 446383 447390 D PFAM: transport system permease protein; KEGG: ana:all2586 iron(III) dicitrate transport system permease protein; transport system permease 446383..447390 Rubrobacter xylanophilus DSM 9941 4115234 YP_643201.1 CDS Rxyl_0415 NC_008148.1 447387 448427 D PFAM: transport system permease protein; KEGG: ana:all2585 iron(III) dicitrate transport system permease protein; transport system permease 447387..448427 Rubrobacter xylanophilus DSM 9941 4115235 YP_643202.1 CDS Rxyl_0416 NC_008148.1 448438 449292 D PFAM: ABC transporter related; SMART: ATPase; KEGG: syn:slr1318 ABC-type iron(III) dicitrate transport system ATP-binding protein.; ABC transporter-like protein 448438..449292 Rubrobacter xylanophilus DSM 9941 4115236 YP_643203.1 CDS Rxyl_0417 NC_008148.1 449289 450092 D KEGG: fra:Francci3_4381 hypothetical protein; hypothetical protein 449289..450092 Rubrobacter xylanophilus DSM 9941 4115237 YP_643204.1 CDS Rxyl_0418 NC_008148.1 450117 451160 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: periplasmic binding protein; KEGG: cjk:jk1776 putative iron ABC transport system, solute binding protein; twin-arginine translocation pathway signal protein 450117..451160 Rubrobacter xylanophilus DSM 9941 4115238 YP_643205.1 CDS Rxyl_0419 NC_008148.1 451190 452224 D PFAM: periplasmic binding protein; KEGG: mbo:Mb0271c probable periplasmic iron-transport lipoprotein; periplasmic binding protein 451190..452224 Rubrobacter xylanophilus DSM 9941 4115239 YP_643206.1 CDS Rxyl_0420 NC_008148.1 452250 452609 D KEGG: fra:Francci3_2469 hypothetical protein; hypothetical protein 452250..452609 Rubrobacter xylanophilus DSM 9941 4115240 YP_643207.1 CDS Rxyl_0421 NC_008148.1 452661 452861 R PFAM: protein of unknown function DUF466; KEGG: bur:Bcep18194_B0098 protein of unknown function DUF466; hypothetical protein complement(452661..452861) Rubrobacter xylanophilus DSM 9941 4115241 YP_643208.1 CDS Rxyl_0422 NC_008148.1 452874 454997 R PFAM: carbon starvation protein CstA; KEGG: fra:Francci3_2468 carbon starvation protein CstA; carbon starvation protein CstA complement(452874..454997) Rubrobacter xylanophilus DSM 9941 4115242 YP_643209.1 CDS Rxyl_0423 NC_008148.1 455081 455803 R PFAM: ABC-2 type transporter; KEGG: sai:Saci_0388 conserved archaeal membrane protein; ABC transporter complement(455081..455803) Rubrobacter xylanophilus DSM 9941 4115243 YP_643210.1 CDS Rxyl_0424 NC_008148.1 455793 456743 R PFAM: ABC transporter related; SMART: ATPase; KEGG: ape:APE2579 putative ABC-2 type transport system ATP-binding protein; ABC transporter-like protein complement(455793..456743) Rubrobacter xylanophilus DSM 9941 4115244 YP_643211.1 CDS Rxyl_0425 NC_008148.1 456903 457787 D PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: sma:SAV1542 putative dehydrogenase; 6-phosphogluconate dehydrogenase 456903..457787 Rubrobacter xylanophilus DSM 9941 4115245 YP_643212.1 CDS Rxyl_0426 NC_008148.1 457819 459216 R PFAM: FAD linked oxidase-like Berberine/berberine-like; KEGG: reu:Reut_A1637 FAD linked oxidase, N-terminal; FAD linked oxidase-like protein complement(457819..459216) Rubrobacter xylanophilus DSM 9941 4115246 YP_643213.1 CDS Rxyl_0427 NC_008148.1 459259 460062 R KEGG: bte:BTH_I2822 hypothetical protein; hypothetical protein complement(459259..460062) Rubrobacter xylanophilus DSM 9941 4115247 YP_643214.1 CDS Rxyl_0428 NC_008148.1 460129 460749 R PFAM: protein of unknown function DUF1326; KEGG: rso:RS01737 hypothetical protein; hypothetical protein complement(460129..460749) Rubrobacter xylanophilus DSM 9941 4115248 YP_643215.1 CDS Rxyl_0429 NC_008148.1 460787 461161 R KEGG: mlo:mll5389 hypothetical protein; hypothetical protein complement(460787..461161) Rubrobacter xylanophilus DSM 9941 4115249 YP_643216.1 CDS Rxyl_0430 NC_008148.1 461323 463365 R KEGG: gvi:glr3133 unknown protein; hypothetical protein complement(461323..463365) Rubrobacter xylanophilus DSM 9941 4115250 YP_643217.1 CDS Rxyl_0431 NC_008148.1 463575 463829 D hypothetical protein 463575..463829 Rubrobacter xylanophilus DSM 9941 4115251 YP_643218.1 CDS Rxyl_0432 NC_008148.1 463834 464193 D PFAM: protein of unknown function DUF498; KEGG: bta:533224 hypothetical LOC533224; hypothetical protein 463834..464193 Rubrobacter xylanophilus DSM 9941 4115252 YP_643219.1 CDS Rxyl_0433 NC_008148.1 464412 464858 R hypothetical protein complement(464412..464858) Rubrobacter xylanophilus DSM 9941 4115253 YP_643220.1 CDS Rxyl_0434 NC_008148.1 464930 465442 D hypothetical protein 464930..465442 Rubrobacter xylanophilus DSM 9941 4115254 YP_643221.1 CDS Rxyl_0435 NC_008148.1 465439 465708 R PFAM: ferredoxin; KEGG: tel:tsl1009 ferredoxin I; ferredoxin complement(465439..465708) Rubrobacter xylanophilus DSM 9941 4115255 YP_643222.1 CDS Rxyl_0436 NC_008148.1 465816 468224 R PFAM: Rubredoxin-type Fe(Cys)4 protein UspA; KEGG: mma:MM1452 universal stress protein; hypothetical protein complement(465816..468224) Rubrobacter xylanophilus DSM 9941 4115256 YP_643223.1 CDS Rxyl_0437 NC_008148.1 468493 469764 R PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: ava:Ava_2049 hypothetical protein; hypothetical protein complement(468493..469764) Rubrobacter xylanophilus DSM 9941 4115257 YP_643224.1 CDS Rxyl_0438 NC_008148.1 469776 470513 R PFAM: ABC-2 type transporter; KEGG: det:DET0814 ABC transporter, permease protein; ABC transporter complement(469776..470513) Rubrobacter xylanophilus DSM 9941 4115258 YP_643225.1 CDS Rxyl_0439 NC_008148.1 470510 471361 R PFAM: ABC transporter related; SMART: ATPase; KEGG: chy:CHY_0900 daunorubicin resistance ABC transporter, ATP-binding protein; ABC transporter-like protein complement(470510..471361) Rubrobacter xylanophilus DSM 9941 4116601 YP_643226.1 CDS Rxyl_0440 NC_008148.1 471349 471972 R PFAM: regulatory protein, TetR; KEGG: sth:STH2255 TetR family transcriptional regulator; TetR family transcriptional regulator complement(471349..471972) Rubrobacter xylanophilus DSM 9941 4116602 YP_643227.1 CDS Rxyl_0441 NC_008148.1 472116 474092 D PFAM: Amylo-alpha-1,6-glucosidase; KEGG: sco:SCO7493 hypothetical protein; amylo-alpha-1,6-glucosidase 472116..474092 Rubrobacter xylanophilus DSM 9941 4116603 YP_643228.1 CDS Rxyl_0442 NC_008148.1 474125 474370 D hypothetical protein 474125..474370 Rubrobacter xylanophilus DSM 9941 4116604 YP_643229.1 CDS Rxyl_0443 NC_008148.1 474375 475544 R PFAM: peptidase S1 and S6, chymotrypsin/Hap Colicin V production protein; KEGG: fra:Francci3_4292 colicin V production protein; peptidase S1 and S6, chymotrypsin/Hap complement(474375..475544) Rubrobacter xylanophilus DSM 9941 4116605 YP_643230.1 CDS Rxyl_0444 NC_008148.1 475594 476661 D TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM; KEGG: gka:GK1174 hypothetical protein; hypothetical protein 475594..476661 Rubrobacter xylanophilus DSM 9941 4116606 YP_643231.1 CDS Rxyl_0445 NC_008148.1 476658 477137 D PFAM: membrane-flanked domain; KEGG: bha:BH1720 hypothetical protein; membrane-flanked domain-containing protein 476658..477137 Rubrobacter xylanophilus DSM 9941 4116607 YP_643232.1 CDS Rxyl_0446 NC_008148.1 477127 478623 D PFAM: membrane-flanked domain; KEGG: bld:BLi00548 YdbT; membrane-flanked domain-containing protein 477127..478623 Rubrobacter xylanophilus DSM 9941 4116608 YP_643233.1 CDS Rxyl_0447 NC_008148.1 478592 479491 R PFAM: metallophosphoesterase; KEGG: syn:sll0222 alkaline phosphatase; alkaline phosphatase complement(478592..479491) Rubrobacter xylanophilus DSM 9941 4116609 YP_643234.1 CDS Rxyl_0448 NC_008148.1 479590 482457 R PFAM: SMC protein-like; KEGG: mka:MK0690 SMC1-family ATPase involved in DNA repair; SMC protein-like protein complement(479590..482457) Rubrobacter xylanophilus DSM 9941 4116610 YP_643235.1 CDS Rxyl_0449 NC_008148.1 482454 483518 R PFAM: metallophosphoesterase; KEGG: mka:MK0691 DNA repair exonuclease of the SbcD/Mre11-family; metallophosphoesterase complement(482454..483518) Rubrobacter xylanophilus DSM 9941 4116611 YP_643236.1 CDS Rxyl_0450 NC_008148.1 483675 484454 R PFAM: biotin/lipoate A/B protein ligase; KEGG: bbr:BB2891 putative lipoate-protein ligase A; biotin/lipoate A/B protein ligase complement(483675..484454) Rubrobacter xylanophilus DSM 9941 4116612 YP_643237.1 CDS Rxyl_0451 NC_008148.1 484451 484729 R KEGG: bbr:BB2890 hypothetical protein; hypothetical protein complement(484451..484729) Rubrobacter xylanophilus DSM 9941 4116613 YP_643238.1 CDS Rxyl_0452 NC_008148.1 484731 486779 R KEGG: tth:TTC1879 hypothetical cytosolic protein; hypothetical protein complement(484731..486779) Rubrobacter xylanophilus DSM 9941 4116614 YP_643239.1 CDS Rxyl_0453 NC_008148.1 486788 487906 R hypothetical protein complement(486788..487906) Rubrobacter xylanophilus DSM 9941 4116615 YP_643240.1 CDS Rxyl_0454 NC_008148.1 487940 488482 R hypothetical protein complement(487940..488482) Rubrobacter xylanophilus DSM 9941 4116616 YP_643241.1 CDS Rxyl_0455 NC_008148.1 488509 489888 R PFAM: peptidase M20 peptidase dimerisation; KEGG: tth:TTC0765 hypothetical protein; peptidase M20 complement(488509..489888) Rubrobacter xylanophilus DSM 9941 4116617 YP_643242.1 CDS Rxyl_0456 NC_008148.1 489968 490459 D hypothetical protein 489968..490459 Rubrobacter xylanophilus DSM 9941 4116618 YP_643243.1 CDS Rxyl_0457 NC_008148.1 490587 491282 D hypothetical protein 490587..491282 Rubrobacter xylanophilus DSM 9941 4116619 YP_643244.1 CDS Rxyl_0458 NC_008148.1 491375 491899 D PFAM: Allergen V5/Tpx-1 related; KEGG: mta:Moth_1705 allergen V5/TPX-1 related; allergen V5/Tpx-1-like protein 491375..491899 Rubrobacter xylanophilus DSM 9941 4116620 YP_643245.1 CDS Rxyl_0459 NC_008148.1 491982 492788 R PFAM: Creatininase; KEGG: blo:BL0014 creatinine amidohydrolase; creatininase; creatininase complement(491982..492788) Rubrobacter xylanophilus DSM 9941 4116426 YP_643246.1 CDS Rxyl_0460 NC_008148.1 492878 494386 R PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: bja:bll3347 unknown protein; cytosine/purines uracil thiamine allantoin permease complement(492878..494386) Rubrobacter xylanophilus DSM 9941 4116427 YP_643247.1 CDS Rxyl_0461 NC_008148.1 494510 495769 R PFAM: creatinase peptidase M24; KEGG: ppu:PP3667 creatinase; creatinase complement(494510..495769) Rubrobacter xylanophilus DSM 9941 4116428 YP_643248.1 CDS Rxyl_0462 NC_008148.1 495838 496974 R TIGRFAM: Glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; KEGG: gka:GK0623 glycine oxidase; glycine oxidase complement(495838..496974) Rubrobacter xylanophilus DSM 9941 4116429 YP_643249.1 CDS Rxyl_0463 NC_008148.1 496971 497954 R PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: noc:Noc_2604 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent enzyme subunit beta complement(496971..497954) Rubrobacter xylanophilus DSM 9941 4116430 YP_643250.1 CDS Rxyl_0464 NC_008148.1 497983 499293 R PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: ppu:PP3666 metabolite MFS transporter, MHS family; general substrate transporter complement(497983..499293) Rubrobacter xylanophilus DSM 9941 4116431 YP_643251.1 CDS Rxyl_0465 NC_008148.1 499478 500284 R PFAM: regulatory proteins, IclR; KEGG: mlo:mlr8761 hypothetical protein; IclR family transcriptional regulator complement(499478..500284) Rubrobacter xylanophilus DSM 9941 4116432 YP_643252.1 CDS Rxyl_0466 NC_008148.1 500453 501808 R TIGRFAM: Peptidase M20D, amidohydrolase; PFAM: peptidase dimerisation; KEGG: eli:ELI_13895 hypothetical protein; peptidase M20D, amidohydrolase complement(500453..501808) Rubrobacter xylanophilus DSM 9941 4116433 YP_643253.1 CDS Rxyl_0467 NC_008148.1 501827 503131 R PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: bpm:BURPS1710b_1596 putative proline/betaine transporter; general substrate transporter complement(501827..503131) Rubrobacter xylanophilus DSM 9941 4116434 YP_643254.1 CDS Rxyl_0468 NC_008148.1 503202 504518 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(503202..504518) Rubrobacter xylanophilus DSM 9941 4116435 YP_643255.1 CDS Rxyl_0469 NC_008148.1 504667 506091 R PFAM: glycine hydroxymethyltransferase aromatic amino acid beta-eliminating lyase/threonine aldolase aminotransferase class-III; KEGG: tfu:Tfu_2353 glycine hydroxymethyltransferase; serine hydroxymethyltransferase complement(504667..506091) Rubrobacter xylanophilus DSM 9941 4116436 YP_643256.1 CDS Rxyl_0470 NC_008148.1 506265 507587 D KEGG: mlo:mlr4790 aminomethyltransferase; TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); aminomethyltransferase 506265..507587 Rubrobacter xylanophilus DSM 9941 4116437 YP_643257.1 CDS solA NC_008148.1 507584 508915 D catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyltryptophan oxidase 507584..508915 Rubrobacter xylanophilus DSM 9941 4116438 YP_643258.1 CDS Rxyl_0472 NC_008148.1 508958 509227 R hypothetical protein complement(508958..509227) Rubrobacter xylanophilus DSM 9941 4116439 YP_643259.1 CDS Rxyl_0473 NC_008148.1 509280 511361 R catalyzes the formation of catechol from phenol; phenol 2-monooxygenase complement(509280..511361) Rubrobacter xylanophilus DSM 9941 4116440 YP_643260.1 CDS Rxyl_0474 NC_008148.1 511602 512483 D PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ava:Ava_0824 transcriptional regulator, LysR family; LysR family transcriptional regulator 511602..512483 Rubrobacter xylanophilus DSM 9941 4116441 YP_643261.1 CDS Rxyl_0475 NC_008148.1 512480 513082 R hypothetical protein complement(512480..513082) Rubrobacter xylanophilus DSM 9941 4116442 YP_643262.1 CDS Rxyl_0476 NC_008148.1 513233 513475 D KEGG: ade:Adeh_0959 hypothetical protein; hypothetical protein 513233..513475 Rubrobacter xylanophilus DSM 9941 4116443 YP_643263.1 CDS Rxyl_0477 NC_008148.1 513493 514392 D PFAM: glycosyl transferase, family 2; KEGG: sco:SCO6189 transferase; glycosyl transferase family protein 513493..514392 Rubrobacter xylanophilus DSM 9941 4116444 YP_643264.1 CDS Rxyl_0478 NC_008148.1 514403 515431 D PFAM: histone deacetylase superfamily; KEGG: mka:MK1055 predicted deacetylase; histone deacetylase superfamily protein 514403..515431 Rubrobacter xylanophilus DSM 9941 4114663 YP_643265.1 CDS Rxyl_0479 NC_008148.1 515506 515922 D PFAM: protein of unknown function DUF101; KEGG: ttj:TTHA1745 hypothetical protein; hypothetical protein 515506..515922 Rubrobacter xylanophilus DSM 9941 4114664 YP_643266.1 CDS Rxyl_0480 NC_008148.1 515915 517369 D PFAM: protein of unknown function UPF0027; KEGG: tth:TTC1426 RtcB protein; hypothetical protein 515915..517369 Rubrobacter xylanophilus DSM 9941 4114665 YP_643267.1 CDS Rxyl_0481 NC_008148.1 517372 518043 D PFAM: phosphoribosyltransferase; KEGG: ava:Ava_4124 phosphoribosyltransferase; phosphoribosyltransferase 517372..518043 Rubrobacter xylanophilus DSM 9941 4114666 YP_643268.1 CDS Rxyl_0482 NC_008148.1 518040 518702 D PFAM: dienelactone hydrolase; KEGG: eba:ebA2870 hypothetical protein; dienelactone hydrolase 518040..518702 Rubrobacter xylanophilus DSM 9941 4114667 YP_643269.1 CDS Rxyl_0483 NC_008148.1 518708 519691 D KEGG: dps:DP2296 poly-gamma-glutamate synthesis protein (capsule biosynthesis protein); poly-gamma-glutamate synthesis protein 518708..519691 Rubrobacter xylanophilus DSM 9941 4114668 YP_643270.1 CDS Rxyl_0484 NC_008148.1 519688 520680 R PFAM: luciferase-like; KEGG: mpa:MAP3120c hypothetical protein; luciferase-like protein complement(519688..520680) Rubrobacter xylanophilus DSM 9941 4114669 YP_643271.1 CDS Rxyl_0485 NC_008148.1 520718 521440 R PFAM: beta-lactamase-like; KEGG: pca:Pcar_2717 hypothetical protein; beta-lactamase-like protein complement(520718..521440) Rubrobacter xylanophilus DSM 9941 4114670 YP_643272.1 CDS Rxyl_0486 NC_008148.1 521437 523161 R PFAM: PHP-like; SMART: DNA polymerase X Phosphoesterase PHP-like Helix-hairpin-helix DNA-binding, class 1; KEGG: cbu:CBU_0490 hypothetical DNA polymerase / putative histidinol phosphatase; PHP-like protein complement(521437..523161) Rubrobacter xylanophilus DSM 9941 4114671 YP_643273.1 CDS Rxyl_0487 NC_008148.1 523163 523891 R PFAM: protein of unknown function DUF72; KEGG: sru:SRU_0463 protein of unknown function superfamily; hypothetical protein complement(523163..523891) Rubrobacter xylanophilus DSM 9941 4114672 YP_643274.1 CDS Rxyl_0488 NC_008148.1 523971 524438 R KEGG: sco:SCP1.90c putative atp/gtp-binding protein; kinase-like protein complement(523971..524438) Rubrobacter xylanophilus DSM 9941 4114673 YP_643275.1 CDS Rxyl_0489 NC_008148.1 524527 525195 D PFAM: protein of unknown function DUF159; KEGG: ava:Ava_3892 protein of unknown function DUF159; hypothetical protein 524527..525195 Rubrobacter xylanophilus DSM 9941 4114674 YP_643276.1 CDS Rxyl_0490 NC_008148.1 525195 526103 D PFAM: Indigoidine synthase A like protein; KEGG: tte:TTE0327 uncharacterized enzyme involved in pigment biosynthesis; indigoidine synthase A like protein 525195..526103 Rubrobacter xylanophilus DSM 9941 4114675 YP_643277.1 CDS Rxyl_0491 NC_008148.1 526100 527011 D PFAM: PfkB; KEGG: tfu:Tfu_2129 putative sugar kinase; PfkB protein 526100..527011 Rubrobacter xylanophilus DSM 9941 4114676 YP_643278.1 CDS Rxyl_0492 NC_008148.1 527042 529306 D KEGG: tel:tll0627 hypothetical protein; TIGRFAM: GGDEF domain; PFAM: GGDEF EAL PAS fold-3 PAS fold; SMART: PAS PAC motif; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 527042..529306 Rubrobacter xylanophilus DSM 9941 4114677 YP_643279.1 CDS Rxyl_0493 NC_008148.1 529311 530285 R PFAM: Terpene synthase, metal-binding; KEGG: ava:Ava_1982 terpene synthase, metal-binding; Terpene synthase, metal-binding protein complement(529311..530285) Rubrobacter xylanophilus DSM 9941 4114678 YP_643280.1 CDS Rxyl_0494 NC_008148.1 530406 531362 R PFAM: aldo/keto reductase; KEGG: syn:slr0545 auxin-induced protein; aldo/keto reductase complement(530406..531362) Rubrobacter xylanophilus DSM 9941 4114679 YP_643281.1 CDS Rxyl_0495 NC_008148.1 531359 532342 R PFAM: alpha/beta hydrolase fold; KEGG: cya:CYA_1156 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold protein domain-containing protein complement(531359..532342) Rubrobacter xylanophilus DSM 9941 4114680 YP_643282.1 CDS Rxyl_0496 NC_008148.1 532535 533887 D PFAM: protein kinase tyrosine protein kinase; SMART: Serine/threonine protein kinase; KEGG: sth:STH1353 serine/threonine protein kinase; serine/threonine protein kinase 532535..533887 Rubrobacter xylanophilus DSM 9941 4114681 YP_643283.1 CDS Rxyl_0497 NC_008148.1 533894 534337 R KEGG: ade:Adeh_1681 PE-PGRS family protein; hypothetical protein complement(533894..534337) Rubrobacter xylanophilus DSM 9941 4114682 YP_643284.1 CDS Rxyl_0498 NC_008148.1 534359 534844 R hypothetical protein complement(534359..534844) Rubrobacter xylanophilus DSM 9941 4116757 YP_643285.1 CDS Rxyl_0499 NC_008148.1 534936 535295 D hypothetical protein 534936..535295 Rubrobacter xylanophilus DSM 9941 4116758 YP_643286.1 CDS Rxyl_0500 NC_008148.1 535292 536020 R TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sao:SAOUHSC_01991 ABC transporter, permease protein, putative; amino acid ABC transporter permease complement(535292..536020) Rubrobacter xylanophilus DSM 9941 4116759 YP_643287.1 CDS Rxyl_0501 NC_008148.1 536044 536889 R PFAM: extracellular solute-binding protein, family 3; SMART: Ionotropic glutamate receptor; KEGG: chy:CHY_0504 glutamine ABC transporter, glutamine-binding protein; extracellular solute-binding protein complement(536044..536889) Rubrobacter xylanophilus DSM 9941 4116760 YP_643288.1 CDS Rxyl_0502 NC_008148.1 537013 537747 R PFAM: ABC transporter related; SMART: ATPase; KEGG: dde:Dde_1428 ATPase; ABC transporter-like protein complement(537013..537747) Rubrobacter xylanophilus DSM 9941 4116761 YP_643289.1 CDS Rxyl_0503 NC_008148.1 537835 538485 D TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: syf:Synpcc7942_2543 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein 537835..538485 Rubrobacter xylanophilus DSM 9941 4116762 YP_643290.1 CDS Rxyl_0504 NC_008148.1 538472 539575 D PFAM: glucose sorbosone dehydrogenase; KEGG: cbu:CBU_0368 hypothetical protein; glucose sorbosone dehydrogenase 538472..539575 Rubrobacter xylanophilus DSM 9941 4116763 YP_643291.1 CDS Rxyl_0505 NC_008148.1 539678 540739 D SMART: regulatory proteins, AsnC/Lrp; KEGG: tdn:Tmden_1976 putative transcriptional regulator, AsnC family; AsnC family transcriptional regulator 539678..540739 Rubrobacter xylanophilus DSM 9941 4116764 YP_643292.1 CDS Rxyl_0506 NC_008148.1 540752 541486 D PFAM: protein of unknown function DUF81; KEGG: rpb:RPB_1485 protein of unknown function DUF81; hypothetical protein 540752..541486 Rubrobacter xylanophilus DSM 9941 4116765 YP_643293.1 CDS Rxyl_0507 NC_008148.1 541560 542912 D PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS00896 probable transport transmembrane protein; major facilitator transporter 541560..542912 Rubrobacter xylanophilus DSM 9941 4116766 YP_643294.1 CDS Rxyl_0508 NC_008148.1 542902 543639 R TIGRFAM: haloacid dehalogenase, type II HAD-superfamily hydrolase, subfamily IA, variant 2; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: bte:BTH_II0507 haloacid dehalogenase, type II; haloacid dehalogenase I complement(542902..543639) Rubrobacter xylanophilus DSM 9941 4116767 YP_643295.1 CDS Rxyl_0509 NC_008148.1 543735 544067 D PFAM: conserved hypothetical protein 103; KEGG: mta:Moth_0028 hypothetical protein; hypothetical protein 543735..544067 Rubrobacter xylanophilus DSM 9941 4116768 YP_643296.1 CDS Rxyl_0510 NC_008148.1 544081 544680 D KEGG: lxx:Lxx03440 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: RecR protein TOPRIM; SMART: Toprim subdomain; DNA replication and repair protein RecR 544081..544680 Rubrobacter xylanophilus DSM 9941 4116769 YP_643297.1 CDS Rxyl_0511 NC_008148.1 544718 546937 D PFAM: helicase-like DEAD/DEAH box helicase-like; KEGG: deh:cbdb_A928 ATP-dependent RNA helicase, DEAD; DEAD/DEAH box helicase 544718..546937 Rubrobacter xylanophilus DSM 9941 4116770 YP_643298.1 CDS Rxyl_0512 NC_008148.1 546934 547398 D TIGRFAM: conserved hypothetical protein; KEGG: mka:MK1390 predicted Rossmann fold nucleotide-binding protein; hypothetical protein 546934..547398 Rubrobacter xylanophilus DSM 9941 4116771 YP_643299.1 CDS Rxyl_0513 NC_008148.1 547428 548129 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gvi:glr0293 probable carbonyl reductase; short-chain dehydrogenase/reductase SDR 547428..548129 Rubrobacter xylanophilus DSM 9941 4116772 YP_643300.1 CDS Rxyl_0514 NC_008148.1 548215 548835 D KEGG: sth:STH2141 alkaline phosphatase; alkaline phosphatase 548215..548835 Rubrobacter xylanophilus DSM 9941 4116773 YP_643301.1 CDS Rxyl_0515 NC_008148.1 548832 549704 D PFAM: alpha/beta hydrolase fold; KEGG: tfu:Tfu_0079 similar to hydrolase or acyltransferase (alpha/beta hydrolase superfamily); alpha/beta hydrolase fold protein domain-containing protein 548832..549704 Rubrobacter xylanophilus DSM 9941 4116774 YP_643302.1 CDS Rxyl_0516 NC_008148.1 549704 550480 D KEGG: mta:Moth_1083 hypothetical protein; hypothetical protein 549704..550480 Rubrobacter xylanophilus DSM 9941 4116775 YP_643303.1 CDS Rxyl_0517 NC_008148.1 550489 551664 R PFAM: major facilitator superfamily MFS_1; KEGG: ava:Ava_0244 major facilitator superfamily MFS_1; major facilitator transporter complement(550489..551664) Rubrobacter xylanophilus DSM 9941 4116289 YP_643304.1 CDS Rxyl_0518 NC_008148.1 551719 551967 R PFAM: protein of unknown function DUF190; KEGG: mta:Moth_0526 protein of unknown function DUF190; hypothetical protein complement(551719..551967) Rubrobacter xylanophilus DSM 9941 4116290 YP_643305.1 CDS Rxyl_0519 NC_008148.1 551970 552566 R hypothetical protein complement(551970..552566) Rubrobacter xylanophilus DSM 9941 4116291 YP_643306.1 CDS Rxyl_0520 NC_008148.1 552566 553228 R KEGG: sma:SAV1204 putative IS630 family transposase; hypothetical protein complement(552566..553228) Rubrobacter xylanophilus DSM 9941 4116292 YP_643307.1 CDS Rxyl_0521 NC_008148.1 553225 553557 R PFAM: protein of unknown function DUF190; KEGG: ttj:TTHA0334 hypothetical protein; hypothetical protein complement(553225..553557) Rubrobacter xylanophilus DSM 9941 4116293 YP_643308.1 CDS Rxyl_0522 NC_008148.1 553554 553928 R PFAM: Camphor resistance CrcB protein; KEGG: tth:TTC1648 integral membrane protein; camphor resistance protein CrcB complement(553554..553928) Rubrobacter xylanophilus DSM 9941 4116294 YP_643309.1 CDS Rxyl_0523 NC_008148.1 553929 554606 R PFAM: Camphor resistance CrcB protein; KEGG: hch:HCH_02448 integral membrane protein possibly involved in chromosome condensation; camphor resistance CrcB protein complement(553929..554606) Rubrobacter xylanophilus DSM 9941 4116295 YP_643310.1 CDS Rxyl_0524 NC_008148.1 554886 555290 D PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: nfa:nfa7500 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like protein 554886..555290 Rubrobacter xylanophilus DSM 9941 4116296 YP_643311.1 CDS Rxyl_0525 NC_008148.1 555298 555828 R PFAM: transcriptional regulator PadR-like; KEGG: deh:cbdb_A1083 putative transcriptional regulator, PadR-like family; PadR family transcriptional regulator complement(555298..555828) Rubrobacter xylanophilus DSM 9941 4116297 YP_643312.1 CDS Rxyl_0526 NC_008148.1 555947 556927 D PFAM: FAD dependent oxidoreductase; KEGG: sma:SAV1672 putative D-amino acid oxidase; D-amino acid oxidase 555947..556927 Rubrobacter xylanophilus DSM 9941 4116298 YP_643313.1 CDS Rxyl_0527 NC_008148.1 557027 557785 D PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mta:Moth_2304 GntR-like; GntR family transcriptional regulator 557027..557785 Rubrobacter xylanophilus DSM 9941 4116299 YP_643314.1 CDS Rxyl_0528 NC_008148.1 557803 558756 D PFAM: beta-lactamase-like; KEGG: gsu:GSU2769 metallo-beta-lactamase family protein; beta-lactamase-like protein 557803..558756 Rubrobacter xylanophilus DSM 9941 4116300 YP_643315.1 CDS Rxyl_0529 NC_008148.1 558830 559675 D PFAM: Xylose isomerase-like TIM barrel; KEGG: rba:RB201 sugar phosphate isomerase/epimerase; xylose isomerase-like protein 558830..559675 Rubrobacter xylanophilus DSM 9941 4116301 YP_643316.1 CDS Rxyl_0530 NC_008148.1 559688 560794 D PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: rba:RB7494 probable NADH-dependent dyhydrogenase related protein; oxidoreductase-like protein 559688..560794 Rubrobacter xylanophilus DSM 9941 4116302 YP_643317.1 CDS Rxyl_0531 NC_008148.1 560781 561533 D PFAM: short-chain dehydrogenase/reductase SDR Insect alcohol dehydrogenase family; KEGG: sco:SCO0365 probable oxidoreductase (secreted protein); short-chain dehydrogenase/reductase SDR 560781..561533 Rubrobacter xylanophilus DSM 9941 4116303 YP_643318.1 CDS Rxyl_0532 NC_008148.1 561533 562660 D KEGG: sco:SCO0366 hypothetical protein; hypothetical protein 561533..562660 Rubrobacter xylanophilus DSM 9941 4116304 YP_643319.1 CDS Rxyl_0533 NC_008148.1 562657 563793 D PFAM: amidohydrolase 2; KEGG: bja:bll7907 hypothetical protein; amidohydrolase 2 562657..563793 Rubrobacter xylanophilus DSM 9941 4116305 YP_643320.1 CDS Rxyl_0534 NC_008148.1 563793 564164 D PFAM: Rieske [2Fe-2S] region; KEGG: mpa:MAP0741c hypothetical protein; Rieske (2Fe-2S) domain-containing protein 563793..564164 Rubrobacter xylanophilus DSM 9941 4116306 YP_643321.1 CDS Rxyl_0535 NC_008148.1 564168 564404 D hypothetical protein 564168..564404 Rubrobacter xylanophilus DSM 9941 4116307 YP_643322.1 CDS Rxyl_0536 NC_008148.1 564451 567138 D PFAM: D-galactarate dehydratase/Altronate hydrolase-like; KEGG: bmb:BruAb2_0426 hydrolase, UxaA family; D-galactarate dehydratase/Altronate hydrolase-like protein 564451..567138 Rubrobacter xylanophilus DSM 9941 4116308 YP_643323.1 CDS Rxyl_0537 NC_008148.1 567143 567913 R TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xcb:XC_0161 2-deoxy-D-gluconate 3-dehydrogenase; 2-deoxy-D-gluconate 3-dehydrogenase complement(567143..567913) Rubrobacter xylanophilus DSM 9941 4116153 YP_643324.1 CDS Rxyl_0538 NC_008148.1 567915 568403 R PFAM: Cupin 2, conserved barrel; KEGG: reu:Reut_A0381 hypothetical protein; cupin 2 barrel domain-containing protein complement(567915..568403) Rubrobacter xylanophilus DSM 9941 4116154 YP_643325.1 CDS Rxyl_0539 NC_008148.1 568535 569278 D PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mta:Moth_2304 GntR-like; GntR family transcriptional regulator 568535..569278 Rubrobacter xylanophilus DSM 9941 4116155 YP_643326.1 CDS Rxyl_0540 NC_008148.1 569271 570092 D PFAM: beta-lactamase-like; KEGG: nph:NP3970A hydrolase (probable hydroxyacylglutathione hydrolase) 3; beta-lactamase-like protein 569271..570092 Rubrobacter xylanophilus DSM 9941 4116156 YP_643327.1 CDS Rxyl_0541 NC_008148.1 570142 570897 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB1748 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 570142..570897 Rubrobacter xylanophilus DSM 9941 4116157 YP_643328.1 CDS Rxyl_0542 NC_008148.1 570910 571278 D PFAM: Cupin 2, conserved barrel; KEGG: hma:rrnAC3415 hypothetical protein; cupin 2 barrel domain-containing protein 570910..571278 Rubrobacter xylanophilus DSM 9941 4116158 YP_643329.1 CDS Rxyl_0543 NC_008148.1 571275 572318 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bja:blr3675 putative alcohol dehydrogenase; alcohol dehydrogenase GroES-like protein 571275..572318 Rubrobacter xylanophilus DSM 9941 4116159 YP_643330.1 CDS Rxyl_0544 NC_008148.1 572584 574032 R PFAM: aldehyde dehydrogenase; KEGG: bsu:BG11159 aldehyde dehydrogenase; aldehyde dehydrogenase complement(572584..574032) Rubrobacter xylanophilus DSM 9941 4116160 YP_643331.1 CDS Rxyl_0545 NC_008148.1 574098 574916 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rba:RB8851 probable 2-hydroxyhepta-2,4-diene-1,7-dioate isomaerase; fumarylacetoacetate (FAA) hydrolase complement(574098..574916) Rubrobacter xylanophilus DSM 9941 4116161 YP_643332.1 CDS Rxyl_0546 NC_008148.1 575052 575945 D PFAM: beta-lactamase-like; KEGG: tfu:Tfu_2040 similar to Zn-dependent hydrolase including glyoxylases; beta-lactamase-like protein 575052..575945 Rubrobacter xylanophilus DSM 9941 4116162 YP_643333.1 CDS Rxyl_0547 NC_008148.1 575970 577172 D PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: hma:rrnAC0575 mandelate racemase/muconate lactonizing enzyme family; mandelate racemase/muconate lactonizing-like protein 575970..577172 Rubrobacter xylanophilus DSM 9941 4116163 YP_643334.1 CDS Rxyl_0548 NC_008148.1 577169 577969 R PFAM: ABC transporter related; SMART: ATPase; KEGG: tfu:Tfu_1921 ABC-type sugar transport system ATPase component; ABC transporter-like protein complement(577169..577969) Rubrobacter xylanophilus DSM 9941 4116164 YP_643335.1 CDS Rxyl_0549 NC_008148.1 577966 578970 R PFAM: inner-membrane translocator; KEGG: sai:Saci_2121 membrane protein; inner-membrane translocator complement(577966..578970) Rubrobacter xylanophilus DSM 9941 4116165 YP_643336.1 CDS Rxyl_0550 NC_008148.1 578974 580068 R KEGG: sai:Saci_2122 hypothetical protein; hypothetical protein complement(578974..580068) Rubrobacter xylanophilus DSM 9941 4116166 YP_643337.1 CDS Rxyl_0551 NC_008148.1 580146 580925 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gka:GK1190 3-ketoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR complement(580146..580925) Rubrobacter xylanophilus DSM 9941 4116167 YP_643338.1 CDS Rxyl_0552 NC_008148.1 580929 582101 R PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sco:SCO2401 dehydratase; mandelate racemase/muconate lactonizing-like protein complement(580929..582101) Rubrobacter xylanophilus DSM 9941 4116168 YP_643339.1 CDS Rxyl_0553 NC_008148.1 582098 583033 R KEGG: gka:GK1960 hypothetical protein; hypothetical protein complement(582098..583033) Rubrobacter xylanophilus DSM 9941 4116169 YP_643340.1 CDS Rxyl_0554 NC_008148.1 583030 583788 R PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mta:Moth_1310 regulatory protein GntR, HTH; GntR family transcriptional regulator complement(583030..583788) Rubrobacter xylanophilus DSM 9941 4116170 YP_643341.1 CDS Rxyl_0555 NC_008148.1 583889 584287 D hypothetical protein 583889..584287 Rubrobacter xylanophilus DSM 9941 4116171 YP_643342.1 CDS Rxyl_0556 NC_008148.1 584262 584525 R hypothetical protein complement(584262..584525) Rubrobacter xylanophilus DSM 9941 4116737 YP_643343.1 CDS Rxyl_0557 NC_008148.1 584552 584809 R hypothetical protein complement(584552..584809) Rubrobacter xylanophilus DSM 9941 4116738 YP_643344.1 CDS Rxyl_0558 NC_008148.1 585027 585626 R hypothetical protein complement(585027..585626) Rubrobacter xylanophilus DSM 9941 4116739 YP_643345.1 CDS Rxyl_0559 NC_008148.1 585742 587685 R PFAM: TPR repeat O-antigen polymerase Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mta:Moth_1253 O-antigen polymerase; O-antigen polymerase complement(585742..587685) Rubrobacter xylanophilus DSM 9941 4116740 YP_643346.1 CDS Rxyl_0560 NC_008148.1 587827 589305 D PFAM: lipopolysaccharide biosynthesis; KEGG: fra:Francci3_3472 protein-tyrosine kinase; protein-tyrosine kinase 587827..589305 Rubrobacter xylanophilus DSM 9941 4116741 YP_643347.1 CDS Rxyl_0561 NC_008148.1 589575 590945 D PFAM: polysaccharide biosynthesis protein; KEGG: noc:Noc_1513 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 589575..590945 Rubrobacter xylanophilus DSM 9941 4116742 YP_643348.1 CDS Rxyl_0562 NC_008148.1 590942 591901 D KEGG: rba:RB10430 hypothetical protein; hypothetical protein 590942..591901 Rubrobacter xylanophilus DSM 9941 4116743 YP_643349.1 CDS Rxyl_0563 NC_008148.1 591962 592810 D PFAM: glycosyl transferase, family 2; KEGG: gme:Gmet_2885 glycosyl transferase, family 2; glycosyl transferase family protein 591962..592810 Rubrobacter xylanophilus DSM 9941 4116744 YP_643350.1 CDS Rxyl_0564 NC_008148.1 592846 593838 D PFAM: glycosyl transferase, family 2; KEGG: tbd:Tbd_0313 rhamnosyl transferase related protein; glycosyl transferase family protein 592846..593838 Rubrobacter xylanophilus DSM 9941 4116745 YP_643351.1 CDS Rxyl_0565 NC_008148.1 594291 595172 D hypothetical protein 594291..595172 Rubrobacter xylanophilus DSM 9941 4116746 YP_643352.1 CDS Rxyl_0566 NC_008148.1 595213 596298 D PFAM: glycosyl transferase, group 1; KEGG: tcx:Tcr_1682 hypothetical protein; group 1 glycosyl transferase 595213..596298 Rubrobacter xylanophilus DSM 9941 4116747 YP_643353.1 CDS Rxyl_0567 NC_008148.1 596295 597299 D TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase dTDP-4-dehydrorhamnose reductase; KEGG: aae:aq_1082 GDP-D-mannose dehydratase; GDP-mannose 4,6-dehydratase 596295..597299 Rubrobacter xylanophilus DSM 9941 4116748 YP_643354.1 CDS Rxyl_0568 NC_008148.1 597300 598247 D PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: rpa:RPA3952 possible oxidoreductase Rmd; NAD-dependent epimerase/dehydratase 597300..598247 Rubrobacter xylanophilus DSM 9941 4116749 YP_643355.1 CDS Rxyl_0571 NC_008148.1 599744 601204 D PFAM: sugar transferase; KEGG: noc:Noc_1508 undecaprenyl-phosphate galactosephosphotransferase; undecaprenyl-phosphate galactosephosphotransferase 599744..601204 Rubrobacter xylanophilus DSM 9941 4116750 YP_643356.1 CDS Rxyl_0572 NC_008148.1 601474 601803 D hypothetical protein 601474..601803 Rubrobacter xylanophilus DSM 9941 4116751 YP_643357.1 CDS Rxyl_0573 NC_008148.1 601974 602795 D PFAM: transposase, IS4; KEGG: sru:SRU_0356 IS982 family transposase; IS4 family transposase 601974..602795 Rubrobacter xylanophilus DSM 9941 4116752 YP_643358.1 CDS Rxyl_0574 NC_008148.1 603080 603967 D PFAM: helix-turn-helix protein RpiR; KEGG: sco:SCO0724 transcriptional regulator; RpiR family transcriptional regulator 603080..603967 Rubrobacter xylanophilus DSM 9941 4116753 YP_643359.1 CDS Rxyl_0575 NC_008148.1 604020 605459 D PFAM: Na+/solute symporter; KEGG: pae:PA0287 probable sodium:solute symporter; Na+/solute symporter 604020..605459 Rubrobacter xylanophilus DSM 9941 4116754 YP_643360.1 CDS Rxyl_0576 NC_008148.1 605484 607013 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 605484..607013 Rubrobacter xylanophilus DSM 9941 4116755 YP_643361.1 CDS Rxyl_0577 NC_008148.1 607231 608235 D PFAM: ABC transporter related; SMART: ATPase; KEGG: sco:SCO2931 putative ABC transporter ATP-binding protein; ABC transporter-like protein 607231..608235 Rubrobacter xylanophilus DSM 9941 4116756 YP_643362.1 CDS Rxyl_0578 NC_008148.1 608239 608946 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ava:Ava_2960 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 608239..608946 Rubrobacter xylanophilus DSM 9941 4116544 YP_643363.1 CDS Rxyl_0579 NC_008148.1 608947 609600 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cya:CYA_2571 quaternary amine ABC transporter (QAT) family, permease protein; binding-protein-dependent transport system inner membrane protein 608947..609600 Rubrobacter xylanophilus DSM 9941 4116545 YP_643364.1 CDS Rxyl_0580 NC_008148.1 609626 610591 D PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: cyb:CYB_0579 quaternary amine uptake ABC transporter (QAT) family, periplasmic substrate-binding protein; glycine betaine ABC transporter substrate-binding protein 609626..610591 Rubrobacter xylanophilus DSM 9941 4116546 YP_643365.1 CDS Rxyl_0581 NC_008148.1 610588 612075 D PFAM: phenylalanine/histidine ammonia-lyase; KEGG: sma:SAV3504 putative histidine ammonia-lyase; histidine ammonia-lyase 610588..612075 Rubrobacter xylanophilus DSM 9941 4116547 YP_643366.1 CDS Rxyl_0582 NC_008148.1 612077 613294 D KEGG: gka:GK3252 N-carbamoyl-L-amino acid amidohydrolase; TIGRFAM: Amidase, hydantoinase/carbamoylase; PFAM: peptidase M20; hydantoinase/carbamoylase 612077..613294 Rubrobacter xylanophilus DSM 9941 4116548 YP_643367.1 CDS Rxyl_0583 NC_008148.1 613291 614955 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 613291..614955 Rubrobacter xylanophilus DSM 9941 4116549 YP_643368.1 CDS Rxyl_0584 NC_008148.1 614952 616214 D catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase 614952..616214 Rubrobacter xylanophilus DSM 9941 4116550 YP_643369.1 CDS Rxyl_0585 NC_008148.1 616211 617458 D KEGG: sth:STH3191 imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase Amidohydrolase 3; imidazolonepropionase 616211..617458 Rubrobacter xylanophilus DSM 9941 4116551 YP_643370.1 CDS Rxyl_0586 NC_008148.1 617974 618378 D PFAM: helix-turn-helix motif protein of unknown function UPF0150; KEGG: ava:Ava_1938 hypothetical protein; XRE family transcriptional regulator 617974..618378 Rubrobacter xylanophilus DSM 9941 4116552 YP_643371.1 CDS Rxyl_0587 NC_008148.1 618375 618563 D PFAM: YcfA-like; KEGG: rba:RB3259 hypothetical protein; hypothetical protein 618375..618563 Rubrobacter xylanophilus DSM 9941 4116553 YP_643372.1 CDS Rxyl_0589 NC_008148.1 619658 620347 D PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: sth:STH750 two-component response regulator, probably involved in phosphate sensing; two component transcriptional regulator 619658..620347 Rubrobacter xylanophilus DSM 9941 4116554 YP_643373.1 CDS Rxyl_0590 NC_008148.1 620344 620970 R PFAM: protein of unknown function DUF305; KEGG: tfu:Tfu_0639 putative secreted protein; hypothetical protein complement(620344..620970) Rubrobacter xylanophilus DSM 9941 4116555 YP_643374.1 CDS Rxyl_0591 NC_008148.1 620967 621626 R KEGG: tfu:Tfu_0640 hypothetical protein; hypothetical protein complement(620967..621626) Rubrobacter xylanophilus DSM 9941 4116556 YP_643375.1 CDS Rxyl_0592 NC_008148.1 621638 622051 R PFAM: protein of unknown function DUF1232; KEGG: mca:MCA1269 hypothetical protein; hypothetical protein complement(621638..622051) Rubrobacter xylanophilus DSM 9941 4116557 YP_643376.1 CDS Rxyl_0593 NC_008148.1 622067 624202 R TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase Heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase Heavy metal transport/detoxification protein E1-E2 ATPase-associated region; KEGG: gka:GK0750 cation-transporting ATPase; heavy metal translocating P-type ATPase complement(622067..624202) Rubrobacter xylanophilus DSM 9941 4116558 YP_643377.1 CDS Rxyl_0594 NC_008148.1 624251 625195 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sma:SAV7048 putative cation efflux system protein; cation diffusion facilitator family transporter complement(624251..625195) Rubrobacter xylanophilus DSM 9941 4116559 YP_643378.1 CDS Rxyl_0595 NC_008148.1 625238 625615 R PFAM: regulatory protein, ArsR; KEGG: dra:DRA0071 transcriptional repressor SmtB; ArsR family transcriptional regulator complement(625238..625615) Rubrobacter xylanophilus DSM 9941 4116560 YP_643379.1 CDS Rxyl_0596 NC_008148.1 625625 626515 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mbo:Mb2050c possible conserved membrane protein; cation diffusion facilitator family transporter complement(625625..626515) Rubrobacter xylanophilus DSM 9941 4116561 YP_643380.1 CDS Rxyl_0597 NC_008148.1 626512 626940 R PFAM: protein of unknown function UPF0066; KEGG: pab:PAB0452 virR related; hypothetical protein complement(626512..626940) Rubrobacter xylanophilus DSM 9941 4116562 YP_643381.1 CDS Rxyl_0598 NC_008148.1 626937 627449 R PFAM: GCN5-related N-acetyltransferase; KEGG: bha:BH1868 hypothetical protein; N-acetyltransferase GCN5 complement(626937..627449) Rubrobacter xylanophilus DSM 9941 4116368 YP_643382.1 CDS Rxyl_0599 NC_008148.1 627473 627859 R PFAM: regulatory protein, MarR regulatory protein, ArsR transcriptional regulator TrmB; KEGG: nfa:nfa31050 putative transcriptional regulator; TrmB/ArsR family transcriptional regulator complement(627473..627859) Rubrobacter xylanophilus DSM 9941 4116369 YP_643383.1 CDS Rxyl_0600 NC_008148.1 627891 628547 R PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: rpa:RPA0555 possible methyltransferase; type 11 methyltransferase complement(627891..628547) Rubrobacter xylanophilus DSM 9941 4116370 YP_643384.1 CDS Rxyl_0601 NC_008148.1 628534 629619 R PFAM: peptidase S1 and S6, chymotrypsin/Hap PDZ/DHR/GLGF; KEGG: fra:Francci3_1988 peptidase S1 and S6, chymotrypsin/Hap; hypothetical protein complement(628534..629619) Rubrobacter xylanophilus DSM 9941 4116371 YP_643385.1 CDS Rxyl_0602 NC_008148.1 629697 630053 D hypothetical protein 629697..630053 Rubrobacter xylanophilus DSM 9941 4116372 YP_643386.1 CDS Rxyl_0603 NC_008148.1 630050 630328 R hypothetical protein complement(630050..630328) Rubrobacter xylanophilus DSM 9941 4116373 YP_643387.1 CDS Rxyl_0604 NC_008148.1 630352 631794 R light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit B complement(630352..631794) Rubrobacter xylanophilus DSM 9941 4116374 YP_643388.1 CDS Rxyl_0605 NC_008148.1 631791 633134 R KEGG: cyb:CYB_1013 light-independent protochlorophyllide reductase, N subunit; hypothetical protein complement(631791..633134) Rubrobacter xylanophilus DSM 9941 4116375 YP_643389.1 CDS Rxyl_0606 NC_008148.1 633196 633906 R PFAM: purine and other phosphorylases, family 1; KEGG: ttj:TTHA1435 purine nucleoside phosphorylase; purine-nucleoside phosphorylase complement(633196..633906) Rubrobacter xylanophilus DSM 9941 4116376 YP_643390.1 CDS Rxyl_0607 NC_008148.1 633965 635230 R TIGRFAM: Pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase, family 3 Pyrimidine nucleoside phosphorylase-like; KEGG: dra:DR0443 pyrimidine-nucleoside phosphorylase; thymidine phosphorylase complement(633965..635230) Rubrobacter xylanophilus DSM 9941 4116377 YP_643391.1 CDS Rxyl_0608 NC_008148.1 635227 637164 R PFAM: peptidase S15 peptidase S9, prolyl oligopeptidase active site region; KEGG: cyb:CYB_2016 peptidase, S9C (acylaminoacyl-peptidase) family; peptidase S9, prolyl oligopeptidase active site region complement(635227..637164) Rubrobacter xylanophilus DSM 9941 4116378 YP_643392.1 CDS Rxyl_0609 NC_008148.1 637211 639148 R KEGG: ava:Ava_0969 putative amino acid transporter; putative amino acid transporter complement(637211..639148) Rubrobacter xylanophilus DSM 9941 4116379 YP_643393.1 CDS Rxyl_0610 NC_008148.1 639158 640336 R catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase complement(639158..640336) Rubrobacter xylanophilus DSM 9941 4116380 YP_643394.1 CDS Rxyl_0611 NC_008148.1 640450 640917 D PFAM: GCN5-related N-acetyltransferase; KEGG: det:DET1149 acetyltransferase, GNAT family; acetyltransferase 640450..640917 Rubrobacter xylanophilus DSM 9941 4116381 YP_643395.1 CDS Rxyl_0612 NC_008148.1 641462 642334 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase complement(641462..642334) Rubrobacter xylanophilus DSM 9941 4116382 YP_643396.1 CDS Rxyl_0613 NC_008148.1 642467 642919 D PFAM: regulatory protein, MarR; KEGG: ade:Adeh_0754 transcriptional regulator, MarR family; MarR family transcriptional regulator 642467..642919 Rubrobacter xylanophilus DSM 9941 4116383 YP_643397.1 CDS Rxyl_0614 NC_008148.1 642916 644739 D TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO3366 exporter; EmrB/QacA family drug resistance transporter 642916..644739 Rubrobacter xylanophilus DSM 9941 4116384 YP_643398.1 CDS Rxyl_0615 NC_008148.1 644741 645133 D hypothetical protein 644741..645133 Rubrobacter xylanophilus DSM 9941 4116385 YP_643399.1 CDS Rxyl_0616 NC_008148.1 645130 645378 D hypothetical protein 645130..645378 Rubrobacter xylanophilus DSM 9941 4116386 YP_643400.1 CDS Rxyl_0617 NC_008148.1 645375 646808 D PFAM: major facilitator superfamily MFS_1; KEGG: mta:Moth_0999 drug resistance transporter EmrB/QacA subfamily; major facilitator transporter 645375..646808 Rubrobacter xylanophilus DSM 9941 4116387 YP_643401.1 CDS Rxyl_0618 NC_008148.1 646937 649759 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 646937..649759 Rubrobacter xylanophilus DSM 9941 4116913 YP_643402.1 CDS Rxyl_0619 NC_008148.1 649770 650753 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: sth:STH3215 putative glycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 649770..650753 Rubrobacter xylanophilus DSM 9941 4116914 YP_643403.1 CDS murQ NC_008148.1 650810 651715 D catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase 650810..651715 Rubrobacter xylanophilus DSM 9941 4116915 YP_643404.1 CDS Rxyl_0621 NC_008148.1 651816 653099 D PFAM: extracellular solute-binding protein, family 1; KEGG: lxx:Lxx17590 sugar ABC transporter, sugar-binding protein; extracellular solute-binding protein 651816..653099 Rubrobacter xylanophilus DSM 9941 4116916 YP_643405.1 CDS Rxyl_0622 NC_008148.1 653131 654015 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02872 putative permease ABC transporter protein; binding-protein-dependent transport system inner membrane protein 653131..654015 Rubrobacter xylanophilus DSM 9941 4116917 YP_643406.1 CDS Rxyl_0623 NC_008148.1 654017 654874 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_06980 ABC-type sugar transport system, permease component; binding-protein-dependent transport system inner membrane protein 654017..654874 Rubrobacter xylanophilus DSM 9941 4116918 YP_643407.1 CDS Rxyl_0624 NC_008148.1 654871 655761 D PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: sth:STH292 hypothetical protein; BadF/BadG/BcrA/BcrD type ATPase 654871..655761 Rubrobacter xylanophilus DSM 9941 4116919 YP_643408.1 CDS Rxyl_0626 NC_008148.1 656682 657188 R KEGG: tma:TM1012 hypothetical protein; hypothetical protein complement(656682..657188) Rubrobacter xylanophilus DSM 9941 4116920 YP_643409.1 CDS Rxyl_0627 NC_008148.1 657194 658894 R PFAM: beta-lactamase; KEGG: sco:SCO7243 secreted protein; beta-lactamase complement(657194..658894) Rubrobacter xylanophilus DSM 9941 4116921 YP_643410.1 CDS Rxyl_0628 NC_008148.1 659066 660394 R PFAM: Uncharacterised conserved protein UCP016719; KEGG: sma:SAV6610 hypothetical protein; hypothetical protein complement(659066..660394) Rubrobacter xylanophilus DSM 9941 4116922 YP_643411.1 CDS Rxyl_0629 NC_008148.1 660405 662219 R PFAM: glycoside hydrolase, family 3-like; KEGG: sma:SAV5302 putative beta-N-acetylglucosaminidase; glycosyl hydrolase complement(660405..662219) Rubrobacter xylanophilus DSM 9941 4116923 YP_643412.1 CDS Rxyl_0630 NC_008148.1 662292 663059 D PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: gka:GK2275 transcriptional regulator (GntR family); GntR family transcriptional regulator 662292..663059 Rubrobacter xylanophilus DSM 9941 4116924 YP_643413.1 CDS Rxyl_0631 NC_008148.1 663076 663873 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gsu:GSU1603 3-oxoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR 663076..663873 Rubrobacter xylanophilus DSM 9941 4116925 YP_643414.1 CDS Rxyl_0632 NC_008148.1 664111 664308 D KEGG: nfa:nfa4260 hypothetical protein; hypothetical protein 664111..664308 Rubrobacter xylanophilus DSM 9941 4116926 YP_643415.1 CDS Rxyl_0633 NC_008148.1 664325 664999 D KEGG: sma:SAV2049 hypothetical protein; hypothetical protein 664325..664999 Rubrobacter xylanophilus DSM 9941 4116927 YP_643416.1 CDS Rxyl_0634 NC_008148.1 664996 666495 D TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid a,c-diamide synthase CobB/CobQ-like glutamine amidotransferase; KEGG: sma:SAV6416 putative cobyric acid synthase; adenosylcobyric acid synthase 664996..666495 Rubrobacter xylanophilus DSM 9941 4116928 YP_643417.1 CDS cobN NC_008148.1 666482 670195 D with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN 666482..670195 Rubrobacter xylanophilus DSM 9941 4116929 YP_643418.1 CDS Rxyl_0636 NC_008148.1 670192 672042 D PFAM: magnesium chelatase, ChlI subunit von Willebrand factor, type A ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: sco:SCO1850 putative chelatase; protoporphyrin IX magnesium-chelatase 670192..672042 Rubrobacter xylanophilus DSM 9941 4116930 YP_643419.1 CDS Rxyl_0637 NC_008148.1 672039 672614 D catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 672039..672614 Rubrobacter xylanophilus DSM 9941 4116931 YP_643420.1 CDS Rxyl_0638 NC_008148.1 672608 673960 D responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 672608..673960 Rubrobacter xylanophilus DSM 9941 4116504 YP_643421.1 CDS Rxyl_0639 NC_008148.1 673957 674673 D TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sco:SCO1853 precorrin-2 C20-methyltransferase; cobalt-factor II C20-methyltransferase/precorrin-2 C20-methyltransferase 673957..674673 Rubrobacter xylanophilus DSM 9941 4116505 YP_643422.1 CDS Rxyl_0640 NC_008148.1 674666 675439 D TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sma:SAV6409 putative methyltransferase; precorrin-4 C(11)-methyltransferase 674666..675439 Rubrobacter xylanophilus DSM 9941 4116506 YP_643423.1 CDS cbiD NC_008148.1 675432 676598 D Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 675432..676598 Rubrobacter xylanophilus DSM 9941 4116507 YP_643424.1 CDS Rxyl_0642 NC_008148.1 676586 677797 D KEGG: sma:SAV6408 precorrin-6Y C5,15-methyltransferase / precorrin-8W decarboxylase; TIGRFAM: Precorrin-6y C5,15-methyltransferase, subunit CbiE; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6Y C5,15-methyltransferase 676586..677797 Rubrobacter xylanophilus DSM 9941 4116508 YP_643425.1 CDS Rxyl_0643 NC_008148.1 677794 679479 D TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: sma:SAV6407 putative precorrin methylase; precorrin-3 methyltransferase 677794..679479 Rubrobacter xylanophilus DSM 9941 4116509 YP_643426.1 CDS Rxyl_0644 NC_008148.1 679476 679682 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: mma:MM2634 putative pyruvate:ferredoxin oxidoreductase; 4Fe-4S ferredoxin 679476..679682 Rubrobacter xylanophilus DSM 9941 4116510 YP_643427.1 CDS Rxyl_0645 NC_008148.1 679679 680278 D PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: sma:SAV6406 putative precorrin-8X methylmutase; precorrin-8X methylmutase 679679..680278 Rubrobacter xylanophilus DSM 9941 4116511 YP_643428.1 CDS Rxyl_0646 NC_008148.1 680268 681161 D PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: sma:SAV6405 putative metal binding protein; cobalamin (vitamin B12) biosynthesis CbiX protein 680268..681161 Rubrobacter xylanophilus DSM 9941 4116512 YP_643429.1 CDS Rxyl_0647 NC_008148.1 681145 682233 D PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: sco:SCO1554 putative nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase 681145..682233 Rubrobacter xylanophilus DSM 9941 4116513 YP_643430.1 CDS Rxyl_0648 NC_008148.1 682230 683000 D TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: mca:MCA0465 cobalamin 5'-phosphate synthase; cobalamin-5'-phosphate synthase 682230..683000 Rubrobacter xylanophilus DSM 9941 4116514 YP_643431.1 CDS Rxyl_0649 NC_008148.1 682997 683902 D TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: det:DET0688 cobalamin biosynthesis protein CobD; adenosylcobinamide-phosphate synthase 682997..683902 Rubrobacter xylanophilus DSM 9941 4116515 YP_643432.1 CDS Rxyl_0650 NC_008148.1 683905 685005 D TIGRFAM: L-threonine-O-3-phosphate decarboxylase, putative; PFAM: aminotransferase, class I and II; KEGG: det:DET0689 histidinol-phosphate aminotransferase, putative; L-threonine O-3-phosphate decarboxylase 683905..685005 Rubrobacter xylanophilus DSM 9941 4116516 YP_643433.1 CDS Rxyl_0651 NC_008148.1 685005 685625 D PFAM: Phosphoglycerate mutase; KEGG: mta:Moth_1105 phosphoglycerate/bisphosphoglycerate mutase; phosphoglycerate mutase 685005..685625 Rubrobacter xylanophilus DSM 9941 4116517 YP_643434.1 CDS Rxyl_0652 NC_008148.1 685622 686185 D PFAM: cobalbumin biosynthesis enzyme; SMART: ATPase; KEGG: det:DET0694 cobinamide kinase/cobinamide phosphate guanylyltransferase; adenosylcobinamide kinase 685622..686185 Rubrobacter xylanophilus DSM 9941 4116518 YP_643435.1 CDS Rxyl_0653 NC_008148.1 686182 686865 R PFAM: regulatory protein, MarR iron dependent repressor FeoA; KEGG: sru:SRU_2045 iron dependent repressor, putative; DtxR family iron dependent repressor complement(686182..686865) Rubrobacter xylanophilus DSM 9941 4116519 YP_643436.1 CDS Rxyl_0654 NC_008148.1 686983 688248 D TIGRFAM: NRAMP family Mn2+/Fe2+ transporters; PFAM: natural resistance-associated macrophage protein; KEGG: bld:BLi00526 manganese transporter; RBL02636; manganese transport protein MntH 686983..688248 Rubrobacter xylanophilus DSM 9941 4116520 YP_643437.1 CDS Rxyl_0655 NC_008148.1 688360 689172 D PFAM: zinc/iron permease; KEGG: dps:DP0096 GufA protein; zinc/iron permease 688360..689172 Rubrobacter xylanophilus DSM 9941 4116521 YP_643438.1 CDS Rxyl_0656 NC_008148.1 689391 690971 D KEGG: tcr:503617.20 kinetoplast DNA-associated protein Pfam: HC2 PROSITE: ALA_RICH GLU_RICH; chromosome segregation ATPases-like protein 689391..690971 Rubrobacter xylanophilus DSM 9941 4116522 YP_643439.1 CDS Rxyl_0657 NC_008148.1 691065 692414 D PFAM: major facilitator superfamily MFS_1; KEGG: gsu:GSU3264 membrane protein, putative; major facilitator transporter 691065..692414 Rubrobacter xylanophilus DSM 9941 4116523 YP_643440.1 CDS Rxyl_0658 NC_008148.1 692417 693577 D KEGG: sth:STH1280 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine 6-phosphate deacetylase 692417..693577 Rubrobacter xylanophilus DSM 9941 4114644 YP_643441.1 CDS Rxyl_0659 NC_008148.1 693581 694120 D PFAM: Appr-1-p processing; KEGG: sru:SRU_0547 Appr-1-p processing enzyme family protein; Appr-1-p processing 693581..694120 Rubrobacter xylanophilus DSM 9941 4114645 YP_643442.1 CDS Rxyl_0660 NC_008148.1 694144 694560 D PFAM: Methionine sulfoxide reductase B; KEGG: mth:MTH711 peptide methionine sulfoxide reductase; protein-methionine-S-oxide reductase 694144..694560 Rubrobacter xylanophilus DSM 9941 4114646 YP_643443.1 CDS Rxyl_0661 NC_008148.1 694601 696541 D PFAM: sulfatase; KEGG: ppu:PP1033 sulfatase domain protein; sulfatase 694601..696541 Rubrobacter xylanophilus DSM 9941 4114647 YP_643444.1 CDS Rxyl_0662 NC_008148.1 696606 698498 D PFAM: sulfatase; KEGG: ppu:PP1033 sulfatase domain protein; sulfatase 696606..698498 Rubrobacter xylanophilus DSM 9941 4114648 YP_643445.1 CDS Rxyl_0663 NC_008148.1 698577 699971 D PFAM: DNA photolyase, FAD-binding DNA photolyase-like; KEGG: sru:SRU_1754 deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photo-lyase type II 698577..699971 Rubrobacter xylanophilus DSM 9941 4114649 YP_643446.1 CDS Rxyl_0664 NC_008148.1 700013 700405 D PFAM: protein of unknown function DUF202; KEGG: sai:Saci_1091 membrane protein; hypothetical protein 700013..700405 Rubrobacter xylanophilus DSM 9941 4114650 YP_643447.1 CDS Rxyl_0665 NC_008148.1 700732 701196 D KEGG: cef:CE2616 hypothetical protein; hypothetical protein 700732..701196 Rubrobacter xylanophilus DSM 9941 4114651 YP_643448.1 CDS Rxyl_0666 NC_008148.1 701207 701656 D hypothetical protein 701207..701656 Rubrobacter xylanophilus DSM 9941 4114652 YP_643449.1 CDS Rxyl_0667 NC_008148.1 701643 702773 D PFAM: peptidase S1 and S6, chymotrypsin/Hap PDZ/DHR/GLGF; KEGG: fra:Francci3_1988 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6, chymotrypsin/Hap 701643..702773 Rubrobacter xylanophilus DSM 9941 4114653 YP_643450.1 CDS Rxyl_0668 NC_008148.1 702797 703081 D hypothetical protein 702797..703081 Rubrobacter xylanophilus DSM 9941 4114654 YP_643451.1 CDS Rxyl_0669 NC_008148.1 703097 704416 D PFAM: extracellular solute-binding protein, family 1; KEGG: bha:BH1244 putative multiple sugar transport system substrate-binding protein; extracellular solute-binding protein 703097..704416 Rubrobacter xylanophilus DSM 9941 4114655 YP_643452.1 CDS Rxyl_0670 NC_008148.1 704483 704989 D PFAM: MaoC-like dehydratase; KEGG: msy:MS53_0536 putative transcription regulatory protein; MaoC-like dehydratase 704483..704989 Rubrobacter xylanophilus DSM 9941 4114656 YP_643453.1 CDS Rxyl_0671 NC_008148.1 704967 705734 R KEGG: bpe:BP1549 DNA polymerase III subunit Tau; hypothetical protein complement(704967..705734) Rubrobacter xylanophilus DSM 9941 4114657 YP_643454.1 CDS Rxyl_0672 NC_008148.1 705879 706358 D PFAM: heat shock protein Hsp20; KEGG: gsu:GSU2678 heat shock protein, HSP20 family; heat shock protein Hsp20 705879..706358 Rubrobacter xylanophilus DSM 9941 4114658 YP_643455.1 CDS Rxyl_0673 NC_008148.1 706520 707344 D PFAM: sigma-70 region 3 sigma-70 region 2 sigma-70 region 4; KEGG: tte:TTE1755 DNA-directed RNA polymerase sigma subunits (sigma70/sigma32); RNA polymerase sigma-28 subunit 706520..707344 Rubrobacter xylanophilus DSM 9941 4114659 YP_643456.1 CDS Rxyl_0674 NC_008148.1 707341 707715 R hypothetical protein complement(707341..707715) Rubrobacter xylanophilus DSM 9941 4114660 YP_643457.1 CDS Rxyl_0675 NC_008148.1 707968 708459 D PFAM: heat shock protein Hsp20; KEGG: gsu:GSU0538 heat shock protein, HSP20 family; heat shock protein Hsp20 707968..708459 Rubrobacter xylanophilus DSM 9941 4114661 YP_643458.1 CDS Rxyl_0676 NC_008148.1 708568 711228 D PFAM: UvrB/UvrC protein AAA ATPase, central region Clp, N terminal ATPase associated with various cellular activities, AAA_5 ATPase AAA-2; SMART: ATPase; KEGG: sco:SCO6408 clp protease ATP binding subunit; ATPase 708568..711228 Rubrobacter xylanophilus DSM 9941 4114662 YP_643459.1 CDS Rxyl_0677 NC_008148.1 711236 711685 D KEGG: ava:Ava_C0146 hypothetical protein; hypothetical protein 711236..711685 Rubrobacter xylanophilus DSM 9941 4117282 YP_643460.1 CDS Rxyl_0678 NC_008148.1 711696 712535 D PFAM: protein of unknown function DUF114; KEGG: chy:CHY_2465 hypothetical protein; hypothetical protein 711696..712535 Rubrobacter xylanophilus DSM 9941 4117283 YP_643461.1 CDS Rxyl_0679 NC_008148.1 712564 713964 D SMART: Phospholipase D/Transphosphatidylase; KEGG: nmu:Nmul_A1712 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 712564..713964 Rubrobacter xylanophilus DSM 9941 4117284 YP_643462.1 CDS Rxyl_0680 NC_008148.1 714058 715656 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 714058..715656 Rubrobacter xylanophilus DSM 9941 4117285 YP_643463.1 CDS Rxyl_0681 NC_008148.1 715843 716736 D PFAM: manganese containing catalase; KEGG: ttj:TTHA0122 manganese-containing pseudocatalase; manganese containing catalase 715843..716736 Rubrobacter xylanophilus DSM 9941 4117286 YP_643464.1 CDS Rxyl_0682 NC_008148.1 716785 718425 R KEGG: gvi:glr3825 hypothetical protein; hypothetical protein complement(716785..718425) Rubrobacter xylanophilus DSM 9941 4117287 YP_643465.1 CDS Rxyl_0683 NC_008148.1 718498 719382 D PFAM: protein of unknown function DUF1206; KEGG: rba:RB1728 conserved hypothetical protein-putative integraal membrane protein; hypothetical protein 718498..719382 Rubrobacter xylanophilus DSM 9941 4117288 YP_643466.1 CDS Rxyl_0684 NC_008148.1 719384 719887 R PFAM: OsmC-like protein; KEGG: bja:blr0920 hypothetical protein; OsmC-like protein complement(719384..719887) Rubrobacter xylanophilus DSM 9941 4117289 YP_643467.1 CDS Rxyl_0685 NC_008148.1 719932 720924 R KEGG: sco:SCO0913 hypothetical protein; hypothetical protein complement(719932..720924) Rubrobacter xylanophilus DSM 9941 4117290 YP_643468.1 CDS Rxyl_0686 NC_008148.1 720921 721730 R KEGG: gvi:glr4332 hypothetical protein; hypothetical protein complement(720921..721730) Rubrobacter xylanophilus DSM 9941 4117291 YP_643469.1 CDS Rxyl_0687 NC_008148.1 721756 723069 R PFAM: protein of unknown function DUF323; KEGG: sma:SAV7340 hypothetical protein; hypothetical protein complement(721756..723069) Rubrobacter xylanophilus DSM 9941 4117292 YP_643470.1 CDS Rxyl_0688 NC_008148.1 723289 724620 D PFAM: Myo-inositol-1-phosphate synthase Myo-inositol-1-phosphate synthase, GAPDH-like; KEGG: ade:Adeh_1535 inositol-3-phosphate synthase; inositol-3-phosphate synthase 723289..724620 Rubrobacter xylanophilus DSM 9941 4117293 YP_643471.1 CDS Rxyl_0689 NC_008148.1 724625 725821 D PFAM: glycosyl transferase, group 1; KEGG: mca:MCA2126 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 724625..725821 Rubrobacter xylanophilus DSM 9941 4117294 YP_643472.1 CDS Rxyl_0690 NC_008148.1 725883 727067 D PFAM: glycosyl transferase, group 1; KEGG: mma:MM0650 mannosyltransferase; group 1 glycosyl transferase 725883..727067 Rubrobacter xylanophilus DSM 9941 4117295 YP_643473.1 CDS Rxyl_0691 NC_008148.1 727040 727849 R PFAM: sulfotransferase; KEGG: ssc:641359 sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1; sulfotransferase complement(727040..727849) Rubrobacter xylanophilus DSM 9941 4117296 YP_643474.1 CDS Rxyl_0692 NC_008148.1 727846 728808 R PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ade:Adeh_2797 zinc-binding alcohol dehydrogenase; zinc-binding alcohol dehydrogenase complement(727846..728808) Rubrobacter xylanophilus DSM 9941 4117297 YP_643475.1 CDS Rxyl_0693 NC_008148.1 728933 729475 D hypothetical protein 728933..729475 Rubrobacter xylanophilus DSM 9941 4117298 YP_643476.1 CDS Rxyl_0694 NC_008148.1 729563 729721 D PFAM: protein of unknown function UPF0057; KEGG: rru:Rru_A2519 hypothetical protein; hypothetical protein 729563..729721 Rubrobacter xylanophilus DSM 9941 4117299 YP_643477.1 CDS Rxyl_0695 NC_008148.1 729718 730497 R PFAM: inositol monophosphatase; KEGG: cte:CT1430 myo-inositol-1(or 4)-monophosphatase; histidinol-phosphate phosphatase complement(729718..730497) Rubrobacter xylanophilus DSM 9941 4117300 YP_643478.1 CDS Rxyl_0696 NC_008148.1 730630 731532 D PFAM: NLP/P60; KEGG: sth:STH1068 putative amidase; PgdS peptidase 730630..731532 Rubrobacter xylanophilus DSM 9941 4117301 YP_643479.1 CDS Rxyl_0697 NC_008148.1 731545 732567 R TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: gka:GK2791 protease IV (signal peptide peptidase); signal peptide peptidase A complement(731545..732567) Rubrobacter xylanophilus DSM 9941 4116582 YP_643480.1 CDS Rxyl_0698 NC_008148.1 732626 733504 R KEGG: tth:TTC1218 transcriptional regulator; transcriptional regulator complement(732626..733504) Rubrobacter xylanophilus DSM 9941 4116583 YP_643481.1 CDS Rxyl_0699 NC_008148.1 733574 734179 R related to the Icc protein-like; KEGG: tde:TDE1124 hypothetical protein; phosphoesterase complement(733574..734179) Rubrobacter xylanophilus DSM 9941 4116584 YP_643482.1 CDS Rxyl_0700 NC_008148.1 734284 734682 D PFAM: NUDIX hydrolase; KEGG: mth:MTH1315 mutator MutT protein; NUDIX hydrolase 734284..734682 Rubrobacter xylanophilus DSM 9941 4116585 YP_643483.1 CDS Rxyl_0701 NC_008148.1 734744 735217 D PFAM: protein of unknown function DUF107; KEGG: mth:MTH693 hypothetical protein; hypothetical protein 734744..735217 Rubrobacter xylanophilus DSM 9941 4116586 YP_643484.1 CDS Rxyl_0702 NC_008148.1 735214 736158 D PFAM: band 7 protein; KEGG: fra:Francci3_1352 band 7 protein; SPFH domain-containing protein/band 7 family protein 735214..736158 Rubrobacter xylanophilus DSM 9941 4116587 YP_643485.1 CDS Rxyl_0703 NC_008148.1 736145 736807 R PFAM: regulatory protein, LuxR response regulator receiver; KEGG: mpa:MAP0689c two-component system, NarL family, response regulator; two component LuxR family transcriptional regulator complement(736145..736807) Rubrobacter xylanophilus DSM 9941 4116588 YP_643486.1 CDS Rxyl_0704 NC_008148.1 736807 737949 R PFAM: ATP-binding region, ATPase-like histidine kinase, dimerisation and phosphoacceptor region; KEGG: sco:SCO6424 two-component system sensor protein; histidine kinase complement(736807..737949) Rubrobacter xylanophilus DSM 9941 4116589 YP_643487.1 CDS Rxyl_0705 NC_008148.1 737985 740321 R PFAM: glycoside hydrolase, family 31; KEGG: tfu:Tfu_1613 putative alpha-glucosidase; glycoside hydrolase family protein complement(737985..740321) Rubrobacter xylanophilus DSM 9941 4116590 YP_643488.1 CDS Rxyl_0706 NC_008148.1 740329 741057 R PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: nmu:Nmul_A1794 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(740329..741057) Rubrobacter xylanophilus DSM 9941 4116591 YP_643489.1 CDS Rxyl_0707 NC_008148.1 741144 741596 R KEGG: dge:Dgeo_1459 hypothetical protein; hypothetical protein complement(741144..741596) Rubrobacter xylanophilus DSM 9941 4116592 YP_643490.1 CDS Rxyl_0708 NC_008148.1 741615 742112 R KEGG: tfu:Tfu_1651 conserved hypothetical membrane-anchored protein; hypothetical protein complement(741615..742112) Rubrobacter xylanophilus DSM 9941 4116593 YP_643491.1 CDS Rxyl_0709 NC_008148.1 742255 742485 R KEGG: mpa:MAP2019c hypothetical protein; hypothetical protein complement(742255..742485) Rubrobacter xylanophilus DSM 9941 4116594 YP_643492.1 CDS Rxyl_0710 NC_008148.1 742540 743559 R PFAM: glycosyl transferase, family 9; KEGG: tfu:Tfu_0894 putative glycosyltransferase; glycosyl transferase family protein complement(742540..743559) Rubrobacter xylanophilus DSM 9941 4116595 YP_643493.1 CDS Rxyl_0711 NC_008148.1 743561 744928 R TIGRFAM: Cytidyltransferase-related RfaE bifunctional protein, domain II; PFAM: cytidylyltransferase PfkB; KEGG: sco:SCO6187 bifunctional synthase/transferase; bifunctional ADP-heptose synthase complement(743561..744928) Rubrobacter xylanophilus DSM 9941 4116596 YP_643494.1 CDS Rxyl_0712 NC_008148.1 744925 745503 R TIGRFAM: phosphoheptose isomerase; PFAM: sugar isomerase (SIS); KEGG: sco:SCO6186 putative phosphoheptose isomerase; phosphoheptose isomerase complement(744925..745503) Rubrobacter xylanophilus DSM 9941 4116597 YP_643495.1 CDS Rxyl_0713 NC_008148.1 745500 746717 R PFAM: glycosyl transferase, group 1; KEGG: mpa:MAP3246 hypothetical protein; group 1 glycosyl transferase complement(745500..746717) Rubrobacter xylanophilus DSM 9941 4116598 YP_643496.1 CDS Rxyl_0714 NC_008148.1 746708 747655 R PFAM: glycosyl transferase, group 1; KEGG: sco:SCO6184 transferase; group 1 glycosyl transferase complement(746708..747655) Rubrobacter xylanophilus DSM 9941 4116599 YP_643497.1 CDS Rxyl_0715 NC_008148.1 747652 748686 R PFAM: glycosyl transferase, family 9; KEGG: sco:SCO6183 transferase; glycosyl transferase family protein complement(747652..748686) Rubrobacter xylanophilus DSM 9941 4116600 YP_643498.1 CDS Rxyl_0716 NC_008148.1 748683 750188 R TIGRFAM: HAD-superfamily hydrolase subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1 Histidinol-phosphate phosphatase HAD-superfamily hydrolase subfamily IIIA; PFAM: glycosyl transferase, family 2 Haloacid dehalogenase-like hydrolase; KEGG: sco:SCO6181 transferase; HAD family hydrolase complement(748683..750188) Rubrobacter xylanophilus DSM 9941 4116524 YP_643499.1 CDS Rxyl_0717 NC_008148.1 750185 751837 R PFAM: Carbamoyltransferase; KEGG: sco:SCO6180 transferase; carbamoyltransferase complement(750185..751837) Rubrobacter xylanophilus DSM 9941 4116525 YP_643500.1 CDS Rxyl_0718 NC_008148.1 752212 752538 D hypothetical protein 752212..752538 Rubrobacter xylanophilus DSM 9941 4116526 YP_643501.1 CDS Rxyl_0719 NC_008148.1 752585 753637 D PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase Male sterility-like; KEGG: fra:Francci3_0814 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 752585..753637 Rubrobacter xylanophilus DSM 9941 4116527 YP_643502.1 CDS Rxyl_0720 NC_008148.1 753634 754803 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: sco:SCO6706 glutathione-dependent aldehyde dehydrogenase; alcohol dehydrogenase GroES-like protein 753634..754803 Rubrobacter xylanophilus DSM 9941 4116528 YP_643503.1 CDS Rxyl_0721 NC_008148.1 754897 755280 D KEGG: ana:all1996 hypothetical protein; hypothetical protein 754897..755280 Rubrobacter xylanophilus DSM 9941 4116529 YP_643504.1 CDS Rxyl_0722 NC_008148.1 755567 756274 D PFAM: sulfotransferase; KEGG: sru:SRU_1000 putative sulfotransferase protein; sulfotransferase 755567..756274 Rubrobacter xylanophilus DSM 9941 4116530 YP_643505.1 CDS Rxyl_0724 NC_008148.1 756577 757470 D TIGRFAM: conserved hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase Domain of unknown function DUF1731; KEGG: sru:SRU_0723 hypothetical protein; hypothetical protein 756577..757470 Rubrobacter xylanophilus DSM 9941 4116531 YP_643506.1 CDS Rxyl_0725 NC_008148.1 757480 758499 R PFAM: amino acid-binding ACT Prephenate dehydrogenase; KEGG: dra:DR1122 prephenate dehydrogenase; prephenate dehydrogenase complement(757480..758499) Rubrobacter xylanophilus DSM 9941 4116532 YP_643507.1 CDS Rxyl_0726 NC_008148.1 758523 759578 R TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class I and II; KEGG: chy:CHY_1929 histidinol-phosphate aminotransferase; histidinol phosphate aminotransferase complement(758523..759578) Rubrobacter xylanophilus DSM 9941 4116533 YP_643508.1 CDS Rxyl_0727 NC_008148.1 759710 760024 D PFAM: Chorismate mutase; KEGG: ttj:TTHA0388 phospho-2-dehydro-3-deoxyheptonate aldolase/chorismate mutase; chorismate mutase 759710..760024 Rubrobacter xylanophilus DSM 9941 4116534 YP_643509.1 CDS Rxyl_0728 NC_008148.1 760014 760808 D TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: mta:Moth_1335 phospho-2-dehydro-3-deoxyheptonate aldolase; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase 760014..760808 Rubrobacter xylanophilus DSM 9941 4116535 YP_643510.1 CDS Rxyl_0729 NC_008148.1 760905 762299 D PFAM: protein kinase tyrosine protein kinase; SMART: Serine/threonine protein kinase; KEGG: sth:STH1353 serine/threonine protein kinase; serine/threonine protein kinase 760905..762299 Rubrobacter xylanophilus DSM 9941 4116536 YP_643511.1 CDS Rxyl_0730 NC_008148.1 762325 763719 D PFAM: protein kinase tyrosine protein kinase; SMART: Serine/threonine protein kinase; KEGG: sth:STH1353 serine/threonine protein kinase; serine/threonine protein kinase 762325..763719 Rubrobacter xylanophilus DSM 9941 4116537 YP_643512.1 CDS Rxyl_0731 NC_008148.1 763716 764939 D PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: sth:STH417 serine proteinase; peptidase S1 and S6, chymotrypsin/Hap 763716..764939 Rubrobacter xylanophilus DSM 9941 4116538 YP_643513.1 CDS Rxyl_0732 NC_008148.1 764945 765154 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: gka:GK1356 cold shock protein; cold-shock DNA-binding protein family protein 764945..765154 Rubrobacter xylanophilus DSM 9941 4116539 YP_643514.1 CDS Rxyl_0733 NC_008148.1 765151 765846 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 765151..765846 Rubrobacter xylanophilus DSM 9941 4116540 YP_643515.1 CDS Rxyl_0734 NC_008148.1 765843 766109 R hypothetical protein complement(765843..766109) Rubrobacter xylanophilus DSM 9941 4116541 YP_643516.1 CDS Rxyl_0735 NC_008148.1 766244 766771 D PFAM: phosphoesterase, PA-phosphatase related; KEGG: pca:Pcar_2304 hypothetical protein; PA-phosphatase-like phosphoesterase 766244..766771 Rubrobacter xylanophilus DSM 9941 4116542 YP_643517.1 CDS Rxyl_0736 NC_008148.1 766821 767375 D hypothetical protein 766821..767375 Rubrobacter xylanophilus DSM 9941 4116543 YP_643518.1 CDS Rxyl_0737 NC_008148.1 767372 768064 D KEGG: bca:BCE2408 hypothetical protein; hypothetical protein 767372..768064 Rubrobacter xylanophilus DSM 9941 4116563 YP_643519.1 CDS Rxyl_0738 NC_008148.1 768120 769181 D PFAM: peptidase M18, aminopeptidase I peptidase M20 peptidase M42; KEGG: dra:DR0229 endoglucanase, putative; peptidase M42 768120..769181 Rubrobacter xylanophilus DSM 9941 4116564 YP_643520.1 CDS Rxyl_0739 NC_008148.1 769186 770070 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: mta:Moth_1215 protein of unknown function DUF6, transmembrane; hypothetical protein 769186..770070 Rubrobacter xylanophilus DSM 9941 4116565 YP_643521.1 CDS Rxyl_0740 NC_008148.1 770078 770458 D PFAM: histidine triad (HIT) protein; KEGG: sru:SRU_2792 hypothetical HIT-like protein slr1234; histidine triad (HIT) protein 770078..770458 Rubrobacter xylanophilus DSM 9941 4116566 YP_643522.1 CDS Rxyl_0741 NC_008148.1 770462 772129 R proposed role in polysaccahride synthesis; putative FAD-binding dehydrogenase complement(770462..772129) Rubrobacter xylanophilus DSM 9941 4116567 YP_643523.1 CDS Rxyl_0743 NC_008148.1 773317 774495 R PFAM: UBA/THIF-type NAD/FAD binding fold Rhodanese-like MoeZ/MoeB; KEGG: gvi:gll3412 molybdopterin biosynthesis MoeB protein homolog; UBA/THIF-type NAD/FAD binding domain-containing protein complement(773317..774495) Rubrobacter xylanophilus DSM 9941 4116568 YP_643524.1 CDS Rxyl_0744 NC_008148.1 774545 774820 R PFAM: thiamineS; KEGG: cyb:CYB_2074 ThiS domain protein; sulfur transfer protein ThiS complement(774545..774820) Rubrobacter xylanophilus DSM 9941 4116569 YP_643525.1 CDS Rxyl_0745 NC_008148.1 774839 775261 R SMART: Mov34/MPN/PAD-1; KEGG: gvi:gll3414 hypothetical protein; Mov34/MPN/PAD-1 complement(774839..775261) Rubrobacter xylanophilus DSM 9941 4116570 YP_643526.1 CDS Rxyl_0746 NC_008148.1 775264 776181 R KEGG: cyb:CYB_2315 putative cysteine synthase B; TIGRFAM: cysteine synthases; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; cysteine synthase-like protein complement(775264..776181) Rubrobacter xylanophilus DSM 9941 4116571 YP_643527.1 CDS Rxyl_0747 NC_008148.1 776351 777073 R PFAM: Chlorite dismutase; KEGG: dra:DR1481 hypothetical protein; chlorite dismutase complement(776351..777073) Rubrobacter xylanophilus DSM 9941 4116572 YP_643528.1 CDS Rxyl_0748 NC_008148.1 777077 778066 R PFAM: aldo/keto reductase; KEGG: nph:NP4488A predicted oxidoreductase 2; aldo/keto reductase complement(777077..778066) Rubrobacter xylanophilus DSM 9941 4116573 YP_643529.1 CDS Rxyl_0749 NC_008148.1 778318 779310 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: tel:tlr0333 hypothetical protein; rare lipoprotein A 778318..779310 Rubrobacter xylanophilus DSM 9941 4116574 YP_643530.1 CDS Rxyl_0750 NC_008148.1 779385 780233 D PFAM: 2-phosphosulfolactate phosphatase; KEGG: tma:TM0797 putative 2-phosphosulfolactate phosphatase; 2-phosphosulfolactate phosphatase 779385..780233 Rubrobacter xylanophilus DSM 9941 4116575 YP_643531.1 CDS Rxyl_0751 NC_008148.1 780723 781709 R TIGRFAM: ribonuclease BN, putative; PFAM: ribonuclease BN; KEGG: ppu:PP4560 ribonuclease BN, putative; ribonuclease BN complement(780723..781709) Rubrobacter xylanophilus DSM 9941 4116576 YP_643532.1 CDS Rxyl_0752 NC_008148.1 781813 783918 D KEGG: cac:CAC3567 topoisomerase B; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM DNA topoisomerase, type IA, central; SMART: DNA topoisomerase, type IA, domain 2 DNA topoisomerase, type IA, DNA-binding Toprim subdomain; DNA topoisomerase III 781813..783918 Rubrobacter xylanophilus DSM 9941 4116577 YP_643533.1 CDS Rxyl_0753 NC_008148.1 783978 785210 D PFAM: amine oxidase; KEGG: cyb:CYB_1193 amine oxidase, flavin-containing; amine oxidase 783978..785210 Rubrobacter xylanophilus DSM 9941 4116578 YP_643534.1 CDS Rxyl_0754 NC_008148.1 785210 785947 D PFAM: ABC transporter related; SMART: ATPase; KEGG: nph:NP0748A ABC-type transport system ATP-binding protein; ABC transporter-like protein 785210..785947 Rubrobacter xylanophilus DSM 9941 4116579 YP_643535.1 CDS Rxyl_0755 NC_008148.1 785937 786701 D PFAM: ABC-2 type transporter; KEGG: noc:Noc_2833 ABC transporter, inner membrane subunit; ABC transporter 785937..786701 Rubrobacter xylanophilus DSM 9941 4116580 YP_643536.1 CDS Rxyl_0756 NC_008148.1 786733 787869 D KEGG: fra:Francci3_4524 hypothetical protein; hypothetical protein 786733..787869 Rubrobacter xylanophilus DSM 9941 4116581 YP_643537.1 CDS Rxyl_0757 NC_008148.1 788000 789577 D TIGRFAM: choline/carnitine/betaine transport; PFAM: BCCT transporter; KEGG: cvi:CV4302 high-affinity choline transport protein; choline/carnitine/betaine transport protein 788000..789577 Rubrobacter xylanophilus DSM 9941 4116893 YP_643538.1 CDS Rxyl_0758 NC_008148.1 789628 791199 D PFAM: glucose-methanol-choline oxidoreductase FAD dependent oxidoreductase GMC oxidoreductase; KEGG: sma:SAV1621 putative oxidoreductase; glucose-methanol-choline oxidoreductase 789628..791199 Rubrobacter xylanophilus DSM 9941 4116894 YP_643539.1 CDS Rxyl_0759 NC_008148.1 791196 792650 D PFAM: aldehyde dehydrogenase; KEGG: gka:GK0374 aldehyde dehydrogenase; nonphosphorylating glyceraldehyde-3-phosphate dehydrogenase 791196..792650 Rubrobacter xylanophilus DSM 9941 4116895 YP_643540.1 CDS Rxyl_0760 NC_008148.1 792610 793500 R PFAM: aminotransferase, class IV; KEGG: rru:Rru_A1131 aminotransferase, class IV; class IV aminotransferase complement(792610..793500) Rubrobacter xylanophilus DSM 9941 4116896 YP_643541.1 CDS Rxyl_0761 NC_008148.1 793497 794939 R KEGG: mta:Moth_2108 para-aminobenzoate synthase component I; TIGRFAM: para-aminobenzoate synthase, component I; PFAM: Anthranilate synthase component I and chorismate binding protein Anthranilate synthase component I-like; aminodeoxychorismate synthase subunit I complement(793497..794939) Rubrobacter xylanophilus DSM 9941 4116897 YP_643542.1 CDS Rxyl_0762 NC_008148.1 795211 797649 D PFAM: FAD dependent oxidoreductase glycine cleavage T protein (aminomethyl transferase); KEGG: sma:SAV6951 putative sarcosine dehydrogenase; FAD dependent oxidoreductase 795211..797649 Rubrobacter xylanophilus DSM 9941 4116898 YP_643543.1 CDS Rxyl_0763 NC_008148.1 797661 798626 D PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: noc:Noc_2604 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent enzyme subunit beta 797661..798626 Rubrobacter xylanophilus DSM 9941 4116899 YP_643544.1 CDS Rxyl_0764 NC_008148.1 798706 799911 D PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: sil:SPO1648 aminomethyl transferase family protein; aminomethyltransferase 798706..799911 Rubrobacter xylanophilus DSM 9941 4116900 YP_643545.1 CDS Rxyl_0765 NC_008148.1 800009 800983 D PFAM: methylenetetrahydrofolate reductase; KEGG: hma:pNG7363 5,10-methylenetetrahydrofolate reductase; methylenetetrahydrofolate reductase 800009..800983 Rubrobacter xylanophilus DSM 9941 4116901 YP_643546.1 CDS Rxyl_0766 NC_008148.1 800987 802717 D catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 800987..802717 Rubrobacter xylanophilus DSM 9941 4116902 YP_643547.1 CDS Rxyl_0767 NC_008148.1 802788 804116 D KEGG: mlo:mlr4790 aminomethyltransferase; TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage system T protein 802788..804116 Rubrobacter xylanophilus DSM 9941 4116903 YP_643548.1 CDS solA NC_008148.1 804113 805399 D catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyltryptophan oxidase 804113..805399 Rubrobacter xylanophilus DSM 9941 4116904 YP_643549.1 CDS Rxyl_0769 NC_008148.1 805439 806221 D PFAM: regulatory proteins, IclR; KEGG: sma:SAV6954 putative IclR-family transcriptional regulator; IclR family transcriptional regulator 805439..806221 Rubrobacter xylanophilus DSM 9941 4116905 YP_643550.1 CDS Rxyl_0770 NC_008148.1 806321 807781 R PFAM: sulfatase; KEGG: dde:Dde_1201 sulfatase, putative; sulfatase complement(806321..807781) Rubrobacter xylanophilus DSM 9941 4116906 YP_643551.1 CDS Rxyl_0771 NC_008148.1 808266 809051 D KEGG: sso:SSO2555 hypothetical protein; hypothetical protein 808266..809051 Rubrobacter xylanophilus DSM 9941 4116907 YP_643552.1 CDS Rxyl_0772 NC_008148.1 809048 810013 D KEGG: sto:ST0670 hypothetical protein; hypothetical protein 809048..810013 Rubrobacter xylanophilus DSM 9941 4116908 YP_643553.1 CDS Rxyl_0773 NC_008148.1 810033 811637 D PFAM: amino acid permease-associated region; KEGG: sto:ST1858 hypothetical protein; amino acid permease-associated protein 810033..811637 Rubrobacter xylanophilus DSM 9941 4116909 YP_643554.1 CDS Rxyl_0774 NC_008148.1 811640 812371 R KEGG: jan:Jann_0339 hypothetical protein; hypothetical protein complement(811640..812371) Rubrobacter xylanophilus DSM 9941 4116910 YP_643555.1 CDS Rxyl_0775 NC_008148.1 812380 813780 R KEGG: cgb:cg2499 glycyl-tRNA synthetase (glycine--tRNA ligase); TIGRFAM: glycyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S) Anticodon-binding; glycyl-tRNA synthetase complement(812380..813780) Rubrobacter xylanophilus DSM 9941 4116911 YP_643556.1 CDS Rxyl_0776 NC_008148.1 813902 814468 D KEGG: dra:DR2371 hypothetical protein; hypothetical protein 813902..814468 Rubrobacter xylanophilus DSM 9941 4116912 YP_643557.1 CDS Rxyl_0777 NC_008148.1 814491 815444 D catalyzes the formation of 2-phospho-D-glyceroyl phosphate from ATP and 2-phospho-D-glycerate; 2-phosphoglycerate kinase 814491..815444 Rubrobacter xylanophilus DSM 9941 4116990 YP_643558.1 CDS Rxyl_0778 NC_008148.1 815497 815865 D hypothetical protein 815497..815865 Rubrobacter xylanophilus DSM 9941 4116991 YP_643559.1 CDS Rxyl_0779 NC_008148.1 815862 816473 D hypothetical protein 815862..816473 Rubrobacter xylanophilus DSM 9941 4116992 YP_643560.1 CDS Rxyl_0780 NC_008148.1 816445 816942 R hypothetical protein complement(816445..816942) Rubrobacter xylanophilus DSM 9941 4116993 YP_643561.1 CDS Rxyl_0781 NC_008148.1 816939 818105 R hypothetical protein complement(816939..818105) Rubrobacter xylanophilus DSM 9941 4116994 YP_643562.1 CDS Rxyl_0782 NC_008148.1 818095 819849 R TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like PAS fold-4 PAS fold; KEGG: sth:STH3307 two-component sensor histidine kinase; PAS/PAC sensor signal transduction histidine kinase complement(818095..819849) Rubrobacter xylanophilus DSM 9941 4116995 YP_643563.1 CDS Rxyl_0783 NC_008148.1 819974 820669 R PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: sth:STH750 two-component response regulator, probably involved in phosphate sensing; two component transcriptional regulator complement(819974..820669) Rubrobacter xylanophilus DSM 9941 4116996 YP_643564.1 CDS Rxyl_0784 NC_008148.1 820840 822750 D TIGRFAM: Chaperone DnaK; PFAM: Heat shock protein 70; KEGG: pca:Pcar_0107 chaperone protein DnaK; chaperone DnaK 820840..822750 Rubrobacter xylanophilus DSM 9941 4116997 YP_643565.1 CDS Rxyl_0785 NC_008148.1 822856 823479 D PFAM: GrpE protein; KEGG: sth:STH503 heat-shock protein; GrpE protein HSP-70 cofactor 822856..823479 Rubrobacter xylanophilus DSM 9941 4116998 YP_643566.1 CDS Rxyl_0786 NC_008148.1 823510 824631 D TIGRFAM: Chaperone DnaJ; PFAM: DnaJ central region heat shock protein DnaJ-like chaperone DnaJ-like; KEGG: nfa:nfa54070 putative heat shock protein; chaperone DnaJ 823510..824631 Rubrobacter xylanophilus DSM 9941 4116999 YP_643567.1 CDS Rxyl_0787 NC_008148.1 824622 825032 D PFAM: regulatory protein, MerR; KEGG: ttj:TTHA0508 transcriptional regulator, MerR family; MerR family transcriptional regulator 824622..825032 Rubrobacter xylanophilus DSM 9941 4117000 YP_643568.1 CDS Rxyl_0788 NC_008148.1 825033 825515 D KEGG: fra:Francci3_4443 rhomboid-like protein; hypothetical protein 825033..825515 Rubrobacter xylanophilus DSM 9941 4117001 YP_643569.1 CDS Rxyl_0789 NC_008148.1 825790 826323 D KEGG: mta:Moth_0937 vacuolar-type H+-ATPase subunit H; vacuolar-type H+-ATPase subunit H 825790..826323 Rubrobacter xylanophilus DSM 9941 4117002 YP_643570.1 CDS Rxyl_0790 NC_008148.1 826416 827150 R hypothetical protein complement(826416..827150) Rubrobacter xylanophilus DSM 9941 4117003 YP_643571.1 CDS Rxyl_0791 NC_008148.1 827155 827952 R PFAM: protein of unknown function DUF62; KEGG: tfu:Tfu_0222 hypothetical protein; hypothetical protein complement(827155..827952) Rubrobacter xylanophilus DSM 9941 4117004 YP_643572.1 CDS Rxyl_0792 NC_008148.1 827981 828994 R PFAM: Methicillin resistance protein; KEGG: mta:Moth_2408 methicillin resistance protein; methicillin resistance protein complement(827981..828994) Rubrobacter xylanophilus DSM 9941 4117005 YP_643573.1 CDS Rxyl_0793 NC_008148.1 829418 830983 R PFAM: glycosyl transferase, family 2 GAF GtrA-like protein; KEGG: tko:TK1909 dolichol-phosphate mannosyltransferase, fused to membrane-bound GtrA-like domain; putative GAF sensor protein complement(829418..830983) Rubrobacter xylanophilus DSM 9941 4117006 YP_643574.1 CDS Rxyl_0794 NC_008148.1 831036 831368 D PFAM: acylphosphatase; KEGG: ade:Adeh_0694 acylphosphatase; acylphosphatase 831036..831368 Rubrobacter xylanophilus DSM 9941 4117007 YP_643575.1 CDS Rxyl_0795 NC_008148.1 831365 832300 D PFAM: ribonuclease HII/HIII; KEGG: gka:GK2697 ribonuclease HIII (RNase HIII); RNase HII 831365..832300 Rubrobacter xylanophilus DSM 9941 4117008 YP_643576.1 CDS Rxyl_0796 NC_008148.1 832297 833319 D PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase aminotransferase, class I and II; KEGG: tma:TM1744 L-allo-threonine aldolase; L-threonine aldolase 832297..833319 Rubrobacter xylanophilus DSM 9941 4116172 YP_643577.1 CDS Rxyl_0797 NC_008148.1 833316 833789 D PFAM: GCN5-related N-acetyltransferase; KEGG: gvi:glr3626 hypothetical protein; N-acetyltransferase GCN5 833316..833789 Rubrobacter xylanophilus DSM 9941 4116173 YP_643578.1 CDS Rxyl_0798 NC_008148.1 833722 834246 R PFAM: GCN5-related N-acetyltransferase; KEGG: ana:all4217 hypothetical protein; N-acetyltransferase GCN5 complement(833722..834246) Rubrobacter xylanophilus DSM 9941 4116174 YP_643579.1 CDS Rxyl_0799 NC_008148.1 834712 836550 D TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II sugar isomerase (SIS); KEGG: ttj:TTHA1896 glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; glutamine--fructose-6-phosphate transaminase 834712..836550 Rubrobacter xylanophilus DSM 9941 4116175 YP_643580.1 CDS Rxyl_0800 NC_008148.1 836551 837429 R TIGRFAM: conserved hypothetical protein; PFAM: diacylglycerol kinase, catalytic region; KEGG: sth:STH2424 hypothetical protein; hypothetical protein complement(836551..837429) Rubrobacter xylanophilus DSM 9941 4116176 YP_643581.1 CDS Rxyl_0801 NC_008148.1 837476 837892 D TIGRFAM: holo-(acyl-carrier-protein) synthase phosphopantethiene--protein transferase domain; PFAM: 4'-phosphopantetheinyl transferase; KEGG: sth:STH2938 holo-(acyl-carrier-protein) synthase; holo-(acyl-carrier-protein) synthase 837476..837892 Rubrobacter xylanophilus DSM 9941 4116177 YP_643582.1 CDS Rxyl_0802 NC_008148.1 837915 839438 D PFAM: protein of unknown function UPF0031 YjeF-related protein-like; KEGG: gme:Gmet_1883 hypothetical protein; YjeF-like protein 837915..839438 Rubrobacter xylanophilus DSM 9941 4116178 YP_643583.1 CDS Rxyl_0803 NC_008148.1 839465 839947 D PFAM: CBS; KEGG: ava:Ava_1889 predicted signal transduction protein containing CBS domains; signal transduction protein 839465..839947 Rubrobacter xylanophilus DSM 9941 4116179 YP_643584.1 CDS Rxyl_0804 NC_008148.1 839958 841055 D KEGG: sth:STH2936 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase-like; alanine racemase 839958..841055 Rubrobacter xylanophilus DSM 9941 4116180 YP_643585.1 CDS Rxyl_0805 NC_008148.1 841039 841371 D hypothetical protein 841039..841371 Rubrobacter xylanophilus DSM 9941 4116181 YP_643586.1 CDS Rxyl_0806 NC_008148.1 841371 842114 D PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; KEGG: gvi:gll2924 tRNA nucleotidyltransferase (CCA-adding enzyme); metal dependent phosphohydrolase 841371..842114 Rubrobacter xylanophilus DSM 9941 4116182 YP_643587.1 CDS Rxyl_0807 NC_008148.1 842152 842385 D PFAM: PspC; KEGG: xoo:XOO2222 hypothetical protein; phage shock protein C, PspC 842152..842385 Rubrobacter xylanophilus DSM 9941 4116183 YP_643588.1 CDS Rxyl_0808 NC_008148.1 842391 843020 D TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: cvi:CV3454 probable DNA-directed DNA polymerase, bacteriophage-type; phage SPO1 DNA polymerase-like protein 842391..843020 Rubrobacter xylanophilus DSM 9941 4116184 YP_643589.1 CDS Rxyl_0809 NC_008148.1 843022 843468 D PFAM: protein of unknown function UPF0079; KEGG: mta:Moth_2160 protein of unknown function UPF0079; hypothetical protein 843022..843468 Rubrobacter xylanophilus DSM 9941 4116185 YP_643590.1 CDS Rxyl_0810 NC_008148.1 843462 844133 D PFAM: peptidase M22, glycoprotease; KEGG: sme:SMc01118 hypothetical protein; peptidase M22, glycoprotease 843462..844133 Rubrobacter xylanophilus DSM 9941 4116186 YP_643591.1 CDS Rxyl_0811 NC_008148.1 844145 844588 D TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: xac:XAC3563 ribosomal-protein-alanine acetyltransferase; 30S ribosomal protein S18 844145..844588 Rubrobacter xylanophilus DSM 9941 4116187 YP_643592.1 CDS Rxyl_0812 NC_008148.1 844809 845798 D KEGG: cpe:CPE2232 probable glycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, putative, glycoprotease family; PFAM: peptidase M22, glycoprotease; O-sialoglycoprotein endopeptidase 844809..845798 Rubrobacter xylanophilus DSM 9941 4116188 YP_643593.1 CDS Rxyl_0813 NC_008148.1 845882 847528 D PFAM: peptidase M23B; KEGG: sth:STH1076 hypothetical protein; peptidase M23B 845882..847528 Rubrobacter xylanophilus DSM 9941 4116189 YP_643594.1 CDS Rxyl_0814 NC_008148.1 847856 849478 D TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: tte:TTE0580 chaperonin GroEL (HSP60 family); chaperonin GroEL 847856..849478 Rubrobacter xylanophilus DSM 9941 4116190 YP_643595.1 CDS Rxyl_0815 NC_008148.1 849866 851026 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase 849866..851026 Rubrobacter xylanophilus DSM 9941 4116191 YP_643596.1 CDS guaA NC_008148.1 851032 852552 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 851032..852552 Rubrobacter xylanophilus DSM 9941 4117068 YP_643597.1 CDS Rxyl_0817 NC_008148.1 852588 853385 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: xcv:XCV0733 putative secreted protein; endonuclease/exonuclease/phosphatase 852588..853385 Rubrobacter xylanophilus DSM 9941 4117069 YP_643598.1 CDS Rxyl_0818 NC_008148.1 853516 854628 D TIGRFAM: Periplasmic phosphate binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: gme:Gmet_2701 periplasmic phosphate binding protein; periplasmic phosphate binding protein 853516..854628 Rubrobacter xylanophilus DSM 9941 4117070 YP_643599.1 CDS Rxyl_0819 NC_008148.1 854706 855653 D TIGRFAM: Phosphate ABC transporter, permease protein PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gme:Gmet_2702 phosphate ABC transporter, permease protein PstC; phosphate ABC transporter permease 854706..855653 Rubrobacter xylanophilus DSM 9941 4117071 YP_643600.1 CDS Rxyl_0820 NC_008148.1 855650 856525 D TIGRFAM: Phosphate transport system permease protein 2; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV4074 putative phosphate ABC transporter permease protein; phosphate ABC transporter permease 855650..856525 Rubrobacter xylanophilus DSM 9941 4117072 YP_643601.1 CDS Rxyl_0821 NC_008148.1 856554 857414 D KEGG: tfu:Tfu_2743 phosphate transport system permease protein 1; TIGRFAM: Phosphate transport system permease protein 1; PFAM: ABC transporter related; SMART: ATPase; phosphate ABC transporter permease 856554..857414 Rubrobacter xylanophilus DSM 9941 4117073 YP_643602.1 CDS Rxyl_0822 NC_008148.1 857419 858114 D KEGG: tfu:Tfu_2908 PhoU; phosphate uptake regulator PhoU 857419..858114 Rubrobacter xylanophilus DSM 9941 4117074 YP_643603.1 CDS Rxyl_0823 NC_008148.1 858184 858636 D PFAM: protein of unknown function UPF0074; KEGG: mta:Moth_1653 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 858184..858636 Rubrobacter xylanophilus DSM 9941 4117075 YP_643604.1 CDS Rxyl_0824 NC_008148.1 858693 859295 D PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: plt:Plut_1626 hypothetical protein; type 12 methyltransferase 858693..859295 Rubrobacter xylanophilus DSM 9941 4117076 YP_643605.1 CDS Rxyl_0825 NC_008148.1 859358 861442 D PFAM: UvrD/REP helicase; KEGG: gka:GK0275 ATP-dependent DNA helicase; ATP-dependent DNA helicase PcrA 859358..861442 Rubrobacter xylanophilus DSM 9941 4117077 YP_643606.1 CDS Rxyl_0826 NC_008148.1 861475 863097 D catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 861475..863097 Rubrobacter xylanophilus DSM 9941 4117078 YP_643607.1 CDS Rxyl_0827 NC_008148.1 863097 863951 D PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: mta:Moth_1516 methenyltetrahydrofolate cyclohydrolase; methenyltetrahydrofolate cyclohydrolase 863097..863951 Rubrobacter xylanophilus DSM 9941 4117079 YP_643608.1 CDS Rxyl_0828 NC_008148.1 864019 864912 D PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: mca:MCA2703 serine protease, trypsin family; peptidase S1 and S6, chymotrypsin/Hap 864019..864912 Rubrobacter xylanophilus DSM 9941 4117080 YP_643609.1 CDS Rxyl_0829 NC_008148.1 864987 865268 D TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; KEGG: mpa:MAP3046c glutamyl-tRNA (Gln) amidotransferase subunit C; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C 864987..865268 Rubrobacter xylanophilus DSM 9941 4117081 YP_643610.1 CDS Rxyl_0830 NC_008148.1 865273 866718 D TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; KEGG: mta:Moth_2009 glutamyl-tRNA(Gln) amidotransferase, A subunit; aspartyl/glutamyl-tRNA amidotransferase subunit A 865273..866718 Rubrobacter xylanophilus DSM 9941 4117082 YP_643611.1 CDS Rxyl_0831 NC_008148.1 866802 867782 D PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: sth:STH770 LacI family transcriptional repressor; LacI family transcriptional regulator 866802..867782 Rubrobacter xylanophilus DSM 9941 4117083 YP_643612.1 CDS Rxyl_0832 NC_008148.1 867803 869236 D PFAM: L-fucose isomerase-like L-fucose isomerase, N-terminal_2; KEGG: tma:TM0307 L-fucose isomerase, putative; L-fucose isomerase 867803..869236 Rubrobacter xylanophilus DSM 9941 4117084 YP_643613.1 CDS Rxyl_0833 NC_008148.1 869233 870729 D PFAM: carbohydrate kinase, FGGY; KEGG: sma:SAV1126 putative xylulose kinase; carbohydrate kinase 869233..870729 Rubrobacter xylanophilus DSM 9941 4117085 YP_643614.1 CDS gatB NC_008148.1 870749 872254 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 870749..872254 Rubrobacter xylanophilus DSM 9941 4117086 YP_643615.1 CDS Rxyl_0835 NC_008148.1 872262 873503 D KEGG: lxx:Lxx13210 dihydroxy-acid dehydratase protein; dihydroxyacid dehydratase/phosphogluconate dehydratase-like protein 872262..873503 Rubrobacter xylanophilus DSM 9941 4117126 YP_643616.1 CDS Rxyl_0836 NC_008148.1 873591 874793 D PFAM: aminotransferase, class V; KEGG: tma:TM1400 putative aminotransferase; phosphoserine aminotransferase/L-aspartate aminotransferase 873591..874793 Rubrobacter xylanophilus DSM 9941 4117127 YP_643617.1 CDS Rxyl_0837 NC_008148.1 874790 876373 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 874790..876373 Rubrobacter xylanophilus DSM 9941 4117128 YP_643618.1 CDS Rxyl_0838 NC_008148.1 876429 876827 R KEGG: cef:CE2216 hypothetical protein; hypothetical protein complement(876429..876827) Rubrobacter xylanophilus DSM 9941 4117129 YP_643619.1 CDS Rxyl_0839 NC_008148.1 876994 877209 D hypothetical protein 876994..877209 Rubrobacter xylanophilus DSM 9941 4117130 YP_643620.1 CDS Rxyl_0841 NC_008148.1 877865 879022 R PFAM: Methionine synthase, vitamin-B12 independent; KEGG: pto:PTO0186 methionine synthase; methionine synthase (B12-independent) complement(877865..879022) Rubrobacter xylanophilus DSM 9941 4117131 YP_643621.1 CDS Rxyl_0842 NC_008148.1 879026 879961 R PFAM: Cobalamin-independent synthase MetE-like; KEGG: ape:APE2050 hypothetical protein; cobalamin-independent synthase MetE-like protein complement(879026..879961) Rubrobacter xylanophilus DSM 9941 4117132 YP_643622.1 CDS Rxyl_0843 NC_008148.1 880005 881840 R catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions; bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase complement(880005..881840) Rubrobacter xylanophilus DSM 9941 4117133 YP_643623.1 CDS Rxyl_0844 NC_008148.1 882062 883003 R PFAM: Squalene/phytoene synthase; KEGG: plt:Plut_1356 phytoene desaturase; phytoene synthase complement(882062..883003) Rubrobacter xylanophilus DSM 9941 4117134 YP_643624.1 CDS Rxyl_0845 NC_008148.1 883000 884478 R PFAM: amine oxidase FAD dependent oxidoreductase; KEGG: lpl:lp_3262 squalene synthase; amine oxidase complement(883000..884478) Rubrobacter xylanophilus DSM 9941 4117135 YP_643625.1 CDS Rxyl_0846 NC_008148.1 884597 885772 D PFAM: conserved hypothetical protein 95 methyltransferase small; SMART: PUA; KEGG: ade:Adeh_3722 hypothetical protein; SAM-dependent methyltransferase 884597..885772 Rubrobacter xylanophilus DSM 9941 4117136 YP_643626.1 CDS Rxyl_0847 NC_008148.1 885777 888344 R PFAM: protein of unknown function DUF214; KEGG: fra:Francci3_2636 protein of unknown function DUF214; hypothetical protein complement(885777..888344) Rubrobacter xylanophilus DSM 9941 4117137 YP_643627.1 CDS Rxyl_0848 NC_008148.1 888346 889095 R PFAM: ABC transporter related; SMART: ATPase; KEGG: sco:SCO4666 putative ABC-transporter ATP-binding protein; ABC transporter-like protein complement(888346..889095) Rubrobacter xylanophilus DSM 9941 4117138 YP_643628.1 CDS Rxyl_0849 NC_008148.1 889168 889611 D PFAM: ribosomal protein S6; KEGG: chy:CHY_0035 ribosomal protein S6; 30S ribosomal protein S6 889168..889611 Rubrobacter xylanophilus DSM 9941 4117139 YP_643629.1 CDS Rxyl_0850 NC_008148.1 889634 889879 D PFAM: ribosomal protein S18; KEGG: sma:SAV4287 putative ribosomal protein S18; 30S ribosomal protein S18 889634..889879 Rubrobacter xylanophilus DSM 9941 4117140 YP_643630.1 CDS Rxyl_0851 NC_008148.1 889896 890345 D PFAM: ribosomal protein L9; KEGG: ade:Adeh_0116 ribosomal protein L9; 50S ribosomal protein L9 889896..890345 Rubrobacter xylanophilus DSM 9941 4117141 YP_643631.1 CDS Rxyl_0852 NC_008148.1 890490 891821 D TIGRFAM: replicative DNA helicase; PFAM: DnaB-like helicase-like; KEGG: tte:TTE2774 replicative DNA helicase; primary replicative DNA helicase 890490..891821 Rubrobacter xylanophilus DSM 9941 4117142 YP_643632.1 CDS Rxyl_0853 NC_008148.1 891828 892607 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase complement(891828..892607) Rubrobacter xylanophilus DSM 9941 4117143 YP_643633.1 CDS Rxyl_0854 NC_008148.1 892711 894729 R PFAM: sulfatase; KEGG: ppu:PP1033 sulfatase domain protein; sulfatase complement(892711..894729) Rubrobacter xylanophilus DSM 9941 4117144 YP_643634.1 CDS Rxyl_0855 NC_008148.1 894806 895339 D PFAM: Tetratricopeptide TPR_2; hypothetical protein 894806..895339 Rubrobacter xylanophilus DSM 9941 4117145 YP_643635.1 CDS Rxyl_0856 NC_008148.1 895446 897380 D TIGRFAM: Acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: sth:STH881 acetyl-coenzyme A synthetase; acetyl-coenzyme A synthetase 895446..897380 Rubrobacter xylanophilus DSM 9941 4117186 YP_643636.1 CDS Rxyl_0857 NC_008148.1 897445 897726 R PFAM: Peptidoglycan-binding LysM; KEGG: sth:STH1735 hypothetical protein; peptidoglycan-binding LysM complement(897445..897726) Rubrobacter xylanophilus DSM 9941 4117187 YP_643637.1 CDS Rxyl_0858 NC_008148.1 897892 898536 D PFAM: peptidase, membrane zinc metallopeptidase, putative; KEGG: tth:TTC0540 hypothetical membrane spanning protein; peptidase, membrane zinc metallopeptidase 897892..898536 Rubrobacter xylanophilus DSM 9941 4117188 YP_643638.1 CDS Rxyl_0859 NC_008148.1 898646 899269 D hypothetical protein 898646..899269 Rubrobacter xylanophilus DSM 9941 4117189 YP_643639.1 CDS Rxyl_0860 NC_008148.1 899289 899993 D PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: syw:SYNW0275 global nitrogen regulatory protein, CRP family of transcriptional regulators; Crp/FNR family transcriptional regulator 899289..899993 Rubrobacter xylanophilus DSM 9941 4117190 YP_643640.1 CDS Rxyl_0861 NC_008148.1 899990 901351 R PFAM: metal-dependent phosphohydrolase, HD subdomain; KEGG: chy:CHY_0160 HDIG domain protein; metal dependent phosphohydrolase complement(899990..901351) Rubrobacter xylanophilus DSM 9941 4117191 YP_643641.1 CDS Rxyl_0862 NC_008148.1 902022 903671 D KEGG: ade:Adeh_2860 hypothetical protein; hypothetical protein 902022..903671 Rubrobacter xylanophilus DSM 9941 4117192 YP_643642.1 CDS Rxyl_0863 NC_008148.1 903757 904365 D PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: gka:GK0150 DNA-directed RNA polymerase ECF-type sigma factor (sigma-W); ECF subfamily RNA polymerase sigma-24 factor 903757..904365 Rubrobacter xylanophilus DSM 9941 4117193 YP_643643.1 CDS Rxyl_0864 NC_008148.1 904362 904862 D hypothetical protein 904362..904862 Rubrobacter xylanophilus DSM 9941 4117194 YP_643644.1 CDS Rxyl_0865 NC_008148.1 904859 905926 D KEGG: hma:rrnAC0202 hypothetical protein; hypothetical protein 904859..905926 Rubrobacter xylanophilus DSM 9941 4117195 YP_643645.1 CDS Rxyl_0866 NC_008148.1 906182 907903 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: gka:GK0811 oligopeptide ABC transporter (oligopeptide-binding protein); twin-arginine translocation pathway signal protein 906182..907903 Rubrobacter xylanophilus DSM 9941 4117196 YP_643646.1 CDS Rxyl_0867 NC_008148.1 907994 908920 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gka:GK0812 oligopeptide ABC transporter (permease); binding-protein-dependent transport system inner membrane protein 907994..908920 Rubrobacter xylanophilus DSM 9941 4117197 YP_643647.1 CDS Rxyl_0868 NC_008148.1 908917 909861 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gka:GK0813 oligopeptide ABC transporter (permease); binding-protein-dependent transport system inner membrane protein 908917..909861 Rubrobacter xylanophilus DSM 9941 4117198 YP_643648.1 CDS Rxyl_0869 NC_008148.1 909864 910895 D KEGG: gka:GK0814 oligopeptide ABC transporter (ATP-binding protein); TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein 909864..910895 Rubrobacter xylanophilus DSM 9941 4117199 YP_643649.1 CDS Rxyl_0870 NC_008148.1 910892 911860 D KEGG: bcl:ABC0783 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein 910892..911860 Rubrobacter xylanophilus DSM 9941 4117200 YP_643650.1 CDS Rxyl_0871 NC_008148.1 911857 912723 D PFAM: protein of unknown function DUF1028; KEGG: gka:GK1588 hypothetical protein; hypothetical protein 911857..912723 Rubrobacter xylanophilus DSM 9941 4117201 YP_643651.1 CDS Rxyl_0872 NC_008148.1 912890 914515 D PFAM: extracellular solute-binding protein, family 5; KEGG: bld:BLi01226 oligopeptide ABC transporter (oligopeptide-binding protein); RBL00623; extracellular solute-binding protein 912890..914515 Rubrobacter xylanophilus DSM 9941 4117202 YP_643652.1 CDS Rxyl_0873 NC_008148.1 914643 915605 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ttj:TTHA1633 peptide ABC transporter permease protein; binding-protein-dependent transport systems inner membrane component 914643..915605 Rubrobacter xylanophilus DSM 9941 4117203 YP_643653.1 CDS Rxyl_0874 NC_008148.1 915623 916555 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gsu:GSU1435 peptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 915623..916555 Rubrobacter xylanophilus DSM 9941 4117204 YP_643654.1 CDS Rxyl_0875 NC_008148.1 916557 917576 D KEGG: sth:STH2824 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein 916557..917576 Rubrobacter xylanophilus DSM 9941 4116970 YP_643655.1 CDS Rxyl_0876 NC_008148.1 917573 918610 D KEGG: sth:STH2823 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein 917573..918610 Rubrobacter xylanophilus DSM 9941 4116971 YP_643656.1 CDS Rxyl_0877 NC_008148.1 918649 919902 D KEGG: bld:BLi02281 carboxy-terminal processing protease; RBL02710; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF peptidase S41; carboxyl-terminal protease 918649..919902 Rubrobacter xylanophilus DSM 9941 4116972 YP_643657.1 CDS Rxyl_0878 NC_008148.1 919951 920409 D KEGG: tfu:Tfu_0892 hypothetical protein; hypothetical protein 919951..920409 Rubrobacter xylanophilus DSM 9941 4116973 YP_643658.1 CDS Rxyl_0879 NC_008148.1 920658 921755 R PFAM: sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 sigma-70 region 1.2; KEGG: mta:Moth_0624 sigma 38 (RpoS); RNA polymerase sigma-28 subunit complement(920658..921755) Rubrobacter xylanophilus DSM 9941 4116974 YP_643659.1 CDS Rxyl_0880 NC_008148.1 921780 922634 D KEGG: sth:STH2507 hypothetical protein; GTPase domain-containing protein 921780..922634 Rubrobacter xylanophilus DSM 9941 4116975 YP_643660.1 CDS Rxyl_0881 NC_008148.1 922691 923197 R PFAM: regulatory protein, MarR; KEGG: bja:bll4976 transcriptional regulatory protein; MarR family transcriptional regulator complement(922691..923197) Rubrobacter xylanophilus DSM 9941 4116976 YP_643661.1 CDS Rxyl_0882 NC_008148.1 923388 924149 D PFAM: regulatory protein, LuxR; KEGG: sma:SAV7331 putative LuxR-family transcriptional regulator; LuxR family transcriptional regulator 923388..924149 Rubrobacter xylanophilus DSM 9941 4116977 YP_643662.1 CDS Rxyl_0883 NC_008148.1 924725 925111 D KEGG: nfa:nfa18160 hypothetical protein; hypothetical protein 924725..925111 Rubrobacter xylanophilus DSM 9941 4116978 YP_643663.1 CDS Rxyl_0884 NC_008148.1 925333 925908 D PFAM: protein of unknown function DUF861, cupin_3 Cupin 2, conserved barrel; KEGG: bha:BH0370 hypothetical protein; cupin 2 barrel domain-containing protein 925333..925908 Rubrobacter xylanophilus DSM 9941 4116979 YP_643664.1 CDS Rxyl_0885 NC_008148.1 925993 926442 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Rieske [2Fe-2S] region; KEGG: gme:Gmet_1922 Rieske (2Fe-2S) region; twin-arginine translocation pathway signal protein 925993..926442 Rubrobacter xylanophilus DSM 9941 4116980 YP_643665.1 CDS Rxyl_0886 NC_008148.1 926457 926960 D hypothetical protein 926457..926960 Rubrobacter xylanophilus DSM 9941 4116981 YP_643666.1 CDS Rxyl_0887 NC_008148.1 926977 928257 D KEGG: tfu:Tfu_2817 phospholipase D/Transphosphatidylase; phospholipase D/transphosphatidylase 926977..928257 Rubrobacter xylanophilus DSM 9941 4116982 YP_643667.1 CDS Rxyl_0888 NC_008148.1 928343 929983 D PFAM: phosphoesterase, RecJ-like phosphoesterase, DHHA1; KEGG: ade:Adeh_2536 single-stranded-DNA-specific exonuclease RecJ; phosphoesterase, RecJ-like protein 928343..929983 Rubrobacter xylanophilus DSM 9941 4116983 YP_643668.1 CDS Rxyl_0889 NC_008148.1 929980 930939 D PFAM: ROK; KEGG: tfu:Tfu_0273 glucokinase ROK; glucokinase 929980..930939 Rubrobacter xylanophilus DSM 9941 4116984 YP_643669.1 CDS Rxyl_0890 NC_008148.1 930946 931746 D TIGRFAM: Protein of unknown function UPF0011; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: tte:TTE0104 predicted methyltransferases; hypothetical protein 930946..931746 Rubrobacter xylanophilus DSM 9941 4116985 YP_643670.1 CDS Rxyl_0891 NC_008148.1 931781 932533 D PFAM: TatD-related deoxyribonuclease; KEGG: bba:Bd1042 TatD related DNase; Sec-independent protein translocase TatD 931781..932533 Rubrobacter xylanophilus DSM 9941 4116986 YP_643671.1 CDS Rxyl_0892 NC_008148.1 932530 933318 D TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: chy:CHY_2616 dimethyladenosine transferase; dimethyladenosine transferase 932530..933318 Rubrobacter xylanophilus DSM 9941 4116987 YP_643672.1 CDS Rxyl_0893 NC_008148.1 933315 934193 D TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase GHMP kinase, C terminal; KEGG: mta:Moth_0072 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 933315..934193 Rubrobacter xylanophilus DSM 9941 4116988 YP_643673.1 CDS Rxyl_0894 NC_008148.1 934360 935766 D PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase transferase hexapeptide repeat Nucleotidyl transferase; KEGG: tte:TTE2572 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; glucosamine-1-phosphate N-acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase 934360..935766 Rubrobacter xylanophilus DSM 9941 4116989 YP_643674.1 CDS Rxyl_0895 NC_008148.1 935775 936770 D KEGG: cac:CAC3221 phosphoribosylpyrophosphate synthetase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 935775..936770 Rubrobacter xylanophilus DSM 9941 4116718 YP_643675.1 CDS Rxyl_0896 NC_008148.1 936816 937496 D TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: mta:Moth_0078 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; 50S ribosomal protein L25 936816..937496 Rubrobacter xylanophilus DSM 9941 4116719 YP_643676.1 CDS Rxyl_0897 NC_008148.1 937568 938086 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 937568..938086 Rubrobacter xylanophilus DSM 9941 4116720 YP_643677.1 CDS Rxyl_0898 NC_008148.1 938083 939048 R PFAM: regulatory protein GntR, HTH protein of unknown function UPF0074; KEGG: sth:STH2673 GntR family transcriptional regulator; GntR family transcriptional regulator complement(938083..939048) Rubrobacter xylanophilus DSM 9941 4116721 YP_643678.1 CDS Rxyl_0899 NC_008148.1 939134 939703 D hypothetical protein 939134..939703 Rubrobacter xylanophilus DSM 9941 4116722 YP_643679.1 CDS Rxyl_0900 NC_008148.1 939752 940327 D PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: tfu:Tfu_1506 similar to DNA-directed RNA polymerase specialized sigma subunit sigma24 -like protein; ECF subfamily RNA polymerase sigma-24 factor 939752..940327 Rubrobacter xylanophilus DSM 9941 4116723 YP_643680.1 CDS Rxyl_0901 NC_008148.1 940324 941088 D TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: tfu:Tfu_1507 methylated-DNA-(protein)-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase 940324..941088 Rubrobacter xylanophilus DSM 9941 4116724 YP_643681.1 CDS Rxyl_0902 NC_008148.1 941067 941978 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: rso:RSc2507 probable transmembrane protein; hypothetical protein 941067..941978 Rubrobacter xylanophilus DSM 9941 4116725 YP_643682.1 CDS Rxyl_0903 NC_008148.1 942029 943393 D PFAM: FAD dependent oxidoreductase; KEGG: tfu:Tfu_2058 hypothetical protein; FAD dependent oxidoreductase 942029..943393 Rubrobacter xylanophilus DSM 9941 4116726 YP_643683.1 CDS Rxyl_0904 NC_008148.1 943423 944883 D PFAM: aldehyde dehydrogenase; KEGG: jan:Jann_3072 aldehyde dehydrogenase; aldehyde dehydrogenase 943423..944883 Rubrobacter xylanophilus DSM 9941 4116727 YP_643684.1 CDS Rxyl_0905 NC_008148.1 944921 945535 R TIGRFAM: HAD-superfamily hydrolase subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: nfa:nfa24610 putative hydrolase; HAD family hydrolase complement(944921..945535) Rubrobacter xylanophilus DSM 9941 4116728 YP_643685.1 CDS Rxyl_0906 NC_008148.1 945568 945918 R PFAM: helix-turn-helix, HxlR type; KEGG: fra:Francci3_3884 putative transcriptional regulator; HxlR family transcriptional regulator complement(945568..945918) Rubrobacter xylanophilus DSM 9941 4116729 YP_643686.1 CDS Rxyl_0907 NC_008148.1 946021 946428 D PFAM: DoxX; KEGG: psb:Psyr_2062 DoxD-like family protein; DoxX 946021..946428 Rubrobacter xylanophilus DSM 9941 4116730 YP_643687.1 CDS Rxyl_0908 NC_008148.1 946471 946884 R TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: thioesterase superfamily; KEGG: eba:ebA5330 conserved hypothetical protein, of thioesterase family; phenylacetic acid degradation-like protein complement(946471..946884) Rubrobacter xylanophilus DSM 9941 4116731 YP_643688.1 CDS Rxyl_0909 NC_008148.1 947024 950188 D TIGRFAM: transcription-repair coupling factor; PFAM: helicase-like transcription factor CarD TRCF type III restriction enzyme, res subunit DEAD/DEAH box helicase-like; KEGG: mpa:MAP0987 Mfd; transcription-repair coupling factor 947024..950188 Rubrobacter xylanophilus DSM 9941 4116732 YP_643689.1 CDS Rxyl_0910 NC_008148.1 950195 950707 D PFAM: protein of unknown function DUF523; KEGG: bbr:BB4660 hypothetical protein; hypothetical protein 950195..950707 Rubrobacter xylanophilus DSM 9941 4116733 YP_643690.1 CDS Rxyl_0911 NC_008148.1 950725 951789 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: sth:STH2943 putative post-translocation molecular chaperone; PpiC-type peptidyl-prolyl cis-trans isomerase 950725..951789 Rubrobacter xylanophilus DSM 9941 4116734 YP_643691.1 CDS Rxyl_0912 NC_008148.1 951908 953200 D PFAM: enolase; KEGG: ctc:CTC00382 phosphopyruvate hydratase; enolase 951908..953200 Rubrobacter xylanophilus DSM 9941 4116735 YP_643692.1 CDS Rxyl_0913 NC_008148.1 953197 954630 D PFAM: pyruvate kinase; KEGG: mta:Moth_1867 pyruvate kinase; pyruvate kinase 953197..954630 Rubrobacter xylanophilus DSM 9941 4116736 YP_643693.1 CDS Rxyl_0914 NC_008148.1 954644 954961 D PFAM: Septum formation initiator; KEGG: cjk:jk1482 hypothetical protein; septum formation initiator 954644..954961 Rubrobacter xylanophilus DSM 9941 4117106 YP_643694.1 CDS Rxyl_0915 NC_008148.1 954948 955385 D KEGG: tma:TM1078 hypothetical protein; hypothetical protein 954948..955385 Rubrobacter xylanophilus DSM 9941 4117107 YP_643695.1 CDS Rxyl_0916 NC_008148.1 955485 955775 R hypothetical protein complement(955485..955775) Rubrobacter xylanophilus DSM 9941 4117108 YP_643696.1 CDS Rxyl_0917 NC_008148.1 955976 956473 D PFAM: UspA; KEGG: mth:MTH993 hypothetical protein; hypothetical protein 955976..956473 Rubrobacter xylanophilus DSM 9941 4117109 YP_643697.1 CDS Rxyl_0918 NC_008148.1 956480 957007 D hypothetical protein 956480..957007 Rubrobacter xylanophilus DSM 9941 4117110 YP_643698.1 CDS Rxyl_0919 NC_008148.1 957109 958320 D TIGRFAM: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: sso:SSO2128 Pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase delta chain) (porD-like); 2-oxoacid:acceptor oxidoreductase subunit delta 957109..958320 Rubrobacter xylanophilus DSM 9941 4117111 YP_643699.1 CDS Rxyl_0920 NC_008148.1 958379 959593 D PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase-like; KEGG: sso:SSO2129 Pyruvate synthase alpha chain (Pyruvic-ferredoxin oxidoreductase alpha chain) (porA-like); pyruvate ferredoxin oxidoreductase subunit alpha 958379..959593 Rubrobacter xylanophilus DSM 9941 4117112 YP_643700.1 CDS Rxyl_0921 NC_008148.1 959618 960808 D PFAM: thiamine pyrophosphate enzyme-like TPP-binding; KEGG: sso:SSO2130 Pyruvate synthase beta chain (Pyruvic-ferredoxin oxidoreductase beta chain) (porB-like); pyruvate ferredoxin oxidoreductase subunit beta 959618..960808 Rubrobacter xylanophilus DSM 9941 4117113 YP_643701.1 CDS Rxyl_0922 NC_008148.1 960882 961391 R hypothetical protein complement(960882..961391) Rubrobacter xylanophilus DSM 9941 4117114 YP_643702.1 CDS Rxyl_0923 NC_008148.1 961617 962822 D PFAM: aminotransferase, class V; KEGG: bbr:BB4671 serine--glyoxylate aminotransferase; class V aminotransferase 961617..962822 Rubrobacter xylanophilus DSM 9941 4117115 YP_643703.1 CDS Rxyl_0924 NC_008148.1 962838 964313 D KEGG: hma:pNG7286 hypothetical protein; hypothetical protein 962838..964313 Rubrobacter xylanophilus DSM 9941 4117116 YP_643704.1 CDS Rxyl_0925 NC_008148.1 964330 964872 D hypothetical protein 964330..964872 Rubrobacter xylanophilus DSM 9941 4117117 YP_643705.1 CDS Rxyl_0926 NC_008148.1 964957 965658 D KEGG: rso:RSc0949 probable transmembrane protein; putative transmembrane protein 964957..965658 Rubrobacter xylanophilus DSM 9941 4117118 YP_643706.1 CDS Rxyl_0927 NC_008148.1 965655 966122 R PFAM: helix-turn-helix motif; KEGG: mta:Moth_1627 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(965655..966122) Rubrobacter xylanophilus DSM 9941 4117119 YP_643707.1 CDS Rxyl_0928 NC_008148.1 966124 966399 R hypothetical protein complement(966124..966399) Rubrobacter xylanophilus DSM 9941 4117120 YP_643708.1 CDS Rxyl_0929 NC_008148.1 966466 967164 R PFAM: regulatory protein GntR, HTH GntR-like; KEGG: dvu:DVU2785 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(966466..967164) Rubrobacter xylanophilus DSM 9941 4117121 YP_643709.1 CDS Rxyl_0930 NC_008148.1 967628 967930 D hypothetical protein 967628..967930 Rubrobacter xylanophilus DSM 9941 4117122 YP_643710.1 CDS Rxyl_0931 NC_008148.1 967882 968586 R PFAM: Phosphoglycerate mutase; KEGG: gvi:gll0992 hypothetical protein; hypothetical protein complement(967882..968586) Rubrobacter xylanophilus DSM 9941 4117123 YP_643711.1 CDS Rxyl_0932 NC_008148.1 968634 970259 D KEGG: gsu:GSU1489 hypothetical protein; hypothetical protein 968634..970259 Rubrobacter xylanophilus DSM 9941 4117124 YP_643712.1 CDS Rxyl_0933 NC_008148.1 970277 971386 D PFAM: Methionine synthase, vitamin-B12 independent Cobalamin-independent synthase MetE-like; KEGG: rpb:RPB_1584 methionine synthase, vitamin-B12 independent; methionine synthase (B12-independent) 970277..971386 Rubrobacter xylanophilus DSM 9941 4117125 YP_643713.1 CDS Rxyl_0934 NC_008148.1 971383 972444 R PFAM: Allergen V5/Tpx-1 related; KEGG: sma:SAV2660 hypothetical protein; allergen V5/Tpx-1-like protein complement(971383..972444) Rubrobacter xylanophilus DSM 9941 4116776 YP_643714.1 CDS Rxyl_0935 NC_008148.1 972581 974176 D KEGG: gsu:GSU1489 hypothetical protein; hypothetical protein 972581..974176 Rubrobacter xylanophilus DSM 9941 4116777 YP_643715.1 CDS Rxyl_0936 NC_008148.1 974173 975156 R PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: sma:SAV7139 putative oxidoreductase; zinc-binding alcohol dehydrogenase complement(974173..975156) Rubrobacter xylanophilus DSM 9941 4116778 YP_643716.1 CDS Rxyl_0937 NC_008148.1 975230 975928 D PFAM: CBS amino acid-binding ACT; KEGG: chy:CHY_0173 acetoin utilization protein AcuB; hypothetical protein 975230..975928 Rubrobacter xylanophilus DSM 9941 4116779 YP_643717.1 CDS Rxyl_0938 NC_008148.1 975925 976833 R PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: hma:rrnAC3259 UDP-glucose 4-epimerase; NAD-dependent epimerase/dehydratase complement(975925..976833) Rubrobacter xylanophilus DSM 9941 4116780 YP_643718.1 CDS Rxyl_0939 NC_008148.1 976858 977520 R KEGG: sco:SCO0633 hypothetical protein; putative transmembrane anti-sigma factor complement(976858..977520) Rubrobacter xylanophilus DSM 9941 4116781 YP_643719.1 CDS Rxyl_0940 NC_008148.1 977517 978104 R PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: sil:SPO1478 RNA polymerase sigma-70 factor, ECF family; ECF subfamily RNA polymerase sigma-24 factor complement(977517..978104) Rubrobacter xylanophilus DSM 9941 4116782 YP_643720.1 CDS Rxyl_0941 NC_008148.1 978211 979236 R PFAM: luciferase-like; KEGG: mbo:Mb1395 probable oxidoreductase; luciferase-like protein complement(978211..979236) Rubrobacter xylanophilus DSM 9941 4116783 YP_643721.1 CDS Rxyl_0942 NC_008148.1 979248 980222 R PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: tth:TTC1833 quinone oxidoreductase; zinc-binding alcohol dehydrogenase complement(979248..980222) Rubrobacter xylanophilus DSM 9941 4116784 YP_643722.1 CDS Rxyl_0943 NC_008148.1 980361 981767 D PFAM: protein kinase tyrosine protein kinase; SMART: Serine/threonine protein kinase; KEGG: mta:Moth_0912 serine/threonine protein kinase; serine/threonine protein kinase 980361..981767 Rubrobacter xylanophilus DSM 9941 4116785 YP_643723.1 CDS Rxyl_0944 NC_008148.1 981834 983417 D PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: rpa:RPA1609 benzoylformate decarboxylase; thiamine pyrophosphate enzyme-like TPP-binding protein 981834..983417 Rubrobacter xylanophilus DSM 9941 4116786 YP_643724.1 CDS Rxyl_0945 NC_008148.1 983441 984487 D PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: sma:SAV5320 putative LacI-family transcriptional regulator; LacI family transcriptional regulator 983441..984487 Rubrobacter xylanophilus DSM 9941 4116787 YP_643725.1 CDS Rxyl_0946 NC_008148.1 984484 985983 D PFAM: ABC transporter related; SMART: ATPase; KEGG: sma:SAV5319 putative D-ribose ABC transporter ATP-binding protein; ABC transporter-like protein 984484..985983 Rubrobacter xylanophilus DSM 9941 4116788 YP_643726.1 CDS Rxyl_0947 NC_008148.1 985976 986935 D PFAM: inner-membrane translocator; KEGG: sco:SCO2747 bifunctional carbohydrate binding and transport protein; inner-membrane translocator 985976..986935 Rubrobacter xylanophilus DSM 9941 4116789 YP_643727.1 CDS Rxyl_0948 NC_008148.1 986947 987882 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0206 Periplasmic sugar-binding proteins; periplasmic binding protein/LacI transcriptional regulator 986947..987882 Rubrobacter xylanophilus DSM 9941 4116790 YP_643728.1 CDS Rxyl_0949 NC_008148.1 987887 988792 D PFAM: PfkB; KEGG: sma:SAV5317 putative ribokinase; PfkB protein 987887..988792 Rubrobacter xylanophilus DSM 9941 4116791 YP_643729.1 CDS Rxyl_0950 NC_008148.1 988789 989178 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 988789..989178 Rubrobacter xylanophilus DSM 9941 4116792 YP_643730.1 CDS Rxyl_0951 NC_008148.1 989175 990422 R PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: par:Psyc_1255 possible TolB periplamsic protein; hypothetical protein complement(989175..990422) Rubrobacter xylanophilus DSM 9941 4116793 YP_643731.1 CDS Rxyl_0952 NC_008148.1 990511 991329 R PFAM: UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: cyb:CYB_0003 hypothetical protein; type 11 methyltransferase complement(990511..991329) Rubrobacter xylanophilus DSM 9941 4116794 YP_643732.1 CDS Rxyl_0953 NC_008148.1 991334 991972 R PFAM: flavin reductase-like, FMN-binding; KEGG: gka:GK3021 hypothetical protein; flavin reductase-like protein complement(991334..991972) Rubrobacter xylanophilus DSM 9941 4115916 YP_643733.1 CDS Rxyl_0954 NC_008148.1 992020 992676 R KEGG: pmt:PMT0660 esterase/lipase/thioesterase family active site; esterase/lipase/thioesterase family protein complement(992020..992676) Rubrobacter xylanophilus DSM 9941 4115917 YP_643734.1 CDS Rxyl_0955 NC_008148.1 992751 993368 R PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: sil:SPO2448 membrane protein, MarC family; multiple antibiotic resistance (MarC)-like protein complement(992751..993368) Rubrobacter xylanophilus DSM 9941 4115918 YP_643735.1 CDS Rxyl_0956 NC_008148.1 993369 995387 R PFAM: peptidase S9, prolyl oligopeptidase active site region; KEGG: ade:Adeh_0114 peptidase S9, prolyl oligopeptidase; peptidase S9, prolyl oligopeptidase active site region complement(993369..995387) Rubrobacter xylanophilus DSM 9941 4115919 YP_643736.1 CDS Rxyl_0957 NC_008148.1 995398 996162 R PFAM: biotin/lipoate A/B protein ligase; KEGG: hal:VNG2536C hypothetical protein; biotin/lipoate A/B protein ligase complement(995398..996162) Rubrobacter xylanophilus DSM 9941 4115920 YP_643737.1 CDS Rxyl_0958 NC_008148.1 996251 997186 D catalyzes the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP from actyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); 2-phospho-L-lactate transferase 996251..997186 Rubrobacter xylanophilus DSM 9941 4115921 YP_643738.1 CDS Rxyl_0959 NC_008148.1 997183 997800 D PFAM: protein of unknown function DUF121; KEGG: eba:p2A342 hypothetical protein; hypothetical protein 997183..997800 Rubrobacter xylanophilus DSM 9941 4115922 YP_643739.1 CDS Rxyl_0960 NC_008148.1 997856 998917 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 997856..998917 Rubrobacter xylanophilus DSM 9941 4115923 YP_643740.1 CDS Rxyl_0961 NC_008148.1 998931 999665 D TIGRFAM: Uncharacterised conserved protein UCP005026; PFAM: protein of unknown function DUF129; KEGG: mth:MTH1019 hypothetical protein; coenzyme F420-0 gamma-glutamyl ligase 998931..999665 Rubrobacter xylanophilus DSM 9941 4115924 YP_643741.1 CDS Rxyl_0962 NC_008148.1 999912 1000667 D PFAM: phosphoadenosine phosphosulfate reductase; KEGG: sth:STH1142 phosphoadenosine phosphosulfate reductase; phosphoadenylylsulfate reductase 999912..1000667 Rubrobacter xylanophilus DSM 9941 4115925 YP_643742.1 CDS Rxyl_0963 NC_008148.1 1000654 1002309 D PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like nitrite and sulphite reductase 4Fe-4S region; KEGG: nph:NP4004A probable ferredoxin--nitrite reductase 3; ferredoxin--nitrite reductase 1000654..1002309 Rubrobacter xylanophilus DSM 9941 4115926 YP_643743.1 CDS Rxyl_0964 NC_008148.1 1002312 1003514 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding coenzyme F420 hydrogenase/dehydrogenase beta subunit-like; KEGG: nph:NP4006A homolog to coenzyme F420 hydrogenase; coenzyme F420 hydrogenase/dehydrogenase subunit beta-like protein 1002312..1003514 Rubrobacter xylanophilus DSM 9941 4115927 YP_643744.1 CDS Rxyl_0965 NC_008148.1 1003516 1003851 D hypothetical protein 1003516..1003851 Rubrobacter xylanophilus DSM 9941 4115928 YP_643745.1 CDS sat NC_008148.1 1003848 1005029 D ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms; sulfate adenylyltransferase 1003848..1005029 Rubrobacter xylanophilus DSM 9941 4115929 YP_643746.1 CDS Rxyl_0967 NC_008148.1 1005120 1005689 D PFAM: adenylylsulfate kinase; KEGG: syn:slr0676 adenylylsulfate 3-phosphotransferase; adenylylsulfate kinase 1005120..1005689 Rubrobacter xylanophilus DSM 9941 4115930 YP_643747.1 CDS Rxyl_0968 NC_008148.1 1005686 1006495 D PFAM: protein of unknown function DUF81; KEGG: btk:BT9727_2185 conserved hypothetical protein, possible membrane protein; hypothetical protein 1005686..1006495 Rubrobacter xylanophilus DSM 9941 4115931 YP_643748.1 CDS Rxyl_0969 NC_008148.1 1006589 1007008 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sak:SAK_1508 lactoylglutathione lyase; glyoxalase/bleomycin resistance protein/dioxygenase 1006589..1007008 Rubrobacter xylanophilus DSM 9941 4115932 YP_643749.1 CDS Rxyl_0970 NC_008148.1 1007016 1007702 R TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: regulatory protein, MerR; excisionase/Xis, DNA-binding protein complement(1007016..1007702) Rubrobacter xylanophilus DSM 9941 4115933 YP_643750.1 CDS Rxyl_0971 NC_008148.1 1007988 1008602 D TIGRFAM: rare lipoprotein A; PFAM: Peptidoglycan-binding LysM Rare lipoprotein A; KEGG: tel:tlr0333 hypothetical protein; rare lipoprotein A 1007988..1008602 Rubrobacter xylanophilus DSM 9941 4115934 YP_643751.1 CDS Rxyl_0972 NC_008148.1 1008757 1009785 D PFAM: luciferase-like; KEGG: hma:rrnB0214 bacterial luciferase family monooxygenase; luciferase-like protein 1008757..1009785 Rubrobacter xylanophilus DSM 9941 4115935 YP_643752.1 CDS Rxyl_0973 NC_008148.1 1009800 1010846 D PFAM: nitroreductase pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: tfu:Tfu_2518 hypothetical protein; nitroreductase 1009800..1010846 Rubrobacter xylanophilus DSM 9941 4117205 YP_643753.1 CDS Rxyl_0974 NC_008148.1 1010848 1011294 R KEGG: tcr:509269.4 Tb-291 membrane-associated protein-like Pfam: Plasmodium_HRP PROSITE: ALA_RICH ARG_RICH GLU_RICH; hypothetical protein complement(1010848..1011294) Rubrobacter xylanophilus DSM 9941 4117206 YP_643754.1 CDS fbiC NC_008148.1 1011307 1013685 R 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase; catalyzes radical-mediated transfer of hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); functions in F420 biosynthesis; FO synthase complement(1011307..1013685) Rubrobacter xylanophilus DSM 9941 4117207 YP_643755.1 CDS Rxyl_0976 NC_008148.1 1013826 1014707 D PFAM: Rhodanese-like; KEGG: ttj:TTHA1028 thiosulfate sulfurtransferase; thiosulfate sulfurtransferase 1013826..1014707 Rubrobacter xylanophilus DSM 9941 4117208 YP_643756.1 CDS Rxyl_0977 NC_008148.1 1014714 1015118 D PFAM: nitrogen-fixing NifU-like-like; KEGG: nph:NP0940A homolog to nitrogen fixation protein NifU; nitrogen-fixing NifU-like protein 1014714..1015118 Rubrobacter xylanophilus DSM 9941 4117209 YP_643757.1 CDS Rxyl_0979 NC_008148.1 1017423 1018940 D TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: fra:Francci3_3168 argininosuccinate lyase; argininosuccinate lyase 1017423..1018940 Rubrobacter xylanophilus DSM 9941 4117210 YP_643758.1 CDS Rxyl_0980 NC_008148.1 1018948 1019763 D PFAM: metallophosphoesterase; KEGG: mac:MA4564 3,5-cyclic-nucleotide phosphodiesterase; metallophosphoesterase 1018948..1019763 Rubrobacter xylanophilus DSM 9941 4117211 YP_643759.1 CDS Rxyl_0981 NC_008148.1 1019760 1020119 R hypothetical protein complement(1019760..1020119) Rubrobacter xylanophilus DSM 9941 4117212 YP_643760.1 CDS Rxyl_0982 NC_008148.1 1020125 1021084 R PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: cyb:CYB_0579 quaternary amine uptake ABC transporter (QAT) family, periplasmic substrate-binding protein; glycine betaine ABC transporter substrate-binding protein complement(1020125..1021084) Rubrobacter xylanophilus DSM 9941 4117213 YP_643761.1 CDS Rxyl_0983 NC_008148.1 1021115 1021768 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cya:CYA_2571 quaternary amine ABC transporter (QAT) family, permease protein; binding-protein-dependent transport system inner membrane protein complement(1021115..1021768) Rubrobacter xylanophilus DSM 9941 4117214 YP_643762.1 CDS Rxyl_0984 NC_008148.1 1021768 1022478 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ava:Ava_2960 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1021768..1022478) Rubrobacter xylanophilus DSM 9941 4117215 YP_643763.1 CDS Rxyl_0985 NC_008148.1 1022482 1023447 R PFAM: ABC transporter related; SMART: ATPase; KEGG: sco:SCO2931 putative ABC transporter ATP-binding protein; ABC transporter-like protein complement(1022482..1023447) Rubrobacter xylanophilus DSM 9941 4117216 YP_643764.1 CDS Rxyl_0986 NC_008148.1 1023593 1023868 R hypothetical protein complement(1023593..1023868) Rubrobacter xylanophilus DSM 9941 4117217 YP_643765.1 CDS Rxyl_0987 NC_008148.1 1023868 1024197 R hypothetical protein complement(1023868..1024197) Rubrobacter xylanophilus DSM 9941 4117218 YP_643766.1 CDS Rxyl_0988 NC_008148.1 1024231 1024620 R hypothetical protein complement(1024231..1024620) Rubrobacter xylanophilus DSM 9941 4117219 YP_643767.1 CDS Rxyl_0989 NC_008148.1 1025020 1025781 D SMART: ParB-like nuclease; KEGG: sao:SAOUHSC_00083 hypothetical protein; ParB-like nuclease 1025020..1025781 Rubrobacter xylanophilus DSM 9941 4117220 YP_643768.1 CDS Rxyl_0990 NC_008148.1 1025886 1027175 D PFAM: adenylosuccinate synthetase; KEGG: tfu:Tfu_3012 adenylosuccinate synthetase; adenylosuccinate synthetase 1025886..1027175 Rubrobacter xylanophilus DSM 9941 4117221 YP_643769.1 CDS Rxyl_0991 NC_008148.1 1027179 1028456 D KEGG: mta:Moth_2043 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase protein of unknown function DUF201; phosphoribosylamine--glycine ligase 1027179..1028456 Rubrobacter xylanophilus DSM 9941 4117222 YP_643770.1 CDS Rxyl_0992 NC_008148.1 1028479 1029786 D TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: chy:CHY_1070 adenylosuccinate lyase; adenylosuccinate lyase 1028479..1029786 Rubrobacter xylanophilus DSM 9941 4117223 YP_643771.1 CDS Rxyl_0993 NC_008148.1 1029789 1030502 D KEGG: dra:DR0226 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1029789..1030502 Rubrobacter xylanophilus DSM 9941 4116211 YP_643772.1 CDS Rxyl_0994 NC_008148.1 1030499 1030723 D PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: zmo:ZMO1531 phosphoribosylformylglycinamidine synthase small subunit; phosphoribosylformylglycinamidine synthetase PurS 1030499..1030723 Rubrobacter xylanophilus DSM 9941 4116212 YP_643773.1 CDS Rxyl_0995 NC_008148.1 1030720 1031382 D TIGRFAM: phosphoribosylformylglycinamidine synthase I; PFAM: SNO glutamine amidotransferase CobB/CobQ-like glutamine amidotransferase; KEGG: tfu:Tfu_0156 phosphoribosylformylglycinamidine synthase I; phosphoribosylformylglycinamidine synthase subunit I 1030720..1031382 Rubrobacter xylanophilus DSM 9941 4116213 YP_643774.1 CDS Rxyl_0996 NC_008148.1 1031379 1033562 D KEGG: mta:Moth_2048 phosphoribosylformylglycinamidine synthase II; TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein AIR synthase related protein-like; phosphoribosylformylglycinamidine synthase subunit II 1031379..1033562 Rubrobacter xylanophilus DSM 9941 4116214 YP_643775.1 CDS Rxyl_0997 NC_008148.1 1033564 1035012 D TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase, class-II phosphoribosyltransferase; KEGG: syf:Synpcc7942_0004 amidophosphoribosyltransferase; amidophosphoribosyltransferase 1033564..1035012 Rubrobacter xylanophilus DSM 9941 4116215 YP_643776.1 CDS Rxyl_0998 NC_008148.1 1035016 1036041 D KEGG: gvi:gll0720 phosphoribosyl formylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein AIR synthase related protein-like; phosphoribosylformylglycinamidine cyclo-ligase 1035016..1036041 Rubrobacter xylanophilus DSM 9941 4116216 YP_643777.1 CDS Rxyl_0999 NC_008148.1 1036031 1036615 D TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase-like; KEGG: sth:STH2852 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 1036031..1036615 Rubrobacter xylanophilus DSM 9941 4116217 YP_643778.1 CDS Rxyl_1000 NC_008148.1 1036612 1038135 D KEGG: tfu:Tfu_2572 AICARFT/IMPCHase bienzyme; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme MGS-like; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1036612..1038135 Rubrobacter xylanophilus DSM 9941 4116218 YP_643779.1 CDS Rxyl_1001 NC_008148.1 1038146 1038595 D KEGG: ade:Adeh_3903 hypothetical protein; hypothetical protein 1038146..1038595 Rubrobacter xylanophilus DSM 9941 4116219 YP_643780.1 CDS Rxyl_1002 NC_008148.1 1038943 1039596 R hypothetical protein complement(1038943..1039596) Rubrobacter xylanophilus DSM 9941 4116220 YP_643781.1 CDS Rxyl_1003 NC_008148.1 1040186 1040518 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: tte:TTE1233 Thiol-disulfide isomerase and thioredoxins; thioredoxin 1040186..1040518 Rubrobacter xylanophilus DSM 9941 4116221 YP_643782.1 CDS Rxyl_1004 NC_008148.1 1040661 1041029 R hypothetical protein complement(1040661..1041029) Rubrobacter xylanophilus DSM 9941 4116222 YP_643783.1 CDS Rxyl_1005 NC_008148.1 1041118 1043139 R KEGG: tfu:Tfu_1426 hypothetical protein; hypothetical protein complement(1041118..1043139) Rubrobacter xylanophilus DSM 9941 4116223 YP_643784.1 CDS Rxyl_1006 NC_008148.1 1043603 1043911 D hypothetical protein 1043603..1043911 Rubrobacter xylanophilus DSM 9941 4116224 YP_643785.1 CDS Rxyl_1007 NC_008148.1 1043912 1044280 D hypothetical protein 1043912..1044280 Rubrobacter xylanophilus DSM 9941 4116225 YP_643786.1 CDS Rxyl_1008 NC_008148.1 1044367 1045236 R PFAM: sigma-70 region 3 sigma-70 region 2 sigma-70 region 4; KEGG: bha:BH1376 RNA polymerase major sigma factor; RNA polymerase sigma-28 subunit complement(1044367..1045236) Rubrobacter xylanophilus DSM 9941 4116226 YP_643787.1 CDS Rxyl_1009 NC_008148.1 1045434 1045946 R PFAM: helix-turn-helix motif; XRE family transcriptional regulator complement(1045434..1045946) Rubrobacter xylanophilus DSM 9941 4116227 YP_643788.1 CDS Rxyl_1010 NC_008148.1 1046089 1046550 D PFAM: heat shock protein Hsp20; KEGG: dps:DP1866 similar to low molecular weight heat shock protein (HSP17); heat shock protein Hsp20 1046089..1046550 Rubrobacter xylanophilus DSM 9941 4116228 YP_643789.1 CDS Rxyl_1011 NC_008148.1 1046664 1047560 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: bsu:BG14088 similar to hypothetical proteins; hypothetical protein 1046664..1047560 Rubrobacter xylanophilus DSM 9941 4116229 YP_643790.1 CDS Rxyl_1012 NC_008148.1 1047557 1047928 R hypothetical protein complement(1047557..1047928) Rubrobacter xylanophilus DSM 9941 4116230 YP_643791.1 CDS Rxyl_1013 NC_008148.1 1048013 1048663 D PFAM: CBS amino acid-binding ACT; KEGG: ttj:TTHA0474 acetoin utilization protein AcuB (acetoin dehydrogenase); hypothetical protein 1048013..1048663 Rubrobacter xylanophilus DSM 9941 4116699 YP_643792.1 CDS Rxyl_1014 NC_008148.1 1048660 1049823 D PFAM: histone deacetylase superfamily; KEGG: gka:GK2809 acetoin utilization protein; histone deacetylase superfamily protein 1048660..1049823 Rubrobacter xylanophilus DSM 9941 4116700 YP_643793.1 CDS Rxyl_1015 NC_008148.1 1049859 1050182 D PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: ava:Ava_1275 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS 1049859..1050182 Rubrobacter xylanophilus DSM 9941 4116701 YP_643794.1 CDS Rxyl_1016 NC_008148.1 1050247 1051428 D PFAM: protein of unknown function DUF894, DitE major facilitator superfamily MFS_1; KEGG: sma:SAV6301 putative antibiotic transport protein; major facilitator transporter 1050247..1051428 Rubrobacter xylanophilus DSM 9941 4116702 YP_643795.1 CDS Rxyl_1017 NC_008148.1 1051450 1052799 D PFAM: metal-dependent phosphohydrolase, HD subdomain; KEGG: sma:SAV3036 hypothetical protein; metal dependent phosphohydrolase 1051450..1052799 Rubrobacter xylanophilus DSM 9941 4116703 YP_643796.1 CDS Rxyl_1018 NC_008148.1 1052874 1054832 D KEGG: deh:cbdb_A1335 GGDEF domain; TIGRFAM: uncharacterized domain HDIG; PFAM: GGDEF metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 1052874..1054832 Rubrobacter xylanophilus DSM 9941 4116704 YP_643797.1 CDS Rxyl_1019 NC_008148.1 1054837 1055823 R KEGG: ttj:TTHA0011 molybdenum cofactor biosynthesis protein A (MoaA); TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM molybdenum cofactor synthesis-like; SMART: Elongator protein 3/MiaB/NifB; GTP cyclohydrolase subunit MoaA complement(1054837..1055823) Rubrobacter xylanophilus DSM 9941 4116705 YP_643798.1 CDS Rxyl_1020 NC_008148.1 1055891 1057159 R PFAM: Arsenical pump membrane protein Citrate transporter; KEGG: chy:CHY_2019 arsenic transporter family protein; citrate transporter complement(1055891..1057159) Rubrobacter xylanophilus DSM 9941 4116706 YP_643799.1 CDS Rxyl_1021 NC_008148.1 1057199 1057678 R PFAM: CBS; KEGG: tel:tll1802 CBS domain protein; hypothetical protein complement(1057199..1057678) Rubrobacter xylanophilus DSM 9941 4116707 YP_643800.1 CDS Rxyl_1022 NC_008148.1 1057790 1059055 D PFAM: Arsenical pump membrane protein sodium/sulphate symporter Citrate transporter; KEGG: chy:CHY_2019 arsenic transporter family protein; citrate transporter 1057790..1059055 Rubrobacter xylanophilus DSM 9941 4116708 YP_643801.1 CDS Rxyl_1023 NC_008148.1 1059052 1060605 R PFAM: glycosyl transferase, group 1; KEGG: dps:DP0309 similar to hexosyltransferase; group 1 glycosyl transferase complement(1059052..1060605) Rubrobacter xylanophilus DSM 9941 4116709 YP_643802.1 CDS Rxyl_1024 NC_008148.1 1060782 1061639 D KEGG: lma:LmjF34.0690 hypothetical protein, conserved; hypothetical protein 1060782..1061639 Rubrobacter xylanophilus DSM 9941 4116710 YP_643803.1 CDS Rxyl_1025 NC_008148.1 1061636 1061818 R PFAM: sec-independent translocation protein mttA/Hcf106; sec-independent translocation protein mttA/Hcf106 complement(1061636..1061818) Rubrobacter xylanophilus DSM 9941 4116711 YP_643804.1 CDS Rxyl_1026 NC_008148.1 1061815 1062255 R KEGG: eba:ebA2139 hypothetical protein; hypothetical protein complement(1061815..1062255) Rubrobacter xylanophilus DSM 9941 4116712 YP_643805.1 CDS Rxyl_1027 NC_008148.1 1062252 1062620 R PFAM: protein of unknown function DUF1025; KEGG: sma:SAV4125 hypothetical protein; hypothetical protein complement(1062252..1062620) Rubrobacter xylanophilus DSM 9941 4116713 YP_643806.1 CDS Rxyl_1028 NC_008148.1 1062650 1063342 R PFAM: regulatory protein GntR, HTH GntR-like; KEGG: chy:CHY_0189 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(1062650..1063342) Rubrobacter xylanophilus DSM 9941 4116714 YP_643807.1 CDS Rxyl_1029 NC_008148.1 1063456 1064343 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: nar:Saro_2598 5-carboxymethyl-2-hydroxymuconate delta-isomerase; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 1063456..1064343 Rubrobacter xylanophilus DSM 9941 4116715 YP_643808.1 CDS Rxyl_1030 NC_008148.1 1064382 1065056 D PFAM: glutamine amidotransferase class-I; KEGG: pae:PA1729 hypothetical protein; glutamine amidotransferase 1064382..1065056 Rubrobacter xylanophilus DSM 9941 4116716 YP_643809.1 CDS Rxyl_1031 NC_008148.1 1065053 1066387 D PFAM: glutamine synthetase, catalytic region; KEGG: mta:Moth_1764 glutamine synthetase, type I; L-glutamine synthetase 1065053..1066387 Rubrobacter xylanophilus DSM 9941 4116717 YP_643810.1 CDS Rxyl_1032 NC_008148.1 1066401 1067645 D PFAM: cytochrome P450; KEGG: mpa:MAP3818 hypothetical protein; cytochrome P450 1066401..1067645 Rubrobacter xylanophilus DSM 9941 4116679 YP_643811.1 CDS Rxyl_1033 NC_008148.1 1067642 1068565 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rpa:RPA3761 putative catechol 2,3-dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1067642..1068565 Rubrobacter xylanophilus DSM 9941 4116680 YP_643812.1 CDS Rxyl_1034 NC_008148.1 1068562 1069362 D PFAM: Acetoacetate decarboxylase; KEGG: gsu:GSU2400 hypothetical protein; acetoacetate decarboxylase 1068562..1069362 Rubrobacter xylanophilus DSM 9941 4116681 YP_643813.1 CDS Rxyl_1035 NC_008148.1 1069359 1070825 D PFAM: aldehyde dehydrogenase; KEGG: nar:Saro_2610 betaine-aldehyde dehydrogenase; betaine-aldehyde dehydrogenase 1069359..1070825 Rubrobacter xylanophilus DSM 9941 4116682 YP_643814.1 CDS Rxyl_1036 NC_008148.1 1070822 1072102 D TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20 peptidase dimerisation; KEGG: mlo:mlr7167 acetylornitine deacetylase; acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase 1070822..1072102 Rubrobacter xylanophilus DSM 9941 4116683 YP_643815.1 CDS Rxyl_1037 NC_008148.1 1072102 1073631 D PFAM: amino acid permease-associated region; KEGG: sco:SCO1683 amino acid permease; amino acid permease-associated protein 1072102..1073631 Rubrobacter xylanophilus DSM 9941 4116684 YP_643816.1 CDS Rxyl_1038 NC_008148.1 1073628 1075079 D PFAM: aminotransferase, class V aromatic amino acid beta-eliminating lyase/threonine aldolase Pyridoxal-dependent decarboxylase; KEGG: dde:Dde_1124 aromatic amino acid decarboxylase, putative; aromatic-L-amino-acid decarboxylase 1073628..1075079 Rubrobacter xylanophilus DSM 9941 4116685 YP_643817.1 CDS Rxyl_1039 NC_008148.1 1075132 1075380 D hypothetical protein 1075132..1075380 Rubrobacter xylanophilus DSM 9941 4116686 YP_643818.1 CDS Rxyl_1040 NC_008148.1 1075412 1076701 D PFAM: AAA ATPase, central region ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: gsu:GSU2067 ATPase, AAA family; recombination factor protein RarA 1075412..1076701 Rubrobacter xylanophilus DSM 9941 4116687 YP_643819.1 CDS Rxyl_1041 NC_008148.1 1076698 1077300 R PFAM: GCN5-related N-acetyltransferase; KEGG: fra:Francci3_2105 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1076698..1077300) Rubrobacter xylanophilus DSM 9941 4116688 YP_643820.1 CDS Rxyl_1042 NC_008148.1 1077281 1079140 R hypothetical protein complement(1077281..1079140) Rubrobacter xylanophilus DSM 9941 4116689 YP_643821.1 CDS Rxyl_1043 NC_008148.1 1079137 1080294 R KEGG: sma:SAV6066 putative membrane protein; hypothetical protein complement(1079137..1080294) Rubrobacter xylanophilus DSM 9941 4116690 YP_643822.1 CDS Rxyl_1044 NC_008148.1 1080381 1081580 R PFAM: TrkA-C PhoU; KEGG: mac:MA1435 potassium channel protein; hypothetical protein complement(1080381..1081580) Rubrobacter xylanophilus DSM 9941 4116691 YP_643823.1 CDS Rxyl_1045 NC_008148.1 1081591 1082865 R PFAM: MgtE integral membrane region; KEGG: mth:MTH1401 mgtE-like transporter; MgtE integral membrane protein complement(1081591..1082865) Rubrobacter xylanophilus DSM 9941 4116692 YP_643824.1 CDS Rxyl_1046 NC_008148.1 1082980 1083333 D hypothetical protein 1082980..1083333 Rubrobacter xylanophilus DSM 9941 4116693 YP_643825.1 CDS Rxyl_1047 NC_008148.1 1083344 1084597 D PFAM: Arsenical pump membrane protein Citrate transporter; KEGG: sma:SAV7477 putative membrane efflux protein; arsenical pump membrane protein 1083344..1084597 Rubrobacter xylanophilus DSM 9941 4116694 YP_643826.1 CDS Rxyl_1048 NC_008148.1 1084594 1085130 R PFAM: DoxX; KEGG: sma:SAV5909 hypothetical protein; DoxX protein complement(1084594..1085130) Rubrobacter xylanophilus DSM 9941 4116695 YP_643827.1 CDS Rxyl_1049 NC_008148.1 1085191 1085883 R PFAM: regulatory protein, TetR; KEGG: nfa:nfa44760 putative transcriptional regulator; TetR family transcriptional regulator complement(1085191..1085883) Rubrobacter xylanophilus DSM 9941 4116696 YP_643828.1 CDS Rxyl_1050 NC_008148.1 1085983 1086591 D PFAM: NADPH-dependent FMN reductase flavodoxin/nitric oxide synthase; KEGG: oih:OB3102 trp repressor binding protein; flavodoxin/nitric oxide synthase 1085983..1086591 Rubrobacter xylanophilus DSM 9941 4116697 YP_643829.1 CDS Rxyl_1051 NC_008148.1 1086625 1087647 D PFAM: iron-containing alcohol dehydrogenase; KEGG: nar:Saro_2455 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 1086625..1087647 Rubrobacter xylanophilus DSM 9941 4116698 YP_643830.1 CDS Rxyl_1052 NC_008148.1 1087657 1088952 D PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: tth:TTC1744 lactate 2-monooxygenase; lactate 2-monooxygenase 1087657..1088952 Rubrobacter xylanophilus DSM 9941 4116932 YP_643831.1 CDS Rxyl_1053 NC_008148.1 1088924 1089517 R PFAM: protein of unknown function DUF147; KEGG: mja:MJ1002 hypothetical protein; hypothetical protein complement(1088924..1089517) Rubrobacter xylanophilus DSM 9941 4116933 YP_643832.1 CDS Rxyl_1054 NC_008148.1 1089591 1090244 R PFAM: phospholipase/Carboxylesterase; KEGG: bja:bll3246 hypothetical protein; phospholipase/carboxylesterase complement(1089591..1090244) Rubrobacter xylanophilus DSM 9941 4116934 YP_643833.1 CDS Rxyl_1055 NC_008148.1 1090241 1091164 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:bll3247 dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(1090241..1091164) Rubrobacter xylanophilus DSM 9941 4116935 YP_643834.1 CDS Rxyl_1056 NC_008148.1 1091191 1091598 R PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: tfu:Tfu_2318 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like protein complement(1091191..1091598) Rubrobacter xylanophilus DSM 9941 4116936 YP_643835.1 CDS Rxyl_1057 NC_008148.1 1091652 1092632 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll3759 similar to ABC transporter (binding protein); glyoxalase/bleomycin resistance protein/dioxygenase complement(1091652..1092632) Rubrobacter xylanophilus DSM 9941 4116937 YP_643836.1 CDS Rxyl_1058 NC_008148.1 1092686 1094101 R PFAM: major facilitator superfamily MFS_1; KEGG: btk:BT9727_0958 major facilitator family transporter; possible metal-tetracycline/H+ antiporter; major facilitator transporter complement(1092686..1094101) Rubrobacter xylanophilus DSM 9941 4116938 YP_643837.1 CDS Rxyl_1059 NC_008148.1 1094098 1094559 R PFAM: regulatory protein, MarR iron dependent repressor transcriptional regulator TrmB; KEGG: mlo:mlr5157 hypothetical protein; transcriptional regulator, TrmB complement(1094098..1094559) Rubrobacter xylanophilus DSM 9941 4116939 YP_643838.1 CDS Rxyl_1060 NC_008148.1 1094633 1095769 R TIGRFAM: GGDEF domain; PFAM: GGDEF; KEGG: sth:STH566 putative sensory box/GGDEF domain protein; diguanylate cyclase complement(1094633..1095769) Rubrobacter xylanophilus DSM 9941 4116940 YP_643839.1 CDS Rxyl_1061 NC_008148.1 1095856 1096731 R TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein-like; KEGG: mta:Moth_1625 selenide, water dikinase; selenophosphate synthase complement(1095856..1096731) Rubrobacter xylanophilus DSM 9941 4116941 YP_643840.1 CDS Rxyl_1062 NC_008148.1 1096946 1097557 D KEGG: tma:TM1431 glycerol uptake operon antiterminator; glycerol uptake operon antiterminator 1096946..1097557 Rubrobacter xylanophilus DSM 9941 4116942 YP_643841.1 CDS Rxyl_1063 NC_008148.1 1097762 1099273 D TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: noc:Noc_2698 glycerol kinase; glycerol kinase 1097762..1099273 Rubrobacter xylanophilus DSM 9941 4116943 YP_643842.1 CDS Rxyl_1064 NC_008148.1 1099270 1100268 D KEGG: tte:TTE1997 dihydroxyacetone kinase; TIGRFAM: Dihydroxyacetone kinase DhaK, subunit 1; PFAM: Dak kinase; dihydroxyacetone kinase DhaK subunit 1 1099270..1100268 Rubrobacter xylanophilus DSM 9941 4116944 YP_643843.1 CDS Rxyl_1065 NC_008148.1 1100294 1101037 D TIGRFAM: MIP family channel proteins; PFAM: major intrinsic protein; KEGG: chy:CHY_1840 glycerol uptake facilitator protein; MIP family channel protein 1100294..1101037 Rubrobacter xylanophilus DSM 9941 4116945 YP_643844.1 CDS Rxyl_1066 NC_008148.1 1101109 1101327 D hypothetical protein 1101109..1101327 Rubrobacter xylanophilus DSM 9941 4116946 YP_643845.1 CDS Rxyl_1067 NC_008148.1 1101349 1101975 D TIGRFAM: Dihydroxyacetone kinase, subunit L; PFAM: Dak phosphatase; KEGG: lxx:Lxx09880 dihydroxyacetone kinase; dihydroxyacetone kinase subunit L 1101349..1101975 Rubrobacter xylanophilus DSM 9941 4116947 YP_643846.1 CDS Rxyl_1068 NC_008148.1 1101977 1102372 D TIGRFAM: Dihydroxyacetone kinase, subunit phosphotransferase; PFAM: PTS system fructose subfamily IIA component; KEGG: tte:TTE1995 hypothetical protein; dihydroxyacetone kinase subunit phosphotransferase 1101977..1102372 Rubrobacter xylanophilus DSM 9941 4116948 YP_643847.1 CDS Rxyl_1069 NC_008148.1 1102485 1104155 D PFAM: FAD dependent oxidoreductase; KEGG: syn:sll1085 glycerol-3-phosphate dehydrogenase; FAD dependent oxidoreductase 1102485..1104155 Rubrobacter xylanophilus DSM 9941 4116949 YP_643848.1 CDS Rxyl_1070 NC_008148.1 1104266 1104784 D PFAM: Rubrerythrin Ferritin and Dps; KEGG: mmp:MMP1172 hypothetical protein; rubrerythrin 1104266..1104784 Rubrobacter xylanophilus DSM 9941 4116950 YP_643849.1 CDS Rxyl_1071 NC_008148.1 1104890 1105804 D KEGG: fra:Francci3_0059 conserved hypothetical protein; hypothetical protein 1104890..1105804 Rubrobacter xylanophilus DSM 9941 4116659 YP_643850.1 CDS Rxyl_1072 NC_008148.1 1105903 1107231 D PFAM: CBS protein of unknown function DUF21 transporter-associated region; KEGG: gka:GK0564 hemolysin; hypothetical protein 1105903..1107231 Rubrobacter xylanophilus DSM 9941 4116660 YP_643851.1 CDS Rxyl_1073 NC_008148.1 1107265 1108092 D PFAM: TatD-related deoxyribonuclease amidohydrolase 2; KEGG: mka:MK0426 hypothetical protein; amidohydrolase 2 1107265..1108092 Rubrobacter xylanophilus DSM 9941 4116661 YP_643852.1 CDS Rxyl_1074 NC_008148.1 1108080 1108415 D hypothetical protein 1108080..1108415 Rubrobacter xylanophilus DSM 9941 4116662 YP_643853.1 CDS Rxyl_1075 NC_008148.1 1108412 1109407 D PFAM: L-asparaginase II; KEGG: mlo:mlr7616 hypothetical protein; L-asparaginase II 1108412..1109407 Rubrobacter xylanophilus DSM 9941 4116663 YP_643854.1 CDS aat NC_008148.1 1109419 1109994 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 1109419..1109994 Rubrobacter xylanophilus DSM 9941 4116664 YP_643855.1 CDS Rxyl_1077 NC_008148.1 1110176 1111075 D PFAM: protein of unknown function DUF75; KEGG: sco:SCO1662 hypothetical protein; hypothetical protein 1110176..1111075 Rubrobacter xylanophilus DSM 9941 4116665 YP_643856.1 CDS Rxyl_1078 NC_008148.1 1111095 1111634 R PFAM: protein of unknown function DUF456; KEGG: pca:Pcar_2062 hypothetical protein; hypothetical protein complement(1111095..1111634) Rubrobacter xylanophilus DSM 9941 4116666 YP_643857.1 CDS Rxyl_1079 NC_008148.1 1111642 1112481 R TIGRFAM: conserved hypothetical protein; PFAM: thiamine biosynthesis protein ExsB PP-loop; KEGG: chy:CHY_1281 conserved hypothetical protein TIGR00268; hypothetical protein complement(1111642..1112481) Rubrobacter xylanophilus DSM 9941 4116667 YP_643858.1 CDS Rxyl_1080 NC_008148.1 1112478 1113062 R PFAM: Redoxin; KEGG: pfl:PFL_4258 BcpB; redoxin complement(1112478..1113062) Rubrobacter xylanophilus DSM 9941 4116668 YP_643859.1 CDS Rxyl_1081 NC_008148.1 1113064 1114305 R PFAM: beta-ketoacyl synthase; KEGG: cya:CYA_2873 3-oxoacyl-[acyl-carrier-protein] synthase II; 3-oxoacyl-ACP synthase complement(1113064..1114305) Rubrobacter xylanophilus DSM 9941 4116669 YP_643860.1 CDS Rxyl_1082 NC_008148.1 1114448 1114762 D hypothetical protein 1114448..1114762 Rubrobacter xylanophilus DSM 9941 4116670 YP_643861.1 CDS Rxyl_1083 NC_008148.1 1114775 1115584 D PFAM: nitroreductase; KEGG: dra:DR1271 hypothetical protein; cob(II)yrinic acid a,c-diamide reductase 1114775..1115584 Rubrobacter xylanophilus DSM 9941 4116671 YP_643862.1 CDS Rxyl_1084 NC_008148.1 1115581 1116624 D PFAM: chalcone and stilbene synthases-like Chalcone and stilbene synthases-like FAE1/Type III polyketide synthase-like protein 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; KEGG: dra:DR2091 chalcone synthase, putative; chalcone and stilbene synthases-like protein 1115581..1116624 Rubrobacter xylanophilus DSM 9941 4116672 YP_643863.1 CDS Rxyl_1085 NC_008148.1 1116618 1117136 D PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: sco:SCO7670 hypothetical protein; isoprenylcysteine carboxyl methyltransferase 1116618..1117136 Rubrobacter xylanophilus DSM 9941 4116673 YP_643864.1 CDS Rxyl_1086 NC_008148.1 1117182 1118456 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1117182..1118456 Rubrobacter xylanophilus DSM 9941 4116674 YP_643865.1 CDS Rxyl_1087 NC_008148.1 1118527 1119957 D KEGG: plt:Plut_1492 prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S) Anticodon-binding; prolyl-tRNA synthetase 1118527..1119957 Rubrobacter xylanophilus DSM 9941 4116675 YP_643866.1 CDS Rxyl_1088 NC_008148.1 1120079 1121011 D KEGG: sco:SCO0445 secreted protein; hypothetical protein 1120079..1121011 Rubrobacter xylanophilus DSM 9941 4116676 YP_643867.1 CDS Rxyl_1089 NC_008148.1 1121277 1122419 D KEGG: sth:STH1685 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; homoserine O-acetyltransferase 1121277..1122419 Rubrobacter xylanophilus DSM 9941 4116677 YP_643868.1 CDS Rxyl_1090 NC_008148.1 1122518 1123795 D KEGG: mka:MK0109 aspartokinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; aspartate kinase 1122518..1123795 Rubrobacter xylanophilus DSM 9941 4116678 YP_643869.1 CDS Rxyl_1091 NC_008148.1 1123792 1124874 D PFAM: homoserine dehydrogenase homoserine dehydrogenase, NAD-binding; KEGG: xac:XAC1820 homoserine dehydrogenase / aspartate kinase; homoserine dehydrogenase 1123792..1124874 Rubrobacter xylanophilus DSM 9941 4116112 YP_643870.1 CDS Rxyl_1092 NC_008148.1 1124868 1125851 D TIGRFAM: Aspartate-semialdehyde dehydrogenase, USG-1 related; PFAM: Semialdehyde dehydrogenase, NAD - binding Semialdehyde dehydrogenase, dimerisation region; KEGG: bce:BC3799 aspartate-semialdehyde dehydrogenase; aspartate semialdehyde dehydrogenase 1124868..1125851 Rubrobacter xylanophilus DSM 9941 4116113 YP_643871.1 CDS Rxyl_1093 NC_008148.1 1125957 1126244 D hypothetical protein 1125957..1126244 Rubrobacter xylanophilus DSM 9941 4116114 YP_643872.1 CDS Rxyl_1094 NC_008148.1 1126324 1126593 D TIGRFAM: Putative regulatory protein, FmdB; KEGG: ade:Adeh_0196 hypothetical protein; FmdB transcriptional regulator 1126324..1126593 Rubrobacter xylanophilus DSM 9941 4116115 YP_643873.1 CDS Rxyl_1095 NC_008148.1 1126600 1126872 D hypothetical protein 1126600..1126872 Rubrobacter xylanophilus DSM 9941 4116116 YP_643874.1 CDS Rxyl_1096 NC_008148.1 1127060 1130557 D KEGG: mta:Moth_1872 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP-like nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: Phosphoesterase PHP-like; DNA polymerase III catalytic subunit, DnaE type 1127060..1130557 Rubrobacter xylanophilus DSM 9941 4116117 YP_643875.1 CDS Rxyl_1097 NC_008148.1 1130647 1131987 D PFAM: amino acid permease-associated region; KEGG: psp:PSPPH_2512 amino acid transporter; amino acid permease-associated protein 1130647..1131987 Rubrobacter xylanophilus DSM 9941 4116118 YP_643876.1 CDS Rxyl_1098 NC_008148.1 1131984 1133513 R PFAM: peptidase M32, carboxypeptidase Taq metallopeptidase; KEGG: sru:SRU_2485 carboxypeptidase; carboxypeptidase complement(1131984..1133513) Rubrobacter xylanophilus DSM 9941 4116119 YP_643877.1 CDS Rxyl_1099 NC_008148.1 1133622 1134914 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvu:DVU1165 pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1133622..1134914 Rubrobacter xylanophilus DSM 9941 4116120 YP_643878.1 CDS Rxyl_1100 NC_008148.1 1134947 1136188 D PFAM: tRNA synthetase, class II (G, H, P and S); KEGG: mta:Moth_2037 histidine--tRNA ligase; ATP phosphoribosyltransferase regulatory subunit 1134947..1136188 Rubrobacter xylanophilus DSM 9941 4116121 YP_643879.1 CDS Rxyl_1101 NC_008148.1 1136185 1136835 D PFAM: ATP phosphoribosyltransferase; KEGG: mta:Moth_2036 ATP phosphoribosyltransferase; ATP phosphoribosyltransferase 1136185..1136835 Rubrobacter xylanophilus DSM 9941 4116122 YP_643880.1 CDS Rxyl_1102 NC_008148.1 1136825 1138081 D PFAM: histidinol dehydrogenase; KEGG: syw:SYNW0610 histidinol dehydrogenase; histidinol dehydrogenase 1136825..1138081 Rubrobacter xylanophilus DSM 9941 4116123 YP_643881.1 CDS Rxyl_1103 NC_008148.1 1138081 1138665 D PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: gox:GOX0479 imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 1138081..1138665 Rubrobacter xylanophilus DSM 9941 4116124 YP_643882.1 CDS Rxyl_1104 NC_008148.1 1138662 1139279 D TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I CobB/CobQ-like glutamine amidotransferase; KEGG: cvi:CV0616 amidotransferase HisH; imidazole glycerol phosphate synthase subunit hisH 1138662..1139279 Rubrobacter xylanophilus DSM 9941 4116125 YP_643883.1 CDS Rxyl_1105 NC_008148.1 1139266 1139997 D TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis; KEGG: mta:Moth_2032 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1139266..1139997 Rubrobacter xylanophilus DSM 9941 4116126 YP_643884.1 CDS Rxyl_1106 NC_008148.1 1140032 1140544 D KEGG: gvi:gll2473 hypothetical protein; hypothetical protein 1140032..1140544 Rubrobacter xylanophilus DSM 9941 4116127 YP_643885.1 CDS Rxyl_1107 NC_008148.1 1140549 1140854 R hypothetical protein complement(1140549..1140854) Rubrobacter xylanophilus DSM 9941 4116128 YP_643886.1 CDS Rxyl_1108 NC_008148.1 1140907 1142943 D PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase; KEGG: ana:all2981 penicillin-binding protein; glycosyl transferase family protein 1140907..1142943 Rubrobacter xylanophilus DSM 9941 4116129 YP_643887.1 CDS Rxyl_1109 NC_008148.1 1142952 1143407 D hypothetical protein 1142952..1143407 Rubrobacter xylanophilus DSM 9941 4116130 YP_643888.1 CDS Rxyl_1110 NC_008148.1 1143481 1144926 D PFAM: amino acid-binding ACT malic enzyme-like malic enzyme, NAD-binding; KEGG: sth:STH1319 malate oxidoreductase; malate dehydrogenase 1143481..1144926 Rubrobacter xylanophilus DSM 9941 4116853 YP_643889.1 CDS Rxyl_1111 NC_008148.1 1144955 1145263 D KEGG: ade:Adeh_1216 putative ferredoxin; hypothetical protein 1144955..1145263 Rubrobacter xylanophilus DSM 9941 4116854 YP_643890.1 CDS Rxyl_1112 NC_008148.1 1145260 1146444 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gsu:GSU0493 pyridine nucleotide-disulphide oxidoreductase family protein; NADH dehydrogenase complement(1145260..1146444) Rubrobacter xylanophilus DSM 9941 4116855 YP_643891.1 CDS Rxyl_1113 NC_008148.1 1146672 1146995 D hypothetical protein 1146672..1146995 Rubrobacter xylanophilus DSM 9941 4116856 YP_643892.1 CDS Rxyl_1114 NC_008148.1 1147242 1148459 D PFAM: alpha/beta hydrolase fold; KEGG: mpa:MAP2832 hypothetical protein; alpha/beta hydrolase fold protein domain-containing protein 1147242..1148459 Rubrobacter xylanophilus DSM 9941 4116857 YP_643893.1 CDS Rxyl_1115 NC_008148.1 1148452 1149081 R PFAM: GCN5-related N-acetyltransferase; KEGG: gvi:glr2217 hypothetical protein; N-acetyltransferase GCN5 complement(1148452..1149081) Rubrobacter xylanophilus DSM 9941 4116858 YP_643894.1 CDS Rxyl_1116 NC_008148.1 1149174 1149947 R PFAM: ABC-2 type transporter; KEGG: mta:Moth_0875 ABC-2; ABC transporter complement(1149174..1149947) Rubrobacter xylanophilus DSM 9941 4116859 YP_643895.1 CDS Rxyl_1117 NC_008148.1 1149940 1150893 R PFAM: ABC transporter related; SMART: ATPase; KEGG: mta:Moth_0874 ABC transporter related; ABC transporter-like protein complement(1149940..1150893) Rubrobacter xylanophilus DSM 9941 4116860 YP_643896.1 CDS Rxyl_1118 NC_008148.1 1151068 1151859 D PFAM: peptidase C60, sortase A and B; KEGG: efa:EF1094 sortase family protein; peptidase C60, sortase A and B 1151068..1151859 Rubrobacter xylanophilus DSM 9941 4116861 YP_643897.1 CDS Rxyl_1119 NC_008148.1 1151887 1152810 R PFAM: ADP-ribosylation/Crystallin J1; KEGG: pfo:Pfl_3893 ADP-ribosylation/crystallin J1; ADP-ribosylation/crystallin J1 complement(1151887..1152810) Rubrobacter xylanophilus DSM 9941 4116862 YP_643898.1 CDS Rxyl_1120 NC_008148.1 1152798 1153367 R KEGG: gvi:glr0990 protein phosphatase homolog; protein tyrosine phosphatase/dual specificity protein phosphatase complement(1152798..1153367) Rubrobacter xylanophilus DSM 9941 4116863 YP_643899.1 CDS Rxyl_1121 NC_008148.1 1153382 1153642 R hypothetical protein complement(1153382..1153642) Rubrobacter xylanophilus DSM 9941 4116864 YP_643900.1 CDS Rxyl_1122 NC_008148.1 1153649 1154173 R PFAM: molybdopterin binding domain; KEGG: bca:BCE4909 molybdenum cofactor biosynthesis protein B, putative; molybdopterin binding domain-containing protein complement(1153649..1154173) Rubrobacter xylanophilus DSM 9941 4116865 YP_643901.1 CDS Rxyl_1123 NC_008148.1 1154170 1154814 R PFAM: beta-lactamase-like; KEGG: gsu:GSU1123 metallo-beta-lactamase family protein; beta-lactamase-like protein complement(1154170..1154814) Rubrobacter xylanophilus DSM 9941 4116866 YP_643902.1 CDS Rxyl_1124 NC_008148.1 1154811 1156268 R PFAM: peptidase M17, leucyl aminopeptidase-like; KEGG: gme:Gmet_3361 peptidase M17, leucyl aminopeptidase-like; leucyl aminopeptidase complement(1154811..1156268) Rubrobacter xylanophilus DSM 9941 4116867 YP_643903.1 CDS Rxyl_1125 NC_008148.1 1156415 1157746 R KEGG: dde:Dde_0104 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region glutamine synthetase, beta-Grasp; L-glutamine synthetase complement(1156415..1157746) Rubrobacter xylanophilus DSM 9941 4116868 YP_643904.1 CDS Rxyl_1126 NC_008148.1 1157970 1158761 D KEGG: xcb:XC_4125 cation efflux system protein; hypothetical protein 1157970..1158761 Rubrobacter xylanophilus DSM 9941 4116869 YP_643905.1 CDS Rxyl_1127 NC_008148.1 1158916 1160070 R TIGRFAM: Enzymatic protein of unknown function; PFAM: glutamate--cysteine ligase, GCS2; KEGG: tfu:Tfu_2565 enzymatic protein of unknown function; hypothetical protein complement(1158916..1160070) Rubrobacter xylanophilus DSM 9941 4116870 YP_643906.1 CDS Rxyl_1128 NC_008148.1 1160169 1160627 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: dra:DR2242 thiol-specific antioxidant protein, putative; redoxin 1160169..1160627 Rubrobacter xylanophilus DSM 9941 4116871 YP_643907.1 CDS Rxyl_1129 NC_008148.1 1160624 1161727 D KEGG: gme:Gmet_3525 lipoprotein, putative; putative lipoprotein 1160624..1161727 Rubrobacter xylanophilus DSM 9941 4116872 YP_643908.1 CDS Rxyl_1130 NC_008148.1 1161751 1162659 D KEGG: mth:MTH743 putative triphosphoribosyl-dephospho-CoA synthase; hypothetical protein 1161751..1162659 Rubrobacter xylanophilus DSM 9941 4117362 YP_643909.1 CDS Rxyl_1131 NC_008148.1 1162745 1163506 D shows similarity to CbiX(S); hypothetical protein 1162745..1163506 Rubrobacter xylanophilus DSM 9941 4117363 YP_643910.1 CDS Rxyl_1132 NC_008148.1 1163496 1164302 D KEGG: hal:VNG1092C hypothetical protein; hypothetical protein 1163496..1164302 Rubrobacter xylanophilus DSM 9941 4117364 YP_643911.1 CDS Rxyl_1133 NC_008148.1 1164434 1165057 D PFAM: transport-associated; transport-associated protein 1164434..1165057 Rubrobacter xylanophilus DSM 9941 4117365 YP_643912.1 CDS Rxyl_1134 NC_008148.1 1165109 1166527 R PFAM: phosphoglucomutase/phosphomannomutase C terminal phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sma:SAV5048 putative phosphomannomutase; phosphomannomutase complement(1165109..1166527) Rubrobacter xylanophilus DSM 9941 4117366 YP_643913.1 CDS Rxyl_1135 NC_008148.1 1166577 1167119 D PFAM: Abortive infection protein; KEGG: syn:slr1288 hypothetical protein; abortive infection protein 1166577..1167119 Rubrobacter xylanophilus DSM 9941 4117367 YP_643914.1 CDS Rxyl_1136 NC_008148.1 1167116 1167658 D hypothetical protein 1167116..1167658 Rubrobacter xylanophilus DSM 9941 4117368 YP_643915.1 CDS Rxyl_1137 NC_008148.1 1167704 1168357 D PFAM: peptidase C60, sortase A and B; KEGG: sth:STH2376 sortase, putative; peptidase C60, sortase A and B 1167704..1168357 Rubrobacter xylanophilus DSM 9941 4117369 YP_643916.1 CDS Rxyl_1138 NC_008148.1 1168361 1170424 D PFAM: penicillin-binding protein, transpeptidase Penicillin-binding protein, dimerisation domain; KEGG: sma:SAV5458 putative penicillin-binding protein; peptidoglycan glycosyltransferase 1168361..1170424 Rubrobacter xylanophilus DSM 9941 4117370 YP_643917.1 CDS Rxyl_1139 NC_008148.1 1170434 1171282 D PFAM: prolipoprotein diacylglyceryl transferase; KEGG: sco:SCO7822 probable prolipoprotein diacylglyceryl transferase.; prolipoprotein diacylglyceryl transferase 1170434..1171282 Rubrobacter xylanophilus DSM 9941 4117371 YP_643918.1 CDS Rxyl_1140 NC_008148.1 1171300 1171758 D PFAM: ferric-uptake regulator; KEGG: cac:CAC1682 ferric uptake regulation protein; ferric uptake regulator family protein 1171300..1171758 Rubrobacter xylanophilus DSM 9941 4117372 YP_643919.1 CDS Rxyl_1141 NC_008148.1 1171749 1172681 D PFAM: periplasmic solute binding protein; KEGG: eba:ebA1814 ABC transporter, periplasmic binding protein precursor; periplasmic solute binding protein 1171749..1172681 Rubrobacter xylanophilus DSM 9941 4117373 YP_643920.1 CDS Rxyl_1142 NC_008148.1 1172681 1173463 D PFAM: ABC transporter related; SMART: ATPase; KEGG: sth:STH1507 ABC transporter ATP-binding protein; ABC transporter-like protein 1172681..1173463 Rubrobacter xylanophilus DSM 9941 4117374 YP_643921.1 CDS Rxyl_1143 NC_008148.1 1173456 1174319 D PFAM: ABC-3; KEGG: lin:lin1962 similar metal cations ABC transporter (permease protein); hypothetical protein 1173456..1174319 Rubrobacter xylanophilus DSM 9941 4117375 YP_643922.1 CDS Rxyl_1144 NC_008148.1 1174321 1174734 D PFAM: ferric-uptake regulator; KEGG: dra:DR0865 ferric uptake regulation protein, putative; ferric uptake regulator family protein 1174321..1174734 Rubrobacter xylanophilus DSM 9941 4117376 YP_643923.1 CDS Rxyl_1145 NC_008148.1 1174697 1175326 R PFAM: Rhomboid-like protein; KEGG: oih:OB1923 hypothetical protein; rhomboid-like protein complement(1174697..1175326) Rubrobacter xylanophilus DSM 9941 4117377 YP_643924.1 CDS Rxyl_1146 NC_008148.1 1175397 1175852 R KEGG: bmb:BruAb1_0811 hypothetical protein; hypothetical protein complement(1175397..1175852) Rubrobacter xylanophilus DSM 9941 4117378 YP_643925.1 CDS Rxyl_1147 NC_008148.1 1175947 1176816 D KEGG: dde:Dde_2402 apurinic endonuclease (APN1); TIGRFAM: apurinic endonuclease (APN1); PFAM: Xylose isomerase-like TIM barrel; SMART: AP endonuclease, family 2; endonuclease IV 1175947..1176816 Rubrobacter xylanophilus DSM 9941 4117379 YP_643926.1 CDS Rxyl_1148 NC_008148.1 1176826 1177125 D PFAM: helix-turn-helix motif; KEGG: cdi:DIP1456 putative DNA-binding protein; XRE family transcriptional regulator 1176826..1177125 Rubrobacter xylanophilus DSM 9941 4117380 YP_643927.1 CDS Rxyl_1149 NC_008148.1 1177377 1177670 R hypothetical protein complement(1177377..1177670) Rubrobacter xylanophilus DSM 9941 4116833 YP_643928.1 CDS Rxyl_1150 NC_008148.1 1177667 1178014 R hypothetical protein complement(1177667..1178014) Rubrobacter xylanophilus DSM 9941 4116834 YP_643929.1 CDS Rxyl_1151 NC_008148.1 1178067 1179083 R PFAM: FAD dependent oxidoreductase; KEGG: syn:sll1135 hypothetical protein; FAD dependent oxidoreductase complement(1178067..1179083) Rubrobacter xylanophilus DSM 9941 4116835 YP_643930.1 CDS Rxyl_1152 NC_008148.1 1179080 1179985 R PFAM: histone deacetylase superfamily; KEGG: dar:Daro_2377 histone deacetylase superfamily; histone deacetylase superfamily protein complement(1179080..1179985) Rubrobacter xylanophilus DSM 9941 4116836 YP_643931.1 CDS Rxyl_1153 NC_008148.1 1180061 1180876 D PFAM: protein of unknown function DUF72; KEGG: sat:SYN_01732 hypothetical cytosolic protein; hypothetical protein 1180061..1180876 Rubrobacter xylanophilus DSM 9941 4116837 YP_643932.1 CDS Rxyl_1154 NC_008148.1 1180884 1181636 D PFAM: peptidase A24A, prepilin type IV peptidase A24A-like; KEGG: mta:Moth_1550 peptidase A24A-like; peptidase A24A-like protein 1180884..1181636 Rubrobacter xylanophilus DSM 9941 4116838 YP_643933.1 CDS Rxyl_1155 NC_008148.1 1181645 1182595 R KEGG: nfa:nfa48610 hypothetical protein; hypothetical protein complement(1181645..1182595) Rubrobacter xylanophilus DSM 9941 4116839 YP_643934.1 CDS Rxyl_1156 NC_008148.1 1182570 1184591 R TIGRFAM: GGDEF domain; PFAM: GGDEF EAL; KEGG: ana:all1175 hypothetical protein; diguanylate cyclase/phosphodiesterase complement(1182570..1184591) Rubrobacter xylanophilus DSM 9941 4116840 YP_643935.1 CDS Rxyl_1157 NC_008148.1 1184636 1185163 R PFAM: RDD; KEGG: sth:STH460 hypothetical protein; RDD domain-containing protein complement(1184636..1185163) Rubrobacter xylanophilus DSM 9941 4116841 YP_643936.1 CDS Rxyl_1158 NC_008148.1 1185209 1185616 R PFAM: methylation; KEGG: syn:sll1694 cyanobacterial pilin; Tfp pilus assembly protein PilE complement(1185209..1185616) Rubrobacter xylanophilus DSM 9941 4116842 YP_643937.1 CDS Rxyl_1159 NC_008148.1 1185780 1187243 R hypothetical protein complement(1185780..1187243) Rubrobacter xylanophilus DSM 9941 4116843 YP_643938.1 CDS Rxyl_1160 NC_008148.1 1187243 1187866 R TIGRFAM: Prepilin-type cleavage/methylation-like; prepilin-type cleavage/methylation-like protein complement(1187243..1187866) Rubrobacter xylanophilus DSM 9941 4116844 YP_643939.1 CDS Rxyl_1161 NC_008148.1 1187863 1188288 R TIGRFAM: Prepilin-type cleavage/methylation-like; prepilin-type cleavage/methylation-like protein complement(1187863..1188288) Rubrobacter xylanophilus DSM 9941 4116845 YP_643940.1 CDS Rxyl_1162 NC_008148.1 1188281 1188862 R PFAM: methylation; Tfp pilus assembly protein FimT complement(1188281..1188862) Rubrobacter xylanophilus DSM 9941 4116846 YP_643941.1 CDS Rxyl_1163 NC_008148.1 1188871 1189644 R PFAM: sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: cyb:CYB_2489 RNA polymerase sigma factor, group 3; RNA polymerase sigma-28 subunit complement(1188871..1189644) Rubrobacter xylanophilus DSM 9941 4116847 YP_643942.1 CDS Rxyl_1164 NC_008148.1 1189653 1190864 R PFAM: type II secretion system protein; KEGG: gvi:gll2665 pilin biogenesis protein; type II secretion system protein complement(1189653..1190864) Rubrobacter xylanophilus DSM 9941 4116848 YP_643943.1 CDS Rxyl_1165 NC_008148.1 1190865 1191968 R KEGG: ttj:TTHA0365 type IV pilus assembly protein, pilus retraction protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: ATPase; pilus retraction ATPase PilT complement(1190865..1191968) Rubrobacter xylanophilus DSM 9941 4116849 YP_643944.1 CDS Rxyl_1166 NC_008148.1 1191965 1193683 R PFAM: type II secretion system protein E General secretory system II, protein E-like; SMART: ATPase; KEGG: mta:Moth_1554 type II secretion system protein E; type II secretion system protein E complement(1191965..1193683) Rubrobacter xylanophilus DSM 9941 4116850 YP_643945.1 CDS Rxyl_1167 NC_008148.1 1193937 1195064 D KEGG: gsu:GSU0146 twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: ATPase; twitching motility protein 1193937..1195064 Rubrobacter xylanophilus DSM 9941 4116851 YP_643946.1 CDS Rxyl_1168 NC_008148.1 1195075 1196241 D PFAM: peptidase M29, aminopeptidase II; KEGG: det:DET0911 aminopeptidase protein; peptidase M29, aminopeptidase II 1195075..1196241 Rubrobacter xylanophilus DSM 9941 4116852 YP_643947.1 CDS Rxyl_1169 NC_008148.1 1196246 1196485 D hypothetical protein 1196246..1196485 Rubrobacter xylanophilus DSM 9941 4116814 YP_643948.1 CDS Rxyl_1170 NC_008148.1 1196552 1197268 D TIGRFAM: HAD-superfamily hydrolase subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: gvi:gll1352 hypothetical protein; HAD family hydrolase 1196552..1197268 Rubrobacter xylanophilus DSM 9941 4116815 YP_643949.1 CDS Rxyl_1171 NC_008148.1 1197265 1197861 D PFAM: GTP cyclohydrolase I; KEGG: chy:CHY_0955 GTP cyclohydrolase I; GTP cyclohydrolase 1197265..1197861 Rubrobacter xylanophilus DSM 9941 4116816 YP_643950.1 CDS Rxyl_1172 NC_008148.1 1197836 1198636 R PFAM: ROK; KEGG: fra:Francci3_3492 polyphosphate-glucose phosphotransferase; polyphosphate glucokinase complement(1197836..1198636) Rubrobacter xylanophilus DSM 9941 4116817 YP_643951.1 CDS Rxyl_1173 NC_008148.1 1198638 1199666 R PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: tel:tll1492 ABC transporter ATP-binding protein; ABC transporter-like protein complement(1198638..1199666) Rubrobacter xylanophilus DSM 9941 4116818 YP_643952.1 CDS Rxyl_1174 NC_008148.1 1199663 1201249 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ana:alr1383 ferric iron transport system permease protein; binding-protein-dependent transport systems inner membrane component complement(1199663..1201249) Rubrobacter xylanophilus DSM 9941 4116819 YP_643953.1 CDS Rxyl_1175 NC_008148.1 1201249 1202367 R PFAM: extracellular solute-binding protein, family 1; KEGG: ana:alr1382 ferric iron transport system substrate-binding protein; extracellular solute-binding protein complement(1201249..1202367) Rubrobacter xylanophilus DSM 9941 4116820 YP_643954.1 CDS Rxyl_1176 NC_008148.1 1202376 1203002 R KEGG: fra:Francci3_1068 hypothetical protein; putative periplasmic ligand-binding sensor protein complement(1202376..1203002) Rubrobacter xylanophilus DSM 9941 4116821 YP_643955.1 CDS Rxyl_1177 NC_008148.1 1203019 1203858 R PFAM: iron permease FTR1; KEGG: pfl:PFL_3255 membrane protein, putative; iron permease FTR1 complement(1203019..1203858) Rubrobacter xylanophilus DSM 9941 4116822 YP_643956.1 CDS Rxyl_1178 NC_008148.1 1204001 1204954 D PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase NmrA-like Male sterility-like; KEGG: gka:GK0839 NDP-sugar epimerase; NAD-dependent epimerase/dehydratase 1204001..1204954 Rubrobacter xylanophilus DSM 9941 4116823 YP_643957.1 CDS Rxyl_1179 NC_008148.1 1204960 1206987 D KEGG: mta:Moth_2225 hypothetical protein; hypothetical protein 1204960..1206987 Rubrobacter xylanophilus DSM 9941 4116824 YP_643958.1 CDS Rxyl_1180 NC_008148.1 1206984 1207901 D TIGRFAM: conserved hypothetical protein; KEGG: gka:GK2681 hypothetical protein; hypothetical protein 1206984..1207901 Rubrobacter xylanophilus DSM 9941 4116825 YP_643959.1 CDS Rxyl_1181 NC_008148.1 1207898 1209334 D PFAM: sulfatase type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: gka:GK2680 hypothetical protein; type I phosphodiesterase/nucleotide pyrophosphatase 1207898..1209334 Rubrobacter xylanophilus DSM 9941 4116826 YP_643960.1 CDS Rxyl_1182 NC_008148.1 1209331 1210017 D PFAM: glycosyl transferase, family 2; KEGG: gka:GK2679 dolichyl-phosphate mannose synthase; glycosyl transferase family protein 1209331..1210017 Rubrobacter xylanophilus DSM 9941 4116827 YP_643961.1 CDS Rxyl_1183 NC_008148.1 1210014 1211063 R catalyzes the formation of oxaloglycolate from tartrate; also catalyzes the formation of pyruvate from malate and glycerate from tartrate; tartrate dehydrogenase complement(1210014..1211063) Rubrobacter xylanophilus DSM 9941 4116828 YP_643962.1 CDS Rxyl_1184 NC_008148.1 1211131 1211556 D PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: sco:SCO1156 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like protein 1211131..1211556 Rubrobacter xylanophilus DSM 9941 4116829 YP_643963.1 CDS Rxyl_1185 NC_008148.1 1211561 1212205 D PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase methyltransferase small Methyltransferase type 11 Methyltransferase type 12; KEGG: gme:Gmet_1420 protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 1211561..1212205 Rubrobacter xylanophilus DSM 9941 4116830 YP_643964.1 CDS Rxyl_1186 NC_008148.1 1212181 1212669 R PFAM: Hemerythrin HHE cation binding region; KEGG: dar:Daro_3950 hemerythrin HHE cation binding region; hemerythrin HHE cation binding protein complement(1212181..1212669) Rubrobacter xylanophilus DSM 9941 4116831 YP_643965.1 CDS Rxyl_1187 NC_008148.1 1212803 1213600 D PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: mbo:Mb2655 possible methyltransferase (methylase); type 11 methyltransferase 1212803..1213600 Rubrobacter xylanophilus DSM 9941 4116832 YP_643966.1 CDS Rxyl_1188 NC_008148.1 1213727 1214431 D PFAM: protein of unknown function DUF542, ScdA-like Hemerythrin HHE cation binding region; KEGG: gka:GK0771 hypothetical protein; hypothetical protein 1213727..1214431 Rubrobacter xylanophilus DSM 9941 4116092 YP_643967.1 CDS Rxyl_1189 NC_008148.1 1214439 1214864 D hypothetical protein 1214439..1214864 Rubrobacter xylanophilus DSM 9941 4116093 YP_643968.1 CDS Rxyl_1190 NC_008148.1 1214872 1215162 D hypothetical protein 1214872..1215162 Rubrobacter xylanophilus DSM 9941 4116094 YP_643969.1 CDS Rxyl_1191 NC_008148.1 1215159 1215470 D PFAM: protein of unknown function DUF59; KEGG: tma:TM0487 hypothetical protein; hypothetical protein 1215159..1215470 Rubrobacter xylanophilus DSM 9941 4116095 YP_643970.1 CDS Rxyl_1192 NC_008148.1 1215488 1215727 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: ttj:TTHA0177 ferredoxin; 4Fe-4S ferredoxin 1215488..1215727 Rubrobacter xylanophilus DSM 9941 4116096 YP_643971.1 CDS Rxyl_1193 NC_008148.1 1215879 1216151 D KEGG: sco:SCO6531 putative ATP/GTP binding protein; hypothetical protein 1215879..1216151 Rubrobacter xylanophilus DSM 9941 4116097 YP_643972.1 CDS Rxyl_1194 NC_008148.1 1216132 1216437 D PFAM: ferredoxin; KEGG: ath:At1g10960 ferredoxin, chloroplast, putative; ferredoxin 1216132..1216437 Rubrobacter xylanophilus DSM 9941 4116098 YP_643973.1 CDS Rxyl_1195 NC_008148.1 1216490 1217656 R PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: pha:PSHAa1103 electron transport complex protein RnfC; respiratory-chain NADH dehydrogenase domain-containing protein complement(1216490..1217656) Rubrobacter xylanophilus DSM 9941 4116099 YP_643974.1 CDS Rxyl_1196 NC_008148.1 1217683 1217946 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: ttj:TTHA0177 ferredoxin; 4Fe-4S ferredoxin complement(1217683..1217946) Rubrobacter xylanophilus DSM 9941 4116100 YP_643975.1 CDS Rxyl_1197 NC_008148.1 1218041 1218592 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: sco:SCO4603 NADH dehydrogenase subunit NuoI2; 4Fe-4S ferredoxin complement(1218041..1218592) Rubrobacter xylanophilus DSM 9941 4116101 YP_643976.1 CDS Rxyl_1198 NC_008148.1 1218795 1219430 D hypothetical protein 1218795..1219430 Rubrobacter xylanophilus DSM 9941 4116102 YP_643977.1 CDS Rxyl_1199 NC_008148.1 1219469 1220149 R KEGG: tbd:Tbd_2172 hypothetical protein; hypothetical protein complement(1219469..1220149) Rubrobacter xylanophilus DSM 9941 4116103 YP_643978.1 CDS Rxyl_1200 NC_008148.1 1220153 1220500 R PFAM: Cupin 2, conserved barrel; KEGG: cgb:cg2252 double-stranded beta-helix domain; cupin 2 barrel domain-containing protein complement(1220153..1220500) Rubrobacter xylanophilus DSM 9941 4116104 YP_643979.1 CDS Rxyl_1201 NC_008148.1 1220619 1221305 D KEGG: cef:CE1525 putative transcription regulator; cAMP-binding protein 1220619..1221305 Rubrobacter xylanophilus DSM 9941 4116105 YP_643980.1 CDS Rxyl_1202 NC_008148.1 1221318 1221680 R PFAM: Cupin 2, conserved barrel; cupin 2 barrel domain-containing protein complement(1221318..1221680) Rubrobacter xylanophilus DSM 9941 4116106 YP_643981.1 CDS Rxyl_1203 NC_008148.1 1221908 1222384 D hypothetical protein 1221908..1222384 Rubrobacter xylanophilus DSM 9941 4116107 YP_643982.1 CDS Rxyl_1204 NC_008148.1 1222384 1223568 D PFAM: major facilitator superfamily MFS_1; KEGG: gka:GK0766 nitrate/nitrite transporter; major facilitator transporter 1222384..1223568 Rubrobacter xylanophilus DSM 9941 4116108 YP_643983.1 CDS Rxyl_1205 NC_008148.1 1223572 1227222 D TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region molybdopterin oxidoreductase Fe4S4 region; KEGG: sco:SCO0216 nitrate reductase alpha chain NarG2; respiratory nitrate reductase subunit alpha apoprotein 1223572..1227222 Rubrobacter xylanophilus DSM 9941 4116109 YP_643984.1 CDS Rxyl_1206 NC_008148.1 1227222 1228838 D TIGRFAM: nitrate reductase, beta subunit; KEGG: bsu:BG11082 nitrate reductase beta chain; respiratory nitrate reductase subunit beta 1227222..1228838 Rubrobacter xylanophilus DSM 9941 4116110 YP_643985.1 CDS Rxyl_1207 NC_008148.1 1228838 1229455 D TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit; KEGG: sco:SCO0218 putative nitrate reductase delta chain NarJ2; respiratory nitrate reductase chaperone NarJ 1228838..1229455 Rubrobacter xylanophilus DSM 9941 4116111 YP_643986.1 CDS Rxyl_1208 NC_008148.1 1229452 1230234 D TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; KEGG: ser:SERP1984 respiratory nitrate reductase, gamma subunit; respiratory nitrate reductase subunit gamma 1229452..1230234 Rubrobacter xylanophilus DSM 9941 4116270 YP_643987.1 CDS Rxyl_1209 NC_008148.1 1230231 1230875 D KEGG: sru:SRU_1212 NAD dependent epimerase/dehydratase family; NAD-dependent epimerase/dehydratase family protein 1230231..1230875 Rubrobacter xylanophilus DSM 9941 4116271 YP_643988.1 CDS Rxyl_1210 NC_008148.1 1230989 1232023 D PFAM: MscS Mechanosensitive ion channel; KEGG: gsu:GSU2357 hypothetical protein; mechanosensitive ion channel MscS 1230989..1232023 Rubrobacter xylanophilus DSM 9941 4116272 YP_643989.1 CDS Rxyl_1211 NC_008148.1 1232064 1232759 D PFAM: NUDIX hydrolase; KEGG: sru:SRU_1974 hydrolase, NUDIX family protein; NUDIX hydrolase 1232064..1232759 Rubrobacter xylanophilus DSM 9941 4116273 YP_643990.1 CDS Rxyl_1212 NC_008148.1 1232857 1234167 R PFAM: CDP-alcohol phosphatidyltransferase Nucleotidyl transferase; KEGG: afu:AF0263 A. fulgidus predicted coding region AF0263; di-myo-inositol-1,3'-phosphate-1'-phosphate synthase/CTP:L-myo-inositol-1-phosphate cytidylyltransferase complement(1232857..1234167) Rubrobacter xylanophilus DSM 9941 4116274 YP_643991.1 CDS Rxyl_1213 NC_008148.1 1234416 1235771 D PFAM: Myo-inositol-1-phosphate synthase Myo-inositol-1-phosphate synthase, GAPDH-like; KEGG: ade:Adeh_1535 inositol-3-phosphate synthase; inositol-3-phosphate synthase 1234416..1235771 Rubrobacter xylanophilus DSM 9941 4116275 YP_643992.1 CDS Rxyl_1214 NC_008148.1 1235848 1236150 D PFAM: protein of unknown function DUF59; KEGG: tma:TM0487 hypothetical protein; hypothetical protein 1235848..1236150 Rubrobacter xylanophilus DSM 9941 4116276 YP_643993.1 CDS Rxyl_1215 NC_008148.1 1236332 1236823 D PFAM: HhH-GPD; KEGG: gvi:gll2018 probable DNA-3-methyladenine glycosylase; DNA-3-methyladenine glycosylase II 1236332..1236823 Rubrobacter xylanophilus DSM 9941 4116277 YP_643994.1 CDS Rxyl_1216 NC_008148.1 1236914 1237318 D PFAM: protein of unknown function UPF0047; KEGG: ade:Adeh_0927 protein of unknown function UPF0047; hypothetical protein 1236914..1237318 Rubrobacter xylanophilus DSM 9941 4116278 YP_643995.1 CDS Rxyl_1217 NC_008148.1 1237570 1238922 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: jan:Jann_0866 cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1237570..1238922 Rubrobacter xylanophilus DSM 9941 4116279 YP_643996.1 CDS Rxyl_1218 NC_008148.1 1238996 1239562 D TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: fnu:FN1709 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1238996..1239562 Rubrobacter xylanophilus DSM 9941 4116280 YP_643997.1 CDS Rxyl_1219 NC_008148.1 1239609 1240469 D hypothetical protein 1239609..1240469 Rubrobacter xylanophilus DSM 9941 4116281 YP_643998.1 CDS Rxyl_1220 NC_008148.1 1240534 1241052 D PFAM: ThiJ/PfpI; KEGG: sru:SRU_1723 protease I; ThiJ/PfpI 1240534..1241052 Rubrobacter xylanophilus DSM 9941 4116282 YP_643999.1 CDS Rxyl_1221 NC_008148.1 1241096 1241539 D hypothetical protein 1241096..1241539 Rubrobacter xylanophilus DSM 9941 4116283 YP_644000.1 CDS Rxyl_1222 NC_008148.1 1241536 1243233 R KEGG: lma:LmjF34.0690 hypothetical protein, conserved; hypothetical protein complement(1241536..1243233) Rubrobacter xylanophilus DSM 9941 4116284 YP_644001.1 CDS Rxyl_1224 NC_008148.1 1243506 1243949 R PFAM: ferric-uptake regulator; KEGG: btk:BT9727_3832 transcriptional regulator, Fur family; ferric uptake regulator family protein complement(1243506..1243949) Rubrobacter xylanophilus DSM 9941 4116285 YP_644002.1 CDS Rxyl_1225 NC_008148.1 1244007 1245674 D PFAM: peptidase S49; KEGG: ade:Adeh_1138 signal peptide peptidase SppA, 36K type; peptidase S49 1244007..1245674 Rubrobacter xylanophilus DSM 9941 4116286 YP_644003.1 CDS Rxyl_1226 NC_008148.1 1245702 1246877 D PFAM: major facilitator superfamily MFS_1; KEGG: sth:STH2595 putative fosmidmycin resistance protein; major facilitator transporter 1245702..1246877 Rubrobacter xylanophilus DSM 9941 4116287 YP_644004.1 CDS Rxyl_1227 NC_008148.1 1246957 1249401 D PFAM: MMPL; KEGG: fra:Francci3_4060 putative membrane protein; hypothetical protein 1246957..1249401 Rubrobacter xylanophilus DSM 9941 4116288 YP_644005.1 CDS Rxyl_1228 NC_008148.1 1249455 1249871 D PFAM: ferric-uptake regulator; KEGG: mta:Moth_1147 ferric uptake regulator, FUR family; ferric uptake regulator family protein 1249455..1249871 Rubrobacter xylanophilus DSM 9941 4116231 YP_644006.1 CDS Rxyl_1229 NC_008148.1 1249894 1250649 R PFAM: beta-lactamase-like; KEGG: mba:Mbar_A3142 metal dependent hydrolase; beta-lactamase-like protein complement(1249894..1250649) Rubrobacter xylanophilus DSM 9941 4116232 YP_644007.1 CDS Rxyl_1230 NC_008148.1 1250646 1251266 R PFAM: phosphoesterase, PA-phosphatase related; KEGG: sma:SAV1501 hypothetical protein; PA-phosphatase-like phosphoesterase complement(1250646..1251266) Rubrobacter xylanophilus DSM 9941 4116233 YP_644008.1 CDS Rxyl_1231 NC_008148.1 1251349 1252233 R PFAM: sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 sigma-70 region 1.2; KEGG: mta:Moth_0624 sigma 38 (RpoS); RNA polymerase sigma-28 subunit complement(1251349..1252233) Rubrobacter xylanophilus DSM 9941 4116234 YP_644009.1 CDS Rxyl_1232 NC_008148.1 1252436 1253368 D TIGRFAM: GGDEF domain; PFAM: GGDEF; KEGG: ttj:TTHA0989 GGDEF domain protein; diguanylate cyclase 1252436..1253368 Rubrobacter xylanophilus DSM 9941 4116235 YP_644010.1 CDS Rxyl_1233 NC_008148.1 1253383 1253697 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: dra:DR0446 hypothetical protein; antibiotic biosynthesis monooxygenase 1253383..1253697 Rubrobacter xylanophilus DSM 9941 4116236 YP_644011.1 CDS Rxyl_1234 NC_008148.1 1253996 1254694 D PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: syf:Synpcc7942_0127 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator 1253996..1254694 Rubrobacter xylanophilus DSM 9941 4116237 YP_644012.1 CDS Rxyl_1235 NC_008148.1 1254691 1256031 R PFAM: sulfatase; KEGG: dde:Dde_1201 sulfatase, putative; sulfatase complement(1254691..1256031) Rubrobacter xylanophilus DSM 9941 4116238 YP_644013.1 CDS Rxyl_1236 NC_008148.1 1256338 1257333 D PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: noc:Noc_1516 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1256338..1257333 Rubrobacter xylanophilus DSM 9941 4116239 YP_644014.1 CDS Rxyl_1237 NC_008148.1 1257330 1258616 R PFAM: polysaccharide biosynthesis protein; KEGG: mpa:MAP0433c hypothetical protein; polysaccharide biosynthesis protein complement(1257330..1258616) Rubrobacter xylanophilus DSM 9941 4116240 YP_644015.1 CDS Rxyl_1238 NC_008148.1 1258621 1259643 R PFAM: glycosyl transferase, family 2; KEGG: gka:GK2679 dolichyl-phosphate mannose synthase; glycosyl transferase family protein complement(1258621..1259643) Rubrobacter xylanophilus DSM 9941 4116241 YP_644016.1 CDS Rxyl_1239 NC_008148.1 1259891 1261927 D KEGG: ade:Adeh_1681 PE-PGRS family protein; hypothetical protein 1259891..1261927 Rubrobacter xylanophilus DSM 9941 4116242 YP_644017.1 CDS Rxyl_1240 NC_008148.1 1262005 1263204 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: ath:At4g33030 UDP-sulfoquinovose synthase / sulfite:UDP-glucose sulfotransferase / sulfolipid biosynthesis protein (SQD1); UDP-sulfoquinovose synthase complement(1262005..1263204) Rubrobacter xylanophilus DSM 9941 4116243 YP_644018.1 CDS Rxyl_1241 NC_008148.1 1263429 1264994 D KEGG: gsu:GSU1489 hypothetical protein; hypothetical protein 1263429..1264994 Rubrobacter xylanophilus DSM 9941 4116244 YP_644019.1 CDS Rxyl_1242 NC_008148.1 1265116 1267179 D KEGG: cvi:CV0692 probable transport portein; hypothetical protein 1265116..1267179 Rubrobacter xylanophilus DSM 9941 4116245 YP_644020.1 CDS Rxyl_1243 NC_008148.1 1267256 1268074 D KEGG: mta:Moth_0571 undecaprenol kinase, putative; TIGRFAM: undecaprenol kinase, putative; PFAM: Bacitracin resistance protein BacA; undecaprenyl-diphosphatase 1267256..1268074 Rubrobacter xylanophilus DSM 9941 4116246 YP_644021.1 CDS Rxyl_1244 NC_008148.1 1268257 1269372 D PFAM: prephenate dehydratase Chorismate mutase amino acid-binding ACT; KEGG: aae:aq_951 chorismate mutase/prephenate dehydratase; prephenate dehydratase/chorismate mutase 1268257..1269372 Rubrobacter xylanophilus DSM 9941 4116247 YP_644022.1 CDS Rxyl_1246 NC_008148.1 1269666 1270388 D hypothetical protein 1269666..1270388 Rubrobacter xylanophilus DSM 9941 4116248 YP_644023.1 CDS Rxyl_1247 NC_008148.1 1270534 1271127 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: ttj:TTHA0359 cold shock protein; cold-shock DNA-binding protein family protein 1270534..1271127 Rubrobacter xylanophilus DSM 9941 4116249 YP_644024.1 CDS Rxyl_1248 NC_008148.1 1271134 1271796 R PFAM: Phosphoglycerate mutase; KEGG: ade:Adeh_2893 phosphoglycerate mutase; phosphoglycerate mutase complement(1271134..1271796) Rubrobacter xylanophilus DSM 9941 4116250 YP_644025.1 CDS Rxyl_1249 NC_008148.1 1271921 1272718 D hypothetical protein 1271921..1272718 Rubrobacter xylanophilus DSM 9941 4116407 YP_644026.1 CDS Rxyl_1250 NC_008148.1 1272709 1272960 R PFAM: glutaredoxin glutathione S-transferase-like; KEGG: cpe:CPE2439 probable glutaredoxin; glutaredoxin complement(1272709..1272960) Rubrobacter xylanophilus DSM 9941 4116408 YP_644027.1 CDS Rxyl_1251 NC_008148.1 1273232 1275007 D KEGG: bce:BC0606 vancomycin B-type resistance protein VanW; hypothetical protein 1273232..1275007 Rubrobacter xylanophilus DSM 9941 4116409 YP_644028.1 CDS Rxyl_1252 NC_008148.1 1275008 1275478 R PFAM: Endoribonuclease L-PSP; KEGG: nfa:nfa3440 hypothetical protein; endoribonuclease L-PSP complement(1275008..1275478) Rubrobacter xylanophilus DSM 9941 4116410 YP_644029.1 CDS Rxyl_1253 NC_008148.1 1275482 1275976 R PFAM: flavin reductase-like, FMN-binding; KEGG: syn:slr0001 hypothetical protein; flavin reductase-like protein complement(1275482..1275976) Rubrobacter xylanophilus DSM 9941 4116411 YP_644030.1 CDS Rxyl_1254 NC_008148.1 1276042 1277085 D KEGG: sma:SAV4116 putative membrane protein; hypothetical protein 1276042..1277085 Rubrobacter xylanophilus DSM 9941 4116412 YP_644031.1 CDS Rxyl_1255 NC_008148.1 1277082 1277648 D KEGG: sth:STH494 molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein A 1277082..1277648 Rubrobacter xylanophilus DSM 9941 4116413 YP_644032.1 CDS Rxyl_1256 NC_008148.1 1277645 1278232 D PFAM: protein of unknown function DUF218; KEGG: rru:Rru_A2551 protein of unknown function DUF218; hypothetical protein 1277645..1278232 Rubrobacter xylanophilus DSM 9941 4116414 YP_644033.1 CDS Rxyl_1257 NC_008148.1 1278241 1279074 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: sth:STH2110 hypothetical protein; hypothetical protein 1278241..1279074 Rubrobacter xylanophilus DSM 9941 4116415 YP_644034.1 CDS Rxyl_1258 NC_008148.1 1279099 1279641 D KEGG: sma:SAV1204 putative IS630 family transposase; IS630 family transposase 1279099..1279641 Rubrobacter xylanophilus DSM 9941 4116416 YP_644035.1 CDS Rxyl_1259 NC_008148.1 1279641 1280237 D hypothetical protein 1279641..1280237 Rubrobacter xylanophilus DSM 9941 4116417 YP_644036.1 CDS Rxyl_1260 NC_008148.1 1280301 1280930 D hypothetical protein 1280301..1280930 Rubrobacter xylanophilus DSM 9941 4116418 YP_644037.1 CDS Rxyl_1261 NC_008148.1 1280927 1281655 R PFAM: beta-lactamase-like; KEGG: mka:MK1542 predicted Zn-dependent hydrolase of the beta-lactamase superfamily; beta-lactamase-like protein complement(1280927..1281655) Rubrobacter xylanophilus DSM 9941 4116419 YP_644038.1 CDS Rxyl_1262 NC_008148.1 1281788 1283587 D PFAM: glycoside hydrolase 15-related; KEGG: sma:SAV98 putative glycosyl hydrolase; glycoside hydrolase 15-like protein 1281788..1283587 Rubrobacter xylanophilus DSM 9941 4116420 YP_644039.1 CDS Rxyl_1263 NC_008148.1 1283667 1284497 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ade:Adeh_3575 nitrilase/cyanide hydratase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1283667..1284497 Rubrobacter xylanophilus DSM 9941 4116421 YP_644040.1 CDS Rxyl_1264 NC_008148.1 1284508 1285869 R KEGG: noc:Noc_1578 L-lactate permease; L-lactate permease complement(1284508..1285869) Rubrobacter xylanophilus DSM 9941 4116422 YP_644041.1 CDS Rxyl_1265 NC_008148.1 1285914 1286525 D PFAM: helix-turn-helix motif Cupin 2, conserved barrel; KEGG: atc:AGR_C_418 hypothetical protein; XRE family transcriptional regulator 1285914..1286525 Rubrobacter xylanophilus DSM 9941 4116423 YP_644042.1 CDS Rxyl_1266 NC_008148.1 1286501 1287004 R hypothetical protein complement(1286501..1287004) Rubrobacter xylanophilus DSM 9941 4116424 YP_644043.1 CDS Rxyl_1267 NC_008148.1 1287091 1288224 R PFAM: Quinolinate phosphoribosyl transferase; KEGG: tko:TK1676 nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyl transferase complement(1287091..1288224) Rubrobacter xylanophilus DSM 9941 4116425 YP_644044.1 CDS Rxyl_1268 NC_008148.1 1288442 1291651 D PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: mag:amb3438 sensor protein GacS; multi-sensor hybrid histidine kinase 1288442..1291651 Rubrobacter xylanophilus DSM 9941 4115994 YP_644045.1 CDS Rxyl_1269 NC_008148.1 1291665 1293212 D PFAM: gamma-glutamyltranspeptidase; KEGG: gvi:glr2359 gamma-glutamyltranspeptidase; gamma-glutamyltransferase 1291665..1293212 Rubrobacter xylanophilus DSM 9941 4115995 YP_644046.1 CDS Rxyl_1270 NC_008148.1 1293205 1294125 D TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: tth:TTC1132 arginase; arginase 1293205..1294125 Rubrobacter xylanophilus DSM 9941 4115996 YP_644047.1 CDS Rxyl_1271 NC_008148.1 1294122 1295558 R PFAM: cation transporter; KEGG: dde:Dde_2029 K+ transporter trk; cation transporter complement(1294122..1295558) Rubrobacter xylanophilus DSM 9941 4115997 YP_644048.1 CDS trkA NC_008148.1 1295548 1296879 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(1295548..1296879) Rubrobacter xylanophilus DSM 9941 4115998 YP_644049.1 CDS Rxyl_1273 NC_008148.1 1296890 1297564 R PFAM: TrkA-N TrkA-C 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: cpe:CPE1890 probable potassium uptake system protein; hypothetical protein complement(1296890..1297564) Rubrobacter xylanophilus DSM 9941 4115999 YP_644050.1 CDS Rxyl_1274 NC_008148.1 1297561 1298889 R PFAM: cation transporter; KEGG: mta:Moth_1755 K+ transporter trk; cation transporter complement(1297561..1298889) Rubrobacter xylanophilus DSM 9941 4116000 YP_644051.1 CDS Rxyl_1275 NC_008148.1 1298915 1299793 R TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding ATP-citrate lyase/succinyl-CoA ligase; KEGG: afu:AF2185 succinyl-CoA synthetase alpha chain; succinyl-CoA synthetase subunit alpha complement(1298915..1299793) Rubrobacter xylanophilus DSM 9941 4116001 YP_644052.1 CDS Rxyl_1276 NC_008148.1 1299797 1300948 R KEGG: lxx:Lxx19720 succinyl-CoA synthetase, beta chain; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: phosphoribosylglycinamide synthetase ATP-citrate lyase/succinyl-CoA ligase ATP-grasp; succinyl-CoA synthetase subunit beta complement(1299797..1300948) Rubrobacter xylanophilus DSM 9941 4116002 YP_644053.1 CDS Rxyl_1277 NC_008148.1 1301145 1303490 D PFAM: peptidase M6, immune inhibitor A; KEGG: sma:SAV5155 putative secreted protease; peptidase M6, immune inhibitor A 1301145..1303490 Rubrobacter xylanophilus DSM 9941 4116003 YP_644054.1 CDS Rxyl_1278 NC_008148.1 1303552 1304241 D PFAM: protein of unknown function DUF554; KEGG: afu:AF1248 hypothetical protein; hypothetical protein 1303552..1304241 Rubrobacter xylanophilus DSM 9941 4116004 YP_644055.1 CDS Rxyl_1279 NC_008148.1 1304258 1304869 R hypothetical protein complement(1304258..1304869) Rubrobacter xylanophilus DSM 9941 4116005 YP_644056.1 CDS Rxyl_1280 NC_008148.1 1305034 1305255 D hypothetical protein 1305034..1305255 Rubrobacter xylanophilus DSM 9941 4116006 YP_644057.1 CDS Rxyl_1281 NC_008148.1 1305265 1305492 D hypothetical protein 1305265..1305492 Rubrobacter xylanophilus DSM 9941 4116007 YP_644058.1 CDS Rxyl_1282 NC_008148.1 1305499 1305927 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: tte:TTE1219 lactoylglutathione lyase and related lyase; methylmalonyl-CoA epimerase 1305499..1305927 Rubrobacter xylanophilus DSM 9941 4116008 YP_644059.1 CDS Rxyl_1283 NC_008148.1 1305942 1307537 D KEGG: tte:TTE2389 Methylmalonyl-CoA mutase, N-terminal domain/subunit; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; PFAM: methylmalonyl-CoA mutase; methylmalonyl-CoA mutase 1305942..1307537 Rubrobacter xylanophilus DSM 9941 4116009 YP_644060.1 CDS Rxyl_1284 NC_008148.1 1307579 1308070 R PFAM: regulatory protein, MarR; KEGG: rso:RSc3139 putative transcription regulator protein; MarR family transcriptional regulator complement(1307579..1308070) Rubrobacter xylanophilus DSM 9941 4116010 YP_644061.1 CDS Rxyl_1285 NC_008148.1 1308131 1309363 D PFAM: monooxygenase, FAD-binding; KEGG: plu:plu2236 hypothetical protein; monooxygenase 1308131..1309363 Rubrobacter xylanophilus DSM 9941 4116011 YP_644062.1 CDS Rxyl_1286 NC_008148.1 1309469 1309987 D KEGG: mhu:Mhun_0018 peptidase S8 and S53, subtilisin, kexin, sedolisin; hypothetical protein 1309469..1309987 Rubrobacter xylanophilus DSM 9941 4116012 YP_644063.1 CDS Rxyl_1287 NC_008148.1 1310104 1311279 D PFAM: protein of unknown function DUF59; KEGG: sco:SCO5152 putative ATP-binding protein; hypothetical protein 1310104..1311279 Rubrobacter xylanophilus DSM 9941 4116013 YP_644064.1 CDS Rxyl_1288 NC_008148.1 1311299 1312288 R PFAM: beta-lactamase-like; KEGG: reu:Reut_A0157 beta-lactamase-like; beta-lactamase-like protein complement(1311299..1312288) Rubrobacter xylanophilus DSM 9941 4116951 YP_644065.1 CDS Rxyl_1289 NC_008148.1 1312295 1312744 R PFAM: MaoC-like dehydratase; KEGG: pfl:PFL_2678 MaoC family protein; MaoC-like dehydratase complement(1312295..1312744) Rubrobacter xylanophilus DSM 9941 4116952 YP_644066.1 CDS Rxyl_1290 NC_008148.1 1312751 1313728 R catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase complement(1312751..1313728) Rubrobacter xylanophilus DSM 9941 4116953 YP_644067.1 CDS Rxyl_1291 NC_008148.1 1313918 1314493 D PFAM: nitroreductase; KEGG: bld:BLi00873 hypothetical protein; nitroreductase 1313918..1314493 Rubrobacter xylanophilus DSM 9941 4116954 YP_644068.1 CDS Rxyl_1292 NC_008148.1 1314670 1315485 R PFAM: beta-lactamase-like; KEGG: sco:SCO0130 beta-lactamase; beta-lactamase-like protein complement(1314670..1315485) Rubrobacter xylanophilus DSM 9941 4116955 YP_644069.1 CDS Rxyl_1293 NC_008148.1 1315610 1316617 D PFAM: Allergen V5/Tpx-1 related; KEGG: fra:Francci3_3457 allergen V5/TPX-1 related; allergen V5/Tpx-1-like protein 1315610..1316617 Rubrobacter xylanophilus DSM 9941 4116956 YP_644070.1 CDS Rxyl_1294 NC_008148.1 1316571 1317833 R TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase Lycopene beta and epsilon cyclase; KEGG: fra:Francci3_0537 geranylgeranyl reductase; geranylgeranyl reductase complement(1316571..1317833) Rubrobacter xylanophilus DSM 9941 4116957 YP_644071.1 CDS Rxyl_1295 NC_008148.1 1318147 1320066 R PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: mhu:Mhun_0018 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin complement(1318147..1320066) Rubrobacter xylanophilus DSM 9941 4116958 YP_644072.1 CDS Rxyl_1296 NC_008148.1 1320202 1321242 R hypothetical protein complement(1320202..1321242) Rubrobacter xylanophilus DSM 9941 4116959 YP_644073.1 CDS Rxyl_1297 NC_008148.1 1321391 1322401 D PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: mta:Moth_0993 isocitrate dehydrogenase (NAD+); isocitrate dehydrogenase (NAD+) 1321391..1322401 Rubrobacter xylanophilus DSM 9941 4116960 YP_644074.1 CDS Rxyl_1298 NC_008148.1 1322460 1323584 D PFAM: glycosyl transferase, group 1; KEGG: cyb:CYB_2399 glycosyl transferase, group 1; group 1 glycosyl transferase 1322460..1323584 Rubrobacter xylanophilus DSM 9941 4116961 YP_644075.1 CDS Rxyl_1299 NC_008148.1 1323581 1324042 D PFAM: GtrA-like protein; KEGG: pca:Pcar_1743 YngA; GtrA-like protein 1323581..1324042 Rubrobacter xylanophilus DSM 9941 4116962 YP_644076.1 CDS Rxyl_1300 NC_008148.1 1324426 1326345 D TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S) TGS Anticodon-binding Threonyl/alanyl tRNA synthetase, SAD; KEGG: ttj:TTHA1875 threonyl-tRNA synthetase; Ser-tRNA(Thr) hydrolase/threonyl-tRNA synthetase 1324426..1326345 Rubrobacter xylanophilus DSM 9941 4116963 YP_644077.1 CDS Rxyl_1301 NC_008148.1 1326530 1327057 D TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: tfu:Tfu_2066 initiation factor 3; translation initiation factor 3 1326530..1327057 Rubrobacter xylanophilus DSM 9941 4116964 YP_644078.1 CDS Rxyl_1302 NC_008148.1 1327191 1327388 D PFAM: ribosomal protein L35; KEGG: tfu:Tfu_2065 ribosomal protein L35; 50S ribosomal protein L35 1327191..1327388 Rubrobacter xylanophilus DSM 9941 4116965 YP_644079.1 CDS rplT NC_008148.1 1327389 1327790 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1327389..1327790 Rubrobacter xylanophilus DSM 9941 4116966 YP_644080.1 CDS Rxyl_1304 NC_008148.1 1327804 1328475 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sth:STH1097 rRNA methyltransferase; tRNA/rRNA methyltransferase SpoU 1327804..1328475 Rubrobacter xylanophilus DSM 9941 4116967 YP_644081.1 CDS Rxyl_1305 NC_008148.1 1328483 1329514 D KEGG: mta:Moth_1751 phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase, class IIc aminoacyl tRNA synthetase, class II-like; phenylalanyl-tRNA synthetase subunit alpha 1328483..1329514 Rubrobacter xylanophilus DSM 9941 4116968 YP_644082.1 CDS Rxyl_1306 NC_008148.1 1329534 1331966 D TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: mta:Moth_1750 phenylalanyl-tRNA synthetase, beta subunit; phenylalanyl-tRNA synthetase subunit beta 1329534..1331966 Rubrobacter xylanophilus DSM 9941 4116969 YP_644083.1 CDS Rxyl_1307 NC_008148.1 1331929 1332522 R PFAM: GCN5-related N-acetyltransferase; KEGG: bha:BH2121 hypothetical protein; N-acetyltransferase GCN5 complement(1331929..1332522) Rubrobacter xylanophilus DSM 9941 4115974 YP_644084.1 CDS Rxyl_1308 NC_008148.1 1332609 1332983 D KEGG: gvi:gll2423 hypothetical protein; hypothetical protein 1332609..1332983 Rubrobacter xylanophilus DSM 9941 4115975 YP_644085.1 CDS Rxyl_1309 NC_008148.1 1333006 1333578 D TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); KEGG: chy:CHY_1567 DNA-3-methyladenine glycosylase; DNA-3-methyladenine glycosylase 1333006..1333578 Rubrobacter xylanophilus DSM 9941 4115976 YP_644086.1 CDS Rxyl_1310 NC_008148.1 1333562 1335676 R KEGG: tel:tll0049 penicillin-binding protein; TIGRFAM: Penicillin-binding protein 1A; PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase; penicillin-binding protein 1A complement(1333562..1335676) Rubrobacter xylanophilus DSM 9941 4115977 YP_644087.1 CDS Rxyl_1311 NC_008148.1 1335753 1336919 D TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib RNA-binding S4; KEGG: bha:BH3228 tyrosyl-tRNA synthetase; tyrosyl-tRNA synthetase 1335753..1336919 Rubrobacter xylanophilus DSM 9941 4115978 YP_644088.1 CDS Rxyl_1312 NC_008148.1 1342354 1343700 D KEGG: hma:pNG7288 putative phosphoesterase; hypothetical protein 1342354..1343700 Rubrobacter xylanophilus DSM 9941 4115979 YP_644089.1 CDS Rxyl_1313 NC_008148.1 1343768 1344160 D PFAM: zinc finger, DksA/TraR C4-type; KEGG: bcl:ABC1986 general stress protein GSP160; TraR/DksA family transcriptional regulator 1343768..1344160 Rubrobacter xylanophilus DSM 9941 4115980 YP_644090.1 CDS Rxyl_1314 NC_008148.1 1344212 1345396 D KEGG: btk:BT9727_0285 anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase (arsA); PFAM: Anion-transporting ATPase; arsenite-activated ATPase 1344212..1345396 Rubrobacter xylanophilus DSM 9941 4115981 YP_644091.1 CDS Rxyl_1315 NC_008148.1 1345380 1345598 D hypothetical protein 1345380..1345598 Rubrobacter xylanophilus DSM 9941 4115982 YP_644092.1 CDS Rxyl_1316 NC_008148.1 1345870 1346766 D with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 1345870..1346766 Rubrobacter xylanophilus DSM 9941 4115983 YP_644093.1 CDS Rxyl_1317 NC_008148.1 1346756 1347370 D PFAM: SNO glutamine amidotransferase CobB/CobQ-like glutamine amidotransferase; KEGG: mta:Moth_0010 SNO glutamine amidotransferase; SNO glutamine amidotransferase 1346756..1347370 Rubrobacter xylanophilus DSM 9941 4115984 YP_644094.1 CDS Rxyl_1318 NC_008148.1 1347357 1348109 D PFAM: protein of unknown function DUF28; KEGG: gme:Gmet_0743 hypothetical protein; hypothetical protein 1347357..1348109 Rubrobacter xylanophilus DSM 9941 4115985 YP_644095.1 CDS Rxyl_1319 NC_008148.1 1348128 1348448 R PFAM: small multidrug resistance protein; KEGG: sco:SCO1918 putative integral membrane protein; small multidrug resistance protein complement(1348128..1348448) Rubrobacter xylanophilus DSM 9941 4115986 YP_644096.1 CDS Rxyl_1320 NC_008148.1 1348445 1349056 R PFAM: regulatory protein, TetR; KEGG: bce:BC1059 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1348445..1349056) Rubrobacter xylanophilus DSM 9941 4115987 YP_644097.1 CDS Rxyl_1321 NC_008148.1 1349068 1349658 D PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: mta:Moth_2140 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 1349068..1349658 Rubrobacter xylanophilus DSM 9941 4115988 YP_644098.1 CDS Rxyl_1322 NC_008148.1 1349747 1350286 D TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; KEGG: tte:TTE1178 Holliday junction resolvasome endonuclease subunit; crossover junction endodeoxyribonuclease RuvC 1349747..1350286 Rubrobacter xylanophilus DSM 9941 4115989 YP_644099.1 CDS Rxyl_1323 NC_008148.1 1350290 1350880 D KEGG: cvi:CV4223 holliday junction DNA helicase; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein, RuvA RuvA-like; SMART: Helix-hairpin-helix DNA-binding, class 1; Holliday junction DNA helicase subunit RuvA 1350290..1350880 Rubrobacter xylanophilus DSM 9941 4115990 YP_644100.1 CDS ruvB NC_008148.1 1350881 1351948 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1350881..1351948 Rubrobacter xylanophilus DSM 9941 4115991 YP_644101.1 CDS Rxyl_1325 NC_008148.1 1351979 1352257 D hypothetical protein 1351979..1352257 Rubrobacter xylanophilus DSM 9941 4115992 YP_644102.1 CDS Rxyl_1326 NC_008148.1 1352268 1353968 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(1352268..1353968) Rubrobacter xylanophilus DSM 9941 4115993 YP_644103.1 CDS Rxyl_1327 NC_008148.1 1354035 1354601 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sil:SPO0391 biphenyl-2,3-diol 1,2-dioxygenase III; glyoxalase/bleomycin resistance protein/dioxygenase 1354035..1354601 Rubrobacter xylanophilus DSM 9941 4116014 YP_644104.1 CDS Rxyl_1328 NC_008148.1 1354635 1354859 D KEGG: mta:Moth_1699 hypothetical protein; hypothetical protein 1354635..1354859 Rubrobacter xylanophilus DSM 9941 4116015 YP_644105.1 CDS Rxyl_1329 NC_008148.1 1354866 1355870 D PFAM: Queuosine biosynthesis protein; KEGG: mta:Moth_1695 S-adenosylmethionine; queuosine biosynthesis protein 1354866..1355870 Rubrobacter xylanophilus DSM 9941 4116016 YP_644106.1 CDS Rxyl_1330 NC_008148.1 1355891 1356988 D KEGG: sth:STH1166 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 1355891..1356988 Rubrobacter xylanophilus DSM 9941 4116017 YP_644107.1 CDS Rxyl_1331 NC_008148.1 1356975 1358147 R KEGG: tth:TTC1121 hypothetical protein; hypothetical protein complement(1356975..1358147) Rubrobacter xylanophilus DSM 9941 4116018 YP_644108.1 CDS Rxyl_1332 NC_008148.1 1358369 1359085 R PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: tfu:Tfu_0117 cyclic nucleotide-binding:bacterial regulatory protein, Crp; Crp/FNR family transcriptional regulator complement(1358369..1359085) Rubrobacter xylanophilus DSM 9941 4116019 YP_644109.1 CDS Rxyl_1333 NC_008148.1 1359294 1359983 D KEGG: ttj:TTHA1483 conserved putative protein; hypothetical protein 1359294..1359983 Rubrobacter xylanophilus DSM 9941 4116020 YP_644110.1 CDS Rxyl_1334 NC_008148.1 1360043 1361506 D TIGRFAM: protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: sco:SCO6160 putative SecDF protein-export membrane protein; protein-export membrane protein SecD 1360043..1361506 Rubrobacter xylanophilus DSM 9941 4116021 YP_644111.1 CDS Rxyl_1335 NC_008148.1 1361519 1362397 D TIGRFAM: SecF protein; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: fra:Francci3_1374 SecF protein; protein translocase subunit secF 1361519..1362397 Rubrobacter xylanophilus DSM 9941 4116022 YP_644112.1 CDS Rxyl_1336 NC_008148.1 1362451 1362879 D KEGG: mma:MM2706 hypothetical protein; hypothetical protein 1362451..1362879 Rubrobacter xylanophilus DSM 9941 4116023 YP_644113.1 CDS Rxyl_1337 NC_008148.1 1362906 1364555 D PFAM: ABC-1; KEGG: gka:GK1754 ABC transporter; 2-octaprenylphenol hydroxylase 1362906..1364555 Rubrobacter xylanophilus DSM 9941 4116024 YP_644114.1 CDS Rxyl_1338 NC_008148.1 1364590 1366818 D KEGG: tfu:Tfu_2090 RelA/SpoT protein; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT TGS metal-dependent phosphohydrolase, HD subdomain RelA/SpoT; SMART: Metal-dependent phosphohydrolase, HD region; (p)ppGpp synthetase I SpoT/RelA 1364590..1366818 Rubrobacter xylanophilus DSM 9941 4116025 YP_644115.1 CDS Rxyl_1339 NC_008148.1 1366830 1367408 D PFAM: beta-lactamase-like; KEGG: gsu:GSU1123 metallo-beta-lactamase family protein; beta-lactamase-like protein 1366830..1367408 Rubrobacter xylanophilus DSM 9941 4116026 YP_644116.1 CDS Rxyl_1340 NC_008148.1 1367405 1368679 D KEGG: efa:EF1971 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S) Anticodon-binding; histidyl-tRNA synthetase 1367405..1368679 Rubrobacter xylanophilus DSM 9941 4116027 YP_644117.1 CDS Rxyl_1341 NC_008148.1 1368720 1369421 D PFAM: Silent information regulator protein Sir2; KEGG: pai:PAE3500 NAD-dependent deacetylase; silent information regulator protein Sir2 1368720..1369421 Rubrobacter xylanophilus DSM 9941 4116028 YP_644118.1 CDS Rxyl_1342 NC_008148.1 1369429 1370238 D PFAM: Ion transport protein Ion transport 2; KEGG: det:DET0408 cation channel family protein; Ion transport protein 1369429..1370238 Rubrobacter xylanophilus DSM 9941 4116029 YP_644119.1 CDS Rxyl_1343 NC_008148.1 1370144 1371712 R PFAM: glycosyl transferase, family 2; KEGG: gvi:gll3051 hypothetical protein; glycosyl transferase family protein complement(1370144..1371712) Rubrobacter xylanophilus DSM 9941 4116030 YP_644120.1 CDS Rxyl_1345 NC_008148.1 1372892 1373467 R PFAM: NodS Methyltransferase type 11 Methyltransferase type 12; KEGG: dra:DRA0130 methyltransferase, putative; type 12 methyltransferase complement(1372892..1373467) Rubrobacter xylanophilus DSM 9941 4116031 YP_644121.1 CDS Rxyl_1346 NC_008148.1 1373467 1374561 R KEGG: gvi:glr3048 hypothetical protein; hypothetical protein complement(1373467..1374561) Rubrobacter xylanophilus DSM 9941 4116032 YP_644122.1 CDS Rxyl_1347 NC_008148.1 1374558 1375148 R PFAM: polysaccharide deacetylase; KEGG: sth:STH2168 polysaccharide deacetylase; polysaccharide deacetylase complement(1374558..1375148) Rubrobacter xylanophilus DSM 9941 4117166 YP_644123.1 CDS Rxyl_1348 NC_008148.1 1375310 1376005 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1375310..1376005 Rubrobacter xylanophilus DSM 9941 4117167 YP_644124.1 CDS Rxyl_1349 NC_008148.1 1376020 1377339 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like FAD dependent oxidoreductase FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nfa:nfa22540 putative flavocytochrome C; fumarate reductase/succinate dehydrogenase flavoprotein-like protein 1376020..1377339 Rubrobacter xylanophilus DSM 9941 4117168 YP_644125.1 CDS Rxyl_1350 NC_008148.1 1377336 1378427 R ATP-dependent carboxylate-amine ligase; carboxylate-amine ligase complement(1377336..1378427) Rubrobacter xylanophilus DSM 9941 4117169 YP_644126.1 CDS Rxyl_1351 NC_008148.1 1378452 1380254 R TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD tRNA synthetase, class II (D, K and N) nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: chy:CHY_2204 aspartyl-tRNA synthetase; aspartyl-tRNA synthetase complement(1378452..1380254) Rubrobacter xylanophilus DSM 9941 4117170 YP_644127.1 CDS Rxyl_1352 NC_008148.1 1380523 1381338 D hypothetical protein 1380523..1381338 Rubrobacter xylanophilus DSM 9941 4117171 YP_644128.1 CDS Rxyl_1353 NC_008148.1 1381382 1382551 D PFAM: aminotransferase, class V aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: chy:CHY_2199 cysteine desulfurase; class V aminotransferase 1381382..1382551 Rubrobacter xylanophilus DSM 9941 4117172 YP_644129.1 CDS Rxyl_1354 NC_008148.1 1382557 1384023 D PFAM: nitrogen-fixing NifU-like-like tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: chy:CHY_2197 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1382557..1384023 Rubrobacter xylanophilus DSM 9941 4117173 YP_644130.1 CDS Rxyl_1355 NC_008148.1 1384039 1384428 D KEGG: lxx:Lxx10890 secreted protein; hypothetical protein 1384039..1384428 Rubrobacter xylanophilus DSM 9941 4117174 YP_644131.1 CDS Rxyl_1356 NC_008148.1 1384425 1384700 D hypothetical protein 1384425..1384700 Rubrobacter xylanophilus DSM 9941 4117175 YP_644132.1 CDS Rxyl_1357 NC_008148.1 1384697 1384975 D hypothetical protein 1384697..1384975 Rubrobacter xylanophilus DSM 9941 4117176 YP_644133.1 CDS Rxyl_1358 NC_008148.1 1384972 1385748 D PFAM: Bacterio-opsin activator, HTH sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: sma:SAV3013 putative RNA polymerase sigma factor; RNA polymerase sigma-28 subunit 1384972..1385748 Rubrobacter xylanophilus DSM 9941 4117177 YP_644134.1 CDS Rxyl_1359 NC_008148.1 1385783 1388431 D KEGG: deh:cbdb_A65 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase, class IIc phosphoesterase, DHHA1 Threonyl/alanyl tRNA synthetase, SAD; alanyl-tRNA synthetase 1385783..1388431 Rubrobacter xylanophilus DSM 9941 4117178 YP_644135.1 CDS Rxyl_1360 NC_008148.1 1388428 1388847 D PFAM: Holliday junction resolvase YqgF; SMART: Resolvase, RNase H-like fold; KEGG: nfa:nfa36430 putative Holliday junction resolvase; Holliday junction resolvase YqgF 1388428..1388847 Rubrobacter xylanophilus DSM 9941 4117179 YP_644136.1 CDS Rxyl_1361 NC_008148.1 1388844 1389956 D PFAM: aminodeoxychorismate lyase; KEGG: cpe:CPE1773 conserved hypothetical protein; aminodeoxychorismate lyase 1388844..1389956 Rubrobacter xylanophilus DSM 9941 4117180 YP_644137.1 CDS Rxyl_1362 NC_008148.1 1389958 1390812 D TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase Shikimate dehydrogenase substrate binding-like; KEGG: mta:Moth_1558 shikimate 5-dehydrogenase; shikimate dehydrogenase 1389958..1390812 Rubrobacter xylanophilus DSM 9941 4117181 YP_644138.1 CDS Rxyl_1363 NC_008148.1 1390878 1391555 D PFAM: ribulose-phosphate 3-epimerase; KEGG: gka:GK1178 ribulose-phosphate 3-epimerase; ribulose-5-phosphate 3-epimerase 1390878..1391555 Rubrobacter xylanophilus DSM 9941 4117182 YP_644139.1 CDS Rxyl_1364 NC_008148.1 1391764 1392873 D KEGG: ade:Adeh_2742 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD Riboflavin-specific deaminase-like; PFAM: CMP/dCMP deaminase, zinc-binding bifunctional deaminase-reductase-like; diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 1391764..1392873 Rubrobacter xylanophilus DSM 9941 4117183 YP_644140.1 CDS Rxyl_1365 NC_008148.1 1392854 1393489 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1392854..1393489 Rubrobacter xylanophilus DSM 9941 4117184 YP_644141.1 CDS Rxyl_1366 NC_008148.1 1393479 1394681 D PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase GTP cyclohydrolase II; KEGG: gme:Gmet_1626 3,4-dihydroxy-2-butanone 4-phosphate synthase:GTP cyclohydrolase II; GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase 1393479..1394681 Rubrobacter xylanophilus DSM 9941 4117185 YP_644142.1 CDS Rxyl_1367 NC_008148.1 1394682 1395221 D PFAM: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: gka:GK2294 riboflavin synthasebeta subunit; 6,7-dimethyl-8-ribityllumazine synthase 1394682..1395221 Rubrobacter xylanophilus DSM 9941 4116033 YP_644143.1 CDS Rxyl_1368 NC_008148.1 1395175 1395390 R PFAM: ribosomal protein L28; KEGG: tfu:Tfu_0645 ribosomal protein L28; 50S ribosomal protein L28 complement(1395175..1395390) Rubrobacter xylanophilus DSM 9941 4116034 YP_644144.1 CDS Rxyl_1369 NC_008148.1 1395572 1397152 D PFAM: Dak phosphatase; KEGG: cpe:CPE1732 conserved hypothetical protein; Dak phosphatase 1395572..1397152 Rubrobacter xylanophilus DSM 9941 4116035 YP_644145.1 CDS Rxyl_1370 NC_008148.1 1397149 1397964 D TIGRFAM: degV family protein; PFAM: DegV; KEGG: sth:STH1449 hypothetical protein; degV family protein 1397149..1397964 Rubrobacter xylanophilus DSM 9941 4116036 YP_644146.1 CDS Rxyl_1371 NC_008148.1 1397945 1400077 D TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: helicase-like nucleic acid binding, OB-fold, tRNA/helicase-type DEAD/DEAH box helicase-like; KEGG: sth:STH1384 ATP-dependent DNA helicase; ATP-dependent DNA helicase RecG 1397945..1400077 Rubrobacter xylanophilus DSM 9941 4116037 YP_644147.1 CDS Rxyl_1372 NC_008148.1 1400080 1400613 D PFAM: putative RNA methylase conserved hypothetical protein 95 methyltransferase small; KEGG: ade:Adeh_1733 hypothetical protein; hypothetical protein 1400080..1400613 Rubrobacter xylanophilus DSM 9941 4116038 YP_644148.1 CDS Rxyl_1373 NC_008148.1 1400610 1401104 D KEGG: ctc:CTC01234 phosphopantetheine adenylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein Cytidyltransferase-related; PFAM: cytidylyltransferase; phosphopantetheine adenylyltransferase 1400610..1401104 Rubrobacter xylanophilus DSM 9941 4116039 YP_644149.1 CDS Rxyl_1374 NC_008148.1 1401138 1401596 D KEGG: tte:TTE1485 archaeal/vacuolar-type H+-ATPase subunit H; ATPase subunit H 1401138..1401596 Rubrobacter xylanophilus DSM 9941 4116040 YP_644150.1 CDS Rxyl_1375 NC_008148.1 1401612 1402070 D hypothetical protein 1401612..1402070 Rubrobacter xylanophilus DSM 9941 4116041 YP_644151.1 CDS rpmF NC_008148.1 1402114 1402299 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1402114..1402299 Rubrobacter xylanophilus DSM 9941 4116042 YP_644152.1 CDS Rxyl_1377 NC_008148.1 1402328 1403338 D TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: ava:Ava_2728 fatty acid/phospholipid synthesis protein; phosphate:acyl-[acyl carrier protein] acyltransferase 1402328..1403338 Rubrobacter xylanophilus DSM 9941 4116043 YP_644153.1 CDS Rxyl_1378 NC_008148.1 1403335 1404282 D KEGG: btk:BT9727_1077 3-oxoacyl-[acyl-carrier-protein] synthase III protein 1; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-ACP synthase 1403335..1404282 Rubrobacter xylanophilus DSM 9941 4116044 YP_644154.1 CDS Rxyl_1379 NC_008148.1 1404315 1405136 D PFAM: acyl transferase region; KEGG: sru:SRU_0043 malonyl CoA-acyl carrier protein transacylase; acyl transferase domain-containing protein 1404315..1405136 Rubrobacter xylanophilus DSM 9941 4116045 YP_644155.1 CDS Rxyl_1380 NC_008148.1 1405133 1405585 D TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: bcz:BCZK4963 (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase 1405133..1405585 Rubrobacter xylanophilus DSM 9941 4116046 YP_644156.1 CDS Rxyl_1381 NC_008148.1 1405582 1406328 D TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gka:GK1190 3-ketoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-ACP reductase 1405582..1406328 Rubrobacter xylanophilus DSM 9941 4116047 YP_644157.1 CDS Rxyl_1382 NC_008148.1 1406405 1406650 D TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: tel:tsl1872 acyl carrier protein; acyl carrier protein 1406405..1406650 Rubrobacter xylanophilus DSM 9941 4116048 YP_644158.1 CDS Rxyl_1383 NC_008148.1 1406647 1407894 D PFAM: beta-ketoacyl synthase; KEGG: chy:CHY_1445 3-oxoacyl-(acyl-carrier-protein) synthase II; 3-oxoacyl-ACP synthase 1406647..1407894 Rubrobacter xylanophilus DSM 9941 4116049 YP_644159.1 CDS Rxyl_1384 NC_008148.1 1407869 1408570 D KEGG: neu:NE2324 ribonuclease III (RNAse III) protein; TIGRFAM: Ribonuclease III; PFAM: ribonuclease III double-stranded RNA binding; RNAse III 1407869..1408570 Rubrobacter xylanophilus DSM 9941 4116050 YP_644160.1 CDS Rxyl_1385 NC_008148.1 1408677 1411952 D PFAM: SMC protein-like; KEGG: sth:STH1455 putative chromosome segregation SMC protein; SMC protein-like protein 1408677..1411952 Rubrobacter xylanophilus DSM 9941 4116051 YP_644161.1 CDS Rxyl_1386 NC_008148.1 1411973 1413019 D KEGG: sth:STH1457 signal recognition particle; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G-domain; SMART: ATPase; signal recognition particle-docking protein FtsY 1411973..1413019 Rubrobacter xylanophilus DSM 9941 4116464 YP_644162.1 CDS Rxyl_1387 NC_008148.1 1413022 1414353 D KEGG: sth:STH1465 signal recognition particle; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G-domain Signal peptide binding (SRP54) M-domain; SMART: ATPase; signal recognition particle subunit FFH/SRP54 (srp54) 1413022..1414353 Rubrobacter xylanophilus DSM 9941 4116465 YP_644163.1 CDS Rxyl_1388 NC_008148.1 1414383 1414640 D PFAM: ribosomal protein S16; KEGG: gka:GK1197 30S ribosomal protein S16; 30S ribosomal protein S16 1414383..1414640 Rubrobacter xylanophilus DSM 9941 4116466 YP_644164.1 CDS Rxyl_1389 NC_008148.1 1414665 1414886 D KEGG: sth:STH1467 hypothetical protein; RNA-binding protein 1414665..1414886 Rubrobacter xylanophilus DSM 9941 4116467 YP_644165.1 CDS Rxyl_1390 NC_008148.1 1414894 1415385 D TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein PRC-barrel; KEGG: sth:STH1469 16S rRNA processing protein; 16S rRNA processing protein RimM 1414894..1415385 Rubrobacter xylanophilus DSM 9941 4116468 YP_644166.1 CDS Rxyl_1391 NC_008148.1 1415394 1416071 D KEGG: rpa:RPA0242 putative tRNA (guanine-N1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (Guanine37-N(1)-) methyltransferase 1415394..1416071 Rubrobacter xylanophilus DSM 9941 4116469 YP_644167.1 CDS rplS NC_008148.1 1416193 1416522 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1416193..1416522 Rubrobacter xylanophilus DSM 9941 4116470 YP_644168.1 CDS Rxyl_1393 NC_008148.1 1416531 1417145 D PFAM: ribonuclease HII/HIII; KEGG: mbo:Mb2926c probable ribonuclease HII protein RnhB (RNase HII); RNase HII 1416531..1417145 Rubrobacter xylanophilus DSM 9941 4116471 YP_644169.1 CDS Rxyl_1395 NC_008148.1 1417622 1419127 D KEGG: ttj:TTHA0201 Mg(2+) chelatase family protein; TIGRFAM: Mg chelatase-related protein; PFAM: magnesium chelatase, ChlI subunit; SMART: ATPase; Mg chelatase-like protein 1417622..1419127 Rubrobacter xylanophilus DSM 9941 4116472 YP_644170.1 CDS Rxyl_1396 NC_008148.1 1419111 1420217 D TIGRFAM: DNA processing protein DprA, putative; PFAM: SMF protein; KEGG: gme:Gmet_0890 smf protein; DNA processing protein DprA 1419111..1420217 Rubrobacter xylanophilus DSM 9941 4116473 YP_644171.1 CDS Rxyl_1397 NC_008148.1 1420214 1421008 D TIGRFAM: RNA polymerase sigma factor, FliA/WhiG; PFAM: sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: sco:SCO5621 RNA polymerase sigma factor WhiG; RNA polymerase sigma-28 subunit 1420214..1421008 Rubrobacter xylanophilus DSM 9941 4116474 YP_644172.1 CDS Rxyl_1398 NC_008148.1 1421168 1422088 D PFAM: ribosomal protein S2; KEGG: tfu:Tfu_0676 ribosomal protein S2, bacterial and organelle form; 30S ribosomal protein S2P 1421168..1422088 Rubrobacter xylanophilus DSM 9941 4116475 YP_644173.1 CDS Rxyl_1399 NC_008148.1 1422060 1422683 D TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated elongation factor Ts; KEGG: chy:CHY_1786 elongation factor Ts; translation elongation factor Ts (EF-Ts) 1422060..1422683 Rubrobacter xylanophilus DSM 9941 4116476 YP_644174.1 CDS Rxyl_1400 NC_008148.1 1422702 1423469 D TIGRFAM: Uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: gka:GK1251 uridylate kinase; uridylate kinase 1422702..1423469 Rubrobacter xylanophilus DSM 9941 4116477 YP_644175.1 CDS Rxyl_1401 NC_008148.1 1423494 1424054 D PFAM: ribosome recycling factor; KEGG: sth:STH1494 ribosome recycling factor; ribosome recycling factor 1423494..1424054 Rubrobacter xylanophilus DSM 9941 4116478 YP_644176.1 CDS Rxyl_1402 NC_008148.1 1424141 1424809 D KEGG: mta:Moth_1038 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl pyrophosphate synthetase 1424141..1424809 Rubrobacter xylanophilus DSM 9941 4116479 YP_644177.1 CDS Rxyl_1403 NC_008148.1 1424821 1425585 D PFAM: phosphatidate cytidylyltransferase; KEGG: mta:Moth_1039 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 1424821..1425585 Rubrobacter xylanophilus DSM 9941 4116480 YP_644178.1 CDS Rxyl_1404 NC_008148.1 1425582 1426715 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1425582..1426715 Rubrobacter xylanophilus DSM 9941 4116481 YP_644179.1 CDS Rxyl_1405 NC_008148.1 1426712 1427749 D TIGRFAM: Peptidase M50, putative membrane-associated zinc metallopeptidase; PFAM: PDZ/DHR/GLGF peptidase M50; KEGG: tte:TTE1401 predicted membrane-associated Zn-dependent protease 1; peptidase M50 membrane-associated zinc metallopeptidase 1426712..1427749 Rubrobacter xylanophilus DSM 9941 4116482 YP_644180.1 CDS Rxyl_1406 NC_008148.1 1427782 1428855 D KEGG: fnu:FN0478 gcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG protein; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1427782..1428855 Rubrobacter xylanophilus DSM 9941 4116483 YP_644181.1 CDS Rxyl_1407 NC_008148.1 1428933 1429526 D PFAM: cyclase/dehydrase; KEGG: eba:ebA2139 hypothetical protein; cyclase/dehydrase 1428933..1429526 Rubrobacter xylanophilus DSM 9941 4117263 YP_644182.1 CDS Rxyl_1408 NC_008148.1 1429523 1430476 R TIGRFAM: ribonuclease BN, putative; PFAM: ribonuclease BN; KEGG: pae:PA2751 hypothetical protein; ribonuclease BN complement(1429523..1430476) Rubrobacter xylanophilus DSM 9941 4117264 YP_644183.1 CDS Rxyl_1409 NC_008148.1 1430645 1431103 D PFAM: protein of unknown function DUF150; KEGG: mta:Moth_1046 protein of unknown function DUF150; hypothetical protein 1430645..1431103 Rubrobacter xylanophilus DSM 9941 4117265 YP_644184.1 CDS Rxyl_1410 NC_008148.1 1431100 1432245 D KEGG: chy:CHY_1769 transcription elongation factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 KH, type 2 KH, type 1 NusA-like; SMART: KH; NusA antitermination factor 1431100..1432245 Rubrobacter xylanophilus DSM 9941 4117266 YP_644185.1 CDS Rxyl_1411 NC_008148.1 1432238 1434307 D TIGRFAM: translation initiation factor IF-2 Small GTP-binding protein domain; PFAM: protein synthesis factor, GTP-binding GTP-binding protein, HSR1-related elongation factor Tu, domain 2 translation initiation factor IF-2-like; KEGG: tte:TTE1393 translation initiation factor IF-2; translation initiation factor 2 1432238..1434307 Rubrobacter xylanophilus DSM 9941 4117267 YP_644186.1 CDS Rxyl_1412 NC_008148.1 1434332 1434613 D PFAM: protein of unknown function DUF503; KEGG: chy:CHY_2676 hypothetical protein; hypothetical protein 1434332..1434613 Rubrobacter xylanophilus DSM 9941 4117268 YP_644187.1 CDS Rxyl_1413 NC_008148.1 1434610 1434978 D PFAM: ribosome-binding factor A; KEGG: gme:Gmet_1587 ribosome-binding factor A; ribosome-binding factor A 1434610..1434978 Rubrobacter xylanophilus DSM 9941 4117269 YP_644188.1 CDS Rxyl_1414 NC_008148.1 1434950 1435918 D PFAM: phosphoesterase, RecJ-like phosphoesterase, DHHA1; KEGG: tth:TTC1886 exopolyphosphatase family protein; phosphoesterase, RecJ-like protein 1434950..1435918 Rubrobacter xylanophilus DSM 9941 4117270 YP_644189.1 CDS Rxyl_1415 NC_008148.1 1435993 1436790 D KEGG: bpm:BURPS1710b_1917 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB-like; tRNA pseudouridine synthase B 1435993..1436790 Rubrobacter xylanophilus DSM 9941 4117271 YP_644190.1 CDS Rxyl_1416 NC_008148.1 1436778 1437677 D TIGRFAM: riboflavin biosynthesis protein RibF Cytidyltransferase-related; PFAM: Riboflavin kinase / FAD synthetase; KEGG: fra:Francci3_3557 riboflavin biosynthesis protein RibF; riboflavin kinase/FMN adenylyltransferase 1436778..1437677 Rubrobacter xylanophilus DSM 9941 4117272 YP_644191.1 CDS Rxyl_1417 NC_008148.1 1437761 1438027 D PFAM: ribosomal protein S15; KEGG: blo:BL1545a 30S ribosomal protein S15; 30S ribosomal protein S15 1437761..1438027 Rubrobacter xylanophilus DSM 9941 4117273 YP_644192.1 CDS Rxyl_1418 NC_008148.1 1438068 1440128 D KEGG: gka:GK1269 polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); PFAM: 3' exoribonuclease RNA binding S1 KH, type 1; SMART: KH; polynucleotide phosphorylase/polyadenylase 1438068..1440128 Rubrobacter xylanophilus DSM 9941 4117274 YP_644193.1 CDS Rxyl_1419 NC_008148.1 1440130 1441392 D PFAM: peptidase M16-like; KEGG: mta:Moth_1059 peptidase M16-like; peptidase M16-like protein 1440130..1441392 Rubrobacter xylanophilus DSM 9941 4117275 YP_644194.1 CDS Rxyl_1420 NC_008148.1 1441471 1443114 D TIGRFAM: conserved hypothetical protein; PFAM: beta-lactamase-like RNA-metabolising metallo-beta-lactamase; KEGG: sth:STH1556 Zn-dependent hydrolase beta-lactamase superfamily; hypothetical protein 1441471..1443114 Rubrobacter xylanophilus DSM 9941 4117276 YP_644195.1 CDS Rxyl_1421 NC_008148.1 1443181 1445391 D PFAM: cell divisionFtsK/SpoIIIE; SMART: ATPase; KEGG: tte:TTE1378 DNA segregation ATPase FtsK/SpoIIIE and related proteins; cell division protein FtsK 1443181..1445391 Rubrobacter xylanophilus DSM 9941 4117277 YP_644196.1 CDS Rxyl_1422 NC_008148.1 1445407 1446321 D KEGG: cya:CYA_0772 hypothetical protein; hypothetical protein 1445407..1446321 Rubrobacter xylanophilus DSM 9941 4117278 YP_644197.1 CDS Rxyl_1423 NC_008148.1 1446437 1447471 D KEGG: chy:CHY_1166 RecA protein; TIGRFAM: recA protein; PFAM: RecA; SMART: ATPase; recA protein 1446437..1447471 Rubrobacter xylanophilus DSM 9941 4117279 YP_644198.1 CDS Rxyl_1424 NC_008148.1 1447484 1448107 D PFAM: regulatory protein RecX; KEGG: sru:SRU_2134 regulatory protein RecX; regulatory protein RecX 1447484..1448107 Rubrobacter xylanophilus DSM 9941 4117280 YP_644199.1 CDS Rxyl_1425 NC_008148.1 1448171 1449715 D KEGG: chy:CHY_1168 HDIG/KH domain protein; TIGRFAM: uncharacterized domain HDIG; PFAM: KH, type 1 metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region KH; metal dependent phosphohydrolase 1448171..1449715 Rubrobacter xylanophilus DSM 9941 4117281 YP_644200.1 CDS Rxyl_1426 NC_008148.1 1449723 1450631 D hypothetical protein 1449723..1450631 Rubrobacter xylanophilus DSM 9941 4117224 YP_644201.1 CDS Rxyl_1427 NC_008148.1 1450618 1451955 D PFAM: protein of unknown function UPF0004 Radical SAM; SMART: Elongator protein 3/MiaB/NifB; KEGG: cjk:jk1114 2-methylthioadenine synthetase; tRNA-i(6)A37 thiotransferase MiaB 1450618..1451955 Rubrobacter xylanophilus DSM 9941 4117225 YP_644202.1 CDS Rxyl_1428 NC_008148.1 1451969 1452844 D PFAM: tRNA isopentenyltransferase; KEGG: tfu:Tfu_0815 tRNA delta(2)-isopentenylpyrophosphate transferase; tRNA isopentenyltransferase 1451969..1452844 Rubrobacter xylanophilus DSM 9941 4117226 YP_644203.1 CDS Rxyl_1429 NC_008148.1 1452841 1454139 D PFAM: GTP-binding protein, HSR1-related; KEGG: nfa:nfa38280 putative GTP-binding protein; HSR1-like GTP-binding protein 1452841..1454139 Rubrobacter xylanophilus DSM 9941 4117227 YP_644204.1 CDS Rxyl_1430 NC_008148.1 1454123 1454878 D PFAM: bifunctional deaminase-reductase-like; KEGG: mpa:MAP1425c hypothetical protein; bifunctional deaminase-reductase-like protein 1454123..1454878 Rubrobacter xylanophilus DSM 9941 4117228 YP_644205.1 CDS Rxyl_1431 NC_008148.1 1454913 1455842 R PFAM: phage integrase phage integrase-like SAM-like; KEGG: mca:MCA0396 tyrosine recombinase XerD; phage integrase complement(1454913..1455842) Rubrobacter xylanophilus DSM 9941 4117229 YP_644206.1 CDS Rxyl_1432 NC_008148.1 1455823 1456380 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(1455823..1456380) Rubrobacter xylanophilus DSM 9941 4117230 YP_644207.1 CDS Rxyl_1433 NC_008148.1 1456377 1457066 R PFAM: regulatory protein, MerR; KEGG: cjk:jk0904 putative transcriptional regulator (MerR family); MerR family transcriptional regulator complement(1456377..1457066) Rubrobacter xylanophilus DSM 9941 4117231 YP_644208.1 CDS Rxyl_1434 NC_008148.1 1457102 1457560 R PFAM: Forkhead-associated; KEGG: sco:SCO1384 hypothetical protein; FHA domain-containing protein complement(1457102..1457560) Rubrobacter xylanophilus DSM 9941 4117232 YP_644209.1 CDS Rxyl_1435 NC_008148.1 1457557 1457823 R KEGG: sco:SCO4184 aerial mycelium formation; aerial mycelium formation protein complement(1457557..1457823) Rubrobacter xylanophilus DSM 9941 4117233 YP_644210.1 CDS Rxyl_1436 NC_008148.1 1457865 1460366 R PFAM: transferase hexapeptide repeat Nucleotidyl transferase phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: fra:Francci3_1463 nucleotidyl transferase; nucleotidyl transferase complement(1457865..1460366) Rubrobacter xylanophilus DSM 9941 4117234 YP_644211.1 CDS Rxyl_1437 NC_008148.1 1460368 1460871 R PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pac:PPA1079 putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase; CDP-alcohol phosphatidyltransferase complement(1460368..1460871) Rubrobacter xylanophilus DSM 9941 4117235 YP_644212.1 CDS Rxyl_1438 NC_008148.1 1460882 1462195 R KEGG: tfu:Tfu_1210 small GTP-binding protein domain:GTP-binding; TIGRFAM: Small GTP-binding protein domain GTP-binding; PFAM: GTP-binding protein, HSR1-related; SMART: ATPase; small GTP-binding protein domain-containing protein complement(1460882..1462195) Rubrobacter xylanophilus DSM 9941 4117236 YP_644213.1 CDS Rxyl_1439 NC_008148.1 1462185 1462793 R PFAM: phospholipid/glycerol acyltransferase; KEGG: ttj:TTHA1348 1-acyl-sn-glycerol-3-phosphate acyltransferase; phospholipid/glycerol acyltransferase complement(1462185..1462793) Rubrobacter xylanophilus DSM 9941 4117237 YP_644214.1 CDS Rxyl_1440 NC_008148.1 1462795 1463469 R KEGG: ade:Adeh_1515 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; cytidylate kinase complement(1462795..1463469) Rubrobacter xylanophilus DSM 9941 4117238 YP_644215.1 CDS Rxyl_1441 NC_008148.1 1463496 1464839 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(1463496..1464839) Rubrobacter xylanophilus DSM 9941 4117239 YP_644216.1 CDS Rxyl_1442 NC_008148.1 1464836 1465546 R TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 pseudouridine synthase; KEGG: ttj:TTHA0219 ribosomal large subunit pseudouridine synthase B; ribosomal large subunit pseudouridine synthase B complement(1464836..1465546) Rubrobacter xylanophilus DSM 9941 4117240 YP_644217.1 CDS Rxyl_1443 NC_008148.1 1465543 1466100 R PFAM: chromosome segregation and condensation protein ScpB; KEGG: fra:Francci3_1453 putative transcriptional regulator; putative transcriptional regulator complement(1465543..1466100) Rubrobacter xylanophilus DSM 9941 4117241 YP_644218.1 CDS Rxyl_1444 NC_008148.1 1466097 1466804 R PFAM: chromosome segregation and condensation protein ScpA; KEGG: sru:SRU_1770 segregation and condensation protein A; condensin subunit ScpA complement(1466097..1466804) Rubrobacter xylanophilus DSM 9941 4117242 YP_644219.1 CDS Rxyl_1445 NC_008148.1 1466801 1467934 R TIGRFAM: alanine dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding alanine dehydrogenase/PNT-like; KEGG: mag:amb4487 alanine dehydrogenase; L-alanine dehydrogenase complement(1466801..1467934) Rubrobacter xylanophilus DSM 9941 4117243 YP_644220.1 CDS Rxyl_1446 NC_008148.1 1467931 1468944 R KEGG: tfu:Tfu_1772 hypothetical protein; hypothetical protein complement(1467931..1468944) Rubrobacter xylanophilus DSM 9941 4116795 YP_644221.1 CDS Rxyl_1447 NC_008148.1 1468948 1469469 R hypothetical protein complement(1468948..1469469) Rubrobacter xylanophilus DSM 9941 4116796 YP_644222.1 CDS pyrG NC_008148.1 1469471 1471126 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(1469471..1471126) Rubrobacter xylanophilus DSM 9941 4116797 YP_644223.1 CDS Rxyl_1449 NC_008148.1 1471128 1471904 R KEGG: tfu:Tfu_2028 hypothetical protein; hypothetical protein complement(1471128..1471904) Rubrobacter xylanophilus DSM 9941 4116798 YP_644224.1 CDS Rxyl_1450 NC_008148.1 1471898 1472596 R PFAM: glycosyl transferase, family 2; KEGG: tfu:Tfu_3054 glycosyltransferase involved in cell wall biogenesis; glycosyl transferase family protein complement(1471898..1472596) Rubrobacter xylanophilus DSM 9941 4116799 YP_644225.1 CDS Rxyl_1451 NC_008148.1 1472608 1473408 R KEGG: chy:CHY_1976 hypothetical protein; hypothetical protein complement(1472608..1473408) Rubrobacter xylanophilus DSM 9941 4116800 YP_644226.1 CDS Rxyl_1452 NC_008148.1 1473412 1474584 R PFAM: Thiamin pyrophosphokinase, catalytic region; KEGG: tte:TTE1305 hypothetical protein; thiamin pyrophosphokinase, catalytic region complement(1473412..1474584) Rubrobacter xylanophilus DSM 9941 4116801 YP_644227.1 CDS Rxyl_1453 NC_008148.1 1474581 1476254 R TIGRFAM: DNA repair protein RecN; PFAM: SMC protein-like; KEGG: mta:Moth_1507 DNA repair protein RecN; DNA repair protein RecN complement(1474581..1476254) Rubrobacter xylanophilus DSM 9941 4116802 YP_644228.1 CDS Rxyl_1454 NC_008148.1 1476254 1477075 R PFAM: ATP-NAD/AcoX kinase; KEGG: pca:Pcar_2327 ATP-NAD kinase; NAD(+) kinase complement(1476254..1477075) Rubrobacter xylanophilus DSM 9941 4116803 YP_644229.1 CDS Rxyl_1455 NC_008148.1 1477059 1477856 R TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ RNA-binding S4; KEGG: tfu:Tfu_2034 hemolysin A; hemolysin A complement(1477059..1477856) Rubrobacter xylanophilus DSM 9941 4116804 YP_644230.1 CDS Rxyl_1456 NC_008148.1 1477863 1478762 R PFAM: Polyprenyl synthetase; KEGG: pmi:PMT9312_1081 polyprenyl synthetase; farnesyl-diphosphate synthase complement(1477863..1478762) Rubrobacter xylanophilus DSM 9941 4116805 YP_644231.1 CDS Rxyl_1457 NC_008148.1 1478746 1479165 R TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: sth:STH1849 transcription termination factor; NusB antitermination factor complement(1478746..1479165) Rubrobacter xylanophilus DSM 9941 4116806 YP_644232.1 CDS Rxyl_1458 NC_008148.1 1479167 1479724 R TIGRFAM: translation elongation factor P; PFAM: elongation factor P/YeiP Elongation factor, KOW-like; KEGG: tte:TTE1281 translation initiation factor eIF-5A; translation elongation factor P (EF-P) complement(1479167..1479724) Rubrobacter xylanophilus DSM 9941 4116807 YP_644233.1 CDS Rxyl_1459 NC_008148.1 1479847 1480905 R PFAM: 3-dehydroquinate synthase; KEGG: sth:STH1948 3-dehydroquinate synthase; 3-dehydroquinate synthase complement(1479847..1480905) Rubrobacter xylanophilus DSM 9941 4116808 YP_644234.1 CDS Rxyl_1460 NC_008148.1 1480908 1481414 R PFAM: shikimate kinase; KEGG: det:DET0464 shikimate kinase; shikimate kinase complement(1480908..1481414) Rubrobacter xylanophilus DSM 9941 4116809 YP_644235.1 CDS Rxyl_1461 NC_008148.1 1481428 1482597 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(1481428..1482597) Rubrobacter xylanophilus DSM 9941 4116810 YP_644236.1 CDS Rxyl_1462 NC_008148.1 1482631 1483158 R hypothetical protein complement(1482631..1483158) Rubrobacter xylanophilus DSM 9941 4116811 YP_644237.1 CDS Rxyl_1463 NC_008148.1 1483148 1483768 R KEGG: gme:Gmet_0973 pilus assembly protein, PilO; Tfp pilus assembly protein PilO-like protein complement(1483148..1483768) Rubrobacter xylanophilus DSM 9941 4116812 YP_644238.1 CDS Rxyl_1464 NC_008148.1 1483769 1484446 R PFAM: Fimbrial assembly; fimbrial assembly complement(1483769..1484446) Rubrobacter xylanophilus DSM 9941 4116813 YP_644239.1 CDS Rxyl_1465 NC_008148.1 1484443 1485582 R TIGRFAM: type IV pilus assembly protein PilM; KEGG: tth:TTC1013 pilus-associated protein pilM; type IV pilus assembly protein PilM complement(1484443..1485582) Rubrobacter xylanophilus DSM 9941 4116131 YP_644240.1 CDS Rxyl_1466 NC_008148.1 1485611 1486321 R KEGG: reu:Reut_A1128 transferase hexapeptide repeat; hypothetical protein complement(1485611..1486321) Rubrobacter xylanophilus DSM 9941 4116132 YP_644241.1 CDS Rxyl_1467 NC_008148.1 1486382 1487302 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase-like; KEGG: gsu:GSU0130 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(1486382..1487302) Rubrobacter xylanophilus DSM 9941 4116133 YP_644242.1 CDS Rxyl_1468 NC_008148.1 1487314 1487808 R PFAM: formylmethionine deformylase; KEGG: cef:CE1720 putative polypeptide deformylase; peptide deformylase complement(1487314..1487808) Rubrobacter xylanophilus DSM 9941 4116134 YP_644243.1 CDS Rxyl_1469 NC_008148.1 1487812 1489998 R TIGRFAM: primosomal protein N'; KEGG: pca:Pcar_0764 primosomal protein n'; primosomal protein N' complement(1487812..1489998) Rubrobacter xylanophilus DSM 9941 4116135 YP_644244.1 CDS Rxyl_1470 NC_008148.1 1490006 1491244 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(1490006..1491244) Rubrobacter xylanophilus DSM 9941 4116136 YP_644245.1 CDS Rxyl_1471 NC_008148.1 1491198 1492334 R TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein-like; KEGG: mta:Moth_0893 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase complement(1491198..1492334) Rubrobacter xylanophilus DSM 9941 4116137 YP_644246.1 CDS Rxyl_1472 NC_008148.1 1492331 1492651 R TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: tfu:Tfu_1063 RNA polymerase, omega subunit; DNA-directed RNA polymerase subunit omega complement(1492331..1492651) Rubrobacter xylanophilus DSM 9941 4116138 YP_644247.1 CDS Rxyl_1473 NC_008148.1 1492645 1493220 R KEGG: ava:Ava_1475 guanylate kinase; PFAM: guanylate kinase; SMART: Guanylate kinase/L-type calcium channel region; guanylate kinase complement(1492645..1493220) Rubrobacter xylanophilus DSM 9941 4116139 YP_644248.1 CDS Rxyl_1474 NC_008148.1 1493202 1493528 R KEGG: cef:CE1727 hypothetical protein; hypothetical protein complement(1493202..1493528) Rubrobacter xylanophilus DSM 9941 4116140 YP_644249.1 CDS Rxyl_1475 NC_008148.1 1493544 1494458 R TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: gme:Gmet_1841 dihydroorotate dehydrogenase 1; dihydroorotate oxidase B, catalytic subunit complement(1493544..1494458) Rubrobacter xylanophilus DSM 9941 4116141 YP_644250.1 CDS Rxyl_1476 NC_008148.1 1494452 1495177 R PFAM: oxidoreductase FAD/NAD(P)-binding; KEGG: tte:TTE1531 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; dihydroorotate oxidase B, electron transfer subunit complement(1494452..1495177) Rubrobacter xylanophilus DSM 9941 4116142 YP_644251.1 CDS Rxyl_1477 NC_008148.1 1495174 1498338 R TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase-like, ATP-grasp protein of unknown function DUF201 Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain, oligomerisation Carbamoyl-phosphate synthetase large chain-like MGS-like; KEGG: afu:AF1274 carbamoyl-phosphate synthase large chain; carbamoyl-phosphate synthase large subunit complement(1495174..1498338) Rubrobacter xylanophilus DSM 9941 4116143 YP_644252.1 CDS Rxyl_1478 NC_008148.1 1498347 1499456 R TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I Carbamoyl-phosphate synthase, small chain; KEGG: plt:Plut_0156 carbamoyl-phosphate synthase small subunit; carbamoyl-phosphate synthase small subunit complement(1498347..1499456) Rubrobacter xylanophilus DSM 9941 4116144 YP_644253.1 CDS Rxyl_1479 NC_008148.1 1499440 1500750 R TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; KEGG: sth:STH1258 dihydroorotase; dihydroorotase complement(1499440..1500750) Rubrobacter xylanophilus DSM 9941 4116145 YP_644254.1 CDS Rxyl_1480 NC_008148.1 1500747 1501664 R TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: ccr:CC2443 aspartate carbamoyltransferase; aspartate carbamoyltransferase complement(1500747..1501664) Rubrobacter xylanophilus DSM 9941 4116146 YP_644255.1 CDS Rxyl_1481 NC_008148.1 1501654 1502208 R PFAM: phosphoribosyltransferase; KEGG: deh:cbdb_A1112 pyrimidine operon regulatory protein; uracil phosphoribosyltransferase complement(1501654..1502208) Rubrobacter xylanophilus DSM 9941 4116147 YP_644256.1 CDS Rxyl_1482 NC_008148.1 1502280 1503197 R TIGRFAM: Pseudouridine synthase, RluD; PFAM: RNA-binding S4 pseudouridine synthase; KEGG: nar:Saro_3046 pseudouridine synthase, RluD; ribosomal large subunit pseudouridine synthase D complement(1502280..1503197) Rubrobacter xylanophilus DSM 9941 4116148 YP_644257.1 CDS Rxyl_1483 NC_008148.1 1503216 1504088 R PFAM: DivIVA; KEGG: sth:STH1230 cell-division initiation protein; hypothetical protein complement(1503216..1504088) Rubrobacter xylanophilus DSM 9941 4116149 YP_644258.1 CDS Rxyl_1484 NC_008148.1 1504093 1504437 R PFAM: protein of unknown function YGGT; KEGG: mta:Moth_0861 protein of unknown function YGGT; hypothetical protein complement(1504093..1504437) Rubrobacter xylanophilus DSM 9941 4116150 YP_644259.1 CDS Rxyl_1485 NC_008148.1 1504434 1505222 R KEGG: syn:slr0661 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent 6-phosphogluconate dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like Ketopantoate reductase ApbA/PanE-like; pyrroline-5-carboxylate reductase complement(1504434..1505222) Rubrobacter xylanophilus DSM 9941 4117009 YP_644260.1 CDS Rxyl_1486 NC_008148.1 1505219 1505779 R PFAM: protein of unknown function DUF552; KEGG: tfu:Tfu_1116 hypothetical protein; hypothetical protein complement(1505219..1505779) Rubrobacter xylanophilus DSM 9941 4117010 YP_644261.1 CDS Rxyl_1487 NC_008148.1 1505769 1506491 R TIGRFAM: Protein of unknown function UPF0001; PFAM: alanine racemase-like; KEGG: bha:BH2550 hypothetical protein; hypothetical protein complement(1505769..1506491) Rubrobacter xylanophilus DSM 9941 4117011 YP_644262.1 CDS Rxyl_1488 NC_008148.1 1506488 1507252 R PFAM: protein of unknown function DUF152; KEGG: ade:Adeh_2703 protein of unknown function DUF152; hypothetical protein complement(1506488..1507252) Rubrobacter xylanophilus DSM 9941 4117012 YP_644263.1 CDS Rxyl_1489 NC_008148.1 1507281 1508357 R TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase Tubulin/FtsZ-like; KEGG: mta:Moth_0850 cell division protein FtsZ; cell division protein FtsZ complement(1507281..1508357) Rubrobacter xylanophilus DSM 9941 4117013 YP_644264.1 CDS Rxyl_1490 NC_008148.1 1508414 1509619 R PFAM: cell division protein FtsA; KEGG: tbd:Tbd_0124 cell division protein FtsA; cell division protein FtsA complement(1508414..1509619) Rubrobacter xylanophilus DSM 9941 4117014 YP_644265.1 CDS Rxyl_1491 NC_008148.1 1509630 1510310 R PFAM: Polypeptide-transport-associated, FtsQ-type; cell division protein FtsQ complement(1509630..1510310) Rubrobacter xylanophilus DSM 9941 4117015 YP_644266.1 CDS Rxyl_1492 NC_008148.1 1510307 1511650 R TIGRFAM: UDP-N-acetylmuramate--alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase-like cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: gsu:GSU3068 UDP-N-acetylmuramate--alanine ligase; UDP-N-acetylmuramate--L-alanine ligase complement(1510307..1511650) Rubrobacter xylanophilus DSM 9941 4117016 YP_644267.1 CDS Rxyl_1493 NC_008148.1 1511647 1512657 R KEGG: mca:MCA2429 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase, family 28 glycosyltransferase 28-like; UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase complement(1511647..1512657) Rubrobacter xylanophilus DSM 9941 4117017 YP_644268.1 CDS Rxyl_1494 NC_008148.1 1512650 1513798 R PFAM: cell cycle protein; KEGG: btk:BT9727_3653 stage V sporulation protein E; cell cycle protein complement(1512650..1513798) Rubrobacter xylanophilus DSM 9941 4117018 YP_644269.1 CDS Rxyl_1495 NC_008148.1 1513795 1515117 R TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: mta:Moth_0841 UDP-N-acetylmuramoylalanine--D-glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase complement(1513795..1515117) Rubrobacter xylanophilus DSM 9941 4117019 YP_644270.1 CDS Rxyl_1496 NC_008148.1 1515114 1516106 R KEGG: gka:GK1117 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase, family 4; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(1515114..1516106) Rubrobacter xylanophilus DSM 9941 4117020 YP_644271.1 CDS Rxyl_1497 NC_008148.1 1516099 1517463 R TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase-like cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: sma:SAV6118 putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2 ,6-diaminopimelate-D-alanyl-D-alanine ligase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(1516099..1517463) Rubrobacter xylanophilus DSM 9941 4117021 YP_644272.1 CDS Rxyl_1498 NC_008148.1 1517460 1519130 R PFAM: penicillin-binding protein, transpeptidase Penicillin-binding protein, dimerisation domain; KEGG: tfu:Tfu_1104 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase complement(1517460..1519130) Rubrobacter xylanophilus DSM 9941 4117022 YP_644273.1 CDS Rxyl_1499 NC_008148.1 1519156 1519572 R hypothetical protein complement(1519156..1519572) Rubrobacter xylanophilus DSM 9941 4117023 YP_644274.1 CDS Rxyl_1500 NC_008148.1 1519574 1520512 R PFAM: methyltransferase; KEGG: sth:STH1201 putative S-adenosylmethionine-dependent methyltransferase; methyltransferase complement(1519574..1520512) Rubrobacter xylanophilus DSM 9941 4117024 YP_644275.1 CDS Rxyl_1501 NC_008148.1 1520512 1520967 R PFAM: protein of unknown function UPF0040; KEGG: sha:SH1737 protein MraZ protein; hypothetical protein complement(1520512..1520967) Rubrobacter xylanophilus DSM 9941 4117025 YP_644276.1 CDS Rxyl_1502 NC_008148.1 1521426 1523177 R KEGG: mta:Moth_0623 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-type TOPRIM DNA primase catalytic core-like; SMART: Toprim subdomain; DNA primase complement(1521426..1523177) Rubrobacter xylanophilus DSM 9941 4117026 YP_644277.1 CDS Rxyl_1503 NC_008148.1 1523189 1524145 R dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(1523189..1524145) Rubrobacter xylanophilus DSM 9941 4117027 YP_644278.1 CDS Rxyl_1504 NC_008148.1 1524142 1524888 R TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: nfa:nfa14520 putative DNA repair protein; DNA repair protein RecO complement(1524142..1524888) Rubrobacter xylanophilus DSM 9941 4117048 YP_644279.1 CDS Rxyl_1505 NC_008148.1 1524869 1525576 R KEGG: tte:TTE0975 Deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; deoxyribose-phosphate aldolase complement(1524869..1525576) Rubrobacter xylanophilus DSM 9941 4117049 YP_644280.1 CDS Rxyl_1506 NC_008148.1 1525620 1526525 R TIGRFAM: Small GTP-binding protein domain GTP-binding GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related KH, type 2; KEGG: sth:STH534 Era family GTP-binding protein; GTP-binding protein Era complement(1525620..1526525) Rubrobacter xylanophilus DSM 9941 4117050 YP_644281.1 CDS Rxyl_1507 NC_008148.1 1526525 1526929 R TIGRFAM: Cytidine deaminase, homotetrameric; PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: sth:STH533 cytidine deaminase; cytidine deaminase complement(1526525..1526929) Rubrobacter xylanophilus DSM 9941 4117051 YP_644282.1 CDS Rxyl_1508 NC_008148.1 1526941 1527684 R PFAM: phosphoesterase, PA-phosphatase related diacylglycerol kinase; KEGG: tte:TTE0973 Diacylglycerol kinase; diacylglycerol kinase complement(1526941..1527684) Rubrobacter xylanophilus DSM 9941 4117052 YP_644283.1 CDS Rxyl_1509 NC_008148.1 1527674 1528081 R PFAM: protein of unknown function UPF0054; KEGG: pmu:PM1045 hypothetical HI0004; hypothetical protein complement(1527674..1528081) Rubrobacter xylanophilus DSM 9941 4117053 YP_644284.1 CDS Rxyl_1510 NC_008148.1 1528091 1530313 R KEGG: mta:Moth_0594 metal dependent phosphohydrolase; TIGRFAM: uncharacterized domain HDIG; PFAM: metal-dependent phosphohydrolase, HD subdomain metal-dependent phosphohydrolase, 7TM intracellular region metal-dependent phosphohydrolase, 7TM extracellular region; SMART: Metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase complement(1528091..1530313) Rubrobacter xylanophilus DSM 9941 4117054 YP_644285.1 CDS Rxyl_1511 NC_008148.1 1530335 1531246 R PFAM: PhoH-like protein; KEGG: sth:STH529 phosphate starvation-induced protein; PhoH-like protein complement(1530335..1531246) Rubrobacter xylanophilus DSM 9941 4117055 YP_644286.1 CDS Rxyl_1512 NC_008148.1 1531322 1531765 R PFAM: GatB/Yqey; KEGG: gka:GK2496 hypothetical protein; hypothetical protein complement(1531322..1531765) Rubrobacter xylanophilus DSM 9941 4117056 YP_644287.1 CDS Rxyl_1513 NC_008148.1 1531762 1532490 R PFAM: protein of unknown function DUF558; KEGG: ade:Adeh_0247 hypothetical protein; hypothetical protein complement(1531762..1532490) Rubrobacter xylanophilus DSM 9941 4117057 YP_644288.1 CDS Rxyl_1514 NC_008148.1 1532515 1533642 R TIGRFAM: Chaperone DnaJ; PFAM: DnaJ central region heat shock protein DnaJ-like chaperone DnaJ-like; KEGG: sth:STH505 heat shock protein, DnaJ; chaperone DnaJ complement(1532515..1533642) Rubrobacter xylanophilus DSM 9941 4117058 YP_644289.1 CDS Rxyl_1515 NC_008148.1 1533648 1534676 R TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: gka:GK2506 transcriptional repressor of class I heat shock genes; heat-inducible transcription repressor HrcA complement(1533648..1534676) Rubrobacter xylanophilus DSM 9941 4117059 YP_644290.1 CDS Rxyl_1516 NC_008148.1 1534710 1536512 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1534710..1536512) Rubrobacter xylanophilus DSM 9941 4117060 YP_644291.1 CDS Rxyl_1517 NC_008148.1 1536594 1536848 D PFAM: ribosomal protein S20; KEGG: ade:Adeh_2725 ribosomal protein S20; 30S ribosomal protein S20 1536594..1536848 Rubrobacter xylanophilus DSM 9941 4117061 YP_644292.1 CDS Rxyl_1518 NC_008148.1 1536858 1537778 R TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: bld:BLi02748 similar to proteins; RBL00675; DNA polymerase III subunit delta complement(1536858..1537778) Rubrobacter xylanophilus DSM 9941 4117062 YP_644293.1 CDS Rxyl_1519 NC_008148.1 1537794 1539389 R PFAM: ComEC/Rec2-related protein; KEGG: sth:STH473 ComE-like competence protein; ComEC/Rec2-like protein complement(1537794..1539389) Rubrobacter xylanophilus DSM 9941 4117063 YP_644294.1 CDS Rxyl_1520 NC_008148.1 1539376 1539699 R KEGG: chy:CHY_0402 competence protein; TIGRFAM: Competence protein ComEA helix-hairpin-helix region; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1; competence protein ComEA helix-hairpin-helix region complement(1539376..1539699) Rubrobacter xylanophilus DSM 9941 4117064 YP_644295.1 CDS Rxyl_1521 NC_008148.1 1539947 1540342 R PFAM: Iojap-related protein; KEGG: mpa:MAP2243c hypothetical protein; Iojap-like protein complement(1539947..1540342) Rubrobacter xylanophilus DSM 9941 4117065 YP_644296.1 CDS Rxyl_1522 NC_008148.1 1540339 1540983 R KEGG: mta:Moth_0564 nicotinate-nucleotide adenylyltransferase-like; TIGRFAM: Cytidyltransferase-related Probable nicotinate-nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate-nucleotide adenylyltransferase complement(1540339..1540983) Rubrobacter xylanophilus DSM 9941 4117066 YP_644297.1 CDS obgE NC_008148.1 1540993 1542228 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(1540993..1542228) Rubrobacter xylanophilus DSM 9941 4117067 YP_644298.1 CDS rpmA NC_008148.1 1542260 1542520 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(1542260..1542520) Rubrobacter xylanophilus DSM 9941 4116388 YP_644299.1 CDS Rxyl_1525 NC_008148.1 1542526 1542813 R PFAM: ribosomal protein L21; KEGG: aae:aq_1641a 50S ribosomal protein L21; 50S ribosomal protein L21 complement(1542526..1542813) Rubrobacter xylanophilus DSM 9941 4116389 YP_644300.1 CDS Rxyl_1526 NC_008148.1 1542921 1544060 R PFAM: cell cycle protein; KEGG: tte:TTE0905 Bacterial cell division membrane protein; cell cycle protein complement(1542921..1544060) Rubrobacter xylanophilus DSM 9941 4116390 YP_644301.1 CDS Rxyl_1527 NC_008148.1 1544057 1544578 R hypothetical protein complement(1544057..1544578) Rubrobacter xylanophilus DSM 9941 4116391 YP_644302.1 CDS Rxyl_1528 NC_008148.1 1544608 1545528 R PFAM: Rod shape-determining protein MreC; KEGG: ctc:CTC02073 rod shape-determining protein mreC; rod shape-determining protein MreC complement(1544608..1545528) Rubrobacter xylanophilus DSM 9941 4116392 YP_644303.1 CDS Rxyl_1529 NC_008148.1 1545532 1546560 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(1545532..1546560) Rubrobacter xylanophilus DSM 9941 4116393 YP_644304.1 CDS Rxyl_1530 NC_008148.1 1546603 1547286 R PFAM: DNA repair protein RadC; KEGG: mta:Moth_0536 DNA repair protein RadC; DNA repair protein RadC complement(1546603..1547286) Rubrobacter xylanophilus DSM 9941 4116394 YP_644305.1 CDS Rxyl_1531 NC_008148.1 1547311 1547883 R TIGRFAM: maf protein; PFAM: Maf-like protein; KEGG: sth:STH370 septum formation protein Maf; maf protein complement(1547311..1547883) Rubrobacter xylanophilus DSM 9941 4116395 YP_644306.1 CDS Rxyl_1532 NC_008148.1 1547888 1548289 R PFAM: nucleoside diphosphate kinase; KEGG: afu:AF0767 nucleoside diphosphate kinase (ndk); nucleoside diphosphate kinase complement(1547888..1548289) Rubrobacter xylanophilus DSM 9941 4116396 YP_644307.1 CDS Rxyl_1533 NC_008148.1 1548324 1548821 R KEGG: ctc:CTC00666 hypothetical protein; hypothetical protein complement(1548324..1548821) Rubrobacter xylanophilus DSM 9941 4116397 YP_644308.1 CDS Rxyl_1534 NC_008148.1 1548909 1550138 R KEGG: ttj:TTHA0343 folyl-polyglutamate synthetase; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase complement(1548909..1550138) Rubrobacter xylanophilus DSM 9941 4116398 YP_644309.1 CDS Rxyl_1535 NC_008148.1 1550139 1552700 R TIGRFAM: valyl-tRNA synthetase; KEGG: chy:CHY_0334 valyl-tRNA synthetase; valyl-tRNA synthetase complement(1550139..1552700) Rubrobacter xylanophilus DSM 9941 4116399 YP_644310.1 CDS clpX NC_008148.1 1552716 1553978 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(1552716..1553978) Rubrobacter xylanophilus DSM 9941 4116400 YP_644311.1 CDS Rxyl_1537 NC_008148.1 1554007 1554609 R KEGG: ade:Adeh_3353 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14, ClpP; ATP-dependent Clp protease proteolytic subunit ClpP complement(1554007..1554609) Rubrobacter xylanophilus DSM 9941 4116401 YP_644312.1 CDS Rxyl_1538 NC_008148.1 1554606 1556042 R TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase, FKBP-type trigger factor-like; KEGG: mta:Moth_0527 trigger factor; trigger factor complement(1554606..1556042) Rubrobacter xylanophilus DSM 9941 4116402 YP_644313.1 CDS Rxyl_1539 NC_008148.1 1556244 1558232 R PFAM: TrkA-N TrkA-C sodium/hydrogen exchanger; KEGG: dps:DP1776 related to potassium efflux transporter; sodium/hydrogen exchanger complement(1556244..1558232) Rubrobacter xylanophilus DSM 9941 4116403 YP_644314.1 CDS Rxyl_1540 NC_008148.1 1558282 1559268 R TIGRFAM: cell envelope-related function transcriptional attenuator common domain; PFAM: cell envelope-related transcriptional attenuator; KEGG: sth:STH1893 transcriptional regulator; cell envelope-related transcriptional attenuator complement(1558282..1559268) Rubrobacter xylanophilus DSM 9941 4116404 YP_644315.1 CDS Rxyl_1541 NC_008148.1 1559285 1560760 R PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS02171 probable transport transmembrane protein; major facilitator transporter complement(1559285..1560760) Rubrobacter xylanophilus DSM 9941 4116405 YP_644316.1 CDS Rxyl_1542 NC_008148.1 1560788 1562416 R PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: bpm:BURPS1710b_1048 benzoylformate decarboxylase; thiamine pyrophosphate enzyme-like TPP binding region complement(1560788..1562416) Rubrobacter xylanophilus DSM 9941 4116406 YP_644317.1 CDS Rxyl_1543 NC_008148.1 1562635 1563165 D PFAM: Cupin 2, conserved barrel; KEGG: pae:PA4095 hypothetical protein; cupin 2 barrel domain-containing protein 1562635..1563165 Rubrobacter xylanophilus DSM 9941 4116873 YP_644318.1 CDS Rxyl_1544 NC_008148.1 1563169 1565457 R TIGRFAM: GGDEF domain; PFAM: GGDEF EAL; KEGG: tel:tll0627 hypothetical protein; diguanylate cyclase/phosphodiesterase complement(1563169..1565457) Rubrobacter xylanophilus DSM 9941 4116874 YP_644319.1 CDS Rxyl_1545 NC_008148.1 1565583 1566362 R PFAM: inositol monophosphatase; KEGG: ade:Adeh_3387 inositol-1(or 4)-monophosphatase; inositol-1(or 4)-monophosphatase complement(1565583..1566362) Rubrobacter xylanophilus DSM 9941 4116875 YP_644320.1 CDS Rxyl_1546 NC_008148.1 1566515 1566745 R hypothetical protein complement(1566515..1566745) Rubrobacter xylanophilus DSM 9941 4116876 YP_644321.1 CDS Rxyl_1547 NC_008148.1 1566892 1567440 R KEGG: aci:ACIAD0959 hypothetical protein; hypothetical protein complement(1566892..1567440) Rubrobacter xylanophilus DSM 9941 4116877 YP_644322.1 CDS Rxyl_1548 NC_008148.1 1567703 1568803 R PFAM: ABC-2 type transporter; KEGG: deh:cbdb_A774 ABC transporter, permease protein; ABC transporter complement(1567703..1568803) Rubrobacter xylanophilus DSM 9941 4116878 YP_644323.1 CDS Rxyl_1549 NC_008148.1 1568803 1569762 R PFAM: ABC transporter related; SMART: ATPase; KEGG: det:DET0794 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(1568803..1569762) Rubrobacter xylanophilus DSM 9941 4116879 YP_644324.1 CDS Rxyl_1550 NC_008148.1 1569923 1570585 R PFAM: regulatory protein, LuxR response regulator receiver; KEGG: sth:STH649 two-component response regulator; two component LuxR family transcriptional regulator complement(1569923..1570585) Rubrobacter xylanophilus DSM 9941 4116880 YP_644325.1 CDS Rxyl_1551 NC_008148.1 1570582 1571805 R PFAM: ATP-binding region, ATPase-like histidine kinase, dimerisation and phosphoacceptor region; KEGG: sco:SCO1071 two component system sensor kinase; sensor signal transduction histidine kinase complement(1570582..1571805) Rubrobacter xylanophilus DSM 9941 4116881 YP_644326.1 CDS Rxyl_1552 NC_008148.1 1572260 1572511 D hypothetical protein 1572260..1572511 Rubrobacter xylanophilus DSM 9941 4116882 YP_644327.1 CDS Rxyl_1553 NC_008148.1 1572492 1573409 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: gvi:glr3360 LysR family transcriptional regulatory protein; LysR family transcriptional regulator complement(1572492..1573409) Rubrobacter xylanophilus DSM 9941 4116883 YP_644328.1 CDS Rxyl_1554 NC_008148.1 1573634 1574389 D KEGG: mlo:mlr3415 hypothetical protein; hypothetical protein 1573634..1574389 Rubrobacter xylanophilus DSM 9941 4116884 YP_644329.1 CDS Rxyl_1555 NC_008148.1 1574405 1575652 D KEGG: lin:lin1013 highly similar to glycine betaine ABC transporter (ATP-binding protein); TIGRFAM: glycine betaine/L-proline transport ATP binding subunit; PFAM: CBS ABC transporter related; SMART: ATPase; glycine betaine/L-proline transport ATP binding subunit 1574405..1575652 Rubrobacter xylanophilus DSM 9941 4116885 YP_644330.1 CDS Rxyl_1556 NC_008148.1 1575709 1576575 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bth:BT1750 glycine betaine/L-proline transport system permease; binding-protein-dependent transport system inner membrane protein 1575709..1576575 Rubrobacter xylanophilus DSM 9941 4116886 YP_644331.1 CDS Rxyl_1557 NC_008148.1 1576627 1577568 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bur:Bcep18194_B0580 ABC proline/glycine betaine transporter, periplasmic ligand binding protein; twin-arginine translocation pathway signal protein 1576627..1577568 Rubrobacter xylanophilus DSM 9941 4116887 YP_644332.1 CDS Rxyl_1558 NC_008148.1 1577597 1578781 D PFAM: FAD dependent oxidoreductase; KEGG: sma:SAV6950 putative sarcosine oxidase; sarcosine oxidase 1577597..1578781 Rubrobacter xylanophilus DSM 9941 4116888 YP_644333.1 CDS Rxyl_1559 NC_008148.1 1578809 1580119 D PFAM: peptidase M24; KEGG: mlo:mlr1214 proline dipeptidase; peptidase M24 1578809..1580119 Rubrobacter xylanophilus DSM 9941 4116889 YP_644334.1 CDS Rxyl_1560 NC_008148.1 1580231 1581535 D PFAM: Rieske [2Fe-2S] region; KEGG: pub:SAR11_1263 probable dioxygenase alpha chain; Rieske (2Fe-2S) domain-containing protein 1580231..1581535 Rubrobacter xylanophilus DSM 9941 4116890 YP_644335.1 CDS Rxyl_1561 NC_008148.1 1581544 1583055 D PFAM: aldehyde dehydrogenase; KEGG: bte:BTH_I0877 aldehyde dehydrogenase family protein; aldehyde dehydrogenase (acceptor) 1581544..1583055 Rubrobacter xylanophilus DSM 9941 4116891 YP_644336.1 CDS Rxyl_1562 NC_008148.1 1583290 1584336 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: sme:SMb20422 putative oxidoreductase protein; zinc-binding alcohol dehydrogenase 1583290..1584336 Rubrobacter xylanophilus DSM 9941 4116892 YP_644337.1 CDS Rxyl_1563 NC_008148.1 1584766 1585977 R PFAM: major facilitator superfamily MFS_1; KEGG: bcl:ABC0476 cyanate transporter; major facilitator transporter complement(1584766..1585977) Rubrobacter xylanophilus DSM 9941 4116445 YP_644338.1 CDS Rxyl_1564 NC_008148.1 1585997 1587172 R catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase complement(1585997..1587172) Rubrobacter xylanophilus DSM 9941 4116446 YP_644339.1 CDS Rxyl_1565 NC_008148.1 1587349 1588722 R PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: nar:Saro_2861 vanillate/3-O-methylgallate O-demethylase; aminomethyltransferase complement(1587349..1588722) Rubrobacter xylanophilus DSM 9941 4116447 YP_644340.1 CDS Rxyl_1566 NC_008148.1 1588823 1589785 R PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: gme:Gmet_1162 tetrahydrofolate dehydrogenase/cyclohydrolase; methylenetetrahydrofolate dehydrogenase (NADP+) complement(1588823..1589785) Rubrobacter xylanophilus DSM 9941 4116448 YP_644341.1 CDS Rxyl_1567 NC_008148.1 1589795 1590376 R PFAM: Formiminotransferase-cyclodeaminase; KEGG: mca:MCA0507 methenyltetrahydrofolate cyclohydrolase; formiminotransferase-cyclodeaminase complement(1589795..1590376) Rubrobacter xylanophilus DSM 9941 4116449 YP_644342.1 CDS Rxyl_1568 NC_008148.1 1590373 1592103 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(1590373..1592103) Rubrobacter xylanophilus DSM 9941 4116450 YP_644343.1 CDS Rxyl_1569 NC_008148.1 1592303 1594297 R AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase complement(1592303..1594297) Rubrobacter xylanophilus DSM 9941 4116451 YP_644344.1 CDS Rxyl_1570 NC_008148.1 1594297 1595112 R TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: nar:Saro_1858 haloacid dehalogenase-like hydrolase; HAD family hydrolase complement(1594297..1595112) Rubrobacter xylanophilus DSM 9941 4116452 YP_644345.1 CDS Rxyl_1571 NC_008148.1 1595090 1596568 R PFAM: pyruvate carboxyltransferase Conserved carboxylase region; KEGG: eba:ebA314 putative carboxylase subunit of acetyl-CoA carboxylase-like enzyme; hypothetical protein complement(1595090..1596568) Rubrobacter xylanophilus DSM 9941 4116453 YP_644346.1 CDS Rxyl_1572 NC_008148.1 1596565 1597911 R PFAM: ATP-dependent carboxylate-amine ligase-like, ATP-grasp Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain-like biotin carboxylase-like; KEGG: eba:ebA316 biotin carboxylase subunit of acetyl-CoA carboxylase-like enzyme; carbamoyl-phosphate synthase L chain, ATP-binding protein complement(1596565..1597911) Rubrobacter xylanophilus DSM 9941 4116454 YP_644347.1 CDS Rxyl_1573 NC_008148.1 1597911 1598396 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment; KEGG: bha:BH2788 acetyl-CoA carboxylase biotin carboxyl carrier protein; biotin carboxyl carrier protein complement(1597911..1598396) Rubrobacter xylanophilus DSM 9941 4116455 YP_644348.1 CDS Rxyl_1574 NC_008148.1 1598397 1599497 R PFAM: pyruvate phosphate dikinase, PEP/pyruvate-binding; KEGG: mka:MK0252 phosphoenolpyruvate synthase/pyruvate phosphate dikinase; pyruvate,water dikinase complement(1598397..1599497) Rubrobacter xylanophilus DSM 9941 4116456 YP_644349.1 CDS Rxyl_1575 NC_008148.1 1599490 1601322 R PFAM: PEP-utilising enzyme, mobile region; KEGG: gme:Gmet_2100 hypothetical protein; hypothetical protein complement(1599490..1601322) Rubrobacter xylanophilus DSM 9941 4116457 YP_644350.1 CDS Rxyl_1576 NC_008148.1 1601462 1602403 R PFAM: methylenetetrahydrofolate reductase; KEGG: hma:pNG7363 5,10-methylenetetrahydrofolate reductase; methylenetetrahydrofolate reductase complement(1601462..1602403) Rubrobacter xylanophilus DSM 9941 4116458 YP_644351.1 CDS Rxyl_1577 NC_008148.1 1602582 1602968 R TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; KEGG: sma:SAV1968 putative 3-oxoadipate enol-lactone hydrolase; 4-carboxymuconolactone decarboxylase complement(1602582..1602968) Rubrobacter xylanophilus DSM 9941 4116459 YP_644352.1 CDS Rxyl_1578 NC_008148.1 1602965 1603750 R TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: tfu:Tfu_0874 alpha/beta hydrolase; 3-oxoadipate enol-lactonase complement(1602965..1603750) Rubrobacter xylanophilus DSM 9941 4116460 YP_644353.1 CDS Rxyl_1579 NC_008148.1 1603747 1605093 R TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; KEGG: xcb:XC_0381 3-carboxy-cis,cis-muconate cycloisomerase; 3-carboxy-cis,cis-muconate cycloisomerase complement(1603747..1605093) Rubrobacter xylanophilus DSM 9941 4116461 YP_644354.1 CDS Rxyl_1580 NC_008148.1 1605090 1605680 R KEGG: reu:Reut_B5024 intradiol ring-cleavage dioxygenase; TIGRFAM: Protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase; protocatechuate 3,4-dioxygenase subunit alpha complement(1605090..1605680) Rubrobacter xylanophilus DSM 9941 4116462 YP_644355.1 CDS Rxyl_1581 NC_008148.1 1605680 1606414 R TIGRFAM: Protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: pfo:Pfl_1270 intradiol ring-cleavage dioxygenase; protocatechuate 3,4-dioxygenase subunit beta complement(1605680..1606414) Rubrobacter xylanophilus DSM 9941 4116463 YP_644356.1 CDS Rxyl_1582 NC_008148.1 1606431 1607705 R PFAM: Thiolase; KEGG: tth:TTC0623 beta-ketoadipyl CoA thiolase; acetyl-CoA C-acetyltransferase complement(1606431..1607705) Rubrobacter xylanophilus DSM 9941 4117028 YP_644357.1 CDS Rxyl_1583 NC_008148.1 1607742 1608551 R PFAM: coenzyme A transferase; KEGG: nfa:nfa35180 putative CoA transferase B subunit; glutaconate CoA-transferase complement(1607742..1608551) Rubrobacter xylanophilus DSM 9941 4117029 YP_644358.1 CDS Rxyl_1584 NC_008148.1 1608548 1609408 R PFAM: coenzyme A transferase; KEGG: nfa:nfa35190 putative CoA transferase A subunit; glutaconate CoA-transferase complement(1608548..1609408) Rubrobacter xylanophilus DSM 9941 4117030 YP_644359.1 CDS Rxyl_1585 NC_008148.1 1609551 1610522 D PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: gvi:glr3360 LysR family transcriptional regulatory protein; LysR family transcriptional regulator 1609551..1610522 Rubrobacter xylanophilus DSM 9941 4117031 YP_644360.1 CDS Rxyl_1586 NC_008148.1 1610519 1611634 D PFAM: Methionine synthase, vitamin-B12 independent Cobalamin-independent synthase MetE-like; KEGG: rpb:RPB_1584 methionine synthase, vitamin-B12 independent; methionine synthase, vitamin-B12 independent 1610519..1611634 Rubrobacter xylanophilus DSM 9941 4117032 YP_644361.1 CDS Rxyl_1587 NC_008148.1 1611858 1613210 D PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: bja:bll0889 putative transport protein; major facilitator transporter 1611858..1613210 Rubrobacter xylanophilus DSM 9941 4117033 YP_644362.1 CDS Rxyl_1588 NC_008148.1 1613308 1613769 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1613308..1613769 Rubrobacter xylanophilus DSM 9941 4117034 YP_644363.1 CDS Rxyl_1589 NC_008148.1 1613766 1614791 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ret:RHE_CH02965 probable L-iditol 2-dehydrogenase protein; alcohol dehydrogenase GroES-like protein 1613766..1614791 Rubrobacter xylanophilus DSM 9941 4117035 YP_644364.1 CDS Rxyl_1590 NC_008148.1 1614788 1615648 D PFAM: Xylose isomerase-like TIM barrel; KEGG: pfl:PFL_5391 hypothetical protein; xylose isomerase-like protein 1614788..1615648 Rubrobacter xylanophilus DSM 9941 4117036 YP_644365.1 CDS Rxyl_1591 NC_008148.1 1615653 1616219 R hypothetical protein complement(1615653..1616219) Rubrobacter xylanophilus DSM 9941 4117037 YP_644366.1 CDS Rxyl_1592 NC_008148.1 1616506 1617639 R PFAM: phage integrase; KEGG: mta:Moth_1796 phage integrase; phage integrase complement(1616506..1617639) Rubrobacter xylanophilus DSM 9941 4117038 YP_644367.1 CDS Rxyl_1593 NC_008148.1 1618175 1618540 R hypothetical protein complement(1618175..1618540) Rubrobacter xylanophilus DSM 9941 4117039 YP_644368.1 CDS Rxyl_1594 NC_008148.1 1618554 1618910 R hypothetical protein complement(1618554..1618910) Rubrobacter xylanophilus DSM 9941 4117040 YP_644369.1 CDS Rxyl_1595 NC_008148.1 1618926 1619354 R hypothetical protein complement(1618926..1619354) Rubrobacter xylanophilus DSM 9941 4117041 YP_644370.1 CDS Rxyl_1596 NC_008148.1 1619430 1620344 R KEGG: dra:DR0528 hypothetical protein; hypothetical protein complement(1619430..1620344) Rubrobacter xylanophilus DSM 9941 4117042 YP_644371.1 CDS Rxyl_1597 NC_008148.1 1620426 1620773 R hypothetical protein complement(1620426..1620773) Rubrobacter xylanophilus DSM 9941 4117043 YP_644372.1 CDS Rxyl_1598 NC_008148.1 1621223 1622788 R KEGG: nwi:Nwi_1258 hypothetical protein; hypothetical protein complement(1621223..1622788) Rubrobacter xylanophilus DSM 9941 4117044 YP_644373.1 CDS Rxyl_1599 NC_008148.1 1622818 1623555 R KEGG: mhu:Mhun_0707 hypothetical protein; hypothetical protein complement(1622818..1623555) Rubrobacter xylanophilus DSM 9941 4117045 YP_644374.1 CDS Rxyl_1600 NC_008148.1 1623568 1623783 R TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Prophage CP4-57 regulatory; excisionase/Xis, DNA-binding protein complement(1623568..1623783) Rubrobacter xylanophilus DSM 9941 4117046 YP_644375.1 CDS Rxyl_1601 NC_008148.1 1623882 1624958 R hypothetical protein complement(1623882..1624958) Rubrobacter xylanophilus DSM 9941 4117047 YP_644376.1 CDS Rxyl_1602 NC_008148.1 1625509 1626354 R KEGG: gme:Gmet_0547 glutamate racemase; TIGRFAM: Glutamate racemase; PFAM: Asp/Glu racemase; glutamate racemase complement(1625509..1626354) Rubrobacter xylanophilus DSM 9941 4116349 YP_644377.1 CDS smpB NC_008148.1 1626824 1627276 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(1626824..1627276) Rubrobacter xylanophilus DSM 9941 4116350 YP_644378.1 CDS Rxyl_1604 NC_008148.1 1627273 1628880 R PFAM: ribonuclease II RNA binding S1; KEGG: nmu:Nmul_A1953 VacB and RNase II family 3'-5' exoribonuclease; RNAse R complement(1627273..1628880) Rubrobacter xylanophilus DSM 9941 4116351 YP_644379.1 CDS Rxyl_1605 NC_008148.1 1628963 1629850 R PFAM: protein of unknown function DUF214; KEGG: tte:TTE1976 cell division protein; cell division protein FtsX complement(1628963..1629850) Rubrobacter xylanophilus DSM 9941 4116352 YP_644380.1 CDS Rxyl_1606 NC_008148.1 1629840 1630526 R KEGG: tte:TTE1977 predicted ATPase involved in cell division; TIGRFAM: Cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: ATPase; cell division ATP-binding protein FtsE complement(1629840..1630526) Rubrobacter xylanophilus DSM 9941 4116353 YP_644381.1 CDS Rxyl_1607 NC_008148.1 1630623 1631342 R hypothetical protein complement(1630623..1631342) Rubrobacter xylanophilus DSM 9941 4116354 YP_644382.1 CDS Rxyl_1608 NC_008148.1 1631528 1631869 D PFAM: regulatory protein, ArsR; KEGG: tel:tll0769 transcriptional regulator; ArsR family transcriptional regulator 1631528..1631869 Rubrobacter xylanophilus DSM 9941 4116355 YP_644383.1 CDS Rxyl_1609 NC_008148.1 1631887 1632129 R TIGRFAM: Glutaredoxin-like protein, YruB; PFAM: glutaredoxin; KEGG: gka:GK2075 glutaredoxin; glutaredoxin-like protein YruB complement(1631887..1632129) Rubrobacter xylanophilus DSM 9941 4116356 YP_644384.1 CDS Rxyl_1610 NC_008148.1 1632573 1632968 R PFAM: protein of unknown function DUF202; KEGG: sai:Saci_1091 membrane protein; hypothetical protein complement(1632573..1632968) Rubrobacter xylanophilus DSM 9941 4116357 YP_644385.1 CDS Rxyl_1611 NC_008148.1 1633021 1634697 R TIGRFAM: sulfate permease; PFAM: Sulfate transporter/antisigma-factor antagonist STAS Xanthine/uracil/vitamin C permease sulphate transporter; KEGG: gsu:GSU2312 sulfate transporter family protein; sulfate permease complement(1633021..1634697) Rubrobacter xylanophilus DSM 9941 4116358 YP_644386.1 CDS Rxyl_1612 NC_008148.1 1634889 1637792 R PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region molybdopterin oxidoreductase Fe4S4 region; KEGG: cch:Cag_1964 molybdenum enzyme related to thiosulfate reductase and polysulfide reductase, large subunit; molydopterin dinucleotide-binding region complement(1634889..1637792) Rubrobacter xylanophilus DSM 9941 4116359 YP_644387.1 CDS Rxyl_1613 NC_008148.1 1637821 1639416 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding Polysulphide reductase, NrfD; KEGG: plt:Plut_0026 Fe-S-cluster-containing hydrogenase components 1-like; 4Fe-4S ferredoxin complement(1637821..1639416) Rubrobacter xylanophilus DSM 9941 4116360 YP_644388.1 CDS Rxyl_1614 NC_008148.1 1639523 1640458 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: gme:Gmet_1084 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1639523..1640458) Rubrobacter xylanophilus DSM 9941 4116361 YP_644389.1 CDS Rxyl_1616 NC_008148.1 1641145 1642260 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ade:Adeh_2884 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1641145..1642260) Rubrobacter xylanophilus DSM 9941 4116362 YP_644390.1 CDS Rxyl_1617 NC_008148.1 1642247 1642714 R PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: mlo:msr8615 hypothetical protein; hypothetical protein complement(1642247..1642714) Rubrobacter xylanophilus DSM 9941 4116363 YP_644391.1 CDS Rxyl_1618 NC_008148.1 1642726 1643139 R PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: bbr:BB0225 putative membrane protein; hypothetical protein complement(1642726..1643139) Rubrobacter xylanophilus DSM 9941 4116364 YP_644392.1 CDS Rxyl_1619 NC_008148.1 1643340 1644779 D PFAM: beta-lactamase-like Rhodanese-like; KEGG: cgb:cg0071 metallo-beta-lactamase superfamily; beta-lactamase-like protein 1643340..1644779 Rubrobacter xylanophilus DSM 9941 4116365 YP_644393.1 CDS Rxyl_1620 NC_008148.1 1644733 1645833 R TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor PCRF; KEGG: pca:Pcar_1247 peptide chain release factor 2; peptide chain release factor 2 complement(1644733..1645833) Rubrobacter xylanophilus DSM 9941 4116366 YP_644394.1 CDS Rxyl_1621 NC_008148.1 1645838 1648546 R TIGRFAM: preprotein translocase, SecA subunit; PFAM: SEC-C motif SecA DEAD-like SecA Wing and Scaffold SecA preprotein cross-linking region; KEGG: chy:CHY_0162 translocase; protein translocase subunit secA complement(1645838..1648546) Rubrobacter xylanophilus DSM 9941 4116367 YP_644395.1 CDS Rxyl_1622 NC_008148.1 1648573 1649142 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: cya:CYA_2445 ribosomal subunit interface protein; sigma 54 modulation protein/30S ribosomal protein S30P complement(1648573..1649142) Rubrobacter xylanophilus DSM 9941 4116329 YP_644396.1 CDS Rxyl_1623 NC_008148.1 1649169 1649852 R PFAM: phosphoribosyltransferase; KEGG: gsu:GSU0124 competence protein F, putative; phosphoribosyltransferase complement(1649169..1649852) Rubrobacter xylanophilus DSM 9941 4116330 YP_644397.1 CDS Rxyl_1624 NC_008148.1 1649865 1650968 R PFAM: transferase hexapeptide repeat Nucleotidyl transferase; KEGG: det:DET1208 nucleotidyltransferase family protein; nucleotidyl transferase complement(1649865..1650968) Rubrobacter xylanophilus DSM 9941 4116331 YP_644398.1 CDS Rxyl_1625 NC_008148.1 1650981 1652423 R KEGG: gsu:GSU0351 NADH dehydrogenase I, N subunit; TIGRFAM: Proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit N complement(1650981..1652423) Rubrobacter xylanophilus DSM 9941 4116332 YP_644399.1 CDS Rxyl_1626 NC_008148.1 1652425 1653879 R KEGG: gvi:gll2536 NADH dehydrogenase subunit 4; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M complement(1652425..1653879) Rubrobacter xylanophilus DSM 9941 4116333 YP_644400.1 CDS Rxyl_1627 NC_008148.1 1653876 1655846 R KEGG: mta:Moth_0985 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L complement(1653876..1655846) Rubrobacter xylanophilus DSM 9941 4116334 YP_644401.1 CDS Rxyl_1628 NC_008148.1 1655864 1656202 R PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: bcz:BCZK4993 NADH dehydrogenase I, subunit K (NADH-quinone oxidoreductase, chain K); NADH-ubiquinone oxidoreductase subunit 4L complement(1655864..1656202) Rubrobacter xylanophilus DSM 9941 4116335 YP_644402.1 CDS Rxyl_1629 NC_008148.1 1656202 1656735 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: sye:Syncc9902_0282 NADH dehydrogenase subunit J; NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 complement(1656202..1656735) Rubrobacter xylanophilus DSM 9941 4116336 YP_644403.1 CDS Rxyl_1630 NC_008148.1 1656852 1657847 R PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: noc:Noc_2558 respiratory-chain NADH dehydrogenase, subunit 1; respiratory-chain NADH dehydrogenase subunit 1 complement(1656852..1657847) Rubrobacter xylanophilus DSM 9941 4116337 YP_644404.1 CDS Rxyl_1631 NC_008148.1 1657847 1658923 R PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; KEGG: gka:GK3353 NADH:ubiquinone oxidoreductase subunit 7; NADH dehydrogenase (ubiquinone) complement(1657847..1658923) Rubrobacter xylanophilus DSM 9941 4116338 YP_644405.1 CDS Rxyl_1632 NC_008148.1 1659042 1659533 R PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit; KEGG: sme:SMa1531 NADH dehydrogenase I chain C; NADH dehydrogenase (ubiquinone), 30 kDa subunit complement(1659042..1659533) Rubrobacter xylanophilus DSM 9941 4116339 YP_644406.1 CDS Rxyl_1633 NC_008148.1 1659535 1660290 R KEGG: gka:GK3355 NADH:ubiquinone oxidoreductase chain B (Fe-S oxidoreductases); TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH-quinone oxidoreductase subunit B complement(1659535..1660290) Rubrobacter xylanophilus DSM 9941 4116340 YP_644407.1 CDS Rxyl_1634 NC_008148.1 1660281 1660670 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: cte:CT0766 NADH dehydrogenase I, subunit 3; NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 complement(1660281..1660670) Rubrobacter xylanophilus DSM 9941 4116341 YP_644408.1 CDS Rxyl_1635 NC_008148.1 1660760 1661962 R PFAM: peptidase M20 peptidase dimerisation; KEGG: bcl:ABC3512 succinyl-diaminopimelate desuccinylase; peptidase M20 complement(1660760..1661962) Rubrobacter xylanophilus DSM 9941 4116342 YP_644409.1 CDS Rxyl_1636 NC_008148.1 1661983 1663263 R TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: gka:GK3341 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(1661983..1663263) Rubrobacter xylanophilus DSM 9941 4116343 YP_644410.1 CDS Rxyl_1637 NC_008148.1 1663332 1663772 R TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+-transporting two-sector ATPase, delta/epsilon subunit; KEGG: bha:BH3753 ATP synthase epsilon subunit; ATP synthase F1 subunit epsilon complement(1663332..1663772) Rubrobacter xylanophilus DSM 9941 4116344 YP_644411.1 CDS Rxyl_1638 NC_008148.1 1663772 1665313 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(1663772..1665313) Rubrobacter xylanophilus DSM 9941 4116345 YP_644412.1 CDS Rxyl_1639 NC_008148.1 1665329 1666201 R KEGG: chy:CHY_2546 ATP synthase F1, gamma subunit; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+-transporting two-sector ATPase, gamma subunit; ATP synthase F1 subunit gamma complement(1665329..1666201) Rubrobacter xylanophilus DSM 9941 4116346 YP_644413.1 CDS Rxyl_1640 NC_008148.1 1666205 1667785 R KEGG: tma:TM1612 ATP synthase F1, subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region H+-transporting two-sector ATPase, alpha/beta subunit-like; ATP synthase F1 subunit alpha complement(1666205..1667785) Rubrobacter xylanophilus DSM 9941 4116347 YP_644414.1 CDS Rxyl_1641 NC_008148.1 1667785 1668324 R TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit; KEGG: chy:CHY_2548 ATP synthase F1, delta subunit; ATP synthase F1 subunit delta complement(1667785..1668324) Rubrobacter xylanophilus DSM 9941 4116348 YP_644415.1 CDS Rxyl_1642 NC_008148.1 1668321 1668845 R TIGRFAM: ATP synthase F0, B subunit; PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: sru:SRU_0913 ATP synthase F0, B subunit; ATP synthase F0 subunit B complement(1668321..1668845) Rubrobacter xylanophilus DSM 9941 4116251 YP_644416.1 CDS Rxyl_1643 NC_008148.1 1668885 1669208 R TIGRFAM: ATP synthase F0, C subunit; PFAM: H+-transporting two-sector ATPase, C subunit; KEGG: bsu:BG10816 ATP synthase c chain; ATP synthase F0 subunit C complement(1668885..1669208) Rubrobacter xylanophilus DSM 9941 4116252 YP_644417.1 CDS Rxyl_1644 NC_008148.1 1669216 1669992 R TIGRFAM: ATP synthase F0, A subunit; PFAM: H+-transporting two-sector ATPase, A subunit; KEGG: cte:CT0021 ATP synthase F0, A subunit; ATP synthase F0 subunit A complement(1669216..1669992) Rubrobacter xylanophilus DSM 9941 4116253 YP_644418.1 CDS Rxyl_1645 NC_008148.1 1670010 1670432 R hypothetical protein complement(1670010..1670432) Rubrobacter xylanophilus DSM 9941 4116254 YP_644419.1 CDS Rxyl_1646 NC_008148.1 1670432 1670650 R hypothetical protein complement(1670432..1670650) Rubrobacter xylanophilus DSM 9941 4116255 YP_644420.1 CDS Rxyl_1647 NC_008148.1 1670705 1671178 R PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: chy:CHY_2556 putative ComE operon protein 2; CMP/dCMP deaminase complement(1670705..1671178) Rubrobacter xylanophilus DSM 9941 4116256 YP_644421.1 CDS Rxyl_1648 NC_008148.1 1671165 1671803 R TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: sth:STH79 uracil phosphoribosyltransferase; uracil phosphoribosyltransferase complement(1671165..1671803) Rubrobacter xylanophilus DSM 9941 4116257 YP_644422.1 CDS Rxyl_1649 NC_008148.1 1671796 1673100 R PFAM: glycine hydroxymethyltransferase aromatic amino acid beta-eliminating lyase/threonine aldolase aminotransferase, class I and II; KEGG: tte:TTE2130 glycine hydroxymethyltransferase; serine hydroxymethyltransferase complement(1671796..1673100) Rubrobacter xylanophilus DSM 9941 4116258 YP_644423.1 CDS Rxyl_1650 NC_008148.1 1673160 1673735 R TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: SUA5/yciO/yrdC-like; KEGG: tfu:Tfu_1961 SUA5/YciO/YrdC/YwlC; translation factor SUA5 complement(1673160..1673735) Rubrobacter xylanophilus DSM 9941 4116259 YP_644424.1 CDS Rxyl_1651 NC_008148.1 1673732 1674574 R TIGRFAM: modification methylase, HemK family; PFAM: putative RNA methylase methyltransferase small ribosomal L11 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: sth:STH74 putative protoporphyrinogen oxidase; HemK family modification methylase complement(1673732..1674574) Rubrobacter xylanophilus DSM 9941 4116260 YP_644425.1 CDS Rxyl_1652 NC_008148.1 1674606 1675700 R TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor PCRF; KEGG: chy:CHY_2563 peptide chain release factor 1; peptide chain release factor 1 complement(1674606..1675700) Rubrobacter xylanophilus DSM 9941 4116261 YP_644426.1 CDS Rxyl_1653 NC_008148.1 1675703 1676611 R PFAM: protein of unknown function DUF1385; KEGG: sth:STH72 hypothetical protein; hypothetical protein complement(1675703..1676611) Rubrobacter xylanophilus DSM 9941 4116262 YP_644427.1 CDS Rxyl_1654 NC_008148.1 1676624 1676893 R PFAM: ribosomal protein L31; KEGG: sco:SCO3427 putative 50S ribosomal protein L31; 50S ribosomal protein L31 complement(1676624..1676893) Rubrobacter xylanophilus DSM 9941 4116263 YP_644428.1 CDS rho NC_008148.1 1676986 1678482 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(1676986..1678482) Rubrobacter xylanophilus DSM 9941 4116264 YP_644429.1 CDS glpX NC_008148.1 1678558 1679559 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(1678558..1679559) Rubrobacter xylanophilus DSM 9941 4116265 YP_644430.1 CDS Rxyl_1657 NC_008148.1 1679700 1681028 R KEGG: mka:MK0505 cyclic 2,3-diphosphoglycerate-synthetase; cyclic 2,3-diphosphoglycerate-synthetase complement(1679700..1681028) Rubrobacter xylanophilus DSM 9941 4116266 YP_644431.1 CDS Rxyl_1658 NC_008148.1 1681038 1681862 R PFAM: metallophosphoesterase; KEGG: mac:MA1686 3',5'-cyclic-nucleotide phosphodiesterase; metallophosphoesterase complement(1681038..1681862) Rubrobacter xylanophilus DSM 9941 4116267 YP_644432.1 CDS Rxyl_1659 NC_008148.1 1681918 1683549 R KEGG: gka:GK3401 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; arginyl-tRNA synthetase complement(1681918..1683549) Rubrobacter xylanophilus DSM 9941 4116268 YP_644433.1 CDS Rxyl_1660 NC_008148.1 1683539 1683778 R hypothetical protein complement(1683539..1683778) Rubrobacter xylanophilus DSM 9941 4116269 YP_644434.1 CDS Rxyl_1661 NC_008148.1 1683812 1684336 D PFAM: GCN5-related N-acetyltransferase; KEGG: bld:BLi01935 putative phosphinothricin N-acetyltransferase; RBL02351; N-acetyltransferase GCN5 1683812..1684336 Rubrobacter xylanophilus DSM 9941 4117146 YP_644435.1 CDS Rxyl_1662 NC_008148.1 1684327 1684803 R PFAM: protein of unknown function DUF163; KEGG: gka:GK3467 hypothetical protein; hypothetical protein complement(1684327..1684803) Rubrobacter xylanophilus DSM 9941 4117147 YP_644436.1 CDS Rxyl_1663 NC_008148.1 1684800 1685624 R PFAM: beta-lactamase-like; KEGG: dps:DP2606 hypothetical protein; beta-lactamase-like protein complement(1684800..1685624) Rubrobacter xylanophilus DSM 9941 4117148 YP_644437.1 CDS Rxyl_1664 NC_008148.1 1685701 1686504 R PFAM: peptidase C60, sortase A and B; KEGG: cpe:CPE2315 sortase, putative; peptidase C60, sortase A and B complement(1685701..1686504) Rubrobacter xylanophilus DSM 9941 4117149 YP_644438.1 CDS Rxyl_1665 NC_008148.1 1686510 1687196 R TIGRFAM: Twin-arginine translocation pathway signal; KEGG: tth:TT_P0169 hypothetical protein; twin-arginine translocation pathway signal protein complement(1686510..1687196) Rubrobacter xylanophilus DSM 9941 4117150 YP_644439.1 CDS Rxyl_1666 NC_008148.1 1687207 1687878 R TIGRFAM: Twin-arginine translocation pathway signal; KEGG: ttj:TTHB213 hypothetical protein; twin-arginine translocation pathway signal protein complement(1687207..1687878) Rubrobacter xylanophilus DSM 9941 4117151 YP_644440.1 CDS Rxyl_1667 NC_008148.1 1688019 1688606 D PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: gvi:gll2708 RNA polymerase ECF-type (group 3) sigma factor; ECF subfamily RNA polymerase sigma-24 factor 1688019..1688606 Rubrobacter xylanophilus DSM 9941 4117152 YP_644441.1 CDS Rxyl_1668 NC_008148.1 1688612 1689334 D KEGG: sco:SCO0633 hypothetical protein; hypothetical protein 1688612..1689334 Rubrobacter xylanophilus DSM 9941 4117153 YP_644442.1 CDS Rxyl_1669 NC_008148.1 1689408 1689620 D PFAM: protein of unknown function DUF1458; KEGG: jan:Jann_3624 protein of unknown function DUF1458; hypothetical protein 1689408..1689620 Rubrobacter xylanophilus DSM 9941 4117154 YP_644443.1 CDS Rxyl_1670 NC_008148.1 1689693 1690730 D KEGG: rpb:RPB_0495 putative ammonia monooxygenase; putative ammonia monooxygenase-like protein 1689693..1690730 Rubrobacter xylanophilus DSM 9941 4117155 YP_644444.1 CDS uvsE NC_008148.1 1690783 1691748 D TIGRFAM: UV-endonuclease uvde; PFAM: UV-endonuclease UvdE; KEGG: tth:TT_P0052 probable UV endonuclease; putative UV damage endonuclease 1690783..1691748 Rubrobacter xylanophilus DSM 9941 4117156 YP_644445.1 CDS Rxyl_1672 NC_008148.1 1691666 1692097 D PFAM: CoA-binding; KEGG: mag:amb2851 protein YccU; CoA-binding protein 1691666..1692097 Rubrobacter xylanophilus DSM 9941 4117157 YP_644446.1 CDS Rxyl_1673 NC_008148.1 1692132 1692803 D TIGRFAM: haloacid dehalogenase, type II HAD-superfamily hydrolase, subfamily IA, variant 2; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: ilo:IL1575 L-2-haloalkanoic acid dehalogenase, HAD superfamily; haloacid dehalogenase I 1692132..1692803 Rubrobacter xylanophilus DSM 9941 4117158 YP_644447.1 CDS Rxyl_1674 NC_008148.1 1692814 1693281 D KEGG: dde:Dde_1863 hypothetical protein; hypothetical protein 1692814..1693281 Rubrobacter xylanophilus DSM 9941 4117159 YP_644448.1 CDS Rxyl_1675 NC_008148.1 1693304 1694782 D PFAM: carbohydrate kinase, FGGY; KEGG: gka:GK1941 gluconokinase; carbohydrate kinase 1693304..1694782 Rubrobacter xylanophilus DSM 9941 4117160 YP_644449.1 CDS Rxyl_1676 NC_008148.1 1694846 1696183 R KEGG: fra:Francci3_0083 citrate synthase I; TIGRFAM: Citrate synthase I; PFAM: Citrate synthase; citrate synthase complement(1694846..1696183) Rubrobacter xylanophilus DSM 9941 4117161 YP_644450.1 CDS Rxyl_1677 NC_008148.1 1696314 1696769 D hypothetical protein 1696314..1696769 Rubrobacter xylanophilus DSM 9941 4117162 YP_644451.1 CDS Rxyl_1678 NC_008148.1 1696742 1697389 R PFAM: class II aldolase/adducin-like; KEGG: pca:Pcar_3030 L-fuculose phosphate aldolase; class II aldolase/adducin-like protein complement(1696742..1697389) Rubrobacter xylanophilus DSM 9941 4117163 YP_644452.1 CDS Rxyl_1679 NC_008148.1 1697403 1699493 R TIGRFAM: Bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin-like NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: bld:BLi03561 short chain dehydrogenase; short chain dehydrogenase complement(1697403..1699493) Rubrobacter xylanophilus DSM 9941 4117164 YP_644453.1 CDS Rxyl_1680 NC_008148.1 1699528 1700745 R TIGRFAM: Rhamnose isomerase related; PFAM: Xylose isomerase-like TIM barrel; KEGG: bld:BLi03559 xylose isomerase; RBL03134; rhamnose isomerase related complement(1699528..1700745) Rubrobacter xylanophilus DSM 9941 4117165 YP_644454.1 CDS Rxyl_1681 NC_008148.1 1700841 1701875 R KEGG: sco:SCO0808 putative secreted solute-binding lipoprotein; putative secreted solute-binding lipoprotein complement(1700841..1701875) Rubrobacter xylanophilus DSM 9941 4116640 YP_644455.1 CDS Rxyl_1682 NC_008148.1 1701922 1702890 R PFAM: inner-membrane translocator; KEGG: pmu:PM1378 ribose ABC transporter, permease protein; inner-membrane translocator complement(1701922..1702890) Rubrobacter xylanophilus DSM 9941 4116641 YP_644456.1 CDS Rxyl_1683 NC_008148.1 1702887 1703876 R PFAM: inner-membrane translocator; KEGG: bpm:BURPS1710b_2071 ribose ABC transporter, permease protein; inner-membrane translocator complement(1702887..1703876) Rubrobacter xylanophilus DSM 9941 4116642 YP_644457.1 CDS Rxyl_1684 NC_008148.1 1703873 1705432 R PFAM: ABC transporter related; SMART: ATPase; KEGG: sma:SAV7416 putative ABC transporter ATP-binding protein; ABC transporter-like protein complement(1703873..1705432) Rubrobacter xylanophilus DSM 9941 4116643 YP_644458.1 CDS Rxyl_1685 NC_008148.1 1705434 1706933 R PFAM: carbohydrate kinase, FGGY; KEGG: sco:SCO0814 putative rhamnose kinase; carbohydrate kinase complement(1705434..1706933) Rubrobacter xylanophilus DSM 9941 4116644 YP_644459.1 CDS Rxyl_1686 NC_008148.1 1706930 1707319 R KEGG: bld:BLi03560 hypothetical protein; hypothetical protein complement(1706930..1707319) Rubrobacter xylanophilus DSM 9941 4116645 YP_644460.1 CDS Rxyl_1687 NC_008148.1 1707312 1708121 R PFAM: regulatory protein, DeoR Helix-turn-helix, type 11; KEGG: sth:STH793 DeoR-family transcriptional regulator; DeoR family transcriptional regulator complement(1707312..1708121) Rubrobacter xylanophilus DSM 9941 4116646 YP_644461.1 CDS prpE NC_008148.1 1711679 1713589 R catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase complement(1711679..1713589) Rubrobacter xylanophilus DSM 9941 4116647 YP_644462.1 CDS Rxyl_1690 NC_008148.1 1713663 1714796 R PFAM: Stage II sporulation E PAS fold-4; SMART: PAS Protein phosphatase 2C-like; KEGG: sco:SCO5747 regulatory protein; putative PAS/PAC sensor protein complement(1713663..1714796) Rubrobacter xylanophilus DSM 9941 4116648 YP_644463.1 CDS Rxyl_1691 NC_008148.1 1714798 1715175 R TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sma:SAV4614 putative anti-sigma factor antagonist; anti-sigma-factor antagonist complement(1714798..1715175) Rubrobacter xylanophilus DSM 9941 4116649 YP_644464.1 CDS Rxyl_1692 NC_008148.1 1715315 1715818 R TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase-like; KEGG: pab:PAB0892 3-isopropylmalate dehydratase small subunit; 3-isopropylmalate dehydratase small subunit complement(1715315..1715818) Rubrobacter xylanophilus DSM 9941 4116650 YP_644465.1 CDS Rxyl_1693 NC_008148.1 1715815 1717089 R KEGG: mta:Moth_2254 3-isopropylmalate dehydratase, large subunit; TIGRFAM: homoaconitate hydratase family protein 3-isopropylmalate dehydratase; PFAM: aconitate hydratase-like; homoaconitate hydratase family protein complement(1715815..1717089) Rubrobacter xylanophilus DSM 9941 4116651 YP_644466.1 CDS Rxyl_1694 NC_008148.1 1717070 1717699 R PFAM: isochorismatase hydrolase; KEGG: nph:NP6214A homolog 1 to N-carbamoylsarcosine amidase; isochorismatase hydrolase complement(1717070..1717699) Rubrobacter xylanophilus DSM 9941 4116652 YP_644467.1 CDS Rxyl_1695 NC_008148.1 1717696 1719594 R PFAM: Hydantoinase B/oxoprolinase; KEGG: nph:NP6216A N-methylhydantoinase (ATP-hydrolyzing) B 2; 5-oxoprolinase complement(1717696..1719594) Rubrobacter xylanophilus DSM 9941 4116653 YP_644468.1 CDS Rxyl_1696 NC_008148.1 1719600 1721654 R PFAM: Hydantoinase/oxoprolinase Hydantoinaseoxoprolinase-like; KEGG: nph:NP6218A N-methylhydantoinase (ATP-hydrolyzing) A 2; 5-oxoprolinase complement(1719600..1721654) Rubrobacter xylanophilus DSM 9941 4116654 YP_644469.1 CDS Rxyl_1697 NC_008148.1 1721695 1722588 R PFAM: pyruvate carboxyltransferase; KEGG: nar:Saro_0177 pyruvate carboxyltransferase; hydroxymethylglutaryl-CoA lyase complement(1721695..1722588) Rubrobacter xylanophilus DSM 9941 4116655 YP_644470.1 CDS Rxyl_1698 NC_008148.1 1722588 1723802 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ccr:CC3562 hypothetical protein; succinyl-CoA:(R)-citramalate CoA-transferase complement(1722588..1723802) Rubrobacter xylanophilus DSM 9941 4116656 YP_644471.1 CDS Rxyl_1699 NC_008148.1 1723837 1724115 D hypothetical protein 1723837..1724115 Rubrobacter xylanophilus DSM 9941 4116657 YP_644472.1 CDS Rxyl_1700 NC_008148.1 1724250 1724744 R PFAM: GntR-like; KEGG: bcl:ABC0546 transcriptional regulator; GntR family transcriptional regulator complement(1724250..1724744) Rubrobacter xylanophilus DSM 9941 4116658 YP_644473.1 CDS Rxyl_1701 NC_008148.1 1725000 1726520 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(1725000..1726520) Rubrobacter xylanophilus DSM 9941 4116484 YP_644474.1 CDS Rxyl_1702 NC_008148.1 1726579 1728537 R PFAM: biotin/lipoyl attachment ATP-dependent carboxylate-amine ligase-like, ATP-grasp Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain-like biotin carboxylase-like; KEGG: rru:Rru_A1941 acyl-CoA carboxylase alpha chain; 3-methylcrotonoyl-CoA carboxylase subunit alpha complement(1726579..1728537) Rubrobacter xylanophilus DSM 9941 4116485 YP_644475.1 CDS Rxyl_1703 NC_008148.1 1728628 1730235 R PFAM: carboxyl transferase; KEGG: rso:RSc0269 putative propionyl-CoA carboxylase (beta subunit) protein; propionyl-CoA carboxylase complement(1728628..1730235) Rubrobacter xylanophilus DSM 9941 4116486 YP_644476.1 CDS Rxyl_1704 NC_008148.1 1730232 1731962 R PFAM: AMP-dependent synthetase and ligase; KEGG: bpm:BURPS1710b_1709 acetyl-coenzyme A synthetase; AMP-dependent synthetase and ligase complement(1730232..1731962) Rubrobacter xylanophilus DSM 9941 4116487 YP_644477.1 CDS Rxyl_1705 NC_008148.1 1732032 1733126 R KEGG: mbo:Mb0593c PE-PGRS family protein; hypothetical protein complement(1732032..1733126) Rubrobacter xylanophilus DSM 9941 4116488 YP_644478.1 CDS Rxyl_1706 NC_008148.1 1733302 1733646 R hypothetical protein complement(1733302..1733646) Rubrobacter xylanophilus DSM 9941 4116489 YP_644479.1 CDS Rxyl_1707 NC_008148.1 1733643 1734809 R PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: sth:STH1571 acyl-CoA dehydrogenase, short-chain specific; butyryl-CoA dehydrogenase complement(1733643..1734809) Rubrobacter xylanophilus DSM 9941 4116490 YP_644480.1 CDS Rxyl_1708 NC_008148.1 1734873 1735658 R PFAM: Conserved TM helix; KEGG: pca:Pcar_0638 hypothetical protein; hypothetical protein complement(1734873..1735658) Rubrobacter xylanophilus DSM 9941 4116491 YP_644481.1 CDS Rxyl_1709 NC_008148.1 1735683 1735997 R KEGG: ttj:TTHB212 hypothetical protein; putative transmembrane anti-sigma factor complement(1735683..1735997) Rubrobacter xylanophilus DSM 9941 4116492 YP_644482.1 CDS Rxyl_1710 NC_008148.1 1735994 1736494 R PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: mta:Moth_1843 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 factor complement(1735994..1736494) Rubrobacter xylanophilus DSM 9941 4116493 YP_644483.1 CDS Rxyl_1711 NC_008148.1 1736704 1738665 D PFAM: AMP-dependent synthetase and ligase; KEGG: dra:DR0460 acetyl-CoA synthase; AMP-dependent synthetase and ligase 1736704..1738665 Rubrobacter xylanophilus DSM 9941 4116494 YP_644484.1 CDS Rxyl_1712 NC_008148.1 1738737 1740467 D PFAM: beta-lactamase; KEGG: tel:tll2115 probable beta-lactamase; beta-lactamase 1738737..1740467 Rubrobacter xylanophilus DSM 9941 4116495 YP_644485.1 CDS Rxyl_1713 NC_008148.1 1740427 1741365 R TIGRFAM: conserved hypothetical protein; PFAM: diacylglycerol kinase, catalytic region; KEGG: ade:Adeh_3510 hypothetical protein; hypothetical protein complement(1740427..1741365) Rubrobacter xylanophilus DSM 9941 4116496 YP_644486.1 CDS Rxyl_1714 NC_008148.1 1741447 1742376 D TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: tbd:Tbd_0081 2-hydroxy-3-oxopropionate reductase; 2-hydroxy-3-oxopropionate reductase 1741447..1742376 Rubrobacter xylanophilus DSM 9941 4116497 YP_644487.1 CDS Rxyl_1715 NC_008148.1 1742408 1743226 R PFAM: Xylose isomerase-like TIM barrel; KEGG: rba:RB9367 probable IolI protein; xylose isomerase-like protein complement(1742408..1743226) Rubrobacter xylanophilus DSM 9941 4116498 YP_644488.1 CDS Rxyl_1716 NC_008148.1 1743327 1744844 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: bha:BH2312 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(1743327..1744844) Rubrobacter xylanophilus DSM 9941 4116499 YP_644489.1 CDS Rxyl_1717 NC_008148.1 1744872 1745669 R PFAM: Myo-inositol catabolism IolB region; KEGG: gka:GK1889 myo-inositol catabolism protein; myo-inositol catabolism IolB region complement(1744872..1745669) Rubrobacter xylanophilus DSM 9941 4116500 YP_644490.1 CDS Rxyl_1718 NC_008148.1 1745684 1747564 R PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: sma:SAV7147 putative acetolactate synthase; thiamine pyrophosphate enzyme, central region complement(1745684..1747564) Rubrobacter xylanophilus DSM 9941 4116501 YP_644491.1 CDS Rxyl_1719 NC_008148.1 1747617 1748405 R PFAM: ABC transporter related; SMART: ATPase; KEGG: bmb:BruAb1_1337 sugar ABC transporter, ATP-binding protein; ABC transporter-like protein complement(1747617..1748405) Rubrobacter xylanophilus DSM 9941 4116502 YP_644492.1 CDS Rxyl_1720 NC_008148.1 1748408 1749430 R PFAM: inner-membrane translocator; KEGG: mlo:mlr2441 permease protein of sugar ABC transporter; inner-membrane translocator complement(1748408..1749430) Rubrobacter xylanophilus DSM 9941 4116503 YP_644493.1 CDS Rxyl_1721 NC_008148.1 1749488 1750477 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bmb:BruAb1_1340 sugar ABC transporter, periplasmic sugar-binding protein; periplasmic binding protein/LacI transcriptional regulator complement(1749488..1750477) Rubrobacter xylanophilus DSM 9941 4116621 YP_644494.1 CDS Rxyl_1722 NC_008148.1 1750474 1751373 R PFAM: Xylose isomerase-like TIM barrel; KEGG: pac:PPA0468 putative myo-inositol catabolism protein; xylose isomerase-like protein complement(1750474..1751373) Rubrobacter xylanophilus DSM 9941 4116622 YP_644495.1 CDS Rxyl_1723 NC_008148.1 1751370 1752413 R PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: bur:Bcep18194_A4572 myo-inositol 2-dehydrogenase; myo-inositol 2-dehydrogenase complement(1751370..1752413) Rubrobacter xylanophilus DSM 9941 4116623 YP_644496.1 CDS Rxyl_1724 NC_008148.1 1752453 1753466 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bmb:BruAb1_1340 sugar ABC transporter, periplasmic sugar-binding protein; twin-arginine translocation pathway signal protein complement(1752453..1753466) Rubrobacter xylanophilus DSM 9941 4116624 YP_644497.1 CDS Rxyl_1725 NC_008148.1 1753514 1754677 R PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: gka:GK1898 myo-inositol 2-dehydrogenase; oxidoreductase-like protein complement(1753514..1754677) Rubrobacter xylanophilus DSM 9941 4116625 YP_644498.1 CDS Rxyl_1726 NC_008148.1 1754670 1755467 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bms:BR1338 short chain dehydrogenase; short chain dehydrogenase complement(1754670..1755467) Rubrobacter xylanophilus DSM 9941 4116626 YP_644499.1 CDS Rxyl_1727 NC_008148.1 1755467 1756462 R PFAM: Semialdehyde dehydrogenase, NAD - binding oxidoreductase-like Oxidoreductase-like; KEGG: sco:SCO6255 dehydrogenase; oxidoreductase-like protein complement(1755467..1756462) Rubrobacter xylanophilus DSM 9941 4116627 YP_644500.1 CDS Rxyl_1728 NC_008148.1 1756459 1758396 R PFAM: PfkB; KEGG: hch:HCH_01160 sugar kinase, ribokinase family; PfkB protein complement(1756459..1758396) Rubrobacter xylanophilus DSM 9941 4116628 YP_644501.1 CDS Rxyl_1729 NC_008148.1 1758393 1759583 R PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: sma:SAV7155 putative oxidoreductase; oxidoreductase-like protein complement(1758393..1759583) Rubrobacter xylanophilus DSM 9941 4116629 YP_644502.1 CDS Rxyl_1730 NC_008148.1 1759619 1760377 R PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: sco:SCO6974 GntR-family regulatory protein; GntR family transcriptional regulator complement(1759619..1760377) Rubrobacter xylanophilus DSM 9941 4116630 YP_644503.1 CDS Rxyl_1731 NC_008148.1 1760459 1761196 R TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: sth:STH606 glucosamine-6-phosphate isomerase; glucosamine-6-phosphate isomerase complement(1760459..1761196) Rubrobacter xylanophilus DSM 9941 4116631 YP_644504.1 CDS Rxyl_1732 NC_008148.1 1761193 1761642 R KEGG: ppr:PBPRA0861 putative PTS system, glucose-specific IIAcomponent; TIGRFAM: PTS system, glucose subfamily, IIA component; PFAM: sugar-specific permease, EIIA 1 domain; PTS system, glucose subfamily, IIA component complement(1761193..1761642) Rubrobacter xylanophilus DSM 9941 4116632 YP_644505.1 CDS Rxyl_1733 NC_008148.1 1761645 1763135 R TIGRFAM: Phosphotransferase system, N-acetylglucosamine-specific IIBC component; PFAM: phosphotransferase system PTS, EIIB phosphotransferase system, EIIC; KEGG: bte:BTH_I0450 PTS system, N-acetylglucosamine-specific IIABC component; phosphotransferase system, N-acetylglucosamine-specific IIBC component complement(1761645..1763135) Rubrobacter xylanophilus DSM 9941 4116633 YP_644506.1 CDS Rxyl_1734 NC_008148.1 1763219 1764850 R KEGG: tte:TTE2334 phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme PEP-utilising enzyme, mobile region PEP-utilising enzyme-like; phosphoenolpyruvate--protein phosphotransferase complement(1763219..1764850) Rubrobacter xylanophilus DSM 9941 4116634 YP_644507.1 CDS Rxyl_1735 NC_008148.1 1764855 1765115 R TIGRFAM: Phosphotransferase system, HPr; PFAM: phosphocarrier HPr protein; KEGG: bpn:BPEN_526 PTS family Hpr protein, phosphohistidinoprotein-hexose phosphotransferase; HPrNtr domain-containing protein complement(1764855..1765115) Rubrobacter xylanophilus DSM 9941 4116635 YP_644508.1 CDS Rxyl_1736 NC_008148.1 1765213 1765980 R PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: pae:PA2554 3-hydroxyacyl-CoA dehydrogenase; short-chain dehydrogenase/reductase SDR complement(1765213..1765980) Rubrobacter xylanophilus DSM 9941 4116636 YP_644509.1 CDS Rxyl_1737 NC_008148.1 1766003 1767187 R PFAM: Thiolase 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; KEGG: jan:Jann_0668 thiolase; thiolase complement(1766003..1767187) Rubrobacter xylanophilus DSM 9941 4116637 YP_644510.1 CDS Rxyl_1738 NC_008148.1 1767184 1768833 R PFAM: AMP-dependent synthetase and ligase; KEGG: gka:GK1030 long-chain fatty-acid-CoA ligase; AMP-dependent synthetase and ligase complement(1767184..1768833) Rubrobacter xylanophilus DSM 9941 4116638 YP_644511.1 CDS Rxyl_1739 NC_008148.1 1768858 1770480 R PFAM: phenylalanine/histidine ammonia-lyase; KEGG: vpa:VP0889 putative histidine ammonia-lyase protein; histidine ammonia-lyase complement(1768858..1770480) Rubrobacter xylanophilus DSM 9941 4116639 YP_644512.1 CDS Rxyl_1740 NC_008148.1 1770592 1771002 R PFAM: regulatory protein, MarR; KEGG: nfa:nfa19710 putative transcriptional regulator; MarR family transcriptional regulator complement(1770592..1771002) Rubrobacter xylanophilus DSM 9941 4116309 YP_644513.1 CDS Rxyl_1741 NC_008148.1 1771101 1771883 D KEGG: eli:ELI_01210 hypothetical protein; hypothetical protein 1771101..1771883 Rubrobacter xylanophilus DSM 9941 4116310 YP_644514.1 CDS Rxyl_1742 NC_008148.1 1771915 1772874 D KEGG: sma:SAV6711 putative ABC transporter ATP-binding protein; TIGRFAM: daunorubicin resistance ABC transporter ATP-binding subunit; PFAM: ABC transporter related; SMART: ATPase; daunorubicin resistance ABC transporter ATP-binding subunit 1771915..1772874 Rubrobacter xylanophilus DSM 9941 4116311 YP_644515.1 CDS Rxyl_1743 NC_008148.1 1772877 1773680 D PFAM: ABC-2 type transporter; KEGG: fra:Francci3_2021 ABC-2; ABC transporter 1772877..1773680 Rubrobacter xylanophilus DSM 9941 4116312 YP_644516.1 CDS Rxyl_1744 NC_008148.1 1773677 1775443 R PFAM: amidohydrolase Amidohydrolase 3; KEGG: gka:GK1989 adenine deaminase; adenine deaminase complement(1773677..1775443) Rubrobacter xylanophilus DSM 9941 4116313 YP_644517.1 CDS Rxyl_1745 NC_008148.1 1775446 1776453 R PFAM: beta-lactamase-like; KEGG: sth:STH985 hypothetical protein; beta-lactamase-like protein complement(1775446..1776453) Rubrobacter xylanophilus DSM 9941 4116314 YP_644518.1 CDS Rxyl_1746 NC_008148.1 1776450 1777655 R PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: cef:CE2777 glutaryl-CoA dehydrogenase; acyl-CoA dehydrogenase-like protein complement(1776450..1777655) Rubrobacter xylanophilus DSM 9941 4116315 YP_644519.1 CDS Rxyl_1747 NC_008148.1 1777732 1778397 R PFAM: regulatory protein, TetR; KEGG: tte:TTE1839 transcriptional regulator; TetR family transcriptional regulator complement(1777732..1778397) Rubrobacter xylanophilus DSM 9941 4116316 YP_644520.1 CDS Rxyl_1748 NC_008148.1 1778400 1779176 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sso:SSO1311 enoyl-CoA hydratase; short chain enoyl-CoA hydratase complement(1778400..1779176) Rubrobacter xylanophilus DSM 9941 4116317 YP_644521.1 CDS Rxyl_1749 NC_008148.1 1779196 1780641 R PFAM: aldehyde dehydrogenase; KEGG: mac:MA4079 aldehyde dehydrogenase (NAD(P)+); lactaldehyde dehydrogenase complement(1779196..1780641) Rubrobacter xylanophilus DSM 9941 4116318 YP_644522.1 CDS Rxyl_1750 NC_008148.1 1780643 1781194 R KEGG: ttj:TTHA1879 ferripyochelin-binding protein; carbonic anhydrase complement(1780643..1781194) Rubrobacter xylanophilus DSM 9941 4116319 YP_644523.1 CDS Rxyl_1752 NC_008148.1 1781319 1782149 R PFAM: phenylacetic acid catabolic; KEGG: hma:rrnB0249 phenylacetic acid degradation protein PaaC; phenylacetic acid catabolic complement(1781319..1782149) Rubrobacter xylanophilus DSM 9941 4116320 YP_644524.1 CDS Rxyl_1753 NC_008148.1 1782146 1782349 R hypothetical protein complement(1782146..1782349) Rubrobacter xylanophilus DSM 9941 4116321 YP_644525.1 CDS Rxyl_1754 NC_008148.1 1782359 1782550 R hypothetical protein complement(1782359..1782550) Rubrobacter xylanophilus DSM 9941 4116322 YP_644526.1 CDS Rxyl_1755 NC_008148.1 1782551 1782856 R PFAM: protein of unknown function DUF59; KEGG: gka:GK1994 hypothetical protein; hypothetical protein complement(1782551..1782856) Rubrobacter xylanophilus DSM 9941 4116323 YP_644527.1 CDS Rxyl_1756 NC_008148.1 1782856 1783803 R PFAM: phenylacetic acid catabolic; KEGG: gka:GK1995 phenylacetic acid catabolism protein; phenylacetic acid catabolic complement(1782856..1783803) Rubrobacter xylanophilus DSM 9941 4116324 YP_644528.1 CDS Rxyl_1757 NC_008148.1 1783859 1784740 R PFAM: amidohydrolase 2; KEGG: gme:Gmet_2147 amidohydrolase 2; amidohydrolase 2 complement(1783859..1784740) Rubrobacter xylanophilus DSM 9941 4116325 YP_644529.1 CDS Rxyl_1758 NC_008148.1 1784744 1785850 R PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: nmu:Nmul_A1473 zinc-containing alcohol dehydrogenase superfamily; zinc-binding alcohol dehydrogenase complement(1784744..1785850) Rubrobacter xylanophilus DSM 9941 4116326 YP_644530.1 CDS Rxyl_1759 NC_008148.1 1785867 1787450 R TIGRFAM: Benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: gme:Gmet_2143 benzoate-CoA ligase family; benzoate-CoA ligase complement(1785867..1787450) Rubrobacter xylanophilus DSM 9941 4116327 YP_644531.1 CDS Rxyl_1760 NC_008148.1 1787450 1788835 R PFAM: aldehyde dehydrogenase; KEGG: mba:Mbar_A0503 aldehyde dehydrogenase (NAD(P)+); succinate-semialdehyde dehydrogenase (NAD(P)+) complement(1787450..1788835) Rubrobacter xylanophilus DSM 9941 4116328 YP_644532.1 CDS Rxyl_1761 NC_008148.1 1789034 1790167 R PFAM: 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: sth:STH214 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase complement(1789034..1790167) Rubrobacter xylanophilus DSM 9941 4117556 YP_644533.1 CDS Rxyl_1762 NC_008148.1 1790258 1791061 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bld:BLi02140 similar to 3-hydroxbutyryl-CoA dehydratase; RBL01969; short chain enoyl-CoA hydratase 1790258..1791061 Rubrobacter xylanophilus DSM 9941 4117557 YP_644534.1 CDS Rxyl_1763 NC_008148.1 1791105 1791368 D hypothetical protein 1791105..1791368 Rubrobacter xylanophilus DSM 9941 4117558 YP_644535.1 CDS Rxyl_1764 NC_008148.1 1791377 1792540 D PFAM: major facilitator superfamily MFS_1; KEGG: tfu:Tfu_2994 putative transport protein; major facilitator transporter 1791377..1792540 Rubrobacter xylanophilus DSM 9941 4117559 YP_644536.1 CDS Rxyl_1765 NC_008148.1 1792599 1793945 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sco:SCO3443 putative pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulfide oxidoreductase dimerisation region 1792599..1793945 Rubrobacter xylanophilus DSM 9941 4117560 YP_644537.1 CDS Rxyl_1766 NC_008148.1 1793974 1794501 D hypothetical protein 1793974..1794501 Rubrobacter xylanophilus DSM 9941 4117561 YP_644538.1 CDS Rxyl_1767 NC_008148.1 1794597 1796243 D TIGRFAM: Mercuric reductase MerA; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase pyridine nucleotide-disulphide oxidoreductase dimerisation region Heavy metal transport/detoxification protein; KEGG: gka:GK3096 mercuric reductase; mercuric reductase MerA 1794597..1796243 Rubrobacter xylanophilus DSM 9941 4117562 YP_644539.1 CDS Rxyl_1768 NC_008148.1 1796257 1796829 D PFAM: alkylmercury lyase; KEGG: sep:SE0086 organomercurial lyase; alkylmercury lyase 1796257..1796829 Rubrobacter xylanophilus DSM 9941 4117563 YP_644540.1 CDS Rxyl_1769 NC_008148.1 1796929 1797489 D PFAM: alkylmercury lyase; KEGG: sep:SE0086 organomercurial lyase; alkylmercury lyase 1796929..1797489 Rubrobacter xylanophilus DSM 9941 4117564 YP_644541.1 CDS Rxyl_1770 NC_008148.1 1797530 1797907 D PFAM: regulatory protein, ArsR; KEGG: sto:ST1076 hypothetical transcriptional regulator; ArsR family transcriptional regulator 1797530..1797907 Rubrobacter xylanophilus DSM 9941 4117565 YP_644542.1 CDS Rxyl_1771 NC_008148.1 1797997 1798491 D hypothetical protein 1797997..1798491 Rubrobacter xylanophilus DSM 9941 4117566 YP_644543.1 CDS Rxyl_1772 NC_008148.1 1798533 1798844 D hypothetical protein 1798533..1798844 Rubrobacter xylanophilus DSM 9941 4117567 YP_644544.1 CDS Rxyl_1773 NC_008148.1 1798841 1799410 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: sth:STH2552 thiol-disulfide isomerase and thioredoxins; redoxin 1798841..1799410 Rubrobacter xylanophilus DSM 9941 4117568 YP_644545.1 CDS Rxyl_1774 NC_008148.1 1799407 1800168 D PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: dps:DP3099 hypothetical protein; cytochrome c biogenesis protein, transmembrane region 1799407..1800168 Rubrobacter xylanophilus DSM 9941 4117569 YP_644546.1 CDS Rxyl_1775 NC_008148.1 1800213 1800677 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: tvo:TVN0419 bacterioferritin comigratory protein; redoxin 1800213..1800677 Rubrobacter xylanophilus DSM 9941 4117570 YP_644547.1 CDS Rxyl_1776 NC_008148.1 1800649 1801326 R PFAM: amino acid-binding ACT; KEGG: mka:MK0609 predicted metabolic regulator containing the ACT domain; amino acid-binding protein complement(1800649..1801326) Rubrobacter xylanophilus DSM 9941 4117571 YP_644548.1 CDS Rxyl_1777 NC_008148.1 1801371 1802555 R catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase complement(1801371..1802555) Rubrobacter xylanophilus DSM 9941 4117572 YP_644549.1 CDS Rxyl_1778 NC_008148.1 1802591 1803949 R PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: reu:Reut_C6090 general substrate transporter:major facilitator superfamily MFS_1; major facilitator transporter complement(1802591..1803949) Rubrobacter xylanophilus DSM 9941 4117573 YP_644550.1 CDS Rxyl_1779 NC_008148.1 1803946 1805370 R KEGG: mca:MCA1184 hypothetical protein; hypothetical protein complement(1803946..1805370) Rubrobacter xylanophilus DSM 9941 4117574 YP_644551.1 CDS Rxyl_1780 NC_008148.1 1805367 1805825 R PFAM: GTP cyclohydrolase II; KEGG: sma:SAV6904 GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II complement(1805367..1805825) Rubrobacter xylanophilus DSM 9941 4117322 YP_644552.1 CDS Rxyl_1781 NC_008148.1 1805822 1806361 R PFAM: flavin reductase-like, FMN-binding; KEGG: sco:SCO5092 actinorhodin polyketide putative dimerase; flavin reductase-like protein complement(1805822..1806361) Rubrobacter xylanophilus DSM 9941 4117323 YP_644553.1 CDS Rxyl_1782 NC_008148.1 1806423 1806758 R hypothetical protein complement(1806423..1806758) Rubrobacter xylanophilus DSM 9941 4117324 YP_644554.1 CDS Rxyl_1783 NC_008148.1 1806755 1807411 R PFAM: NAD(P)H dehydrogenase (quinone) NADPH-dependent FMN reductase; KEGG: oih:OB3146 NADH-dependent FMN reductase; NADPH-dependent FMN reductase complement(1806755..1807411) Rubrobacter xylanophilus DSM 9941 4117325 YP_644555.1 CDS Rxyl_1784 NC_008148.1 1807411 1808592 R PFAM: luciferase-like; KEGG: bte:BTH_II1790 luciferase-like monooxygenase; luciferase-like protein complement(1807411..1808592) Rubrobacter xylanophilus DSM 9941 4117326 YP_644556.1 CDS Rxyl_1785 NC_008148.1 1808619 1808831 R PFAM: ubiquitin-associated; KEGG: mta:Moth_1033 translation elongation factor Ts; ubiquitin-associated protein complement(1808619..1808831) Rubrobacter xylanophilus DSM 9941 4117327 YP_644557.1 CDS Rxyl_1786 NC_008148.1 1809184 1809981 D PFAM: Formamidopyrimidine-DNA glycolase; KEGG: sru:SRU_0462 formamidopyrimidine-DNA glycosylase; DNA-formamidopyrimidine glycosylase 1809184..1809981 Rubrobacter xylanophilus DSM 9941 4117328 YP_644558.1 CDS Rxyl_1787 NC_008148.1 1809982 1810572 D PFAM: Uracil-DNA glycosylase superfamily; KEGG: sme:SMb21448 putative DNA polymerase related protein; uracil-DNA glycosylase superfamily protein 1809982..1810572 Rubrobacter xylanophilus DSM 9941 4117329 YP_644559.1 CDS Rxyl_1788 NC_008148.1 1810731 1811552 D PFAM: transposase, IS4; KEGG: sru:SRU_0356 IS982 family transposase; IS4 family transposase 1810731..1811552 Rubrobacter xylanophilus DSM 9941 4117330 YP_644560.1 CDS Rxyl_1789 NC_008148.1 1811549 1812082 D TIGRFAM: YbhB and YbcL; PFAM: PEBP; KEGG: pho:PH1269 hypothetical protein; PBP family phospholipid-binding protein 1811549..1812082 Rubrobacter xylanophilus DSM 9941 4117331 YP_644561.1 CDS Rxyl_1790 NC_008148.1 1812127 1816410 R KEGG: mhu:Mhun_1511 hypothetical protein; superfamily I DNA/RNA helicase complement(1812127..1816410) Rubrobacter xylanophilus DSM 9941 4117332 YP_644562.1 CDS Rxyl_1791 NC_008148.1 1816394 1818505 R KEGG: noc:Noc_2196 adenine-specific DNA methylase containing a Zn-ribbon-like; adenine-specific DNA methylase complement(1816394..1818505) Rubrobacter xylanophilus DSM 9941 4117333 YP_644563.1 CDS Rxyl_1792 NC_008148.1 1818507 1819103 R PFAM: regulatory protein, TetR; KEGG: bcl:ABC0634 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1818507..1819103) Rubrobacter xylanophilus DSM 9941 4117334 YP_644564.1 CDS Rxyl_1793 NC_008148.1 1819249 1819878 D PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: tfu:Tfu_3027 putative reductase; reduced coenzyme F420:NADP oxidoreductase 1819249..1819878 Rubrobacter xylanophilus DSM 9941 4117335 YP_644565.1 CDS Rxyl_1794 NC_008148.1 1819904 1820791 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bsu:BG11852 similar to unknown proteins from B. subtilis; glyoxalase/bleomycin resistance protein/dioxygenase 1819904..1820791 Rubrobacter xylanophilus DSM 9941 4117336 YP_644566.1 CDS Rxyl_1795 NC_008148.1 1820847 1821185 R PFAM: Na+/H+ antiporter subunit; KEGG: tma:TM1207 putative multicomponent Na+:H+ antiporter subunit G; Na+/H+ antiporter subunit complement(1820847..1821185) Rubrobacter xylanophilus DSM 9941 4117337 YP_644567.1 CDS Rxyl_1796 NC_008148.1 1821185 1821451 R PFAM: multiple resistance and pH regulation protein F; KEGG: tcx:Tcr_0059 multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F complement(1821185..1821451) Rubrobacter xylanophilus DSM 9941 4117338 YP_644568.1 CDS Rxyl_1797 NC_008148.1 1821471 1821983 R PFAM: cation antiporter; KEGG: sme:SMc00055 putative cation efflux system protein; cation antiporter complement(1821471..1821983) Rubrobacter xylanophilus DSM 9941 4117339 YP_644569.1 CDS Rxyl_1798 NC_008148.1 1821980 1823389 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: bha:BH1316 Na+/H+ antiporter; NADH dehydrogenase (quinone) complement(1821980..1823389) Rubrobacter xylanophilus DSM 9941 4117340 YP_644570.1 CDS Rxyl_1799 NC_008148.1 1823386 1823823 R PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: bha:BH1317 Na+/H+ antiporter; NADH-ubiquinone oxidoreductase subunit 4L complement(1823386..1823823) Rubrobacter xylanophilus DSM 9941 4117341 YP_644571.1 CDS Rxyl_1800 NC_008148.1 1823820 1826645 R PFAM: NADH/Ubiquinone/plastoquinone (complex I) Na+/H+ antiporter MnhB subunit-related protein; KEGG: tbd:Tbd_0497 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) complement(1823820..1826645) Rubrobacter xylanophilus DSM 9941 4117244 YP_644572.1 CDS Rxyl_1801 NC_008148.1 1827069 1828988 R TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase Heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase E1-E2 ATPase-associated region; KEGG: hma:pNG6019 cadmium transporting P-type ATPase; heavy metal translocating P-type ATPase complement(1827069..1828988) Rubrobacter xylanophilus DSM 9941 4117245 YP_644573.1 CDS Rxyl_1802 NC_008148.1 1829044 1829259 R PFAM: Heavy metal transport/detoxification protein; KEGG: cgb:cg1328 putative copper chaperone; heavy metal transport/detoxification protein complement(1829044..1829259) Rubrobacter xylanophilus DSM 9941 4117246 YP_644574.1 CDS Rxyl_1803 NC_008148.1 1829382 1830131 R PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: cef:CE1525 putative transcription regulator; Crp/FNR family transcriptional regulator complement(1829382..1830131) Rubrobacter xylanophilus DSM 9941 4117247 YP_644575.1 CDS Rxyl_1804 NC_008148.1 1830277 1830588 D PFAM: protein of unknown function DUF77; KEGG: mst:Msp_0693 hypothetical protein; hypothetical protein 1830277..1830588 Rubrobacter xylanophilus DSM 9941 4117248 YP_644576.1 CDS Rxyl_1805 NC_008148.1 1830667 1832241 R KEGG: mta:Moth_0594 metal dependent phosphohydrolase; TIGRFAM: uncharacterized domain HDIG; PFAM: metal-dependent phosphohydrolase, HD subdomain metal-dependent phosphohydrolase, 7TM intracellular region; SMART: Metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase complement(1830667..1832241) Rubrobacter xylanophilus DSM 9941 4117249 YP_644577.1 CDS Rxyl_1806 NC_008148.1 1832373 1834328 R KEGG: tfu:Tfu_2895 peptidase M41, FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41 AAA ATPase, central region peptidase M41, FtsH extracellular; SMART: ATPase; ATP-dependent metalloprotease FtsH complement(1832373..1834328) Rubrobacter xylanophilus DSM 9941 4117250 YP_644578.1 CDS Rxyl_1807 NC_008148.1 1834377 1834979 R KEGG: tth:TTC1218 transcriptional regulator; hypothetical protein complement(1834377..1834979) Rubrobacter xylanophilus DSM 9941 4117251 YP_644579.1 CDS Rxyl_1808 NC_008148.1 1834987 1835451 R hypothetical protein complement(1834987..1835451) Rubrobacter xylanophilus DSM 9941 4117252 YP_644580.1 CDS Rxyl_1809 NC_008148.1 1835445 1835840 R hypothetical protein complement(1835445..1835840) Rubrobacter xylanophilus DSM 9941 4117253 YP_644581.1 CDS Rxyl_1810 NC_008148.1 1835864 1836133 R hypothetical protein complement(1835864..1836133) Rubrobacter xylanophilus DSM 9941 4117254 YP_644582.1 CDS Rxyl_1811 NC_008148.1 1836328 1836957 R PFAM: regulatory protein, TetR; KEGG: mpa:MAP4291c hypothetical protein; TetR family transcriptional regulator complement(1836328..1836957) Rubrobacter xylanophilus DSM 9941 4117255 YP_644583.1 CDS Rxyl_1812 NC_008148.1 1837186 1837827 R PFAM: Ferritin and Dps; KEGG: rpa:RPA1274 possible Dps protein family starvation-inducible DNA-binding protein; Ferritin and Dps complement(1837186..1837827) Rubrobacter xylanophilus DSM 9941 4117256 YP_644584.1 CDS Rxyl_1813 NC_008148.1 1838353 1839267 R PFAM: sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 sigma-70 region 1.2; KEGG: mta:Moth_0624 sigma 38 (RpoS); RNA polymerase sigma-28 subunit complement(1838353..1839267) Rubrobacter xylanophilus DSM 9941 4117257 YP_644585.1 CDS Rxyl_1814 NC_008148.1 1839627 1840106 R KEGG: reu:Reut_B4087 cupin region; hypothetical protein complement(1839627..1840106) Rubrobacter xylanophilus DSM 9941 4117258 YP_644586.1 CDS Rxyl_1815 NC_008148.1 1840174 1840392 R hypothetical protein complement(1840174..1840392) Rubrobacter xylanophilus DSM 9941 4117259 YP_644587.1 CDS Rxyl_1816 NC_008148.1 1840423 1840854 R hypothetical protein complement(1840423..1840854) Rubrobacter xylanophilus DSM 9941 4117260 YP_644588.1 CDS Rxyl_1817 NC_008148.1 1841024 1842214 D KEGG: pho:PH0137 hypothetical protein; hypothetical protein 1841024..1842214 Rubrobacter xylanophilus DSM 9941 4117261 YP_644589.1 CDS Rxyl_1818 NC_008148.1 1842381 1843640 D PFAM: FAD dependent oxidoreductase; KEGG: fra:Francci3_3470 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase 1842381..1843640 Rubrobacter xylanophilus DSM 9941 4117262 YP_644590.1 CDS Rxyl_1819 NC_008148.1 1843888 1844436 D PFAM: UspA; KEGG: bte:BTH_II1567 universal stress protein family; hypothetical protein 1843888..1844436 Rubrobacter xylanophilus DSM 9941 4117458 YP_644591.1 CDS Rxyl_1821 NC_008148.1 1845085 1845996 R PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: sco:SCO5994 integral membrane cytochrome biogenesis protein; cytochrome c biogenesis protein, transmembrane region complement(1845085..1845996) Rubrobacter xylanophilus DSM 9941 4117459 YP_644592.1 CDS Rxyl_1822 NC_008148.1 1845989 1846681 R PFAM: DSBA oxidoreductase; KEGG: sco:SCO5993 hypothetical protein; DSBA oxidoreductase complement(1845989..1846681) Rubrobacter xylanophilus DSM 9941 4117460 YP_644593.1 CDS Rxyl_1823 NC_008148.1 1846735 1848444 R KEGG: cdi:DIP2171 hypothetical protein; hypothetical protein complement(1846735..1848444) Rubrobacter xylanophilus DSM 9941 4117461 YP_644594.1 CDS Rxyl_1824 NC_008148.1 1848575 1848934 R hypothetical protein complement(1848575..1848934) Rubrobacter xylanophilus DSM 9941 4117462 YP_644595.1 CDS Rxyl_1825 NC_008148.1 1849066 1849902 D PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: gsu:GSU2958 thiol:disulfide interchange protein, putative; cytochrome c biogenesis protein, transmembrane region 1849066..1849902 Rubrobacter xylanophilus DSM 9941 4117463 YP_644596.1 CDS Rxyl_1826 NC_008148.1 1850004 1851377 R PFAM: beta-lactamase-like Rhodanese-like; KEGG: gsu:GSU2309 metallo-beta-lactamase family protein; beta-lactamase-like protein complement(1850004..1851377) Rubrobacter xylanophilus DSM 9941 4117464 YP_644597.1 CDS Rxyl_1827 NC_008148.1 1851382 1851789 R PFAM: protein of unknown function DUF302; KEGG: hma:pNG6027 hypothetical protein; hypothetical protein complement(1851382..1851789) Rubrobacter xylanophilus DSM 9941 4117465 YP_644598.1 CDS Rxyl_1828 NC_008148.1 1851820 1852038 R hypothetical protein complement(1851820..1852038) Rubrobacter xylanophilus DSM 9941 4117466 YP_644599.1 CDS Rxyl_1829 NC_008148.1 1852413 1853189 D PFAM: protein of unknown function DUF81; KEGG: cef:CE0317 hypothetical protein; hypothetical protein 1852413..1853189 Rubrobacter xylanophilus DSM 9941 4117467 YP_644600.1 CDS Rxyl_1830 NC_008148.1 1853688 1855223 D PFAM: multicopper oxidase, type 1 multicopper oxidase, type 2 multicopper oxidase, type 3; KEGG: nfa:pnf1230 putative multicopper oxidase; multicopper oxidase, type 3 1853688..1855223 Rubrobacter xylanophilus DSM 9941 4117468 YP_644601.1 CDS Rxyl_1831 NC_008148.1 1855315 1855665 D TIGRFAM: thioredoxin; PFAM: glutaredoxin Thioredoxin domain; KEGG: mta:Moth_0927 thioredoxin; thioredoxin 1855315..1855665 Rubrobacter xylanophilus DSM 9941 4117469 YP_644602.1 CDS Rxyl_1832 NC_008148.1 1855662 1856273 D PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: chy:CHY_0552 hypothetical protein; type 11 methyltransferase 1855662..1856273 Rubrobacter xylanophilus DSM 9941 4117470 YP_644603.1 CDS Rxyl_1835 NC_008148.1 1857606 1858514 R KEGG: mta:Moth_1737 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase complement(1857606..1858514) Rubrobacter xylanophilus DSM 9941 4117471 YP_644604.1 CDS Rxyl_1836 NC_008148.1 1858549 1859874 R KEGG: mma:MM0197 hypothetical protein; hypothetical protein complement(1858549..1859874) Rubrobacter xylanophilus DSM 9941 4117472 YP_644605.1 CDS Rxyl_1837 NC_008148.1 1859888 1861981 R KEGG: bfr:BF0638 hypothetical protein; hypothetical protein complement(1859888..1861981) Rubrobacter xylanophilus DSM 9941 4117473 YP_644606.1 CDS Rxyl_1838 NC_008148.1 1862119 1862439 R hypothetical protein complement(1862119..1862439) Rubrobacter xylanophilus DSM 9941 4117474 YP_644607.1 CDS Rxyl_1839 NC_008148.1 1862533 1862802 R KEGG: bte:BTH_I2730 plasmid related protein; plasmid-like protein complement(1862533..1862802) Rubrobacter xylanophilus DSM 9941 4117475 YP_644608.1 CDS Rxyl_1840 NC_008148.1 1862802 1863341 R PFAM: zinc finger, SWIM-type; SWIM-type zinc finger domain-containing protein complement(1862802..1863341) Rubrobacter xylanophilus DSM 9941 4117476 YP_644609.1 CDS Rxyl_1841 NC_008148.1 1864579 1865031 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ctc:CTC02427 putative crotonase; short chain enoyl-CoA hydratase complement(1864579..1865031) Rubrobacter xylanophilus DSM 9941 4117477 YP_644610.1 CDS Rxyl_1842 NC_008148.1 1865241 1866323 R PFAM: Thiolase 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; KEGG: mag:amb2989 acetyl-CoA acetyltransferase; acetyl-CoA C-acetyltransferase complement(1865241..1866323) Rubrobacter xylanophilus DSM 9941 4117400 YP_644611.1 CDS Rxyl_1844 NC_008148.1 1867222 1867398 R hypothetical protein complement(1867222..1867398) Rubrobacter xylanophilus DSM 9941 4117401 YP_644612.1 CDS Rxyl_1845 NC_008148.1 1867573 1868895 R KEGG: mma:MM0676 coenzyme F390 synthetase; phenylacetate-CoA ligase complement(1867573..1868895) Rubrobacter xylanophilus DSM 9941 4117402 YP_644613.1 CDS Rxyl_1846 NC_008148.1 1868909 1869817 R KEGG: eba:c1A97 putative subunit of acetophenone carboxylase; hypothetical protein complement(1868909..1869817) Rubrobacter xylanophilus DSM 9941 4117403 YP_644614.1 CDS Rxyl_1847 NC_008148.1 1869819 1871879 R PFAM: Hydantoinase B/oxoprolinase; KEGG: eba:c1A100 possible subunit of acetophenone carboxylase; hydantoinase B/oxoprolinase complement(1869819..1871879) Rubrobacter xylanophilus DSM 9941 4117404 YP_644615.1 CDS Rxyl_1848 NC_008148.1 1871896 1874076 R PFAM: Hydantoinase/oxoprolinase Hydantoinaseoxoprolinase-like; KEGG: eba:c1A102 possible subunit of acetophenone carboxylase; 5-oxoprolinase complement(1871896..1874076) Rubrobacter xylanophilus DSM 9941 4117405 YP_644616.1 CDS Rxyl_1849 NC_008148.1 1874060 1874431 R KEGG: eba:c1A200 possible subunit of acetophenone carboxylase; putative subunit of acetophenone carboxylase complement(1874060..1874431) Rubrobacter xylanophilus DSM 9941 4117406 YP_644617.1 CDS Rxyl_1850 NC_008148.1 1874433 1876376 R PFAM: Hydantoinase/oxoprolinase Hydantoinaseoxoprolinase-like; KEGG: eba:c1A105 possible subunit of acetophenone carboxylase; hydantoinase/oxoprolinase complement(1874433..1876376) Rubrobacter xylanophilus DSM 9941 4117407 YP_644618.1 CDS Rxyl_1851 NC_008148.1 1876471 1877820 R KEGG: mta:Moth_0513 phenylacetate--CoA ligase; phenylacetate-CoA ligase complement(1876471..1877820) Rubrobacter xylanophilus DSM 9941 4117408 YP_644619.1 CDS Rxyl_1852 NC_008148.1 1877841 1878557 R PFAM: regulatory protein GntR, HTH GntR-like; KEGG: pca:Pcar_2500 transcriptional regulator-like; GntR family transcriptional regulator complement(1877841..1878557) Rubrobacter xylanophilus DSM 9941 4117409 YP_644620.1 CDS Rxyl_1854 NC_008148.1 1880156 1881433 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(1880156..1881433) Rubrobacter xylanophilus DSM 9941 4117410 YP_644621.1 CDS Rxyl_1855 NC_008148.1 1881436 1881861 R PFAM: Endoribonuclease L-PSP; KEGG: cps:CPS_2046 endoribonuclease, L-PSP family; endoribonuclease L-PSP complement(1881436..1881861) Rubrobacter xylanophilus DSM 9941 4117411 YP_644622.1 CDS Rxyl_1856 NC_008148.1 1881884 1882603 R PFAM: protein of unknown function DUF1028; KEGG: pae:PA5391 hypothetical protein; hypothetical protein complement(1881884..1882603) Rubrobacter xylanophilus DSM 9941 4117412 YP_644623.1 CDS Rxyl_1857 NC_008148.1 1882606 1884057 R PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: cps:CPS_2047 4-hydroxyphenylacetate-3-hydroxylase family protein; 4-hydroxyphenylacetate 3-hydroxylase complement(1882606..1884057) Rubrobacter xylanophilus DSM 9941 4117413 YP_644624.1 CDS Rxyl_1858 NC_008148.1 1884098 1885279 R PFAM: regulatory protein GntR, HTH flavin reductase-like, FMN-binding GntR-like; KEGG: sth:STH1890 putative oxidoreductase; GntR family transcriptional regulator complement(1884098..1885279) Rubrobacter xylanophilus DSM 9941 4117414 YP_644625.1 CDS Rxyl_1861 NC_008148.1 1887627 1887923 R PFAM: transposase IS3/IS911; KEGG: fra:Francci3_1726 transposase IS3/IS911; transposase IS3/IS911 complement(1887627..1887923) Rubrobacter xylanophilus DSM 9941 4117415 YP_644626.1 CDS Rxyl_1863 NC_008148.1 1888536 1889903 R PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: yps:YPTB3580 MFS family metabolite symporter; major facilitator transporter complement(1888536..1889903) Rubrobacter xylanophilus DSM 9941 4117416 YP_644627.1 CDS Rxyl_1865 NC_008148.1 1890362 1891126 R PFAM: carbon monoxide dehydrogenase subunit G; KEGG: mtc:MT0384.1 hypothetical protein; carbon monoxide dehydrogenase subunit G complement(1890362..1891126) Rubrobacter xylanophilus DSM 9941 4117417 YP_644628.1 CDS Rxyl_1866 NC_008148.1 1891143 1891940 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ava:Ava_4328 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1891143..1891940) Rubrobacter xylanophilus DSM 9941 4117418 YP_644629.1 CDS Rxyl_1867 NC_008148.1 1891997 1893520 R PFAM: AMP-dependent synthetase and ligase; KEGG: sme:SMa0150 malonyl-CoA synthase; AMP-dependent synthetase and ligase complement(1891997..1893520) Rubrobacter xylanophilus DSM 9941 4115545 YP_644630.1 CDS Rxyl_1868 NC_008148.1 1893634 1894335 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mbo:Mb0929 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase complement(1893634..1894335) Rubrobacter xylanophilus DSM 9941 4115546 YP_644631.1 CDS Rxyl_1869 NC_008148.1 1894361 1894765 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: tte:TTE2386 lactoylglutathione lyase and related lyases; methylmalonyl-CoA epimerase complement(1894361..1894765) Rubrobacter xylanophilus DSM 9941 4115547 YP_644632.1 CDS Rxyl_1870 NC_008148.1 1894762 1895415 R PFAM: putative cyclase; KEGG: tfu:Tfu_1722 conserved hypothetical protein; putative cyclase complement(1894762..1895415) Rubrobacter xylanophilus DSM 9941 4115548 YP_644633.1 CDS Rxyl_1871 NC_008148.1 1895543 1896406 D PFAM: molybdopterin dehydrogenase, FAD-binding CO dehydrogenase flavoprotein-like; KEGG: rpb:RPB_3094 carbon-monoxide dehydrogenase; molybdopterin dehydrogenase protein 1895543..1896406 Rubrobacter xylanophilus DSM 9941 4115549 YP_644634.1 CDS Rxyl_1872 NC_008148.1 1896396 1898783 D PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: reu:Reut_B3790 aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead:aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; xanthine dehydrogenase, molybdenum binding subunit apoprotein 1896396..1898783 Rubrobacter xylanophilus DSM 9941 4115550 YP_644635.1 CDS Rxyl_1873 NC_008148.1 1898780 1899355 D PFAM: ferredoxin [2Fe-2S]-binding; KEGG: gka:GKP18 carbon monoxide dehydrogenase small chain; (2Fe-2S)-binding protein 1898780..1899355 Rubrobacter xylanophilus DSM 9941 4115551 YP_644636.1 CDS Rxyl_1874 NC_008148.1 1899352 1901679 D PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rpb:RPB_3111 carbon-monoxide dehydrogenase; xanthine dehydrogenase, molybdenum binding subunit apoprotein 1899352..1901679 Rubrobacter xylanophilus DSM 9941 4115552 YP_644637.1 CDS Rxyl_1875 NC_008148.1 1901726 1903105 R PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: dra:DRA0271 sugar transporter, putative; major facilitator transporter complement(1901726..1903105) Rubrobacter xylanophilus DSM 9941 4115553 YP_644638.1 CDS Rxyl_1876 NC_008148.1 1903165 1903911 R PFAM: regulatory protein GntR, HTH GntR-like Helix-turn-helix, type 11; KEGG: cps:CPS_4142 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(1903165..1903911) Rubrobacter xylanophilus DSM 9941 4115554 YP_644639.1 CDS Rxyl_1877 NC_008148.1 1903915 1905075 R PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: cef:CE2777 glutaryl-CoA dehydrogenase; acyl-CoA dehydrogenase-like protein complement(1903915..1905075) Rubrobacter xylanophilus DSM 9941 4115555 YP_644640.1 CDS Rxyl_1878 NC_008148.1 1905494 1906885 D PFAM: Amidase; KEGG: nfa:nfa12060 putative amidase; aspartyl/glutamyl-tRNA amidotransferase subunit A 1905494..1906885 Rubrobacter xylanophilus DSM 9941 4115556 YP_644641.1 CDS Rxyl_1879 NC_008148.1 1907130 1907504 R hypothetical protein complement(1907130..1907504) Rubrobacter xylanophilus DSM 9941 4115557 YP_644642.1 CDS Rxyl_1880 NC_008148.1 1907668 1907991 D hypothetical protein 1907668..1907991 Rubrobacter xylanophilus DSM 9941 4115558 YP_644643.1 CDS Rxyl_1881 NC_008148.1 1908057 1908707 D hypothetical protein 1908057..1908707 Rubrobacter xylanophilus DSM 9941 4115559 YP_644644.1 CDS Rxyl_1882 NC_008148.1 1908704 1909234 D hypothetical protein 1908704..1909234 Rubrobacter xylanophilus DSM 9941 4115560 YP_644645.1 CDS Rxyl_1883 NC_008148.1 1909295 1909576 D hypothetical protein 1909295..1909576 Rubrobacter xylanophilus DSM 9941 4115561 YP_644646.1 CDS Rxyl_1884 NC_008148.1 1909547 1909888 R hypothetical protein complement(1909547..1909888) Rubrobacter xylanophilus DSM 9941 4115562 YP_644647.1 CDS Rxyl_1885 NC_008148.1 1909885 1910115 R hypothetical protein complement(1909885..1910115) Rubrobacter xylanophilus DSM 9941 4115563 YP_644648.1 CDS Rxyl_1886 NC_008148.1 1910105 1910347 R hypothetical protein complement(1910105..1910347) Rubrobacter xylanophilus DSM 9941 4115564 YP_644649.1 CDS Rxyl_1887 NC_008148.1 1910939 1911280 R hypothetical protein complement(1910939..1911280) Rubrobacter xylanophilus DSM 9941 4115565 YP_644650.1 CDS Rxyl_1888 NC_008148.1 1911410 1912381 D PFAM: PfkB; KEGG: ret:RHE_PC00098 probable ribokinase protein; PfkB 1911410..1912381 Rubrobacter xylanophilus DSM 9941 4115566 YP_644651.1 CDS Rxyl_1889 NC_008148.1 1912464 1913507 D PFAM: inner-membrane translocator; KEGG: mlo:mll1013 permease protein of sugar ABC transporter; inner-membrane translocator 1912464..1913507 Rubrobacter xylanophilus DSM 9941 4115567 YP_644652.1 CDS Rxyl_1890 NC_008148.1 1913509 1914564 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0765 Periplasmic sugar-binding proteins; periplasmic binding protein/LacI transcriptional regulator 1913509..1914564 Rubrobacter xylanophilus DSM 9941 4115568 YP_644653.1 CDS Rxyl_1891 NC_008148.1 1914568 1916067 D PFAM: ABC transporter related; SMART: ATPase; KEGG: ava:Ava_2172 ABC transporter-like; ABC transporter-like protein 1914568..1916067 Rubrobacter xylanophilus DSM 9941 4115569 YP_644654.1 CDS Rxyl_1892 NC_008148.1 1916064 1916528 D PFAM: RbsD or FucU transport; KEGG: yps:YPTB3609 putative carbohydrate transport protein; transport protein RbsD/FucU 1916064..1916528 Rubrobacter xylanophilus DSM 9941 4115570 YP_644655.1 CDS Rxyl_1893 NC_008148.1 1916600 1917226 D KEGG: stm:STM3072 putative inner membrane protein; signal transduction histidine kinase LytS 1916600..1917226 Rubrobacter xylanophilus DSM 9941 4115571 YP_644656.1 CDS Rxyl_1894 NC_008148.1 1917295 1918029 D PFAM: cobalt transport protein; KEGG: sth:STH2157 cobalt ABC transporter permease protein; cobalt transport protein 1917295..1918029 Rubrobacter xylanophilus DSM 9941 4115572 YP_644657.1 CDS Rxyl_1895 NC_008148.1 1918026 1919750 D PFAM: ABC transporter related; SMART: ATPase; KEGG: mta:Moth_0707 ABC transporter related; ABC transporter-like protein 1918026..1919750 Rubrobacter xylanophilus DSM 9941 4115573 YP_644658.1 CDS Rxyl_1896 NC_008148.1 1919795 1920730 R PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: sso:SSO2243 purine nucleosidase, putative (IunH-2); inosine/uridine-preferring nucleoside hydrolase complement(1919795..1920730) Rubrobacter xylanophilus DSM 9941 4115574 YP_644659.1 CDS Rxyl_1897 NC_008148.1 1920763 1922100 R hypothetical protein complement(1920763..1922100) Rubrobacter xylanophilus DSM 9941 4115575 YP_644660.1 CDS Rxyl_1898 NC_008148.1 1922280 1923071 R PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: ecs:ECs4349 putative GntR family regulatory protein; GntR family transcriptional regulator complement(1922280..1923071) Rubrobacter xylanophilus DSM 9941 4115576 YP_644661.1 CDS Rxyl_1901 NC_008148.1 1925062 1925814 R hypothetical protein complement(1925062..1925814) Rubrobacter xylanophilus DSM 9941 4115577 YP_644662.1 CDS Rxyl_1902 NC_008148.1 1926205 1926456 D hypothetical protein 1926205..1926456 Rubrobacter xylanophilus DSM 9941 4115578 YP_644663.1 CDS Rxyl_1903 NC_008148.1 1926631 1927056 D hypothetical protein 1926631..1927056 Rubrobacter xylanophilus DSM 9941 4115579 YP_644664.1 CDS Rxyl_1905 NC_008148.1 1928501 1929265 D PFAM: regulatory proteins, IclR; KEGG: sma:SAV5141 putative differentiation regulon (IclR-family transcriptional regulator); IclR family transcriptional regulator 1928501..1929265 Rubrobacter xylanophilus DSM 9941 4115580 YP_644665.1 CDS Rxyl_1906 NC_008148.1 1929330 1930484 R PFAM: peptidase M24; KEGG: pub:SAR11_0853 X-Pro dipeptidase; peptidase M24 complement(1929330..1930484) Rubrobacter xylanophilus DSM 9941 4115581 YP_644666.1 CDS Rxyl_1907 NC_008148.1 1930754 1932118 R PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: sco:SCO2336 putative integral membrane transport protein; general substrate transporter complement(1930754..1932118) Rubrobacter xylanophilus DSM 9941 4115582 YP_644667.1 CDS Rxyl_1908 NC_008148.1 1932229 1932903 R hypothetical protein complement(1932229..1932903) Rubrobacter xylanophilus DSM 9941 4115583 YP_644668.1 CDS Rxyl_1909 NC_008148.1 1932923 1933282 R hypothetical protein complement(1932923..1933282) Rubrobacter xylanophilus DSM 9941 4115525 YP_644669.1 CDS Rxyl_1910 NC_008148.1 1933445 1934191 R KEGG: tth:TTC1216 transposase; hypothetical protein complement(1933445..1934191) Rubrobacter xylanophilus DSM 9941 4115526 YP_644670.1 CDS Rxyl_1911 NC_008148.1 1934362 1934625 R hypothetical protein complement(1934362..1934625) Rubrobacter xylanophilus DSM 9941 4115527 YP_644671.1 CDS Rxyl_1912 NC_008148.1 1934636 1935607 R PFAM: nuclease (SNase-like) membrane-bound metal-dependent hydrolase; KEGG: noc:Noc_A0032 membrane-bound metal-dependent hydrolase; nuclease complement(1934636..1935607) Rubrobacter xylanophilus DSM 9941 4115528 YP_644672.1 CDS Rxyl_1913 NC_008148.1 1935617 1936246 R KEGG: noc:Noc_A0035 hypothetical protein; hypothetical protein complement(1935617..1936246) Rubrobacter xylanophilus DSM 9941 4115529 YP_644673.1 CDS Rxyl_1914 NC_008148.1 1936317 1936565 R hypothetical protein complement(1936317..1936565) Rubrobacter xylanophilus DSM 9941 4115530 YP_644674.1 CDS Rxyl_1915 NC_008148.1 1936574 1936849 R hypothetical protein complement(1936574..1936849) Rubrobacter xylanophilus DSM 9941 4115531 YP_644675.1 CDS Rxyl_1916 NC_008148.1 1936846 1937193 R hypothetical protein complement(1936846..1937193) Rubrobacter xylanophilus DSM 9941 4115532 YP_644676.1 CDS Rxyl_1917 NC_008148.1 1937246 1939525 R KEGG: mta:Moth_1807 hypothetical protein; hypothetical protein complement(1937246..1939525) Rubrobacter xylanophilus DSM 9941 4115533 YP_644677.1 CDS Rxyl_1918 NC_008148.1 1939538 1940167 R KEGG: ade:Adeh_0244 LigA; SOS-response transcriptional repressor, LexA complement(1939538..1940167) Rubrobacter xylanophilus DSM 9941 4115534 YP_644678.1 CDS Rxyl_1919 NC_008148.1 1940261 1940914 D KEGG: sma:SAV1204 putative IS630 family transposase; hypothetical protein 1940261..1940914 Rubrobacter xylanophilus DSM 9941 4115535 YP_644679.1 CDS Rxyl_1920 NC_008148.1 1940914 1941510 D hypothetical protein 1940914..1941510 Rubrobacter xylanophilus DSM 9941 4115536 YP_644680.1 CDS Rxyl_1921 NC_008148.1 1941641 1942063 D hypothetical protein 1941641..1942063 Rubrobacter xylanophilus DSM 9941 4115537 YP_644681.1 CDS Rxyl_1922 NC_008148.1 1942060 1945314 D KEGG: sth:STH1885 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP-like nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: Phosphoesterase PHP-like; DNA polymerase III subunit alpha 1942060..1945314 Rubrobacter xylanophilus DSM 9941 4115538 YP_644682.1 CDS Rxyl_1923 NC_008148.1 1945348 1945545 D TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Prophage CP4-57 regulatory; KEGG: cjr:CJE0545 DNA binding domain, excisionase family; phage transcriptional regulator AlpA 1945348..1945545 Rubrobacter xylanophilus DSM 9941 4115539 YP_644683.1 CDS Rxyl_1924 NC_008148.1 1945542 1945955 R hypothetical protein complement(1945542..1945955) Rubrobacter xylanophilus DSM 9941 4115540 YP_644684.1 CDS Rxyl_1925 NC_008148.1 1945990 1946268 R hypothetical protein complement(1945990..1946268) Rubrobacter xylanophilus DSM 9941 4115541 YP_644685.1 CDS Rxyl_1926 NC_008148.1 1946253 1946477 R hypothetical protein complement(1946253..1946477) Rubrobacter xylanophilus DSM 9941 4115542 YP_644686.1 CDS Rxyl_1927 NC_008148.1 1946710 1947849 D PFAM: phage integrase; KEGG: mta:Moth_1796 phage integrase; phage integrase 1946710..1947849 Rubrobacter xylanophilus DSM 9941 4115543 YP_644687.1 CDS Rxyl_1928 NC_008148.1 1948079 1948870 R KEGG: plt:Plut_0297 hypothetical protein; hypothetical protein complement(1948079..1948870) Rubrobacter xylanophilus DSM 9941 4115544 YP_644688.1 CDS Rxyl_1929 NC_008148.1 1948863 1951274 R KEGG: ade:Adeh_1447 ATP-dependent protease, putative; ATP-dependent protease complement(1948863..1951274) Rubrobacter xylanophilus DSM 9941 4115779 YP_644689.1 CDS Rxyl_1930 NC_008148.1 1951391 1951888 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: chy:CHY_2559 low molecular weight protein-tyrosine-phosphatase; protein tyrosine phosphatase 1951391..1951888 Rubrobacter xylanophilus DSM 9941 4115780 YP_644690.1 CDS Rxyl_1931 NC_008148.1 1951882 1953360 R PFAM: sugar transferase; KEGG: noc:Noc_1508 undecaprenyl-phosphate galactosephosphotransferase; undecaprenyl-phosphate galactosephosphotransferase complement(1951882..1953360) Rubrobacter xylanophilus DSM 9941 4115781 YP_644691.1 CDS Rxyl_1932 NC_008148.1 1953631 1954365 D PFAM: polysaccharide deacetylase; KEGG: sma:SAV5355 putative polysaccharide deacetylase; polysaccharide deacetylase 1953631..1954365 Rubrobacter xylanophilus DSM 9941 4115782 YP_644692.1 CDS Rxyl_1933 NC_008148.1 1954307 1955350 R KEGG: sme:SMb21237 putative enzyme, C-terminal domain similar to sulfotransferase protein; sulfotransferase-like protein complement(1954307..1955350) Rubrobacter xylanophilus DSM 9941 4115783 YP_644693.1 CDS Rxyl_1934 NC_008148.1 1955435 1956517 D KEGG: bld:BLi02095 YwoF; hypothetical protein 1955435..1956517 Rubrobacter xylanophilus DSM 9941 4115784 YP_644694.1 CDS Rxyl_1935 NC_008148.1 1956607 1957683 D KEGG: mma:MM0066 hypothetical protein; hypothetical protein 1956607..1957683 Rubrobacter xylanophilus DSM 9941 4115785 YP_644695.1 CDS Rxyl_1936 NC_008148.1 1957680 1958567 R PFAM: sulfotransferase; KEGG: gvi:glr0465 unknown protein; sulfotransferase complement(1957680..1958567) Rubrobacter xylanophilus DSM 9941 4115786 YP_644696.1 CDS Rxyl_1937 NC_008148.1 1958564 1959802 R PFAM: glycosyl transferase, group 1; KEGG: fra:Francci3_1304 glycosyl transferase, group 1; group 1 glycosyl transferase complement(1958564..1959802) Rubrobacter xylanophilus DSM 9941 4115787 YP_644697.1 CDS Rxyl_1938 NC_008148.1 1959799 1961004 R PFAM: glycosyl transferase, group 1; KEGG: tte:TTE0660 predicted glycosyltransferase; group 1 glycosyl transferase complement(1959799..1961004) Rubrobacter xylanophilus DSM 9941 4115788 YP_644698.1 CDS Rxyl_1939 NC_008148.1 1960995 1962149 R PFAM: glycosyl transferase, group 1; KEGG: tte:TTE0658 predicted glycosyltransferase; group 1 glycosyl transferase complement(1960995..1962149) Rubrobacter xylanophilus DSM 9941 4115789 YP_644699.1 CDS Rxyl_1940 NC_008148.1 1962146 1963507 R PFAM: O-antigen polymerase; KEGG: dvu:DVUA0048 exopolysaccharide production protein, putative; O-antigen polymerase complement(1962146..1963507) Rubrobacter xylanophilus DSM 9941 4115790 YP_644700.1 CDS Rxyl_1941 NC_008148.1 1963504 1964466 R KEGG: rba:RB10430 hypothetical protein; hypothetical protein complement(1963504..1964466) Rubrobacter xylanophilus DSM 9941 4115791 YP_644701.1 CDS Rxyl_1942 NC_008148.1 1964463 1965857 R PFAM: polysaccharide biosynthesis protein; KEGG: rru:Rru_A3720 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(1964463..1965857) Rubrobacter xylanophilus DSM 9941 4115792 YP_644702.1 CDS Rxyl_1943 NC_008148.1 1965885 1966604 R KEGG: gka:GK3326 capsular polysaccharide biosynthesis protein; protein-tyrosine kinase complement(1965885..1966604) Rubrobacter xylanophilus DSM 9941 4115793 YP_644703.1 CDS Rxyl_1944 NC_008148.1 1966609 1967370 R PFAM: lipopolysaccharide biosynthesis; KEGG: bce:BC5278 chain length regulator (capsular polysaccharide biosynthesis); lipopolysaccharide biosynthesis protein complement(1966609..1967370) Rubrobacter xylanophilus DSM 9941 4115794 YP_644704.1 CDS Rxyl_1945 NC_008148.1 1967689 1968762 D KEGG: ava:Ava_0292 parallel beta-helix repeat; hypothetical protein 1967689..1968762 Rubrobacter xylanophilus DSM 9941 4115795 YP_644705.1 CDS Rxyl_1946 NC_008148.1 1968777 1969679 R KEGG: vvu:VV12891 hypothetical protein; hypothetical protein complement(1968777..1969679) Rubrobacter xylanophilus DSM 9941 4115796 YP_644706.1 CDS Rxyl_1947 NC_008148.1 1969743 1970582 R PFAM: tyrosinase; KEGG: nmu:Nmul_A2156 tyrosinase/peptidase; tyrosinase complement(1969743..1970582) Rubrobacter xylanophilus DSM 9941 4115797 YP_644707.1 CDS Rxyl_1948 NC_008148.1 1970589 1970951 R TIGRFAM: Twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein complement(1970589..1970951) Rubrobacter xylanophilus DSM 9941 4115740 YP_644708.1 CDS Rxyl_1949 NC_008148.1 1971020 1971748 D hypothetical protein 1971020..1971748 Rubrobacter xylanophilus DSM 9941 4115741 YP_644709.1 CDS Rxyl_1950 NC_008148.1 1971745 1972917 D KEGG: sco:SCO2713 hypothetical protein; hypothetical protein 1971745..1972917 Rubrobacter xylanophilus DSM 9941 4115742 YP_644710.1 CDS Rxyl_1951 NC_008148.1 1972914 1973711 D PFAM: formyl transferase-like; KEGG: mlo:mlr1236 hypothetical protein; formyl transferase-like protein 1972914..1973711 Rubrobacter xylanophilus DSM 9941 4115743 YP_644711.1 CDS Rxyl_1952 NC_008148.1 1973708 1975669 D PFAM: O-antigen polymerase; KEGG: mta:Moth_1253 O-antigen polymerase; O-antigen polymerase 1973708..1975669 Rubrobacter xylanophilus DSM 9941 4115744 YP_644712.1 CDS Rxyl_1953 NC_008148.1 1975641 1976267 R PFAM: regulatory protein, LuxR sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: eca:ECA2028 nitrate/nitrite response regulator; two component LuxR family transcriptional regulator complement(1975641..1976267) Rubrobacter xylanophilus DSM 9941 4115745 YP_644713.1 CDS Rxyl_1954 NC_008148.1 1976524 1976862 D hypothetical protein 1976524..1976862 Rubrobacter xylanophilus DSM 9941 4115746 YP_644714.1 CDS Rxyl_1955 NC_008148.1 1976873 1977679 R PFAM: regulatory proteins, IclR Helix-turn-helix, type 11; KEGG: ttj:TTHB248 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(1976873..1977679) Rubrobacter xylanophilus DSM 9941 4115747 YP_644715.1 CDS Rxyl_1956 NC_008148.1 1977870 1978910 D PFAM: amidohydrolase 2; KEGG: fra:Francci3_2516 amidohydrolase 2; amidohydrolase 2 1977870..1978910 Rubrobacter xylanophilus DSM 9941 4115748 YP_644716.1 CDS Rxyl_1957 NC_008148.1 1978907 1979611 D PFAM: protein of unknown function DUF59; KEGG: fra:Francci3_2515 protein of unknown function DUF59; hypothetical protein 1978907..1979611 Rubrobacter xylanophilus DSM 9941 4115749 YP_644717.1 CDS Rxyl_1958 NC_008148.1 1979608 1980669 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: fra:Francci3_2514 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase GroES-like protein 1979608..1980669 Rubrobacter xylanophilus DSM 9941 4115750 YP_644718.1 CDS Rxyl_1959 NC_008148.1 1980674 1981594 R PFAM: peptidase S58, DmpA; KEGG: sth:STH1900 hypothetical protein; peptidase S58, DmpA complement(1980674..1981594) Rubrobacter xylanophilus DSM 9941 4115751 YP_644719.1 CDS Rxyl_1960 NC_008148.1 1981633 1982469 R KEGG: gme:Gmet_2320 PSP1; hypothetical protein complement(1981633..1982469) Rubrobacter xylanophilus DSM 9941 4115752 YP_644720.1 CDS Rxyl_1961 NC_008148.1 1982472 1983551 R KEGG: gsu:GSU2230 DNA polymerase III, delta prime subunit; DNA polymerase III subunit delta' complement(1982472..1983551) Rubrobacter xylanophilus DSM 9941 4115753 YP_644721.1 CDS Rxyl_1962 NC_008148.1 1983548 1984159 R PFAM: thymidylate kinase; KEGG: dra:DR0111 dTMP kinase; thymidylate kinase complement(1983548..1984159) Rubrobacter xylanophilus DSM 9941 4115754 YP_644722.1 CDS Rxyl_1963 NC_008148.1 1984195 1984959 R PFAM: glutamine amidotransferase class-I peptidase C26; KEGG: sth:STH2933 putative glutamine amidotransferase; peptidase C26 complement(1984195..1984959) Rubrobacter xylanophilus DSM 9941 4115755 YP_644723.1 CDS Rxyl_1964 NC_008148.1 1985130 1987238 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(1985130..1987238) Rubrobacter xylanophilus DSM 9941 4115756 YP_644724.1 CDS Rxyl_1965 NC_008148.1 1987265 1988227 R PFAM: conserved hypothetical protein 374; KEGG: mba:Mbar_A1413 hypothetical protein; hypothetical protein complement(1987265..1988227) Rubrobacter xylanophilus DSM 9941 4115757 YP_644725.1 CDS Rxyl_1966 NC_008148.1 1988224 1989129 R PFAM: UbiA prenyltransferase; KEGG: mta:Moth_1995 UbiA prenyltransferase; UbiA prenyltransferase complement(1988224..1989129) Rubrobacter xylanophilus DSM 9941 4115758 YP_644726.1 CDS Rxyl_1967 NC_008148.1 1989210 1990124 D TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: gka:GK2877 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphtoate prenyltransferase 1989210..1990124 Rubrobacter xylanophilus DSM 9941 4115759 YP_644727.1 CDS Rxyl_1968 NC_008148.1 1990121 1990933 R TIGRFAM: Sec-independent protein translocase TatC; PFAM: Sec-independent periplasmic protein translocase; KEGG: chy:CHY_0863 sec-independent protein translocase protein TatC; Sec-independent protein translocase TatC complement(1990121..1990933) Rubrobacter xylanophilus DSM 9941 4115721 YP_644728.1 CDS Rxyl_1969 NC_008148.1 1990980 1991258 R TIGRFAM: twin-arginine translocation protein, TatA/E family; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: aae:aq_064c putative sec-independent protein translocase protein; twin arginine-targeting protein translocase complement(1990980..1991258) Rubrobacter xylanophilus DSM 9941 4115722 YP_644729.1 CDS Rxyl_1970 NC_008148.1 1991320 1991958 R PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: nar:Saro_0302 TPR repeat protein; tetratricopeptide repeat-containing protein complement(1991320..1991958) Rubrobacter xylanophilus DSM 9941 4115723 YP_644730.1 CDS Rxyl_1971 NC_008148.1 1992009 1993259 R PFAM: amidohydrolase Amidohydrolase 3; KEGG: sma:SAV6652 putative N-ethylammeline chlorohydrolase; amidohydrolase complement(1992009..1993259) Rubrobacter xylanophilus DSM 9941 4115724 YP_644731.1 CDS Rxyl_1972 NC_008148.1 1993261 1994175 R PFAM: Polyprenyl synthetase; KEGG: eba:ebA4512 polyprenyl synthetase, gene: IspB or NE1915; trans-hexaprenyltranstransferase complement(1993261..1994175) Rubrobacter xylanophilus DSM 9941 4115725 YP_644732.1 CDS Rxyl_1973 NC_008148.1 1994222 1994959 R TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: mta:Moth_1280 ubiquinone/menaquinone biosynthesis methyltransferases; demethylmenaquinone methyltransferase complement(1994222..1994959) Rubrobacter xylanophilus DSM 9941 4115726 YP_644733.1 CDS Rxyl_1974 NC_008148.1 1994956 1995372 R hypothetical protein complement(1994956..1995372) Rubrobacter xylanophilus DSM 9941 4115727 YP_644734.1 CDS Rxyl_1975 NC_008148.1 1995369 1996688 R TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: mta:Moth_1244 glutamate-1-semialdehyde-2,1-aminomutase; glutamate-1-semialdehyde 2,1-aminomutase complement(1995369..1996688) Rubrobacter xylanophilus DSM 9941 4115728 YP_644735.1 CDS Rxyl_1976 NC_008148.1 1996711 1997691 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(1996711..1997691) Rubrobacter xylanophilus DSM 9941 4115729 YP_644736.1 CDS Rxyl_1977 NC_008148.1 1997697 1999238 R TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase Uroporphyrinogen III synthase HEM4; KEGG: mta:Moth_1248 uroporphyrin-III C-methyltransferase; uroporphyrinogen-III C-methyltransferase/uroporphyrinogen-III synthase complement(1997697..1999238) Rubrobacter xylanophilus DSM 9941 4115730 YP_644737.1 CDS Rxyl_1978 NC_008148.1 1999235 2000152 R TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; KEGG: mta:Moth_1249 porphobilinogen deaminase; porphobilinogen deaminase complement(1999235..2000152) Rubrobacter xylanophilus DSM 9941 4115731 YP_644738.1 CDS Rxyl_1979 NC_008148.1 2000152 2001420 R PFAM: glutamyl-tRNA reductase Shikimate/quinate 5-dehydrogenase; KEGG: gsu:GSU3284 glutamyl-tRNA reductase; glutamyl-tRNA reductase complement(2000152..2001420) Rubrobacter xylanophilus DSM 9941 4115732 YP_644739.1 CDS Rxyl_1980 NC_008148.1 2001417 2002001 R TIGRFAM: siroheme synthase, N-terminal domain; KEGG: pca:Pcar_3066 siroheme synthase, N-terminal domain protein; precorrin-2 dehydrogenase complement(2001417..2002001) Rubrobacter xylanophilus DSM 9941 4115733 YP_644740.1 CDS Rxyl_1981 NC_008148.1 2002087 2002548 R TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: eli:ELI_06520 molybdopterin cofactor biosynthesis MoaC region; GTP cyclohydrolase subunit MoaC complement(2002087..2002548) Rubrobacter xylanophilus DSM 9941 4115734 YP_644741.1 CDS Rxyl_1982 NC_008148.1 2002739 2004577 R TIGRFAM: selenocysteine-specific translation elongation factor Small GTP-binding protein domain; PFAM: protein synthesis factor, GTP-binding elongation factor Tu, domain 2; KEGG: sth:STH1073 selenocysteine-specific elongation factor; selenocysteine-specific translation elongation factor SelB complement(2002739..2004577) Rubrobacter xylanophilus DSM 9941 4115735 YP_644742.1 CDS Rxyl_1983 NC_008148.1 2004570 2005937 R catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase complement(2004570..2005937) Rubrobacter xylanophilus DSM 9941 4115736 YP_644743.1 CDS Rxyl_1984 NC_008148.1 2006027 2006329 D hypothetical protein 2006027..2006329 Rubrobacter xylanophilus DSM 9941 4115737 YP_644744.1 CDS Rxyl_1985 NC_008148.1 2006326 2006649 R hypothetical protein complement(2006326..2006649) Rubrobacter xylanophilus DSM 9941 4115738 YP_644745.1 CDS Rxyl_1986 NC_008148.1 2006651 2007673 R KEGG: sco:SCO3407 hypothetical protein; hypothetical protein complement(2006651..2007673) Rubrobacter xylanophilus DSM 9941 4115739 YP_644746.1 CDS Rxyl_1987 NC_008148.1 2007762 2007977 D PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dvu:DVU1042 twin-arginine translocation protein TatB; sec-independent translocation protein mttA/Hcf106 2007762..2007977 Rubrobacter xylanophilus DSM 9941 4117575 YP_644747.1 CDS Rxyl_1988 NC_008148.1 2007974 2008861 R KEGG: pca:Pcar_2013 HD domain protein; TIGRFAM: uncharacterized domain HDIG; PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase complement(2007974..2008861) Rubrobacter xylanophilus DSM 9941 4117576 YP_644748.1 CDS Rxyl_1989 NC_008148.1 2008956 2009810 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gka:GK2121 ABC transporter (permease); binding-protein-dependent transport system inner membrane protein complement(2008956..2009810) Rubrobacter xylanophilus DSM 9941 4117577 YP_644749.1 CDS Rxyl_1990 NC_008148.1 2009817 2010737 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ttj:TTHA0355 ABC transporter, permease protein, MalFG family; binding-protein-dependent transport system inner membrane protein complement(2009817..2010737) Rubrobacter xylanophilus DSM 9941 4117578 YP_644750.1 CDS Rxyl_1991 NC_008148.1 2010769 2012136 R PFAM: extracellular solute-binding protein, family 1; KEGG: bha:BH1244 putative multiple sugar transport system substrate-binding protein; extracellular solute-binding protein complement(2010769..2012136) Rubrobacter xylanophilus DSM 9941 4117579 YP_644751.1 CDS Rxyl_1992 NC_008148.1 2012189 2013469 R PFAM: ABC transporter related; SMART: ATPase; KEGG: tfu:Tfu_1763 ABC-type sugar transport systems ATPase components; ABC transporter-like protein complement(2012189..2013469) Rubrobacter xylanophilus DSM 9941 4117580 YP_644752.1 CDS Rxyl_1993 NC_008148.1 2013499 2014659 R PFAM: glycoside hydrolase, family 3-like; KEGG: tfu:Tfu_2486 beta-N-acetylglucosaminidase (putative secreted protein); glycoside hydrolase family protein complement(2013499..2014659) Rubrobacter xylanophilus DSM 9941 4117581 YP_644753.1 CDS Rxyl_1994 NC_008148.1 2014709 2016115 D PFAM: helicase-like type III restriction enzyme, res subunit DEAD/DEAH box helicase-like; KEGG: hal:VNG7093 hypothetical protein; type III restriction enzyme, res subunit 2014709..2016115 Rubrobacter xylanophilus DSM 9941 4117582 YP_644754.1 CDS Rxyl_1995 NC_008148.1 2016117 2017358 D PFAM: protein of unknown function DUF790; KEGG: hal:VNG7092 hypothetical protein; hypothetical protein 2016117..2017358 Rubrobacter xylanophilus DSM 9941 4117583 YP_644755.1 CDS Rxyl_1996 NC_008148.1 2017355 2017804 D hypothetical protein 2017355..2017804 Rubrobacter xylanophilus DSM 9941 4117584 YP_644756.1 CDS Rxyl_1997 NC_008148.1 2018054 2018926 R PFAM: GCN5-related N-acetyltransferase; KEGG: reu:Reut_B4109 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2018054..2018926) Rubrobacter xylanophilus DSM 9941 4117585 YP_644757.1 CDS Rxyl_1998 NC_008148.1 2018929 2020179 R catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase complement(2018929..2020179) Rubrobacter xylanophilus DSM 9941 4117586 YP_644758.1 CDS Rxyl_1999 NC_008148.1 2020219 2021049 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sth:STH2737 glycerophosphodiester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(2020219..2021049) Rubrobacter xylanophilus DSM 9941 4117587 YP_644759.1 CDS Rxyl_2000 NC_008148.1 2021088 2021819 D PFAM: lipolytic enzyme, G-D-S-L; KEGG: ade:Adeh_0068 lipolytic enzyme, G-D-S-L; lipolytic protein 2021088..2021819 Rubrobacter xylanophilus DSM 9941 4117588 YP_644760.1 CDS Rxyl_2001 NC_008148.1 2021797 2024109 R PFAM: peptidase S45, penicillin amidase; KEGG: ttj:TTHA0024 penicillin acylase II precursor; penicillin amidase complement(2021797..2024109) Rubrobacter xylanophilus DSM 9941 4117589 YP_644761.1 CDS Rxyl_2002 NC_008148.1 2024387 2024611 R TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: mle:ML0577 protein-export membrane protein secG; protein translocase subunit secG complement(2024387..2024611) Rubrobacter xylanophilus DSM 9941 4117590 YP_644762.1 CDS Rxyl_2003 NC_008148.1 2024651 2025421 R PFAM: triosephosphate isomerase; KEGG: mta:Moth_0264 triosephosphate isomerase; triosephosphate isomerase complement(2024651..2025421) Rubrobacter xylanophilus DSM 9941 4117591 YP_644763.1 CDS Rxyl_2004 NC_008148.1 2025425 2026603 R PFAM: phosphoglycerate kinase; KEGG: tma:TM0689 phosphoglycerate kinase / triose-phosphate isomerase; phosphoglycerate kinase complement(2025425..2026603) Rubrobacter xylanophilus DSM 9941 4117592 YP_644764.1 CDS Rxyl_2005 NC_008148.1 2026679 2027680 R KEGG: tfu:Tfu_2017 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase complement(2026679..2027680) Rubrobacter xylanophilus DSM 9941 4117593 YP_644765.1 CDS Rxyl_2006 NC_008148.1 2027743 2028423 R PFAM: protein of unknown function DUF199; KEGG: ctc:CTC02493 hypothetical protein; hypothetical protein complement(2027743..2028423) Rubrobacter xylanophilus DSM 9941 4117594 YP_644766.1 CDS Rxyl_2007 NC_008148.1 2028599 2029564 R TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: mta:Moth_0259 hypothetical protein; hypothetical protein complement(2028599..2029564) Rubrobacter xylanophilus DSM 9941 4115897 YP_644767.1 CDS Rxyl_2008 NC_008148.1 2029596 2030555 R PFAM: glutathione S-transferase-like; KEGG: gvi:glr3374 putative glutathione S-transferase; glutathione S-transferase-like protein complement(2029596..2030555) Rubrobacter xylanophilus DSM 9941 4115898 YP_644768.1 CDS Rxyl_2009 NC_008148.1 2030621 2031538 R PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: mta:Moth_0258 uncharacterised P-loop ATPase protein UPF0042; hypothetical protein complement(2030621..2031538) Rubrobacter xylanophilus DSM 9941 4115899 YP_644769.1 CDS Rxyl_2010 NC_008148.1 2031650 2033485 R TIGRFAM: excinuclease ABC, C subunit; PFAM: Excinuclease ABC, C subunit-like excinuclease ABC, C subunit-like UvrB/UvrC protein; KEGG: mta:Moth_0256 excinuclease ABC, C subunit; excinuclease ABC subunit C complement(2031650..2033485) Rubrobacter xylanophilus DSM 9941 4115900 YP_644770.1 CDS Rxyl_2011 NC_008148.1 2033514 2034149 R KEGG: eba:ebA1334 carbon-nitrogen hydrolase:apolipoprotein N-acyltransferase; hypothetical protein complement(2033514..2034149) Rubrobacter xylanophilus DSM 9941 4115901 YP_644771.1 CDS Rxyl_2012 NC_008148.1 2034139 2035638 R PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: bld:BLi02166 hypothetical protein; type I phosphodiesterase/nucleotide pyrophosphatase complement(2034139..2035638) Rubrobacter xylanophilus DSM 9941 4115902 YP_644772.1 CDS Rxyl_2013 NC_008148.1 2035678 2037183 R PFAM: amino acid permease-associated region; KEGG: sma:SAV2243 putative cationic amino acid transporter; amino acid permease-associated protein complement(2035678..2037183) Rubrobacter xylanophilus DSM 9941 4115903 YP_644773.1 CDS Rxyl_2014 NC_008148.1 2037292 2038245 R KEGG: ddi:DDB0190122 hypothetical protein; hypothetical protein complement(2037292..2038245) Rubrobacter xylanophilus DSM 9941 4115904 YP_644774.1 CDS Rxyl_2015 NC_008148.1 2038362 2038823 D hypothetical protein 2038362..2038823 Rubrobacter xylanophilus DSM 9941 4115905 YP_644775.1 CDS Rxyl_2016 NC_008148.1 2038820 2041591 R KEGG: gka:GK3085 excinuclease ABC subunit A; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: ATPase; excinuclease ABC subunit A complement(2038820..2041591) Rubrobacter xylanophilus DSM 9941 4115906 YP_644776.1 CDS Rxyl_2017 NC_008148.1 2041814 2043508 D KEGG: mta:Moth_0207 purine catabolism PurC-like; CdaR family transcriptional regulator 2041814..2043508 Rubrobacter xylanophilus DSM 9941 4115907 YP_644777.1 CDS Rxyl_2018 NC_008148.1 2043649 2045085 D TIGRFAM: ammonium transporter; PFAM: Rh-like protein/ammonium transporter; KEGG: gka:GK1452 ammonium transporter; ammonium transporter 2043649..2045085 Rubrobacter xylanophilus DSM 9941 4115908 YP_644778.1 CDS Rxyl_2019 NC_008148.1 2045193 2045474 D hypothetical protein 2045193..2045474 Rubrobacter xylanophilus DSM 9941 4115909 YP_644779.1 CDS Rxyl_2020 NC_008148.1 2045514 2046326 D PFAM: Abortive infection protein; abortive infection protein 2045514..2046326 Rubrobacter xylanophilus DSM 9941 4115910 YP_644780.1 CDS Rxyl_2021 NC_008148.1 2046323 2048200 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(2046323..2048200) Rubrobacter xylanophilus DSM 9941 4115911 YP_644781.1 CDS Rxyl_2022 NC_008148.1 2048313 2048813 R PFAM: Lytic transglycosylase, catalytic; KEGG: sth:STH852 putative transglycosylase; lytic transglycosylase catalytic subunit complement(2048313..2048813) Rubrobacter xylanophilus DSM 9941 4115912 YP_644782.1 CDS Rxyl_2023 NC_008148.1 2048920 2049540 R PFAM: Dephospho-CoA kinase; KEGG: pcu:pc0222 putative dephospho-CoA kinase; dephospho-CoA kinase complement(2048920..2049540) Rubrobacter xylanophilus DSM 9941 4115913 YP_644783.1 CDS Rxyl_2024 NC_008148.1 2049579 2050814 R PFAM: RNA binding S1; KEGG: tfu:Tfu_1191 RNA binding S1; 30S ribosomal protein S1 complement(2049579..2050814) Rubrobacter xylanophilus DSM 9941 4115914 YP_644784.1 CDS Rxyl_2025 NC_008148.1 2050904 2053435 R KEGG: sth:STH848 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase 5'-3' exonuclease; SMART: Helix-hairpin-helix motif, class 2; DNA polymerase I complement(2050904..2053435) Rubrobacter xylanophilus DSM 9941 4115915 YP_644785.1 CDS Rxyl_2026 NC_008148.1 2053467 2054138 D KEGG: wsu:WS0145 tRNA (guanine-N7-)-methyltransferase; TIGRFAM: conserved hypothetical protein; PFAM: putative methyltransferase Methyltransferase type 11 Methyltransferase type 12; tRNA (guanine-N(7)-)-methyltransferase 2053467..2054138 Rubrobacter xylanophilus DSM 9941 4115838 YP_644786.1 CDS Rxyl_2027 NC_008148.1 2054135 2054560 R TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily; KEGG: pae:PA5329 hypothetical protein; 4-hydroxybenzoyl-CoA thioesterase complement(2054135..2054560) Rubrobacter xylanophilus DSM 9941 4115839 YP_644787.1 CDS Rxyl_2028 NC_008148.1 2054624 2055331 R PFAM: ABC transporter related; SMART: ATPase; KEGG: ttj:TTHA1335 branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein complement(2054624..2055331) Rubrobacter xylanophilus DSM 9941 4115840 YP_644788.1 CDS Rxyl_2029 NC_008148.1 2055334 2056119 R PFAM: ABC transporter related; SMART: ATPase; KEGG: tth:TTC0969 branched-chain amino acid transport ATP-binding protein livG; ABC transporter-like protein complement(2055334..2056119) Rubrobacter xylanophilus DSM 9941 4115841 YP_644789.1 CDS Rxyl_2030 NC_008148.1 2056112 2057269 R PFAM: inner-membrane translocator; KEGG: bpa:BPP2582 putative ABC transport protein, ATP-binding component; inner-membrane translocator complement(2056112..2057269) Rubrobacter xylanophilus DSM 9941 4115842 YP_644790.1 CDS Rxyl_2031 NC_008148.1 2057271 2058236 R PFAM: inner-membrane translocator; KEGG: bms:BR1791 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator complement(2057271..2058236) Rubrobacter xylanophilus DSM 9941 4115843 YP_644791.1 CDS Rxyl_2032 NC_008148.1 2058442 2059698 R PFAM: Extracellular ligand-binding receptor; KEGG: sco:SCO2008 putative branched chain amino acid binding protein; extracellular ligand-binding receptor complement(2058442..2059698) Rubrobacter xylanophilus DSM 9941 4115844 YP_644792.1 CDS Rxyl_2033 NC_008148.1 2060472 2060762 D hypothetical protein 2060472..2060762 Rubrobacter xylanophilus DSM 9941 4115845 YP_644793.1 CDS Rxyl_2035 NC_008148.1 2061315 2061569 R hypothetical protein complement(2061315..2061569) Rubrobacter xylanophilus DSM 9941 4115846 YP_644794.1 CDS Rxyl_2037 NC_008148.1 2063269 2063988 D PFAM: rhodopsin; KEGG: hma:rrnAC3161 bacteriorhodopsin; rhodopsin 2063269..2063988 Rubrobacter xylanophilus DSM 9941 4115847 YP_644795.1 CDS Rxyl_2038 NC_008148.1 2063981 2065234 D PFAM: FAD dependent oxidoreductase Lycopene beta and epsilon cyclase; KEGG: sco:SCO0191 lycopene cyclase; lycopene beta and epsilon cyclase 2063981..2065234 Rubrobacter xylanophilus DSM 9941 4115848 YP_644796.1 CDS Rxyl_2039 NC_008148.1 2065236 2066183 D KEGG: nph:NP0650A brp-like protein 2; hypothetical protein 2065236..2066183 Rubrobacter xylanophilus DSM 9941 4115849 YP_644797.1 CDS Rxyl_2040 NC_008148.1 2066252 2066506 R hypothetical protein complement(2066252..2066506) Rubrobacter xylanophilus DSM 9941 4115850 YP_644798.1 CDS Rxyl_2041 NC_008148.1 2066496 2069882 R biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase complement(2066496..2069882) Rubrobacter xylanophilus DSM 9941 4115851 YP_644799.1 CDS Rxyl_2042 NC_008148.1 2070001 2070537 D PFAM: Inorganic pyrophosphatase; KEGG: sru:SRU_2000 inorganic pyrophosphatase; inorganic diphosphatase 2070001..2070537 Rubrobacter xylanophilus DSM 9941 4115852 YP_644800.1 CDS Rxyl_2043 NC_008148.1 2070595 2070918 D PFAM: transcriptional coactivator/pterin dehydratase; KEGG: mca:MCA0497 pterin-4-alpha-carbinolamine dehydratase; pterin-4-alpha-carbinolamine dehydratase 2070595..2070918 Rubrobacter xylanophilus DSM 9941 4115853 YP_644801.1 CDS Rxyl_2044 NC_008148.1 2070915 2071490 R PFAM: nuclease (SNase-like); KEGG: sth:STH2345 micrococcal nuclease-like protein; nuclease complement(2070915..2071490) Rubrobacter xylanophilus DSM 9941 4115854 YP_644802.1 CDS Rxyl_2045 NC_008148.1 2071541 2072113 R TIGRFAM: Peptidase C56, PfpI; PFAM: ThiJ/PfpI; KEGG: rba:RB4394 proteinase I; peptidase C56, PfpI complement(2071541..2072113) Rubrobacter xylanophilus DSM 9941 4115855 YP_644803.1 CDS Rxyl_2046 NC_008148.1 2072226 2073599 R PFAM: glycoside hydrolase, family 1; KEGG: sco:SCO7558 putative beta-glucosidase; beta-galactosidase complement(2072226..2073599) Rubrobacter xylanophilus DSM 9941 4115856 YP_644804.1 CDS Rxyl_2047 NC_008148.1 2073615 2073911 R hypothetical protein complement(2073615..2073911) Rubrobacter xylanophilus DSM 9941 4115857 YP_644805.1 CDS Rxyl_2048 NC_008148.1 2073927 2075579 R TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: sco:SCO3139 putative sodium:solute symporter; SSS family solute/sodium (Na+) symporter complement(2073927..2075579) Rubrobacter xylanophilus DSM 9941 4115760 YP_644806.1 CDS Rxyl_2049 NC_008148.1 2075700 2075960 D KEGG: vpa:VP2170 putative transglycosylase associated gene; putative transglycosylase associated protein 2075700..2075960 Rubrobacter xylanophilus DSM 9941 4115761 YP_644807.1 CDS Rxyl_2050 NC_008148.1 2075984 2076940 R PFAM: aldo/keto reductase; KEGG: cch:Cag_1232 putative aldo/keto reductase; aldo/keto reductase complement(2075984..2076940) Rubrobacter xylanophilus DSM 9941 4115762 YP_644808.1 CDS Rxyl_2051 NC_008148.1 2077026 2080217 R PFAM: glycoside hydrolase, family 38 glycosyl hydrolases 38-like; KEGG: ret:RHE_PF00487 putative alpha-mannosidase protein; alpha-mannosidase complement(2077026..2080217) Rubrobacter xylanophilus DSM 9941 4115763 YP_644809.1 CDS Rxyl_2052 NC_008148.1 2080376 2081947 D PFAM: AMP-dependent synthetase and ligase; KEGG: chy:CHY_1629 AMP-binding enzyme family protein; AMP-dependent synthetase and ligase 2080376..2081947 Rubrobacter xylanophilus DSM 9941 4115764 YP_644810.1 CDS Rxyl_2053 NC_008148.1 2081952 2082635 D PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: sma:SAV5929 hypothetical protein; phenazine biosynthesis PhzC/PhzF protein 2081952..2082635 Rubrobacter xylanophilus DSM 9941 4115765 YP_644811.1 CDS Rxyl_2054 NC_008148.1 2082632 2083426 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mag:amb0852 enoyl-CoA hydratase/carnithine racemase; short chain enoyl-CoA hydratase 2082632..2083426 Rubrobacter xylanophilus DSM 9941 4115766 YP_644812.1 CDS Rxyl_2055 NC_008148.1 2083426 2083746 D PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: rba:RB12137 hypothetical protein; ATP-dependent Clp protease adaptor protein ClpS 2083426..2083746 Rubrobacter xylanophilus DSM 9941 4115767 YP_644813.1 CDS Rxyl_2056 NC_008148.1 2083939 2085117 R PFAM: Thiolase; KEGG: sth:STH3011 acetyl-CoA acyltransferase; 3-ketoacyl-CoA thiolase complement(2083939..2085117) Rubrobacter xylanophilus DSM 9941 4115768 YP_644814.1 CDS Rxyl_2057 NC_008148.1 2085128 2087500 R PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: sru:SRU_1210 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; 3-hydroxyacyl-CoA dehydrogenase complement(2085128..2087500) Rubrobacter xylanophilus DSM 9941 4115769 YP_644815.1 CDS Rxyl_2058 NC_008148.1 2087497 2087994 R KEGG: dar:Daro_1551 hypothetical protein; hypothetical protein complement(2087497..2087994) Rubrobacter xylanophilus DSM 9941 4115770 YP_644816.1 CDS Rxyl_2059 NC_008148.1 2087987 2088370 R PFAM: transcriptional regulator PadR-like; KEGG: cpe:CPE2510 hypothetical protein; PadR family transcriptional regulator complement(2087987..2088370) Rubrobacter xylanophilus DSM 9941 4115771 YP_644817.1 CDS Rxyl_2060 NC_008148.1 2088363 2090141 R PFAM: AMP-dependent synthetase and ligase; KEGG: sru:SRU_2380 AMP-binding enzyme, putative; AMP-dependent synthetase and ligase complement(2088363..2090141) Rubrobacter xylanophilus DSM 9941 4115772 YP_644818.1 CDS Rxyl_2061 NC_008148.1 2090226 2091440 D PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: cef:CE0723 putative glutaryl-CoA dehydrogenase precursor; acyl-CoA dehydrogenase-like protein 2090226..2091440 Rubrobacter xylanophilus DSM 9941 4115773 YP_644819.1 CDS Rxyl_2062 NC_008148.1 2091577 2092602 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bld:BLi00992 similar to alcohol dehydrogenase; RBL03314; zinc-binding alcohol dehydrogenase 2091577..2092602 Rubrobacter xylanophilus DSM 9941 4115774 YP_644820.1 CDS Rxyl_2063 NC_008148.1 2092679 2093959 R TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: gka:GK0676 isocitrate lyase; isocitrate lyase complement(2092679..2093959) Rubrobacter xylanophilus DSM 9941 4115775 YP_644821.1 CDS Rxyl_2064 NC_008148.1 2094156 2095766 R Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase complement(2094156..2095766) Rubrobacter xylanophilus DSM 9941 4115776 YP_644822.1 CDS Rxyl_2065 NC_008148.1 2096209 2097171 D PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: sth:STH241 LysR family transcriptional regulator; LysR family transcriptional regulator 2096209..2097171 Rubrobacter xylanophilus DSM 9941 4115777 YP_644823.1 CDS Rxyl_2066 NC_008148.1 2097164 2099134 R PFAM: acyltransferase 3; KEGG: lin:lin1329 hypothetical protein; acyltransferase 3 complement(2097164..2099134) Rubrobacter xylanophilus DSM 9941 4115778 YP_644824.1 CDS Rxyl_2067 NC_008148.1 2099319 2100074 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cpe:CPE1877 probable glycerophosphodiester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(2099319..2100074) Rubrobacter xylanophilus DSM 9941 4115161 YP_644825.1 CDS Rxyl_2068 NC_008148.1 2100204 2101298 R PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: pab:PAB2232 multiple sugar transport system ATP-binding protein; ABC transporter-like protein complement(2100204..2101298) Rubrobacter xylanophilus DSM 9941 4115162 YP_644826.1 CDS Rxyl_2069 NC_008148.1 2101291 2102223 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PB00137 putative sugar ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(2101291..2102223) Rubrobacter xylanophilus DSM 9941 4115163 YP_644827.1 CDS Rxyl_2070 NC_008148.1 2102242 2103186 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM0419 multiple sugar transport system permease protein; binding-protein-dependent transport system inner membrane protein complement(2102242..2103186) Rubrobacter xylanophilus DSM 9941 4115164 YP_644828.1 CDS Rxyl_2071 NC_008148.1 2103197 2104612 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 1; KEGG: tma:TM0418 multiple sugar transport system substrate-binding protein; twin-arginine translocation pathway signal protein complement(2103197..2104612) Rubrobacter xylanophilus DSM 9941 4115165 YP_644829.1 CDS Rxyl_2072 NC_008148.1 2104887 2105963 D PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: pca:Pcar_0575 3-isopropylmalate dehydrogenase; isocitrate dehydrogenase (NADP) 2104887..2105963 Rubrobacter xylanophilus DSM 9941 4115166 YP_644830.1 CDS Rxyl_2073 NC_008148.1 2105960 2106439 D KEGG: xcb:XC_3980 hypothetical protein; hypothetical protein 2105960..2106439 Rubrobacter xylanophilus DSM 9941 4115167 YP_644831.1 CDS Rxyl_2074 NC_008148.1 2106436 2107296 R PFAM: aminoglycoside phosphotransferase fructosamine kinase; KEGG: rru:Rru_A3648 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(2106436..2107296) Rubrobacter xylanophilus DSM 9941 4115168 YP_644832.1 CDS Rxyl_2075 NC_008148.1 2107286 2107804 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: tcx:Tcr_0702 protein tyrosine phosphatase; protein tyrosine phosphatase complement(2107286..2107804) Rubrobacter xylanophilus DSM 9941 4115169 YP_644833.1 CDS Rxyl_2076 NC_008148.1 2107845 2108549 R PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: tfu:Tfu_0117 cyclic nucleotide-binding:bacterial regulatory protein, Crp; Crp/FNR family transcriptional regulator complement(2107845..2108549) Rubrobacter xylanophilus DSM 9941 4115170 YP_644834.1 CDS Rxyl_2077 NC_008148.1 2108788 2109120 D hypothetical protein 2108788..2109120 Rubrobacter xylanophilus DSM 9941 4115171 YP_644835.1 CDS Rxyl_2078 NC_008148.1 2109345 2109707 D hypothetical protein 2109345..2109707 Rubrobacter xylanophilus DSM 9941 4115172 YP_644836.1 CDS Rxyl_2079 NC_008148.1 2109899 2110303 R KEGG: dar:Daro_3966 hydrogenase formation HypD protein; hydrogenase maturation factor-like protein complement(2109899..2110303) Rubrobacter xylanophilus DSM 9941 4115173 YP_644837.1 CDS Rxyl_2080 NC_008148.1 2110369 2110602 D KEGG: lxx:Lxx23630 ATP-dependent Clp protease, ATP-binding subunit; ATPase with chaperone activity ATP-binding subunit-like protein 2110369..2110602 Rubrobacter xylanophilus DSM 9941 4115174 YP_644838.1 CDS Rxyl_2081 NC_008148.1 2110732 2110956 D PFAM: glutaredoxin; KEGG: ade:Adeh_1557 glutaredoxin; glutaredoxin 2110732..2110956 Rubrobacter xylanophilus DSM 9941 4115175 YP_644839.1 CDS Rxyl_2082 NC_008148.1 2111063 2112112 D PFAM: phosphofructokinase; KEGG: tfu:Tfu_1037 phosphofructokinase; pyrophosphate-dependent phosphofructokinase 2111063..2112112 Rubrobacter xylanophilus DSM 9941 4115176 YP_644840.1 CDS Rxyl_2083 NC_008148.1 2112452 2113123 D PFAM: ABC transporter related; SMART: ATPase; KEGG: bja:bll3318 ABC transporter ATP-binding protein; ABC transporter-like protein 2112452..2113123 Rubrobacter xylanophilus DSM 9941 4115177 YP_644841.1 CDS Rxyl_2084 NC_008148.1 2113120 2113902 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr6798 ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component 2113120..2113902 Rubrobacter xylanophilus DSM 9941 4115178 YP_644842.1 CDS Rxyl_2085 NC_008148.1 2113899 2114885 D KEGG: bce:BC0745 hydroxymethylpyrimidine-binding protein; hydroxymethylpyrimidine-binding protein 2113899..2114885 Rubrobacter xylanophilus DSM 9941 4115179 YP_644843.1 CDS Rxyl_2087 NC_008148.1 2115045 2116007 R KEGG: ttj:TTHA1767 acetyl-CoA carboxylase carboxyl transferase, alpha subunit (AccA); TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase, alpha subunit; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha complement(2115045..2116007) Rubrobacter xylanophilus DSM 9941 4115180 YP_644844.1 CDS Rxyl_2088 NC_008148.1 2116007 2116780 R TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: pmt:PMT0534 acetyl-CoA carboxylase, beta subunit; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha complement(2116007..2116780) Rubrobacter xylanophilus DSM 9941 4117595 YP_644845.1 CDS Rxyl_2089 NC_008148.1 2116848 2117639 R KEGG: mta:Moth_1336 tryptophan synthase, alpha subunit; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase, alpha chain; tryptophan synthase subunit alpha complement(2116848..2117639) Rubrobacter xylanophilus DSM 9941 4117596 YP_644846.1 CDS Rxyl_2090 NC_008148.1 2117629 2118840 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(2117629..2118840) Rubrobacter xylanophilus DSM 9941 4117597 YP_644847.1 CDS Rxyl_2091 NC_008148.1 2118824 2119444 R PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: gsu:GSU2378 N-(5'phosphoribosyl)anthranilate isomerase; phosphoribosylanthranilate isomerase complement(2118824..2119444) Rubrobacter xylanophilus DSM 9941 4117598 YP_644848.1 CDS Rxyl_2092 NC_008148.1 2119663 2121300 D KEGG: tbd:Tbd_1269 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and response regulator receiver modulation; TIGRFAM: GGDEF domain; PFAM: GGDEF EAL PAS fold-4 PAS fold; SMART: PAS; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2119663..2121300 Rubrobacter xylanophilus DSM 9941 4117599 YP_644849.1 CDS Rxyl_2093 NC_008148.1 2121757 2122536 D PFAM: EAL; KEGG: cvi:CV1578 probable sensory box/GGDEF family protein; diguanylate phosphodiesterase 2121757..2122536 Rubrobacter xylanophilus DSM 9941 4117600 YP_644850.1 CDS Rxyl_2094 NC_008148.1 2122533 2123300 R PFAM: Indole-3-glycerol phosphate synthase; KEGG: dps:DP1622 probable indole-3-glycerol phosphate synthase; indole-3-glycerol phosphate synthase complement(2122533..2123300) Rubrobacter xylanophilus DSM 9941 4117601 YP_644851.1 CDS Rxyl_2095 NC_008148.1 2123297 2124325 R KEGG: nwi:Nwi_1837 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase, family 3; anthranilate phosphoribosyltransferase complement(2123297..2124325) Rubrobacter xylanophilus DSM 9941 4117602 YP_644852.1 CDS Rxyl_2096 NC_008148.1 2124328 2124894 R TIGRFAM: glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; PFAM: glutamine amidotransferase class-I; KEGG: neu:NE0014 panthranilate synthase component II (glutamine amido-transferase) protein; anthranilate synthase, component II complement(2124328..2124894) Rubrobacter xylanophilus DSM 9941 4117603 YP_644853.1 CDS Rxyl_2097 NC_008148.1 2124942 2125892 D PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: eba:ebA4164 ornithine cyclodeaminase; ornithine cyclodeaminase 2124942..2125892 Rubrobacter xylanophilus DSM 9941 4117604 YP_644854.1 CDS Rxyl_2098 NC_008148.1 2125889 2127058 D PFAM: major facilitator superfamily MFS_1; KEGG: rru:Rru_A1180 major facilitator superfamily MFS_1; major facilitator transporter 2125889..2127058 Rubrobacter xylanophilus DSM 9941 4117605 YP_644855.1 CDS Rxyl_2099 NC_008148.1 2127119 2129530 D PFAM: glycoside hydrolase, family 31; KEGG: cyb:CYB_1375 glycosyl hydrolase, family 31; alpha-glucosidase 2127119..2129530 Rubrobacter xylanophilus DSM 9941 4117606 YP_644856.1 CDS Rxyl_2100 NC_008148.1 2129523 2130272 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vpa:VPA0382 putative sorbitol-6-phosphate 2-dehydrogenase; short-chain dehydrogenase/reductase SDR complement(2129523..2130272) Rubrobacter xylanophilus DSM 9941 4117607 YP_644857.1 CDS Rxyl_2101 NC_008148.1 2130272 2130967 R TIGRFAM: HAD-superfamily hydrolase subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: gvi:glr2345 hypothetical protein; HAD family hydrolase complement(2130272..2130967) Rubrobacter xylanophilus DSM 9941 4117608 YP_644858.1 CDS Rxyl_2102 NC_008148.1 2130968 2131387 R hypothetical protein complement(2130968..2131387) Rubrobacter xylanophilus DSM 9941 4117609 YP_644859.1 CDS Rxyl_2103 NC_008148.1 2131380 2131868 R PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bte:BTH_I0312 YbaK/EbsC protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein complement(2131380..2131868) Rubrobacter xylanophilus DSM 9941 4117610 YP_644860.1 CDS Rxyl_2104 NC_008148.1 2131974 2133164 D PFAM: beta-lactamase; KEGG: bja:blr6983 probable 1,4-butanediol diacrylate esterase; beta-lactamase 2131974..2133164 Rubrobacter xylanophilus DSM 9941 4117611 YP_644861.1 CDS Rxyl_2105 NC_008148.1 2133172 2134131 R KEGG: bpm:BURPS1710b_0584 peptide ABC transporter, periplasmic peptide-binding protein; ABC-type dipeptide transport system periplasmic component-like protein complement(2133172..2134131) Rubrobacter xylanophilus DSM 9941 4117612 YP_644862.1 CDS Rxyl_2106 NC_008148.1 2134279 2134773 R hypothetical protein complement(2134279..2134773) Rubrobacter xylanophilus DSM 9941 4117613 YP_644863.1 CDS Rxyl_2107 NC_008148.1 2134864 2136441 R KEGG: ade:Adeh_1166 hypothetical protein; hypothetical protein complement(2134864..2136441) Rubrobacter xylanophilus DSM 9941 4114703 YP_644864.1 CDS Rxyl_2108 NC_008148.1 2136515 2137201 R PFAM: 3-alpha MOSC; KEGG: bsu:BG12946 similar to hypothetical proteins; MOSC domain-containing protein complement(2136515..2137201) Rubrobacter xylanophilus DSM 9941 4114704 YP_644865.1 CDS Rxyl_2109 NC_008148.1 2137210 2137647 R PFAM: regulatory protein, MarR; KEGG: gvi:gll3596 MarR family transcriptional regulatory protein; MarR family transcriptional regulator complement(2137210..2137647) Rubrobacter xylanophilus DSM 9941 4114705 YP_644866.1 CDS Rxyl_2110 NC_008148.1 2137803 2138393 R KEGG: tfu:Tfu_0727 hypothetical protein; hypothetical protein complement(2137803..2138393) Rubrobacter xylanophilus DSM 9941 4114706 YP_644867.1 CDS Rxyl_2111 NC_008148.1 2138457 2139668 R PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bha:BH1951 hypothetical protein; zinc-binding alcohol dehydrogenase complement(2138457..2139668) Rubrobacter xylanophilus DSM 9941 4114707 YP_644868.1 CDS Rxyl_2112 NC_008148.1 2139673 2141925 R TIGRFAM: HAD-superfamily hydrolase subfamily IB, PSPase-like HAD-superfamily subfamily IB, PSPase-like; PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase Haloacid dehalogenase-like hydrolase Male sterility-like; KEGG: fra:Francci3_2276 HAD-superfamily subfamily IB, PSPase-like; HAD family hydrolase complement(2139673..2141925) Rubrobacter xylanophilus DSM 9941 4114708 YP_644869.1 CDS Rxyl_2113 NC_008148.1 2141922 2142521 R PFAM: protein of unknown function DUF205; KEGG: mta:Moth_1321 protein of unknown function DUF205; acyl-phosphate glycerol-3-phosphate acyltransferase complement(2141922..2142521) Rubrobacter xylanophilus DSM 9941 4114709 YP_644870.1 CDS Rxyl_2114 NC_008148.1 2142537 2143991 R PFAM: sulfatase; KEGG: gvi:gll3431 probable sulfatase; sulfatase complement(2142537..2143991) Rubrobacter xylanophilus DSM 9941 4114710 YP_644871.1 CDS Rxyl_2115 NC_008148.1 2143995 2145524 R KEGG: sth:STH1407 anthranilate synthetase component I; TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I and chorismate binding protein Anthranilate synthase component I-like; anthranilate synthase, component I complement(2143995..2145524) Rubrobacter xylanophilus DSM 9941 4114711 YP_644872.1 CDS Rxyl_2116 NC_008148.1 2145508 2146149 R PFAM: phosphoribosyl-AMP cyclohydrolase phosphoribosyl-ATP pyrophosphohydrolase; KEGG: bha:BH3577 phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase; phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase complement(2145508..2146149) Rubrobacter xylanophilus DSM 9941 4114712 YP_644873.1 CDS Rxyl_2117 NC_008148.1 2146140 2146892 R TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis; KEGG: mpa:MAP1299 imidazoleglycerol-phosphate synthase cyclase; imidazole glycerol phosphate synthase subunit hisF complement(2146140..2146892) Rubrobacter xylanophilus DSM 9941 4114713 YP_644874.1 CDS Rxyl_2118 NC_008148.1 2146909 2147754 R KEGG: syn:slr1094 hypothetical protein; hypothetical protein complement(2146909..2147754) Rubrobacter xylanophilus DSM 9941 4114714 YP_644875.1 CDS Rxyl_2119 NC_008148.1 2147751 2149085 R TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase C terminal phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: mta:Moth_2246 phosphoglucosamine mutase; phosphoglucosamine mutase complement(2147751..2149085) Rubrobacter xylanophilus DSM 9941 4114715 YP_644876.1 CDS Rxyl_2120 NC_008148.1 2149149 2149541 R PFAM: ribosomal protein S9; KEGG: bld:BLi00168 ribosomal protein S9; RBL04975; 30S ribosomal protein S9 complement(2149149..2149541) Rubrobacter xylanophilus DSM 9941 4114716 YP_644877.1 CDS rplM NC_008148.1 2149544 2150047 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(2149544..2150047) Rubrobacter xylanophilus DSM 9941 4114717 YP_644878.1 CDS Rxyl_2122 NC_008148.1 2150044 2150706 R PFAM: O-methyltransferase, family 3; KEGG: cvi:CV0193 O-methyltransferase; O-methyltransferase family protein complement(2150044..2150706) Rubrobacter xylanophilus DSM 9941 4114718 YP_644879.1 CDS Rxyl_2123 NC_008148.1 2150688 2151461 R KEGG: nfa:nfa8390 putative tRNA pseudouridine synthase; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A complement(2150688..2151461) Rubrobacter xylanophilus DSM 9941 4114719 YP_644880.1 CDS Rxyl_2124 NC_008148.1 2151458 2152258 R PFAM: cobalt transport protein; KEGG: gka:GK0137 cobalt transporter system (permease); cobalt transport protein complement(2151458..2152258) Rubrobacter xylanophilus DSM 9941 4114720 YP_644881.1 CDS Rxyl_2125 NC_008148.1 2152255 2153073 R PFAM: ABC transporter related; SMART: ATPase; KEGG: sth:STH3044 ABC-type cobalt transport system ATPase component; ABC transporter-like protein complement(2152255..2153073) Rubrobacter xylanophilus DSM 9941 4114721 YP_644882.1 CDS Rxyl_2126 NC_008148.1 2153070 2153801 R PFAM: ABC transporter related; SMART: ATPase; KEGG: sth:STH3045 ABC-type cobalt transport system ATPase component; ABC transporter-like protein complement(2153070..2153801) Rubrobacter xylanophilus DSM 9941 4114722 YP_644883.1 CDS Rxyl_2127 NC_008148.1 2153943 2154308 R PFAM: ribosomal protein L17; KEGG: pca:Pcar_0729 ribosomal protein L17; 50S ribosomal protein L17 complement(2153943..2154308) Rubrobacter xylanophilus DSM 9941 4114723 YP_644884.1 CDS Rxyl_2128 NC_008148.1 2154305 2155246 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(2154305..2155246) Rubrobacter xylanophilus DSM 9941 4114724 YP_644885.1 CDS Rxyl_2129 NC_008148.1 2155301 2155903 R PFAM: ribosomal protein S4 RNA-binding S4; KEGG: sth:STH3048 30S ribosomal protein S4; 30S ribosomal protein S4 complement(2155301..2155903) Rubrobacter xylanophilus DSM 9941 4114725 YP_644886.1 CDS Rxyl_2130 NC_008148.1 2155949 2156356 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(2155949..2156356) Rubrobacter xylanophilus DSM 9941 4114726 YP_644887.1 CDS rpsM NC_008148.1 2156357 2156725 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(2156357..2156725) Rubrobacter xylanophilus DSM 9941 4114727 YP_644888.1 CDS Rxyl_2132 NC_008148.1 2156873 2157094 R TIGRFAM: translation initiation factor IF-1; PFAM: RNA binding S1 S1, IF1 type; KEGG: bcl:ABC0173 translation initiation factor IF-I; translation initiation factor 1 complement(2156873..2157094) Rubrobacter xylanophilus DSM 9941 4114728 YP_644889.1 CDS Rxyl_2133 NC_008148.1 2157159 2157938 R TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: det:DET0496 methionine aminopeptidase, type I; methionine aminopeptidase complement(2157159..2157938) Rubrobacter xylanophilus DSM 9941 4114729 YP_644890.1 CDS Rxyl_2134 NC_008148.1 2157935 2158561 R KEGG: aae:aq_078 adenylate kinase; TIGRFAM: adenylate kinases; PFAM: adenylate kinase; adenylate kinase complement(2157935..2158561) Rubrobacter xylanophilus DSM 9941 4114730 YP_644891.1 CDS Rxyl_2135 NC_008148.1 2158558 2159844 R PFAM: SecY protein; KEGG: mta:Moth_2440 SecY protein; protein translocase subunit secY/sec61 alpha complement(2158558..2159844) Rubrobacter xylanophilus DSM 9941 4114731 YP_644892.1 CDS Rxyl_2136 NC_008148.1 2159863 2160321 R PFAM: ribosomal protein L15; KEGG: sth:STH3056 50S ribosomal protein L15; 50S ribosomal protein L15 complement(2159863..2160321) Rubrobacter xylanophilus DSM 9941 4114732 YP_644893.1 CDS Rxyl_2137 NC_008148.1 2160321 2160506 R PFAM: ribosomal protein L30; KEGG: mpa:MAP4185 50S ribosomal protein L30; 50S ribosomal protein L30 complement(2160321..2160506) Rubrobacter xylanophilus DSM 9941 4114733 YP_644894.1 CDS Rxyl_2138 NC_008148.1 2160503 2161105 R PFAM: ribosomal protein S5 ribosomal protein S5-like; KEGG: ade:Adeh_1929 ribosomal protein S5; 30S ribosomal protein S5 complement(2160503..2161105) Rubrobacter xylanophilus DSM 9941 4114734 YP_644895.1 CDS Rxyl_2139 NC_008148.1 2161128 2161478 R TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: tma:TM1484 50S ribosomal protein L18; 50S ribosomal protein L18 complement(2161128..2161478) Rubrobacter xylanophilus DSM 9941 4114735 YP_644896.1 CDS Rxyl_2140 NC_008148.1 2161500 2162033 R PFAM: ribosomal protein L6; KEGG: mta:Moth_2445 ribosomal protein L6; 50S ribosomal protein L6 complement(2161500..2162033) Rubrobacter xylanophilus DSM 9941 4114736 YP_644897.1 CDS Rxyl_2141 NC_008148.1 2162045 2162443 R PFAM: ribosomal protein S8; KEGG: gka:GK0120 30S ribosomal protein S8; 30S ribosomal protein S8 complement(2162045..2162443) Rubrobacter xylanophilus DSM 9941 4114737 YP_644898.1 CDS Rxyl_2142 NC_008148.1 2162451 2162636 R PFAM: ribosomal protein S14; KEGG: tte:TTE2278 ribosomal protein S14; 30S ribosomal protein S14 complement(2162451..2162636) Rubrobacter xylanophilus DSM 9941 4114738 YP_644899.1 CDS rplE NC_008148.1 2162651 2163193 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(2162651..2163193) Rubrobacter xylanophilus DSM 9941 4114739 YP_644900.1 CDS Rxyl_2144 NC_008148.1 2163186 2163524 R KEGG: bha:BH0145 50S ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW; SMART: KOW (Kyrpides, Ouzounis, Woese) motif; 50S ribosomal protein L24 complement(2163186..2163524) Rubrobacter xylanophilus DSM 9941 4114740 YP_644901.1 CDS Rxyl_2145 NC_008148.1 2163505 2163873 R TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: mta:Moth_2450 ribosomal protein L14; 50S ribosomal protein L14 complement(2163505..2163873) Rubrobacter xylanophilus DSM 9941 4114741 YP_644902.1 CDS Rxyl_2146 NC_008148.1 2163873 2164289 R PFAM: ribosomal protein S17; KEGG: sth:STH3066 30S ribosomal protein S17; 30S ribosomal protein S17 complement(2163873..2164289) Rubrobacter xylanophilus DSM 9941 4114800 YP_644903.1 CDS Rxyl_2147 NC_008148.1 2164293 2164496 R PFAM: ribosomal protein L29; KEGG: pca:Pcar_0709 50S ribosomal protein L29; 50S ribosomal protein L29 complement(2164293..2164496) Rubrobacter xylanophilus DSM 9941 4114801 YP_644904.1 CDS rplP NC_008148.1 2164496 2164912 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(2164496..2164912) Rubrobacter xylanophilus DSM 9941 4114802 YP_644905.1 CDS Rxyl_2149 NC_008148.1 2164916 2165572 R KEGG: mta:Moth_2454 ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3-like KH, type 2; SMART: KH; 30S ribosomal protein S3 complement(2164916..2165572) Rubrobacter xylanophilus DSM 9941 4114803 YP_644906.1 CDS Rxyl_2150 NC_008148.1 2165575 2165958 R TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: ttj:TTHA1687 50S ribosomal protein L22; 50S ribosomal protein L22 complement(2165575..2165958) Rubrobacter xylanophilus DSM 9941 4114804 YP_644907.1 CDS Rxyl_2151 NC_008148.1 2165962 2166243 R TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: tte:TTE2289 ribosomal protein S19; 30S ribosomal protein S19 complement(2165962..2166243) Rubrobacter xylanophilus DSM 9941 4114805 YP_644908.1 CDS rplB NC_008148.1 2166244 2167083 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(2166244..2167083) Rubrobacter xylanophilus DSM 9941 4114806 YP_644909.1 CDS Rxyl_2153 NC_008148.1 2167085 2167372 R PFAM: Ribosomal protein L25/L23; KEGG: chy:CHY_2307 ribosomal protein L23; 50S ribosomal protein L23 complement(2167085..2167372) Rubrobacter xylanophilus DSM 9941 4114807 YP_644910.1 CDS Rxyl_2154 NC_008148.1 2167374 2168009 R PFAM: ribosomal protein L4/L1e; KEGG: pca:Pcar_0702 50S ribosomal protein L4; 50S ribosomal protein L4P complement(2167374..2168009) Rubrobacter xylanophilus DSM 9941 4114808 YP_644911.1 CDS Rxyl_2155 NC_008148.1 2168011 2168628 R PFAM: ribosomal protein L3; KEGG: oih:OB0119 50S ribosomal protein L3; 50S ribosomal protein L3P complement(2168011..2168628) Rubrobacter xylanophilus DSM 9941 4114809 YP_644912.1 CDS Rxyl_2156 NC_008148.1 2168633 2168944 R PFAM: ribosomal protein S10; KEGG: fra:Francci3_0581 ribosomal protein S10; 30S ribosomal protein S10P complement(2168633..2168944) Rubrobacter xylanophilus DSM 9941 4114810 YP_644913.1 CDS Rxyl_2157 NC_008148.1 2168953 2170155 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(2168953..2170155) Rubrobacter xylanophilus DSM 9941 4114811 YP_644914.1 CDS Rxyl_2158 NC_008148.1 2170169 2172316 R TIGRFAM: translation elongation factor G Small GTP-binding protein domain; PFAM: elongation factor G-like protein synthesis factor, GTP-binding elongation factor Tu, domain 2 elongation factor G, domain IV; KEGG: mta:Moth_2463 translation elongation factor G; translation elongation factor 2 (EF-2/EF-G) complement(2170169..2172316) Rubrobacter xylanophilus DSM 9941 4114812 YP_644915.1 CDS Rxyl_2159 NC_008148.1 2172327 2172797 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(2172327..2172797) Rubrobacter xylanophilus DSM 9941 4114813 YP_644916.1 CDS rpsL NC_008148.1 2172811 2173179 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(2172811..2173179) Rubrobacter xylanophilus DSM 9941 4114814 YP_644917.1 CDS Rxyl_2161 NC_008148.1 2173406 2177293 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(2173406..2177293) Rubrobacter xylanophilus DSM 9941 4114815 YP_644918.1 CDS Rxyl_2162 NC_008148.1 2177297 2180722 R KEGG: mta:Moth_2468 DNA-directed RNA polymerase, beta subunit; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2, domain 6 RNA polymerase Rpb2, domain 7 RNA polymerase Rpb2, domain 2 RNA polymerase beta subunit RNA polymerase Rpb2, domain 3; DNA-directed RNA polymerase subunit beta complement(2177297..2180722) Rubrobacter xylanophilus DSM 9941 4114816 YP_644919.1 CDS Rxyl_2163 NC_008148.1 2180863 2181249 R PFAM: ribosomal protein L7/L12; KEGG: aae:aq_1937 50S ribosomal protein L7/L12; 50S ribosomal protein L12 complement(2180863..2181249) Rubrobacter xylanophilus DSM 9941 4114817 YP_644920.1 CDS Rxyl_2164 NC_008148.1 2181302 2181826 R PFAM: ribosomal protein L10; KEGG: mta:Moth_2470 ribosomal protein L10; 50S ribosomal protein L10 complement(2181302..2181826) Rubrobacter xylanophilus DSM 9941 4114818 YP_644921.1 CDS Rxyl_2165 NC_008148.1 2181993 2182685 R PFAM: ribosomal protein L1; KEGG: mta:Moth_2471 ribosomal protein L1; 50S ribosomal protein L1P complement(2181993..2182685) Rubrobacter xylanophilus DSM 9941 4114819 YP_644922.1 CDS Rxyl_2166 NC_008148.1 2182685 2183122 R PFAM: ribosomal protein L11; KEGG: oih:OB0107 50S ribosomal protein L11; 50S ribosomal protein L11 complement(2182685..2183122) Rubrobacter xylanophilus DSM 9941 4114781 YP_644923.1 CDS Rxyl_2167 NC_008148.1 2183169 2183699 R KEGG: pca:Pcar_0689 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG KOW; SMART: NGN KOW (Kyrpides, Ouzounis, Woese) motif; transcription antitermination protein nusG complement(2183169..2183699) Rubrobacter xylanophilus DSM 9941 4114782 YP_644924.1 CDS Rxyl_2168 NC_008148.1 2183714 2183974 R TIGRFAM: SecE subunit of protein translocation complex; PFAM: protein secE/sec61-gamma protein; KEGG: gme:Gmet_0613 SecE subunit of protein translocation complex; protein translocase subunit secE/sec61 gamma complement(2183714..2183974) Rubrobacter xylanophilus DSM 9941 4114783 YP_644925.1 CDS Rxyl_2169 NC_008148.1 2184089 2184238 R PFAM: ribosomal protein L33; KEGG: tfu:Tfu_2667 ribosomal protein L33; 50S ribosomal protein L33 complement(2184089..2184238) Rubrobacter xylanophilus DSM 9941 4114784 YP_644926.1 CDS Rxyl_2170 NC_008148.1 2184311 2185513 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(2184311..2185513) Rubrobacter xylanophilus DSM 9941 4114785 YP_644927.1 CDS Rxyl_2171 NC_008148.1 2186026 2186535 R KEGG: mta:Moth_2480 protein of unknown function DUF901; hypothetical protein complement(2186026..2186535) Rubrobacter xylanophilus DSM 9941 4114786 YP_644928.1 CDS Rxyl_2172 NC_008148.1 2186520 2187233 R TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU) RNA 2-O ribose methyltransferase, substrate binding; KEGG: ade:Adeh_1583 RNA methyltransferase TrmH, group 3; RNA methyl transferase TrmH complement(2186520..2187233) Rubrobacter xylanophilus DSM 9941 4114787 YP_644929.1 CDS Rxyl_2173 NC_008148.1 2187237 2188649 R KEGG: mca:MCA0509 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: cysteinyl-tRNA synthetase, class Ia; cysteinyl-tRNA synthetase complement(2187237..2188649) Rubrobacter xylanophilus DSM 9941 4114788 YP_644930.1 CDS Rxyl_2174 NC_008148.1 2188646 2189941 R TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: tma:TM1351 glutamyl-tRNA synthetase; glutamyl-tRNA synthetase complement(2188646..2189941) Rubrobacter xylanophilus DSM 9941 4114789 YP_644931.1 CDS Rxyl_2175 NC_008148.1 2189931 2190428 R PFAM: MECDP-synthase; KEGG: eba:ebA6542 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS) (MECDP-synthase), gene: IspF or NMB1512; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(2189931..2190428) Rubrobacter xylanophilus DSM 9941 4114790 YP_644932.1 CDS Rxyl_2176 NC_008148.1 2190436 2191131 R TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: gka:GK0081 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(2190436..2191131) Rubrobacter xylanophilus DSM 9941 4114791 YP_644933.1 CDS Rxyl_2177 NC_008148.1 2191132 2192217 R non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair; DNA integrity scanning protein DisA complement(2191132..2192217) Rubrobacter xylanophilus DSM 9941 4114792 YP_644934.1 CDS Rxyl_2178 NC_008148.1 2192214 2193605 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(2192214..2193605) Rubrobacter xylanophilus DSM 9941 4114793 YP_644935.1 CDS Rxyl_2179 NC_008148.1 2193726 2196230 R PFAM: UvrB/UvrC protein AAA ATPase, central region Clp, N terminal ATPase associated with various cellular activities, AAA_5 ATPase AAA-2; SMART: ATPase; KEGG: fra:Francci3_4383 ATPase AAA-2; ATPase complement(2193726..2196230) Rubrobacter xylanophilus DSM 9941 4114794 YP_644936.1 CDS Rxyl_2180 NC_008148.1 2196614 2198092 R KEGG: afu:AF1216 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase, class 1c; lysyl-tRNA synthetase complement(2196614..2198092) Rubrobacter xylanophilus DSM 9941 4114795 YP_644937.1 CDS Rxyl_2181 NC_008148.1 2198133 2198597 R TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB region; KEGG: mta:Moth_0151 GreA/GreB family elongation factor; transcription elongation factor GreA complement(2198133..2198597) Rubrobacter xylanophilus DSM 9941 4114796 YP_644938.1 CDS Rxyl_2182 NC_008148.1 2198695 2199489 R TIGRFAM: transcriptional activator, putative, Baf family; PFAM: Bordetella pertussis Bvg accessory factor; KEGG: ctc:CTC00207 putative transcriptional regulator; pantothenate kinase complement(2198695..2199489) Rubrobacter xylanophilus DSM 9941 4114797 YP_644939.1 CDS Rxyl_2183 NC_008148.1 2199483 2199980 R TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: xoo:XOO2365 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(2199483..2199980) Rubrobacter xylanophilus DSM 9941 4114798 YP_644940.1 CDS Rxyl_2184 NC_008148.1 2199991 2200845 R KEGG: mca:MCA2317 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase complement(2199991..2200845) Rubrobacter xylanophilus DSM 9941 4114799 YP_644941.1 CDS Rxyl_2185 NC_008148.1 2200849 2202732 R KEGG: tfu:Tfu_2895 peptidase M41, FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41 AAA ATPase, central region peptidase M41, FtsH extracellular; SMART: ATPase; FtsH-2 peptidase complement(2200849..2202732) Rubrobacter xylanophilus DSM 9941 4117419 YP_644942.1 CDS Rxyl_2186 NC_008148.1 2202809 2203378 R KEGG: tte:TTE2394 hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase complement(2202809..2203378) Rubrobacter xylanophilus DSM 9941 4117420 YP_644943.1 CDS Rxyl_2187 NC_008148.1 2203375 2204709 R TIGRFAM: tRNA(Ile)-lysidine synthetase-like; PFAM: ExsB PP-loop; KEGG: ade:Adeh_1494 tRNA(Ile)-lysidine synthetase-like; tRNA(Ile)-lysidine synthetase-like protein complement(2203375..2204709) Rubrobacter xylanophilus DSM 9941 4117421 YP_644944.1 CDS Rxyl_2188 NC_008148.1 2204818 2206065 D PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: sth:STH487 alkaline proteinase; peptidase S8/S53 subtilisin kexin sedolisin 2204818..2206065 Rubrobacter xylanophilus DSM 9941 4117422 YP_644945.1 CDS Rxyl_2189 NC_008148.1 2206440 2206823 D hypothetical protein 2206440..2206823 Rubrobacter xylanophilus DSM 9941 4117423 YP_644946.1 CDS Rxyl_2190 NC_008148.1 2207440 2208138 R KEGG: gvi:gll0114 hypothetical protein; hypothetical protein complement(2207440..2208138) Rubrobacter xylanophilus DSM 9941 4117424 YP_644947.1 CDS Rxyl_2191 NC_008148.1 2208308 2208610 R hypothetical protein complement(2208308..2208610) Rubrobacter xylanophilus DSM 9941 4117425 YP_644948.1 CDS Rxyl_2192 NC_008148.1 2208723 2209358 R KEGG: bbr:BB4888 putative reductase; putative reductase complement(2208723..2209358) Rubrobacter xylanophilus DSM 9941 4117426 YP_644949.1 CDS Rxyl_2193 NC_008148.1 2209355 2210464 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(2209355..2210464) Rubrobacter xylanophilus DSM 9941 4117427 YP_644950.1 CDS Rxyl_2194 NC_008148.1 2210532 2211017 D TIGRFAM: SUF system FeS assembly protein; PFAM: nitrogen-fixing NifU-like-like; KEGG: nph:NP0940A homolog to nitrogen fixation protein NifU; SUF system FeS assembly protein 2210532..2211017 Rubrobacter xylanophilus DSM 9941 4117428 YP_644951.1 CDS Rxyl_2195 NC_008148.1 2211014 2211406 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_A3236 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2211014..2211406 Rubrobacter xylanophilus DSM 9941 4117429 YP_644952.1 CDS Rxyl_2196 NC_008148.1 2211506 2212978 D PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: sth:STH1068 putative amidase; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 2211506..2212978 Rubrobacter xylanophilus DSM 9941 4117430 YP_644953.1 CDS Rxyl_2197 NC_008148.1 2212975 2213949 D hypothetical protein 2212975..2213949 Rubrobacter xylanophilus DSM 9941 4117431 YP_644954.1 CDS Rxyl_2198 NC_008148.1 2213937 2214365 R hypothetical protein complement(2213937..2214365) Rubrobacter xylanophilus DSM 9941 4117432 YP_644955.1 CDS Rxyl_2199 NC_008148.1 2214462 2214689 D hypothetical protein 2214462..2214689 Rubrobacter xylanophilus DSM 9941 4117433 YP_644956.1 CDS Rxyl_2200 NC_008148.1 2214703 2215083 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pca:Pcar_1477 lactoylglutathione lyase; glyoxalase/bleomycin resistance protein/dioxygenase complement(2214703..2215083) Rubrobacter xylanophilus DSM 9941 4117434 YP_644957.1 CDS Rxyl_2201 NC_008148.1 2215175 2216770 D PFAM: ABC-1; KEGG: tbd:Tbd_0994 probable ubiquinone biosynthesis protein; hypothetical protein 2215175..2216770 Rubrobacter xylanophilus DSM 9941 4117435 YP_644958.1 CDS Rxyl_2203 NC_008148.1 2217518 2217745 R hypothetical protein complement(2217518..2217745) Rubrobacter xylanophilus DSM 9941 4117436 YP_644959.1 CDS Rxyl_2204 NC_008148.1 2217817 2218581 R KEGG: hal:VNG1681C hypothetical protein; hypothetical protein complement(2217817..2218581) Rubrobacter xylanophilus DSM 9941 4117437 YP_644960.1 CDS ubiA NC_008148.1 2218624 2219475 D UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase 2218624..2219475 Rubrobacter xylanophilus DSM 9941 4117438 YP_644961.1 CDS Rxyl_2206 NC_008148.1 2219472 2220896 D PFAM: FAD dependent oxidoreductase; KEGG: dra:DR0810 dehydrogenase, putative; FAD dependent oxidoreductase 2219472..2220896 Rubrobacter xylanophilus DSM 9941 4117439 YP_644962.1 CDS Rxyl_2207 NC_008148.1 2220893 2222038 D PFAM: aminotransferase, class V; KEGG: rru:Rru_A3040 aminotransferase, class V; class V aminotransferase 2220893..2222038 Rubrobacter xylanophilus DSM 9941 4117440 YP_644963.1 CDS Rxyl_2208 NC_008148.1 2222042 2222284 R hypothetical protein complement(2222042..2222284) Rubrobacter xylanophilus DSM 9941 4117441 YP_644964.1 CDS Rxyl_2209 NC_008148.1 2222327 2222989 R hypothetical protein complement(2222327..2222989) Rubrobacter xylanophilus DSM 9941 4117442 YP_644965.1 CDS Rxyl_2210 NC_008148.1 2222986 2224494 R TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ade:Adeh_3710 drug resistance transporter EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter complement(2222986..2224494) Rubrobacter xylanophilus DSM 9941 4117443 YP_644966.1 CDS Rxyl_2211 NC_008148.1 2224508 2224876 R PFAM: response regulator receiver; KEGG: sth:STH731 two-component response regulator; response regulator receiver protein complement(2224508..2224876) Rubrobacter xylanophilus DSM 9941 4117444 YP_644967.1 CDS Rxyl_2212 NC_008148.1 2225004 2226236 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2225004..2226236 Rubrobacter xylanophilus DSM 9941 4117445 YP_644968.1 CDS Rxyl_2213 NC_008148.1 2226257 2227036 D KEGG: gvi:gll2767 hypothetical protein; hypothetical protein 2226257..2227036 Rubrobacter xylanophilus DSM 9941 4117446 YP_644969.1 CDS Rxyl_2215 NC_008148.1 2227424 2228215 R PFAM: conserved hypothetical protein 730; KEGG: fra:Francci3_3841 conserved hypothetical protein 730; hypothetical protein complement(2227424..2228215) Rubrobacter xylanophilus DSM 9941 4117447 YP_644970.1 CDS Rxyl_2217 NC_008148.1 2228451 2228846 R PFAM: Roadblock/LC7; KEGG: cyb:CYB_1484 roadblock/LC7 domain family; roadblock/LC7 domain-contain protein complement(2228451..2228846) Rubrobacter xylanophilus DSM 9941 4117448 YP_644971.1 CDS Rxyl_2218 NC_008148.1 2229158 2230999 R hypothetical protein complement(2229158..2230999) Rubrobacter xylanophilus DSM 9941 4117449 YP_644972.1 CDS Rxyl_2219 NC_008148.1 2231045 2232181 R PFAM: phage integrase; KEGG: mta:Moth_1796 phage integrase; phage integrase complement(2231045..2232181) Rubrobacter xylanophilus DSM 9941 4117450 YP_644973.1 CDS Rxyl_2220 NC_008148.1 2232411 2232824 R hypothetical protein complement(2232411..2232824) Rubrobacter xylanophilus DSM 9941 4117451 YP_644974.1 CDS Rxyl_2221 NC_008148.1 2232821 2233258 R hypothetical protein complement(2232821..2233258) Rubrobacter xylanophilus DSM 9941 4117452 YP_644975.1 CDS Rxyl_2222 NC_008148.1 2233564 2233962 R hypothetical protein complement(2233564..2233962) Rubrobacter xylanophilus DSM 9941 4117453 YP_644976.1 CDS Rxyl_2223 NC_008148.1 2233962 2234234 R PFAM: zinc finger, SWIM-type; SWIM-type zinc finger domain-containing protein complement(2233962..2234234) Rubrobacter xylanophilus DSM 9941 4117454 YP_644977.1 CDS Rxyl_2225 NC_008148.1 2235911 2237023 D PFAM: Integrase, catalytic region; KEGG: pfo:Pfl_2765 integrase, catalytic region; integrase catalytic subunit 2235911..2237023 Rubrobacter xylanophilus DSM 9941 4117455 YP_644978.1 CDS Rxyl_2226 NC_008148.1 2237020 2237343 R PFAM: transposase IS3/IS911; KEGG: gvi:glr3858 putative transposase; transposase IS3/IS911 complement(2237020..2237343) Rubrobacter xylanophilus DSM 9941 4117456 YP_644979.1 CDS Rxyl_2228 NC_008148.1 2237647 2237991 R hypothetical protein complement(2237647..2237991) Rubrobacter xylanophilus DSM 9941 4117457 YP_644980.1 CDS Rxyl_2229 NC_008148.1 2238225 2238920 R PFAM: HhH-GPD; KEGG: ape:APE0875 A/G-specific adenine glycosylase; HhH-GPD complement(2238225..2238920) Rubrobacter xylanophilus DSM 9941 4115181 YP_644981.1 CDS Rxyl_2230 NC_008148.1 2239015 2240640 D hypothetical protein 2239015..2240640 Rubrobacter xylanophilus DSM 9941 4115182 YP_644982.1 CDS Rxyl_2232 NC_008148.1 2242005 2243222 R PFAM: C-5 cytosine-specific DNA methylase; KEGG: sil:SPO1049 DNA methylase, C-5 cytosine-specific family; DNA (cytosine-5-)-methyltransferase complement(2242005..2243222) Rubrobacter xylanophilus DSM 9941 4115183 YP_644983.1 CDS Rxyl_2233 NC_008148.1 2243219 2244853 R hypothetical protein complement(2243219..2244853) Rubrobacter xylanophilus DSM 9941 4115184 YP_644984.1 CDS Rxyl_2234 NC_008148.1 2245200 2245460 D PFAM: helix-turn-helix motif; KEGG: rsp:RSP_0641 transcriptional regulator, XRE family; XRE family transcriptional regulator 2245200..2245460 Rubrobacter xylanophilus DSM 9941 4115185 YP_644985.1 CDS Rxyl_2235 NC_008148.1 2245488 2245832 R hypothetical protein complement(2245488..2245832) Rubrobacter xylanophilus DSM 9941 4115186 YP_644986.1 CDS Rxyl_2236 NC_008148.1 2247064 2247357 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bja:blr7542 hypothetical protein; antibiotic biosynthesis monooxygenase complement(2247064..2247357) Rubrobacter xylanophilus DSM 9941 4115187 YP_644987.1 CDS Rxyl_2238 NC_008148.1 2247896 2248858 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sco:SCO6303 hydroxylase; fumarylacetoacetate (FAA) hydrolase complement(2247896..2248858) Rubrobacter xylanophilus DSM 9941 4115188 YP_644988.1 CDS Rxyl_2240 NC_008148.1 2249890 2250909 R PFAM: amidohydrolase 2; KEGG: sco:SCO6305 hypothetical protein; aminocarboxymuconate-semialdehyde decarboxylase complement(2249890..2250909) Rubrobacter xylanophilus DSM 9941 4115189 YP_644989.1 CDS Rxyl_2241 NC_008148.1 2250906 2251955 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sco:SCO6308 hydrolase; fumarylacetoacetate (FAA) hydrolase complement(2250906..2251955) Rubrobacter xylanophilus DSM 9941 4115190 YP_644990.1 CDS Rxyl_2242 NC_008148.1 2251975 2253114 R PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: ppu:PP3199 hypothetical protein; hypothetical protein complement(2251975..2253114) Rubrobacter xylanophilus DSM 9941 4115191 YP_644991.1 CDS Rxyl_2243 NC_008148.1 2253126 2254160 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ttj:TTHB250 metapyrocatechase (catechol 2,3-dioxygenase); catechol 2,3-dioxygenase complement(2253126..2254160) Rubrobacter xylanophilus DSM 9941 4115192 YP_644992.1 CDS Rxyl_2244 NC_008148.1 2254293 2255198 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ava:Ava_0824 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2254293..2255198) Rubrobacter xylanophilus DSM 9941 4115193 YP_644993.1 CDS Rxyl_2245 NC_008148.1 2255333 2256121 D PFAM: putative cyclase; KEGG: nph:NP4388A hypothetical protein; putative cyclase 2255333..2256121 Rubrobacter xylanophilus DSM 9941 4115194 YP_644994.1 CDS Rxyl_2249 NC_008148.1 2257700 2258131 D PFAM: Cupin Cupin 2, conserved barrel; KEGG: pho:PH0047 hypothetical protein; cupin 2 barrel domain-containing protein 2257700..2258131 Rubrobacter xylanophilus DSM 9941 4115195 YP_644995.1 CDS Rxyl_2251 NC_008148.1 2259325 2260332 R PFAM: proline racemase; KEGG: bur:Bcep18194_B1660 proline racemase; proline racemase complement(2259325..2260332) Rubrobacter xylanophilus DSM 9941 4115196 YP_644996.1 CDS Rxyl_2254 NC_008148.1 2263617 2265611 R PFAM: NADH:flavin oxidoreductase/NADH oxidase FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pae:PA5398 probable FMN oxidoreductase; NADH:flavin oxidoreductase complement(2263617..2265611) Rubrobacter xylanophilus DSM 9941 4115197 YP_644997.1 CDS Rxyl_2255 NC_008148.1 2265639 2266979 R PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: ecs:ECs0048 putative transport protein; general substrate transporter complement(2265639..2266979) Rubrobacter xylanophilus DSM 9941 4115198 YP_644998.1 CDS Rxyl_2256 NC_008148.1 2267216 2268502 R PFAM: FAD dependent oxidoreductase; KEGG: xcb:XC_1538 D-amino acid dehydrogenase subunit; D-amino acid dehydrogenase small subunit complement(2267216..2268502) Rubrobacter xylanophilus DSM 9941 4115199 YP_644999.1 CDS Rxyl_2257 NC_008148.1 2268519 2269892 R PFAM: aldehyde dehydrogenase; KEGG: bcl:ABC1114 aldehyde dehydrogenase; aldehyde dehydrogenase complement(2268519..2269892) Rubrobacter xylanophilus DSM 9941 4115200 YP_645000.1 CDS Rxyl_2258 NC_008148.1 2269937 2270821 R TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: sma:SAV1731 putative dihydrodipicolinate synthase; dihydrodipicolinate synthase complement(2269937..2270821) Rubrobacter xylanophilus DSM 9941 4115201 YP_645001.1 CDS Rxyl_2259 NC_008148.1 2270834 2271847 R PFAM: proline racemase; KEGG: sco:SCO6293 hypothetical protein; proline racemase complement(2270834..2271847) Rubrobacter xylanophilus DSM 9941 4115202 YP_645002.1 CDS Rxyl_2260 NC_008148.1 2271834 2272532 R PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mlo:mlr7144 transcriptional regulator; GntR family transcriptional regulator complement(2271834..2272532) Rubrobacter xylanophilus DSM 9941 4115203 YP_645003.1 CDS Rxyl_2261 NC_008148.1 2273038 2273295 D hypothetical protein 2273038..2273295 Rubrobacter xylanophilus DSM 9941 4115204 YP_645004.1 CDS Rxyl_2262 NC_008148.1 2273303 2274277 R PFAM: nuclease (SNase-like) membrane-bound metal-dependent hydrolase; KEGG: noc:Noc_A0032 membrane-bound metal-dependent hydrolase; nuclease complement(2273303..2274277) Rubrobacter xylanophilus DSM 9941 4115205 YP_645005.1 CDS Rxyl_2263 NC_008148.1 2274287 2274661 R KEGG: noc:Noc_A0035 hypothetical protein; hypothetical protein complement(2274287..2274661) Rubrobacter xylanophilus DSM 9941 4115206 YP_645006.1 CDS Rxyl_2264 NC_008148.1 2274973 2275233 R hypothetical protein complement(2274973..2275233) Rubrobacter xylanophilus DSM 9941 4115207 YP_645007.1 CDS Rxyl_2265 NC_008148.1 2275230 2275511 R hypothetical protein complement(2275230..2275511) Rubrobacter xylanophilus DSM 9941 4115208 YP_645008.1 CDS Rxyl_2266 NC_008148.1 2275508 2275813 R hypothetical protein complement(2275508..2275813) Rubrobacter xylanophilus DSM 9941 4115209 YP_645009.1 CDS Rxyl_2267 NC_008148.1 2275852 2278077 R KEGG: mta:Moth_1807 hypothetical protein; hypothetical protein complement(2275852..2278077) Rubrobacter xylanophilus DSM 9941 4115210 YP_645010.1 CDS Rxyl_2268 NC_008148.1 2278849 2279184 R hypothetical protein complement(2278849..2279184) Rubrobacter xylanophilus DSM 9941 4115211 YP_645011.1 CDS Rxyl_2269 NC_008148.1 2279190 2280548 R hypothetical protein complement(2279190..2280548) Rubrobacter xylanophilus DSM 9941 4115212 YP_645012.1 CDS Rxyl_2270 NC_008148.1 2280801 2281133 D hypothetical protein 2280801..2281133 Rubrobacter xylanophilus DSM 9941 4115213 YP_645013.1 CDS Rxyl_2271 NC_008148.1 2281758 2283401 D PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: mka:MK0531 acetolactate synthase large subunit; thiamine pyrophosphate enzyme-like TPP binding region 2281758..2283401 Rubrobacter xylanophilus DSM 9941 4115214 YP_645014.1 CDS Rxyl_2272 NC_008148.1 2283414 2284196 D PFAM: putative cyclase; KEGG: nfa:nfa12380 hypothetical protein; putative cyclase 2283414..2284196 Rubrobacter xylanophilus DSM 9941 4115215 YP_645015.1 CDS Rxyl_2273 NC_008148.1 2284193 2285149 R hypothetical protein complement(2284193..2285149) Rubrobacter xylanophilus DSM 9941 4115216 YP_645016.1 CDS Rxyl_2274 NC_008148.1 2285216 2287531 D catalyzes the conversion of salicylyl-CoA to gentisyl-CoA; salicylyl-CoA 5-hydroxylase 2285216..2287531 Rubrobacter xylanophilus DSM 9941 4115217 YP_645017.1 CDS Rxyl_2275 NC_008148.1 2287547 2288311 D PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: reu:Reut_A2183 NAD-dependent epimerase/dehydratase:short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2287547..2288311 Rubrobacter xylanophilus DSM 9941 4115218 YP_645018.1 CDS Rxyl_2276 NC_008148.1 2288311 2288787 D PFAM: regulatory protein, MarR; KEGG: reu:Reut_A2992 regulatory protein, MarR; MarR family transcriptional regulator 2288311..2288787 Rubrobacter xylanophilus DSM 9941 4115219 YP_645019.1 CDS Rxyl_2277 NC_008148.1 2288789 2289607 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2288789..2289607 Rubrobacter xylanophilus DSM 9941 4117497 YP_645020.1 CDS Rxyl_2278 NC_008148.1 2289609 2290781 D PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: rso:RS02011 probable acyl-CoA dehydrogenase oxidoreductase protein; acyl-CoA dehydrogenase-like protein 2289609..2290781 Rubrobacter xylanophilus DSM 9941 4117498 YP_645021.1 CDS Rxyl_2279 NC_008148.1 2290806 2292437 D PFAM: AMP-dependent synthetase and ligase; KEGG: nfa:nfa12430 putative acyl-CoA synthetase; AMP-dependent synthetase and ligase 2290806..2292437 Rubrobacter xylanophilus DSM 9941 4117499 YP_645022.1 CDS Rxyl_2280 NC_008148.1 2292437 2292835 D PFAM: Endoribonuclease L-PSP; KEGG: mlo:mll5429 hypothetical protein; endoribonuclease L-PSP 2292437..2292835 Rubrobacter xylanophilus DSM 9941 4117500 YP_645023.1 CDS Rxyl_2281 NC_008148.1 2293250 2293594 D KEGG: sme:SMb20060 probable ISRm5 transposase protein; hypothetical protein 2293250..2293594 Rubrobacter xylanophilus DSM 9941 4117501 YP_645024.1 CDS Rxyl_2282 NC_008148.1 2293947 2295887 D PFAM: protein of unknown function RIO1 protein kinase; SMART: Tyrosine protein kinase Serine/threonine protein kinase; KEGG: mta:Moth_0912 serine/threonine protein kinase; serine/threonine protein kinase 2293947..2295887 Rubrobacter xylanophilus DSM 9941 4117502 YP_645025.1 CDS Rxyl_2283 NC_008148.1 2296158 2296397 D hypothetical protein 2296158..2296397 Rubrobacter xylanophilus DSM 9941 4117503 YP_645026.1 CDS Rxyl_2284 NC_008148.1 2296763 2297092 R hypothetical protein complement(2296763..2297092) Rubrobacter xylanophilus DSM 9941 4117504 YP_645027.1 CDS Rxyl_2285 NC_008148.1 2297214 2297471 D hypothetical protein 2297214..2297471 Rubrobacter xylanophilus DSM 9941 4117505 YP_645028.1 CDS Rxyl_2286 NC_008148.1 2297664 2299394 D PFAM: transposase, IS4; KEGG: gvi:glr4322 putative transposase; IS4 family transposase 2297664..2299394 Rubrobacter xylanophilus DSM 9941 4117506 YP_645029.1 CDS Rxyl_2288 NC_008148.1 2302146 2302580 R hypothetical protein complement(2302146..2302580) Rubrobacter xylanophilus DSM 9941 4117507 YP_645030.1 CDS Rxyl_2289 NC_008148.1 2303102 2303962 R PFAM: lipase, class 2; KEGG: sco:SCO1735 secreted lipase; lipase, class 2 complement(2303102..2303962) Rubrobacter xylanophilus DSM 9941 4117508 YP_645031.1 CDS Rxyl_2290 NC_008148.1 2304245 2305006 D PFAM: metallophosphoesterase; KEGG: mja:MJ0912 hypothetical protein; metallophosphoesterase 2304245..2305006 Rubrobacter xylanophilus DSM 9941 4117509 YP_645032.1 CDS Rxyl_2291 NC_008148.1 2305012 2305452 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 2305012..2305452 Rubrobacter xylanophilus DSM 9941 4117510 YP_645033.1 CDS Rxyl_2292 NC_008148.1 2305449 2306252 R PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: mac:MA4347 menaquinone biosynthesis methyltransferase (2-heptaprenyl-1,4-naphthoquinone methyltransferase); type 11 methyltransferase complement(2305449..2306252) Rubrobacter xylanophilus DSM 9941 4117511 YP_645034.1 CDS Rxyl_2293 NC_008148.1 2306302 2308143 D PFAM: ABC transporter related; SMART: ATPase; KEGG: pca:Pcar_2038 ABC transporter, ATP-binding protein; ABC transporter-like protein 2306302..2308143 Rubrobacter xylanophilus DSM 9941 4117512 YP_645035.1 CDS Rxyl_2294 NC_008148.1 2308321 2309397 R PFAM: Peptidoglycan-binding domain 1 cell wall hydrolase/autolysin; KEGG: mle:ML2704 putative hydrolase; cell wall hydrolase/autolysin complement(2308321..2309397) Rubrobacter xylanophilus DSM 9941 4117513 YP_645036.1 CDS Rxyl_2295 NC_008148.1 2309526 2309792 R PFAM: chaperonin Cpn10; KEGG: tma:TM0505 groES protein; chaperonin Cpn10 complement(2309526..2309792) Rubrobacter xylanophilus DSM 9941 4117514 YP_645037.1 CDS Rxyl_2296 NC_008148.1 2309899 2310210 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: det:DET0695 thioredoxin; thioredoxin complement(2309899..2310210) Rubrobacter xylanophilus DSM 9941 4117515 YP_645038.1 CDS Rxyl_2297 NC_008148.1 2310281 2311240 R PFAM: PfkB; KEGG: sth:STH1246 tagatose-6-phosphate kinase; 1-phosphofructokinase complement(2310281..2311240) Rubrobacter xylanophilus DSM 9941 4117516 YP_645039.1 CDS Rxyl_2298 NC_008148.1 2311245 2312399 R PFAM: beta-lactamase peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: mta:Moth_1058 serine-type D-Ala-D-Ala carboxypeptidase; Serine-type D-Ala-D-Ala carboxypeptidase complement(2311245..2312399) Rubrobacter xylanophilus DSM 9941 4117517 YP_645040.1 CDS Rxyl_2299 NC_008148.1 2312504 2313025 D PFAM: Redoxin; KEGG: plt:Plut_1572 hypothetical protein; redoxin 2312504..2313025 Rubrobacter xylanophilus DSM 9941 4117518 YP_645041.1 CDS Rxyl_2300 NC_008148.1 2313185 2314027 R TIGRFAM: Orotidine 5'-phosphate decarboxylase subfamily 2; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: sru:SRU_1735 orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase subfamily protein complement(2313185..2314027) Rubrobacter xylanophilus DSM 9941 4117519 YP_645042.1 CDS Rxyl_2301 NC_008148.1 2314109 2314381 R PFAM: histone-like DNA-binding protein; KEGG: tte:TTE2453 Bacterial nucleoid DNA-binding protein; nucleoid protein Hbs complement(2314109..2314381) Rubrobacter xylanophilus DSM 9941 4117520 YP_645043.1 CDS Rxyl_2302 NC_008148.1 2314476 2315012 R TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: fra:Francci3_0559 orotate phosphoribosyltransferase; orotate phosphoribosyltransferase complement(2314476..2315012) Rubrobacter xylanophilus DSM 9941 4117521 YP_645044.1 CDS Rxyl_2303 NC_008148.1 2314999 2315454 R hypothetical protein complement(2314999..2315454) Rubrobacter xylanophilus DSM 9941 4117522 YP_645045.1 CDS Rxyl_2304 NC_008148.1 2315527 2315787 R PFAM: protein of unknown function DUF156; KEGG: mbo:Mb0992 hypothetical protein; hypothetical protein complement(2315527..2315787) Rubrobacter xylanophilus DSM 9941 4117523 YP_645046.1 CDS Rxyl_2305 NC_008148.1 2315760 2317298 R TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetases; PFAM: cytoplasmic peptidoglycan synthetase-like cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: mta:Moth_0838 UDP-N-acetylmuramyl-tripeptide synthetases; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(2315760..2317298) Rubrobacter xylanophilus DSM 9941 4117524 YP_645047.1 CDS Rxyl_2306 NC_008148.1 2317478 2318578 D PFAM: sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 sigma-70 region 1.2; KEGG: mta:Moth_0624 sigma 38 (RpoS); RNA polymerase sigma-28 subunit 2317478..2318578 Rubrobacter xylanophilus DSM 9941 4117525 YP_645048.1 CDS Rxyl_2307 NC_008148.1 2318562 2319386 D PFAM: inositol monophosphatase; KEGG: gsu:GSU0942 inositol-1-monophosphatase; inositol-1(or 4)-monophosphatase 2318562..2319386 Rubrobacter xylanophilus DSM 9941 4117526 YP_645049.1 CDS Rxyl_2308 NC_008148.1 2319383 2321668 R KEGG: mta:Moth_1710 penicillin-binding protein 1A; TIGRFAM: Penicillin-binding protein 1A; PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase; penicillin-binding protein 1A complement(2319383..2321668) Rubrobacter xylanophilus DSM 9941 4117527 YP_645050.1 CDS Rxyl_2309 NC_008148.1 2321992 2322855 D PFAM: aminotransferase, class V; KEGG: sth:STH132 L-cysteine/cystine lyase; class V aminotransferase 2321992..2322855 Rubrobacter xylanophilus DSM 9941 4117528 YP_645051.1 CDS Rxyl_2310 NC_008148.1 2322852 2323517 R TIGRFAM: HAD-superfamily hydrolase subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: tte:TTE2216 predicted phosphatase; HAD family hydrolase complement(2322852..2323517) Rubrobacter xylanophilus DSM 9941 4117529 YP_645052.1 CDS Rxyl_2311 NC_008148.1 2323514 2324353 R KEGG: gsu:GSU1523 stationary-phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; 3'-nucleotidase/5'- nucleotidase/exopolyphosphatase complement(2323514..2324353) Rubrobacter xylanophilus DSM 9941 4117530 YP_645053.1 CDS Rxyl_2312 NC_008148.1 2324457 2325464 D PFAM: glycosyl transferase, family 2; KEGG: tfu:Tfu_1730 hypothetical protein; putative glucosyl-3-phosphoglycerate synthase 2324457..2325464 Rubrobacter xylanophilus DSM 9941 4117531 YP_645054.1 CDS Rxyl_2313 NC_008148.1 2325464 2325763 D KEGG: nfa:nfa20770 putative ScnB homolog; putative ScnB-like protein 2325464..2325763 Rubrobacter xylanophilus DSM 9941 4117532 YP_645055.1 CDS Rxyl_2314 NC_008148.1 2325748 2326041 D KEGG: nfa:nfa20760 putative ScnA homolog; putative ScnA-like protein 2325748..2326041 Rubrobacter xylanophilus DSM 9941 4117533 YP_645056.1 CDS Rxyl_2315 NC_008148.1 2326038 2326661 D KEGG: sil:SPO1314 nitrile hydratase subunit alpha; TIGRFAM: nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase alpha chain; nitrile hydratase subunit alpha 2326038..2326661 Rubrobacter xylanophilus DSM 9941 4117534 YP_645057.1 CDS Rxyl_2316 NC_008148.1 2326744 2327283 R PFAM: bifunctional deaminase-reductase-like; KEGG: bce:BC3158 pyrimidine reductase; bifunctional deaminase-reductase-like protein complement(2326744..2327283) Rubrobacter xylanophilus DSM 9941 4117535 YP_645058.1 CDS Rxyl_2317 NC_008148.1 2327364 2328137 R SMART: Helix-turn-helix, AraC type; KEGG: nfa:nfa53500 putative transcriptional regulator; AraC family transcriptional regulator complement(2327364..2328137) Rubrobacter xylanophilus DSM 9941 4117536 YP_645059.1 CDS Rxyl_2318 NC_008148.1 2328305 2330353 R TIGRFAM: Small GTP-binding protein domain; PFAM: elongation factor G-like protein synthesis factor, GTP-binding elongation factor Tu, domain 2 elongation factor G, domain IV; KEGG: dde:Dde_2741 translation elongation factor G, putative; small GTP-binding protein domain-containing protein complement(2328305..2330353) Rubrobacter xylanophilus DSM 9941 4117537 YP_645060.1 CDS Rxyl_2319 NC_008148.1 2330482 2331165 R PFAM: peptidase, membrane zinc metallopeptidase, putative; KEGG: tth:TTC0540 hypothetical membrane spanning protein; peptidase, membrane zinc metallopeptidase complement(2330482..2331165) Rubrobacter xylanophilus DSM 9941 4117538 YP_645061.1 CDS Rxyl_2320 NC_008148.1 2331249 2331698 R PFAM: heat shock protein Hsp20; KEGG: dps:DP1866 similar to low molecular weight heat shock protein (HSP17); heat shock protein Hsp20 complement(2331249..2331698) Rubrobacter xylanophilus DSM 9941 4117539 YP_645062.1 CDS Rxyl_2321 NC_008148.1 2331837 2332217 D hypothetical protein 2331837..2332217 Rubrobacter xylanophilus DSM 9941 4117540 YP_645063.1 CDS Rxyl_2322 NC_008148.1 2332294 2333034 D PFAM: 60 kDa inner membrane insertion protein; KEGG: yps:YPTB3948 Oxa1 family transporter; 60 kDa inner membrane insertion protein 2332294..2333034 Rubrobacter xylanophilus DSM 9941 4117541 YP_645064.1 CDS Rxyl_2324 NC_008148.1 2334364 2335356 R PFAM: Transketolase, central region Transketolase-like; KEGG: lic:LIC11898 pyruvate dehydrogenase beta2 subunit protein; transketolase, central region complement(2334364..2335356) Rubrobacter xylanophilus DSM 9941 4117542 YP_645065.1 CDS Rxyl_2325 NC_008148.1 2335361 2336422 R PFAM: dehydrogenase, E1 component; KEGG: gme:Gmet_2760 dehydrogenase, E1 component; pyruvate dehydrogenase complement(2335361..2336422) Rubrobacter xylanophilus DSM 9941 4117543 YP_645066.1 CDS Rxyl_2326 NC_008148.1 2336522 2337136 R PFAM: Ham1-like protein; KEGG: mka:MK1594 xanthosine triphosphate pyrophosphatase; Ham1-like protein complement(2336522..2337136) Rubrobacter xylanophilus DSM 9941 4117544 YP_645067.1 CDS Rxyl_2327 NC_008148.1 2337131 2337718 D hypothetical protein 2337131..2337718 Rubrobacter xylanophilus DSM 9941 4117545 YP_645068.1 CDS Rxyl_2328 NC_008148.1 2337725 2339026 D PFAM: aminotransferase, class I and II; KEGG: pac:PPA2337 probable aminotransferase; class I and II aminotransferase 2337725..2339026 Rubrobacter xylanophilus DSM 9941 4117546 YP_645069.1 CDS Rxyl_2329 NC_008148.1 2339037 2339993 D KEGG: pca:Pcar_2199 D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: protein of unknown function DUF201 D-alanine--D-alanine ligase-like; D-alanine--D-alanine ligase 2339037..2339993 Rubrobacter xylanophilus DSM 9941 4117547 YP_645070.1 CDS Rxyl_2330 NC_008148.1 2339997 2341340 R TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid complement(2339997..2341340) Rubrobacter xylanophilus DSM 9941 4117548 YP_645071.1 CDS Rxyl_2331 NC_008148.1 2341405 2342322 D KEGG: gka:GK1493 hypothetical protein; hypothetical protein 2341405..2342322 Rubrobacter xylanophilus DSM 9941 4117549 YP_645072.1 CDS Rxyl_2332 NC_008148.1 2342309 2342722 R hypothetical protein complement(2342309..2342722) Rubrobacter xylanophilus DSM 9941 4117550 YP_645073.1 CDS Rxyl_2333 NC_008148.1 2342729 2343508 R Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase complement(2342729..2343508) Rubrobacter xylanophilus DSM 9941 4117551 YP_645074.1 CDS Rxyl_2334 NC_008148.1 2343528 2343974 R TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: thioesterase superfamily; KEGG: pfo:Pfl_0258 phenylacetic acid degradation-like protein; phenylacetic acid degradation-like protein complement(2343528..2343974) Rubrobacter xylanophilus DSM 9941 4117552 YP_645075.1 CDS Rxyl_2335 NC_008148.1 2344006 2344767 R PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: gka:GK1655 short chain oxidoreductase; 3-oxoacyl-ACP reductase complement(2344006..2344767) Rubrobacter xylanophilus DSM 9941 4117553 YP_645076.1 CDS Rxyl_2336 NC_008148.1 2344772 2345635 R PFAM: 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: bha:BH1995 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase complement(2344772..2345635) Rubrobacter xylanophilus DSM 9941 4117554 YP_645077.1 CDS Rxyl_2337 NC_008148.1 2345635 2346696 R PFAM: aminoglycoside phosphotransferase; KEGG: gka:GK1032 hypothetical protein; aminoglycoside phosphotransferase complement(2345635..2346696) Rubrobacter xylanophilus DSM 9941 4117555 YP_645078.1 CDS Rxyl_2338 NC_008148.1 2346693 2347457 R PFAM: 2-phosphosulfolactate phosphatase; KEGG: mta:Moth_0119 2-phosphosulfolactate phosphatase; 2-phosphosulfolactate phosphatase complement(2346693..2347457) Rubrobacter xylanophilus DSM 9941 4115604 YP_645079.1 CDS Rxyl_2339 NC_008148.1 2347551 2349212 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(2347551..2349212) Rubrobacter xylanophilus DSM 9941 4115605 YP_645080.1 CDS Rxyl_2340 NC_008148.1 2349364 2350377 D KEGG: gka:GK1506 phosphotriesterase; TIGRFAM: uncharacterized domain HDIG; PFAM: aryldialkylphosphatase; hypothetical protein 2349364..2350377 Rubrobacter xylanophilus DSM 9941 4115606 YP_645081.1 CDS Rxyl_2341 NC_008148.1 2350374 2351174 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gka:GK2038 enoyl-CoA hydratase subunit II (phenylacetic acid catabolism); enoyl-CoA hydratase/short chain enoyl-CoA hydratase complement(2350374..2351174) Rubrobacter xylanophilus DSM 9941 4115607 YP_645082.1 CDS Rxyl_2342 NC_008148.1 2351171 2353153 R AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase complement(2351171..2353153) Rubrobacter xylanophilus DSM 9941 4115608 YP_645083.1 CDS Rxyl_2343 NC_008148.1 2353176 2353964 R TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: tfu:Tfu_0081 3-hydroxybutyrate dehydrogenase; 3-hydroxybutyrate dehydrogenase complement(2353176..2353964) Rubrobacter xylanophilus DSM 9941 4115609 YP_645084.1 CDS Rxyl_2344 NC_008148.1 2354043 2355428 R PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: bja:bll0889 putative transport protein; major facilitator transporter complement(2354043..2355428) Rubrobacter xylanophilus DSM 9941 4115610 YP_645085.1 CDS Rxyl_2345 NC_008148.1 2355492 2356964 R KEGG: ade:Adeh_0244 LigA; LigA complement(2355492..2356964) Rubrobacter xylanophilus DSM 9941 4115611 YP_645086.1 CDS Rxyl_2346 NC_008148.1 2357087 2359132 D KEGG: sma:SAV376 hypothetical protein; regulator of polyketide synthase expression-like protein 2357087..2359132 Rubrobacter xylanophilus DSM 9941 4115612 YP_645087.1 CDS Rxyl_2347 NC_008148.1 2359094 2359711 R PFAM: DSBA oxidoreductase; KEGG: reu:Reut_B4723 DsbA oxidoreductase; DSBA oxidoreductase complement(2359094..2359711) Rubrobacter xylanophilus DSM 9941 4115613 YP_645088.1 CDS Rxyl_2348 NC_008148.1 2359839 2360720 D PFAM: protein of unknown function DUF81; KEGG: tfu:Tfu_1694 hypothetical protein; hypothetical protein 2359839..2360720 Rubrobacter xylanophilus DSM 9941 4115614 YP_645089.1 CDS Rxyl_2349 NC_008148.1 2360787 2362100 R PFAM: sulfatase; KEGG: mpa:MAP3791c AtsG; sulfatase complement(2360787..2362100) Rubrobacter xylanophilus DSM 9941 4115615 YP_645090.1 CDS Rxyl_2350 NC_008148.1 2362097 2362951 R KEGG: mbo:Mb0303c hypothetical protein; hypothetical protein complement(2362097..2362951) Rubrobacter xylanophilus DSM 9941 4115616 YP_645091.1 CDS Rxyl_2351 NC_008148.1 2363180 2364310 D PFAM: oxidoreductase, molybdopterin binding; KEGG: ret:RHE_CH02958 putative sulfite oxidase protein; oxidoreductase protein 2363180..2364310 Rubrobacter xylanophilus DSM 9941 4115617 YP_645092.1 CDS Rxyl_2352 NC_008148.1 2364412 2365293 D PFAM: Rhodanese-like; KEGG: ttj:TTHA1028 thiosulfate sulfurtransferase; thiosulfate sulfurtransferase 2364412..2365293 Rubrobacter xylanophilus DSM 9941 4115618 YP_645093.1 CDS Rxyl_2353 NC_008148.1 2365304 2365828 D PFAM: carbonic anhydrase; KEGG: fra:Francci3_0216 carbonic anhydrase; carbonic anhydrase 2365304..2365828 Rubrobacter xylanophilus DSM 9941 4115619 YP_645094.1 CDS Rxyl_2354 NC_008148.1 2365825 2366337 D PFAM: OsmC-like protein; KEGG: ade:Adeh_0443 OsmC-like protein; OsmC-like protein 2365825..2366337 Rubrobacter xylanophilus DSM 9941 4115620 YP_645095.1 CDS Rxyl_2355 NC_008148.1 2366411 2366989 D PFAM: adenylylsulfate kinase; KEGG: syn:slr0676 adenylylsulfate 3-phosphotransferase; adenylylsulfate kinase 2366411..2366989 Rubrobacter xylanophilus DSM 9941 4115621 YP_645096.1 CDS Rxyl_2356 NC_008148.1 2367002 2367466 R PFAM: protein of unknown function UPF0074; KEGG: tfu:Tfu_0800 hypothetical protein; BadM/Rrf2 family transcriptional regulator complement(2367002..2367466) Rubrobacter xylanophilus DSM 9941 4115622 YP_645097.1 CDS Rxyl_2357 NC_008148.1 2367801 2368673 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: gme:Gmet_1711 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 2367801..2368673 Rubrobacter xylanophilus DSM 9941 4115642 YP_645098.1 CDS Rxyl_2358 NC_008148.1 2368675 2370303 D PFAM: AMP-dependent synthetase and ligase; KEGG: dra:DR2507 medium-chain fatty acid--CoA ligase; AMP-dependent synthetase and ligase 2368675..2370303 Rubrobacter xylanophilus DSM 9941 4115643 YP_645099.1 CDS Rxyl_2359 NC_008148.1 2370383 2372170 D PFAM: peptidase S15 X-Pro dipeptidyl-peptidase-like; KEGG: lmo:lmo2755 similar to acylase and diesterase; X-Pro dipeptidyl-peptidase-like protein 2370383..2372170 Rubrobacter xylanophilus DSM 9941 4115644 YP_645100.1 CDS Rxyl_2360 NC_008148.1 2372218 2373375 D PFAM: Thiolase; KEGG: tth:TTC0330 acetyl-CoA acetyltransferase; acetyl-CoA C-acyltransferase 2372218..2373375 Rubrobacter xylanophilus DSM 9941 4115645 YP_645101.1 CDS Rxyl_2361 NC_008148.1 2373383 2374153 R KEGG: syf:Synpcc7942_1526 hypothetical protein; hypothetical protein complement(2373383..2374153) Rubrobacter xylanophilus DSM 9941 4115646 YP_645102.1 CDS Rxyl_2362 NC_008148.1 2374229 2374570 R KEGG: nfa:nfa22990 hypothetical protein; hypothetical protein complement(2374229..2374570) Rubrobacter xylanophilus DSM 9941 4115647 YP_645103.1 CDS Rxyl_2363 NC_008148.1 2374571 2374786 R hypothetical protein complement(2374571..2374786) Rubrobacter xylanophilus DSM 9941 4115648 YP_645104.1 CDS Rxyl_2364 NC_008148.1 2374799 2375194 R PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: tfu:Tfu_0093 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like protein complement(2374799..2375194) Rubrobacter xylanophilus DSM 9941 4115649 YP_645105.1 CDS Rxyl_2365 NC_008148.1 2375166 2376062 R PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: gvi:gll0669 RNA polymerase sigma-70 factor; ECF subfamily RNA polymerase sigma-24 factor complement(2375166..2376062) Rubrobacter xylanophilus DSM 9941 4115650 YP_645106.1 CDS Rxyl_2366 NC_008148.1 2376059 2376505 R hypothetical protein complement(2376059..2376505) Rubrobacter xylanophilus DSM 9941 4115651 YP_645107.1 CDS Rxyl_2367 NC_008148.1 2376593 2376940 R TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily; KEGG: ade:Adeh_1639 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase complement(2376593..2376940) Rubrobacter xylanophilus DSM 9941 4115652 YP_645108.1 CDS Rxyl_2368 NC_008148.1 2376991 2377767 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: tte:TTE0544 Enoyl-CoA hydratase/carnithine racemase; short chain enoyl-CoA hydratase complement(2376991..2377767) Rubrobacter xylanophilus DSM 9941 4115653 YP_645109.1 CDS Rxyl_2369 NC_008148.1 2377849 2378250 R TIGRFAM: methylmalonyl-CoA mutase C-terminal domain; PFAM: cobalamin B12-binding; KEGG: tte:TTE2388 methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding); methylmalonyl-CoA mutase-like protein complement(2377849..2378250) Rubrobacter xylanophilus DSM 9941 4115654 YP_645110.1 CDS Rxyl_2370 NC_008148.1 2378263 2379150 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sth:STH451 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase complement(2378263..2379150) Rubrobacter xylanophilus DSM 9941 4115655 YP_645111.1 CDS Rxyl_2371 NC_008148.1 2379158 2379418 R hypothetical protein complement(2379158..2379418) Rubrobacter xylanophilus DSM 9941 4115656 YP_645112.1 CDS Rxyl_2372 NC_008148.1 2379420 2380109 R KEGG: ava:Ava_0557 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase complement(2379420..2380109) Rubrobacter xylanophilus DSM 9941 4115657 YP_645113.1 CDS Rxyl_2373 NC_008148.1 2380149 2381285 D KEGG: cdi:DIP2068 hypothetical protein; hypothetical protein 2380149..2381285 Rubrobacter xylanophilus DSM 9941 4115658 YP_645114.1 CDS Rxyl_2374 NC_008148.1 2381282 2381680 R PFAM: Endoribonuclease L-PSP; KEGG: syf:Synpcc7942_2408 hypothetical protein; endoribonuclease L-PSP complement(2381282..2381680) Rubrobacter xylanophilus DSM 9941 4115659 YP_645115.1 CDS Rxyl_2375 NC_008148.1 2381677 2384535 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding protein of unknown function DUF224, cysteine-rich region FAD linked oxidase-like; KEGG: gvi:glr3436 probable oxidoreductase; FAD linked oxidase-like protein complement(2381677..2384535) Rubrobacter xylanophilus DSM 9941 4115660 YP_645116.1 CDS Rxyl_2376 NC_008148.1 2384640 2385965 D KEGG: sco:SCO7492 hypothetical protein; hypothetical protein 2384640..2385965 Rubrobacter xylanophilus DSM 9941 4115661 YP_645117.1 CDS Rxyl_2377 NC_008148.1 2385971 2387059 D PFAM: conserved hypothetical protein 374; KEGG: mac:MA2251 hypothetical protein; hypothetical protein 2385971..2387059 Rubrobacter xylanophilus DSM 9941 4115623 YP_645118.1 CDS Rxyl_2378 NC_008148.1 2387050 2387865 R PFAM: beta-lactamase-like; KEGG: ssp:SSP0236 similar to quorum-quenching N-acyl homoserine lactonase; beta-lactamase-like protein complement(2387050..2387865) Rubrobacter xylanophilus DSM 9941 4115624 YP_645119.1 CDS Rxyl_2379 NC_008148.1 2387951 2389045 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: nar:Saro_0513 alcohol dehydrogenase, zinc-containing; zinc-binding alcohol dehydrogenase 2387951..2389045 Rubrobacter xylanophilus DSM 9941 4115625 YP_645120.1 CDS Rxyl_2380 NC_008148.1 2389069 2390532 D PFAM: aldehyde dehydrogenase; KEGG: reu:Reut_A2614 aldehyde dehydrogenase (NAD+); betaine-aldehyde dehydrogenase 2389069..2390532 Rubrobacter xylanophilus DSM 9941 4115626 YP_645121.1 CDS Rxyl_2381 NC_008148.1 2390541 2391827 R PFAM: iron-containing alcohol dehydrogenase; KEGG: dre:404618 zgc:77479; iron-containing alcohol dehydrogenase complement(2390541..2391827) Rubrobacter xylanophilus DSM 9941 4115627 YP_645122.1 CDS Rxyl_2382 NC_008148.1 2392023 2393708 D PFAM: AMP-dependent synthetase and ligase; KEGG: sma:SAV6612 putative acyl-CoA synthetase, long chain-fatty acid:CoA ligase; AMP-dependent synthetase and ligase 2392023..2393708 Rubrobacter xylanophilus DSM 9941 4115628 YP_645123.1 CDS Rxyl_2383 NC_008148.1 2393709 2395424 D PFAM: peptidase S15 X-Pro dipeptidyl-peptidase-like; KEGG: cya:CYA_1044 X-Pro dipeptidyl-peptidase (S15 family); peptidase S15 2393709..2395424 Rubrobacter xylanophilus DSM 9941 4115629 YP_645124.1 CDS Rxyl_2384 NC_008148.1 2395552 2396448 D PFAM: E3 binding; KEGG: bca:BCE1428 PhaR protein; E3 binding protein 2395552..2396448 Rubrobacter xylanophilus DSM 9941 4115630 YP_645125.1 CDS Rxyl_2385 NC_008148.1 2396452 2397528 D TIGRFAM: Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; PFAM: alpha/beta hydrolase fold PHB de-polymerase-like; KEGG: btk:BT9727_1208 poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit 2396452..2397528 Rubrobacter xylanophilus DSM 9941 4115631 YP_645126.1 CDS Rxyl_2386 NC_008148.1 2397552 2399396 R TIGRFAM: Poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold Poly-beta-hydroxybutyrate polymerase-like; KEGG: rru:Rru_A2413 poly(R)-hydroxyalkanoic acid synthase, class I; Poly(R)-hydroxyalkanoic acid synthase, class I complement(2397552..2399396) Rubrobacter xylanophilus DSM 9941 4115632 YP_645127.1 CDS Rxyl_2387 NC_008148.1 2399499 2400707 D PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: afu:AF0991 glutaryl-CoA dehydrogenase (GcdH); acyl-CoA dehydrogenase-like protein 2399499..2400707 Rubrobacter xylanophilus DSM 9941 4115633 YP_645128.1 CDS Rxyl_2388 NC_008148.1 2400804 2401310 D PFAM: GCN5-related N-acetyltransferase; KEGG: tfu:Tfu_2128 hypothetical protein; N-acetyltransferase GCN5 2400804..2401310 Rubrobacter xylanophilus DSM 9941 4115634 YP_645129.1 CDS Rxyl_2389 NC_008148.1 2401348 2402556 R PFAM: Thiolase; KEGG: tte:TTE0549 Acetyl-CoA acetyltransferases; acetyl-CoA acetyltransferase complement(2401348..2402556) Rubrobacter xylanophilus DSM 9941 4115635 YP_645130.1 CDS Rxyl_2390 NC_008148.1 2402657 2402989 R hypothetical protein complement(2402657..2402989) Rubrobacter xylanophilus DSM 9941 4115636 YP_645131.1 CDS Rxyl_2391 NC_008148.1 2403132 2403461 R hypothetical protein complement(2403132..2403461) Rubrobacter xylanophilus DSM 9941 4115637 YP_645132.1 CDS Rxyl_2392 NC_008148.1 2403489 2403938 R PFAM: transcriptional regulator PadR-like; KEGG: bca:BCE1427 transcriptional regulator, PadR family; PadR family transcriptional regulator complement(2403489..2403938) Rubrobacter xylanophilus DSM 9941 4115638 YP_645133.1 CDS fabG NC_008148.1 2404129 2404872 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2404129..2404872 Rubrobacter xylanophilus DSM 9941 4115639 YP_645134.1 CDS Rxyl_2394 NC_008148.1 2405045 2405857 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: tfu:Tfu_2308 putative 3-oxoacyl-ACP reductase; short-chain dehydrogenase/reductase SDR 2405045..2405857 Rubrobacter xylanophilus DSM 9941 4115640 YP_645135.1 CDS Rxyl_2395 NC_008148.1 2406226 2406984 D KEGG: mta:Moth_0547 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 2406226..2406984 Rubrobacter xylanophilus DSM 9941 4115641 YP_645136.2 CDS Rxyl_2396 NC_008148.1 2406893 2407876 D fusion of thiS and thiG; functions in thiamine (vitamin B1) biosynthesis; bifunctional sulfur carrier protein/thiazole synthase 2406893..2407876 Rubrobacter xylanophilus DSM 9941 4115355 YP_645137.1 CDS Rxyl_2397 NC_008148.1 2407939 2408805 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mbo:Mb0592 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 2407939..2408805 Rubrobacter xylanophilus DSM 9941 4115356 YP_645138.1 CDS Rxyl_2398 NC_008148.1 2408724 2409731 R PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: gka:GK1034 NADPH:quinone oxidoreductase; zinc-binding alcohol dehydrogenase complement(2408724..2409731) Rubrobacter xylanophilus DSM 9941 4115357 YP_645139.1 CDS Rxyl_2399 NC_008148.1 2409783 2410952 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: mag:amb1653 predicted acyl-CoA transferase/carnitine dehydratase; L-carnitine dehydratase/bile acid-inducible protein F 2409783..2410952 Rubrobacter xylanophilus DSM 9941 4115358 YP_645140.1 CDS prpB NC_008148.1 2411043 2411978 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 2411043..2411978 Rubrobacter xylanophilus DSM 9941 4115359 YP_645141.1 CDS Rxyl_2401 NC_008148.1 2411982 2413097 D KEGG: ilo:IL1426 citrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; 2-methylcitrate synthase 2411982..2413097 Rubrobacter xylanophilus DSM 9941 4115360 YP_645142.1 CDS prpD NC_008148.1 2413100 2414512 D functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 2413100..2414512 Rubrobacter xylanophilus DSM 9941 4115361 YP_645143.1 CDS Rxyl_2403 NC_008148.1 2414623 2415618 D PFAM: dehydrogenase, E1 component; KEGG: bur:Bcep18194_A5140 pyruvate dehydrogenase (lipoamide); pyruvate dehydrogenase 2414623..2415618 Rubrobacter xylanophilus DSM 9941 4115362 YP_645144.1 CDS Rxyl_2404 NC_008148.1 2415654 2416673 D PFAM: Transketolase, central region Transketolase-like; KEGG: bur:Bcep18194_A5139 acetoin/2,6-dichlorophenolindophenol oxidoreductase beta subunit; transketolase, central region 2415654..2416673 Rubrobacter xylanophilus DSM 9941 4115363 YP_645145.1 CDS Rxyl_2405 NC_008148.1 2416684 2417793 D PFAM: alpha/beta hydrolase fold biotin/lipoyl attachment; KEGG: pae:PA4152 probable hydrolase; branched-chain alpha-keto acid dehydrogenase subunit E2 2416684..2417793 Rubrobacter xylanophilus DSM 9941 4115364 YP_645146.1 CDS Rxyl_2406 NC_008148.1 2417786 2418799 D PFAM: ATP-NAD/AcoX kinase; KEGG: pca:Pcar_0341 acetoin catabolism protein X; ATP-NAD/AcoX kinase 2417786..2418799 Rubrobacter xylanophilus DSM 9941 4115365 YP_645147.1 CDS Rxyl_2407 NC_008148.1 2418891 2419694 R PFAM: putative cyclase; KEGG: pfl:PFL_4035 hypothetical polyketide cyclase; putative cyclase complement(2418891..2419694) Rubrobacter xylanophilus DSM 9941 4115366 YP_645148.1 CDS Rxyl_2408 NC_008148.1 2419814 2421124 D PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: sma:SAV6941 putative transmembrane efflux protein; major facilitator transporter 2419814..2421124 Rubrobacter xylanophilus DSM 9941 4115367 YP_645149.1 CDS Rxyl_2409 NC_008148.1 2421124 2421903 D PFAM: protein of unknown function DUF1445; KEGG: bld:BLi00500 hypothetical protein; hypothetical protein 2421124..2421903 Rubrobacter xylanophilus DSM 9941 4115368 YP_645150.1 CDS Rxyl_2410 NC_008148.1 2421900 2423876 D PFAM: Hydantoinase/oxoprolinase Hydantoinaseoxoprolinase-like; KEGG: gvi:gll2098 N-methylhydantoinase A, putative; 5-oxoprolinase 2421900..2423876 Rubrobacter xylanophilus DSM 9941 4115369 YP_645151.1 CDS Rxyl_2411 NC_008148.1 2423873 2425420 D PFAM: Hydantoinase B/oxoprolinase; KEGG: hma:pNG7165 N-methylhydantoinase B; 5-oxoprolinase 2423873..2425420 Rubrobacter xylanophilus DSM 9941 4115370 YP_645152.1 CDS Rxyl_2412 NC_008148.1 2425446 2425934 D PFAM: MOSC; KEGG: sil:SPOA0174 MOSC domain protein; MOSC domain-containing protein 2425446..2425934 Rubrobacter xylanophilus DSM 9941 4115371 YP_645153.1 CDS Rxyl_2413 NC_008148.1 2425931 2427169 R PFAM: glycoside hydrolase 15-related; KEGG: mac:MA1190 glucan 1,4-alpha-glucosidase; glycoside hydrolase 15-like protein complement(2425931..2427169) Rubrobacter xylanophilus DSM 9941 4115372 YP_645154.1 CDS Rxyl_2414 NC_008148.1 2427376 2428560 R PFAM: major facilitator superfamily MFS_1; KEGG: atc:AGR_L_2008 hypothetical protein; major facilitator transporter complement(2427376..2428560) Rubrobacter xylanophilus DSM 9941 4115373 YP_645155.1 CDS Rxyl_2415 NC_008148.1 2428644 2429411 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sma:SAV6435 putative short-chain dehydrogenase/reductase; short-chain dehydrogenase/reductase SDR 2428644..2429411 Rubrobacter xylanophilus DSM 9941 4115374 YP_645156.1 CDS Rxyl_2416 NC_008148.1 2429359 2430822 R PFAM: FAD dependent oxidoreductase; KEGG: ade:Adeh_0229 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(2429359..2430822) Rubrobacter xylanophilus DSM 9941 4115336 YP_645157.1 CDS Rxyl_2418 NC_008148.1 2431538 2432776 D PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: gka:GK1028 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase-like protein 2431538..2432776 Rubrobacter xylanophilus DSM 9941 4115337 YP_645158.1 CDS Rxyl_2419 NC_008148.1 2432867 2434261 D PFAM: short chain fatty acid transporter; KEGG: bba:Bd0245 short-chain fatty acids transporter; short chain fatty acid transporter 2432867..2434261 Rubrobacter xylanophilus DSM 9941 4115338 YP_645159.1 CDS Rxyl_2420 NC_008148.1 2434324 2434536 D hypothetical protein 2434324..2434536 Rubrobacter xylanophilus DSM 9941 4115339 YP_645160.1 CDS Rxyl_2421 NC_008148.1 2434533 2435183 R PFAM: peptidase C60, sortase A and B; KEGG: blo:BL0498 possible sortase-like protein; peptidase C60, sortase A and B complement(2434533..2435183) Rubrobacter xylanophilus DSM 9941 4115340 YP_645161.1 CDS Rxyl_2422 NC_008148.1 2435214 2436149 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: chy:CHY_1130 oligopeptide/dipeptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(2435214..2436149) Rubrobacter xylanophilus DSM 9941 4115341 YP_645162.1 CDS Rxyl_2423 NC_008148.1 2436152 2437099 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: chy:CHY_1129 oligopeptide/dipeptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(2436152..2437099) Rubrobacter xylanophilus DSM 9941 4115342 YP_645163.1 CDS Rxyl_2424 NC_008148.1 2437226 2438923 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: sth:STH2315 dipeptide ABC transporter substrate-binding protein; twin-arginine translocation pathway signal protein complement(2437226..2438923) Rubrobacter xylanophilus DSM 9941 4115343 YP_645164.1 CDS Rxyl_2425 NC_008148.1 2439010 2439699 R PFAM: Endonuclease V; KEGG: gvi:glr4243 endonuclease V; endonuclease V complement(2439010..2439699) Rubrobacter xylanophilus DSM 9941 4115344 YP_645165.1 CDS Rxyl_2426 NC_008148.1 2439948 2441453 R PFAM: oxidoreductase, molybdopterin binding Mo-co oxidoreductase dimerisation domain; KEGG: sco:SCO0555 membrane-bound oxidoreductase; oxidoreductase protein complement(2439948..2441453) Rubrobacter xylanophilus DSM 9941 4115345 YP_645166.1 CDS Rxyl_2427 NC_008148.1 2441661 2442458 R KEGG: bur:Bcep18194_B0247 hypothetical protein; hypothetical protein complement(2441661..2442458) Rubrobacter xylanophilus DSM 9941 4115346 YP_645167.1 CDS Rxyl_2428 NC_008148.1 2442806 2446012 D TIGRFAM: isoleucyl-tRNA synthetase; KEGG: tfu:Tfu_1120 isoleucyl-tRNA synthetase, class Ia; isoleucyl-tRNA synthetase 2442806..2446012 Rubrobacter xylanophilus DSM 9941 4115347 YP_645168.1 CDS Rxyl_2429 NC_008148.1 2446104 2446556 D hypothetical protein 2446104..2446556 Rubrobacter xylanophilus DSM 9941 4115348 YP_645169.1 CDS Rxyl_2430 NC_008148.1 2446553 2446963 R hypothetical protein complement(2446553..2446963) Rubrobacter xylanophilus DSM 9941 4115349 YP_645170.1 CDS Rxyl_2431 NC_008148.1 2446998 2447552 D KEGG: ttj:TTHA1817 putative hydrolase (HD domain); hypothetical protein 2446998..2447552 Rubrobacter xylanophilus DSM 9941 4115350 YP_645171.1 CDS Rxyl_2432 NC_008148.1 2447582 2447932 D KEGG: sco:SCO5706 probable translational initiation factor; putative translational initiation factor 2447582..2447932 Rubrobacter xylanophilus DSM 9941 4115351 YP_645172.1 CDS Rxyl_2433 NC_008148.1 2447910 2448746 R KEGG: sth:STH849 formamidopyrimidine-DNA glycosidase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycolase zinc finger, Fpg-type; formamidopyrimidine-DNA glycosylase/DNA-(apurinic or apyrimidinic site) lyase complement(2447910..2448746) Rubrobacter xylanophilus DSM 9941 4115352 YP_645173.1 CDS Rxyl_2434 NC_008148.1 2448749 2449597 R TIGRFAM: Cof protein HAD-superfamily hydrolase subfamily IIB; PFAM: Haloacid dehalogenase-like hydrolase sucrose-6F-phosphate phosphohydrolase Haloacid dehalogenase-like hydrolase, type 3; KEGG: gvi:glr0833 hypothetical protein; Cof protein complement(2448749..2449597) Rubrobacter xylanophilus DSM 9941 4115353 YP_645174.1 CDS Rxyl_2435 NC_008148.1 2449662 2450000 R hypothetical protein complement(2449662..2450000) Rubrobacter xylanophilus DSM 9941 4115354 YP_645175.1 CDS Rxyl_2436 NC_008148.1 2450045 2450728 R hypothetical protein complement(2450045..2450728) Rubrobacter xylanophilus DSM 9941 4115505 YP_645176.1 CDS Rxyl_2437 NC_008148.1 2450867 2451622 D PFAM: alpha/beta hydrolase fold; KEGG: noc:Noc_1448 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein domain-containing protein 2450867..2451622 Rubrobacter xylanophilus DSM 9941 4115506 YP_645177.1 CDS Rxyl_2438 NC_008148.1 2451624 2453027 D KEGG: noc:Noc_1451 hypothetical protein; hypothetical protein 2451624..2453027 Rubrobacter xylanophilus DSM 9941 4115507 YP_645178.1 CDS Rxyl_2439 NC_008148.1 2453200 2454345 D hypothetical protein 2453200..2454345 Rubrobacter xylanophilus DSM 9941 4115508 YP_645179.1 CDS Rxyl_2440 NC_008148.1 2454499 2455395 D PFAM: peptidase S15; KEGG: bur:Bcep18194_B2670 alpha/beta hydrolase; peptidase S15 2454499..2455395 Rubrobacter xylanophilus DSM 9941 4115509 YP_645180.1 CDS Rxyl_2441 NC_008148.1 2455654 2455887 D TIGRFAM: Putative regulatory protein, FmdB; KEGG: sco:SCO2357 hypothetical protein; FmdB transcriptional regulator 2455654..2455887 Rubrobacter xylanophilus DSM 9941 4115510 YP_645181.1 CDS Rxyl_2442 NC_008148.1 2455892 2456287 D PFAM: protein of unknown function DUF309; KEGG: gme:Gmet_3375 protein of unknown function DUF309; hypothetical protein 2455892..2456287 Rubrobacter xylanophilus DSM 9941 4115511 YP_645182.1 CDS Rxyl_2443 NC_008148.1 2456416 2457243 D PFAM: alpha/beta hydrolase fold; KEGG: tte:TTE0552 predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamily); alpha/beta hydrolase fold protein domain-containing protein 2456416..2457243 Rubrobacter xylanophilus DSM 9941 4115512 YP_645183.1 CDS Rxyl_2444 NC_008148.1 2457791 2459494 D KEGG: mta:Moth_0027 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central region DNA polymerase III, delta; SMART: ATPase; DNA polymerase III subunits gamma and tau 2457791..2459494 Rubrobacter xylanophilus DSM 9941 4115513 YP_645184.1 CDS Rxyl_2445 NC_008148.1 2459505 2462039 R PFAM: peptidase M23B Lytic transglycosylase, catalytic; KEGG: mta:Moth_0315 peptidase M23B; peptidase M23B complement(2459505..2462039) Rubrobacter xylanophilus DSM 9941 4115514 YP_645185.1 CDS Rxyl_2446 NC_008148.1 2462124 2462789 R KEGG: dme:CG4898-PK CG4898 gene product from transcript CG4898-RK; hypothetical protein complement(2462124..2462789) Rubrobacter xylanophilus DSM 9941 4115515 YP_645186.1 CDS Rxyl_2447 NC_008148.1 2462939 2463529 D KEGG: gka:GK3040 hypothetical protein; hypothetical protein 2462939..2463529 Rubrobacter xylanophilus DSM 9941 4115516 YP_645187.1 CDS Rxyl_2448 NC_008148.1 2463533 2463901 D KEGG: gka:GK3041 hypothetical protein; hypothetical protein 2463533..2463901 Rubrobacter xylanophilus DSM 9941 4115517 YP_645188.1 CDS Rxyl_2449 NC_008148.1 2463898 2464488 R PFAM: regulatory protein, TetR; KEGG: sma:SAV4903 putative TetR-family transcriptional regulator; TetR family transcriptional regulator complement(2463898..2464488) Rubrobacter xylanophilus DSM 9941 4115518 YP_645189.1 CDS Rxyl_2450 NC_008148.1 2464649 2464891 R hypothetical protein complement(2464649..2464891) Rubrobacter xylanophilus DSM 9941 4115519 YP_645190.1 CDS Rxyl_2451 NC_008148.1 2465005 2465658 D hypothetical protein 2465005..2465658 Rubrobacter xylanophilus DSM 9941 4115520 YP_645191.1 CDS Rxyl_2452 NC_008148.1 2465606 2466358 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ilo:IL1485 short chain dehydrogenase family protein; short chain dehydrogenase complement(2465606..2466358) Rubrobacter xylanophilus DSM 9941 4115521 YP_645192.1 CDS Rxyl_2453 NC_008148.1 2466361 2468469 R PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: sru:SRU_1459 fatty oxidation complex, alpha subunit; short chain enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase complement(2466361..2468469) Rubrobacter xylanophilus DSM 9941 4115522 YP_645193.1 CDS Rxyl_2454 NC_008148.1 2468473 2469783 R PFAM: Thiolase; KEGG: sru:SRU_1460 fatty oxidation complex, beta subunit; 3-ketoacyl-CoA thiolase complement(2468473..2469783) Rubrobacter xylanophilus DSM 9941 4115523 YP_645194.1 CDS Rxyl_2455 NC_008148.1 2469795 2470991 R PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: cef:CE0723 putative glutaryl-CoA dehydrogenase precursor; acyl-CoA dehydrogenase-like protein complement(2469795..2470991) Rubrobacter xylanophilus DSM 9941 4115524 YP_645195.1 CDS gabD2 NC_008148.1 2471050 2472675 R NADP-dependent semialdehyde dehydrogenase; part of alternative pathway from alpha-ketoglutarate to succinate; succinate-semialdehyde dehydrogenase complement(2471050..2472675) Rubrobacter xylanophilus DSM 9941 4115298 YP_645196.1 CDS Rxyl_2457 NC_008148.1 2472684 2473559 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gga:421130 similar to Zgc:63829; short-chain dehydrogenase/reductase SDR complement(2472684..2473559) Rubrobacter xylanophilus DSM 9941 4115299 YP_645197.1 CDS Rxyl_2458 NC_008148.1 2473813 2475651 D PFAM: AMP-dependent synthetase and ligase; KEGG: plt:Plut_0972 long-chain fatty-acid-CoA ligase; AMP-dependent synthetase and ligase 2473813..2475651 Rubrobacter xylanophilus DSM 9941 4115300 YP_645198.1 CDS Rxyl_2459 NC_008148.1 2475706 2476056 R PFAM: Sterol-binding; KEGG: ade:Adeh_2343 putative sterol carrier protein; sterol-binding protein complement(2475706..2476056) Rubrobacter xylanophilus DSM 9941 4115301 YP_645199.1 CDS Rxyl_2460 NC_008148.1 2476394 2476894 D PFAM: protein of unknown function DUF151; KEGG: aae:aq_283 hypothetical protein; hypothetical protein 2476394..2476894 Rubrobacter xylanophilus DSM 9941 4115302 YP_645200.1 CDS Rxyl_2461 NC_008148.1 2477006 2477923 D PFAM: Xylose isomerase-like TIM barrel; KEGG: rru:Rru_A0440 xylose isomerase-like TIM barrel; xylose isomerase-like protein 2477006..2477923 Rubrobacter xylanophilus DSM 9941 4115303 YP_645201.1 CDS Rxyl_2462 NC_008148.1 2477933 2478181 R hypothetical protein complement(2477933..2478181) Rubrobacter xylanophilus DSM 9941 4115304 YP_645202.1 CDS Rxyl_2463 NC_008148.1 2478195 2479259 R KEGG: sru:SRU_2493 uncharacterized protein family UPF0027; hypothetical protein complement(2478195..2479259) Rubrobacter xylanophilus DSM 9941 4115305 YP_645203.1 CDS Rxyl_2464 NC_008148.1 2479275 2481017 R PFAM: biotin/lipoyl attachment phosphoribosylglycinamide synthetase ATP-dependent carboxylate-amine ligase-like, ATP-grasp Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain-like biotin carboxylase-like; KEGG: hma:rrnB0263 carbamoyl phosphate synthase L chain; carbamoyl-phosphate synthase L chain, ATP-binding protein complement(2479275..2481017) Rubrobacter xylanophilus DSM 9941 4115306 YP_645204.1 CDS Rxyl_2465 NC_008148.1 2481018 2481239 R hypothetical protein complement(2481018..2481239) Rubrobacter xylanophilus DSM 9941 4115307 YP_645205.1 CDS Rxyl_2466 NC_008148.1 2481236 2482888 R PFAM: carboxyl transferase; KEGG: nph:NP4364A acyl-CoA carboxylase 2, carboxyltransferase component (beta subunit); carboxyl transferase complement(2481236..2482888) Rubrobacter xylanophilus DSM 9941 4115308 YP_645206.1 CDS Rxyl_2467 NC_008148.1 2482919 2484028 D PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: gka:GK2381 leucine dehydrogenase; leucine dehydrogenase 2482919..2484028 Rubrobacter xylanophilus DSM 9941 4115309 YP_645207.1 CDS Rxyl_2468 NC_008148.1 2484312 2485298 D PFAM: periplasmic binding protein; KEGG: sth:STH1929 iron ABC transporter substrate-binding protein; periplasmic binding protein 2484312..2485298 Rubrobacter xylanophilus DSM 9941 4115310 YP_645208.1 CDS Rxyl_2469 NC_008148.1 2485305 2486180 R KEGG: mta:Moth_0141 pantoate--beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; pantothenate synthetase complement(2485305..2486180) Rubrobacter xylanophilus DSM 9941 4115311 YP_645209.1 CDS Rxyl_2470 NC_008148.1 2486177 2487004 R PFAM: cobalt transport protein; KEGG: tte:TTE2259 ABC-type cobalt transport system, permease component CbiQ and related transporters; cobalt transport protein complement(2486177..2487004) Rubrobacter xylanophilus DSM 9941 4115312 YP_645210.1 CDS Rxyl_2471 NC_008148.1 2487004 2487870 R PFAM: ABC transporter related; SMART: ATPase; KEGG: cpe:CPE2373 probable ABC transporter; ABC transporter-like protein complement(2487004..2487870) Rubrobacter xylanophilus DSM 9941 4115313 YP_645211.1 CDS Rxyl_2472 NC_008148.1 2487867 2488721 R PFAM: ABC transporter related; SMART: ATPase; KEGG: tte:TTE2261 ABC-type cobalt transport system, ATPase component; ABC transporter-like protein complement(2487867..2488721) Rubrobacter xylanophilus DSM 9941 4115314 YP_645212.1 CDS Rxyl_2473 NC_008148.1 2488726 2489313 R KEGG: sth:STH1901 hypothetical protein; hypothetical protein complement(2488726..2489313) Rubrobacter xylanophilus DSM 9941 4115315 YP_645213.1 CDS Rxyl_2474 NC_008148.1 2489392 2490183 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sai:Saci_2130 oxidoreductase; short-chain dehydrogenase/reductase SDR complement(2489392..2490183) Rubrobacter xylanophilus DSM 9941 4115316 YP_645214.1 CDS Rxyl_2475 NC_008148.1 2490185 2491447 R TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20 peptidase dimerisation; KEGG: mlo:mlr1185 succinyl-diaminopimelate desuccinylase; acetylornithine deacetylase complement(2490185..2491447) Rubrobacter xylanophilus DSM 9941 4114742 YP_645215.1 CDS Rxyl_2476 NC_008148.1 2491526 2492857 R PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_A2617 general substrate transporter:major facilitator superfamily MFS_1; major facilitator transporter complement(2491526..2492857) Rubrobacter xylanophilus DSM 9941 4114743 YP_645216.1 CDS Rxyl_2477 NC_008148.1 2492943 2494574 R PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: gka:GK0373 acetolactate synthaselarge subunit; thiamine pyrophosphate enzyme-like TPP binding region complement(2492943..2494574) Rubrobacter xylanophilus DSM 9941 4114744 YP_645217.1 CDS Rxyl_2478 NC_008148.1 2494656 2495981 R PFAM: biotin/lipoyl attachment catalytic domain of components of various dehydrogenase complexes E3 binding; KEGG: sth:STH2160 branched-chain alpha-keto acid dehydrogenase E2; branched-chain alpha-keto acid dehydrogenase E2 component complement(2494656..2495981) Rubrobacter xylanophilus DSM 9941 4114745 YP_645218.1 CDS Rxyl_2479 NC_008148.1 2495993 2496979 R PFAM: Transketolase, central region Transketolase-like; KEGG: oih:OB1865 branched-chain alpha-keto acid dehydrogenase E1 beta chain (3-methyl-2-oxobutanoate dehydrogenase (lipoamide) ); branched-chain alpha-keto acid dehydrogenase E1 component complement(2495993..2496979) Rubrobacter xylanophilus DSM 9941 4114746 YP_645219.1 CDS Rxyl_2480 NC_008148.1 2496982 2497983 R PFAM: dehydrogenase, E1 component; KEGG: bha:BH2763 branched-chain alpha-keto acid dehydrogenase E1; branched-chain alpha-keto acid dehydrogenase E1 component complement(2496982..2497983) Rubrobacter xylanophilus DSM 9941 4114747 YP_645220.1 CDS Rxyl_2481 NC_008148.1 2498120 2499817 R KEGG: tte:TTE2389 Methylmalonyl-CoA mutase, N-terminal domain/subunit; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; PFAM: methylmalonyl-CoA mutase; methylmalonyl-CoA mutase complement(2498120..2499817) Rubrobacter xylanophilus DSM 9941 4114748 YP_645221.1 CDS Rxyl_2482 NC_008148.1 2499897 2501084 R PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: chy:CHY_1350 butyryl-CoA dehydrogenase; butyryl-CoA dehydrogenase complement(2499897..2501084) Rubrobacter xylanophilus DSM 9941 4114749 YP_645222.1 CDS Rxyl_2483 NC_008148.1 2501139 2502077 R KEGG: neu:NE0117 hypothetical protein; hypothetical protein complement(2501139..2502077) Rubrobacter xylanophilus DSM 9941 4114750 YP_645223.1 CDS Rxyl_2484 NC_008148.1 2502079 2502549 R KEGG: mth:MTH1076 hypothetical protein; hypothetical protein complement(2502079..2502549) Rubrobacter xylanophilus DSM 9941 4114751 YP_645224.1 CDS Rxyl_2486 NC_008148.1 2503764 2504585 R PFAM: transposase, IS4; KEGG: sru:SRU_0356 IS982 family transposase; IS4 family transposase complement(2503764..2504585) Rubrobacter xylanophilus DSM 9941 4114752 YP_645225.1 CDS Rxyl_2488 NC_008148.1 2505226 2505852 R KEGG: cef:CE1567 putative transposase; putative transposase complement(2505226..2505852) Rubrobacter xylanophilus DSM 9941 4114753 YP_645226.1 CDS Rxyl_2489 NC_008148.1 2505893 2506216 D hypothetical protein 2505893..2506216 Rubrobacter xylanophilus DSM 9941 4114754 YP_645227.1 CDS Rxyl_2490 NC_008148.1 2506315 2506515 D hypothetical protein 2506315..2506515 Rubrobacter xylanophilus DSM 9941 4114755 YP_645228.1 CDS Rxyl_2491 NC_008148.1 2506563 2506814 D hypothetical protein 2506563..2506814 Rubrobacter xylanophilus DSM 9941 4114756 YP_645229.1 CDS Rxyl_2493 NC_008148.1 2506989 2507414 D hypothetical protein 2506989..2507414 Rubrobacter xylanophilus DSM 9941 4114757 YP_645230.1 CDS Rxyl_2494 NC_008148.1 2507596 2508837 D PFAM: FAD dependent oxidoreductase; KEGG: tcx:Tcr_1351 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2507596..2508837 Rubrobacter xylanophilus DSM 9941 4114758 YP_645231.1 CDS Rxyl_2495 NC_008148.1 2508857 2509123 D KEGG: aci:ACIAD2551 sarcosine oxidase subunit D; sarcosine oxidase subunit delta 2508857..2509123 Rubrobacter xylanophilus DSM 9941 4114759 YP_645232.1 CDS Rxyl_2496 NC_008148.1 2509116 2512049 D PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: tcx:Tcr_1349 aminomethyltransferase; aminomethyltransferase 2509116..2512049 Rubrobacter xylanophilus DSM 9941 4114760 YP_645233.1 CDS Rxyl_2497 NC_008148.1 2512083 2512757 D KEGG: aci:ACIAD2549 putative sarcosine oxidase gamma subunit protein (SoxG); hypothetical protein 2512083..2512757 Rubrobacter xylanophilus DSM 9941 4114761 YP_645234.1 CDS Rxyl_2498 NC_008148.1 2512789 2514129 D PFAM: glutamine synthetase, catalytic region; KEGG: psp:PSPPH_2916 glutamine synthetase, type III; L-glutamine synthetase 2512789..2514129 Rubrobacter xylanophilus DSM 9941 4117087 YP_645235.1 CDS Rxyl_2499 NC_008148.1 2514142 2515059 D PFAM: glutamine amidotransferase, class-II; KEGG: psb:Psyr_2274 glutamine amidotransferase, class-II; glutamate synthase (NADPH) GltB1 subunit 2514142..2515059 Rubrobacter xylanophilus DSM 9941 4117088 YP_645236.1 CDS Rxyl_2500 NC_008148.1 2515059 2515736 D PFAM: glutamate synthase, alpha subunit-like; KEGG: pst:PSPTO2584 hypothetical protein; glutamate synthase (NADPH) GltB3 subunit 2515059..2515736 Rubrobacter xylanophilus DSM 9941 4117089 YP_645237.1 CDS Rxyl_2501 NC_008148.1 2515739 2517121 D PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase ferredoxin-dependent glutamate synthase; KEGG: pub:SAR11_1315 glutamate synthase large subunit; glutamate synthase (NADPH) GltB2 subunit 2515739..2517121 Rubrobacter xylanophilus DSM 9941 4117090 YP_645238.1 CDS Rxyl_2505 NC_008148.1 2520326 2520988 D PFAM: helix-turn-helix motif Cupin 2, conserved barrel; KEGG: aci:ACIAD2530 putative transcriptional regulator; XRE family transcriptional regulator 2520326..2520988 Rubrobacter xylanophilus DSM 9941 4117091 YP_645239.1 CDS Rxyl_2506 NC_008148.1 2521101 2521577 R PFAM: transposase, IS4; KEGG: nfa:nfa47770 putative transposase; IS4 family transposase complement(2521101..2521577) Rubrobacter xylanophilus DSM 9941 4117092 YP_645240.1 CDS Rxyl_2507 NC_008148.1 2521595 2521972 R KEGG: sco:SCP1.214 putative transposase; transposase complement(2521595..2521972) Rubrobacter xylanophilus DSM 9941 4117093 YP_645241.1 CDS Rxyl_2508 NC_008148.1 2522044 2522427 R hypothetical protein complement(2522044..2522427) Rubrobacter xylanophilus DSM 9941 4117094 YP_645242.1 CDS Rxyl_2509 NC_008148.1 2522741 2525338 R PFAM: Hemolysin-type calcium-binding region; KEGG: dde:Dde_1416 hypothetical protein; hemolysin-type calcium-binding region complement(2522741..2525338) Rubrobacter xylanophilus DSM 9941 4117095 YP_645243.1 CDS Rxyl_2510 NC_008148.1 2526117 2528039 D PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase, dimerisation and phosphoacceptor region PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: gsu:GSU0253 sensory box histidine kinase; multi-sensor signal transduction histidine kinase 2526117..2528039 Rubrobacter xylanophilus DSM 9941 4117096 YP_645244.1 CDS Rxyl_2511 NC_008148.1 2528029 2528718 D PFAM: regulatory protein, LuxR response regulator receiver Sigma-70, region 4 type 2; KEGG: pst:PSPTO2130 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 2528029..2528718 Rubrobacter xylanophilus DSM 9941 4117097 YP_645245.1 CDS Rxyl_2512 NC_008148.1 2528732 2529217 D hypothetical protein 2528732..2529217 Rubrobacter xylanophilus DSM 9941 4117098 YP_645246.1 CDS Rxyl_2513 NC_008148.1 2529299 2529685 R KEGG: nfa:nfa48360 putative transposase; putative transposase complement(2529299..2529685) Rubrobacter xylanophilus DSM 9941 4117099 YP_645247.1 CDS Rxyl_2514 NC_008148.1 2529703 2530080 R KEGG: sco:SCP1.214 putative transposase; putative transposase complement(2529703..2530080) Rubrobacter xylanophilus DSM 9941 4117100 YP_645248.1 CDS Rxyl_2515 NC_008148.1 2530152 2530433 R KEGG: sme:SMb20060 probable ISRm5 transposase protein; hypothetical protein complement(2530152..2530433) Rubrobacter xylanophilus DSM 9941 4117101 YP_645249.1 CDS Rxyl_2517 NC_008148.1 2530954 2531910 R PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: gme:Gmet_1162 tetrahydrofolate dehydrogenase/cyclohydrolase; methylenetetrahydrofolate dehydrogenase (NADP+) complement(2530954..2531910) Rubrobacter xylanophilus DSM 9941 4117102 YP_645250.1 CDS Rxyl_2518 NC_008148.1 2531920 2532501 R PFAM: Formiminotransferase-cyclodeaminase; KEGG: mca:MCA0507 methenyltetrahydrofolate cyclohydrolase; formimidoyltetrahydrofolate cyclodeaminase complement(2531920..2532501) Rubrobacter xylanophilus DSM 9941 4117103 YP_645251.1 CDS Rxyl_2519 NC_008148.1 2532498 2534219 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(2532498..2534219) Rubrobacter xylanophilus DSM 9941 4117104 YP_645252.1 CDS Rxyl_2520 NC_008148.1 2534312 2534983 R KEGG: mlo:mll7314 hypothetical protein; hypothetical protein complement(2534312..2534983) Rubrobacter xylanophilus DSM 9941 4117105 YP_645253.1 CDS Rxyl_2521 NC_008148.1 2535203 2535631 R PFAM: UspA; KEGG: dvu:DVU0893 universal stress protein family; hypothetical protein complement(2535203..2535631) Rubrobacter xylanophilus DSM 9941 4115584 YP_645254.1 CDS Rxyl_2522 NC_008148.1 2535628 2537079 R PFAM: amino acid permease-associated region; KEGG: sme:SMc02616 putative permease transmembrane protein; amino acid permease-associated protein complement(2535628..2537079) Rubrobacter xylanophilus DSM 9941 4115585 YP_645255.1 CDS Rxyl_2523 NC_008148.1 2537255 2537680 R KEGG: sme:SMc02618 hypothetical protein; hypothetical protein complement(2537255..2537680) Rubrobacter xylanophilus DSM 9941 4115586 YP_645256.1 CDS Rxyl_2524 NC_008148.1 2537683 2537973 R KEGG: sme:SMc02619 hypothetical protein; hypothetical protein complement(2537683..2537973) Rubrobacter xylanophilus DSM 9941 4115587 YP_645257.1 CDS Rxyl_2528 NC_008148.1 2541142 2541963 R PFAM: transposase, IS4; KEGG: sru:SRU_0356 IS982 family transposase; IS4 family transposase complement(2541142..2541963) Rubrobacter xylanophilus DSM 9941 4115588 YP_645258.1 CDS Rxyl_2529 NC_008148.1 2542337 2547193 D PFAM: NAD-glutamate dehydrogenase; KEGG: eba:ebA3619 NAD-glutamate dehydrogenase; glutamate dehydrogenase 2542337..2547193 Rubrobacter xylanophilus DSM 9941 4115589 YP_645259.1 CDS Rxyl_2530 NC_008148.1 2547190 2548365 R PFAM: Thiolase; KEGG: gka:GK3397 acetyl-CoA acetyltransferase; acetyl-CoA C-acetyltransferase complement(2547190..2548365) Rubrobacter xylanophilus DSM 9941 4115590 YP_645260.1 CDS Rxyl_2531 NC_008148.1 2548496 2550109 D PFAM: AMP-dependent synthetase and ligase; KEGG: chy:CHY_0572 acetyl-coenzyme A synthetase family protein; AMP-dependent synthetase and ligase 2548496..2550109 Rubrobacter xylanophilus DSM 9941 4115591 YP_645261.1 CDS Rxyl_2532 NC_008148.1 2550099 2550851 R PFAM: periplasmic binding protein; KEGG: sco:SCO1618 hypothetical protein; periplasmic binding protein complement(2550099..2550851) Rubrobacter xylanophilus DSM 9941 4115592 YP_645262.1 CDS Rxyl_2533 NC_008148.1 2550865 2551815 R KEGG: tko:TK0329 lysine/arginine/ornithine transport system kinase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; SMART: ATPase; LAO/AO transport system ATPase complement(2550865..2551815) Rubrobacter xylanophilus DSM 9941 4115593 YP_645263.1 CDS Rxyl_2534 NC_008148.1 2551815 2553068 R TIGRFAM: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment catalytic domain of components of various dehydrogenase complexes E3 binding; KEGG: bha:BH2205 dihydrolipoamide succinyltransferase; 2-oxoglutarate dehydrogenase E2 component complement(2551815..2553068) Rubrobacter xylanophilus DSM 9941 4115594 YP_645264.1 CDS sucA NC_008148.1 2553107 2555947 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(2553107..2555947) Rubrobacter xylanophilus DSM 9941 4115595 YP_645265.1 CDS Rxyl_2536 NC_008148.1 2556132 2556413 R PFAM: Tetratricopeptide TPR_2; KEGG: aae:aq_1409 hypothetical protein; hypothetical protein complement(2556132..2556413) Rubrobacter xylanophilus DSM 9941 4115596 YP_645266.1 CDS Rxyl_2537 NC_008148.1 2556506 2557738 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: sth:STH832 cystathionine gamma-lyase; cystathionine gamma-synthase 2556506..2557738 Rubrobacter xylanophilus DSM 9941 4115597 YP_645267.1 CDS Rxyl_2538 NC_008148.1 2557768 2560899 R PFAM: coagulation factor 5/8 type-like; KEGG: mca:MCA1217 metalloprotease, putative; coagulation factor 5/8 type-like protein complement(2557768..2560899) Rubrobacter xylanophilus DSM 9941 4115598 YP_645268.1 CDS Rxyl_2539 NC_008148.1 2561148 2561501 D PFAM: protein of unknown function DUF107; KEGG: cte:CT0795 NfeD protein; hypothetical protein 2561148..2561501 Rubrobacter xylanophilus DSM 9941 4115599 YP_645269.1 CDS Rxyl_2540 NC_008148.1 2561488 2563545 R PFAM: protein of unknown function DUF255; KEGG: chy:CHY_1723 hypothetical protein; hypothetical protein complement(2561488..2563545) Rubrobacter xylanophilus DSM 9941 4115600 YP_645270.1 CDS Rxyl_2541 NC_008148.1 2563969 2564994 D PFAM: fructose-bisphosphate aldolase, class-I; KEGG: bja:bll1520 fructose bisphosphate aldolase; fructose-bisphosphate aldolase 2563969..2564994 Rubrobacter xylanophilus DSM 9941 4115601 YP_645271.1 CDS Rxyl_2542 NC_008148.1 2565047 2565859 R PFAM: peptidase C60, sortase A and B; KEGG: ade:Adeh_0244 LigA; peptidase C60, sortase A and B complement(2565047..2565859) Rubrobacter xylanophilus DSM 9941 4115602 YP_645272.1 CDS Rxyl_2543 NC_008148.1 2565868 2566422 R PFAM: surface protein from Gram-positive cocci, anchor region; surface protein complement(2565868..2566422) Rubrobacter xylanophilus DSM 9941 4115603 YP_645273.1 CDS Rxyl_2544 NC_008148.1 2566612 2569347 D PFAM: GCN5-related N-acetyltransferase CoA-binding; KEGG: ava:Ava_4664 GCN5-related N-acetyltransferase; CoA-binding protein 2566612..2569347 Rubrobacter xylanophilus DSM 9941 4115375 YP_645274.1 CDS Rxyl_2545 NC_008148.1 2569409 2569702 R hypothetical protein complement(2569409..2569702) Rubrobacter xylanophilus DSM 9941 4115376 YP_645275.1 CDS Rxyl_2546 NC_008148.1 2569995 2570519 D PFAM: protein of unknown function DUF125, transmembrane; KEGG: gox:GOX1978 hypothetical protein; hypothetical protein 2569995..2570519 Rubrobacter xylanophilus DSM 9941 4115377 YP_645276.1 CDS Rxyl_2547 NC_008148.1 2570516 2571181 R TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: ttj:TTHA0240 lipoate-protein ligase B; lipoate-protein ligase B complement(2570516..2571181) Rubrobacter xylanophilus DSM 9941 4115378 YP_645277.1 CDS Rxyl_2548 NC_008148.1 2571184 2572149 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(2571184..2572149) Rubrobacter xylanophilus DSM 9941 4115379 YP_645278.1 CDS Rxyl_2549 NC_008148.1 2572303 2573718 R TIGRFAM: Dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase glucose-inhibited division protein A pyridine nucleotide-disulphide oxidoreductase dimerisation region HI0933-like protein FAD dependent oxidoreductase; KEGG: gka:GK2379 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase complement(2572303..2573718) Rubrobacter xylanophilus DSM 9941 4115380 YP_645279.1 CDS Rxyl_2550 NC_008148.1 2573739 2574599 R KEGG: mta:Moth_1840 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycolase zinc finger, Fpg-type; DNA-(apurinic or apyrimidinic site) lyase/formamidopyrimidine-DNA glycosylase complement(2573739..2574599) Rubrobacter xylanophilus DSM 9941 4115381 YP_645280.1 CDS Rxyl_2551 NC_008148.1 2574608 2575339 R PFAM: TENA/THI-4 protein; KEGG: mag:amb2534 hypothetical protein; TENA/THI-4 protein complement(2574608..2575339) Rubrobacter xylanophilus DSM 9941 4115382 YP_645281.1 CDS Rxyl_2552 NC_008148.1 2576034 2576282 D TIGRFAM: molybdopterin converting factor, subunit 1 MoaD, archaeal; PFAM: thiamineS; KEGG: bbr:BB1329 molybdopterin converting factor; molybdopterin converting factor subunit 1 2576034..2576282 Rubrobacter xylanophilus DSM 9941 4115383 YP_645282.1 CDS Rxyl_2553 NC_008148.1 2576287 2576727 D PFAM: molybdopterin biosynthesis MoaE; KEGG: sth:STH3180 molybdopterin converting factor-like protein; molybdopterin synthase subunit MoaE 2576287..2576727 Rubrobacter xylanophilus DSM 9941 4115384 YP_645283.1 CDS Rxyl_2554 NC_008148.1 2576777 2577259 D PFAM: NUDIX hydrolase; KEGG: plt:Plut_0490 NUDIX/MutT family protein; NUDIX hydrolase 2576777..2577259 Rubrobacter xylanophilus DSM 9941 4115385 YP_645284.1 CDS Rxyl_2555 NC_008148.1 2577252 2577983 D PFAM: Abortive infection protein; KEGG: mta:Moth_1913 abortive infection protein; abortive infection protein 2577252..2577983 Rubrobacter xylanophilus DSM 9941 4115386 YP_645285.1 CDS Rxyl_2556 NC_008148.1 2577943 2579223 R PFAM: regulatory protein, MerR Citrate synthase; KEGG: bps:BPSL0890 putative citrate synthase; citrate synthase complement(2577943..2579223) Rubrobacter xylanophilus DSM 9941 4115387 YP_645286.1 CDS Rxyl_2557 NC_008148.1 2579308 2580483 D PFAM: Citrate synthase; KEGG: ccr:CC3642 citrate synthase; citrate synthase 2579308..2580483 Rubrobacter xylanophilus DSM 9941 4115388 YP_645287.1 CDS Rxyl_2558 NC_008148.1 2580764 2582026 R TIGRFAM: Competence-damaged protein; PFAM: molybdopterin binding domain CinA-like; KEGG: tte:TTE1375 predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; competence/damage-inducible protein cinA complement(2580764..2582026) Rubrobacter xylanophilus DSM 9941 4115389 YP_645288.1 CDS Rxyl_2559 NC_008148.1 2582050 2582652 D KEGG: mta:Moth_0566 metal dependent phosphohydrolase; TIGRFAM: conserved hypothetical protein uncharacterized domain HDIG; PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 2582050..2582652 Rubrobacter xylanophilus DSM 9941 4115390 YP_645289.1 CDS Rxyl_2560 NC_008148.1 2582611 2583174 R PFAM: membrane-bound metal-dependent hydrolase; KEGG: mag:amb4172 predicted membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase complement(2582611..2583174) Rubrobacter xylanophilus DSM 9941 4115391 YP_645290.1 CDS Rxyl_2561 NC_008148.1 2583222 2585120 D KEGG: tfu:Tfu_0334 hypothetical protein; hypothetical protein 2583222..2585120 Rubrobacter xylanophilus DSM 9941 4115392 YP_645291.1 CDS Rxyl_2562 NC_008148.1 2585038 2585397 R PFAM: protein of unknown function DUF488; KEGG: gsu:GSU3442 hypothetical protein; hypothetical protein complement(2585038..2585397) Rubrobacter xylanophilus DSM 9941 4115393 YP_645292.1 CDS Rxyl_2563 NC_008148.1 2585408 2586250 R PFAM: (2R)-phospho-3-sulfolactate synthase, ComA; KEGG: cgb:cg2797 hypothetical protein; phosphosulfolactate synthase complement(2585408..2586250) Rubrobacter xylanophilus DSM 9941 4115278 YP_645293.1 CDS Rxyl_2564 NC_008148.1 2586265 2587638 R PFAM: MmgE/PrpD; KEGG: cgb:cg2796 MmgE/PrpD family protein; 2-methylcitrate dehydratase complement(2586265..2587638) Rubrobacter xylanophilus DSM 9941 4115279 YP_645294.1 CDS Rxyl_2565 NC_008148.1 2587757 2588146 R TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase; KEGG: ade:Adeh_3128 alkylhydroperoxidase AhpD core; alkylhydroperoxidase AhpD core complement(2587757..2588146) Rubrobacter xylanophilus DSM 9941 4115280 YP_645295.1 CDS Rxyl_2566 NC_008148.1 2588166 2588777 R KEGG: sto:ST0827 hypothetical protein; polyketide biosynthesis dithiol-disulfide isomerase-like protein complement(2588166..2588777) Rubrobacter xylanophilus DSM 9941 4115281 YP_645296.1 CDS Rxyl_2567 NC_008148.1 2588905 2590251 R KEGG: tvo:TVN0083 cytochrome bd-I oxidase subunit I; cytochrome bd-type quinol oxidase subunit 1-like protein complement(2588905..2590251) Rubrobacter xylanophilus DSM 9941 4115282 YP_645297.1 CDS Rxyl_2568 NC_008148.1 2590650 2590925 R hypothetical protein complement(2590650..2590925) Rubrobacter xylanophilus DSM 9941 4115283 YP_645298.1 CDS Rxyl_2569 NC_008148.1 2590976 2592058 D KEGG: mth:MTH1761 hypothetical protein; hypothetical protein 2590976..2592058 Rubrobacter xylanophilus DSM 9941 4115284 YP_645299.1 CDS Rxyl_2570 NC_008148.1 2592055 2592513 R PFAM: protein of unknown function DUF192; KEGG: lic:LIC12494 hypothetical protein; hypothetical protein complement(2592055..2592513) Rubrobacter xylanophilus DSM 9941 4115285 YP_645300.1 CDS Rxyl_2571 NC_008148.1 2592510 2593220 R PFAM: Threonyl/alanyl tRNA synthetase, SAD; KEGG: tac:Ta0124m alanyl-tRNA synthetase related protein; Ala-tRNA(Pro) hydrolase complement(2592510..2593220) Rubrobacter xylanophilus DSM 9941 4115286 YP_645301.1 CDS Rxyl_2572 NC_008148.1 2593217 2594029 R TIGRFAM: Histidinol phosphate phosphatase, HisJ; PFAM: PHP-like; KEGG: mta:Moth_0817 histidinol phosphate phosphatase, HisJ; histidinol phosphate phosphatase HisJ complement(2593217..2594029) Rubrobacter xylanophilus DSM 9941 4115287 YP_645302.1 CDS Rxyl_2573 NC_008148.1 2594120 2595115 D TIGRFAM: calcium/proton exchanger; PFAM: sodium/calcium exchanger membrane region; KEGG: mca:MCA0142 calcium/proton exchanger; calcium/proton exchanger 2594120..2595115 Rubrobacter xylanophilus DSM 9941 4115288 YP_645303.1 CDS Rxyl_2574 NC_008148.1 2595112 2595957 R PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: bur:Bcep18194_B0266 hypothetical protein; type 12 methyltransferase complement(2595112..2595957) Rubrobacter xylanophilus DSM 9941 4115289 YP_645304.1 CDS Rxyl_2575 NC_008148.1 2595960 2596979 R PFAM: glycosyl transferase, group 1; KEGG: sru:SRU_2666 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase complement(2595960..2596979) Rubrobacter xylanophilus DSM 9941 4115290 YP_645305.1 CDS Rxyl_2576 NC_008148.1 2596990 2597367 R PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: csa:Csal_1177 hypothetical protein; putative 6-pyruvoyl tetrahydropterin synthase complement(2596990..2597367) Rubrobacter xylanophilus DSM 9941 4115291 YP_645306.1 CDS Rxyl_2577 NC_008148.1 2597373 2598401 R PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: nph:NP1340A oxidoreductase (probable Zn-dependent dehydrogenase , threonine 3-dehydrogenase); zinc-binding alcohol dehydrogenase complement(2597373..2598401) Rubrobacter xylanophilus DSM 9941 4115292 YP_645307.1 CDS Rxyl_2578 NC_008148.1 2598385 2599077 R KEGG: pca:Pcar_1445 riboflavin biosynthesis protein RibD; TIGRFAM: Riboflavin-specific deaminase-like; PFAM: bifunctional deaminase-reductase-like; 2, 5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase complement(2598385..2599077) Rubrobacter xylanophilus DSM 9941 4115293 YP_645308.1 CDS Rxyl_2579 NC_008148.1 2599162 2599542 D TIGRFAM: dihydroneopterin aldolase; KEGG: sth:STH3187 dihydroneopterin aldolase; dihydroneopterin aldolase 2599162..2599542 Rubrobacter xylanophilus DSM 9941 4115294 YP_645309.1 CDS Rxyl_2580 NC_008148.1 2599582 2600490 D PFAM: phospholipid/glycerol acyltransferase; KEGG: dvu:DVU0038 acyltransferase domain protein; phospholipid/glycerol acyltransferase 2599582..2600490 Rubrobacter xylanophilus DSM 9941 4115295 YP_645310.1 CDS Rxyl_2581 NC_008148.1 2600487 2601485 R PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: spb:M28_Spy0156 glycine betaine transport system permease protein; glycine betaine ABC transporter substrate-binding protein complement(2600487..2601485) Rubrobacter xylanophilus DSM 9941 4115296 YP_645311.1 CDS Rxyl_2582 NC_008148.1 2601487 2602380 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sco:SCO1620 glycine betaine transport system permease protein; twin-arginine translocation pathway signal protein complement(2601487..2602380) Rubrobacter xylanophilus DSM 9941 4115297 YP_645312.1 CDS Rxyl_2583 NC_008148.1 2602410 2603315 R PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sco:SCO1620 glycine betaine transport system permease protein; glycine betaine ABC transporter substrate-binding protein complement(2602410..2603315) Rubrobacter xylanophilus DSM 9941 4115044 YP_645313.1 CDS Rxyl_2584 NC_008148.1 2603340 2604221 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi02627 glycine betaine ABC transporter (permease); RBL01842; binding-protein-dependent transport system inner membrane protein complement(2603340..2604221) Rubrobacter xylanophilus DSM 9941 4115045 YP_645314.1 CDS Rxyl_2585 NC_008148.1 2604225 2605496 R KEGG: lin:lin1013 highly similar to glycine betaine ABC transporter (ATP-binding protein); TIGRFAM: glycine betaine/L-proline transport ATP binding subunit; PFAM: CBS ABC transporter related; SMART: ATPase; glycine betaine/L-proline transport ATP binding subunit complement(2604225..2605496) Rubrobacter xylanophilus DSM 9941 4115046 YP_645315.1 CDS Rxyl_2586 NC_008148.1 2606077 2608293 D PFAM: glycoside hydrolase, family 31; KEGG: lil:LA2944 Alpha-glucosidase II; alpha-glucosidase 2606077..2608293 Rubrobacter xylanophilus DSM 9941 4115047 YP_645316.1 CDS Rxyl_2587 NC_008148.1 2608290 2609648 R KEGG: lmf:LMOf2365_1052 hypothetical protein; L-fucose isomerase complement(2608290..2609648) Rubrobacter xylanophilus DSM 9941 4115048 YP_645317.1 CDS Rxyl_2588 NC_008148.1 2609645 2610781 R PFAM: phosphofructokinase; KEGG: mta:Moth_1234 phosphofructokinase; 6-phosphofructokinase complement(2609645..2610781) Rubrobacter xylanophilus DSM 9941 4115049 YP_645318.1 CDS Rxyl_2589 NC_008148.1 2610900 2611601 R PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mta:Moth_1310 regulatory protein GntR, HTH; GntR family transcriptional regulator complement(2610900..2611601) Rubrobacter xylanophilus DSM 9941 4115050 YP_645319.1 CDS Rxyl_2590 NC_008148.1 2611616 2612770 R PFAM: D-galactarate dehydratase/Altronate hydrolase-like; KEGG: pub:SAR11_0842 probable galactarate dehydratase; D-galactarate dehydratase/Altronate hydrolase-like protein complement(2611616..2612770) Rubrobacter xylanophilus DSM 9941 4115051 YP_645320.1 CDS Rxyl_2591 NC_008148.1 2612773 2613096 R KEGG: sto:ST2559 altronate hydrolase; altronate hydrolase complement(2612773..2613096) Rubrobacter xylanophilus DSM 9941 4115052 YP_645321.1 CDS Rxyl_2592 NC_008148.1 2613138 2613725 R KEGG: tfu:Tfu_1509 hypothetical protein; hypothetical protein complement(2613138..2613725) Rubrobacter xylanophilus DSM 9941 4115053 YP_645322.1 CDS Rxyl_2593 NC_008148.1 2613753 2614838 D PFAM: protein of unknown function DUF34; KEGG: sth:STH598 hypothetical protein; hypothetical protein 2613753..2614838 Rubrobacter xylanophilus DSM 9941 4115054 YP_645323.1 CDS Rxyl_2594 NC_008148.1 2614819 2615778 R PFAM: PfkB; KEGG: osa:B1078G07.32 contains ESTs AU029506(E31019),AU029505(E31019); PfkB protein complement(2614819..2615778) Rubrobacter xylanophilus DSM 9941 4115055 YP_645324.1 CDS Rxyl_2595 NC_008148.1 2615775 2616842 R KEGG: cac:CAC2918 mannose-6 phospate isomelase; phosphomannose isomerase-like protein complement(2615775..2616842) Rubrobacter xylanophilus DSM 9941 4115056 YP_645325.1 CDS Rxyl_2596 NC_008148.1 2617086 2619569 D TIGRFAM: alpha-1,2-mannosidase, putative; PFAM: glycosyl hydrolase 92; KEGG: sma:SAV7255 putative secreted protein; alpha-1,2-mannosidase 2617086..2619569 Rubrobacter xylanophilus DSM 9941 4115057 YP_645326.1 CDS Rxyl_2597 NC_008148.1 2619548 2620342 D KEGG: sma:SAV2253 hypothetical protein; hypothetical protein 2619548..2620342 Rubrobacter xylanophilus DSM 9941 4115058 YP_645327.1 CDS Rxyl_2598 NC_008148.1 2620335 2621483 D PFAM: PfkB; KEGG: gvi:gll0501 probable sugar kinase; PfkB protein 2620335..2621483 Rubrobacter xylanophilus DSM 9941 4115059 YP_645328.1 CDS Rxyl_2599 NC_008148.1 2621572 2625540 D TIGRFAM: alpha-1,2-mannosidase, putative; PFAM: coagulation factor 5/8 type-like Sad1/UNC-like-like glycosyl hydrolase 92; KEGG: sma:SAV2252 putative ATP/GTP-binding protein; alpha-1,2-mannosidase 2621572..2625540 Rubrobacter xylanophilus DSM 9941 4115060 YP_645329.1 CDS Rxyl_2600 NC_008148.1 2625590 2626639 D PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; SMART: Helix-turn-helix type 3; KEGG: sma:SAV1477 putative LacI-family transcriptional regulator; LacI family transcriptional regulator 2625590..2626639 Rubrobacter xylanophilus DSM 9941 4115061 YP_645330.1 CDS Rxyl_2601 NC_008148.1 2626727 2627503 D PFAM: ABC transporter related; SMART: ATPase; KEGG: sma:SAV5702 putative ABC transporter ATP-binding protein; ABC transporter-like protein 2626727..2627503 Rubrobacter xylanophilus DSM 9941 4115062 YP_645331.1 CDS Rxyl_2602 NC_008148.1 2627503 2628528 D PFAM: inner-membrane translocator; KEGG: mlo:mll3405 ribose ABC transporter, permease protein; inner-membrane translocator 2627503..2628528 Rubrobacter xylanophilus DSM 9941 4114683 YP_645332.1 CDS Rxyl_2603 NC_008148.1 2628556 2629572 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: mlo:mll3407 ribose ABC transporter, periplasmic binding protein; twin-arginine translocation pathway signal protein 2628556..2629572 Rubrobacter xylanophilus DSM 9941 4114684 YP_645333.1 CDS Rxyl_2604 NC_008148.1 2629656 2631209 D TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN-like; KEGG: fra:Francci3_4533 integral membrane protein MviN; integral membrane protein MviN 2629656..2631209 Rubrobacter xylanophilus DSM 9941 4114685 YP_645334.1 CDS Rxyl_2605 NC_008148.1 2631206 2631601 R hypothetical protein complement(2631206..2631601) Rubrobacter xylanophilus DSM 9941 4114686 YP_645335.1 CDS Rxyl_2606 NC_008148.1 2631621 2631833 R hypothetical protein complement(2631621..2631833) Rubrobacter xylanophilus DSM 9941 4114687 YP_645336.1 CDS Rxyl_2607 NC_008148.1 2631894 2632781 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: nfa:nfa26440 putative membrane protein; hypothetical protein complement(2631894..2632781) Rubrobacter xylanophilus DSM 9941 4114688 YP_645337.1 CDS Rxyl_2608 NC_008148.1 2632922 2633185 D PFAM: Transglycosylase-associated protein; KEGG: vpa:VP2170 putative transglycosylase associated gene; transglycosylase-associated protein 2632922..2633185 Rubrobacter xylanophilus DSM 9941 4114689 YP_645338.1 CDS Rxyl_2609 NC_008148.1 2633182 2633976 R TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase-like biotin/lipoate A/B protein ligase; KEGG: sth:STH1400 transcriptional repressor, BirA-like; biotin--acetyl-CoA-carboxylase ligase complement(2633182..2633976) Rubrobacter xylanophilus DSM 9941 4114690 YP_645339.1 CDS Rxyl_2610 NC_008148.1 2634045 2634713 D KEGG: lin:lin1535 hypothetical protein; hypothetical protein 2634045..2634713 Rubrobacter xylanophilus DSM 9941 4114691 YP_645340.1 CDS Rxyl_2611 NC_008148.1 2634710 2635168 R PFAM: UspA; KEGG: tbd:Tbd_2614 universal stress protein; hypothetical protein complement(2634710..2635168) Rubrobacter xylanophilus DSM 9941 4114692 YP_645341.1 CDS Rxyl_2612 NC_008148.1 2635266 2636441 D PFAM: GAF ATP-binding region, ATPase-like histidine kinase, dimerisation and phosphoacceptor region; KEGG: sth:STH650 two-component system sensor kinase; GAF sensor signal transduction histidine kinase 2635266..2636441 Rubrobacter xylanophilus DSM 9941 4114693 YP_645342.1 CDS Rxyl_2613 NC_008148.1 2636441 2637064 D PFAM: regulatory protein, LuxR response regulator receiver Bacterio-opsin activator, HTH; KEGG: sth:STH3162 two-component response regulator; two component LuxR family transcriptional regulator 2636441..2637064 Rubrobacter xylanophilus DSM 9941 4114694 YP_645343.1 CDS Rxyl_2614 NC_008148.1 2637307 2637699 D KEGG: bcz:BCZK2204 group-specific protein; hypothetical protein 2637307..2637699 Rubrobacter xylanophilus DSM 9941 4114695 YP_645344.1 CDS Rxyl_2615 NC_008148.1 2637713 2638033 D KEGG: sao:SAOUHSC_02936 hypothetical protein; hypothetical protein 2637713..2638033 Rubrobacter xylanophilus DSM 9941 4114696 YP_645345.1 CDS Rxyl_2616 NC_008148.1 2638065 2639216 D PFAM: short-chain dehydrogenase/reductase SDR Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sco:SCO1803 oxidoreductase; short-chain dehydrogenase/reductase SDR 2638065..2639216 Rubrobacter xylanophilus DSM 9941 4114697 YP_645346.1 CDS Rxyl_2617 NC_008148.1 2639213 2640310 D KEGG: sma:SAV6474 putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase; putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase 2639213..2640310 Rubrobacter xylanophilus DSM 9941 4114698 YP_645347.1 CDS Rxyl_2618 NC_008148.1 2640314 2640784 R PFAM: protein of unknown function UPF0074; KEGG: gsu:GSU1639 Rrf2 family protein; BadM/Rrf2 family transcriptional regulator complement(2640314..2640784) Rubrobacter xylanophilus DSM 9941 4114699 YP_645348.1 CDS Rxyl_2619 NC_008148.1 2640844 2641206 D PFAM: Cupin 2, conserved barrel; KEGG: sco:SCO7426 hypothetical protein; cupin 2 barrel domain-containing protein 2640844..2641206 Rubrobacter xylanophilus DSM 9941 4114700 YP_645349.1 CDS Rxyl_2620 NC_008148.1 2641203 2642360 R PFAM: glycosyl transferase, group 1; KEGG: tfu:Tfu_2101 phosphatidyl-myo-inositol alpha-mannosyltransferase; phosphatidylinositol alpha-mannosyltransferase complement(2641203..2642360) Rubrobacter xylanophilus DSM 9941 4114701 YP_645350.1 CDS Rxyl_2621 NC_008148.1 2642357 2642815 R PFAM: protein of unknown function DUF82; KEGG: tko:TK0292 hypothetical protein; hypothetical protein complement(2642357..2642815) Rubrobacter xylanophilus DSM 9941 4114702 YP_645351.1 CDS Rxyl_2622 NC_008148.1 2642820 2643275 R KEGG: tfu:Tfu_1935 deoxyUTP pyrophosphatase subfamily 1; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase (dut); PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(2642820..2643275) Rubrobacter xylanophilus DSM 9941 4115317 YP_645352.1 CDS Rxyl_2623 NC_008148.1 2643310 2643960 R hypothetical protein complement(2643310..2643960) Rubrobacter xylanophilus DSM 9941 4115318 YP_645353.1 CDS Rxyl_2624 NC_008148.1 2643957 2645633 R KEGG: rso:RS00391 hypothetical protein; hypothetical protein complement(2643957..2645633) Rubrobacter xylanophilus DSM 9941 4115319 YP_645354.1 CDS Rxyl_2625 NC_008148.1 2645609 2646538 R KEGG: rno:499168 similar to protein tyrosine phosphatase, receptor type, F (predicted); hypothetical protein complement(2645609..2646538) Rubrobacter xylanophilus DSM 9941 4115320 YP_645355.1 CDS Rxyl_2626 NC_008148.1 2646535 2647758 R PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: mta:Moth_2387 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase complement(2646535..2647758) Rubrobacter xylanophilus DSM 9941 4115321 YP_645356.1 CDS Rxyl_2627 NC_008148.1 2647762 2649039 R PFAM: glycosyl transferase, family 2; KEGG: lxx:Lxx14000 N-acetyl-glucosamine transferase; glycosyl transferase family protein complement(2647762..2649039) Rubrobacter xylanophilus DSM 9941 4115322 YP_645357.1 CDS Rxyl_2628 NC_008148.1 2649177 2649908 R hypothetical protein complement(2649177..2649908) Rubrobacter xylanophilus DSM 9941 4115323 YP_645358.1 CDS Rxyl_2629 NC_008148.1 2649943 2650641 R PFAM: regulatory protein, LuxR response regulator receiver Bacterio-opsin activator, HTH; KEGG: pfl:PFL_3823 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator complement(2649943..2650641) Rubrobacter xylanophilus DSM 9941 4115324 YP_645359.1 CDS Rxyl_2630 NC_008148.1 2650716 2652449 D TIGRFAM: methionyl-tRNA synthetase; KEGG: pho:PH0993 methionyl-tRNA synthetase; methionyl-tRNA synthetase 2650716..2652449 Rubrobacter xylanophilus DSM 9941 4115325 YP_645360.1 CDS Rxyl_2631 NC_008148.1 2652453 2653511 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: major facilitator superfamily MFS_1; KEGG: rru:Rru_A1180 major facilitator superfamily MFS_1; twin-arginine translocation pathway signal protein complement(2652453..2653511) Rubrobacter xylanophilus DSM 9941 4115326 YP_645361.1 CDS Rxyl_2632 NC_008148.1 2653600 2653959 R PFAM: Rhodanese-like; KEGG: gvi:gll0038 hypothetical protein; rhodanese-like protein complement(2653600..2653959) Rubrobacter xylanophilus DSM 9941 4115327 YP_645362.1 CDS Rxyl_2633 NC_008148.1 2654043 2654831 R PFAM: thymidylate synthase complementing protein ThyX; KEGG: mle:ML1514 putative mycobacteriophage protein; thymidylate synthase (FAD) complement(2654043..2654831) Rubrobacter xylanophilus DSM 9941 4115328 YP_645363.1 CDS Rxyl_2634 NC_008148.1 2655034 2655882 R PFAM: sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 sigma-70 region 1.2; KEGG: mta:Moth_0624 sigma 38 (RpoS); RNA polymerase sigma-28 subunit complement(2655034..2655882) Rubrobacter xylanophilus DSM 9941 4115329 YP_645364.1 CDS Rxyl_2635 NC_008148.1 2655911 2656198 R hypothetical protein complement(2655911..2656198) Rubrobacter xylanophilus DSM 9941 4115330 YP_645365.1 CDS Rxyl_2636 NC_008148.1 2656359 2656568 R hypothetical protein complement(2656359..2656568) Rubrobacter xylanophilus DSM 9941 4115331 YP_645366.1 CDS Rxyl_2637 NC_008148.1 2656568 2657155 R hypothetical protein complement(2656568..2657155) Rubrobacter xylanophilus DSM 9941 4115332 YP_645367.1 CDS Rxyl_2638 NC_008148.1 2657236 2657823 R hypothetical protein complement(2657236..2657823) Rubrobacter xylanophilus DSM 9941 4115333 YP_645368.1 CDS Rxyl_2639 NC_008148.1 2657889 2658800 R hypothetical protein complement(2657889..2658800) Rubrobacter xylanophilus DSM 9941 4115334 YP_645369.1 CDS Rxyl_2640 NC_008148.1 2658841 2659395 R PFAM: GCN5-related N-acetyltransferase; KEGG: tth:TTC1210 hypothetical protein; N-acetyltransferase GCN5 complement(2658841..2659395) Rubrobacter xylanophilus DSM 9941 4115335 YP_645370.1 CDS Rxyl_2641 NC_008148.1 2659485 2660810 D KEGG: cte:CT1906 hypothetical protein; metal dependent phosphohydrolase 2659485..2660810 Rubrobacter xylanophilus DSM 9941 4115102 YP_645371.1 CDS Rxyl_2642 NC_008148.1 2661153 2661593 R KEGG: nfa:nfa32370 hypothetical protein; hypothetical protein complement(2661153..2661593) Rubrobacter xylanophilus DSM 9941 4115103 YP_645372.1 CDS Rxyl_2643 NC_008148.1 2661639 2662106 R PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: sma:SAV7460 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like protein complement(2661639..2662106) Rubrobacter xylanophilus DSM 9941 4115104 YP_645373.1 CDS Rxyl_2644 NC_008148.1 2662103 2662513 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sco:SCO4436 lyase; glyoxalase/bleomycin resistance protein/dioxygenase complement(2662103..2662513) Rubrobacter xylanophilus DSM 9941 4115105 YP_645374.1 CDS Rxyl_2645 NC_008148.1 2662544 2663014 R PFAM: helix-turn-helix, AraC type; KEGG: nfa:nfa43930 putative transcriptional regulator; AraC family transcriptional regulator complement(2662544..2663014) Rubrobacter xylanophilus DSM 9941 4115106 YP_645375.1 CDS Rxyl_2646 NC_008148.1 2663084 2663896 R PFAM: putative cyclase; KEGG: bld:BLi00591 hypothetical protein; putative cyclase complement(2663084..2663896) Rubrobacter xylanophilus DSM 9941 4115107 YP_645376.1 CDS Rxyl_2647 NC_008148.1 2663996 2664643 D PFAM: protein of unknown function UPF0126; KEGG: nmu:Nmul_A0854 protein of unknown function UPF0126; hypothetical protein 2663996..2664643 Rubrobacter xylanophilus DSM 9941 4115108 YP_645377.1 CDS Rxyl_2648 NC_008148.1 2665029 2665985 D PFAM: ABC transporter related; SMART: ATPase; KEGG: rpb:RPB_2019 ABC transporter related; ABC transporter-like protein 2665029..2665985 Rubrobacter xylanophilus DSM 9941 4115109 YP_645378.1 CDS Rxyl_2649 NC_008148.1 2665982 2666743 D PFAM: ABC-2 type transporter; KEGG: eba:ebA6231 ABC transporter permease protein; ABC transporter 2665982..2666743 Rubrobacter xylanophilus DSM 9941 4115110 YP_645379.1 CDS Rxyl_2650 NC_008148.1 2666882 2667742 D TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: mta:Moth_1824 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 2666882..2667742 Rubrobacter xylanophilus DSM 9941 4115111 YP_645380.1 CDS Rxyl_2651 NC_008148.1 2667739 2668578 D TIGRFAM: NifC-like ABC-type porter Molybdate ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mta:Moth_1823 NifC-like ABC-type porter; NifC-like ABC-type porter 2667739..2668578 Rubrobacter xylanophilus DSM 9941 4115112 YP_645381.1 CDS Rxyl_2652 NC_008148.1 2668646 2668870 D KEGG: noc:Noc_1432 hypothetical protein; hypothetical protein 2668646..2668870 Rubrobacter xylanophilus DSM 9941 4115113 YP_645382.1 CDS Rxyl_2653 NC_008148.1 2668875 2669399 R PFAM: Cupin 2, conserved barrel; KEGG: rpb:RPB_1284 hypothetical protein; cupin 2 barrel domain-containing protein complement(2668875..2669399) Rubrobacter xylanophilus DSM 9941 4115114 YP_645383.1 CDS Rxyl_2654 NC_008148.1 2669471 2669710 D hypothetical protein 2669471..2669710 Rubrobacter xylanophilus DSM 9941 4115115 YP_645384.1 CDS Rxyl_2655 NC_008148.1 2669790 2670074 R hypothetical protein complement(2669790..2670074) Rubrobacter xylanophilus DSM 9941 4115116 YP_645385.1 CDS Rxyl_2656 NC_008148.1 2670388 2670780 D PFAM: protein of unknown function DUF59; KEGG: mba:Mbar_A2963 hypothetical protein; hypothetical protein 2670388..2670780 Rubrobacter xylanophilus DSM 9941 4115117 YP_645386.1 CDS Rxyl_2657 NC_008148.1 2670777 2671778 D PFAM: amidohydrolase 2; KEGG: bja:blr3681 hypothetical protein; amidohydrolase 2 2670777..2671778 Rubrobacter xylanophilus DSM 9941 4115118 YP_645387.1 CDS Rxyl_2658 NC_008148.1 2671839 2673089 R PFAM: Acetamidase/Formamidase; KEGG: sma:SAV1944 putative acetamidase; formamidase complement(2671839..2673089) Rubrobacter xylanophilus DSM 9941 4115119 YP_645388.1 CDS Rxyl_2659 NC_008148.1 2673176 2673463 D TIGRFAM: Putative regulatory protein, FmdB; KEGG: bbr:BB1403 hypothetical protein; FmdB transcriptional regulator 2673176..2673463 Rubrobacter xylanophilus DSM 9941 4115120 YP_645389.1 CDS Rxyl_2660 NC_008148.1 2673472 2674122 D KEGG: sco:SCO6809 integral membrane transport protein; integral membrane transport protein 2673472..2674122 Rubrobacter xylanophilus DSM 9941 4115121 YP_645390.1 CDS Rxyl_2661 NC_008148.1 2674155 2674655 D KEGG: gme:Gmet_2251 major facilitator superfamily MFS_1; hypothetical protein 2674155..2674655 Rubrobacter xylanophilus DSM 9941 4115142 YP_645391.1 CDS Rxyl_2662 NC_008148.1 2674652 2675833 R PFAM: Acetamidase/Formamidase; KEGG: ape:APE0528 acetamidase; formamidase complement(2674652..2675833) Rubrobacter xylanophilus DSM 9941 4115143 YP_645392.1 CDS Rxyl_2663 NC_008148.1 2675914 2680023 D PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: cyb:CYB_1640 sensory box histidine kinase/response regulator; multi-sensor hybrid histidine kinase 2675914..2680023 Rubrobacter xylanophilus DSM 9941 4115144 YP_645393.1 CDS Rxyl_2664 NC_008148.1 2680016 2680435 R PFAM: ATP-binding region, ATPase-like; KEGG: mag:amb0334 serine phosphatase RsbU; putative anti-sigma regulatory factor complement(2680016..2680435) Rubrobacter xylanophilus DSM 9941 4115145 YP_645394.1 CDS Rxyl_2665 NC_008148.1 2680562 2680978 D TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: ava:Ava_4580 anti-sigma-factor antagonist (STAS) domain protein; anti-sigma-factor antagonist 2680562..2680978 Rubrobacter xylanophilus DSM 9941 4115146 YP_645395.1 CDS Rxyl_2666 NC_008148.1 2680998 2682461 D PFAM: GGDEF GAF; KEGG: tte:TTE2335 diguanylate cyclase/phosphodiesterase domain 1 (GGDEF); diguanylate cyclase 2680998..2682461 Rubrobacter xylanophilus DSM 9941 4115147 YP_645396.1 CDS Rxyl_2667 NC_008148.1 2682458 2683456 D KEGG: pfl:PFL_2976 hypothetical protein; hypothetical protein 2682458..2683456 Rubrobacter xylanophilus DSM 9941 4115148 YP_645397.1 CDS Rxyl_2668 NC_008148.1 2683446 2684954 D PFAM: glycosyl transferase, group 1; KEGG: pfl:PFL_2977 lipopolysaccharide biosynthesis protein-related protein; group 1 glycosyl transferase 2683446..2684954 Rubrobacter xylanophilus DSM 9941 4115149 YP_645398.1 CDS Rxyl_2669 NC_008148.1 2684958 2686331 D KEGG: rso:RSc2270 probable transmembrane protein; putative transmembrane protein 2684958..2686331 Rubrobacter xylanophilus DSM 9941 4115150 YP_645399.1 CDS Rxyl_2670 NC_008148.1 2686335 2688269 D KEGG: dra:DR0708 hypothetical protein; hypothetical protein 2686335..2688269 Rubrobacter xylanophilus DSM 9941 4115151 YP_645400.1 CDS Rxyl_2671 NC_008148.1 2688314 2688673 D TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: plt:Plut_1364 anti-anti-sigma regulatory factor, SpoIIAA; anti-sigma-factor antagonist 2688314..2688673 Rubrobacter xylanophilus DSM 9941 4115152 YP_645401.1 CDS Rxyl_2672 NC_008148.1 2688651 2690138 R KEGG: rso:RS01997 hypothetical signal peptide protein; hypothetical protein complement(2688651..2690138) Rubrobacter xylanophilus DSM 9941 4115153 YP_645402.1 CDS Rxyl_2673 NC_008148.1 2690175 2691344 R PFAM: response regulator receiver Stage II sporulation E; SMART: Protein phosphatase 2C-like; KEGG: mag:amb1116 serine phosphatase RsbU regulator sigma subunit; response regulator receiver modulated serine phosphatase complement(2690175..2691344) Rubrobacter xylanophilus DSM 9941 4115154 YP_645403.1 CDS Rxyl_2674 NC_008148.1 2691458 2692639 D PFAM: aminotransferase, class I and II; KEGG: mta:Moth_1955 aminotransferase, class I and II; aminotransferase 2691458..2692639 Rubrobacter xylanophilus DSM 9941 4115155 YP_645404.1 CDS Rxyl_2675 NC_008148.1 2692646 2692873 R hypothetical protein complement(2692646..2692873) Rubrobacter xylanophilus DSM 9941 4115156 YP_645405.1 CDS Rxyl_2676 NC_008148.1 2692892 2693536 R KEGG: mac:MA4014 DNA-(apurinic or apyrimidinic site) lyase; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif HhH-GPD; SMART: Iron-sulfur cluster loop; DNA-(apurinic or apyrimidinic site) lyase/endonuclease III complement(2692892..2693536) Rubrobacter xylanophilus DSM 9941 4115157 YP_645406.1 CDS Rxyl_2677 NC_008148.1 2693604 2694902 D catalyzes the formation of D-fructose 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate isomerase 2693604..2694902 Rubrobacter xylanophilus DSM 9941 4115158 YP_645407.1 CDS Rxyl_2678 NC_008148.1 2694862 2695779 R KEGG: sso:SSO3110 hypothetical protein; hypothetical protein complement(2694862..2695779) Rubrobacter xylanophilus DSM 9941 4115159 YP_645408.1 CDS Rxyl_2679 NC_008148.1 2695832 2696149 D hypothetical protein 2695832..2696149 Rubrobacter xylanophilus DSM 9941 4115160 YP_645409.1 CDS Rxyl_2680 NC_008148.1 2696185 2696796 D KEGG: mba:Mbar_A0490 hypothetical protein; hypothetical protein 2696185..2696796 Rubrobacter xylanophilus DSM 9941 4115122 YP_645410.1 CDS Rxyl_2681 NC_008148.1 2696992 2697180 R KEGG: ttj:TTHA1581 hypothetical protein; hypothetical protein complement(2696992..2697180) Rubrobacter xylanophilus DSM 9941 4115123 YP_645411.1 CDS Rxyl_2682 NC_008148.1 2697339 2697938 D PFAM: oxidoreductase, molybdopterin binding; KEGG: ret:RHE_CH03435 probable oxidoreductase protein; oxidoreductase protein 2697339..2697938 Rubrobacter xylanophilus DSM 9941 4115124 YP_645412.1 CDS Rxyl_2683 NC_008148.1 2698090 2699016 R KEGG: sme:SMb21237 putative enzyme, C-terminal domain similar to sulfotransferase protein; sulfotransferase-like protein complement(2698090..2699016) Rubrobacter xylanophilus DSM 9941 4115125 YP_645413.1 CDS Rxyl_2684 NC_008148.1 2699003 2700622 R PFAM: polysaccharide biosynthesis protein; KEGG: pab:PAB0783 polysaccharide biosynthesis related protein; polysaccharide biosynthesis protein complement(2699003..2700622) Rubrobacter xylanophilus DSM 9941 4115126 YP_645414.1 CDS Rxyl_2685 NC_008148.1 2700632 2701297 R hypothetical protein complement(2700632..2701297) Rubrobacter xylanophilus DSM 9941 4115127 YP_645415.1 CDS Rxyl_2686 NC_008148.1 2701301 2702773 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: sulfatase; KEGG: dde:Dde_1201 sulfatase, putative; twin-arginine translocation pathway signal protein complement(2701301..2702773) Rubrobacter xylanophilus DSM 9941 4115128 YP_645416.1 CDS Rxyl_2687 NC_008148.1 2702840 2703199 D PFAM: transcriptional regulator PadR-like; KEGG: afu:AF1542 hypothetical protein; PadR family transcriptional regulator 2702840..2703199 Rubrobacter xylanophilus DSM 9941 4115129 YP_645417.1 CDS Rxyl_2688 NC_008148.1 2703183 2704319 D PFAM: Chromate transporter; KEGG: gvi:gll0565 chromate transport protein; chromate transporter 2703183..2704319 Rubrobacter xylanophilus DSM 9941 4115130 YP_645418.1 CDS Rxyl_2689 NC_008148.1 2704385 2705023 D KEGG: ctc:CTC01202 N-acetylmuramoyl-L-alanine amidase-like protein; hypothetical protein 2704385..2705023 Rubrobacter xylanophilus DSM 9941 4115131 YP_645419.1 CDS Rxyl_2690 NC_008148.1 2705017 2706393 R PFAM: sugar transferase; KEGG: fra:Francci3_1577 undecaprenyl-phosphate galactosephosphotransferase; undecaprenyl-phosphate galactosephosphotransferase complement(2705017..2706393) Rubrobacter xylanophilus DSM 9941 4115132 YP_645420.1 CDS Rxyl_2691 NC_008148.1 2706449 2707219 R TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: mca:MCA1437 bacterial sugar transferase/glycosyl transferase, WecB/TagA/CpsF family protein; WecB/TagA/CpsF family glycosyl transferase complement(2706449..2707219) Rubrobacter xylanophilus DSM 9941 4115133 YP_645421.1 CDS Rxyl_2692 NC_008148.1 2707204 2708316 R KEGG: syd:Syncc9605_0169 glycosyltransferase-like; hypothetical protein complement(2707204..2708316) Rubrobacter xylanophilus DSM 9941 4115134 YP_645422.1 CDS Rxyl_2693 NC_008148.1 2708324 2709259 R hypothetical protein complement(2708324..2709259) Rubrobacter xylanophilus DSM 9941 4115135 YP_645423.1 CDS Rxyl_2694 NC_008148.1 2709256 2710863 R PFAM: O-antigen polymerase; KEGG: ade:Adeh_2640 O-antigen polymerase; O-antigen polymerase complement(2709256..2710863) Rubrobacter xylanophilus DSM 9941 4115136 YP_645424.1 CDS Rxyl_2695 NC_008148.1 2710873 2711526 R KEGG: cpe:CPE0462 capsular polysaccharide biosynthesis protein; chromosome partitioning ATPase complement(2710873..2711526) Rubrobacter xylanophilus DSM 9941 4115137 YP_645425.1 CDS Rxyl_2696 NC_008148.1 2711534 2712265 R PFAM: lipopolysaccharide biosynthesis; KEGG: cpe:CPE0491 capsular polysaccharide biosynthsis protein; lipopolysaccharide biosynthesis protein complement(2711534..2712265) Rubrobacter xylanophilus DSM 9941 4115138 YP_645426.1 CDS Rxyl_2697 NC_008148.1 2712252 2713058 R PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: sru:SRU_2700 TPR repeat protein; TPR repeat-containing protein complement(2712252..2713058) Rubrobacter xylanophilus DSM 9941 4115139 YP_645427.1 CDS Rxyl_2698 NC_008148.1 2713179 2713667 R hypothetical protein complement(2713179..2713667) Rubrobacter xylanophilus DSM 9941 4115140 YP_645428.1 CDS Rxyl_2699 NC_008148.1 2713901 2714449 R KEGG: atc:AGR_L_2376 hypothetical protein; hypothetical protein complement(2713901..2714449) Rubrobacter xylanophilus DSM 9941 4115141 YP_645429.1 CDS Rxyl_2700 NC_008148.1 2714618 2715130 R hypothetical protein complement(2714618..2715130) Rubrobacter xylanophilus DSM 9941 4116192 YP_645430.1 CDS Rxyl_2701 NC_008148.1 2715307 2715786 R KEGG: rno:499168 similar to protein tyrosine phosphatase, receptor type, F (predicted); hypothetical protein complement(2715307..2715786) Rubrobacter xylanophilus DSM 9941 4116193 YP_645431.1 CDS Rxyl_2702 NC_008148.1 2715917 2716315 R hypothetical protein complement(2715917..2716315) Rubrobacter xylanophilus DSM 9941 4116194 YP_645432.1 CDS Rxyl_2703 NC_008148.1 2716339 2716638 R hypothetical protein complement(2716339..2716638) Rubrobacter xylanophilus DSM 9941 4116195 YP_645433.1 CDS Rxyl_2705 NC_008148.1 2718120 2719391 R PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: nfa:nfa11030 putative monooxygenase; monooxygenase complement(2718120..2719391) Rubrobacter xylanophilus DSM 9941 4116196 YP_645434.1 CDS Rxyl_2706 NC_008148.1 2719406 2719897 R TIGRFAM: conserved hypothetical protein; KEGG: nfa:nfa14290 hypothetical protein; hypothetical protein complement(2719406..2719897) Rubrobacter xylanophilus DSM 9941 4116197 YP_645435.1 CDS Rxyl_2708 NC_008148.1 2720619 2721248 R PFAM: transcriptional regulator PadR-like; KEGG: sma:SAV6710 putative ankyrin-like protein; PadR family transcriptional regulator complement(2720619..2721248) Rubrobacter xylanophilus DSM 9941 4116198 YP_645436.1 CDS Rxyl_2709 NC_008148.1 2721458 2722783 R KEGG: tvo:TVN0083 cytochrome bd-I oxidase subunit I; cytochrome bd-type quinol oxidase subunit 1-like protein complement(2721458..2722783) Rubrobacter xylanophilus DSM 9941 4116199 YP_645437.1 CDS Rxyl_2710 NC_008148.1 2722797 2723279 R KEGG: bha:BH1674 menaquinol-cytochrome c reductase (cytochrome b/c subunit); hypothetical protein complement(2722797..2723279) Rubrobacter xylanophilus DSM 9941 4116200 YP_645438.1 CDS Rxyl_2711 NC_008148.1 2723283 2724032 R PFAM: cytochrome b/b6-like; KEGG: bha:BH1673 menaquinol-cytochrome c reductase (cytochrome b subunit); cytochrome b/b6-like protein complement(2723283..2724032) Rubrobacter xylanophilus DSM 9941 4116201 YP_645439.1 CDS Rxyl_2712 NC_008148.1 2724022 2724642 R PFAM: Rieske [2Fe-2S] region; KEGG: gme:Gmet_1922 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein complement(2724022..2724642) Rubrobacter xylanophilus DSM 9941 4116202 YP_645440.1 CDS Rxyl_2713 NC_008148.1 2724646 2725959 R hypothetical protein complement(2724646..2725959) Rubrobacter xylanophilus DSM 9941 4116203 YP_645441.1 CDS Rxyl_2714 NC_008148.1 2725956 2726576 R hypothetical protein complement(2725956..2726576) Rubrobacter xylanophilus DSM 9941 4116204 YP_645442.1 CDS Rxyl_2715 NC_008148.1 2726847 2728322 D PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: sco:SCO2889 sugar transport protein; major facilitator transporter 2726847..2728322 Rubrobacter xylanophilus DSM 9941 4116205 YP_645443.1 CDS Rxyl_2716 NC_008148.1 2728335 2728841 D PFAM: UspA; KEGG: sth:STH924 universal stress protein; hypothetical protein 2728335..2728841 Rubrobacter xylanophilus DSM 9941 4116206 YP_645444.1 CDS Rxyl_2717 NC_008148.1 2728838 2729218 D PFAM: protein of unknown function DUF1362; KEGG: ana:alr3166 hypothetical protein; hypothetical protein 2728838..2729218 Rubrobacter xylanophilus DSM 9941 4116207 YP_645445.1 CDS Rxyl_2718 NC_008148.1 2729257 2731041 D catalyzes the formation of acetate from pyruvate; thiamine pyrophosphate protein 2729257..2731041 Rubrobacter xylanophilus DSM 9941 4116208 YP_645446.1 CDS Rxyl_2719 NC_008148.1 2731038 2732126 D PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sco:SCO7415 racemase; mandelate racemase/muconate lactonizing-like protein 2731038..2732126 Rubrobacter xylanophilus DSM 9941 4116209 YP_645447.1 CDS Rxyl_2720 NC_008148.1 2732164 2735238 D PFAM: protein of unknown function DUF224, cysteine-rich region FAD linked oxidase-like; KEGG: noc:Noc_0464 hypothetical protein; FAD linked oxidase-like protein 2732164..2735238 Rubrobacter xylanophilus DSM 9941 4116210 YP_645448.1 CDS Rxyl_2721 NC_008148.1 2735240 2735692 D PFAM: protein of unknown function DUF296; KEGG: atu:Atu4141 hypothetical protein; hypothetical protein 2735240..2735692 Rubrobacter xylanophilus DSM 9941 4114820 YP_645449.1 CDS Rxyl_2722 NC_008148.1 2735806 2736483 D similar to E.coli; KEGG: pmu:PM1452 hypothetical E.coli; hypothetical protein 2735806..2736483 Rubrobacter xylanophilus DSM 9941 4114821 YP_645450.1 CDS Rxyl_2723 NC_008148.1 2736634 2737203 D PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: mpa:MAP0367 formate dehydrogenase alpha subunit; molybdopterin oxidoreductase Fe4S4 region 2736634..2737203 Rubrobacter xylanophilus DSM 9941 4114822 YP_645451.1 CDS Rxyl_2724 NC_008148.1 2737300 2739843 D PFAM: molydopterin dinucleotide-binding region; KEGG: ade:Adeh_0824 formate dehydrogenase; formate dehydrogenase 2737300..2739843 Rubrobacter xylanophilus DSM 9941 4114823 YP_645452.1 CDS Rxyl_2725 NC_008148.1 2739840 2740778 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: ade:Adeh_0823 4Fe-4S ferredoxin, iron-sulfur binding protein; formate dehydrogenase subunit beta 2739840..2740778 Rubrobacter xylanophilus DSM 9941 4114824 YP_645453.1 CDS Rxyl_2726 NC_008148.1 2740775 2741731 D PFAM: Polysulphide reductase, NrfD; KEGG: ade:Adeh_0822 polysulphide reductase, NrfD; polysulfide reductase, NrfD 2740775..2741731 Rubrobacter xylanophilus DSM 9941 4114825 YP_645454.1 CDS Rxyl_2727 NC_008148.1 2741721 2742173 D hypothetical protein 2741721..2742173 Rubrobacter xylanophilus DSM 9941 4114826 YP_645455.1 CDS Rxyl_2728 NC_008148.1 2742170 2742634 D KEGG: mpa:MAP2360c hypothetical protein; hypothetical protein 2742170..2742634 Rubrobacter xylanophilus DSM 9941 4114827 YP_645456.1 CDS Rxyl_2729 NC_008148.1 2742627 2743649 D KEGG: mpa:MAP3258 hypothetical protein; hypothetical protein 2742627..2743649 Rubrobacter xylanophilus DSM 9941 4114828 YP_645457.1 CDS Rxyl_2730 NC_008148.1 2743669 2745156 D PFAM: oxidoreductase, molybdopterin binding; KEGG: mpa:MAP2359c hypothetical protein; oxidoreductase protein 2743669..2745156 Rubrobacter xylanophilus DSM 9941 4114829 YP_645458.1 CDS Rxyl_2731 NC_008148.1 2745161 2745430 D KEGG: mpa:MAP2358c hypothetical protein; hypothetical protein 2745161..2745430 Rubrobacter xylanophilus DSM 9941 4114830 YP_645459.1 CDS Rxyl_2732 NC_008148.1 2745427 2745735 D hypothetical protein 2745427..2745735 Rubrobacter xylanophilus DSM 9941 4114831 YP_645460.1 CDS Rxyl_2733 NC_008148.1 2745732 2746280 D KEGG: hma:rrnAC2456 hypothetical protein; hypothetical protein 2745732..2746280 Rubrobacter xylanophilus DSM 9941 4114832 YP_645461.1 CDS Rxyl_2734 NC_008148.1 2746283 2747449 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bmb:BruAb2_0161 CAIB/BAIF family protein; L-carnitine dehydratase/bile acid-inducible protein F complement(2746283..2747449) Rubrobacter xylanophilus DSM 9941 4114833 YP_645462.1 CDS Rxyl_2735 NC_008148.1 2747451 2748596 R PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: reu:Reut_B3542 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; acyl-CoA dehydrogenase-like protein complement(2747451..2748596) Rubrobacter xylanophilus DSM 9941 4114834 YP_645463.1 CDS Rxyl_2736 NC_008148.1 2748593 2749975 R PFAM: MmgE/PrpD; KEGG: pae:PA0881 hypothetical protein; MmgE/PrpD complement(2748593..2749975) Rubrobacter xylanophilus DSM 9941 4114835 YP_645464.1 CDS Rxyl_2737 NC_008148.1 2749972 2750478 R PFAM: MaoC-like dehydratase; KEGG: msy:MS53_0536 putative transcription regulatory protein; MaoC-like dehydratase complement(2749972..2750478) Rubrobacter xylanophilus DSM 9941 4114836 YP_645465.1 CDS Rxyl_2738 NC_008148.1 2750560 2751279 R PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: rso:RSc1997 probable transcription regulator protein; GntR family transcriptional regulator complement(2750560..2751279) Rubrobacter xylanophilus DSM 9941 4114837 YP_645466.1 CDS Rxyl_2739 NC_008148.1 2751551 2752930 D PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: psb:Psyr_3936 general substrate transporter:major facilitator superfamily; major facilitator transporter 2751551..2752930 Rubrobacter xylanophilus DSM 9941 4114838 YP_645467.1 CDS Rxyl_2740 NC_008148.1 2752957 2753688 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfl:PFL_1365 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 2752957..2753688 Rubrobacter xylanophilus DSM 9941 4114839 YP_645468.1 CDS Rxyl_2741 NC_008148.1 2753685 2754674 R PFAM: Asparaginase/glutaminase; KEGG: bms:BR1962 asparaginase family protein; asparaginase complement(2753685..2754674) Rubrobacter xylanophilus DSM 9941 4115259 YP_645469.1 CDS Rxyl_2742 NC_008148.1 2754821 2755780 D PFAM: polysaccharide deacetylase; KEGG: psp:PSPPH_3934 polysaccharide deacetylase family protein; polysaccharide deacetylase 2754821..2755780 Rubrobacter xylanophilus DSM 9941 4115260 YP_645470.1 CDS Rxyl_2743 NC_008148.1 2755793 2756140 D KEGG: hpy:HP0311 hypothetical protein; hypothetical protein 2755793..2756140 Rubrobacter xylanophilus DSM 9941 4115261 YP_645471.1 CDS Rxyl_2744 NC_008148.1 2756144 2757130 D PFAM: cobalamin synthesis protein, P47K cobalamin synthesis CobW-like; KEGG: mag:amb2306 putative GTPase; cobalamin synthesis protein, P47K 2756144..2757130 Rubrobacter xylanophilus DSM 9941 4115262 YP_645472.1 CDS Rxyl_2745 NC_008148.1 2757144 2758397 D KEGG: ret:RHE_CH00350 probable N-carbamoyl-L-amino acid amidohydrolase protein; TIGRFAM: Amidase, hydantoinase/carbamoylase; PFAM: peptidase M20 peptidase dimerisation; hydantoinase/carbamoylase 2757144..2758397 Rubrobacter xylanophilus DSM 9941 4115263 YP_645473.1 CDS Rxyl_2746 NC_008148.1 2758436 2759863 D catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase 2758436..2759863 Rubrobacter xylanophilus DSM 9941 4115264 YP_645474.1 CDS Rxyl_2747 NC_008148.1 2759869 2760519 D PFAM: isochorismatase hydrolase; KEGG: nph:NP6214A homolog 1 to N-carbamoylsarcosine amidase; N-carbamoylsarcosine amidase 2759869..2760519 Rubrobacter xylanophilus DSM 9941 4115265 YP_645475.1 CDS Rxyl_2748 NC_008148.1 2760555 2761397 D Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 2760555..2761397 Rubrobacter xylanophilus DSM 9941 4115266 YP_645476.1 CDS Rxyl_2749 NC_008148.1 2761394 2761960 D TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region; PFAM: Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: sth:STH2535 fumarate hydratase subunit B; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta 2761394..2761960 Rubrobacter xylanophilus DSM 9941 4115267 YP_645477.1 CDS Rxyl_2750 NC_008148.1 2761966 2763000 R PFAM: protein of unknown function UPF0118; KEGG: xcb:XC_0080 hypothetical protein; hypothetical protein complement(2761966..2763000) Rubrobacter xylanophilus DSM 9941 4115268 YP_645478.1 CDS Rxyl_2751 NC_008148.1 2763133 2764170 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sco:SCO7413 short chain dehydrogenase; short chain dehydrogenase 2763133..2764170 Rubrobacter xylanophilus DSM 9941 4115269 YP_645479.1 CDS Rxyl_2752 NC_008148.1 2764167 2764700 D PFAM: Vitamin K epoxide reductase; KEGG: eba:ebA4552 hypothetical protein; vitamin K epoxide reductase 2764167..2764700 Rubrobacter xylanophilus DSM 9941 4115270 YP_645480.1 CDS Rxyl_2753 NC_008148.1 2764704 2765063 D KEGG: sme:SMb20012 hypothetical protein; hypothetical protein 2764704..2765063 Rubrobacter xylanophilus DSM 9941 4115271 YP_645481.1 CDS Rxyl_2754 NC_008148.1 2765065 2766888 D PFAM: glycoside hydrolase 15-related; KEGG: noc:Noc_2053 glycoside hydrolase 15-related; glycoside hydrolase 15-like protein 2765065..2766888 Rubrobacter xylanophilus DSM 9941 4115272 YP_645482.1 CDS Rxyl_2755 NC_008148.1 2767077 2767976 D PFAM: Polyprenyl synthetase; KEGG: cya:CYA_0377 geranylgeranyl diphosphate synthase; farnesyl-diphosphate synthase 2767077..2767976 Rubrobacter xylanophilus DSM 9941 4115273 YP_645483.1 CDS Rxyl_2756 NC_008148.1 2767999 2769663 D PFAM: Prenyltransferase/squalene oxidase; KEGG: rba:RB5934 probable squalene-hopene cyclase; prenyltransferase/squalene oxidase 2767999..2769663 Rubrobacter xylanophilus DSM 9941 4115274 YP_645484.1 CDS Rxyl_2757 NC_008148.1 2769660 2770634 D PFAM: UbiA prenyltransferase; KEGG: pab:PAB0018 4-hydroxybenzoate octaprenyltransferase, putative; UbiA prenyltransferase 2769660..2770634 Rubrobacter xylanophilus DSM 9941 4115275 YP_645485.1 CDS Rxyl_2758 NC_008148.1 2770844 2771749 D KEGG: pae:PA4313 hypothetical protein; hypothetical protein 2770844..2771749 Rubrobacter xylanophilus DSM 9941 4115276 YP_645486.1 CDS Rxyl_2759 NC_008148.1 2771814 2772419 R TIGRFAM: Alkylhydroperoxidase AhpD core Uncharacterised peroxidase-related; PFAM: Carboxymuconolactone decarboxylase; KEGG: rsp:RSP_3419 hypothetical protein; hypothetical protein complement(2771814..2772419) Rubrobacter xylanophilus DSM 9941 4115277 YP_645487.1 CDS Rxyl_2760 NC_008148.1 2772440 2773423 R PFAM: aldo/keto reductase; KEGG: ade:Adeh_3036 aldo/keto reductase; aldo/keto reductase complement(2772440..2773423) Rubrobacter xylanophilus DSM 9941 4117302 YP_645488.1 CDS Rxyl_2761 NC_008148.1 2773628 2774167 D KEGG: mba:Mbar_A0937 hypothetical protein; hypothetical protein 2773628..2774167 Rubrobacter xylanophilus DSM 9941 4117303 YP_645489.1 CDS Rxyl_2763 NC_008148.1 2774586 2776319 R KEGG: deh:cbdb_A1049 glutamine-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase NAD+ synthase; NH(3)-dependent NAD(+) synthetase complement(2774586..2776319) Rubrobacter xylanophilus DSM 9941 4117304 YP_645490.1 CDS Rxyl_2764 NC_008148.1 2776387 2776818 D hypothetical protein 2776387..2776818 Rubrobacter xylanophilus DSM 9941 4117305 YP_645491.1 CDS Rxyl_2765 NC_008148.1 2776815 2777444 R PFAM: NUDIX hydrolase; KEGG: cac:CAC0446 hydrolase of MutT (Nudix) family; NUDIX hydrolase complement(2776815..2777444) Rubrobacter xylanophilus DSM 9941 4117306 YP_645492.1 CDS Rxyl_2766 NC_008148.1 2777545 2778576 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: sil:SPO1700 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase 2777545..2778576 Rubrobacter xylanophilus DSM 9941 4117307 YP_645493.1 CDS Rxyl_2767 NC_008148.1 2778758 2780062 D PFAM: CBS protein of unknown function DUF21 transporter-associated region; KEGG: hma:rrnAC1898 hypothetical protein; hypothetical protein 2778758..2780062 Rubrobacter xylanophilus DSM 9941 4117308 YP_645494.1 CDS Rxyl_2768 NC_008148.1 2780067 2780378 R KEGG: dra:DR2097 hypothetical protein; hypothetical protein complement(2780067..2780378) Rubrobacter xylanophilus DSM 9941 4117309 YP_645495.1 CDS Rxyl_2769 NC_008148.1 2780395 2782251 R PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; KEGG: gvi:glr1067 HlyB/MsbA family ABC transporter; ABC transporter-like protein complement(2780395..2782251) Rubrobacter xylanophilus DSM 9941 4117310 YP_645496.1 CDS Rxyl_2770 NC_008148.1 2782268 2782660 D KEGG: ade:Adeh_0512 hypothetical protein; response regulator receiver protein 2782268..2782660 Rubrobacter xylanophilus DSM 9941 4117311 YP_645497.1 CDS Rxyl_2771 NC_008148.1 2782650 2783228 D PFAM: NUDIX hydrolase; KEGG: cte:CT1365 NUDIX/MutT family protein, putative; NUDIX hydrolase 2782650..2783228 Rubrobacter xylanophilus DSM 9941 4117312 YP_645498.1 CDS Rxyl_2772 NC_008148.1 2783270 2783695 R PFAM: HesB/YadR/YfhF; KEGG: aae:aq_1857 hypothetical protein; HesB/YadR/YfhF complement(2783270..2783695) Rubrobacter xylanophilus DSM 9941 4117313 YP_645499.1 CDS Rxyl_2773 NC_008148.1 2783692 2785941 R PFAM: transglutaminase-like; KEGG: hma:rrnAC3056 hypothetical protein; transglutaminase complement(2783692..2785941) Rubrobacter xylanophilus DSM 9941 4117314 YP_645500.1 CDS Rxyl_2774 NC_008148.1 2785938 2787173 R PFAM: protein of unknown function DUF58; KEGG: sma:SAV6111 putative membrane protein; hypothetical protein complement(2785938..2787173) Rubrobacter xylanophilus DSM 9941 4117315 YP_645501.1 CDS Rxyl_2775 NC_008148.1 2787173 2788132 R PFAM: ATPase associated with various cellular activities, AAA_3 ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: sth:STH2553 methanol dehydrogenase regulatory protein; ATPase complement(2787173..2788132) Rubrobacter xylanophilus DSM 9941 4117316 YP_645502.1 CDS Rxyl_2776 NC_008148.1 2788230 2788769 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: syf:Synpcc7942_2202 HNH nuclease; HNH endonuclease complement(2788230..2788769) Rubrobacter xylanophilus DSM 9941 4117317 YP_645503.1 CDS Rxyl_2777 NC_008148.1 2788851 2789318 R hypothetical protein complement(2788851..2789318) Rubrobacter xylanophilus DSM 9941 4117318 YP_645504.1 CDS Rxyl_2778 NC_008148.1 2789366 2789872 R PFAM: Ferritin and Dps; KEGG: sth:STH544 ferritin; Ferritin and Dps complement(2789366..2789872) Rubrobacter xylanophilus DSM 9941 4117319 YP_645505.1 CDS Rxyl_2779 NC_008148.1 2789934 2790980 R PFAM: protein of unknown function DUF1611; KEGG: cyb:CYB_2146 hypothetical protein; hypothetical protein complement(2789934..2790980) Rubrobacter xylanophilus DSM 9941 4117320 YP_645506.1 CDS Rxyl_2780 NC_008148.1 2790980 2791999 R PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: nph:NP2480A mandelate racemase homolog / muconate lactonizing enzyme homolog; mandelate racemase/muconate lactonizing-like protein complement(2790980..2791999) Rubrobacter xylanophilus DSM 9941 4117321 YP_645507.1 CDS Rxyl_2781 NC_008148.1 2792136 2792861 D PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: tfu:Tfu_2910 response regulator receiver; two component transcriptional regulator 2792136..2792861 Rubrobacter xylanophilus DSM 9941 4117614 YP_645508.1 CDS Rxyl_2782 NC_008148.1 2792864 2793637 D PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: mta:Moth_2494 multi-sensor signal transduction histidine kinase; histidine kinase 2792864..2793637 Rubrobacter xylanophilus DSM 9941 4117615 YP_645509.1 CDS Rxyl_2783 NC_008148.1 2793594 2796899 R KEGG: syn:slr0359 hypothetical protein; TIGRFAM: GGDEF domain; PFAM: GGDEF EAL GAF PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(2793594..2796899) Rubrobacter xylanophilus DSM 9941 4117616 YP_645510.1 CDS Rxyl_2784 NC_008148.1 2797124 2797795 D PFAM: TENA/THI-4 protein; KEGG: sto:ST1007 hypothetical transcriptional activator; TenA family transcription regulator 2797124..2797795 Rubrobacter xylanophilus DSM 9941 4117617 YP_645511.1 CDS Rxyl_2785 NC_008148.1 2797805 2798011 R PFAM: ChaB; KEGG: rfe:RF_1086 cation transport regulator ChaB; ChaB protein complement(2797805..2798011) Rubrobacter xylanophilus DSM 9941 4117618 YP_645512.1 CDS Rxyl_2786 NC_008148.1 2798076 2799020 R KEGG: tfu:Tfu_0643 thiamine monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein-like; thiamine-monophosphate kinase complement(2798076..2799020) Rubrobacter xylanophilus DSM 9941 4117619 YP_645513.1 CDS Rxyl_2787 NC_008148.1 2799017 2799898 R PFAM: NUDIX hydrolase; KEGG: dra:DR0329 MutT/NUDIX family protein; NUDIX hydrolase complement(2799017..2799898) Rubrobacter xylanophilus DSM 9941 4117620 YP_645514.1 CDS Rxyl_2788 NC_008148.1 2799895 2800521 R KEGG: gvi:gll0403 probable thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase complement(2799895..2800521) Rubrobacter xylanophilus DSM 9941 4117621 YP_645515.1 CDS Rxyl_2789 NC_008148.1 2800549 2801058 R TIGRFAM: ThiW; KEGG: pai:PAE2529 hypothetical protein; ThiW complement(2800549..2801058) Rubrobacter xylanophilus DSM 9941 4117622 YP_645516.1 CDS Rxyl_2790 NC_008148.1 2801042 2801845 R PFAM: hydroxyethylthiazole kinase; KEGG: mhu:Mhun_2217 hydroxyethylthiazole kinase; hydroxyethylthiazole kinase complement(2801042..2801845) Rubrobacter xylanophilus DSM 9941 4117623 YP_645517.1 CDS Rxyl_2791 NC_008148.1 2801842 2802636 R KEGG: mta:Moth_0867 phosphomethylpyrimidine kinase; TIGRFAM: Phosphomethylpyrimidine kinase type-2; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase type-2 complement(2801842..2802636) Rubrobacter xylanophilus DSM 9941 4117624 YP_645518.1 CDS Rxyl_2792 NC_008148.1 2802633 2803274 R PFAM: TENA/THI-4 protein; KEGG: pfu:PF1337 transcriptional activator, putative; TenA family transcription regulator complement(2802633..2803274) Rubrobacter xylanophilus DSM 9941 4117625 YP_645519.1 CDS Rxyl_2794 NC_008148.1 2803986 2804531 R PFAM: NUDIX hydrolase; KEGG: mta:Moth_1504 NUDIX hydrolase; NUDIX hydrolase complement(2803986..2804531) Rubrobacter xylanophilus DSM 9941 4117626 YP_645520.1 CDS Rxyl_2795 NC_008148.1 2804605 2804844 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: ttj:TTHA0177 ferredoxin; 4Fe-4S ferredoxin complement(2804605..2804844) Rubrobacter xylanophilus DSM 9941 4117627 YP_645521.1 CDS Rxyl_2796 NC_008148.1 2805002 2805754 R PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: tfu:Tfu_0117 cyclic nucleotide-binding:bacterial regulatory protein, Crp; Crp/FNR family transcriptional regulator complement(2805002..2805754) Rubrobacter xylanophilus DSM 9941 4117628 YP_645522.1 CDS Rxyl_2797 NC_008148.1 2805847 2807295 R TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: tte:TTE0749 permeases of the major facilitator superfamily; EmrB/QacA family drug resistance transporter complement(2805847..2807295) Rubrobacter xylanophilus DSM 9941 4117629 YP_645523.1 CDS Rxyl_2798 NC_008148.1 2807418 2808125 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pst:PSPTO1740 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2807418..2808125 Rubrobacter xylanophilus DSM 9941 4117630 YP_645524.1 CDS Rxyl_2799 NC_008148.1 2808138 2808794 R PFAM: peptidase C60, sortase A and B; KEGG: cpe:CPE2315 sortase, putative; peptidase C60, sortase A and B complement(2808138..2808794) Rubrobacter xylanophilus DSM 9941 4117631 YP_645525.1 CDS Rxyl_2800 NC_008148.1 2808824 2810716 R PFAM: amino acid permease-associated region; KEGG: sai:Saci_2189 conserved archaeal membrane protein; amino acid permease-associated protein complement(2808824..2810716) Rubrobacter xylanophilus DSM 9941 4117632 YP_645526.1 CDS Rxyl_2801 NC_008148.1 2810791 2811210 R hypothetical protein complement(2810791..2811210) Rubrobacter xylanophilus DSM 9941 4117633 YP_645527.1 CDS Rxyl_2802 NC_008148.1 2811272 2812144 R PFAM: Rhodanese-like; KEGG: rsp:RSP_0885 thiosulfate sulfurtransferase, rhodanese-like; thiosulfate sulfurtransferase complement(2811272..2812144) Rubrobacter xylanophilus DSM 9941 4117634 YP_645528.1 CDS Rxyl_2803 NC_008148.1 2812141 2813673 R PFAM: Polynucleotide adenylyltransferase region; KEGG: sma:SAV4299 putative RNA nucleotidyltransferase; polynucleotide adenylyltransferase complement(2812141..2813673) Rubrobacter xylanophilus DSM 9941 4117635 YP_645529.1 CDS Rxyl_2804 NC_008148.1 2813691 2814128 R TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: fra:Francci3_4302 anti-sigma-factor antagonist (STAS) domain protein; anti-sigma-factor antagonist complement(2813691..2814128) Rubrobacter xylanophilus DSM 9941 4117636 YP_645530.1 CDS Rxyl_2805 NC_008148.1 2814208 2814777 D PFAM: protein of unknown function DUF88; KEGG: tth:TTC0692 hypothetical protein; hypothetical protein 2814208..2814777 Rubrobacter xylanophilus DSM 9941 4117637 YP_645531.1 CDS Rxyl_2806 NC_008148.1 2814913 2816421 D PFAM: thiamine biosynthesis protein THUMP ExsB PP-loop; KEGG: pai:PAE3421 thiamine biosynthesis protein, probable; thiamine biosynthesis protein 2814913..2816421 Rubrobacter xylanophilus DSM 9941 4117638 YP_645532.1 CDS Rxyl_2807 NC_008148.1 2816418 2817311 R KEGG: stl:stu1539 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase-like UDP-N-acetylenolpyruvoylglucosamine reductase-like; UDP-N-acetylmuramate dehydrogenase complement(2816418..2817311) Rubrobacter xylanophilus DSM 9941 4117639 YP_645533.1 CDS Rxyl_2808 NC_008148.1 2817371 2818411 D PFAM: transferase hexapeptide repeat Nucleotidyl transferase; KEGG: gvi:gll3341 mannose-1-phosphate guanyltransferase / phosphomannomutase; nucleotidyl transferase 2817371..2818411 Rubrobacter xylanophilus DSM 9941 4117640 YP_645534.1 CDS Rxyl_2809 NC_008148.1 2818419 2819078 R PFAM: regulatory protein, LuxR response regulator receiver sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: sth:STH2728 two-component response regulator; two component LuxR family transcriptional regulator complement(2818419..2819078) Rubrobacter xylanophilus DSM 9941 4117641 YP_645535.1 CDS Rxyl_2810 NC_008148.1 2819075 2820580 R PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase, dimerisation and phosphoacceptor region; KEGG: bha:BH1199 two-component sensor histidine kinase; putative signal transduction histidine kinase complement(2819075..2820580) Rubrobacter xylanophilus DSM 9941 4117642 YP_645536.1 CDS Rxyl_2811 NC_008148.1 2820776 2821276 R hypothetical protein complement(2820776..2821276) Rubrobacter xylanophilus DSM 9941 4117643 YP_645537.1 CDS Rxyl_2812 NC_008148.1 2821386 2821925 R KEGG: bld:BLi03431 YmcC; hypothetical protein complement(2821386..2821925) Rubrobacter xylanophilus DSM 9941 4117644 YP_645538.1 CDS Rxyl_2813 NC_008148.1 2822012 2822659 D PFAM: regulatory protein, TetR; KEGG: bsu:BG12647 transcriptional regulator of the polyketide synthase operon; TetR family transcriptional regulator 2822012..2822659 Rubrobacter xylanophilus DSM 9941 4117645 YP_645539.1 CDS Rxyl_2814 NC_008148.1 2822625 2823212 R KEGG: ava:Ava_4395 hypothetical protein; hypothetical protein complement(2822625..2823212) Rubrobacter xylanophilus DSM 9941 4117646 YP_645540.1 CDS Rxyl_2815 NC_008148.1 2823378 2823965 R hypothetical protein complement(2823378..2823965) Rubrobacter xylanophilus DSM 9941 4117647 YP_645541.1 CDS Rxyl_2816 NC_008148.1 2823978 2824424 R KEGG: pha:PSHAa0070 hypothetical protein; hypothetical protein complement(2823978..2824424) Rubrobacter xylanophilus DSM 9941 4117648 YP_645542.1 CDS Rxyl_2818 NC_008148.1 2825256 2825738 D TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8, signal peptidase II; KEGG: sth:STH1242 signal peptidase II; signal peptidase II 2825256..2825738 Rubrobacter xylanophilus DSM 9941 4117649 YP_645543.1 CDS Rxyl_2819 NC_008148.1 2825735 2826385 R PFAM: regulatory protein, ArsR; KEGG: sru:SRU_0138 transcriptional regulatory protein, putative; putative transcriptional regulator complement(2825735..2826385) Rubrobacter xylanophilus DSM 9941 4117650 YP_645544.1 CDS Rxyl_2820 NC_008148.1 2826541 2827068 D KEGG: noc:Noc_1447 hypothetical protein; hypothetical protein 2826541..2827068 Rubrobacter xylanophilus DSM 9941 4117651 YP_645545.1 CDS Rxyl_2821 NC_008148.1 2827072 2827380 D PFAM: Rieske [2Fe-2S] region; KEGG: sco:SCO1923 putative dioxygenase ferredoxin subunit; Rieske (2Fe-2S) domain-containing protein 2827072..2827380 Rubrobacter xylanophilus DSM 9941 4117652 YP_645546.1 CDS Rxyl_2822 NC_008148.1 2827380 2828618 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sco:SCO7117 ferredoxin reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2827380..2828618 Rubrobacter xylanophilus DSM 9941 4117673 YP_645547.1 CDS Rxyl_2823 NC_008148.1 2828642 2828962 D hypothetical protein 2828642..2828962 Rubrobacter xylanophilus DSM 9941 4117674 YP_645548.1 CDS Rxyl_2824 NC_008148.1 2829052 2831034 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(2829052..2831034) Rubrobacter xylanophilus DSM 9941 4117675 YP_645549.1 CDS Rxyl_2825 NC_008148.1 2831112 2831846 R KEGG: sco:SCO7819 putative integral membrane protein; putative integral membrane protein complement(2831112..2831846) Rubrobacter xylanophilus DSM 9941 4117676 YP_645550.1 CDS Rxyl_2826 NC_008148.1 2831853 2832401 R KEGG: aba:Acid345_3971 putative secreted protein; putative secreted protein complement(2831853..2832401) Rubrobacter xylanophilus DSM 9941 4117677 YP_645551.1 CDS Rxyl_2827 NC_008148.1 2832758 2833189 R hypothetical protein complement(2832758..2833189) Rubrobacter xylanophilus DSM 9941 4117678 YP_645552.1 CDS Rxyl_2828 NC_008148.1 2833193 2833801 R PFAM: thymidine kinase; KEGG: bsu:BG10419 thymidine kinase; thymidine kinase complement(2833193..2833801) Rubrobacter xylanophilus DSM 9941 4117679 YP_645553.1 CDS Rxyl_2829 NC_008148.1 2833818 2834576 R KEGG: wsu:WS0200 hypothetical protein; hypothetical protein complement(2833818..2834576) Rubrobacter xylanophilus DSM 9941 4117680 YP_645554.1 CDS Rxyl_2830 NC_008148.1 2834614 2835528 R PFAM: HpcH/HpaI aldolase; KEGG: sil:SPO1565 citrate lyase, putative; Citryl-CoA lyase complement(2834614..2835528) Rubrobacter xylanophilus DSM 9941 4117681 YP_645555.1 CDS Rxyl_2831 NC_008148.1 2835525 2836949 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding protein of unknown function DUF224, cysteine-rich region; KEGG: ava:Ava_4555 hypothetical protein; hypothetical protein complement(2835525..2836949) Rubrobacter xylanophilus DSM 9941 4117682 YP_645556.1 CDS Rxyl_2832 NC_008148.1 2836996 2838270 R PFAM: FAD linked oxidase-like; KEGG: ade:Adeh_2866 FAD linked oxidase-like; FAD linked oxidase-like protein complement(2836996..2838270) Rubrobacter xylanophilus DSM 9941 4117683 YP_645557.1 CDS Rxyl_2833 NC_008148.1 2838270 2839724 R PFAM: FAD linked oxidase-like; KEGG: ava:Ava_2520 glycolate oxidase subunit GlcD; D-lactate dehydrogenase complement(2838270..2839724) Rubrobacter xylanophilus DSM 9941 4117684 YP_645558.1 CDS Rxyl_2834 NC_008148.1 2839923 2841371 D TIGRFAM: NCS1 nucleoside transporter family; PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: bps:BPSL2120 putative transport-related membrane protein; NCS1 nucleoside transporter 2839923..2841371 Rubrobacter xylanophilus DSM 9941 4117685 YP_645559.1 CDS Rxyl_2835 NC_008148.1 2841463 2841990 D KEGG: chy:CHY_1067 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 2841463..2841990 Rubrobacter xylanophilus DSM 9941 4117686 YP_645560.1 CDS Rxyl_2836 NC_008148.1 2842140 2843009 D PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: sma:SAV2069 putative dehydrogenase; molybdopterin dehydrogenase protein 2842140..2843009 Rubrobacter xylanophilus DSM 9941 4117687 YP_645561.1 CDS Rxyl_2837 NC_008148.1 2843013 2843474 D PFAM: ferredoxin [2Fe-2S]-binding; KEGG: mlo:mll2289 carbon-monoxide dehydrogenase small chain; (2Fe-2S)-binding protein 2843013..2843474 Rubrobacter xylanophilus DSM 9941 4117688 YP_645562.1 CDS Rxyl_2838 NC_008148.1 2843471 2844847 D catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.; hydroxydechloroatrazine ethylaminohydrolase 2843471..2844847 Rubrobacter xylanophilus DSM 9941 4117689 YP_645563.1 CDS Rxyl_2839 NC_008148.1 2844844 2847201 D PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: sco:SCO6172 oxidoreductase; xanthine dehydrogenase, molybdenum binding subunit apoprotein 2844844..2847201 Rubrobacter xylanophilus DSM 9941 4117690 YP_645564.1 CDS Rxyl_2840 NC_008148.1 2847514 2848890 D TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: dra:DRA0176 xanthine permease, putative; uracil-xanthine permease 2847514..2848890 Rubrobacter xylanophilus DSM 9941 4117691 YP_645565.1 CDS Rxyl_2841 NC_008148.1 2848892 2849428 D KEGG: dra:DR1158 hypothetical protein; hypothetical protein 2848892..2849428 Rubrobacter xylanophilus DSM 9941 4115818 YP_645566.1 CDS Rxyl_2842 NC_008148.1 2849462 2850046 D PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: pca:Pcar_0660 cytidine and deoxycytidylate deaminase family protein; CMP/dCMP deaminase 2849462..2850046 Rubrobacter xylanophilus DSM 9941 4115819 YP_645567.1 CDS Rxyl_2843 NC_008148.1 2850063 2850947 D PFAM: Uricase; KEGG: dra:DR1160 uricase; urate oxidase 2850063..2850947 Rubrobacter xylanophilus DSM 9941 4115820 YP_645568.1 CDS Rxyl_2844 NC_008148.1 2850944 2851279 D PFAM: Transthyretin; KEGG: sme:SMb20872 conserved hypothetical protein, transthyretin-like protein; transthyretin 2850944..2851279 Rubrobacter xylanophilus DSM 9941 4115821 YP_645569.1 CDS Rxyl_2845 NC_008148.1 2851280 2852644 D KEGG: dra:DR1153 allantoinase, putative; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase Amidohydrolase 3; dihydroorotase, multifunctional complex type 2851280..2852644 Rubrobacter xylanophilus DSM 9941 4115822 YP_645570.1 CDS Rxyl_2846 NC_008148.1 2852641 2853054 D KEGG: psb:Psyr_2500 hypothetical protein; hypothetical protein 2852641..2853054 Rubrobacter xylanophilus DSM 9941 4115823 YP_645571.1 CDS Rxyl_2847 NC_008148.1 2853074 2854093 D PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: pfu:PF0599 aspartate carbamoyltransferase catalytic chain; aspartate carbamoyltransferase 2853074..2854093 Rubrobacter xylanophilus DSM 9941 4115824 YP_645572.1 CDS Rxyl_2848 NC_008148.1 2854097 2855038 D catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 2854097..2855038 Rubrobacter xylanophilus DSM 9941 4115825 YP_645573.1 CDS Rxyl_2849 NC_008148.1 2855035 2856027 D PFAM: Asparaginase/glutaminase; KEGG: bmb:BruAb1_1936 L-asparaginase type II, hypothetical; asparaginase 2855035..2856027 Rubrobacter xylanophilus DSM 9941 4115826 YP_645574.1 CDS Rxyl_2850 NC_008148.1 2856111 2856893 D PFAM: regulatory proteins, IclR; KEGG: sco:SCO6246 transcriptional regulator for glyoxylate bypass; IclR family transcriptional regulator 2856111..2856893 Rubrobacter xylanophilus DSM 9941 4115827 YP_645575.1 CDS Rxyl_2851 NC_008148.1 2857144 2857956 D PFAM: Xylose isomerase-like TIM barrel; KEGG: bpm:BURPS1710b_2425 hydroxypyruvate isomerase; hydroxypyruvate isomerase 2857144..2857956 Rubrobacter xylanophilus DSM 9941 4115828 YP_645576.1 CDS Rxyl_2852 NC_008148.1 2857973 2858866 D TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: sco:SCO6205 putative dehydrogenase; 2-hydroxy-3-oxopropionate reductase 2857973..2858866 Rubrobacter xylanophilus DSM 9941 4115829 YP_645577.1 CDS Rxyl_2853 NC_008148.1 2858878 2860629 D catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 2858878..2860629 Rubrobacter xylanophilus DSM 9941 4115830 YP_645578.1 CDS Rxyl_2854 NC_008148.1 2860629 2861915 D PFAM: MOFRL; KEGG: dvu:DVU0765 hydroxypyruvate reductase, putative; glycerate 2-kinase 2860629..2861915 Rubrobacter xylanophilus DSM 9941 4115831 YP_645579.1 CDS Rxyl_2855 NC_008148.1 2861912 2862283 D KEGG: gvi:glr0668 hypothetical protein; cell wall biosynthesis glycosyltransferase-like protein 2861912..2862283 Rubrobacter xylanophilus DSM 9941 4115832 YP_645580.1 CDS Rxyl_2856 NC_008148.1 2862325 2863815 D TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: mta:Moth_1132 glutamyl-tRNA synthetase; glutamyl-tRNA synthetase 2862325..2863815 Rubrobacter xylanophilus DSM 9941 4115833 YP_645581.1 CDS Rxyl_2857 NC_008148.1 2863969 2864532 R KEGG: cch:Cag_0630 hypothetical protein; hypothetical protein complement(2863969..2864532) Rubrobacter xylanophilus DSM 9941 4115834 YP_645582.1 CDS Rxyl_2858 NC_008148.1 2864552 2865382 D hypothetical protein 2864552..2865382 Rubrobacter xylanophilus DSM 9941 4115835 YP_645583.1 CDS Rxyl_2859 NC_008148.1 2865339 2865929 R KEGG: mma:MM1281 hypothetical protein; hypothetical protein complement(2865339..2865929) Rubrobacter xylanophilus DSM 9941 4115836 YP_645584.1 CDS Rxyl_2860 NC_008148.1 2866023 2866550 D hypothetical protein 2866023..2866550 Rubrobacter xylanophilus DSM 9941 4115837 YP_645585.1 CDS Rxyl_2861 NC_008148.1 2866560 2866802 R PFAM: nitrogen-fixing NifU-like; KEGG: tte:TTE1742 thioredoxin-like proteins and domains; nitrogen-fixing NifU-like protein complement(2866560..2866802) Rubrobacter xylanophilus DSM 9941 4115858 YP_645586.1 CDS Rxyl_2862 NC_008148.1 2866878 2868038 D PFAM: peptidase M24; KEGG: nph:NP3076A aminopeptidase (high similarity to Xaa-Pro aminopeptidase); peptidase M24 2866878..2868038 Rubrobacter xylanophilus DSM 9941 4115859 YP_645587.1 CDS Rxyl_2863 NC_008148.1 2868055 2868378 D PFAM: Cupin 2, conserved barrel; KEGG: ttj:TTHA0104 hypothetical protein; cupin 2 barrel domain-containing protein 2868055..2868378 Rubrobacter xylanophilus DSM 9941 4115860 YP_645588.1 CDS Rxyl_2864 NC_008148.1 2868396 2868989 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(2868396..2868989) Rubrobacter xylanophilus DSM 9941 4115861 YP_645589.1 CDS Rxyl_2865 NC_008148.1 2869004 2869438 D hypothetical protein 2869004..2869438 Rubrobacter xylanophilus DSM 9941 4115862 YP_645590.1 CDS fumC NC_008148.1 2869435 2870826 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(2869435..2870826) Rubrobacter xylanophilus DSM 9941 4115863 YP_645591.1 CDS Rxyl_2867 NC_008148.1 2870900 2871499 D KEGG: ana:all2053 hypothetical protein; hypothetical protein 2870900..2871499 Rubrobacter xylanophilus DSM 9941 4115864 YP_645592.1 CDS Rxyl_2868 NC_008148.1 2871659 2872114 D PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: tac:Ta1127 hypothetical protein; hypothetical protein 2871659..2872114 Rubrobacter xylanophilus DSM 9941 4115865 YP_645593.1 CDS Rxyl_2869 NC_008148.1 2872162 2872725 D PFAM: TPR repeat; SMART: Tetratricopeptide region; KEGG: cef:CE1070 hypothetical protein; hypothetical protein 2872162..2872725 Rubrobacter xylanophilus DSM 9941 4115866 YP_645594.1 CDS Rxyl_2871 NC_008148.1 2872957 2873835 R PFAM: Rieske [2Fe-2S] region; KEGG: mpa:MAP2733c hypothetical protein; Rieske (2Fe-2S) domain-containing protein complement(2872957..2873835) Rubrobacter xylanophilus DSM 9941 4115867 YP_645595.1 CDS Rxyl_2872 NC_008148.1 2873901 2875082 R KEGG: nfa:nfa44660 hypothetical protein; hypothetical protein complement(2873901..2875082) Rubrobacter xylanophilus DSM 9941 4115868 YP_645596.1 CDS Rxyl_2873 NC_008148.1 2875347 2876291 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: gvi:gll1454 hypothetical protein; cation diffusion facilitator family transporter 2875347..2876291 Rubrobacter xylanophilus DSM 9941 4115869 YP_645597.1 CDS Rxyl_2874 NC_008148.1 2876359 2878602 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(2876359..2878602) Rubrobacter xylanophilus DSM 9941 4115870 YP_645598.1 CDS nrdR NC_008148.1 2878677 2879147 R TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone; KEGG: tel:tlr1861 ATP-cone domain protein; transcriptional regulator NrdR complement(2878677..2879147) Rubrobacter xylanophilus DSM 9941 4115871 YP_645599.1 CDS Rxyl_2876 NC_008148.1 2879482 2879985 R PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: sco:SCO4038 deaminase; tRNA-adenosine deaminase complement(2879482..2879985) Rubrobacter xylanophilus DSM 9941 4115872 YP_645600.1 CDS Rxyl_2877 NC_008148.1 2880003 2880446 R PFAM: GCN5-related N-acetyltransferase; KEGG: ade:Adeh_1022 tyrosine phosphatase; N-acetyltransferase GCN5 complement(2880003..2880446) Rubrobacter xylanophilus DSM 9941 4115873 YP_645601.1 CDS Rxyl_2878 NC_008148.1 2880439 2880858 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: gme:Gmet_0521 protein tyrosine phosphatase; protein tyrosine phosphatase complement(2880439..2880858) Rubrobacter xylanophilus DSM 9941 4115874 YP_645602.1 CDS Rxyl_2879 NC_008148.1 2880855 2881187 R PFAM: regulatory protein, ArsR; KEGG: sco:SCO6812 ArsR-family transcriptional regulator; ArsR family transcriptional regulator complement(2880855..2881187) Rubrobacter xylanophilus DSM 9941 4115875 YP_645603.1 CDS Rxyl_2880 NC_008148.1 2881177 2881917 R PFAM: putative RNA methylase UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: rpa:RPA3562 UbiE/COQ5 methyltransferase; type 11 methyltransferase complement(2881177..2881917) Rubrobacter xylanophilus DSM 9941 4115876 YP_645604.1 CDS Rxyl_2881 NC_008148.1 2881996 2883402 R KEGG: rba:RB9828 conserved hypothetical protein-putative transmembrane Mn(2+) transporter; manganese transporter NRAMP complement(2881996..2883402) Rubrobacter xylanophilus DSM 9941 4117342 YP_645605.1 CDS Rxyl_2882 NC_008148.1 2883560 2884789 R PFAM: argininosuccinate synthase; KEGG: syf:Synpcc7942_0009 argininosuccinate synthase; argininosuccinate synthase complement(2883560..2884789) Rubrobacter xylanophilus DSM 9941 4117343 YP_645606.1 CDS Rxyl_2883 NC_008148.1 2884803 2885207 R KEGG: dra:DR1715 hypothetical protein; hypothetical protein complement(2884803..2885207) Rubrobacter xylanophilus DSM 9941 4117344 YP_645607.1 CDS Rxyl_2884 NC_008148.1 2885224 2885703 R PFAM: arginine repressor; KEGG: sth:STH1836 transcriptional regulator; ArgR family transcriptional regulator complement(2885224..2885703) Rubrobacter xylanophilus DSM 9941 4117345 YP_645608.1 CDS Rxyl_2885 NC_008148.1 2885714 2886736 R KEGG: pca:Pcar_1898 N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD - binding Semialdehyde dehydrogenase, dimerisation region; N-acetyl-gamma-glutamyl-phosphate reductase complement(2885714..2886736) Rubrobacter xylanophilus DSM 9941 4117346 YP_645609.1 CDS Rxyl_2886 NC_008148.1 2886829 2888052 D KEGG: sth:STH2890 putative amino-acid acetyltransferase; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; glutamate N-acetyltransferase/N-acetylglutamate synthase 2886829..2888052 Rubrobacter xylanophilus DSM 9941 4117347 YP_645610.1 CDS Rxyl_2887 NC_008148.1 2888049 2888810 D TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: gka:GK0792 acetylglutamate kinase; N-acetylglutamate kinase 2888049..2888810 Rubrobacter xylanophilus DSM 9941 4117348 YP_645611.1 CDS Rxyl_2888 NC_008148.1 2888807 2890000 D KEGG: mta:Moth_2287 acetylornithine and succinylornithine aminotransferases; TIGRFAM: acetylornithine and succinylornithine aminotransferases; PFAM: aminotransferase class-III; acetylornithine aminotransferase 2888807..2890000 Rubrobacter xylanophilus DSM 9941 4117349 YP_645612.1 CDS Rxyl_2889 NC_008148.1 2889997 2890950 D KEGG: tko:TK0871 ornithine carbamoyltransferase; TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; ornithine carbamoyltransferase 2889997..2890950 Rubrobacter xylanophilus DSM 9941 4117350 YP_645613.1 CDS Rxyl_2890 NC_008148.1 2891257 2892522 R TIGRFAM: Cysteine desulphurase related; PFAM: aminotransferase, class V; KEGG: ava:Ava_1826 cysteine desulphurase related; cysteine desulfurase-like protein complement(2891257..2892522) Rubrobacter xylanophilus DSM 9941 4117351 YP_645614.1 CDS Rxyl_2891 NC_008148.1 2892545 2893978 R TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: sru:SRU_1355 O-succinylbenzoate-CoA ligase; o-succinylbenzoate--CoA ligase complement(2892545..2893978) Rubrobacter xylanophilus DSM 9941 4117352 YP_645615.1 CDS Rxyl_2892 NC_008148.1 2893971 2894948 R PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sru:SRU_1354 O-succinylbenzoic acid (OSB) synthetase; mandelate racemase/muconate lactonizing-like protein complement(2893971..2894948) Rubrobacter xylanophilus DSM 9941 4117353 YP_645616.1 CDS Rxyl_2893 NC_008148.1 2895038 2895889 R catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase complement(2895038..2895889) Rubrobacter xylanophilus DSM 9941 4117354 YP_645617.1 CDS Rxyl_2894 NC_008148.1 2895894 2896646 R PFAM: alpha/beta hydrolase fold; KEGG: gka:GK2874 hypothetical protein; alpha/beta hydrolase fold protein domain-containing protein complement(2895894..2896646) Rubrobacter xylanophilus DSM 9941 4117355 YP_645618.1 CDS Rxyl_2895 NC_008148.1 2896696 2897316 R PFAM: protein of unknown function DUF1211; KEGG: mhu:Mhun_1689 protein of unknown function DUF1211; hypothetical protein complement(2896696..2897316) Rubrobacter xylanophilus DSM 9941 4117356 YP_645619.1 CDS Rxyl_2896 NC_008148.1 2897368 2899092 R TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: thiamine pyrophosphate enzyme-like TPP binding region; KEGG: sru:SRU_1351 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase complement(2897368..2899092) Rubrobacter xylanophilus DSM 9941 4117357 YP_645620.1 CDS Rxyl_2897 NC_008148.1 2899067 2900488 R TIGRFAM: isochorismate synthases; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: sru:SRU_1350 putative isochorismate synthase; isochorismate synthase complement(2899067..2900488) Rubrobacter xylanophilus DSM 9941 4117358 YP_645621.1 CDS Rxyl_2898 NC_008148.1 2900552 2901997 R TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: sme:SMc02341 putative sugar kinase protein; xylulokinase complement(2900552..2901997) Rubrobacter xylanophilus DSM 9941 4117359 YP_645622.1 CDS Rxyl_2899 NC_008148.1 2902069 2902716 R PFAM: peptidase C60, sortase A and B; KEGG: cpe:CPE2315 sortase, putative; peptidase C60, sortase A and B complement(2902069..2902716) Rubrobacter xylanophilus DSM 9941 4117360 YP_645623.1 CDS Rxyl_2900 NC_008148.1 2902933 2903445 D hypothetical protein 2902933..2903445 Rubrobacter xylanophilus DSM 9941 4117361 YP_645624.1 CDS Rxyl_2901 NC_008148.1 2903499 2904125 D PFAM: BioY protein; KEGG: mba:Mbar_A0586 biotin synthesis BioY protein; BioY protein 2903499..2904125 Rubrobacter xylanophilus DSM 9941 4117381 YP_645625.1 CDS Rxyl_2902 NC_008148.1 2904137 2904505 D hypothetical protein 2904137..2904505 Rubrobacter xylanophilus DSM 9941 4117382 YP_645626.1 CDS Rxyl_2903 NC_008148.1 2904519 2905835 R TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: tfu:Tfu_0690 bacterial 4-aminobutyrate aminotransferase; 4-aminobutyrate aminotransferase complement(2904519..2905835) Rubrobacter xylanophilus DSM 9941 4117383 YP_645627.1 CDS Rxyl_2905 NC_008148.1 2907287 2908771 R PFAM: aldehyde dehydrogenase; KEGG: btk:BT9727_0295 succinate-semialdehyde dehydrogenase (NAD(P)+); succinate semialdehyde dehydrogenase complement(2907287..2908771) Rubrobacter xylanophilus DSM 9941 4117384 YP_645628.1 CDS Rxyl_2906 NC_008148.1 2909036 2910427 R PFAM: Na+/solute symporter; KEGG: pfl:PFL_0326 sodium-solute symporter, putative; Na+/solute symporter complement(2909036..2910427) Rubrobacter xylanophilus DSM 9941 4117385 YP_645629.1 CDS Rxyl_2907 NC_008148.1 2910504 2911457 R TIGRFAM: agmatinase, putative; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: tfu:Tfu_0058 putative agmatinase; agmatinase complement(2910504..2911457) Rubrobacter xylanophilus DSM 9941 4117386 YP_645630.1 CDS Rxyl_2908 NC_008148.1 2911632 2912756 R TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT-like; KEGG: ttj:TTHA0216 alanine dehydrogenase; L-alanine dehydrogenase complement(2911632..2912756) Rubrobacter xylanophilus DSM 9941 4117387 YP_645631.1 CDS Rxyl_2909 NC_008148.1 2912852 2913730 D PFAM: regulatory protein, MerR helix-turn-helix motif Cupin 2, conserved barrel; KEGG: chy:CHY_0677 transcriptional regulator, MerR family; MerR family transcriptional regulator 2912852..2913730 Rubrobacter xylanophilus DSM 9941 4117388 YP_645632.1 CDS Rxyl_2910 NC_008148.1 2913727 2915547 D PFAM: peptidase S9, prolyl oligopeptidase active site region; KEGG: hma:rrnAC2119 hypothetical protein; peptidase S9, prolyl oligopeptidase active site region 2913727..2915547 Rubrobacter xylanophilus DSM 9941 4117389 YP_645633.1 CDS Rxyl_2911 NC_008148.1 2915615 2916979 D PFAM: aminotransferase class-III; KEGG: sco:SCO5655 putative aminotransferase; hypothetical protein 2915615..2916979 Rubrobacter xylanophilus DSM 9941 4117390 YP_645634.1 CDS Rxyl_2912 NC_008148.1 2917044 2918177 D KEGG: sme:SMc00771 probable putrescine transport ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATP-binding subunit; PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; spermidine/putrescine ABC transporter ATP-binding subunit 2917044..2918177 Rubrobacter xylanophilus DSM 9941 4117391 YP_645635.1 CDS Rxyl_2913 NC_008148.1 2918174 2919265 D PFAM: extracellular solute-binding protein, family 1; KEGG: sth:STH468 spermidine/putrescine ABC transporter spermidine/putrescine-binding protein; extracellular solute-binding protein 2918174..2919265 Rubrobacter xylanophilus DSM 9941 4117392 YP_645636.1 CDS Rxyl_2914 NC_008148.1 2919297 2920133 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bca:BCE1399 spermidine/putrescine ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component 2919297..2920133 Rubrobacter xylanophilus DSM 9941 4117393 YP_645637.1 CDS Rxyl_2915 NC_008148.1 2920135 2920938 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bms:BR1609 spermidine/putrescine ABC transporter, permease protein, putative; binding-protein-dependent transport system inner membrane protein 2920135..2920938 Rubrobacter xylanophilus DSM 9941 4117394 YP_645638.1 CDS Rxyl_2916 NC_008148.1 2920935 2921654 D PFAM: beta-lactamase-like; KEGG: lmf:LMOf2365_1817 metallo-beta-lactamase family protein; beta-lactamase-like protein 2920935..2921654 Rubrobacter xylanophilus DSM 9941 4117395 YP_645639.1 CDS Rxyl_2917 NC_008148.1 2921688 2923127 D PFAM: aldehyde dehydrogenase; KEGG: sco:SCO5657 aldehyde dehydrogenase; aldehyde dehydrogenase 2921688..2923127 Rubrobacter xylanophilus DSM 9941 4117396 YP_645640.1 CDS Rxyl_2918 NC_008148.1 2923181 2924416 D PFAM: major facilitator superfamily MFS_1; KEGG: deh:cbdb_A973 major facilitator family transporter; major facilitator transporter 2923181..2924416 Rubrobacter xylanophilus DSM 9941 4117397 YP_645641.1 CDS Rxyl_2919 NC_008148.1 2924403 2926148 R PFAM: GAF Stage II sporulation E PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif Protein phosphatase 2C-like; KEGG: tfu:Tfu_0287 protein phosphatase 2C-like, withe GAF domain; putative PAS/PAC sensor protein complement(2924403..2926148) Rubrobacter xylanophilus DSM 9941 4117398 YP_645642.1 CDS Rxyl_2920 NC_008148.1 2926246 2926878 D PFAM: manganese and iron superoxide dismutase; KEGG: gka:GK2457 manganese superoxide dismutase; superoxide dismutase 2926246..2926878 Rubrobacter xylanophilus DSM 9941 4117399 YP_645643.1 CDS Rxyl_2921 NC_008148.1 2926964 2928322 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ttj:TTHA1835 NADH oxidase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2926964..2928322 Rubrobacter xylanophilus DSM 9941 4115877 YP_645644.1 CDS Rxyl_2922 NC_008148.1 2928446 2930011 R catalyzes the conversion of 1-proline-5-carboxylate dehydrogenase to L-glutamate; 1-pyrroline-5-carboxylate dehydrogenase complement(2928446..2930011) Rubrobacter xylanophilus DSM 9941 4115878 YP_645645.1 CDS Rxyl_2923 NC_008148.1 2930015 2930935 R PFAM: Proline dehydrogenase; KEGG: dps:DP2492 similar to proline dehydrogenase; L-proline dehydrogenase complement(2930015..2930935) Rubrobacter xylanophilus DSM 9941 4115879 YP_645646.1 CDS Rxyl_2924 NC_008148.1 2930972 2932393 R PFAM: amino acid permease-associated region; KEGG: sco:SCO0938 putative amino acid transporter protein; amino acid permease-associated protein complement(2930972..2932393) Rubrobacter xylanophilus DSM 9941 4115880 YP_645647.1 CDS Rxyl_2925 NC_008148.1 2932527 2934119 D PFAM: aldehyde dehydrogenase; KEGG: fra:Francci3_2872 aldehyde dehydrogenase; delta-1-piperideine-6-carboxylate dehydrogenase 2932527..2934119 Rubrobacter xylanophilus DSM 9941 4115881 YP_645648.1 CDS solA NC_008148.1 2934126 2935253 D catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyltryptophan oxidase 2934126..2935253 Rubrobacter xylanophilus DSM 9941 4115882 YP_645649.1 CDS Rxyl_2927 NC_008148.1 2935250 2936167 D catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 2935250..2936167 Rubrobacter xylanophilus DSM 9941 4115883 YP_645650.1 CDS Rxyl_2928 NC_008148.1 2936243 2936635 D PFAM: regulatory protein, ArsR transcriptional regulator TrmB; KEGG: sto:ST1076 hypothetical transcriptional regulator; transcriptional regulator, TrmB 2936243..2936635 Rubrobacter xylanophilus DSM 9941 4115884 YP_645651.1 CDS Rxyl_2929 NC_008148.1 2936718 2937812 D KEGG: tth:TTC1121 hypothetical protein; hypothetical protein 2936718..2937812 Rubrobacter xylanophilus DSM 9941 4115885 YP_645652.1 CDS Rxyl_2930 NC_008148.1 2937954 2939315 D PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: pfu:PF1670 alkaline serine protease; peptidase S8/S53 subtilisin kexin sedolisin 2937954..2939315 Rubrobacter xylanophilus DSM 9941 4115886 YP_645653.1 CDS Rxyl_2931 NC_008148.1 2939334 2940050 D hypothetical protein 2939334..2940050 Rubrobacter xylanophilus DSM 9941 4115887 YP_645654.1 CDS Rxyl_2932 NC_008148.1 2940019 2940531 R PFAM: Phosphoglycerate mutase; KEGG: tth:TTC0635 hypothetical protein; phosphohistidine phosphatase SixA complement(2940019..2940531) Rubrobacter xylanophilus DSM 9941 4115888 YP_645655.1 CDS Rxyl_2933 NC_008148.1 2940536 2942098 R PFAM: CHAD adenylate cyclase; KEGG: mag:amb1972 hypothetical protein; CHAD domain-containing protein complement(2940536..2942098) Rubrobacter xylanophilus DSM 9941 4115889 YP_645656.1 CDS Rxyl_2934 NC_008148.1 2942185 2942907 D PFAM: MgtC/SapB transporter; KEGG: chy:CHY_1773 MgtC family protein; MgtC/SapB transporter 2942185..2942907 Rubrobacter xylanophilus DSM 9941 4115890 YP_645657.1 CDS Rxyl_2935 NC_008148.1 2942882 2944990 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(2942882..2944990) Rubrobacter xylanophilus DSM 9941 4115891 YP_645658.1 CDS Rxyl_2936 NC_008148.1 2945201 2945530 D KEGG: tte:TTE0893 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; hypothetical protein 2945201..2945530 Rubrobacter xylanophilus DSM 9941 4115892 YP_645659.1 CDS Rxyl_2937 NC_008148.1 2945552 2946139 R PFAM: peptidase C60, sortase A and B; KEGG: tfu:Tfu_2383 peptidase C60, sortase A and B; peptidase C60, sortase A and B complement(2945552..2946139) Rubrobacter xylanophilus DSM 9941 4115893 YP_645660.1 CDS Rxyl_2938 NC_008148.1 2946297 2947592 D PFAM: alanine dehydrogenase/PNT-like; KEGG: ana:all3410 nicotinamide nucleotide transhydrogenase, subunit alpha; NAD(P)(+) transhydrogenase 2946297..2947592 Rubrobacter xylanophilus DSM 9941 4115894 YP_645661.1 CDS Rxyl_2939 NC_008148.1 2947594 2947899 D KEGG: mle:ML2635 pyridine transhydrogenase subunit [alpha]2; pyridine transhydrogenase subunit alpha 2947594..2947899 Rubrobacter xylanophilus DSM 9941 4115895 YP_645662.1 CDS Rxyl_2940 NC_008148.1 2947905 2949311 D PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: ana:all3408 nicotinamide nucleotide transhydrogenase, subunit beta; NAD(P) transhydrogenase subunit beta 2947905..2949311 Rubrobacter xylanophilus DSM 9941 4115896 YP_645663.1 CDS Rxyl_2941 NC_008148.1 2949367 2950035 D PFAM: Rhodanese-like regulatory protein, ArsR; KEGG: tbd:Tbd_2736 rhodanese-like protein; ArsR family transcriptional regulator 2949367..2950035 Rubrobacter xylanophilus DSM 9941 4115936 YP_645664.1 CDS Rxyl_2942 NC_008148.1 2950051 2951160 D SMART: Rhodanese-like; KEGG: hal:VNG7160 hypothetical protein; rhodanese-like protein 2950051..2951160 Rubrobacter xylanophilus DSM 9941 4115937 YP_645665.1 CDS Rxyl_2943 NC_008148.1 2951170 2952426 D PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B2904 major facilitator superfamily (MFS_1) transporter; major facilitator transporter 2951170..2952426 Rubrobacter xylanophilus DSM 9941 4115938 YP_645666.1 CDS Rxyl_2944 NC_008148.1 2952446 2953756 R PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: rso:RS03119 putative transmembrane protein; monooxygenase complement(2952446..2953756) Rubrobacter xylanophilus DSM 9941 4115939 YP_645667.1 CDS Rxyl_2945 NC_008148.1 2953766 2954047 R PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase complement(2953766..2954047) Rubrobacter xylanophilus DSM 9941 4115940 YP_645668.1 CDS Rxyl_2946 NC_008148.1 2954200 2956545 R PFAM: regulatory protein, LuxR Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; KEGG: fra:Francci3_0992 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(2954200..2956545) Rubrobacter xylanophilus DSM 9941 4115941 YP_645669.1 CDS Rxyl_2947 NC_008148.1 2956664 2957593 R PFAM: beta-lactamase-like; KEGG: tth:TTC0458 metallo-beta-lactamase protein; beta-lactamase-like protein complement(2956664..2957593) Rubrobacter xylanophilus DSM 9941 4115942 YP_645670.1 CDS Rxyl_2948 NC_008148.1 2957716 2958927 D catalyzes the interconversion of 3-phosphoglycerate and 2-phosphoglycerate; this enzyme does not require the cofactor 2,3-bisphosphoglycerate as a phosphate donor; BPG-independent PGAM; aPGAM; cofactor-independent phosphoglycerate mutase 2957716..2958927 Rubrobacter xylanophilus DSM 9941 4115943 YP_645671.1 CDS Rxyl_2949 NC_008148.1 2958896 2959582 D PFAM: Uracil-DNA glycosylase superfamily; KEGG: ade:Adeh_3631 uracil-DNA glycosylase superfamily; uracil-DNA glycosylase superfamily protein 2958896..2959582 Rubrobacter xylanophilus DSM 9941 4115944 YP_645672.1 CDS Rxyl_2950 NC_008148.1 2959588 2960109 D hypothetical protein 2959588..2960109 Rubrobacter xylanophilus DSM 9941 4115945 YP_645673.1 CDS Rxyl_2951 NC_008148.1 2960202 2960771 D TIGRFAM: uncharacterized domain HDIG; PFAM: metal-dependent phosphohydrolase, HD subdomain; KEGG: ttj:TTHA1791 putative hydrolase (HD domain); metal dependent phosphohydrolase 2960202..2960771 Rubrobacter xylanophilus DSM 9941 4115946 YP_645674.1 CDS Rxyl_2952 NC_008148.1 2960777 2961832 D KEGG: sth:STH512 D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: ATP-dependent carboxylate-amine ligase-like, ATP-grasp D-alanine--D-alanine ligase-like; D-alanine--D-alanine ligase 2960777..2961832 Rubrobacter xylanophilus DSM 9941 4115947 YP_645675.1 CDS Rxyl_2953 NC_008148.1 2961832 2962827 D PFAM: MscS Mechanosensitive ion channel; KEGG: mta:Moth_0082 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS 2961832..2962827 Rubrobacter xylanophilus DSM 9941 4115948 YP_645676.1 CDS Rxyl_2954 NC_008148.1 2962824 2963477 R PFAM: peptidase S16, lon-like; KEGG: sru:SRU_1204 ATP-dependent protease La domain protein; peptidase S16, lon-like protein complement(2962824..2963477) Rubrobacter xylanophilus DSM 9941 4115949 YP_645677.1 CDS Rxyl_2955 NC_008148.1 2963740 2965071 R KEGG: tvo:TVN0083 cytochrome bd-I oxidase subunit I; cytochrome bd-type quinol oxidase subunit 1-like protein complement(2963740..2965071) Rubrobacter xylanophilus DSM 9941 4115950 YP_645678.1 CDS Rxyl_2956 NC_008148.1 2965084 2965617 R KEGG: bld:BLi02389 menaquinolcytochrome c oxidoreductase (cytochrome b/c subunit); RBL03466; cytochromesubunit B of the bc complex-like protein complement(2965084..2965617) Rubrobacter xylanophilus DSM 9941 4115951 YP_645679.1 CDS Rxyl_2957 NC_008148.1 2965692 2966465 R PFAM: cytochrome b/b6-like; KEGG: btk:BT9727_1405 menaquinol-cytochrome c reductase, cytochrome b subunit; cytochrome b/b6-like protein complement(2965692..2966465) Rubrobacter xylanophilus DSM 9941 4115952 YP_645680.1 CDS Rxyl_2958 NC_008148.1 2966482 2967153 R PFAM: Rieske [2Fe-2S] region; KEGG: gme:Gmet_1922 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein complement(2966482..2967153) Rubrobacter xylanophilus DSM 9941 4115953 YP_645681.1 CDS Rxyl_2959 NC_008148.1 2967245 2968597 R KEGG: sao:SAOUHSC_01031 cytochrome d ubiquinol oxidase, subunit I, putative; hypothetical protein complement(2967245..2968597) Rubrobacter xylanophilus DSM 9941 4115954 YP_645682.1 CDS Rxyl_2960 NC_008148.1 2968611 2969252 R hypothetical protein complement(2968611..2969252) Rubrobacter xylanophilus DSM 9941 4115682 YP_645683.1 CDS Rxyl_2961 NC_008148.1 2969427 2970116 D hypothetical protein 2969427..2970116 Rubrobacter xylanophilus DSM 9941 4115683 YP_645684.1 CDS Rxyl_2962 NC_008148.1 2970197 2971555 D PFAM: Xanthine/uracil/vitamin C permease; KEGG: oih:OB0723 hypothetical protein; xanthine/uracil/vitamin C permease 2970197..2971555 Rubrobacter xylanophilus DSM 9941 4115684 YP_645685.1 CDS Rxyl_2963 NC_008148.1 2971691 2971960 D PFAM: Transglycosylase-associated protein; KEGG: sdy:SDY_1695 hypothetical protein; transglycosylase-associated protein 2971691..2971960 Rubrobacter xylanophilus DSM 9941 4115685 YP_645686.1 CDS Rxyl_2964 NC_008148.1 2972031 2972498 D PFAM: protein of unknown function DUF322; KEGG: fra:Francci3_3957 protein of unknown function DUF322; hypothetical protein 2972031..2972498 Rubrobacter xylanophilus DSM 9941 4115686 YP_645687.1 CDS Rxyl_2965 NC_008148.1 2972514 2972807 D hypothetical protein 2972514..2972807 Rubrobacter xylanophilus DSM 9941 4115687 YP_645688.1 CDS Rxyl_2966 NC_008148.1 2972804 2973382 D hypothetical protein 2972804..2973382 Rubrobacter xylanophilus DSM 9941 4115688 YP_645689.1 CDS Rxyl_2967 NC_008148.1 2973379 2973942 D hypothetical protein 2973379..2973942 Rubrobacter xylanophilus DSM 9941 4115689 YP_645690.1 CDS Rxyl_2968 NC_008148.1 2973964 2974161 D hypothetical protein 2973964..2974161 Rubrobacter xylanophilus DSM 9941 4115690 YP_645691.1 CDS Rxyl_2969 NC_008148.1 2974174 2974671 D KEGG: atc:AGR_L_206 hypothetical protein; hypothetical protein 2974174..2974671 Rubrobacter xylanophilus DSM 9941 4115691 YP_645692.1 CDS Rxyl_2970 NC_008148.1 2974729 2975547 D PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: gka:GK1581 D-alanyl-D-alanine carboxypeptidase; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins 2974729..2975547 Rubrobacter xylanophilus DSM 9941 4115692 YP_645693.1 CDS Rxyl_2971 NC_008148.1 2975540 2976325 D TIGRFAM: HAD-superfamily hydrolase subfamily IIB; PFAM: trehalose-phosphatase sucrose-6F-phosphate phosphohydrolase; KEGG: mth:MTH1760 trehalose-6-phosphate phophatase related protein; HAD family hydrolase 2975540..2976325 Rubrobacter xylanophilus DSM 9941 4115693 YP_645694.1 CDS Rxyl_2972 NC_008148.1 2976322 2977776 R PFAM: glycosyl transferase, family 20; KEGG: fra:Francci3_1478 alpha,alpha-trehalose-phosphate synthase (UDP-forming); alpha,alpha-trehalose-phosphate synthase complement(2976322..2977776) Rubrobacter xylanophilus DSM 9941 4115694 YP_645695.1 CDS Rxyl_2973 NC_008148.1 2977814 2979064 R PFAM: glycosyl transferase, group 1; KEGG: pho:PH1035 hypothetical protein; group 1 glycosyl transferase complement(2977814..2979064) Rubrobacter xylanophilus DSM 9941 4115695 YP_645696.1 CDS Rxyl_2974 NC_008148.1 2979169 2979624 R PFAM: ATP-binding region, ATPase-like; KEGG: oih:OB0629 negative regulator of sigma-B activity (switch protein/serine kinase, anti-sigma factor); putative anti-sigma regulatory factor complement(2979169..2979624) Rubrobacter xylanophilus DSM 9941 4115696 YP_645697.1 CDS Rxyl_2975 NC_008148.1 2979729 2980565 R PFAM: band 7 protein; KEGG: chy:CHY_0857 SPFH domain / Band 7 family protein; hypothetical protein complement(2979729..2980565) Rubrobacter xylanophilus DSM 9941 4115697 YP_645698.1 CDS Rxyl_2976 NC_008148.1 2980712 2982283 R PFAM: NLP/P60; KEGG: cgb:cg1735 secreted cell wall-associated hydrolase (invasion-associated protein); PgdS peptidase complement(2980712..2982283) Rubrobacter xylanophilus DSM 9941 4115698 YP_645699.1 CDS Rxyl_2977 NC_008148.1 2982515 2983021 R hypothetical protein complement(2982515..2983021) Rubrobacter xylanophilus DSM 9941 4115699 YP_645700.1 CDS Rxyl_2978 NC_008148.1 2983014 2983619 R PFAM: CDP-alcohol phosphatidyltransferase; KEGG: deh:cbdb_A940 CDP-alcohol phosphatidyltransferase family protein; CDP-alcohol phosphatidyltransferase complement(2983014..2983619) Rubrobacter xylanophilus DSM 9941 4115700 YP_645701.1 CDS Rxyl_2979 NC_008148.1 2983616 2984779 R PFAM: protein of unknown function UPF0118; KEGG: sth:STH2385 hypothetical protein; hypothetical protein complement(2983616..2984779) Rubrobacter xylanophilus DSM 9941 4115701 YP_645702.1 CDS Rxyl_2980 NC_008148.1 2984859 2985695 D KEGG: ade:Adeh_1681 PE-PGRS family protein; hypothetical protein 2984859..2985695 Rubrobacter xylanophilus DSM 9941 4115702 YP_645703.1 CDS Rxyl_2981 NC_008148.1 2985727 2986374 D PFAM: peptidase M50; KEGG: lin:lin2708 hypothetical protein; peptidase M50 2985727..2986374 Rubrobacter xylanophilus DSM 9941 4115703 YP_645704.1 CDS Rxyl_2982 NC_008148.1 2986496 2988322 R PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like PAS fold-4; SMART: PAS; KEGG: tte:TTE2688 sensory transduction histidine kinases; multi-sensor signal transduction histidine kinase complement(2986496..2988322) Rubrobacter xylanophilus DSM 9941 4115704 YP_645705.1 CDS Rxyl_2983 NC_008148.1 2988309 2988995 R PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: mta:Moth_0070 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(2988309..2988995) Rubrobacter xylanophilus DSM 9941 4115705 YP_645706.1 CDS Rxyl_2984 NC_008148.1 2989056 2990738 R contains 3'-5'exonuclease domain; hypothetical protein complement(2989056..2990738) Rubrobacter xylanophilus DSM 9941 4115706 YP_645707.1 CDS Rxyl_2985 NC_008148.1 2990839 2991891 R SMART: Helix-hairpin-helix DNA-binding, class 1; helix-hairpin-helix DNA-binding protein complement(2990839..2991891) Rubrobacter xylanophilus DSM 9941 4115707 YP_645708.1 CDS Rxyl_2986 NC_008148.1 2991885 2993114 R PFAM: molybdopterin binding domain MoeA-like, domain I and II MoeA-like, domain IV; KEGG: gme:Gmet_1038 molybdopterin biosynthesis protein MoeA; molybdopterin molybdochelatase complement(2991885..2993114) Rubrobacter xylanophilus DSM 9941 4115708 YP_645709.1 CDS Rxyl_2987 NC_008148.1 2993181 2994446 R KEGG: gka:GK1970 hypothetical protein; hypothetical protein complement(2993181..2994446) Rubrobacter xylanophilus DSM 9941 4115709 YP_645710.1 CDS Rxyl_2988 NC_008148.1 2994453 2995472 R KEGG: chy:CHY_1259 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase complement(2994453..2995472) Rubrobacter xylanophilus DSM 9941 4115710 YP_645711.1 CDS Rxyl_2989 NC_008148.1 2995469 2996641 R KEGG: dde:Dde_0128 hypothetical protein; hypothetical protein complement(2995469..2996641) Rubrobacter xylanophilus DSM 9941 4115711 YP_645712.1 CDS Rxyl_2990 NC_008148.1 2996750 2997667 D PFAM: protein of unknown function DUF849; KEGG: sth:STH64 hypothetical protein; 3-keto-5-aminohexanoate cleavage protein 2996750..2997667 Rubrobacter xylanophilus DSM 9941 4115712 YP_645713.1 CDS Rxyl_2991 NC_008148.1 2997678 2998691 D KEGG: pfl:PFL_3476 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE-like; 2-dehydropantoate 2-reductase 2997678..2998691 Rubrobacter xylanophilus DSM 9941 4115713 YP_645714.1 CDS Rxyl_2992 NC_008148.1 2998773 3000236 D KEGG: hma:pNG7286 hypothetical protein; hypothetical protein 2998773..3000236 Rubrobacter xylanophilus DSM 9941 4115714 YP_645715.1 CDS Rxyl_2993 NC_008148.1 3000369 3001034 R PFAM: protein of unknown function DUF162; KEGG: sth:STH93 hypothetical protein; hypothetical protein complement(3000369..3001034) Rubrobacter xylanophilus DSM 9941 4115715 YP_645716.1 CDS Rxyl_2994 NC_008148.1 3001031 3002500 R TIGRFAM: Iron-sulfur cluster binding protein; KEGG: bat:BAS3036 iron-sulfur cluster-binding protein; Iron-sulfur cluster binding protein complement(3001031..3002500) Rubrobacter xylanophilus DSM 9941 4115716 YP_645717.1 CDS Rxyl_2995 NC_008148.1 3002493 3003233 R PFAM: protein of unknown function DUF224, cysteine-rich region; KEGG: sth:STH95 glycolate oxidase; hypothetical protein complement(3002493..3003233) Rubrobacter xylanophilus DSM 9941 4115717 YP_645718.1 CDS Rxyl_2996 NC_008148.1 3003318 3004031 D PFAM: regulatory protein, TetR; KEGG: fra:Francci3_1116 transcriptional regulator, TetR family; TetR family transcriptional regulator 3003318..3004031 Rubrobacter xylanophilus DSM 9941 4115718 YP_645719.1 CDS Rxyl_2997 NC_008148.1 3004028 3005434 D KEGG: pca:Pcar_1703 coenzyme F390 synthetase-like; coenzyme F390 synthetase-like protein 3004028..3005434 Rubrobacter xylanophilus DSM 9941 4115719 YP_645720.1 CDS Rxyl_2998 NC_008148.1 3005521 3006798 D KEGG: gka:GK1970 hypothetical protein; hypothetical protein 3005521..3006798 Rubrobacter xylanophilus DSM 9941 4115720 YP_645721.1 CDS Rxyl_2999 NC_008148.1 3006795 3007895 R PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase ferredoxin-dependent glutamate synthase; KEGG: ava:Ava_1430 FMN-dependent alpha-hydroxy acid dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase complement(3006795..3007895) Rubrobacter xylanophilus DSM 9941 4115798 YP_645722.1 CDS Rxyl_3000 NC_008148.1 3007882 3008607 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bcl:ABC3762 3-oxoacyl-[acyl-carrier-protein] reductase; short-chain dehydrogenase/reductase SDR complement(3007882..3008607) Rubrobacter xylanophilus DSM 9941 4115799 YP_645723.1 CDS Rxyl_3001 NC_008148.1 3008682 3009713 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ctc:CTC00907 D-ribose-binding periplasmic protein; periplasmic binding protein/LacI transcriptional regulator complement(3008682..3009713) Rubrobacter xylanophilus DSM 9941 4115800 YP_645724.1 CDS Rxyl_3002 NC_008148.1 3009737 3010747 R PFAM: inner-membrane translocator; KEGG: sco:SCO2747 bifunctional carbohydrate binding and transport protein; inner-membrane translocator complement(3009737..3010747) Rubrobacter xylanophilus DSM 9941 4115801 YP_645725.1 CDS Rxyl_3003 NC_008148.1 3010744 3012231 R PFAM: ABC transporter related; SMART: ATPase; KEGG: atc:AGR_C_5112 ABC transporter protein, ATP binding component; ABC transporter-like protein complement(3010744..3012231) Rubrobacter xylanophilus DSM 9941 4115802 YP_645726.1 CDS Rxyl_3004 NC_008148.1 3012365 3013057 R PFAM: regulatory protein GntR, HTH GntR-like; KEGG: sma:SAV6651 putative GntR-family transcriptional regulator; GntR family transcriptional regulator complement(3012365..3013057) Rubrobacter xylanophilus DSM 9941 4115803 YP_645727.1 CDS Rxyl_3005 NC_008148.1 3013191 3014351 D PFAM: extracellular solute-binding protein, family 1; KEGG: bmb:BruAb1_0230 sugar ABC transporter, periplasmic sugar-binding protein; extracellular solute-binding protein 3013191..3014351 Rubrobacter xylanophilus DSM 9941 4115804 YP_645728.1 CDS Rxyl_3006 NC_008148.1 3014348 3015307 D PFAM: aldo/keto reductase; KEGG: sco:SCO7162 oxidoreductase; aldo/keto reductase 3014348..3015307 Rubrobacter xylanophilus DSM 9941 4115805 YP_645729.1 CDS Rxyl_3007 NC_008148.1 3015297 3016055 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mta:Moth_0426 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3015297..3016055) Rubrobacter xylanophilus DSM 9941 4115806 YP_645730.1 CDS Rxyl_3008 NC_008148.1 3016090 3017343 R PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: hal:VNG0442G RspA; mandelate racemase/muconate lactonizing-like protein complement(3016090..3017343) Rubrobacter xylanophilus DSM 9941 4115807 YP_645731.1 CDS Rxyl_3009 NC_008148.1 3017345 3018127 R PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: rba:RB2242 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(3017345..3018127) Rubrobacter xylanophilus DSM 9941 4115808 YP_645732.1 CDS Rxyl_3010 NC_008148.1 3018127 3019152 R PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: sil:SPO0596 sorbitol dehydrogenase, putative; alcohol dehydrogenase GroES-like protein complement(3018127..3019152) Rubrobacter xylanophilus DSM 9941 4115809 YP_645733.1 CDS Rxyl_3011 NC_008148.1 3019351 3020106 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB1748 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 3019351..3020106 Rubrobacter xylanophilus DSM 9941 4115810 YP_645734.1 CDS Rxyl_3012 NC_008148.1 3020103 3021410 D PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: jan:Jann_2104 mandelate racemase/muconate lactonizing enzyme; mandelate racemase/muconate lactonizing-like protein 3020103..3021410 Rubrobacter xylanophilus DSM 9941 4115811 YP_645735.1 CDS Rxyl_3013 NC_008148.1 3021407 3022117 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: reu:Reut_B4725 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3021407..3022117 Rubrobacter xylanophilus DSM 9941 4115812 YP_645736.1 CDS Rxyl_3014 NC_008148.1 3022195 3022623 D hypothetical protein 3022195..3022623 Rubrobacter xylanophilus DSM 9941 4115813 YP_645737.1 CDS Rxyl_3015 NC_008148.1 3022620 3023369 R PFAM: CobB/CobQ-like glutamine amidotransferase; KEGG: tte:TTE0007 predicted glutamine amidotransferase; CobB/CobQ-like glutamine amidotransferase complement(3022620..3023369) Rubrobacter xylanophilus DSM 9941 4115814 YP_645738.1 CDS Rxyl_3016 NC_008148.1 3023366 3024676 R PFAM: Mur ligase, middle region Domain of unknown function DUF1727; KEGG: sth:STH1066 UDP-N-acetylmuramyl tripeptide synthase; hypothetical protein complement(3023366..3024676) Rubrobacter xylanophilus DSM 9941 4115815 YP_645739.1 CDS Rxyl_3017 NC_008148.1 3024867 3025544 D PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: dra:DR0743 response regulator; two component transcriptional regulator 3024867..3025544 Rubrobacter xylanophilus DSM 9941 4115816 YP_645740.1 CDS Rxyl_3018 NC_008148.1 3025546 3026961 D PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: mta:Moth_1130 periplasmic sensor signal transduction histidine kinase; periplasmic sensor signal transduction histidine kinase 3025546..3026961 Rubrobacter xylanophilus DSM 9941 4115817 YP_645741.1 CDS Rxyl_3019 NC_008148.1 3027050 3027670 D PFAM: Propeptide, PepSY amd peptidase M4; KEGG: sco:SCO5402 Asp-rich hydrophilic protein (putative membrane protein); peptidase 3027050..3027670 Rubrobacter xylanophilus DSM 9941 4115955 YP_645742.1 CDS Rxyl_3020 NC_008148.1 3027711 3028685 D PFAM: peptidase S1 and S6, chymotrypsin/Hap PDZ/DHR/GLGF; KEGG: pca:Pcar_0175 serine protease; peptidase S1 and S6, chymotrypsin/Hap 3027711..3028685 Rubrobacter xylanophilus DSM 9941 4115956 YP_645743.1 CDS Rxyl_3021 NC_008148.1 3028691 3028936 D hypothetical protein 3028691..3028936 Rubrobacter xylanophilus DSM 9941 4115957 YP_645744.1 CDS Rxyl_3022 NC_008148.1 3028929 3029630 R PFAM: Integral membrane protein TerC; KEGG: nmu:Nmul_A2473 integral membrane protein TerC; integral membrane protein TerC complement(3028929..3029630) Rubrobacter xylanophilus DSM 9941 4115958 YP_645745.1 CDS Rxyl_3023 NC_008148.1 3029834 3031024 R PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: mlo:mlr7936 diaminopropionate ammonia-lyase; pyridoxal-5'-phosphate-dependent enzyme subunit beta complement(3029834..3031024) Rubrobacter xylanophilus DSM 9941 4115959 YP_645746.1 CDS Rxyl_3024 NC_008148.1 3031075 3032115 R KEGG: sma:SAV2765 putative ABC transporter ATP-binding protein; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein complement(3031075..3032115) Rubrobacter xylanophilus DSM 9941 4115960 YP_645747.1 CDS Rxyl_3025 NC_008148.1 3032112 3033164 R KEGG: sma:SAV3173 putative ABC transporter intracellular ATPase subunit; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein complement(3032112..3033164) Rubrobacter xylanophilus DSM 9941 4115961 YP_645748.1 CDS Rxyl_3026 NC_008148.1 3033161 3034165 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tth:TTC0972 dipeptide transport system permease protein dppB; binding-protein-dependent transport system inner membrane protein complement(3033161..3034165) Rubrobacter xylanophilus DSM 9941 4115962 YP_645749.1 CDS Rxyl_3027 NC_008148.1 3034169 3034960 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_00011 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; binding-protein-dependent transport systems inner membrane component complement(3034169..3034960) Rubrobacter xylanophilus DSM 9941 4115963 YP_645750.1 CDS Rxyl_3028 NC_008148.1 3035094 3036782 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: bld:BLi00894 putative oligopeptide ABC transporter (binding protein) (initiation of sporulation, competence development); RBL02204; twin-arginine translocation pathway signal protein complement(3035094..3036782) Rubrobacter xylanophilus DSM 9941 4115964 YP_645751.1 CDS Rxyl_3029 NC_008148.1 3036923 3038053 R PFAM: major facilitator superfamily MFS_1; KEGG: tfu:Tfu_2994 putative transport protein; major facilitator transporter complement(3036923..3038053) Rubrobacter xylanophilus DSM 9941 4115965 YP_645752.1 CDS Rxyl_3030 NC_008148.1 3038127 3038666 R PFAM: carbohydrate kinase, FGGY; KEGG: mta:Moth_2025 xylulokinase; carbohydrate kinase complement(3038127..3038666) Rubrobacter xylanophilus DSM 9941 4115966 YP_645753.1 CDS Rxyl_3032 NC_008148.1 3040211 3041257 D TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rru:Rru_A2511 putative diguanylate cyclase (GGDEF domain); twin-arginine translocation pathway signal protein 3040211..3041257 Rubrobacter xylanophilus DSM 9941 4115967 YP_645754.1 CDS Rxyl_3033 NC_008148.1 3041275 3042015 D PFAM: amidohydrolase 2; KEGG: pab:PAB0058 hypothetical protein; amidohydrolase 2 3041275..3042015 Rubrobacter xylanophilus DSM 9941 4115968 YP_645755.1 CDS Rxyl_3034 NC_008148.1 3042047 3042844 D PFAM: ABC transporter related; SMART: ATPase; KEGG: jan:Jann_3754 ABC transporter related; ABC transporter-like protein 3042047..3042844 Rubrobacter xylanophilus DSM 9941 4115969 YP_645756.1 CDS Rxyl_3035 NC_008148.1 3042841 3043611 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: jan:Jann_3753 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3042841..3043611 Rubrobacter xylanophilus DSM 9941 4115970 YP_645757.1 CDS Rxyl_3036 NC_008148.1 3043612 3044412 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: jan:Jann_3753 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3043612..3044412 Rubrobacter xylanophilus DSM 9941 4115971 YP_645758.1 CDS Rxyl_3037 NC_008148.1 3044409 3045908 D PFAM: amidohydrolase Amidohydrolase 3; KEGG: cya:CYA_1640 amidohydrolase family protein; amidohydrolase 3044409..3045908 Rubrobacter xylanophilus DSM 9941 4115972 YP_645759.1 CDS Rxyl_3038 NC_008148.1 3045921 3046715 D PFAM: Creatininase; KEGG: dar:Daro_0078 creatininase; creatininase 3045921..3046715 Rubrobacter xylanophilus DSM 9941 4115973 YP_645760.1 CDS Rxyl_3039 NC_008148.1 3046917 3047738 R PFAM: transposase, IS4; KEGG: sru:SRU_0356 IS982 family transposase; IS4 family transposase complement(3046917..3047738) Rubrobacter xylanophilus DSM 9941 4114840 YP_645761.1 CDS Rxyl_3040 NC_008148.1 3048173 3049180 R PFAM: transposase, IS4; IS4 family transposase complement(3048173..3049180) Rubrobacter xylanophilus DSM 9941 4114841 YP_645762.1 CDS Rxyl_3042 NC_008148.1 3050649 3051329 D PFAM: regulatory protein GntR, HTH GntR-like; KEGG: bld:BLi01972 hypothetical protein; GntR family transcriptional regulator 3050649..3051329 Rubrobacter xylanophilus DSM 9941 4114842 YP_645763.1 CDS Rxyl_3043 NC_008148.1 3051336 3052136 R PFAM: beta-lactamase-like; KEGG: tcx:Tcr_1803 beta-lactamase-like; beta-lactamase-like protein complement(3051336..3052136) Rubrobacter xylanophilus DSM 9941 4114843 YP_645764.1 CDS Rxyl_3044 NC_008148.1 3052133 3053308 R PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: eba:ebA5652 mandelate racemase/muconate lactonizing enzyme family protein; muconate cycloisomerase complement(3052133..3053308) Rubrobacter xylanophilus DSM 9941 4114844 YP_645765.1 CDS Rxyl_3045 NC_008148.1 3053314 3054627 R hypothetical protein complement(3053314..3054627) Rubrobacter xylanophilus DSM 9941 4114845 YP_645766.1 CDS Rxyl_3046 NC_008148.1 3054638 3055396 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gka:GK1683 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(3054638..3055396) Rubrobacter xylanophilus DSM 9941 4114846 YP_645767.1 CDS Rxyl_3047 NC_008148.1 3055393 3056181 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sco:SCO0256 short chain oxidoreductase; short-chain dehydrogenase/reductase SDR complement(3055393..3056181) Rubrobacter xylanophilus DSM 9941 4114847 YP_645768.1 CDS Rxyl_3048 NC_008148.1 3056178 3056417 R PFAM: biotin/lipoyl attachment; KEGG: sru:SRU_0811 2-oxo acid dehydrogenases acyltransferase (catalytic domain) protein; biotin/lipoyl attachment complement(3056178..3056417) Rubrobacter xylanophilus DSM 9941 4114848 YP_645769.1 CDS Rxyl_3049 NC_008148.1 3056437 3057429 R PFAM: Transketolase, central region Transketolase-like; KEGG: sso:SSO1526 pyruvate dehydrogenase E1 component, beta subunit; transketolase complement(3056437..3057429) Rubrobacter xylanophilus DSM 9941 4114849 YP_645770.1 CDS Rxyl_3050 NC_008148.1 3057426 3058424 R PFAM: dehydrogenase, E1 component; KEGG: tte:TTE0186 Thiamine pyrophosphate-dependent dehydrogenases, E1 component alpha subunit; pyruvate dehydrogenase complement(3057426..3058424) Rubrobacter xylanophilus DSM 9941 4114850 YP_645771.1 CDS Rxyl_3051 NC_008148.1 3058780 3059787 R PFAM: transposase, IS4; IS4 family transposase complement(3058780..3059787) Rubrobacter xylanophilus DSM 9941 4114851 YP_645772.1 CDS Rxyl_3052 NC_008148.1 3059844 3061223 D PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: bsu:BG12548 similar to purine-cytosine permease; cytosine/purines uracil thiamine allantoin permease 3059844..3061223 Rubrobacter xylanophilus DSM 9941 4114852 YP_645773.1 CDS Rxyl_3053 NC_008148.1 3061220 3062236 R PFAM: sodium/calcium exchanger membrane region; KEGG: chy:CHY_2431 putative Na+/Ca+ exchanger protein; sodium/calcium exchanger membrane region complement(3061220..3062236) Rubrobacter xylanophilus DSM 9941 4114853 YP_645774.1 CDS Rxyl_3054 NC_008148.1 3062326 3063087 D KEGG: mma:MM1616 phosphoribosylaminoimidazole carboxylase; phosphoribosylaminoimidazole carboxylase 3062326..3063087 Rubrobacter xylanophilus DSM 9941 4114854 YP_645775.1 CDS Rxyl_3055 NC_008148.1 3063087 3063629 D PFAM: 2',5' RNA ligase; KEGG: ade:Adeh_3960 2',5' RNA ligase; 2',5' RNA ligase 3063087..3063629 Rubrobacter xylanophilus DSM 9941 4114855 YP_645776.1 CDS Rxyl_3056 NC_008148.1 3063789 3064322 R hypothetical protein complement(3063789..3064322) Rubrobacter xylanophilus DSM 9941 4114856 YP_645777.1 CDS Rxyl_3057 NC_008148.1 3064524 3065390 D TIGRFAM: conserved hypothetical protein; PFAM: diacylglycerol kinase, catalytic region; KEGG: tth:TTC1957 protein BmrU; hypothetical protein 3064524..3065390 Rubrobacter xylanophilus DSM 9941 4114857 YP_645778.1 CDS Rxyl_3058 NC_008148.1 3065476 3066336 D PFAM: acyl transferase region; KEGG: tma:TM0798 malonyl CoA-acyl carrier protein transacylase; acyl transferase domain-containing protein 3065476..3066336 Rubrobacter xylanophilus DSM 9941 4114858 YP_645779.1 CDS Rxyl_3059 NC_008148.1 3066380 3067498 R PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: hch:HCH_01892 predicted NADH:ubiquinone oxidoreductase, subunit RnfC; respiratory-chain NADH dehydrogenase domain-containing protein complement(3066380..3067498) Rubrobacter xylanophilus DSM 9941 4114859 YP_645780.1 CDS Rxyl_3060 NC_008148.1 3067540 3068745 D PFAM: Lycopene beta and epsilon cyclase; KEGG: sma:SAV1021 lycopene cyclase; lycopene beta and epsilon cyclase 3067540..3068745 Rubrobacter xylanophilus DSM 9941 4114860 YP_645781.1 CDS Rxyl_3061 NC_008148.1 3068760 3069608 R KEGG: mth:MTH930 hypothetical protein; hypothetical protein complement(3068760..3069608) Rubrobacter xylanophilus DSM 9941 4114861 YP_645782.1 CDS Rxyl_3062 NC_008148.1 3069721 3070884 R PFAM: FAD linked oxidase-like; KEGG: chy:CHY_2037 cysteine-rich domain protein/FAD binding domain protein; FAD linked oxidase-like protein complement(3069721..3070884) Rubrobacter xylanophilus DSM 9941 4114862 YP_645783.1 CDS Rxyl_3063 NC_008148.1 3070900 3071793 R PFAM: UspA; KEGG: mma:MM1452 universal stress protein; hypothetical protein complement(3070900..3071793) Rubrobacter xylanophilus DSM 9941 4114863 YP_645784.1 CDS Rxyl_3064 NC_008148.1 3071967 3072713 D PFAM: zinc/iron permease; KEGG: ttj:TTHA1706 putative divalent heavy-metal cation transporter; zinc/iron permease 3071967..3072713 Rubrobacter xylanophilus DSM 9941 4114864 YP_645785.1 CDS Rxyl_3065 NC_008148.1 3072732 3073688 R PFAM: Mg2+ transporter protein, CorA-like; KEGG: sma:SAV2036 putative metal-transport protein; CorA-like Mg2+ transporter protein complement(3072732..3073688) Rubrobacter xylanophilus DSM 9941 4114865 YP_645786.1 CDS Rxyl_3066 NC_008148.1 3073711 3074538 R PFAM: FAD linked oxidase-like; KEGG: chy:CHY_2037 cysteine-rich domain protein/FAD binding domain protein; FAD linked oxidase-like protein complement(3073711..3074538) Rubrobacter xylanophilus DSM 9941 4114866 YP_645787.1 CDS Rxyl_3067 NC_008148.1 3074565 3075107 D KEGG: sma:SAV1204 putative IS630 family transposase; IS630 family transposase 3074565..3075107 Rubrobacter xylanophilus DSM 9941 4114867 YP_645788.1 CDS Rxyl_3068 NC_008148.1 3075107 3075703 D hypothetical protein 3075107..3075703 Rubrobacter xylanophilus DSM 9941 4114868 YP_645789.1 CDS Rxyl_3069 NC_008148.1 3076122 3076712 R PFAM: DoxX; KEGG: sth:STH2407 hypothetical protein; DoxX protein complement(3076122..3076712) Rubrobacter xylanophilus DSM 9941 4114869 YP_645790.1 CDS Rxyl_3070 NC_008148.1 3076847 3077749 R PFAM: UspA; KEGG: mma:MM1452 universal stress protein; hypothetical protein complement(3076847..3077749) Rubrobacter xylanophilus DSM 9941 4114870 YP_645791.1 CDS Rxyl_3071 NC_008148.1 3077788 3078741 R PFAM: UspA; KEGG: tfu:Tfu_1412 hypothetical protein; hypothetical protein complement(3077788..3078741) Rubrobacter xylanophilus DSM 9941 4114871 YP_645792.1 CDS Rxyl_3072 NC_008148.1 3078713 3079198 R PFAM: UspA; KEGG: ade:Adeh_1331 universal stress protein UspA; hypothetical protein complement(3078713..3079198) Rubrobacter xylanophilus DSM 9941 4114872 YP_645793.1 CDS Rxyl_3073 NC_008148.1 3079199 3081619 R catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase complement(3079199..3081619) Rubrobacter xylanophilus DSM 9941 4114873 YP_645794.1 CDS Rxyl_3074 NC_008148.1 3081665 3082099 R PFAM: heat shock protein Hsp20; KEGG: ade:Adeh_4352 heat shock protein HSP20; heat shock protein Hsp20 complement(3081665..3082099) Rubrobacter xylanophilus DSM 9941 4114874 YP_645795.1 CDS Rxyl_3075 NC_008148.1 3082137 3083180 R PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: sco:SCO0179 putative zinc-containing dehydrogenase; alcohol dehydrogenase GroES-like protein complement(3082137..3083180) Rubrobacter xylanophilus DSM 9941 4114875 YP_645796.1 CDS Rxyl_3076 NC_008148.1 3083420 3086173 R TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: cation transporting ATPase-like Haloacid dehalogenase-like hydrolase E1-E2 ATPase-associated region; KEGG: mth:MTH1516 cation-transporting P-ATPase PacL; P type K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter ATPase complement(3083420..3086173) Rubrobacter xylanophilus DSM 9941 4114876 YP_645797.1 CDS Rxyl_3077 NC_008148.1 3086237 3088741 R TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: Haloacid dehalogenase-like hydrolase cation transporting ATPase-like E1-E2 ATPase-associated region; KEGG: mma:MM1461 cation-transporting ATPase; P type K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter ATPase complement(3086237..3088741) Rubrobacter xylanophilus DSM 9941 4114877 YP_645798.1 CDS Rxyl_3078 NC_008148.1 3089069 3089365 R KEGG: ade:Adeh_1661 hypothetical protein; hypothetical protein complement(3089069..3089365) Rubrobacter xylanophilus DSM 9941 4114878 YP_645799.1 CDS Rxyl_3079 NC_008148.1 3089502 3089990 R PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: ade:Adeh_3818 FMN-binding pyridoxamine 5'-phosphate oxidase-related protein; pyridoxamine 5'-phosphate oxidase-like protein complement(3089502..3089990) Rubrobacter xylanophilus DSM 9941 4114879 YP_645800.1 CDS Rxyl_3081 NC_008148.1 3090241 3090633 R KEGG: hma:pNG6026 hypothetical protein; hypothetical protein complement(3090241..3090633) Rubrobacter xylanophilus DSM 9941 4114880 YP_645801.1 CDS Rxyl_3082 NC_008148.1 3090821 3092245 R PFAM: glycosyl transferase, group 1; KEGG: pho:PH1035 hypothetical protein; group 1 glycosyl transferase complement(3090821..3092245) Rubrobacter xylanophilus DSM 9941 4114881 YP_645802.1 CDS Rxyl_3083 NC_008148.1 3092261 3092839 R PFAM: GCN5-related N-acetyltransferase; KEGG: tfu:Tfu_2128 hypothetical protein; N-acetyltransferase GCN5 complement(3092261..3092839) Rubrobacter xylanophilus DSM 9941 4114882 YP_645803.1 CDS Rxyl_3084 NC_008148.1 3092885 3093262 R hypothetical protein complement(3092885..3093262) Rubrobacter xylanophilus DSM 9941 4114883 YP_645804.1 CDS Rxyl_3085 NC_008148.1 3093295 3094206 R PFAM: UspA; KEGG: mma:MM1452 universal stress protein; hypothetical protein complement(3093295..3094206) Rubrobacter xylanophilus DSM 9941 4114884 YP_645805.1 CDS Rxyl_3086 NC_008148.1 3094328 3095008 R TIGRFAM: PAS; PFAM: regulatory protein, LuxR Bacterio-opsin activator, HTH; KEGG: ttj:TTHA1030 response regulator; LuxR family transcriptional regulator complement(3094328..3095008) Rubrobacter xylanophilus DSM 9941 4114885 YP_645806.1 CDS Rxyl_3087 NC_008148.1 3095162 3097420 D PFAM: FAD linked oxidase-like luciferase-like; KEGG: tfu:Tfu_3031 similar to coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductase; FAD linked oxidase-like protein 3095162..3097420 Rubrobacter xylanophilus DSM 9941 4114886 YP_645807.1 CDS Rxyl_3088 NC_008148.1 3097417 3098316 D PFAM: luciferase-like; KEGG: tfu:Tfu_3031 similar to coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductase; luciferase-like protein 3097417..3098316 Rubrobacter xylanophilus DSM 9941 4114887 YP_645808.1 CDS Rxyl_3089 NC_008148.1 3098349 3099368 D PFAM: luciferase-like; KEGG: sth:STH1269 bacterial luciferase-like monooxygenase; luciferase-like protein 3098349..3099368 Rubrobacter xylanophilus DSM 9941 4114888 YP_645809.1 CDS Rxyl_3090 NC_008148.1 3099621 3101579 R PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: gme:Gmet_1338 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD complement(3099621..3101579) Rubrobacter xylanophilus DSM 9941 4114889 YP_645810.1 CDS Rxyl_3091 NC_008148.1 3101625 3102608 R PFAM: glycosyl transferase, family 4; KEGG: rru:Rru_A3657 glycosyl transferase, family 4; glycosyl transferase family protein complement(3101625..3102608) Rubrobacter xylanophilus DSM 9941 4114890 YP_645811.1 CDS Rxyl_3092 NC_008148.1 3102605 3103483 R PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase dTDP-4-dehydrorhamnose reductase NmrA-like Male sterility-like; KEGG: fra:Francci3_1303 methyltransferase FkbM; NmrA-like protein complement(3102605..3103483) Rubrobacter xylanophilus DSM 9941 4114891 YP_645812.1 CDS Rxyl_3093 NC_008148.1 3103500 3103934 R hypothetical protein complement(3103500..3103934) Rubrobacter xylanophilus DSM 9941 4114892 YP_645813.1 CDS Rxyl_3094 NC_008148.1 3104083 3104946 D hypothetical protein 3104083..3104946 Rubrobacter xylanophilus DSM 9941 4114893 YP_645814.1 CDS Rxyl_3095 NC_008148.1 3104943 3105803 D PFAM: glycosyl transferase, family 2; KEGG: mlo:mll7088 similar to lipopolysaccharide core biosynthesis glycosyl transferase lpsC; glycosyl transferase family protein 3104943..3105803 Rubrobacter xylanophilus DSM 9941 4114894 YP_645815.1 CDS Rxyl_3096 NC_008148.1 3105927 3106934 D hypothetical protein 3105927..3106934 Rubrobacter xylanophilus DSM 9941 4114895 YP_645816.1 CDS Rxyl_3097 NC_008148.1 3106994 3108070 D KEGG: lpl:lp_1377 hypothetical protein; hypothetical protein 3106994..3108070 Rubrobacter xylanophilus DSM 9941 4114896 YP_645817.1 CDS Rxyl_3098 NC_008148.1 3108096 3109022 D hypothetical protein 3108096..3109022 Rubrobacter xylanophilus DSM 9941 4114897 YP_645818.1 CDS Rxyl_3099 NC_008148.1 3109041 3109640 D KEGG: jan:Jann_1985 hypothetical protein; hypothetical protein 3109041..3109640 Rubrobacter xylanophilus DSM 9941 4114898 YP_645819.1 CDS Rxyl_3100 NC_008148.1 3109645 3110403 R PFAM: sulfotransferase; KEGG: syw:SYNW0083 putative deacetylase sulfotransferase; sulfotransferase complement(3109645..3110403) Rubrobacter xylanophilus DSM 9941 4114899 YP_645820.1 CDS Rxyl_3101 NC_008148.1 3110510 3111457 R hypothetical protein complement(3110510..3111457) Rubrobacter xylanophilus DSM 9941 4114900 YP_645821.1 CDS Rxyl_3102 NC_008148.1 3111459 3111854 R hypothetical protein complement(3111459..3111854) Rubrobacter xylanophilus DSM 9941 4114901 YP_645822.1 CDS Rxyl_3103 NC_008148.1 3111841 3112647 R KEGG: bha:BH3369 hypothetical protein; hypothetical protein complement(3111841..3112647) Rubrobacter xylanophilus DSM 9941 4114902 YP_645823.1 CDS Rxyl_3104 NC_008148.1 3112676 3113782 R PFAM: sulfotransferase; KEGG: ddi:DDB0167934 hypothetical protein; sulfotransferase complement(3112676..3113782) Rubrobacter xylanophilus DSM 9941 4114903 YP_645824.1 CDS Rxyl_3105 NC_008148.1 3113827 3114993 R PFAM: sulfotransferase; KEGG: ddi:DDB0167934 hypothetical protein; sulfotransferase complement(3113827..3114993) Rubrobacter xylanophilus DSM 9941 4114904 YP_645825.1 CDS Rxyl_3106 NC_008148.1 3115023 3115859 R PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: mth:MTH1792 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(3115023..3115859) Rubrobacter xylanophilus DSM 9941 4114905 YP_645826.1 CDS Rxyl_3107 NC_008148.1 3115869 3117227 R PFAM: glycosyl transferase, group 1; KEGG: nmu:Nmul_A2400 glycosyl transferase, group 1; group 1 glycosyl transferase complement(3115869..3117227) Rubrobacter xylanophilus DSM 9941 4114906 YP_645827.1 CDS Rxyl_3108 NC_008148.1 3117224 3118336 R PFAM: sulfotransferase; KEGG: ddi:DDB0167934 hypothetical protein; sulfotransferase complement(3117224..3118336) Rubrobacter xylanophilus DSM 9941 4114907 YP_645828.1 CDS Rxyl_3109 NC_008148.1 3118356 3119339 R PFAM: glycosyl transferase, family 2; KEGG: mma:MM2217 hypothetical protein; glycosyl transferase family protein complement(3118356..3119339) Rubrobacter xylanophilus DSM 9941 4114908 YP_645829.1 CDS Rxyl_3110 NC_008148.1 3119336 3120814 R PFAM: sulfatase; KEGG: gvi:gll3431 probable sulfatase; sulfatase complement(3119336..3120814) Rubrobacter xylanophilus DSM 9941 4114909 YP_645830.1 CDS Rxyl_3111 NC_008148.1 3120811 3121800 R PFAM: sulfotransferase; KEGG: rru:Rru_A0854 sulfotransferase; sulfotransferase complement(3120811..3121800) Rubrobacter xylanophilus DSM 9941 4114910 YP_645831.1 CDS Rxyl_3112 NC_008148.1 3121911 3123401 D PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: sth:STH1068 putative amidase; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 3121911..3123401 Rubrobacter xylanophilus DSM 9941 4114911 YP_645832.1 CDS Rxyl_3113 NC_008148.1 3123408 3124328 R PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: ade:Adeh_1954 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(3123408..3124328) Rubrobacter xylanophilus DSM 9941 4114912 YP_645833.1 CDS Rxyl_3114 NC_008148.1 3124325 3125293 R PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: sru:SRU_0597 UDP-glucuronate decarboxylase; NAD-dependent epimerase/dehydratase complement(3124325..3125293) Rubrobacter xylanophilus DSM 9941 4114913 YP_645834.1 CDS Rxyl_3115 NC_008148.1 3125286 3126665 R PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: gvi:gll0969 UDP-glucose dehydrogenase; UDP-glucose 6-dehydrogenase complement(3125286..3126665) Rubrobacter xylanophilus DSM 9941 4114914 YP_645835.1 CDS Rxyl_3116 NC_008148.1 3126899 3127717 D PFAM: ABC-2 type transporter; KEGG: nmu:Nmul_A2397 ABC-2; ABC transporter 3126899..3127717 Rubrobacter xylanophilus DSM 9941 4114915 YP_645836.1 CDS Rxyl_3117 NC_008148.1 3127714 3129024 D PFAM: ABC transporter related; SMART: ATPase; KEGG: pfo:Pfl_4048 ABC transporter-like; ABC transporter-like protein 3127714..3129024 Rubrobacter xylanophilus DSM 9941 4114916 YP_645837.1 CDS Rxyl_3118 NC_008148.1 3129029 3130033 D PFAM: glycosyl transferase, family 2; KEGG: gme:Gmet_2879 glycosyl transferase, family 2; glycosyl transferase family protein 3129029..3130033 Rubrobacter xylanophilus DSM 9941 4114917 YP_645838.1 CDS Rxyl_3119 NC_008148.1 3130043 3130891 D PFAM: glycosyl transferase, family 2; KEGG: mca:MCA1435 glycosyl transferase, group 2 family; glycosyl transferase family protein 3130043..3130891 Rubrobacter xylanophilus DSM 9941 4114918 YP_645839.1 CDS Rxyl_3120 NC_008148.1 3130888 3131439 R KEGG: mca:MCA1284 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(3130888..3131439) Rubrobacter xylanophilus DSM 9941 4114919 YP_645840.1 CDS Rxyl_3121 NC_008148.1 3131436 3132317 R TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pae:PA5163 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase complement(3131436..3132317) Rubrobacter xylanophilus DSM 9941 4114920 YP_645841.1 CDS Rxyl_3122 NC_008148.1 3132314 3133408 R TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: mca:MCA1282 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase complement(3132314..3133408) Rubrobacter xylanophilus DSM 9941 4114921 YP_645842.1 CDS Rxyl_3123 NC_008148.1 3133656 3134723 D TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: ttj:TTHA0491 threonine synthase; L-threonine synthase 3133656..3134723 Rubrobacter xylanophilus DSM 9941 4114922 YP_645843.1 CDS Rxyl_3124 NC_008148.1 3134720 3135652 D TIGRFAM: homoserine kinase; PFAM: GHMP kinase GHMP kinase, C terminal; KEGG: mta:Moth_1305 homoserine kinase; homoserine kinase 3134720..3135652 Rubrobacter xylanophilus DSM 9941 4114923 YP_645844.1 CDS Rxyl_3125 NC_008148.1 3136156 3137850 D TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: det:DET0833 acetolactate synthase, large subunit, biosynthetic type; acetolactate synthase large subunit 3136156..3137850 Rubrobacter xylanophilus DSM 9941 4114924 YP_645845.1 CDS Rxyl_3126 NC_008148.1 3137843 3138298 D hypothetical protein 3137843..3138298 Rubrobacter xylanophilus DSM 9941 4114925 YP_645846.1 CDS Rxyl_3127 NC_008148.1 3138303 3139328 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 3138303..3139328 Rubrobacter xylanophilus DSM 9941 4114926 YP_645847.1 CDS Rxyl_3128 NC_008148.1 3139325 3140281 D TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase, class IV; KEGG: deh:cbdb_A11 branched-chain amino acid aminotransferase; branched chain amino acid aminotransferase 3139325..3140281 Rubrobacter xylanophilus DSM 9941 4114927 YP_645848.1 CDS Rxyl_3129 NC_008148.1 3140514 3142046 D TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase LeuA allosteric (dimerisation) domain; KEGG: mta:Moth_2255 2-isopropylmalate synthase; 2-isopropylmalate synthase 3140514..3142046 Rubrobacter xylanophilus DSM 9941 4114928 YP_645849.1 CDS Rxyl_3130 NC_008148.1 3142169 3143236 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 3142169..3143236 Rubrobacter xylanophilus DSM 9941 4114929 YP_645850.1 CDS Rxyl_3131 NC_008148.1 3143233 3144795 D TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase; PFAM: pyruvate carboxyltransferase LeuA allosteric (dimerisation) domain; KEGG: pab:PAB0894 2-isopropylmalate synthase; putative alpha-isopropylmalate/homocitrate synthase family transferase 3143233..3144795 Rubrobacter xylanophilus DSM 9941 4114930 YP_645851.1 CDS Rxyl_3132 NC_008148.1 3144800 3145492 R PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mta:Moth_1595 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(3144800..3145492) Rubrobacter xylanophilus DSM 9941 4114931 YP_645852.1 CDS Rxyl_3133 NC_008148.1 3145497 3147071 R catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase complement(3145497..3147071) Rubrobacter xylanophilus DSM 9941 4114932 YP_645853.1 CDS Rxyl_3134 NC_008148.1 3147273 3148208 D PFAM: Uncharacterized protein UPF0065; KEGG: rsp:RSP_1420 TRAP-T family transporter, periplasmic binding protein; hypothetical protein 3147273..3148208 Rubrobacter xylanophilus DSM 9941 4114933 YP_645854.1 CDS Rxyl_3135 NC_008148.1 3148218 3148739 D KEGG: reu:Reut_A3430 conserved hypothetical membrane protein; hypothetical protein 3148218..3148739 Rubrobacter xylanophilus DSM 9941 4114934 YP_645855.1 CDS Rxyl_3136 NC_008148.1 3148744 3150282 D PFAM: protein of unknown function DUF112, transmembrane; KEGG: bja:blr3163 hypothetical protein; hypothetical protein 3148744..3150282 Rubrobacter xylanophilus DSM 9941 4114935 YP_645856.1 CDS Rxyl_3137 NC_008148.1 3150292 3151698 R hypothetical protein complement(3150292..3151698) Rubrobacter xylanophilus DSM 9941 4114936 YP_645857.1 CDS Rxyl_3138 NC_008148.1 3151836 3152903 R PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; KEGG: ppu:PP0099 hypothetical protein; radical SAM family protein complement(3151836..3152903) Rubrobacter xylanophilus DSM 9941 4114937 YP_645858.1 CDS Rxyl_3139 NC_008148.1 3153031 3153759 D KEGG: ctc:CTC01348 membrane spanning protein; membrane spanning protein 3153031..3153759 Rubrobacter xylanophilus DSM 9941 4114938 YP_645859.1 CDS Rxyl_3140 NC_008148.1 3153764 3154084 D KEGG: chy:CHY_1194 PII family protein; nitrogen regulatory protein P-II 3153764..3154084 Rubrobacter xylanophilus DSM 9941 4114939 YP_645860.1 CDS Rxyl_3141 NC_008148.1 3154107 3155000 R PFAM: UspA; KEGG: mma:MM1452 universal stress protein; hypothetical protein complement(3154107..3155000) Rubrobacter xylanophilus DSM 9941 4114940 YP_645861.1 CDS Rxyl_3142 NC_008148.1 3155073 3155420 R PFAM: Na+/H+ antiporter subunit; KEGG: mac:MA4566 multiple resistance/pH regulation related protein G (Na+/H+ antiporter); Na+/H+ antiporter subunit complement(3155073..3155420) Rubrobacter xylanophilus DSM 9941 4114941 YP_645862.1 CDS Rxyl_3143 NC_008148.1 3155420 3155686 R PFAM: multiple resistance and pH regulation protein F; KEGG: tcx:Tcr_0059 multiple resistance and pH regulation protein F; membrane bound protein complex subunit mbxB complement(3155420..3155686) Rubrobacter xylanophilus DSM 9941 4114942 YP_645863.1 CDS Rxyl_3144 NC_008148.1 3155708 3156199 R PFAM: cation antiporter; KEGG: sme:SMc00055 putative cation efflux system protein; cation antiporter complement(3155708..3156199) Rubrobacter xylanophilus DSM 9941 4114943 YP_645864.1 CDS Rxyl_3145 NC_008148.1 3156196 3157584 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: bha:BH1316 Na+/H+ antiporter; NADH dehydrogenase (quinone) complement(3156196..3157584) Rubrobacter xylanophilus DSM 9941 4114944 YP_645865.1 CDS Rxyl_3146 NC_008148.1 3157581 3157973 R PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: bha:BH1317 Na+/H+ antiporter; NADH-ubiquinone oxidoreductase subunit 4L complement(3157581..3157973) Rubrobacter xylanophilus DSM 9941 4114945 YP_645866.1 CDS Rxyl_3147 NC_008148.1 3157970 3158422 R PFAM: Na+/H+ antiporter MnhB subunit-related protein; KEGG: nfa:nfa52900 putative cation antiporter NADH dehydrogenase subunit; Na+/H+ antiporter MnhB subunit-like protein complement(3157970..3158422) Rubrobacter xylanophilus DSM 9941 4114946 YP_645867.1 CDS Rxyl_3148 NC_008148.1 3158419 3160701 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: tbd:Tbd_0497 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) complement(3158419..3160701) Rubrobacter xylanophilus DSM 9941 4114947 YP_645868.1 CDS Rxyl_3149 NC_008148.1 3160812 3163073 R PFAM: glycosyl transferase, family 2 Methyltransferase type 11 Methyltransferase type 12; KEGG: nfa:nfa22310 putative glycosyltransferase; glycosyl transferase family protein complement(3160812..3163073) Rubrobacter xylanophilus DSM 9941 4114948 YP_645869.1 CDS Rxyl_3150 NC_008148.1 3163060 3163818 R PFAM: Creatininase; KEGG: nfa:nfa32090 hypothetical protein; creatininase complement(3163060..3163818) Rubrobacter xylanophilus DSM 9941 4114949 YP_645870.1 CDS Rxyl_3151 NC_008148.1 3163808 3165010 R PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: mpa:MAP4154 L-Lactate dehydrogenase (cytochrome); (S)-2-hydroxy-acid oxidase complement(3163808..3165010) Rubrobacter xylanophilus DSM 9941 4114950 YP_645871.1 CDS Rxyl_3152 NC_008148.1 3165019 3166881 R PFAM: ATPase associated with various cellular activities, AAA_3 ATPase associated with various cellular activities, AAA_5; SMART: von Willebrand factor, type A ATPase; KEGG: nfa:nfa11980 hypothetical protein; ATPase complement(3165019..3166881) Rubrobacter xylanophilus DSM 9941 4114951 YP_645872.1 CDS Rxyl_3153 NC_008148.1 3166892 3168019 R PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: nfa:nfa11970 putative dehydrogenase; zinc-binding alcohol dehydrogenase complement(3166892..3168019) Rubrobacter xylanophilus DSM 9941 4114952 YP_645873.1 CDS Rxyl_3154 NC_008148.1 3168037 3169140 R PFAM: Radical SAM; KEGG: nfa:nfa34430 hypothetical protein; radical SAM family protein complement(3168037..3169140) Rubrobacter xylanophilus DSM 9941 4114953 YP_645874.1 CDS Rxyl_3155 NC_008148.1 3169130 3169408 R hypothetical protein complement(3169130..3169408) Rubrobacter xylanophilus DSM 9941 4114954 YP_645875.1 CDS Rxyl_3156 NC_008148.1 3169446 3170300 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mpa:MAP1451 hypothetical protein; short-chain dehydrogenase/reductase SDR complement(3169446..3170300) Rubrobacter xylanophilus DSM 9941 4114955 YP_645876.1 CDS Rxyl_3157 NC_008148.1 3170564 3171364 R PFAM: DNA methylase N-4/N-6; KEGG: ade:Adeh_2855 DNA methylase N-4/N-6; DNA methylase N-4/N-6 complement(3170564..3171364) Rubrobacter xylanophilus DSM 9941 4114956 YP_645877.1 CDS Rxyl_3158 NC_008148.1 3171379 3172902 R PFAM: Na+/solute symporter; KEGG: sru:SRU_1998 pantothenate permease; Na+/solute symporter complement(3171379..3172902) Rubrobacter xylanophilus DSM 9941 4114957 YP_645878.1 CDS Rxyl_3159 NC_008148.1 3172899 3173147 R hypothetical protein complement(3172899..3173147) Rubrobacter xylanophilus DSM 9941 4114958 YP_645879.1 CDS Rxyl_3160 NC_008148.1 3173245 3173787 R PFAM: thioesterase superfamily; KEGG: hma:rrnAC2032 thioesterase of unknown specificity; thioesterase superfamily protein complement(3173245..3173787) Rubrobacter xylanophilus DSM 9941 4114959 YP_645880.1 CDS Rxyl_3161 NC_008148.1 3173805 3175139 D PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mhu:Mhun_2406 tetratricopeptide TPR_2; hypothetical protein 3173805..3175139 Rubrobacter xylanophilus DSM 9941 4114960 YP_645881.1 CDS Rxyl_3163 NC_008148.1 3175377 3175982 R KEGG: tko:TK0480 metal-dependent phosphohydrolase, HD superfamily; TIGRFAM: uncharacterized domain HDIG; PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase complement(3175377..3175982) Rubrobacter xylanophilus DSM 9941 4114961 YP_645882.1 CDS Rxyl_3164 NC_008148.1 3176021 3176950 R PFAM: periplasmic binding protein; KEGG: eli:ELI_10795 probable periplasmic substrate-binding protein; periplasmic binding protein complement(3176021..3176950) Rubrobacter xylanophilus DSM 9941 4114962 YP_645883.1 CDS Rxyl_3165 NC_008148.1 3176950 3178080 R PFAM: CBS peptidase M50; KEGG: sil:SPO1636 SREBP protease/CBS domain; peptidase M50 complement(3176950..3178080) Rubrobacter xylanophilus DSM 9941 4114963 YP_645884.1 CDS Rxyl_3166 NC_008148.1 3178140 3179888 D PFAM: DNA-directed DNA polymerase 3'-5' exonuclease; KEGG: tpv:TP01_0386 hypothetical protein; DNA-directed DNA polymerase 3178140..3179888 Rubrobacter xylanophilus DSM 9941 4114964 YP_645885.1 CDS Rxyl_3167 NC_008148.1 3179893 3180345 D PFAM: GCN5-related N-acetyltransferase; KEGG: bur:Bcep18194_C6642 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3179893..3180345 Rubrobacter xylanophilus DSM 9941 4114965 YP_645886.1 CDS Rxyl_3168 NC_008148.1 3180339 3181211 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: dra:DR1295 PecM-related protein; hypothetical protein complement(3180339..3181211) Rubrobacter xylanophilus DSM 9941 4114966 YP_645887.1 CDS Rxyl_3169 NC_008148.1 3181287 3182879 R PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: rpb:RPB_0810 alpha amylase; alpha amylase complement(3181287..3182879) Rubrobacter xylanophilus DSM 9941 4114967 YP_645888.1 CDS Rxyl_3170 NC_008148.1 3182920 3184071 R PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_0828 major facilitator superfamily (MFS) transporter; major facilitator transporter complement(3182920..3184071) Rubrobacter xylanophilus DSM 9941 4114968 YP_645889.1 CDS Rxyl_3171 NC_008148.1 3184157 3185293 R KEGG: nfa:nfa53760 hypothetical protein; hypothetical protein complement(3184157..3185293) Rubrobacter xylanophilus DSM 9941 4114969 YP_645890.1 CDS Rxyl_3172 NC_008148.1 3185445 3185690 D hypothetical protein 3185445..3185690 Rubrobacter xylanophilus DSM 9941 4114970 YP_645891.1 CDS Rxyl_3173 NC_008148.1 3185687 3186247 R hypothetical protein complement(3185687..3186247) Rubrobacter xylanophilus DSM 9941 4114971 YP_645892.1 CDS Rxyl_3174 NC_008148.1 3186244 3186702 R hypothetical protein complement(3186244..3186702) Rubrobacter xylanophilus DSM 9941 4114972 YP_645893.1 CDS Rxyl_3175 NC_008148.1 3186764 3188161 R PFAM: aldehyde dehydrogenase; KEGG: ade:Adeh_3025 aldehyde dehydrogenase; succinate-semialdehyde dehydrogenase (NAD(P)+) complement(3186764..3188161) Rubrobacter xylanophilus DSM 9941 4114973 YP_645894.1 CDS Rxyl_3176 NC_008148.1 3188261 3189403 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding Domain of unknown function DUF1730; KEGG: xcv:XCV2606 putative iron-sulfur cluster-binding protein; hypothetical protein 3188261..3189403 Rubrobacter xylanophilus DSM 9941 4114974 YP_645895.1 CDS Rxyl_3177 NC_008148.1 3189418 3190203 D PFAM: heat shock protein DnaJ-like; KEGG: cya:CYA_2055 DnaJ family protein; heat shock protein DnaJ-like protein 3189418..3190203 Rubrobacter xylanophilus DSM 9941 4114975 YP_645896.1 CDS Rxyl_3178 NC_008148.1 3190252 3191838 D PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: bha:BH0371 hypothetical protein; peptidase M3A and M3B, thimet/oligopeptidase F 3190252..3191838 Rubrobacter xylanophilus DSM 9941 4114976 YP_645897.1 CDS Rxyl_3180 NC_008148.1 3192327 3193232 R PFAM: GCN5-related N-acetyltransferase; KEGG: gme:Gmet_0682 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3192327..3193232) Rubrobacter xylanophilus DSM 9941 4114977 YP_645898.1 CDS Rxyl_3181 NC_008148.1 3193435 3194403 R PFAM: aldo/keto reductase; KEGG: gka:GK1975 K+ channel beta subunit; aldo/keto reductase complement(3193435..3194403) Rubrobacter xylanophilus DSM 9941 4114978 YP_645899.1 CDS Rxyl_3182 NC_008148.1 3194580 3195230 D modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 3194580..3195230 Rubrobacter xylanophilus DSM 9941 4114979 YP_645900.1 CDS Rxyl_3183 NC_008148.1 3195659 3196039 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(3195659..3196039) Rubrobacter xylanophilus DSM 9941 4114980 YP_645901.1 CDS Rxyl_3184 NC_008148.1 3196032 3197150 R KEGG: ade:Adeh_1245 glycine cleavage system T protein; TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); aminomethyltransferase complement(3196032..3197150) Rubrobacter xylanophilus DSM 9941 4114981 YP_645902.1 CDS Rxyl_3185 NC_008148.1 3197144 3198559 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 complement(3197144..3198559) Rubrobacter xylanophilus DSM 9941 4114982 YP_645903.1 CDS Rxyl_3186 NC_008148.1 3198549 3199838 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 complement(3198549..3199838) Rubrobacter xylanophilus DSM 9941 4114983 YP_645904.1 CDS Rxyl_3187 NC_008148.1 3200264 3200464 D hypothetical protein 3200264..3200464 Rubrobacter xylanophilus DSM 9941 4114984 YP_645905.1 CDS Rxyl_3188 NC_008148.1 3200505 3201611 R PFAM: regulatory protein, LuxR; KEGG: ade:Adeh_2191 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(3200505..3201611) Rubrobacter xylanophilus DSM 9941 4114985 YP_645906.1 CDS Rxyl_3189 NC_008148.1 3201705 3202277 D PFAM: Cupin 2, conserved barrel; KEGG: ret:RHE_PF00016 hypothetical protein; cupin 2 barrel domain-containing protein 3201705..3202277 Rubrobacter xylanophilus DSM 9941 4114986 YP_645907.1 CDS Rxyl_3190 NC_008148.1 3202639 3203247 R PFAM: regulatory protein, TetR; KEGG: nar:Saro_0992 putative transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3202639..3203247) Rubrobacter xylanophilus DSM 9941 4114987 YP_645908.1 CDS Rxyl_3191 NC_008148.1 3203380 3203919 D PFAM: Cupin 2, conserved barrel; KEGG: sco:SCO4483 hypothetical protein; cupin 2 barrel domain-containing protein 3203380..3203919 Rubrobacter xylanophilus DSM 9941 4114988 YP_645909.1 CDS Rxyl_3192 NC_008148.1 3204088 3205059 R PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: noc:Noc_2604 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; cysteine synthase complement(3204088..3205059) Rubrobacter xylanophilus DSM 9941 4114989 YP_645910.1 CDS Rxyl_3193 NC_008148.1 3205072 3205839 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sco:SCO1611 putative dehydrogenase; short chain dehydrogenase complement(3205072..3205839) Rubrobacter xylanophilus DSM 9941 4114990 YP_645911.1 CDS Rxyl_3194 NC_008148.1 3205842 3207203 R PFAM: aldehyde dehydrogenase; KEGG: mpa:MAP2929c aldehyde dehydrogenase family protein; betaine-aldehyde dehydrogenase complement(3205842..3207203) Rubrobacter xylanophilus DSM 9941 4114991 YP_645912.1 CDS Rxyl_3195 NC_008148.1 3207187 3207912 R PFAM: glutamine amidotransferase class-I peptidase C26; KEGG: mpa:MAP2930c hypothetical protein; peptidase C26 complement(3207187..3207912) Rubrobacter xylanophilus DSM 9941 4114992 YP_645913.1 CDS Rxyl_3196 NC_008148.1 3207909 3209276 R PFAM: glutamine synthetase, catalytic region; KEGG: sco:SCO1613 putative glutamine synthetase; L-glutamine synthetase complement(3207909..3209276) Rubrobacter xylanophilus DSM 9941 4114993 YP_645914.1 CDS Rxyl_3197 NC_008148.1 3209297 3210739 R TIGRFAM: Ethanolamine permease; PFAM: amino acid permease-associated region; KEGG: ppu:PP0544 ethanolamine transporter; ethanolamine permease complement(3209297..3210739) Rubrobacter xylanophilus DSM 9941 4114994 YP_645915.1 CDS Rxyl_3198 NC_008148.1 3210927 3211712 D PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: tte:TTE0461 Transcriptional regulator; GntR family transcriptional regulator 3210927..3211712 Rubrobacter xylanophilus DSM 9941 4114995 YP_645916.1 CDS Rxyl_3199 NC_008148.1 3211738 3212076 D TIGRFAM: Secretion chaperone CsaA; PFAM: t-RNA-binding region; KEGG: rsp:RSP_3365 protein secretion chaperonine; secretion chaperone CsaA 3211738..3212076 Rubrobacter xylanophilus DSM 9941 4114996 YP_645917.1 CDS Rxyl_3200 NC_008148.1 3212141 3212851 D PFAM: protein of unknown function DUF124; KEGG: tfu:Tfu_0236 hypothetical protein; hypothetical protein 3212141..3212851 Rubrobacter xylanophilus DSM 9941 4114997 YP_645918.1 CDS Rxyl_3201 NC_008148.1 3212929 3213891 D PFAM: luciferase-like; KEGG: sco:SCO7290 dehydrogenase; luciferase-like protein 3212929..3213891 Rubrobacter xylanophilus DSM 9941 4114998 YP_645919.1 CDS Rxyl_3202 NC_008148.1 3213896 3216349 R TIGRFAM: leucyl-tRNA synthetase; KEGG: det:DET0194 leucyl-tRNA synthetase; leucyl-tRNA synthetase complement(3213896..3216349) Rubrobacter xylanophilus DSM 9941 4114999 YP_645920.1 CDS Rxyl_3203 NC_008148.1 3216466 3217176 R PFAM: protein of unknown function DUF92, transmembrane; KEGG: gvi:gll0900 hypothetical protein; hypothetical protein complement(3216466..3217176) Rubrobacter xylanophilus DSM 9941 4115000 YP_645921.1 CDS Rxyl_3204 NC_008148.1 3217188 3217637 R hypothetical protein complement(3217188..3217637) Rubrobacter xylanophilus DSM 9941 4115001 YP_645922.1 CDS Rxyl_3205 NC_008148.1 3217642 3217977 R PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: tbd:Tbd_0023 hypothetical protein with TPR repeat; hypothetical protein complement(3217642..3217977) Rubrobacter xylanophilus DSM 9941 4115002 YP_645923.1 CDS Rxyl_3207 NC_008148.1 3218370 3218588 D TIGRFAM: molybdenum-pterin binding domain; PFAM: TOBE; KEGG: gvi:gsl4284 ABC transporter solute-binding protein; molybdenum-pterin-binding domain-containing protein 3218370..3218588 Rubrobacter xylanophilus DSM 9941 4115003 YP_645924.1 CDS Rxyl_3208 NC_008148.1 3218647 3219810 R PFAM: Lytic transglycosylase, catalytic; KEGG: tfu:Tfu_0480 similar to cell wall-associated hydrolase (invasion-associated proteins); lytic transglycosylase catalytic subunit complement(3218647..3219810) Rubrobacter xylanophilus DSM 9941 4115004 YP_645925.1 CDS Rxyl_3209 NC_008148.1 3219837 3220703 R TIGRFAM: parB-like partition proteins; PFAM: ParB-like nuclease; KEGG: sth:STH3332 ParBc, ParB-like nuclease domain; chromosome segregation DNA-binding protein complement(3219837..3220703) Rubrobacter xylanophilus DSM 9941 4115005 YP_645926.1 CDS Rxyl_3210 NC_008148.1 3220696 3221463 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sth:STH3333 ParA, ParA family ATPase; chromosome segregation ATPase complement(3220696..3221463) Rubrobacter xylanophilus DSM 9941 4115006 YP_645927.1 CDS Rxyl_3211 NC_008148.1 3221494 3222279 R TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: dra:DR0014 gidB protein; methyltransferase GidB complement(3221494..3222279) Rubrobacter xylanophilus DSM 9941 4115007 YP_645928.1 CDS Rxyl_3212 NC_008148.1 3222345 3223031 R PFAM: single-stranded nucleic acid binding R3H; KEGG: sth:STH3337 SpoIIIJ-associated RNA-binding protein; single-stranded nucleic acid binding R3H complement(3222345..3223031) Rubrobacter xylanophilus DSM 9941 4115008 YP_645929.1 CDS Rxyl_3213 NC_008148.1 3223028 3223864 R PFAM: 60 kDa inner membrane insertion protein; KEGG: pca:Pcar_3143 hypothetical protein; protein translocase subunit yidC complement(3223028..3223864) Rubrobacter xylanophilus DSM 9941 4115009 YP_645930.1 CDS Rxyl_3214 NC_008148.1 3223875 3224087 R PFAM: protein of unknown function DUF37; KEGG: tte:TTE2800 conserved hypothetical protein; hypothetical protein complement(3223875..3224087) Rubrobacter xylanophilus DSM 9941 4115010 YP_645931.1 CDS Rxyl_3215 NC_008148.1 3224087 3224431 R TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: tte:TTE2801 RNase P protein component; ribonuclease P protein component complement(3224087..3224431) Rubrobacter xylanophilus DSM 9941 4115011 YP_645932.1 CDS Rxyl_3216 NC_008148.1 3224435 3224569 R PFAM: ribosomal protein L34; KEGG: mhp:MHP7448_0678 50S ribosomal protein L34; 50S ribosomal protein L34 complement(3224435..3224569) Rubrobacter xylanophilus DSM 9941 4115012 YP_645933.1 CDS Rxyl_3217 NC_008148.1 3224940 3225743 D PFAM: transcriptional regulator TrmB ATP-binding region, ATPase-like; KEGG: sma:SAV2396 putative potassium transport system, two-component system sensor kinase; transcriptional regulator TrmB 3224940..3225743 Rubrobacter xylanophilus DSM 9941 4115013 Rxyl_R0002 tRNA Rxyl_R0002 NC_008148.1 15245 15317 R tRNA-Gly complement(15245..15317) Rubrobacter xylanophilus DSM 9941 4115015 Rxyl_R0003 tRNA Rxyl_R0003 NC_008148.1 30643 30726 D tRNA-Leu 30643..30726 Rubrobacter xylanophilus DSM 9941 4115016 Rxyl_R0005 tRNA Rxyl_R0005 NC_008148.1 371715 371785 D tRNA-Gln 371715..371785 Rubrobacter xylanophilus DSM 9941 4115018 Rxyl_R0006 tRNA Rxyl_R0006 NC_008148.1 619467 619540 R tRNA-Arg complement(619467..619540) Rubrobacter xylanophilus DSM 9941 4115019 Rxyl_R0008 tRNA Rxyl_R0008 NC_008148.1 780592 780681 R tRNA-Ser complement(780592..780681) Rubrobacter xylanophilus DSM 9941 4115021 Rxyl_R0010 tRNA Rxyl_R0010 NC_008148.1 934242 934315 D tRNA-Gln 934242..934315 Rubrobacter xylanophilus DSM 9941 4115023 Rxyl_R0011 tRNA Rxyl_R0011 NC_008148.1 955404 955477 D tRNA-Leu 955404..955477 Rubrobacter xylanophilus DSM 9941 4115024 Rxyl_R0012 tRNA Rxyl_R0012 NC_008148.1 1024685 1024758 D tRNA-Pro 1024685..1024758 Rubrobacter xylanophilus DSM 9941 4115025 Rxyl_R0013 tRNA Rxyl_R0013 NC_008148.1 1038628 1038702 D tRNA-Lys 1038628..1038702 Rubrobacter xylanophilus DSM 9941 4115026 Rxyl_R0014 tRNA Rxyl_R0014 NC_008148.1 1038703 1038775 D tRNA-Glu 1038703..1038775 Rubrobacter xylanophilus DSM 9941 4115027 Rxyl_R0015 tRNA Rxyl_R0015 NC_008148.1 1038792 1038863 D tRNA-Val 1038792..1038863 Rubrobacter xylanophilus DSM 9941 4115028 Rxyl_R0016 tRNA Rxyl_R0016 NC_008148.1 1040076 1040149 D tRNA-Asp 1040076..1040149 Rubrobacter xylanophilus DSM 9941 4115029 Rxyl_R0017 tRNA Rxyl_R0017 NC_008148.1 1040568 1040640 D tRNA-Phe 1040568..1040640 Rubrobacter xylanophilus DSM 9941 4115030 Rxyl_R0019 tRNA Rxyl_R0019 NC_008148.1 1324076 1324148 D tRNA-Gly 1324076..1324148 Rubrobacter xylanophilus DSM 9941 4115032 Rxyl_R0020 tRNA Rxyl_R0020 NC_008148.1 1324169 1324239 D tRNA-Cys 1324169..1324239 Rubrobacter xylanophilus DSM 9941 4115033 Rxyl_R0021 tRNA Rxyl_R0021 NC_008148.1 1324262 1324333 D tRNA-Val 1324262..1324333 Rubrobacter xylanophilus DSM 9941 4115034 Rxyl_R0026 tRNA Rxyl_R0026 NC_008148.1 1521231 1521304 R tRNA-Met complement(1521231..1521304) Rubrobacter xylanophilus DSM 9941 4115039 Rxyl_R0027 tRNA Rxyl_R0027 NC_008148.1 1521307 1521381 R tRNA-Asn complement(1521307..1521381) Rubrobacter xylanophilus DSM 9941 4115040 Rxyl_R0028 tRNA Rxyl_R0028 NC_008148.1 1539823 1539895 R tRNA-Ala complement(1539823..1539895) Rubrobacter xylanophilus DSM 9941 4115041 Rxyl_R0029 tRNA Rxyl_R0029 NC_008148.1 1556071 1556154 R tRNA-Leu complement(1556071..1556154) Rubrobacter xylanophilus DSM 9941 4115042 Rxyl_R0030 tRNA Rxyl_R0030 NC_008148.1 1584674 1584746 R tRNA-His complement(1584674..1584746) Rubrobacter xylanophilus DSM 9941 4115043 Rxyl_R0031 tRNA Rxyl_R0031 NC_008148.1 1616352 1616424 R tRNA-Arg complement(1616352..1616424) Rubrobacter xylanophilus DSM 9941 4115404 Rxyl_R0032 tRNA Rxyl_R0032 NC_008148.1 1625329 1625399 R tRNA-Gly complement(1625329..1625399) Rubrobacter xylanophilus DSM 9941 4115405 Rxyl_R0033 tRNA Rxyl_R0033 NC_008148.1 1625420 1625494 R tRNA-Pro complement(1625420..1625494) Rubrobacter xylanophilus DSM 9941 4115406 Rxyl_R0035 tRNA Rxyl_R0035 NC_008148.1 1947946 1948018 R tRNA-Thr complement(1947946..1948018) Rubrobacter xylanophilus DSM 9941 4115408 Rxyl_R0036 tRNA Rxyl_R0036 NC_008148.1 2002611 2002699 R tRNA-Sec complement(2002611..2002699) Rubrobacter xylanophilus DSM 9941 4115409 Rxyl_R0037 tRNA Rxyl_R0037 NC_008148.1 2024178 2024265 D tRNA-Leu 2024178..2024265 Rubrobacter xylanophilus DSM 9941 4115410 Rxyl_R0038 tRNA Rxyl_R0038 NC_008148.1 2059938 2060021 D tRNA-Leu 2059938..2060021 Rubrobacter xylanophilus DSM 9941 4115411 Rxyl_R0040 tRNA Rxyl_R0040 NC_008148.1 2184005 2184077 R tRNA-Trp complement(2184005..2184077) Rubrobacter xylanophilus DSM 9941 4115394 Rxyl_R0041 tRNA Rxyl_R0041 NC_008148.1 2185578 2185651 R tRNA-Met complement(2185578..2185651) Rubrobacter xylanophilus DSM 9941 4115395 Rxyl_R0042 tRNA Rxyl_R0042 NC_008148.1 2185683 2185755 R tRNA-Thr complement(2185683..2185755) Rubrobacter xylanophilus DSM 9941 4115396 Rxyl_R0043 tRNA Rxyl_R0043 NC_008148.1 2185766 2185851 R tRNA-Tyr complement(2185766..2185851) Rubrobacter xylanophilus DSM 9941 4115397 Rxyl_R0044 tRNA Rxyl_R0044 NC_008148.1 2185936 2186007 R tRNA-Thr complement(2185936..2186007) Rubrobacter xylanophilus DSM 9941 4115398 Rxyl_R0045 tRNA Rxyl_R0045 NC_008148.1 2206288 2206361 R tRNA-Met complement(2206288..2206361) Rubrobacter xylanophilus DSM 9941 4115399 Rxyl_R0046 tRNA Rxyl_R0046 NC_008148.1 2228976 2229050 D tRNA-Val 2228976..2229050 Rubrobacter xylanophilus DSM 9941 4115400 Rxyl_R0047 tRNA Rxyl_R0047 NC_008148.1 2293628 2293700 D tRNA-Ala 2293628..2293700 Rubrobacter xylanophilus DSM 9941 4115401 Rxyl_R0049 tRNA Rxyl_R0049 NC_008148.1 2304069 2304141 R tRNA-Arg complement(2304069..2304141) Rubrobacter xylanophilus DSM 9941 4115403 Rxyl_R0050 tRNA Rxyl_R0050 NC_008148.1 2308212 2308285 R tRNA-Pro complement(2308212..2308285) Rubrobacter xylanophilus DSM 9941 4115413 Rxyl_R0052 tRNA Rxyl_R0052 NC_008148.1 2455474 2455546 R tRNA-Ala complement(2455474..2455546) Rubrobacter xylanophilus DSM 9941 4115415 Rxyl_R0054 tRNA Rxyl_R0054 NC_008148.1 2476169 2476242 R tRNA-Ile complement(2476169..2476242) Rubrobacter xylanophilus DSM 9941 4115417 Rxyl_R0056 tRNA Rxyl_R0056 NC_008148.1 2590390 2590480 R tRNA-Ser complement(2590390..2590480) Rubrobacter xylanophilus DSM 9941 4115419 Rxyl_R0057 tRNA Rxyl_R0057 NC_008148.1 2605957 2606029 D tRNA-Arg 2605957..2606029 Rubrobacter xylanophilus DSM 9941 4115420 Rxyl_R0058 tRNA Rxyl_R0058 NC_008148.1 2661013 2661085 D tRNA-Lys 2661013..2661085 Rubrobacter xylanophilus DSM 9941 4115421 Rxyl_R0059 tRNA Rxyl_R0059 NC_008148.1 2670191 2670275 R tRNA-Ser complement(2670191..2670275) Rubrobacter xylanophilus DSM 9941 4115422 Rxyl_R0061 tRNA Rxyl_R0061 NC_008148.1 2863858 2863933 D tRNA-Glu 2863858..2863933 Rubrobacter xylanophilus DSM 9941 4115424 Rxyl_R0062 tRNA Rxyl_R0062 NC_008148.1 2875142 2875231 R tRNA-Ser complement(2875142..2875231) Rubrobacter xylanophilus DSM 9941 4115425 Rxyl_R0022 rRNA Rxyl_R0022 NC_008148.1 1337366 1338878 D 16S ribosomal RNA 1337366..1338878 Rubrobacter xylanophilus DSM 9941 4115035 Rxyl_R0023 rRNA Rxyl_R0023 NC_008148.1 1339144 1342143 D 23S ribosomal RNA 1339144..1342143 Rubrobacter xylanophilus DSM 9941 4115036 Rxyl_R0024 rRNA Rxyl_R0024 NC_008148.1 1342229 1342345 D 5S ribosomal RNA 1342229..1342345 Rubrobacter xylanophilus DSM 9941 4115037