-- dump date 20140620_035232 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 693978000001 SEQ_END SEQ_END NC_014738.1 2155121 2155121 DR NC_014738.1; contig end 2155121..2155121 Riemerella anatipestifer ATCC 11845 = DSM 15868 YP_004044689.1 CDS Riean_0001 NC_014738.1 16 1494 D COGs: COG0593 ATPase involved in DNA replication initiation; InterPro IPR001957: IPR013317: IPR013159: IPR003593: IPR 020591: IPR018312; KEGG: fba:FIC_00536 chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; SPTR: Chromosomal replication initiator protein dnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA; chromosomal replication initiator protein dnaa 16..1494 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002783 YP_004044690.1 CDS Riean_0002 NC_014738.1 1588 2034 D COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867: IPR000106; KEGG: zpr:ZPR_3591 low molecular weight phosphotyrosine protein phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: Protein tyrosine phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase; protein tyrosine phosphatase 1588..2034 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000732 YP_004044691.1 CDS Riean_0003 NC_014738.1 2034 2738 D COGs: COG0313 methyltransferase; InterPro IPR000878; KEGG: fba:FIC_00538 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family; uroporphyrin-iii c/tetrapyrrole (corrin/porphyrin) methyltransferase 2034..2738 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000733 YP_004044692.1 CDS Riean_0004 NC_014738.1 2744 3178 R COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: fba:FIC_00502 rrf2 family protein (transcriptional regulator); PFAM: protein of unknown function UPF0074; SPTR: Rrf2 family protein (Putative transcriptional regulator); TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (transcriptional regulator); transcriptional regulator, badm/rrf2 family complement(2744..3178) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000734 YP_004044693.1 CDS Riean_0005 NC_014738.1 3190 3567 R KEGG: fba:FIC_00501 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(3190..3567) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000735 YP_004044694.1 CDS Riean_0006 NC_014738.1 3626 4096 R COGs: COG1522 Transcriptional regulators; InterPro IPR019887: IPR019888: IPR000485: IPR019885; KEGG: fba:FIC_00500 probable transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; SPTR: Probable transcriptional regulator; PFAM: HTH domain; AsnC family; ArsR family transcriptional regulator complement(3626..4096) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000736 YP_004044695.1 CDS Riean_0007 NC_014738.1 4227 8945 R COGs: COG2911 conserved hypothetical protein; KEGG: fba:FIC_00499 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(4227..8945) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000737 YP_004044696.1 CDS Riean_0008 NC_014738.1 8950 9975 D COGs: COG0533 Metal-dependent protease with possible chaperone activity; InterPro IPR000905: IPR017861; KEGG: fba:FIC_00498 probable O-sialoglycoprotein endopeptidase; PFAM: peptidase M22 glycoprotease; PRIAM: O-sialoglycoprotein endopeptidase; SPTR: Probable O-sialoglycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: Glycoprotease family; TIGRFAM: glycoprotease GCP; metallohydrolase, glycoprotease/Kae1 family; o-sialoglycoprotein endopeptidase 8950..9975 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000738 YP_004044697.1 CDS Riean_0009 NC_014738.1 9987 10682 D COGs: COG1385 conserved hypothetical protein; InterPro IPR006700; KEGG: fba:FIC_00497 ribosomal RNA small subunit methyltransferase E; PFAM: protein of unknown function DUF558; SPTR: Protein of hypothetical function DUF558; PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family; hypothetical protein 9987..10682 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000739 YP_004044698.1 CDS Riean_0010 NC_014738.1 10722 11534 R COGs: COG1968 Uncharacterized bacitracin resistance protein; InterPro IPR003824; KEGG: fba:FIC_00937 undecaprenyl-diphosphatase; PFAM: Bacitracin resistance protein BacA; SPTR: Undecaprenyl-diphosphatase; PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP; undecaprenyl-diphosphatase complement(10722..11534) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000740 YP_004044699.1 CDS Riean_0011 NC_014738.1 11610 11870 R KEGG: fba:FIC_00936 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3098); hypothetical protein complement(11610..11870) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000741 YP_004044700.1 CDS Riean_0012 NC_014738.1 11874 12773 R COGs: COG2177 Cell division protein; InterPro IPR003838; KEGG: fba:FIC_00935 cell division protein FtsX; PFAM: protein of unknown function DUF214; SPTR: Probable cell division protein; PFAM: Predicted permease; cell division protein ftsx complement(11874..12773) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000742 YP_004044701.1 CDS Riean_0013 NC_014738.1 12874 13662 D COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); InterPro IPR011530: IPR001737: IPR020598; KEGG: fba:FIC_00934 dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: Ribosomal RNA adenine methylase transferase-like; SPTR: Ribosomal RNA small subunit methyltransferase A; TIGRFAM: dimethyladenosine transferase; PFAM: Ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase; dimethyladenosine transferase 12874..13662 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000743 YP_004044702.1 CDS Riean_0014 NC_014738.1 13682 15031 D COGs: COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); InterPro IPR006668: IPR000644: IPR006667: IPR006669; KEGG: coc:Coch_1980 magnesium transporter; PFAM: MgtE integral membrane region; MgtE intracellular region; CBS domain containing protein; SMART: CBS domain containing protein; SPTR: Magnesium transporter; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular N domain; Divalent cation transporter; CBS domain; TIGRFAM: Mg2+ transporter (mgtE); magnesium transporter 13682..15031 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000744 YP_004044703.1 CDS Riean_0015 NC_014738.1 15118 15576 D KEGG: nam:NAMH_0210 exonuclease; SPTR: Putative uncharacterized protein; hypothetical protein 15118..15576 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000745 YP_004044704.1 CDS Riean_0016 NC_014738.1 15817 16311 D KEGG: cat:CA2559_10813 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 15817..16311 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000746 YP_004044705.1 CDS Riean_0017 NC_014738.1 16477 17037 D KEGG: fba:FIC_00283 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 16477..17037 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000747 YP_004044706.1 CDS Riean_0018 NC_014738.1 17067 17633 D COGs: COG1335 Amidase related to nicotinamidase; InterPro IPR000868; KEGG: fjo:Fjoh_2530 isochorismatase hydrolase; PFAM: isochorismatase hydrolase; SPTR: Isochorismatase; PFAM: Isochorismatase family; isochorismatase hydrolase 17067..17633 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000748 YP_004044707.1 CDS Riean_0019 NC_014738.1 17652 18959 D KEGG: chu:CHU_0622 hypothetical protein; SPTR: Possible glycosyl hydrolase, BNR protein; PFAM: IPT/TIG domain; hypothetical protein 17652..18959 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000749 YP_004044708.1 CDS Riean_0020 NC_014738.1 19060 19746 D COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; InterPro IPR003000; KEGG: fba:FIC_01325 NAD-dependent protein deacetylase of SIR2 family; PFAM: Silent information regulator protein Sir2; SPTR: NAD-dependent protein deacetylase of SIR2 family; PFAM: Sir2 family; silent information regulator protein sir2 19060..19746 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000750 YP_004044709.1 CDS Riean_0021 NC_014738.1 19743 20396 R COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR001367; KEGG: fba:FIC_02393 Mn-dependent transcriptional regulator MntR; PFAM: iron dependent repressor; SMART: iron dependent repressor; SPTR: Transcriptional regulatory protein; PFAM: Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain; iron (metal) dependent repressor, dtxr family complement(19743..20396) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000751 YP_004044710.1 CDS Riean_0022 NC_014738.1 20441 21349 R COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR002523; KEGG: fba:FIC_01370 magnesium and cobalt transport protein; PFAM: Mg2 transporter protein CorA family protein; SPTR: CorA family Mg2+ transporter protein; PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA); mg2 transporter protein cora family protein complement(20441..21349) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000752 YP_004044711.1 CDS Riean_0023 NC_014738.1 21423 22310 R COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220: IPR005263; KEGG: fba:FIC_00473 dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; SPTR: Dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: dihydrodipicolinate synthase; dihydrodipicolinate synthase complement(21423..22310) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000753 YP_004044712.1 CDS Riean_0024 NC_014738.1 22582 25305 D InterPro IPR012910: IPR000531: IPR018247: IPR010917; KEGG: fba:FIC_00541 SusC, outer membrane protein involved in starch binding; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent outer membrane receptor; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; tonb-dependent receptor plug 22582..25305 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000754 YP_004044713.1 CDS Riean_0025 NC_014738.1 25338 26930 D InterPro IPR012944; KEGG: cpi:Cpin_5091 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: Outer membrane protein; PFAM: SusD family; ragb/susd domain-containing protein 25338..26930 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000755 YP_004044714.1 CDS Riean_0026 NC_014738.1 27012 29159 D InterPro IPR019563; KEGG: fba:FIC_00545 alpha-glucosidase; PFAM: Glycoside hydrolase 97; SPTR: Alpha-glucosidase; PFAM: Glycoside hydrolase 97; glycoside hydrolase 97 27012..29159 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000756 YP_004044715.1 CDS Riean_0027 NC_014738.1 29331 32570 D COGs: COG0793 Periplasmic protease; InterPro IPR011659: IPR005151: IPR012393; KEGG: bfs:BF0080 peptidase/protease family protein; PFAM: peptidase S41; WD40-like beta Propeller containing protein; SPTR: Putative peptidase/protease family protein; PFAM: WD40-like Beta Propeller Repeat; Peptidase family S41; peptidase s41 29331..32570 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000757 YP_004044716.1 CDS Riean_0028 NC_014738.1 32644 32769 R hypothetical protein complement(32644..32769) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000758 YP_004044717.1 CDS Riean_0029 NC_014738.1 32771 33649 R InterPro IPR002559; KEGG: cth:Cthe_2323 transposase, IS4; PFAM: transposase IS4 family protein; SPTR: Transposase; PFAM: Transposase DDE domain; transposase is4 family protein complement(32771..33649) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000759 YP_004044718.1 CDS Riean_0030 NC_014738.1 33760 35079 D KEGG: pmx:PERMA_1280 phosphate-selective porin O and P superfamily protein; SPTR: Phosphate-selective porin O and P superfamily protein; phosphate-selective porin o and p superfamily protein 33760..35079 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000760 YP_004044719.1 CDS Riean_0031 NC_014738.1 35144 35401 D KEGG: fba:FIC_01614 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 35144..35401 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000761 YP_004044720.1 CDS Riean_0034 NC_014738.1 36198 37106 D COGs: COG3781 membrane protein; KEGG: chu:CHU_1817 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Bestrophin; hypothetical protein 36198..37106 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000764 YP_004044721.1 CDS Riean_0035 NC_014738.1 37118 37414 D KEGG: fba:FIC_01614 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 37118..37414 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000765 YP_004044722.1 CDS Riean_0036 NC_014738.1 37411 39441 R COGs: COG4389 Site-specific recombinase; InterPro IPR011385; KEGG: fba:FIC_01615 probable site-specific recombinase; PFAM: site-specific recombinase Gcr; SPTR: Probable site-specific recombinase; PFAM: Site-specific recombinase; site-specific recombinase gcr complement(37411..39441) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000766 YP_004044723.1 CDS Riean_0037 NC_014738.1 39447 40091 R COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR001264: IPR011812; KEGG: fba:FIC_01616 monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; SPTR: Transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: Transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; monofunctional biosynthetic peptidoglycan transglycosylase complement(39447..40091) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000767 YP_004044724.1 CDS Riean_0038 NC_014738.1 40280 41485 R COGs: COG1408 phosphohydrolase; InterPro IPR004843: IPR006311; KEGG: fba:FIC_00511 hypothetical protein; PFAM: metallophosphoesterase; SPTR: Putative membrane protein; PFAM: Calcineurin-like phosphoesterase; metallophosphoesterase complement(40280..41485) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000768 YP_004044725.1 CDS Riean_0040 NC_014738.1 42357 42896 R InterPro IPR002110: IPR020683; KEGG: sli:Slin_0458 ankyrin; PFAM: Ankyrin; SMART: Ankyrin; SPTR: Ankyrin repeat protein; PFAM: Ankyrin repeat; ankyrin complement(42357..42896) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000770 YP_004044726.1 CDS Riean_0041 NC_014738.1 42986 44515 R COGs: COG0753 Catalase; InterPro IPR018028: IPR010582: IPR011614: IPR002226; KEGG: bpu:BPUM_0892 catalase KatX2; PFAM: Catalase related subgroup; Catalase domain protein; PRIAM: Catalase; SPTR: Catalase; PFAM: Catalase; Catalase-related immune-responsive; catalase complement(42986..44515) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000771 YP_004044727.1 CDS Riean_0042 NC_014738.1 44647 45525 D InterPro IPR002559; KEGG: cth:Cthe_2323 transposase, IS4; PFAM: transposase IS4 family protein; SPTR: Transposase; PFAM: Transposase DDE domain; transposase is4 family protein 44647..45525 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000772 YP_004044728.1 CDS Riean_0046 NC_014738.1 49973 51421 D KEGG: cpi:Cpin_6565 RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family; hypothetical protein 49973..51421 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000776 YP_004044729.1 CDS Riean_0047 NC_014738.1 51489 51986 D KEGG: bfo:BRAFLDRAFT_91397 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 51489..51986 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000777 YP_004044730.1 CDS Riean_0048 NC_014738.1 52442 53035 D KEGG: pfh:PFHG_02267 conserved hypothetical protein; SPTR: Predicted protein; hypothetical protein 52442..53035 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000778 YP_004044731.1 CDS Riean_0049 NC_014738.1 53068 53256 D KEGG: nda:Ndas_1670 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 53068..53256 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000779 YP_004044732.1 CDS Riean_0050 NC_014738.1 53319 54050 D InterPro IPR019115; KEGG: zpr:ZPR_4163 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; hypothetical protein 53319..54050 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000780 YP_004044733.1 CDS Riean_0051 NC_014738.1 54072 54197 R manually curated; hypothetical protein complement(54072..54197) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000781 YP_004044734.1 CDS Riean_0053 NC_014738.1 54973 55737 R KEGG: fba:FIC_00515 PorT protein; SPTR: PorT protein; port protein complement(54973..55737) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000783 YP_004044735.1 CDS Riean_0054 NC_014738.1 55782 56504 R COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR004033; KEGG: fba:FIC_00514 ubiquinone/menaquinone biosynthesis methyltransferase UbiE/COQ5; PFAM: UbiE/COQ5 methyltransferase; SPTR: Menaquinone biosynthesis methyltransferase ubiE; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: ubiE/COQ5 methyltransferase family; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; demethylmenaquinone methyltransferase complement(55782..56504) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000784 YP_004044736.1 CDS Riean_0055 NC_014738.1 56517 57086 R KEGG: fba:FIC_00513 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(56517..57086) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000785 YP_004044737.1 CDS Riean_0056 NC_014738.1 57231 58298 D COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR013751: IPR013747; KEGG: fba:FIC_00512 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase III; SPTR: 3-oxoacyl-(Acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; beta-ketoacyl-acyl-carrier-protein synthase iii 57231..58298 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000786 YP_004044738.1 CDS Riean_0057 NC_014738.1 58311 58655 D COGs: COG1950 membrane protein; InterPro IPR007165; KEGG: fba:FIC_01173 hypothetical protein; PFAM: membrane protein of unknown function; SPTR: Putative membrane protein; PFAM: Membrane protein of unknown function; hypothetical protein 58311..58655 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000787 YP_004044739.1 CDS Riean_0058 NC_014738.1 58663 59949 R InterPro IPR019026; KEGG: coc:Coch_0070 hypothetical protein; PFAM: Peptidase M64, IgA; SPTR: Putative uncharacterized protein; PFAM: IgA Peptidase M64; peptidase m64, iga complement(58663..59949) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000788 YP_004044740.1 CDS Riean_0059 NC_014738.1 60073 61164 D COGs: COG0012 GTPase probable translation factor; InterPro IPR002917: IPR013029: IPR004396: IPR006073; KEGG: fba:FIC_01269 GTP-binding and nucleic aciD-binding protein YchF; PFAM: protein of unknown function DUF933; GTP-binding protein HSR1-related; SPTR: GTP-binding protein; TIGRFAM: GTP-binding protein YchF; PFAM: GTPase of unknown function; Protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF; GTP-binding protein ychf 60073..61164 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000789 YP_004044741.1 CDS Riean_0060 NC_014738.1 61241 61894 R COGs: COG0176 Transaldolase; InterPro IPR001585: IPR004731: IPR018225; KEGG: fba:FIC_01004 translaldolase; PFAM: Transaldolase; SPTR: Transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; TIGRFAM: fructose-6-phosphate aldolase, TalC/MipB family; transaldolase complement(61241..61894) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000790 YP_004044742.1 CDS Riean_0061 NC_014738.1 62019 62837 D COGs: COG0623 Enoyl-(acyl-carrier-protein); KEGG: fba:FIC_02396 enoyl-[acyl-carrier-protein] reductase (NADH); PRIAM: Enoyl-[acyl-carrier-protein] reductase (NADH); SPTR: Enoyl-[acyl-carrier-protein] reductase (NADH); PFAM: short chain dehydrogenase; enoyl-ACP reductase 62019..62837 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000791 YP_004044743.1 CDS Riean_0062 NC_014738.1 62925 64007 D COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130: IPR001179; KEGG: fba:FIC_01349 probable peptidyl-prolyl cis-trans isomerase; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; peptidylprolyl isomerase FKBP-type; PRIAM: Peptidylprolyl isomerase; SPTR: Cyclophilin/FKBP-type peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; peptidyl-prolyl isomerase 62925..64007 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000792 YP_004044744.1 CDS Riean_0063 NC_014738.1 64228 64677 D InterPro IPR000835; KEGG: fba:FIC_00947 regulatory protein, MarR; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: MarR family transcriptional regulator; PFAM: MarR family; regulatory protein marr 64228..64677 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000793 YP_004044745.1 CDS Riean_0064 NC_014738.1 64701 67106 D COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176: IPR006108: IPR001753: IPR001412; KEGG: fba:FIC_00946 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase (isoleucine degradation); PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; Enoyl-CoA hydratase/isomerase; SPTR: 3-hydroxyacyl-CoA dehydrogenase; PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; 3-hydroxyacyl-CoA dehydrogenase naD-binding protein 64701..67106 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000794 YP_004044746.1 CDS Riean_0065 NC_014738.1 67175 68353 D COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR020616: IPR020617: IPR002155: IPR020615: IPR 020610: IPR020613; KEGG: fba:FIC_00944 3-ketoacyl-CoA thiolase; PFAM: Thiolase-like; SPTR: Acetyl-CoA C-acyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; acetyl-CoA acetyltransferase 67175..68353 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000795 YP_004044747.1 CDS Riean_0066 NC_014738.1 68405 70183 D COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092: IPR006091: IPR006090: IPR006089; KEGG: fba:FIC_00942 acyl-CoA dehydrogenase, short-chain specific; PFAM: acyl-CoA dehydrogenase domain-containing protein; SPTR: Acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; acyl-CoA dehydrogenase domain-containing protein 68405..70183 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000796 YP_004044748.1 CDS Riean_0067 NC_014738.1 71048 71248 R KEGG: pfh:PFHG_02301 conserved hypothetical protein; hypothetical protein complement(71048..71248) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000797 YP_004044749.1 CDS Riean_0068 NC_014738.1 71297 72064 D KEGG: nis:NIS_1393 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 71297..72064 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000798 YP_004044750.1 CDS Riean_0069 NC_014738.1 72068 72649 D KEGG: sde:Sde_2308 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 72068..72649 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000799 YP_004044751.1 CDS Riean_0070 NC_014738.1 72810 73478 D KEGG: sna:Snas_6193 glycoside hydrolase family 43; SPTR: Hypothetical membrane protein; hypothetical protein 72810..73478 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000800 YP_004044752.1 CDS Riean_0071 NC_014738.1 73515 74285 R InterPro IPR014127; KEGG: fba:FIC_00932 hypothetical protein; PFAM: Conserved hypothetical protein CHP02757; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2400); TIGRFAM: conserved hypothetical protein TIGR02757; hypothetical protein complement(73515..74285) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000801 YP_004044753.1 CDS Riean_0072 NC_014738.1 74285 75199 R COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III; InterPro IPR013471; KEGG: fba:FIC_00931 ribonuclease Z; SPTR: Ribonuclease Z; TIGRFAM: ribonuclease Z; PFAM: Metallo-beta-lactamase superfamily; TIGRFAM: ribonuclease Z; rnase z complement(74285..75199) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000802 YP_004044754.1 CDS Riean_0073 NC_014738.1 75213 75788 R COGs: COG0127 Xanthosine triphosphate pyrophosphatase; InterPro IPR020922: IPR002637; KEGG: fba:FIC_01566 nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific); PFAM: Ham1 family protein; SPTR: Nucleoside-triphosphatase; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; non-canonical purine ntp pyrophosphatase, rdgb/ham1 family complement(75213..75788) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000803 YP_004044755.1 CDS Riean_0074 NC_014738.1 75803 76615 R InterPro IPR003675; KEGG: fba:FIC_01567 CAAX amino terminal protease family protein; PFAM: Abortive infection protein; SPTR: CAAX amino terminal protease family protein; PFAM: CAAX amino terminal protease family; abortive infection protein complement(75803..76615) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000804 YP_004044756.1 CDS Riean_0075 NC_014738.1 76778 77791 D KEGG: fba:FIC_00728 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 76778..77791 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000805 YP_004044757.1 CDS Riean_0076 NC_014738.1 77827 78402 D COGs: COG0634 Hypoxanthine-guanine phosphoribosyltransferase; InterPro IPR000836: IPR005904; KEGG: fba:FIC_00746 hypoxanthine-guanine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Hypoxanthine phosphoribosyltransferase; SPTR: Hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 77827..78402 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000806 YP_004044758.1 CDS Riean_0077 NC_014738.1 78471 79052 D COGs: COG0563 Adenylate kinase and related kinase; InterPro IPR000850; KEGG: fba:FIC_00745 adenylate kinase; PFAM: adenylate kinase; SPTR: Adenylate kinase; PFAM: Adenylate kinase; TIGRFAM: adenylate kinases; adenylate kinase 78471..79052 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000807 YP_004044759.1 CDS Riean_0078 NC_014738.1 79151 80134 D COGs: COG0536 GTPase; InterPro IPR006169: IPR002917: IPR014100: IPR005225: IPR 006073: IPR006074; KEGG: fba:FIC_00744 GTP-binding protein; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; SPTR: GTP-binding protein; TIGRFAM: GTP-binding protein Obg/CgtA; small GTP-binding protein; PFAM: GTPase of unknown function; GTP1/OBG; TIGRFAM: Obg family GTPase CgtA; small GTP-binding protein domain; GTP-binding protein obg/cgta 79151..80134 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000808 YP_004044760.1 CDS Riean_0079 NC_014738.1 80157 80924 R COGs: COG0084 Mg-dependent DNase; InterPro IPR001130: IPR012278: IPR015991; KEGG: fba:FIC_00739 deoxyribonuclease YcfH; PFAM: TatD-related deoxyribonuclease; SPTR: TatD family deoxyribonuclease; TIGRFAM: hydrolase, TatD family; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family; hydrolase, tatd family complement(80157..80924) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000809 YP_004044761.1 CDS Riean_0080 NC_014738.1 80938 81897 R InterPro IPR014982; KEGG: fba:FIC_00737 hypothetical protein; PFAM: GSCFA domain protein; SPTR: Putative uncharacterized protein; PFAM: GSCFA family; gscfa domain-containing protein complement(80938..81897) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000810 YP_004044762.1 CDS Riean_0081 NC_014738.1 81910 83217 R COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094: IPR016166; KEGG: fba:FIC_00760 hypothetical protein; PFAM: FAD linked oxidase domain protein; SPTR: Oxidoreductase, FAD-binding protein; PFAM: FAD binding domain; fad linked oxidase domain-containing protein complement(81910..83217) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000811 YP_004044763.1 CDS Riean_0082 NC_014738.1 83217 84107 R COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537; KEGG: fba:FIC_00759 UbiA prenyltransferase family protein; PFAM: UbiA prenyltransferase; SPTR: UbiA prenyltransferase family protein; PFAM: UbiA prenyltransferase family; ubia prenyltransferase complement(83217..84107) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000812 YP_004044764.1 CDS Riean_0083 NC_014738.1 84190 84882 R COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665: IPR006664; KEGG: fba:FIC_00758 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; SPTR: OmpA/MotB domain protein; PFAM: Rickettsia 17 kDa surface antigen; OmpA family; ompa/motb domain-containing protein complement(84190..84882) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000813 YP_004044765.1 CDS Riean_0084 NC_014738.1 84891 85382 R KEGG: fba:FIC_00757 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(84891..85382) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000814 YP_004044766.1 CDS Riean_0085 NC_014738.1 85530 86930 D COGs: COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); InterPro IPR000667; KEGG: fba:FIC_01537 D-alanyl-D-alanine carboxypeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; PRIAM: Serine-type D-Ala-D-Ala carboxypeptidase; SPTR: D-alanyl-D-alanine carboxypeptidase (Penicillin-binding protein 4); TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family; D-alanyl-D-alaninecarboxypeptidase/ D-alanyl-D-alanine-endopeptidase 85530..86930 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000815 YP_004044767.1 CDS Riean_0086 NC_014738.1 86936 88108 D COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594: IPR004358: IPR005467; KEGG: fba:FIC_01536 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: Sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; integral membrane sensor signal transduction histidine kinase 86936..88108 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000816 YP_004044768.1 CDS Riean_0087 NC_014738.1 88124 89245 R COGs: COG2812 DNA polymerase III gamma/tau subunits; KEGG: fba:FIC_01309 DNA polymerase III subunits gamma and tau; SPTR: DNA polymerase III subunits gamma and tau; DNA polymerase iii subunits gamma and tau complement(88124..89245) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000817 YP_004044769.1 CDS Riean_0088 NC_014738.1 89387 90658 D InterPro IPR000292; KEGG: fba:FIC_01308 outer membrane protein; SPTR: Putative outer membrane protein; outer membrane protein 89387..90658 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000818 YP_004044770.1 CDS Riean_0089 NC_014738.1 90677 91270 D KEGG: fba:FIC_01307 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1239); hypothetical protein 90677..91270 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000819 YP_004044771.1 CDS Riean_0090 NC_014738.1 91319 91708 R KEGG: fba:FIC_00572 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(91319..91708) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000820 YP_004044772.1 CDS Riean_0091 NC_014738.1 91743 92354 D InterPro IPR000086: IPR020476: IPR020084; KEGG: fba:FIC_00571 hypothetical protein; PFAM: NUDIX hydrolase; SPTR: NUDIX hydrolase; PFAM: NUDIX domain; TIGRFAM: mutator mutT protein; nudix hydrolase 91743..92354 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000821 YP_004044773.1 CDS Riean_0092 NC_014738.1 92337 93611 R COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase; InterPro IPR000713: IPR013221: IPR004101: IPR005863; KEGG: fba:FIC_00570 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- -D-alanyl- D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-al anineligase; TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-d iaminopimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase family, catalytic domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; UDP-n-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase complement(92337..93611) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000822 YP_004044774.1 CDS Riean_0093 NC_014738.1 93673 95286 R COGs: COG1262 conserved hypothetical protein; InterPro IPR005532: IPR019865; KEGG: fba:FIC_00569 GldJ; PFAM: protein of unknown function DUF323; SPTR: GldJ; TIGRFAM: gliding motility-associated lipoprotein GldJ; PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: gliding motility-associated lipoprotein GldJ; gliding motility protein gldj complement(93673..95286) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000823 YP_004044775.1 CDS Riean_0094 NC_014738.1 95518 99405 D KEGG: fba:FIC_00568 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 95518..99405 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000824 YP_004044776.1 CDS Riean_0095 NC_014738.1 99410 100546 D KEGG: fba:FIC_00567 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 99410..100546 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000825 YP_004044777.1 CDS Riean_0096 NC_014738.1 100680 101507 D COGs: COG1912 conserved hypothetical protein; InterPro IPR002747; KEGG: fba:FIC_00815 hypothetical protein; PFAM: protein of unknown function DUF62; SPTR: Putative uncharacterized protein; PFAM: S-adenosyl-l-methionine hydroxide adenosyltransferase; hypothetical protein 100680..101507 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000826 YP_004044778.1 CDS Riean_0097 NC_014738.1 101518 102063 D COGs: COG1981 membrane protein; InterPro IPR005265; KEGG: fba:FIC_00813 hypothetical protein; PFAM: Uncharacterised protein family UPF0093; SPTR: Membrane protein; PFAM: Uncharacterised protein family (UPF0093); TIGRFAM: conserved hypothetical integral membrane protein; hypothetical protein 101518..102063 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000827 YP_004044779.1 CDS Riean_0098 NC_014738.1 102078 102812 D KEGG: fba:FIC_00812 gliding motility protein GldF; SPTR: Gliding motility-associated ABC family transporter, permease protein; gliding motility protein gldf 102078..102812 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000828 YP_004044780.1 CDS Riean_0099 NC_014738.1 102815 104482 D COGs: COG3225 ABC-type uncharacterized transport system involved in gliding motility auxiliary component; InterPro IPR019196: IPR019863; KEGG: fba:FIC_00811 gliding motility protein GldG; PFAM: ABC-type uncharacterised transport system; SPTR: Gliding motility protein GldG; TIGRFAM: gliding-associated ABC transporter substrate-binding component GldG; PFAM: ABC-type uncharacterized transport system; TIGRFAM: gliding-associated ABC transporter substrate-binding component GldG; gliding motility protein gldg 102815..104482 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000829 YP_004044781.1 CDS Riean_0100 NC_014738.1 104494 105567 R COGs: COG0438 Glycosyltransferase; InterPro IPR001296: IPR018253; KEGG: fba:FIC_01608 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Group 1 glycosyl transferase; PFAM: Glycosyl transferases group 1; group 1 glycosyl transferase complement(104494..105567) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000830 YP_004044782.1 CDS Riean_0101 NC_014738.1 105572 107776 R COGs: COG0514 Superfamily II DNA helicase; InterPro IPR011545: IPR001650: IPR018982: IPR002121: IPR 014001: IPR006293: IPR018329: IPR014021: IPR018087; KEGG: fba:FIC_01605 ATP-dependent DNA helicase RecQ; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; RQC domain; HRDC domain protein; SMART: DEAD-like helicase; helicase domain protein; HRDC domain protein; SPTR: Possible superfamily II DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase recq complement(105572..107776) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000831 YP_004044783.1 CDS Riean_0102 NC_014738.1 107917 108876 D COGs: COG0794 sugar phosphate isomerase involved in capsule formation; InterPro IPR001347: IPR000644: IPR004800; KEGG: fba:FIC_01604 arabinose 5-phosphate isomerase; PFAM: sugar isomerase (SIS); CBS domain containing protein; PRIAM: Arabinose-5-phosphate isomerase; SPTR: Arabinose 5-phosphate isomerase; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain; SIS domain; TIGRFAM: KpsF/GutQ family protein; kpsf/gutq family protein 107917..108876 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000832 YP_004044784.1 CDS Riean_0103 NC_014738.1 108897 109724 D COGs: COG0805 Sec-independent protein secretion pathway component TatC; InterPro IPR002033; KEGG: fba:FIC_01603 twin-arginine translocation protein TatC; PFAM: Sec-independent periplasmic protein translocase; SPTR: Sec-independent protein secretion pathway component TatC; PFAM: Sec-independent protein translocase protein (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC; sec-independent protein translocase tatc 108897..109724 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000833 YP_004044785.1 CDS Riean_0104 NC_014738.1 109849 113334 D KEGG: fba:FIC_01301 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2723); hypothetical protein 109849..113334 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000834 YP_004044786.1 CDS Riean_0105 NC_014738.1 113438 113686 R KEGG: fba:FIC_00657 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(113438..113686) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000835 YP_004044787.1 CDS Riean_0106 NC_014738.1 113690 113998 R InterPro IPR013766: IPR017936; KEGG: fba:FIC_00658 thioredoxin; PFAM: Thioredoxin domain-containing protein; SPTR: Thioredoxin; PFAM: Thioredoxin; thioredoxin domain-containing protein complement(113690..113998) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000836 YP_004044788.1 CDS Riean_0107 NC_014738.1 114077 114709 R COGs: COG0450 Peroxiredoxin; InterPro IPR000866: IPR019479: IPR017936; KEGG: fba:FIC_00659 alkyl hydroperoxide reductase subunit C-like protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; SPTR: Peroxiredoxin; PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family; alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen complement(114077..114709) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000837 YP_004044789.1 CDS Riean_0108 NC_014738.1 114834 116030 R COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839: IPR001176: IPR004838; KEGG: fba:FIC_01345 aspartate aminotransferase; PFAM: aminotransferase class I and II; SPTR: Aspartate transaminase; PFAM: Aminotransferase class I and II; aminotransferase class i and ii complement(114834..116030) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000838 YP_004044790.1 CDS Riean_0109 NC_014738.1 116154 116300 D KEGG: fba:FIC_01041 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 116154..116300 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000839 YP_004044791.1 CDS Riean_0110 NC_014738.1 116458 117042 D COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: fba:FIC_01412 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; PFAM: cyclic nucleotide-binding; SPTR: cAMP-binding proteins-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; PFAM: Cyclic nucleotide-binding domain; transcriptional regulator, crp/fnr family 116458..117042 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000840 YP_004044792.1 CDS Riean_0111 NC_014738.1 117101 118492 D COGs: COG0486 GTPase; InterPro IPR004520: IPR018948: IPR002917: IPR005225: IPR 006073; KEGG: fba:FIC_01068 GTPase and tRNA-U34 5-formylation enzyme TrmE; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related; SPTR: tRNA modification GTPase mnmE; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: small GTP-binding protein domain; tRNA modification GTPase TrmE; tRNA modification GTPase trme 117101..118492 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000841 YP_004044793.1 CDS Riean_0112 NC_014738.1 118745 118918 D hypothetical protein 118745..118918 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000842 YP_004044794.1 CDS Riean_0113 NC_014738.1 119527 120018 D COGs: COG3193 Uncharacterized protein possibly involved in utilization of glycolate and propanediol; InterPro IPR005624; KEGG: fba:FIC_01070 secreted protein; PFAM: protein of unknown function DUF336; SPTR: Putative secreted protein; PFAM: Domain of unknown function (DUF336); hypothetical protein 119527..120018 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000843 YP_004044795.1 CDS Riean_0114 NC_014738.1 120015 120521 D COGs: COG3193 Uncharacterized protein possibly involved in utilization of glycolate and propanediol; InterPro IPR005624; KEGG: pcr:Pcryo_1418 hypothetical protein; PFAM: protein of unknown function DUF336; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF336); hypothetical protein 120015..120521 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000844 YP_004044796.1 CDS Riean_0115 NC_014738.1 120616 121026 D COGs: COG2351 Transthyretin-like protein; InterPro IPR000895: IPR014306; KEGG: coc:Coch_0235 hydroxyisourate hydrolase; PFAM: Transthyretin; SMART: Transthyretin; SPTR: 5-hydroxyisourate hydrolase; TIGRFAM: hydroxyisourate hydrolase; PFAM: HIUase/Transthyretin family; TIGRFAM: hydroxyisourate hydrolase; hydroxyisourate hydrolase 120616..121026 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000845 YP_004044797.1 CDS Riean_0116 NC_014738.1 121107 121679 R COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: fba:FIC_01685 rhodanese-like domain protein; PFAM: YceI family protein; SPTR: YCE I family protein; PFAM: YceI-like domain; ycei family protein complement(121107..121679) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000846 YP_004044798.1 CDS Riean_0117 NC_014738.1 121750 122820 R KEGG: coc:Coch_1286 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(121750..122820) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000847 YP_004044799.1 CDS Riean_0118 NC_014738.1 122852 123526 R KEGG: edi:EDI_141990 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(122852..123526) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000848 YP_004044800.1 CDS Riean_0119 NC_014738.1 123516 124058 R COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: zpr:ZPR_3828 RNA polymerase ECF-type sigma factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase, sigma-24 subunit, ecf subfamily complement(123516..124058) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000849 YP_004044801.1 CDS Riean_0120 NC_014738.1 124190 125881 R COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: fba:FIC_00756 secreted subtilase family protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: Secreted subtilase family protein; PFAM: Subtilase family; peptidase s8 and s53 subtilisin kexin sedolisin complement(124190..125881) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000850 YP_004044802.1 CDS Riean_0121 NC_014738.1 125936 126544 R InterPro IPR014985; KEGG: fba:FIC_00755 hypothetical protein; PFAM: WbqC-like family protein; SPTR: Putative uncharacterized protein; PFAM: WbqC-like protein family; wbqc-like family protein complement(125936..126544) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000851 YP_004044803.1 CDS Riean_0122 NC_014738.1 126545 128155 R COGs: COG0681 Signal peptidase I; InterPro IPR019759: IPR000223; KEGG: fba:FIC_00754 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: Signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S26; Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type; signal peptidase i complement(126545..128155) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000852 YP_004044804.1 CDS Riean_0123 NC_014738.1 128188 128886 R COGs: COG0289 Dihydrodipicolinate reductase; InterPro IPR011770: IPR000846; KEGG: fba:FIC_00753 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; PRIAM: Dihydrodipicolinate reductase; SPTR: Dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase, N-terminus; Dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase; dihydrodipicolinate reductase complement(128188..128886) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000853 YP_004044805.1 CDS Riean_0124 NC_014738.1 128899 129495 R KEGG: fba:FIC_00752 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(128899..129495) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000854 YP_004044806.1 CDS Riean_0125 NC_014738.1 129500 130390 R COGs: COG1475 transcriptional regulator protein; InterPro IPR003115: IPR004437; KEGG: fba:FIC_00751 chromosome (plasmid) partitioning protein ParB / stage 0 sporulation protein J; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; SPTR: Stage 0 DNA-binding protein; TIGRFAM: parB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins; parb-like partition protein complement(129500..130390) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000855 YP_004044807.1 CDS Riean_0126 NC_014738.1 130417 131190 R COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: fba:FIC_00750 ParA-like ATPase; SPTR: ParA-like ATPase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; para-like ATPase complement(130417..131190) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000856 YP_004044808.1 CDS Riean_0127 NC_014738.1 131358 132209 R KEGG: fba:FIC_00749 TonB family protein; SPTR: TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; tonb family protein complement(131358..132209) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000857 YP_004044809.1 CDS Riean_0128 NC_014738.1 132383 133837 R COGs: COG0795 permease; InterPro IPR005495; KEGG: fba:FIC_01427 hypothetical protein; PFAM: permease YjgP/YjgQ family protein; SPTR: YjgP/YjgQ family permease; PFAM: Predicted permease YjgP/YjgQ family; permease yjgp/yjgq family protein complement(132383..133837) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000858 YP_004044810.1 CDS Riean_0129 NC_014738.1 133921 134676 R KEGG: coc:Coch_0300 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(133921..134676) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000859 YP_004044811.1 CDS Riean_0130 NC_014738.1 134689 135336 R KEGG: fba:FIC_01426 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(134689..135336) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000860 YP_004044812.1 CDS Riean_0131 NC_014738.1 135348 137843 R COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543: IPR018541; KEGG: fba:FIC_01425 cell division protein FtsK; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SPTR: Cell division protein ftsK; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family; cell division protein ftsk/spoiiie complement(135348..137843) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000861 YP_004044813.1 CDS Riean_0132 NC_014738.1 137913 138350 R KEGG: fba:FIC_00889 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); hypothetical protein complement(137913..138350) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000862 YP_004044814.1 CDS Riean_0133 NC_014738.1 138355 139392 D COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR010372: IPR005790; KEGG: fba:FIC_00890 DNA polymerase III delta subunit; PFAM: DNA polymerase III delta; SPTR: DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; DNA polymerase III subunit delta 138355..139392 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000863 YP_004044815.1 CDS Riean_0134 NC_014738.1 139422 140444 D COGs: COG3823 Glutamine cyclotransferase; InterPro IPR007788; KEGG: fba:FIC_01534 glutamine cyclotransferase; PFAM: glutamine cyclotransferase; SPTR: Glutamine cyclotransferase; PFAM: Glutamine cyclotransferase; glutamine cyclotransferase 139422..140444 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000864 YP_004044816.1 CDS Riean_0135 NC_014738.1 140454 141215 D KEGG: fba:FIC_01533 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 140454..141215 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000865 YP_004044817.1 CDS Riean_0136 NC_014738.1 141245 141859 D COGs: COG1428 Deoxynucleoside kinase; InterPro IPR001977: IPR002624; KEGG: fba:FIC_01532 deoxyadenosine kinase; PFAM: deoxynucleoside kinase; Dephospho-CoA kinase; SPTR: Deoxynucleoside kinase; PFAM: Deoxynucleoside kinase; deoxynucleoside kinase 141245..141859 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000866 YP_004044818.1 CDS Riean_0137 NC_014738.1 141933 142496 D KEGG: coc:Coch_0811 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: OmpW family; hypothetical protein 141933..142496 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000867 YP_004044819.1 CDS Riean_0138 NC_014738.1 142613 143278 D KEGG: nma:NMA0664 transposase for IS1016; SPTR: Putative transposase; hypothetical protein 142613..143278 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000868 YP_004044820.1 CDS Riean_0139 NC_014738.1 143441 143962 D COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: fba:FIC_00836 hypothetical protein; PFAM: NLP/P60 protein; SPTR: Possible lipoprotein; PFAM: NlpC/P60 family; nlp/p60 protein 143441..143962 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000869 YP_004044821.1 CDS Riean_0140 NC_014738.1 143978 144790 D COGs: COG2171 Tetrahydrodipicolinate N-succinyltransferase; InterPro IPR001451: IPR018357; KEGG: fba:FIC_00837 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; SPTR: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 143978..144790 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000870 YP_004044822.1 CDS Riean_0141 NC_014738.1 144796 145971 D KEGG: fps:FP1635 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2029); hypothetical protein 144796..145971 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000871 YP_004044823.1 CDS Riean_0142 NC_014738.1 145986 146915 D COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: coc:Coch_0236 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyltransferase; PFAM: Glycosyl transferase family 2; family 2 glycosyl transferase 145986..146915 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000872 YP_004044824.1 CDS Riean_0143 NC_014738.1 146921 147694 D InterPro IPR002509; KEGG: coc:Coch_0234 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; PFAM: Domain of unknown function (DUF3473); Polysaccharide deacetylase; polysaccharide deacetylase 146921..147694 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000873 YP_004044825.1 CDS Riean_0144 NC_014738.1 147700 148794 D COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: fba:FIC_00839 mannosyltransferase; PFAM: glycosyl transferase group 1; SPTR: Mannosyltransferase; PFAM: Glycosyl transferases group 1; group 1 glycosyl transferase 147700..148794 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000874 YP_004044826.1 CDS Riean_0145 NC_014738.1 148886 150124 D COGs: COG0151 Phosphoribosylamine-glycine ligase; InterPro IPR000115: IPR020562: IPR020561: IPR020560: IPR 011761: IPR020559: IPR005479; KEGG: fba:FIC_00555 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; PRIAM: Phosphoribosylamine--glycine ligase; SPTR: Putative uncharacterized protein; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase; phosphoribosylamine--glycine ligase 148886..150124 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000875 YP_004044827.1 CDS Riean_0146 NC_014738.1 150218 151747 D COGs: COG0519 GMP synthase PP-ATPase domain/subunit; InterPro IPR000991: IPR001674: IPR004739: IPR011702: IPR 001317: IPR006220: IPR017926; KEGG: fba:FIC_00556 GMP synthase; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I; SPTR: Bifunctional GMP synthase/glutamine amidotransferase protein; TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit; gmp synthase (glutamine-hydrolyzing) 150218..151747 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000876 YP_004044828.1 CDS Riean_0147 NC_014738.1 151778 152659 D COGs: COG3264 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: rbi:RB2501_08500 hypothetical protein; PFAM: MscS Mechanosensitive ion channel; SPTR: Putative uncharacterized protein; PFAM: Mechanosensitive ion channel; mscs mechanosensitive ion channel 151778..152659 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000877 YP_004044829.1 CDS Riean_0148 NC_014738.1 152704 153942 R COGs: COG4198 conserved hypothetical protein; InterPro IPR008323; KEGG: fba:FIC_01052 protein containing DUF1015; PFAM: Uncharacterised conserved protein UCP033563; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1015); hypothetical protein complement(152704..153942) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000878 YP_004044830.1 CDS Riean_0149 NC_014738.1 153944 154897 R COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139: IPR006140; KEGG: fba:FIC_01053 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; SPTR: D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; D-isomer specific 2-hydroxyacid dehydrogenase naD-binding protein complement(153944..154897) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000879 YP_004044831.1 CDS Riean_0150 NC_014738.1 154913 155974 R COGs: COG1932 Phosphoserine aminotransferase; InterPro IPR000192; KEGG: fba:FIC_01054 phosphoserine aminotransferase; PFAM: aminotransferase class V; PRIAM: Phosphoserine transaminase; SPTR: Phosphoserine transaminase; PFAM: Aminotransferase class-V; TIGRFAM: phosphoserine aminotransferase; phosphoserine transaminase complement(154913..155974) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000880 YP_004044832.1 CDS Riean_0151 NC_014738.1 156055 156405 R InterPro IPR017896: IPR017900; KEGG: fba:FIC_01055 ferredoxin; SPTR: Ferredoxin; PFAM: 4Fe-4S binding domain; ferredoxin complement(156055..156405) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000881 YP_004044833.1 CDS Riean_0152 NC_014738.1 156462 157496 D InterPro IPR008670; KEGG: fba:FIC_01059 hypothetical protein; PFAM: acyl-CoA reductase; SPTR: Putative uncharacterized protein; PFAM: Acyl-CoA reductase (LuxC); acyl-CoA reductase 156462..157496 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000882 YP_004044834.1 CDS Riean_0153 NC_014738.1 157547 158239 D COGs: COG0670 Integral membrane protein interacts with FtsH; KEGG: coc:Coch_0111 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family UPF0005; hypothetical protein 157547..158239 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000883 YP_004044835.1 CDS Riean_0154 NC_014738.1 158312 158968 R KEGG: coc:Coch_1983 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(158312..158968) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000884 YP_004044836.1 CDS Riean_0155 NC_014738.1 159241 159498 R KEGG: pfa:PF10_0190 conserved Plasmodium protein; SPTR: Conserved Plasmodium protein; hypothetical protein complement(159241..159498) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000885 YP_004044837.1 CDS Riean_0156 NC_014738.1 159723 161078 D COGs: COG0232 dGTP triphosphohydrolase; InterPro IPR003607: IPR006261; KEGG: fba:FIC_00990 deoxyguanosinetriphosphate triphosphohydrolase; PRIAM: dGTPase; SMART: metal-dependent phosphohydrolase HD region; SPTR: Deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase, putative; deoxyguanosinetriphosphate triphosphohydrolase 159723..161078 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000886 YP_004044838.1 CDS Riean_0157 NC_014738.1 161136 161435 D KEGG: fba:FIC_01529 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF493); hypothetical protein 161136..161435 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000887 YP_004044839.1 CDS Riean_0158 NC_014738.1 161463 162212 R InterPro IPR018253; KEGG: fba:FIC_01355 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(161463..162212) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000888 YP_004044840.1 CDS Riean_0159 NC_014738.1 162228 163304 D COGs: COG1363 Cellulase M and related protein; InterPro IPR008007; KEGG: fba:FIC_01356 endoglucanase; PFAM: peptidase M42 family protein; SPTR: Possible cellulase; PFAM: M42 glutamyl aminopeptidase; peptidase m42 family protein 162228..163304 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000889 YP_004044841.1 CDS Riean_0160 NC_014738.1 163405 164223 D InterPro IPR019115; KEGG: fba:FIC_02022 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; hypothetical protein 163405..164223 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000890 YP_004044842.1 CDS Riean_0161 NC_014738.1 164291 164806 D COGs: COG1443 Isopentenyldiphosphate isomerase; InterPro IPR000086: IPR011876; KEGG: fba:FIC_00523 NUDIX hydrolase YfcD; PFAM: NUDIX hydrolase; PRIAM: Isopentenyl-diphosphate Delta-isomerase; SPTR: Putative Nudix hydrolase YfcD; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1; PFAM: NUDIX domain; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1; isopentenyl-diphosphate delta-isomerase 164291..164806 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000891 YP_004044843.1 CDS Riean_0162 NC_014738.1 164834 165913 D COGs: COG0404 Glycine cleavage system T protein (aminomethyltransferase); InterPro IPR006222: IPR013977: IPR006223; KEGG: fba:FIC_00521 glycine cleavage system aminomethyltransferase T; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; PRIAM: Aminomethyltransferase; SPTR: Aminomethyltransferase; TIGRFAM: glycine cleavage system T protein; PFAM: Aminomethyltransferase folate-binding domain; Glycine cleavage T-protein C-terminal barrel domain; TIGRFAM: glycine cleavage system T protein; glycine cleavage system t protein 164834..165913 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000892 YP_004044844.1 CDS Riean_0163 NC_014738.1 165992 167521 R COGs: COG0696 Phosphoglyceromutase; InterPro IPR005995: IPR011258: IPR006124: IPR016160; KEGG: fba:FIC_01327 phosphoglyceromutase; PFAM: BPG-independent PGAM domain protein; metalloenzyme domain protein; PRIAM: Phosphoglycerate mutase; SPTR: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; PFAM: Metalloenzyme superfamily; BPG-independent PGAM N-terminus (iPGM_N); TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; phosphoglycerate mutase complement(165992..167521) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000893 YP_004044845.1 CDS Riean_0164 NC_014738.1 167707 170667 D InterPro IPR001440: IPR019734: IPR013026; KEGG: fba:FIC_00998 TPR-domain containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: TPR repeat-containing protein; tetratricopeptide tpr_1 repeat-containing protein 167707..170667 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000894 YP_004044846.1 CDS Riean_0165 NC_014738.1 170698 172467 D KEGG: fba:FIC_00999 TonB-dependent receptor; SPTR: Possible TonB-dependent receptor; tonb-dependent receptor 170698..172467 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000895 YP_004044847.1 CDS Riean_0166 NC_014738.1 172631 172762 D hypothetical protein 172631..172762 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000897 YP_004044848.1 CDS Riean_0167 NC_014738.1 172775 174130 D InterPro IPR002104; KEGG: gfo:GFO_0264 phage integrase family protein; PFAM: integrase family protein; SPTR: Phage integrase family protein; integrase family protein 172775..174130 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000898 YP_004044849.1 CDS Riean_0168 NC_014738.1 174143 175204 D COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: sli:Slin_2152 filamentation induced by cAMP protein Fic; PFAM: filamentation induced by cAMP protein Fic; SPTR: Filamentation induced by cAMP protein Fic; PFAM: Fic/DOC family; filamentation induced by camp protein fic 174143..175204 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000899 YP_004044850.1 CDS Riean_0169 NC_014738.1 175356 176099 D KEGG: ate:Athe_0482 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 175356..176099 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000900 YP_004044851.1 CDS Riean_0170 NC_014738.1 176235 176522 D InterPro IPR010093; KEGG: coc:Coch_0851 DNA binding domain protein, excisionase family; SPTR: DNA binding domain protein, excisionase family; TIGRFAM: DNA binding domain protein, excisionase family; TIGRFAM: DNA binding domain, excisionase family; excisionase family DNA binding domain-containing protein 176235..176522 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000901 YP_004044852.1 CDS Riean_0171 NC_014738.1 176641 177252 D COGs: COG3561 Phage anti-repressor protein; InterPro IPR013557; KEGG: cbk:CLL_A0924 AntB; PFAM: AntA/AntB antirepressor domain protein; SPTR: AntB; PFAM: AntA/AntB antirepressor; anta/antb antirepressor domain-containing protein 176641..177252 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000902 YP_004044853.1 CDS Riean_0172 NC_014738.1 177233 177547 R InterPro IPR001387; KEGG: pdi:BDI_2133 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: DNA-binding protein; PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein complement(177233..177547) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000903 YP_004044854.1 CDS Riean_0173 NC_014738.1 177702 177920 D KEGG: pkn:PKH_113760 SICA antigen (fragment); SPTR: SICA antigen; hypothetical protein 177702..177920 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000904 YP_004044855.1 CDS Riean_0174 NC_014738.1 177932 178240 D KEGG: pdi:BDI_0847 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2693); hypothetical protein 177932..178240 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000905 YP_004044856.1 CDS Riean_0175 NC_014738.1 178247 178684 D KEGG: fjo:Fjoh_4094 RagB/SusD domain-containing protein; SPTR: Putative uncharacterized protein; hypothetical protein 178247..178684 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000906 YP_004044857.1 CDS Riean_0176 NC_014738.1 178697 179227 D KEGG: edi:EDI_047040 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 178697..179227 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000907 YP_004044858.1 CDS Riean_0177 NC_014738.1 179394 179816 D KEGG: pop:POPTR_581396 hypothetical protein; SPTR: Predicted protein; hypothetical protein 179394..179816 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000908 YP_004044859.1 CDS Riean_0178 NC_014738.1 179879 181261 D KEGG: sli:Slin_5863 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 179879..181261 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000909 YP_004044860.1 CDS Riean_0179 NC_014738.1 181764 182045 D KEGG: cfa:611783 EF-hand calcium binding domain 2; SPTR: Putative uncharacterized protein; hypothetical protein 181764..182045 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000910 YP_004044861.1 CDS Riean_0180 NC_014738.1 182616 183440 D COGs: COG2996 conserved hypothetical protein; InterPro IPR014464; KEGG: fba:FIC_01590 hypothetical protein; SPTR: Nucleic acid binding protein; hypothetical protein 182616..183440 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000911 YP_004044862.1 CDS Riean_0181 NC_014738.1 183443 183796 D COGs: COG1393 Arsenate reductase and related protein glutaredoxin family; InterPro IPR006660; KEGG: fba:FIC_00519 hypothetical protein; PFAM: arsenate reductase and related; SPTR: Possible arsenate reductase; PFAM: ArsC family; arsenate reductase 183443..183796 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000912 YP_004044863.1 CDS Riean_0182 NC_014738.1 183846 184382 R KEGG: pjd:Pjdr2_3750 serine/threonine protein kinase with PASTA sensor(s); SPTR: Putative uncharacterized protein; hypothetical protein complement(183846..184382) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000913 YP_004044864.1 CDS Riean_0183 NC_014738.1 184411 187269 R KEGG: chu:CHU_2463 UDP-N-acetylglucosamine enolpyruvyl transferase; SPTR: Putative uncharacterized protein; hypothetical protein complement(184411..187269) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000914 YP_004044865.1 CDS Riean_0184 NC_014738.1 187338 187928 R InterPro IPR000595; KEGG: fjo:Fjoh_3107 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; cyclic nucleotide-binding protein complement(187338..187928) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000915 YP_004044866.1 CDS Riean_0185 NC_014738.1 188086 188514 D KEGG: vpa:VPA0320 lipoprotein; SPTR: Putative lipoprotein; PFAM: Uncharacterized lipoprotein NlpE involved in copper resistance; hypothetical protein 188086..188514 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000916 YP_004044867.1 CDS Riean_0186 NC_014738.1 188538 191336 R KEGG: fba:FIC_00648 aminopeptidase N; SPTR: Aminopeptidase N; aminopeptidase n complement(188538..191336) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000917 YP_004044868.1 CDS Riean_0187 NC_014738.1 191429 192841 R COGs: COG0461 Orotate phosphoribosyltransferase; InterPro IPR000836: IPR001754: IPR004467: IPR014732; KEGG: fba:FIC_01694 orotate phosphoribosyltransferase; PFAM: Orotidine 5'-phosphate decarboxylase; phosphoribosyltransferase; PRIAM: Orotate phosphoribosyltransferase., Orotidine-5'-phosphate decarboxylase; SPTR: Orotate phosphoribosyltransferase; TIGRFAM: orotidine 5'-phosphate decarboxylase; orotate phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 1; orotate phosphoribosyltransferase; orotidine 5'-phosphate decarboxylase complement(191429..192841) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000918 YP_004044869.1 CDS Riean_0188 NC_014738.1 193258 197685 D InterPro IPR000209: IPR000601; KEGG: sli:Slin_5991 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; PKD domain containing protein; SMART: PKD domain containing protein; SPTR: Peptidase; PFAM: Subtilase family; peptidase s8 and s53 subtilisin kexin sedolisin 193258..197685 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000919 YP_004044870.1 CDS Riean_0190 NC_014738.1 199207 200196 D COGs: COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; InterPro IPR000728: IPR010918: IPR004733; KEGG: fba:FIC_00552 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; PRIAM: Phosphoribosylformylglycinamidine cyclo-ligase; SPTR: Phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylaminoimidazole synthetase; phosphoribosylformylglycinamidine cyclo-ligase 199207..200196 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000921 YP_004044871.1 CDS Riean_0191 NC_014738.1 200209 200778 D COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; InterPro IPR002376: IPR004607; KEGG: fba:FIC_00553 phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; SPTR: Phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase 200209..200778 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000922 YP_004044872.1 CDS Riean_0192 NC_014738.1 200852 202600 R COGs: COG0173 Aspartyl-tRNA synthetase; InterPro IPR004365: IPR004364: IPR004115: IPR004524: IPR 002312: IPR006195; KEGG: fba:FIC_01984 aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein; SPTR: Aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type; aspartyl-tRNA synthetase complement(200852..202600) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000923 YP_004044873.1 CDS Riean_0193 NC_014738.1 202768 204438 D COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR000583: IPR001962: IPR006426: IPR017932; KEGG: cat:CA2559_06815 asparagine synthetase B, glutamine-hydrolyzing protein; PFAM: asparagine synthase; glutamine amidotransferase class-II; SPTR: Asparagine synthetase B; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); asparagine synthase 202768..204438 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000924 YP_004044874.1 CDS Riean_0195 NC_014738.1 205876 206811 R COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR002942: IPR006145: IPR000748: IPR018496; KEGG: fba:FIC_00969 ribosomal large subunit pseudouridine synthase B; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; SPTR: Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase; ribosomal large subunit pseudouridine synthase b complement(205876..206811) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000926 YP_004044875.1 CDS Riean_0196 NC_014738.1 206945 207856 D COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR003593: IPR017871; KEGG: mmr:Mmar10_2631 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC superfamily ATP binding cassette transporter, ABC protein; PFAM: ABC transporter; ABC transporter 206945..207856 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000927 YP_004044876.1 CDS Riean_0197 NC_014738.1 207861 211517 D COGs: COG0308 Aminopeptidase N; KEGG: sml:Smlt1184 transmembrane protein; SPTR: Aminopeptidase N; transmembrane protein 207861..211517 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000928 YP_004044877.1 CDS Riean_0198 NC_014738.1 211572 212237 D KEGG: nma:NMA0664 transposase for IS1016; SPTR: Putative transposase; hypothetical protein 211572..212237 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000929 YP_004044878.1 CDS Riean_0199 NC_014738.1 212415 214631 R COGs: COG2838 Monomeric isocitrate dehydrogenase; InterPro IPR004436; KEGG: fba:FIC_00973 isocitrate dehydrogenase (NADP); PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; PRIAM: Isocitrate dehydrogenase (NADP(+)); SPTR: Isocitrate dehydrogenase [NADP]; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Monomeric isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, monomeric type; isocitrate dehydrogenase, nADP-dependent complement(212415..214631) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000930 YP_004044879.1 CDS Riean_0200 NC_014738.1 215173 216930 D InterPro IPR000209; KEGG: sli:Slin_5991 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; SPTR: Peptidase; PFAM: Subtilase family; peptidase s8 and s53 subtilisin kexin sedolisin 215173..216930 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000931 YP_004044880.1 CDS Riean_0201 NC_014738.1 216930 219602 D InterPro IPR000601: IPR011628; KEGG: mba:Mbar_A0810 surface layer protein; PFAM: PKD domain containing protein; Cleaved adhesin domain protein; SMART: PKD domain containing protein; SPTR: Putative uncharacterized protein; PFAM: Cleaved Adhesin Domain; PKD domain; pkd domain containing protein 216930..219602 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000932 YP_004044881.1 CDS Riean_0202 NC_014738.1 219915 220523 D COGs: COG0353 Recombinational DNA repair protein (RecF pathway); InterPro IPR000093: IPR015967: IPR006171: IPR006154; KEGG: fba:FIC_01556 recombination protein RecR; PFAM: TOPRIM domain-containing protein; Zinc finger C4-type, RecR; SMART: Toprim sub domain-containing protein; SPTR: Recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR; recombination protein recr 219915..220523 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000933 YP_004044882.1 CDS Riean_0203 NC_014738.1 220530 221387 D COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: fba:FIC_01554 glycosyl transferase, group 2 family protein; PFAM: glycosyl transferase family 2; SPTR: Possible glycosyl transferase; PFAM: Glycosyl transferase family 2; family 2 glycosyl transferase 220530..221387 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000934 YP_004044883.1 CDS Riean_0204 NC_014738.1 221426 221788 R InterPro IPR004692; KEGG: fba:FIC_01553 hypothetical protein; PFAM: Preprotein translocase SecG subunit; SPTR: Putative uncharacterized protein; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit; protein translocase subunit secg complement(221426..221788) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000935 YP_004044884.1 CDS Riean_0205 NC_014738.1 221930 223972 R COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: fba:FIC_01549 secreted peptidase, family M16; PFAM: peptidase M16 domain protein; SPTR: Secreted peptidase, family M16; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16); peptidase m16 domain-containing protein complement(221930..223972) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000936 YP_004044885.1 CDS Riean_0206 NC_014738.1 223985 225298 R COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: fba:FIC_01548 probable peptidase; PFAM: peptidase M16 domain protein; SPTR: Probable peptidase; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16); peptidase m16 domain-containing protein complement(223985..225298) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000937 YP_004044886.1 CDS Riean_0207 NC_014738.1 225409 225534 D hypothetical protein 225409..225534 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000938 YP_004044887.1 CDS Riean_0208 NC_014738.1 225908 228247 D COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212: IPR014016: IPR014017; KEGG: fba:FIC_01545 ATP-dependent DNA helicase UvrD/PcrA; PFAM: UvrD/REP helicase; SPTR: ATP-dependent DNA helicase UvrD/PcrA; PFAM: UvrD/REP helicase; uvrd/rep helicase 225908..228247 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000939 YP_004044888.1 CDS Riean_0209 NC_014738.1 228302 231109 D COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterPro IPR020046: IPR020047: IPR002562: IPR001098: IPR 002421: IPR008918: IPR018320: IPR002298: IPR019760; KEGG: fba:FIC_00724 DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; 3'-5' exonuclease; DNA-directed DNA polymerase; SPTR: DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: 3'-5' exonuclease; 5'-3' exonuclease, C-terminal SAM fold; DNA polymerase family A; 5'-3' exonuclease, N-terminal resolvase-like domain; TIGRFAM: DNA polymerase I; DNA polymerase i 228302..231109 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000940 YP_004044889.1 CDS Riean_0210 NC_014738.1 231190 231879 D InterPro IPR000758; KEGG: fps:FP2138 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 231190..231879 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000941 YP_004044890.1 CDS Riean_0211 NC_014738.1 231958 232638 D KEGG: bvu:BVU_1201 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 231958..232638 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000942 YP_004044891.1 CDS Riean_0212 NC_014738.1 232682 233527 D COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: fba:FIC_00726 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Glycosyltransferase; PFAM: Glycosyl transferase family 2; family 2 glycosyl transferase 232682..233527 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000943 YP_004044892.1 CDS Riean_0213 NC_014738.1 233546 234499 D COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR003714; KEGG: fba:FIC_00816 phosphate starvation-inducible protein PhoH, predicted ATPase; PFAM: PhoH family protein; SPTR: Phosphate starvation-inducible protein PhoH; PFAM: PhoH-like protein; phoh family protein 233546..234499 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000944 YP_004044893.1 CDS Riean_0214 NC_014738.1 234543 235418 R COGs: COG1159 GTPase; InterPro IPR005662: IPR002917: IPR004044: IPR005225; KEGG: fba:FIC_01336 GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; SPTR: GTP-binding protein era homolog; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: KH domain; GTPase of unknown function; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain; GTP-binding protein era complement(234543..235418) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000945 YP_004044894.1 CDS Riean_0215 NC_014738.1 235523 235879 R COGs: COG0335 Ribosomal protein L19; InterPro IPR001857; KEGG: fba:FIC_00871 50S ribosomal protein L19; PFAM: ribosomal protein L19; SPTR: 50S ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: Ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type; 50S ribosomal protein l19p complement(235523..235879) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000946 YP_004044895.1 CDS Riean_0216 NC_014738.1 236133 237809 D COGs: COG2759 Formyltetrahydrofolate synthetase; InterPro IPR000559: IPR020628; KEGG: coc:Coch_0451 formate--tetrahydrofolate ligase; PFAM: formate-tetrahydrofolate ligase FTHFS; PRIAM: Formate--tetrahydrofolate ligase; SPTR: Formate--tetrahydrofolate ligase; PFAM: Formate--tetrahydrofolate ligase; formate-tetrahydrofolate ligase 236133..237809 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000947 YP_004044896.1 CDS Riean_0217 NC_014738.1 237820 238464 D InterPro IPR012506; KEGG: fjo:Fjoh_3510 YhhN family protein; PFAM: YhhN family protein; SPTR: YhhN family protein; PFAM: YhhN-like protein; yhhn family protein 237820..238464 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000948 YP_004044897.1 CDS Riean_0218 NC_014738.1 238545 240362 R InterPro IPR004843; KEGG: pjd:Pjdr2_4678 PA14 domain protein; PFAM: metallophosphoesterase; SPTR: PA14 domain protein; PFAM: Calcineurin-like phosphoesterase; metallophosphoesterase complement(238545..240362) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000949 YP_004044898.1 CDS Riean_0219 NC_014738.1 240694 241548 R COGs: COG2820 Uridine phosphorylase; InterPro IPR000845; KEGG: fba:FIC_02400 purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; SPTR: Purine nucleoside phosphorylase; PFAM: Phosphorylase superfamily; purine or other phosphorylase family 1 complement(240694..241548) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000950 YP_004044899.1 CDS Riean_0220 NC_014738.1 241567 241896 R COGs: COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related protein; InterPro IPR001950: IPR017228; KEGG: fba:FIC_02401 translation initiation factor SUI1-related protein; PFAM: translation initiation factor SUI1; SPTR: Translation initiation factor SUI1; PFAM: Translation initiation factor SUI1; TIGRFAM: translation initation factor SUI1, putative, prokaryotic; translation initiation factor 1 (eif-1/sui1) complement(241567..241896) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000951 YP_004044900.1 CDS Riean_0221 NC_014738.1 242025 243599 R COGs: COG1418 HD superfamily hydrolase; InterPro IPR017705: IPR018111: IPR006674: IPR004087: IPR 003607: IPR006675: IPR004088; KEGG: fba:FIC_00518 phosphodiesterase; PFAM: metal-dependent phosphohydrolase HD sub domain; K Homology, type 1, subgroup; SMART: metal-dependent phosphohydrolase HD region; KH domain protein; SPTR: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: KH domain; HD domain; Domain of unknown function (DUF3552); TIGRFAM: conserved hypothetical protein YmdA/YtgF; uncharacterized domain HDIG; metal dependent phosphohydrolase complement(242025..243599) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000952 YP_004044901.1 CDS Riean_0222 NC_014738.1 243863 244141 R KEGG: fba:FIC_00517 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Cell division protein ZapA; hypothetical protein complement(243863..244141) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000953 YP_004044902.1 CDS Riean_0223 NC_014738.1 244141 244443 R KEGG: fba:FIC_00516 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(244141..244443) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000954 YP_004044903.1 CDS Riean_0224 NC_014738.1 244697 246556 D COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterPro IPR003594: IPR013506: IPR001241: IPR000565: IPR 018522; KEGG: fba:FIC_01276 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; SPTR: Possible DNA topoisomerase (ATP-hydrolyzing); PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; DNA topoisomerase type IIa subunit B domain-containing protein 244697..246556 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000955 YP_004044904.1 CDS Riean_0225 NC_014738.1 246576 247070 D KEGG: gfo:GFO_1480 membrane protein; SPTR: Putative uncharacterized protein; hypothetical protein 246576..247070 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000956 YP_004044905.1 CDS Riean_0226 NC_014738.1 247073 249646 D COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR002205; KEGG: fba:FIC_01277 DNA topoisomerase IV subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA gyrase/topoisomerase IV subunit A; SPTR: Topoisomerase IV subunit A; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA topoisomerase 247073..249646 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000957 YP_004044906.1 CDS Riean_0227 NC_014738.1 249688 251895 D COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterPro IPR006674: IPR007685: IPR004095: IPR002912: IPR 003607: IPR004811; KEGG: fba:FIC_01539 GTP pyrophosphokinase; PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domain-containing protein; amino aciD-binding ACT domain protein; PRIAM: GTP diphosphokinase; SMART: metal-dependent phosphohydrolase HD region; SPTR: Possible GTP diphosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: HD domain; TGS domain; Region found in RelA / SpoT proteins; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family; (p)ppGpp synthetase I SpoT/RelA 249688..251895 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000958 YP_004044907.1 CDS Riean_0228 NC_014738.1 251926 253278 D COGs: COG3004 Na+/H+ antiporter; InterPro IPR004670; KEGG: cpi:Cpin_4662 Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; SPTR: Na+/H+ antiporter NhaA; TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter 1; TIGRFAM: Na+/H+ antiporter NhaA; TC 2.A.33.1.1; NhaA family sodium/proton antiporter 251926..253278 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000959 YP_004044908.1 CDS Riean_0229 NC_014738.1 253431 255119 R COGs: COG0405 Gamma-glutamyltransferase; InterPro IPR000101; KEGG: fba:FIC_01512 gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; PRIAM: Gamma-glutamyltransferase; SPTR: Gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(253431..255119) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000960 YP_004044909.1 CDS Riean_0230 NC_014738.1 255285 255977 R KEGG: sli:Slin_3643 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(255285..255977) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000961 YP_004044910.1 CDS Riean_0231 NC_014738.1 256032 256571 R KEGG: mmw:Mmwyl1_1690 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(256032..256571) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000962 YP_004044911.1 CDS Riean_0232 NC_014738.1 256640 257374 R COGs: COG0159 Tryptophan synthase alpha chain; InterPro IPR002028: IPR018204; KEGG: fba:FIC_01491 tryptophan synthase alpha chain; PFAM: tryptophan synthase alpha chain; PRIAM: Tryptophan synthase; SPTR: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit; tryptophan synthase subunit alpha complement(256640..257374) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000963 YP_004044912.1 CDS Riean_0233 NC_014738.1 257385 257684 R KEGG: fps:FP1118 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(257385..257684) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000964 YP_004044913.1 CDS Riean_0234 NC_014738.1 257688 258872 R COGs: COG0133 Tryptophan synthase beta chain; InterPro IPR001926: IPR006654: IPR006653; KEGG: fba:FIC_01492 tryptophan synthase subunit beta; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: Tryptophan synthase; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: tryptophan synthase, beta subunit; tryptophan synthase subunit beta complement(257688..258872) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000965 YP_004044914.1 CDS Riean_0235 NC_014738.1 258885 259523 R COGs: COG0135 Phosphoribosylanthranilate isomerase; InterPro IPR001240; KEGG: fba:FIC_01493 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); PRIAM: Phosphoribosylanthranilate isomerase; SPTR: N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; phosphoribosylanthranilate isomerase complement(258885..259523) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000966 YP_004044915.1 CDS Riean_0236 NC_014738.1 259527 260303 R COGs: COG0134 Indole-3-glycerol phosphate synthase; InterPro IPR013798: IPR001468; KEGG: fba:FIC_01494 indole-3-glycerol phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; PRIAM: Indole-3-glycerol-phosphate synthase; SPTR: Indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; Indole-3-glycerol phosphate synthase complement(259527..260303) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000967 YP_004044916.1 CDS Riean_0237 NC_014738.1 260304 260882 R COGs: COG2818 3-methyladenine DNA glycosylase; InterPro IPR005019: IPR004597; KEGG: zpr:ZPR_4445 DNA-3-methyladenine glycosylase; PFAM: methyladenine glycosylase; PRIAM: DNA-3-methyladenine glycosylase I; SPTR: DNA-3-methyladenine glycosidase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: Methyladenine glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase I; DNA-3-methyladenine glycosylase i complement(260304..260882) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000968 YP_004044917.1 CDS Riean_0238 NC_014738.1 260882 261868 R COGs: COG0547 Anthranilate phosphoribosyltransferase; InterPro IPR005940: IPR017459: IPR000312; KEGG: fba:FIC_01495 anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; PRIAM: Anthranilate phosphoribosyltransferase; SPTR: Anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: Glycosyl transferase family, a/b domain; Glycosyl transferase family, helical bundle domain; TIGRFAM: anthranilate phosphoribosyltransferase; anthranilate phosphoribosyltransferase complement(260882..261868) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000969 YP_004044918.1 CDS Riean_0239 NC_014738.1 261894 262466 R COGs: COG0512 Anthranilate/para-aminobenzoate synthase component II; InterPro IPR000991: IPR006221: IPR006220: IPR011702: IPR 001317: IPR017926; KEGG: fba:FIC_01496 anthranilate synthase, amidotransferase component; PFAM: glutamine amidotransferase class-I; SPTR: Anthranilate synthase, amidotransferase component; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase; anthranilate synthase, component ii complement(261894..262466) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000970 YP_004044919.1 CDS Riean_0240 NC_014738.1 262485 263900 R COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR006805: IPR015890: IPR019999; KEGG: fba:FIC_01497 anthranilate synthase, aminase component; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; SPTR: Anthranilate synthase, aminase component; PFAM: chorismate binding enzyme; Anthranilate synthase component I, N terminal region; chorismate binding protein complement(262485..263900) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000971 YP_004044920.1 CDS Riean_0241 NC_014738.1 264262 266187 D COGs: COG0441 Threonyl-tRNA synthetase; InterPro IPR004095: IPR012947: IPR002314: IPR004154: IPR 002320: IPR018158: IPR006195; KEGG: fba:FIC_00854 threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; TGS domain-containing protein; Anticodon-binding domain protein; SPTR: Threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TGS domain; TIGRFAM: threonyl-tRNA synthetase; ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase 264262..266187 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000972 YP_004044921.1 CDS Riean_0242 NC_014738.1 266278 266775 D COGs: COG0290 Translation initiation factor 3 (IF-3); InterPro IPR019814: IPR019815: IPR001288; KEGG: fba:FIC_00853 translation initiation factor 3; PFAM: Translation initiation factor 3-like; SPTR: Translation initiation factor 3; TIGRFAM: translation initiation factor IF-3; PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3; translation initiation factor 3 (bif-3) 266278..266775 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000973 YP_004044922.1 CDS Riean_0243 NC_014738.1 266787 267428 D KEGG: tme:Tmel_1305 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 266787..267428 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000974 YP_004044923.1 CDS Riean_0244 NC_014738.1 267468 267665 D InterPro IPR001706: IPR021137: IPR018265; KEGG: fba:FIC_00851 LSU ribosomal protein L35p; PFAM: Ribosomal protein L35; SPTR: 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35; 50S ribosomal protein l35p 267468..267665 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000975 YP_004044924.1 CDS Riean_0245 NC_014738.1 267789 268133 D COGs: COG0292 Ribosomal protein L20; InterPro IPR005813; KEGG: fba:FIC_00850 LSU ribosomal protein L20p; PFAM: ribosomal protein L20; SPTR: 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: Ribosomal protein L20; TIGRFAM: ribosomal protein L20; 50S ribosomal protein l20p 267789..268133 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000976 YP_004044925.1 CDS Riean_0246 NC_014738.1 268252 269145 D COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176: IPR006108: IPR006180; KEGG: fba:FIC_00925 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; SPTR: 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; 3-hydroxyacyl-CoA dehydrogenase naD-binding protein 268252..269145 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000977 YP_004044926.1 CDS Riean_0247 NC_014738.1 269231 269470 D KEGG: fba:FIC_00923 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 269231..269470 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000978 YP_004044927.1 CDS Riean_0248 NC_014738.1 269652 273356 D COGs: COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain; InterPro IPR010918: IPR010141: IPR017926; KEGG: fba:FIC_00791 phosphoribosylformylglycinamidine synthase, synthetase subunit; PFAM: AIR synthase related protein domain protein; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: Phosphoribosylformylglycinamidine synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase, clade II; phosphoribosylformylglycinamidine synthase 269652..273356 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000979 YP_004044928.1 CDS Riean_0249 NC_014738.1 273407 274126 D COGs: COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; InterPro IPR001636: IPR018236; KEGG: fba:FIC_00794 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; PRIAM: Phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: Phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 273407..274126 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000980 YP_004044929.1 CDS Riean_0250 NC_014738.1 274155 275630 D COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; InterPro IPR000583: IPR000836: IPR005854: IPR017932; KEGG: fba:FIC_00795 amidophosphoribosyltransferase; PFAM: phosphoribosyltransferase; glutamine amidotransferase class-II; SPTR: Amidophosphoribosyltransferase; TIGRFAM: amidophosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; Glutamine amidotransferases class-II; TIGRFAM: amidophosphoribosyltransferase; amidophosphoribosyltransferase 274155..275630 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000981 YP_004044930.1 CDS Riean_0251 NC_014738.1 275735 276568 D COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR000005: IPR018060; KEGG: sli:Slin_2506 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; transcriptional regulator, arac family 275735..276568 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000982 YP_004044931.1 CDS Riean_0252 NC_014738.1 276679 277383 D COGs: COG3485 Protocatechuate 3 4-dioxygenase beta subunit; InterPro IPR000627; KEGG: fjo:Fjoh_1680 intradiol ring-cleavage dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; SPTR: Intradiol ring-cleavage dioxygenase; PFAM: Dioxygenase; intradiol ring-cleavage dioxygenase 276679..277383 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000983 YP_004044932.1 CDS Riean_0253 NC_014738.1 277468 279168 R COGs: COG1190 Lysyl-tRNA synthetase (class II); InterPro IPR002313: IPR004365: IPR004364: IPR018149: IPR 006195; KEGG: fba:FIC_01499 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; SPTR: Lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial; lysyl-tRNA synthetase complement(277468..279168) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000984 YP_004044933.1 CDS Riean_0254 NC_014738.1 279305 280348 R COGs: COG1858 Cytochrome c peroxidase; InterPro IPR004852: IPR009056; KEGG: tal:Thal_0068 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; PRIAM: Cytochrome-c peroxidase; SPTR: Cytochrome-c peroxidase; PFAM: Cytochrome c; Di-haem cytochrome c peroxidase; cytochrome-c peroxidase complement(279305..280348) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000985 YP_004044934.1 CDS Riean_0255 NC_014738.1 280556 281845 R COGs: COG0104 Adenylosuccinate synthase; InterPro IPR001114: IPR018220; KEGG: fba:FIC_00747 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; PRIAM: Adenylosuccinate synthase; SMART: adenylosuccinate synthetase; SPTR: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase; adenylosuccinate synthetase complement(280556..281845) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000986 YP_004044935.1 CDS Riean_0256 NC_014738.1 281971 282486 D InterPro IPR017936; KEGG: fba:FIC_00731 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; SPTR: Thioredoxin family protein; manually curated; PFAM: AhpC/TSA family; alkyl hydroperoxide reductase/thiol specific antioxidant/mal allergen 281971..282486 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000987 YP_004044936.1 CDS Riean_0257 NC_014738.1 282562 282786 D KEGG: fba:FIC_01044 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 282562..282786 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000988 YP_004044937.1 CDS Riean_0258 NC_014738.1 283012 284817 R COGs: COG1217 membrane GTPase involved in stress response; InterPro IPR000795: IPR004161: IPR000640: IPR005225: IPR 006298; KEGG: fba:FIC_01264 GTP-binding protein TypA/BipA; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; SPTR: GTP-binding protein; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain; GTP-binding protein typa complement(283012..284817) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000990 YP_004044938.1 CDS Riean_0259 NC_014738.1 285100 285339 R KEGG: fba:FIC_01265 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF465); hypothetical protein complement(285100..285339) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000991 YP_004044939.1 CDS Riean_0260 NC_014738.1 285485 286105 D COGs: COG0572 Uridine kinase; InterPro IPR000764: IPR017975; KEGG: fba:FIC_00953 uridine kinase; SPTR: Uridine kinase; TIGRFAM: uridine kinase; PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: uridine kinase; uridine kinase 285485..286105 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000992 YP_004044940.1 CDS Riean_0261 NC_014738.1 286102 286470 D InterPro IPR007060; KEGG: fba:FIC_00954 hypothetical protein; PFAM: Septum formation initiator; SPTR: Putative uncharacterized protein; PFAM: Septum formation initiator; septum formation initiator 286102..286470 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000993 YP_004044941.1 CDS Riean_0262 NC_014738.1 286486 287433 D COGs: COG1162 GTPase; InterPro IPR004881: IPR010914; KEGG: fba:FIC_01360 ribosome-associated GTPase; PFAM: GTPase EngC; SPTR: GTP-binding protein; TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: Protein of unknown function, DUF258; TIGRFAM: ribosome small subunit-dependent GTPase A; ribosome small subunit-dependent GTPase a 286486..287433 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000994 YP_004044942.1 CDS Riean_0263 NC_014738.1 287436 288500 R COGs: COG2377 molecular chaperone distantly related to HSP70-fold metalloprotease; InterPro IPR005338; KEGG: fps:FP1927 anhydro-N-acetylmuramic acid kinase; PFAM: protein of unknown function UPF0075; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0075); hypothetical protein complement(287436..288500) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000995 YP_004044943.1 CDS Riean_0264 NC_014738.1 288624 289106 R KEGG: ckl:CKL_0943 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(288624..289106) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000996 YP_004044944.1 CDS Riean_0265 NC_014738.1 289149 289250 R hypothetical protein complement(289149..289250) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000997 YP_004044945.1 CDS Riean_0266 NC_014738.1 289301 290056 R COGs: COG0149 Triosephosphate isomerase; InterPro IPR000652: IPR020861; KEGG: fba:FIC_01463 triosephosphate isomerase; PFAM: triosephosphate isomerase; PRIAM: Triose-phosphate isomerase; SPTR: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase; PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase; triosephosphate isomerase complement(289301..290056) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000998 YP_004044946.1 CDS Riean_0267 NC_014738.1 290075 290425 R KEGG: fba:FIC_01461 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(290075..290425) Riemerella anatipestifer ATCC 11845 = DSM 15868 10000999 YP_004044947.1 CDS Riean_0268 NC_014738.1 290463 291536 R InterPro IPR011637; KEGG: fba:FIC_01460 hypothetical protein; PFAM: DoxX family protein; SPTR: Putative uncharacterized protein; doxx family protein complement(290463..291536) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001000 YP_004044948.1 CDS Riean_0269 NC_014738.1 291529 292080 R InterPro IPR011630; KEGG: fba:FIC_01459 hypothetical protein; PFAM: protein of unknown function DUF1599; SPTR: Putative uncharacterized protein; PFAM: Domain of Unknown Function (DUF1599); hypothetical protein complement(291529..292080) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001001 YP_004044949.1 CDS Riean_0270 NC_014738.1 292255 292563 D InterPro IPR001845; KEGG: cli:Clim_2026 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Putative transcriptional regulator, ArsR family protein; PFAM: Bacterial regulatory protein, arsR family; ArsR family transcriptional regulator 292255..292563 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001002 YP_004044950.1 CDS Riean_0271 NC_014738.1 292597 293691 D KEGG: cpi:Cpin_2592 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 292597..293691 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001003 YP_004044951.1 CDS Riean_0272 NC_014738.1 293797 294267 D KEGG: fjo:Fjoh_4238 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 293797..294267 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001004 YP_004044952.1 CDS Riean_0275 NC_014738.1 294953 296317 R COGs: COG0541 Signal recognition particle GTPase; InterPro IPR013822: IPR000897: IPR004125: IPR003593: IPR 004780; KEGG: fba:FIC_00821 signal recognition particle, subunit Ffh SRP54; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; Signal peptide binding (SRP54) M- domain protein; SMART: AAA ATPase; SPTR: Signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein; signal recognition particle subunit ffh/srp54 (srp54) complement(294953..296317) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001007 YP_004044953.1 CDS Riean_0276 NC_014738.1 296393 297079 R COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: fba:FIC_00496 tRNA (guanosine18-2'-O-) -methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: tRNA/rRNA methyltransferase (SpoU); PFAM: SpoU rRNA Methylase family; tRNA/rRNA methyltransferase (spou) complement(296393..297079) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001008 YP_004044954.1 CDS Riean_0277 NC_014738.1 297076 297921 R COGs: COG2890 Methylase of polypeptide chain release factors; InterPro IPR007848: IPR004556: IPR019874: IPR002052; KEGG: fba:FIC_00834 protoporphyrinogen oxidase; PFAM: methyltransferase small; SPTR: N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: Methyltransferase small domain; TIGRFAM: HemK family methylases; protein-(glutamine-N5) methyltransferase, release factor-specific; protein-(glutamine-n5) methyltransferase, release factor-specific complement(297076..297921) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001009 YP_004044955.1 CDS Riean_0278 NC_014738.1 297921 298679 R COGs: COG3022 conserved hypothetical protein; InterPro IPR005583; KEGG: fba:FIC_01189 UPF0246 protein YaaA; PFAM: protein of unknown function DUF328; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF328); hypothetical protein complement(297921..298679) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001010 YP_004044956.1 CDS Riean_0279 NC_014738.1 298802 299785 D KEGG: bth:BT_3110 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 298802..299785 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001011 YP_004044957.1 CDS Riean_0280 NC_014738.1 299790 302468 D KEGG: bth:BT_3111 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 299790..302468 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001012 YP_004044958.1 CDS Riean_0281 NC_014738.1 302701 303234 D KEGG: lac:LBA0097 hypothetical protein; SPTR: Putative uncharacterized protein lemA; hypothetical protein 302701..303234 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001013 YP_004044959.1 CDS Riean_0282 NC_014738.1 303334 304848 R COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); InterPro IPR011607: IPR013982: IPR002695; KEGG: fba:FIC_00554 IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; PRIAM: Phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme formylation region; SPTR: IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; imp cyclohydrolase; phosphoribosylaminoimidazolecarboxamide formyltransferase complement(303334..304848) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001014 YP_004044960.1 CDS Riean_0283 NC_014738.1 304868 305452 R KEGG: fba:FIC_00383 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(304868..305452) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001015 YP_004044961.1 CDS Riean_0284 NC_014738.1 305476 308298 R COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR003439: IPR004602: IPR017871; KEGG: fba:FIC_00654 excinuclease ABC subunit A; PFAM: ABC transporter related; SPTR: Excision endonuclease subunit A; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit; excinuclease ABC, a subunit complement(305476..308298) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001016 YP_004044962.1 CDS Riean_0285 NC_014738.1 308425 309369 R COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: rbi:RB2501_06835 membrane protease protein family protein; PFAM: band 7 protein; SMART: band 7 protein; SPTR: Membrane protease protein family protein; PFAM: SPFH domain / Band 7 family; hypothetical protein complement(308425..309369) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001017 YP_004044963.1 CDS Riean_0286 NC_014738.1 309700 311481 D COGs: COG0539 Ribosomal protein S1; InterPro IPR003029: IPR000110; KEGG: fba:FIC_00867 30S ribosomal protein S1; PFAM: RNA binding S1 domain protein; SPTR: 30S ribosomal protein S1; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1; 30S ribosomal protein s1p 309700..311481 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001018 YP_004044964.1 CDS Riean_0287 NC_014738.1 311699 312865 R COGs: COG3579 Aminopeptidase C; InterPro IPR004134: IPR000169; KEGG: fjo:Fjoh_1152 peptidase C1B, bleomycin hydrolase; PFAM: peptidase C1B bleomycin hydrolase; SPTR: Aminopeptidase C (Bleomycin hydrolase); PFAM: Peptidase C1-like family; peptidase c1b bleomycin hydrolase complement(311699..312865) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001019 YP_004044965.1 CDS Riean_0288 NC_014738.1 312920 313771 R COGs: COG1597 Sphingosine kinase; InterPro IPR001206: IPR005218; KEGG: fba:FIC_01503 transcription regulator (contains diacylglycerol kinase catalytic domain); PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; SPTR: Transcription regulator (Contains diacylglycerol kinase catalytic domain); PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: lipid kinase, YegS/Rv2252/BmrU family; diacylglycerol kinase catalytic subunit complement(312920..313771) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001020 YP_004044966.1 CDS Riean_0289 NC_014738.1 313806 314528 R COGs: COG0321 Lipoate-protein ligase B; InterPro IPR000544: IPR004143: IPR020605; KEGG: fba:FIC_01490 Octanoate-[acyl-carrier-protein]-protein-N-octan oyltransferase; PFAM: biotin/lipoate A/B protein ligase; PRIAM: Lipoyl(octanoyl) transferase; SPTR: Octanoyltransferase; TIGRFAM: lipoate-protein ligase B; PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: lipoate-protein ligase B; lipoate-protein ligase b complement(313806..314528) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001021 YP_004044967.1 CDS Riean_0290 NC_014738.1 314611 314991 R COGs: COG4654 Cytochrome c551/c552; InterPro IPR003088: IPR002324: IPR009056; KEGG: fba:FIC_02105 cytochrome c551/c552; PFAM: cytochrome c class I; SPTR: Cytochrome c551/c552; PFAM: Cytochrome c; cytochrome c class i complement(314611..314991) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001022 YP_004044968.1 CDS Riean_0291 NC_014738.1 314997 315197 R KEGG: fba:FIC_01498 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(314997..315197) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001023 YP_004044969.1 CDS Riean_0292 NC_014738.1 315371 315727 D KEGG: dfe:Dfer_0994 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 315371..315727 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001024 YP_004044970.1 CDS Riean_0293 NC_014738.1 315830 318970 D COGs: COG3696 Putative silver efflux pump; InterPro IPR001036: IPR004763; KEGG: fps:FP0880 multidrug resistance protein precursor AcrB/AcrD/AcrF family protein; PFAM: acriflavin resistance protein; SPTR: Probable multidrug resistance protein. AcrB/AcrD/AcrF family protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); heavy metal efflux pump, czca family 315830..318970 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001025 YP_004044971.1 CDS Riean_0294 NC_014738.1 319006 320241 D COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: fjo:Fjoh_4462 CzcA family heavy metal efflux protein; PFAM: outer membrane efflux protein; SPTR: Heavy metal efflux pump, CzcA family; PFAM: Outer membrane efflux protein; outer membrane efflux protein 319006..320241 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001026 YP_004044972.1 CDS Riean_0295 NC_014738.1 320247 321383 D COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: fjo:Fjoh_4463 RND family efflux transporter MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; TIGRFAM: RND family efflux transporter, MFP subunit; efflux transporter, rnd family, mfp subunit 320247..321383 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001027 YP_004044973.1 CDS Riean_0296 NC_014738.1 321406 322452 D COGs: COG0730 permease; InterPro IPR002781; KEGG: net:Neut_0377 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: Putative uncharacterized protein; PFAM: Sulfite exporter TauE/SafE; hypothetical protein 321406..322452 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001028 YP_004044974.1 CDS Riean_0297 NC_014738.1 322439 323167 D COGs: COG1814 Uncharacterized membrane protein; InterPro IPR008217; KEGG: chu:CHU_1290 integral membrane protein; PFAM: protein of unknown function DUF125 transmembrane; SPTR: Integral membrane protein; PFAM: VIT family; hypothetical protein 322439..323167 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001029 YP_004044975.1 CDS Riean_0298 NC_014738.1 323297 324133 D COGs: COG0447 Dihydroxynaphthoic acid synthase; InterPro IPR001753: IPR010198; KEGG: fjo:Fjoh_2784 naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: Naphthoate synthase; TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase family; TIGRFAM: naphthoate synthase (dihydroxynaphthoic acid synthetase); 1,4-dihydroxy-2-naphthoate synthase 323297..324133 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001030 YP_004044976.1 CDS Riean_0299 NC_014738.1 324164 325090 D COGs: COG1575 1 4-dihydroxy-2-naphthoate octaprenyltransferase; InterPro IPR000537: IPR004657; KEGG: fba:FIC_01439 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; SPTR: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase family; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphtoate prenyltransferase 324164..325090 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001031 YP_004044977.1 CDS Riean_0300 NC_014738.1 325123 325803 D COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: fba:FIC_01438 beta-lactamase domain protein; SPTR: Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily; beta-lactamase 325123..325803 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001032 YP_004044978.1 CDS Riean_0301 NC_014738.1 325865 326560 R KEGG: fps:FP0288 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(325865..326560) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001033 YP_004044979.1 CDS Riean_0302 NC_014738.1 326796 327245 R COGs: COG3708 conserved hypothetical protein; InterPro IPR010499; KEGG: coc:Coch_1918 transcription activator effector binding; PFAM: transcription activator effector binding; SPTR: Transcription activator effector binding; PFAM: Bacterial transcription activator, effector binding domain; transcription activator effector binding protein complement(326796..327245) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001034 YP_004044980.1 CDS Riean_0303 NC_014738.1 327585 328400 R KEGG: zpr:ZPR_1328 carboxypeptidase-like, regulatory region; SPTR: Probable outer membrane protein; hypothetical protein complement(327585..328400) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001035 YP_004044981.1 CDS Riean_0304 NC_014738.1 328766 329434 D KEGG: cyt:cce_3860 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 328766..329434 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001036 YP_004044982.1 CDS Riean_0305 NC_014738.1 329529 331667 R COGs: COG0339 Zn-dependent oligopeptidase; InterPro IPR001567; KEGG: fba:FIC_02176 peptidyl-dipeptidase I; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; PRIAM: Peptidyl-dipeptidase Dcp; SPTR: Peptidyl-dipeptidase I; PFAM: Peptidase family M3; peptidyl-dipeptidase dcp complement(329529..331667) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001037 YP_004044983.1 CDS Riean_0306 NC_014738.1 331828 332115 D COGs: COG2732 Barstar RNAse (barnase) inhibitor; InterPro IPR000468; KEGG: fba:FIC_01786 hypothetical protein; PFAM: Barstar (barnase inhibitor); SPTR: Possible barstar-like protein ribonuclease (Barnase) inhibitor; PFAM: Barstar (barnase inhibitor); barstar (barnase inhibitor) 331828..332115 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001038 YP_004044984.1 CDS Riean_0307 NC_014738.1 332112 333113 R COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: fba:FIC_01643 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Glycosyltransferase; PFAM: Glycosyl transferase family 2; family 2 glycosyl transferase complement(332112..333113) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001039 YP_004044985.1 CDS Riean_0308 NC_014738.1 333129 334286 R COGs: COG0116 N6-adenine-specific DNA methylase; InterPro IPR004114: IPR000241: IPR002052; KEGG: fba:FIC_01642 methyltransferase; PFAM: RNA methylase; THUMP domain-containing protein; PRIAM: rRNA (guanine-N(2)-)-methyltransferase; SPTR: Probable methylase; PFAM: Putative RNA methylase family UPF0020; THUMP domain; rRNA (guanine-n(2)-)-methyltransferase complement(333129..334286) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001040 YP_004044986.1 CDS Riean_0309 NC_014738.1 334464 336374 D COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR000873: IPR011904: IPR020845; KEGG: fba:FIC_01006 acetyl-coenzyme A synthetase; PFAM: AMP-dependent synthetase and ligase; SPTR: Acetyl-coenzyme A synthetase; TIGRFAM: acetate/CoA ligase; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme; TIGRFAM: acetate--CoA ligase; acetyl-coenzyme a synthetase 334464..336374 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001041 YP_004044987.1 CDS Riean_0310 NC_014738.1 336409 337167 D InterPro IPR003675; KEGG: sli:Slin_2159 abortive infection protein; PFAM: Abortive infection protein; SPTR: Abortive infection protein; PFAM: CAAX amino terminal protease family; abortive infection protein 336409..337167 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001042 YP_004044988.1 CDS Riean_0311 NC_014738.1 337178 337642 D KEGG: ava:Ava_5025 cadmium resistance transporter; SPTR: Cadmium resistance transporter; hypothetical protein 337178..337642 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001043 YP_004044989.1 CDS Riean_0313 NC_014738.1 338287 339951 R COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014021: IPR001650: IPR014014: IPR011545: IPR 005580: IPR000629: IPR014001; KEGG: fba:FIC_00733 colD-shock DEAD-box protein A; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: ATP-dependent RNA helicase; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase; dead/deah box helicase domain-containing protein complement(338287..339951) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001045 YP_004044990.1 CDS Riean_0314 NC_014738.1 340059 340565 R KEGG: fba:FIC_01281 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(340059..340565) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001046 YP_004044991.1 CDS Riean_0315 NC_014738.1 340567 340875 R KEGG: fba:FIC_01282 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1469); hypothetical protein complement(340567..340875) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001047 YP_004044992.1 CDS Riean_0316 NC_014738.1 340948 341295 R KEGG: fba:FIC_01283 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(340948..341295) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001048 YP_004044993.1 CDS Riean_0317 NC_014738.1 341373 342758 R InterPro IPR013026; KEGG: fba:FIC_01062 TPR repeat protein; SPTR: TPR repeat protein; tpr repeat protein complement(341373..342758) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001049 YP_004044994.1 CDS Riean_0318 NC_014738.1 342794 345319 R COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR002205: IPR006691: IPR005743; KEGG: fba:FIC_01061 DNA gyrase subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA gyrase/topoisomerase IV subunit A; SPTR: DNA topoisomerase (ATP-hydrolyzing); TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: DNA gyrase, A subunit; DNA gyrase subunit a complement(342794..345319) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001050 YP_004044995.1 CDS Riean_0319 NC_014738.1 345441 345755 D KEGG: fba:FIC_01060 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 345441..345755 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001051 YP_004044996.1 CDS Riean_0320 NC_014738.1 345881 347815 D COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterPro IPR001241: IPR000565: IPR003594: IPR013506: IPR 006171: IPR002288: IPR011557: IPR018522; KEGG: fba:FIC_01501 DNA gyrase subunit B; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain-containing protein; DNA gyrase subunit B domain protein; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; SPTR: DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: Toprim domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA gyrase, B subunit; DNA gyrase subunit b 345881..347815 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001052 YP_004044997.1 CDS Riean_0321 NC_014738.1 347900 348226 R COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424: IPR011344; KEGG: hmg:100206795 similar to single-stranded DNA binding protein 1; PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: Single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb); single-strand binding protein complement(347900..348226) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001053 YP_004044998.1 CDS Riean_0322 NC_014738.1 348667 349107 D KEGG: pfd:PFDG_00472 hypothetical protein similar to dynein heavy chain; SPTR: Putative uncharacterized protein; hypothetical protein 348667..349107 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001054 YP_004044999.1 CDS Riean_0323 NC_014738.1 349082 349240 D KEGG: bbz:BbuZS7_0257 leucyl-tRNA synthetase; SPTR: Leucyl-tRNA synthetase; hypothetical protein 349082..349240 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001055 YP_004045000.1 CDS Riean_0324 NC_014738.1 349255 349602 D KEGG: fjo:Fjoh_0870 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 349255..349602 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001056 YP_004045001.1 CDS Riean_0325 NC_014738.1 349606 350682 R COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107: IPR002104; KEGG: fba:FIC_00607 probable integrase; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: Probable integrase; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; integrase family protein complement(349606..350682) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001057 YP_004045002.1 CDS Riean_0326 NC_014738.1 350695 350898 R KEGG: fba:FIC_01442 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(350695..350898) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001058 YP_004045003.1 CDS Riean_0327 NC_014738.1 350976 352157 D COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092: IPR006091: IPR006090; KEGG: fba:FIC_01341 glutaryl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain-containing protein; SPTR: Glutaryl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; acyl-CoA dehydrogenase domain-containing protein 350976..352157 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001059 YP_004045004.1 CDS Riean_0328 NC_014738.1 352187 352462 D KEGG: mfs:MFS40622_0560 binding-protein-dependent transport systems inner membrane component; SPTR: Putative uncharacterized protein; hypothetical protein 352187..352462 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001060 YP_004045005.1 CDS Riean_0329 NC_014738.1 352478 353185 D COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; InterPro IPR004165: IPR012792: IPR004163; KEGG: phe:Phep_2918 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; PRIAM: 3-oxoacid CoA-transferase; SPTR: 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; 3-oxoacid CoA-transferase, a subunit 352478..353185 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001061 YP_004045006.1 CDS Riean_0330 NC_014738.1 353194 353856 D COGs: COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit; InterPro IPR004165: IPR012791: IPR004164; KEGG: phe:Phep_2917 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; PRIAM: 3-oxoacid CoA-transferase; SPTR: 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; 3-oxoacid CoA-transferase, b subunit 353194..353856 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001062 YP_004045007.1 CDS Riean_0331 NC_014738.1 353871 356426 D COGs: COG2352 Phosphoenolpyruvate carboxylase; InterPro IPR001449: IPR021135; KEGG: zpr:ZPR_2718 phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase, C-terminal region; PRIAM: Phosphoenolpyruvate carboxylase; SPTR: Phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase 353871..356426 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001063 YP_004045008.1 CDS Riean_0332 NC_014738.1 356481 357074 D KEGG: lth:KLTH0C07326g KLTH0C07326p; SPTR: ATPase; hypothetical protein 356481..357074 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001064 YP_004045009.1 CDS Riean_0333 NC_014738.1 357214 357753 D KEGG: edi:EDI_180220 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 357214..357753 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001065 YP_004045010.1 CDS Riean_0334 NC_014738.1 357758 358885 D COGs: COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; InterPro IPR003042: IPR002938; KEGG: bcz:BCZK1969 hypothetical protein; PFAM: monooxygenase FAD-binding; SPTR: Possible monooxygenase; PFAM: FAD binding domain; monooxygenase faD-binding protein 357758..358885 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001066 YP_004045011.1 CDS Riean_0335 NC_014738.1 359049 360362 R COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR000089: IPR004167: IPR001078: IPR003016; KEGG: fba:FIC_01488 dihydrolipoamide acyltransferase component of brancheD-chain alpha-keto acid dehydrogenase complex; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; SPTR: Possible dihydrolipoyllysine-residue (2-methylpropanoyl)transferase; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; hypothetical protein complement(359049..360362) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001067 YP_004045012.1 CDS Riean_0336 NC_014738.1 360446 361099 R COGs: COG2518 Protein-L-isoaspartate carboxylmethyltransferase; InterPro IPR000682; KEGG: fba:FIC_00929 protein-L-isoaspartate(D-aspartate) O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; PRIAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; SPTR: Protein-L-isoaspartate O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); TIGRFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-l-isoaspartate(D-aspartate) o-methyltransferase complement(360446..361099) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001068 YP_004045013.1 CDS Riean_0337 NC_014738.1 361121 362227 R InterPro IPR000834; KEGG: fba:FIC_01445 peptidase, family M14; PFAM: peptidase M14 carboxypeptidase A; SPTR: Peptidase M14, carboxypeptidase A; PFAM: Zinc carboxypeptidase; peptidase m14 carboxypeptidase a complement(361121..362227) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001069 YP_004045014.1 CDS Riean_0338 NC_014738.1 362563 363618 D COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance; InterPro IPR005496; KEGG: fba:FIC_01446 membrane protein, TerC family; PFAM: Integral membrane protein TerC; SPTR: Membrane protein, TerC family; PFAM: Integral membrane protein TerC family; TIGRFAM: integral membrane protein, TerC family; integral membrane protein terc 362563..363618 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001070 YP_004045015.1 CDS Riean_0339 NC_014738.1 363771 364304 D InterPro IPR001387; KEGG: fba:FIC_01447 bacteriophage CI repressor; PFAM: helix-turn-helix domain protein; SPTR: XRE family transcriptional regulator; PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein 363771..364304 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001071 YP_004045016.1 CDS Riean_0340 NC_014738.1 364312 365262 R COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: ddr:Deide_3p01670 prolyl aminopeptidase; PFAM: alpha/beta hydrolase fold; SPTR: Alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; alpha/beta fold family hydrolase complement(364312..365262) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001072 YP_004045017.1 CDS Riean_0341 NC_014738.1 365424 366038 R KEGG: fba:FIC_00857 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(365424..366038) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001073 YP_004045018.1 CDS Riean_0342 NC_014738.1 366045 366575 R KEGG: fba:FIC_00858 hypothetical protein; SPTR: Possible thioredoxin-like protein; hypothetical protein complement(366045..366575) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001074 YP_004045019.1 CDS Riean_0343 NC_014738.1 366587 367057 R KEGG: fba:FIC_00859 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; hypothetical protein complement(366587..367057) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001075 YP_004045020.1 CDS Riean_0344 NC_014738.1 367094 367579 R COGs: COG0295 Cytidine deaminase; InterPro IPR002125: IPR016192; KEGG: fba:FIC_02079 cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: Cytidine deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: cytidine deaminase, homotetrameric; cytidine deaminase complement(367094..367579) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001076 YP_004045021.1 CDS Riean_0345 NC_014738.1 367638 368981 R InterPro IPR000985; KEGG: fba:FIC_00863 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(367638..368981) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001077 YP_004045022.1 CDS Riean_0346 NC_014738.1 369028 369426 R InterPro IPR000182; KEGG: bmd:BMD_3949 GNAT family acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Putative acetyltransferase; PFAM: Acetyltransferase (GNAT) family; Gcn5-like N-acetyltransferase complement(369028..369426) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001078 YP_004045023.1 CDS Riean_0347 NC_014738.1 369467 369805 R COGs: COG0789 transcriptional regulator protein; InterPro IPR000551; KEGG: fba:FIC_00864 transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: Transcriptional regulator; PFAM: MerR family regulatory protein; transcriptional regulator complement(369467..369805) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001079 YP_004045024.1 CDS Riean_0348 NC_014738.1 369864 370841 R COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: fba:FIC_00785 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: B-glycosyltransferase, glycosyltransferase family 2 protein; PFAM: Glycosyl transferase family 2; family 2 glycosyl transferase complement(369864..370841) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001080 YP_004045025.1 CDS Riean_0349 NC_014738.1 370846 371730 R COGs: COG1560 Lauroyl/myristoyl acyltransferase; InterPro IPR004960; KEGG: fba:FIC_00786 lipid A biosynthesis lauroyl acyltransferase; PFAM: lipid A biosynthesis acyltransferase; SPTR: Lipid A biosynthesis lauroyl acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase; lipid a biosynthesis acyltransferase complement(370846..371730) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001081 YP_004045026.1 CDS Riean_0350 NC_014738.1 371829 372380 D KEGG: fba:FIC_00787 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF255; hypothetical protein 371829..372380 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001082 YP_004045027.1 CDS Riean_0351 NC_014738.1 372423 372770 R COGs: COG1393 Arsenate reductase and related protein glutaredoxin family; InterPro IPR006660; KEGG: coc:Coch_1881 arsenate reductase; PFAM: arsenate reductase and related; SPTR: Possible arsenate reductase (Glutaredoxin); PFAM: ArsC family; TIGRFAM: arsenate reductase (glutaredoxin); arsenate reductase complement(372423..372770) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001083 YP_004045028.1 CDS Riean_0352 NC_014738.1 372767 374125 R COGs: COG0124 Histidyl-tRNA synthetase; InterPro IPR006195: IPR004516: IPR002314: IPR004154: IPR 015807; KEGG: fba:FIC_01678 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; PRIAM: Histidine--tRNA ligase; SPTR: Histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase; histidyl-tRNA synthetase complement(372767..374125) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001084 YP_004045029.1 CDS Riean_0353 NC_014738.1 374273 374878 D COGs: COG1335 Amidase related to nicotinamidase; InterPro IPR000868; KEGG: fba:FIC_01416 nicotinamidase; PFAM: isochorismatase hydrolase; PRIAM: Nicotinamidase; SPTR: Nicotinamidase; PFAM: Isochorismatase family; nicotinamidase 374273..374878 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001085 YP_004045030.1 CDS Riean_0354 NC_014738.1 374986 375603 R KEGG: fba:FIC_00796 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(374986..375603) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001086 YP_004045031.1 CDS Riean_0355 NC_014738.1 375878 376309 D InterPro IPR016769; KEGG: fba:FIC_01333 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 375878..376309 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001087 YP_004045032.1 CDS Riean_0356 NC_014738.1 376335 377144 D COGs: COG0024 Methionine aminopeptidase; InterPro IPR001714: IPR000994: IPR002467; KEGG: fba:FIC_01334 methionine aminopeptidase; PFAM: peptidase M24; PRIAM: Methionyl aminopeptidase; SPTR: Methionine aminopeptidase; TIGRFAM: methionine aminopeptidase, type I; PFAM: Metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I; methionine aminopeptidase 376335..377144 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001088 YP_004045033.1 CDS Riean_0357 NC_014738.1 377212 378054 R COGs: COG0077 Prephenate dehydratase; InterPro IPR001086: IPR018528; KEGG: fba:FIC_00531 prephenate dehydratase; PFAM: prephenate dehydratase; PRIAM: Prephenate dehydratase; SPTR: Prephenate dehydratase; PFAM: Prephenate dehydratase; prephenate dehydratase complement(377212..378054) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001089 YP_004045034.1 CDS Riean_0358 NC_014738.1 378072 378890 R KEGG: chu:CHU_1135 universal stress protein; SPTR: Universal stress protein family protein; PFAM: Universal stress protein family; hypothetical protein complement(378072..378890) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001090 YP_004045035.1 CDS Riean_0359 NC_014738.1 378894 380375 R COGs: COG3263 NhaP-type Na+/H+ and K+/H+ antiporter with a unique C-terminal domain; InterPro IPR006037: IPR006153: IPR018130; KEGG: rbi:RB2501_13614 cell volume regulation protein CvrA; PFAM: sodium/hydrogen exchanger; TrkA-C domain protein; SPTR: Sodium/hydrogen exchanger family/TrkA domain protein; PFAM: Sodium/hydrogen exchanger family; TrkA-C domain; TC 2.A.36; potassium/proton antiporter, cpa1 family complement(378894..380375) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001091 YP_004045036.1 CDS Riean_0360 NC_014738.1 380526 383402 R COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR003335: IPR005791: IPR005665; KEGG: fba:FIC_00644 bifunctional preprotein translocase subunit SecD/SecF; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: Bifunctional preprotein translocase subunit SecD/SecF; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; protein translocase subunit secf; protein translocase subunit secd complement(380526..383402) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001092 YP_004045037.1 CDS Riean_0361 NC_014738.1 383521 384876 R COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR007197: IPR010723: IPR004558: IPR006638; KEGG: fba:FIC_00642 coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Coproporphyrinogen dehydrogenase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; oxygen-independent coproporphyrinogen iii oxidase complement(383521..384876) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001093 YP_004045038.1 CDS Riean_0362 NC_014738.1 385047 386498 D COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: cpi:Cpin_6812 Na+/solute symporter; PFAM: Na+/solute symporter; SPTR: Na+/solute symporter; PFAM: Sodium:solute symporter family; na+/solute symporter 385047..386498 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001094 YP_004045039.1 CDS Riean_0363 NC_014738.1 386517 387368 D COGs: COG3959 Transketolase N-terminal subunit; InterPro IPR005474; KEGG: fba:FIC_00506 transketolase, N-terminal section; PFAM: Transketolase domain-containing protein; SPTR: Transketolase; PFAM: Transketolase, thiamine diphosphate binding domain; transketolase domain-containing protein 386517..387368 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001095 YP_004045040.1 CDS Riean_0364 NC_014738.1 387382 387642 D KEGG: nml:Namu_0692 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 387382..387642 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001096 YP_004045041.1 CDS Riean_0365 NC_014738.1 387991 388302 D KEGG: coc:Coch_1942 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 387991..388302 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001097 YP_004045042.1 CDS Riean_0366 NC_014738.1 388322 388819 D COGs: COG3193 Uncharacterized protein possibly involved in utilization of glycolate and propanediol; InterPro IPR005624; KEGG: fba:FIC_01070 secreted protein; PFAM: protein of unknown function DUF336; SPTR: Putative secreted protein; PFAM: Domain of unknown function (DUF336); hypothetical protein 388322..388819 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001098 YP_004045043.1 CDS Riean_0367 NC_014738.1 388972 389586 D COGs: COG3059 membrane protein; InterPro IPR007339; KEGG: coc:Coch_1609 protein of unknown function DUF417; PFAM: protein of unknown function DUF417; SPTR: Inner membrane protein YkgB; PFAM: Protein of unknown function, DUF417; hypothetical protein 388972..389586 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001099 YP_004045044.1 CDS Riean_0368 NC_014738.1 389619 390110 D COGs: COG3193 Uncharacterized protein possibly involved in utilization of glycolate and propanediol; InterPro IPR005624; KEGG: pcr:Pcryo_1418 hypothetical protein; PFAM: protein of unknown function DUF336; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF336); hypothetical protein 389619..390110 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001100 YP_004045045.1 CDS Riean_0369 NC_014738.1 390189 390599 D COGs: COG2351 Transthyretin-like protein; InterPro IPR000895: IPR014306; KEGG: coc:Coch_0235 hydroxyisourate hydrolase; PFAM: Transthyretin; SMART: Transthyretin; SPTR: 5-hydroxyisourate hydrolase; TIGRFAM: hydroxyisourate hydrolase; PFAM: HIUase/Transthyretin family; TIGRFAM: hydroxyisourate hydrolase; hydroxyisourate hydrolase 390189..390599 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001101 YP_004045046.1 CDS Riean_0370 NC_014738.1 390619 391563 D COGs: COG3958 Transketolase C-terminal subunit; InterPro IPR005475: IPR005476; KEGG: fba:FIC_00505 transketolase, C-terminal section; PFAM: Transketolase central region; Transketolase domain-containing protein; SPTR: Transketolase; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; transketolase central region 390619..391563 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001102 YP_004045047.1 CDS Riean_0372 NC_014738.1 392202 393167 D COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: fba:FIC_01513 UDP-glucose 4-epimerase related protein; PFAM: NAD-dependent epimerase/dehydratase; SPTR: L-threonine 3-dehydrogenase; PFAM: NAD dependent epimerase/dehydratase family; naD-dependent epimerase/dehydratase 392202..393167 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001104 YP_004045048.1 CDS Riean_0373 NC_014738.1 393225 394349 R KEGG: pfa:PF13_0162 conserved Plasmodium protein, unknown function; SPTR: Putative uncharacterized protein; hypothetical protein complement(393225..394349) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001105 YP_004045049.1 CDS Riean_0374 NC_014738.1 394459 396087 R COGs: COG0459 Chaperonin GroEL (HSP60 family); InterPro IPR001844: IPR018370: IPR002423; KEGG: fba:FIC_00260 heat shock protein 60 family chaperone GroEL; PFAM: chaperonin Cpn60/TCP-1; SPTR: 60 kDa chaperonin; TIGRFAM: chaperonin GroEL; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL; chaperonin groel complement(394459..396087) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001106 YP_004045050.1 CDS Riean_0375 NC_014738.1 396165 396443 R COGs: COG0234 Co-chaperonin GroES (HSP10); InterPro IPR001476: IPR020818: IPR018369; KEGG: fba:FIC_00259 heat shock protein 60 family co-chaperone GroES; PFAM: Chaperonin Cpn10; SPTR: 10 kDa chaperonin; PFAM: Chaperonin 10 Kd subunit; chaperonin cpn10 complement(396165..396443) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001107 YP_004045051.1 CDS Riean_0376 NC_014738.1 396684 397097 R COGs: COG3187 Heat shock protein; InterPro IPR005184; KEGG: fba:FIC_00922 hypothetical protein; PFAM: protein of unknown function DUF306 Meta and HslJ; SPTR: Putative uncharacterized protein; PFAM: META domain; hypothetical protein complement(396684..397097) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001108 YP_004045052.1 CDS Riean_0377 NC_014738.1 397115 399517 R COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; InterPro IPR002547: IPR005121: IPR005146: IPR005147: IPR 004532; KEGG: fba:FIC_00921 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/4 domain protein; t-RNA-binding domain-containing protein; tRNA synthetase B5; ferredoxin-fold anticodon-binding; SPTR: Phenylalanine--tRNA ligase; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; phenylalanyl-tRNA synthetase subunit beta complement(397115..399517) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001109 YP_004045053.1 CDS Riean_0378 NC_014738.1 399656 400786 R COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR001001; KEGG: fba:FIC_00920 DNA polymerase III beta subunit; PFAM: DNA polymerase III beta chain; PRIAM: DNA-directed DNA polymerase; SMART: DNA polymerase III beta chain; SPTR: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit; DNA polymerase III subunit beta complement(399656..400786) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001110 YP_004045054.1 CDS Riean_0379 NC_014738.1 400899 401744 R KEGG: rbi:RB2501_12042 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(400899..401744) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001111 YP_004045055.1 CDS Riean_0380 NC_014738.1 401841 402245 R KEGG: zpr:ZPR_2273 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(401841..402245) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001112 YP_004045056.1 CDS Riean_0381 NC_014738.1 402257 404923 R KEGG: fba:FIC_01342 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(402257..404923) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001113 YP_004045057.1 CDS Riean_0382 NC_014738.1 404956 405591 R COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division; InterPro IPR003682; KEGG: fba:FIC_01344 ribosomal RNA small subunit methyltransferase G; PFAM: glucose inhibited division protein; SPTR: Ribosomal RNA small subunit methyltransferase G; TIGRFAM: methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G; TIGRFAM: 16S rRNA methyltransferase GidB; 16S rRNA m(7)g-527 methyltransferase complement(404956..405591) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001114 YP_004045058.1 CDS Riean_0383 NC_014738.1 405591 405941 R InterPro IPR004360; KEGG: bay:RBAM_011160 fosfomycin resistance protein FosB; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Putative metallothiol transferase FosB; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; glyoxalase/bleomycin resistance protein/dioxygenase complement(405591..405941) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001115 YP_004045059.1 CDS Riean_0384 NC_014738.1 405946 406965 R COGs: COG1087 UDP-glucose 4-epimerase; InterPro IPR008089: IPR001509: IPR005886; KEGG: fba:FIC_00598 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase; UDP-glucose 4-epimerase complement(405946..406965) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001116 YP_004045060.1 CDS Riean_0385 NC_014738.1 406975 408102 R COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: fba:FIC_00597 pigmentation and extracellular proteinase regulator; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; degt/dnrj/eryc1/strs aminotransferase complement(406975..408102) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001117 YP_004045061.1 CDS Riean_0386 NC_014738.1 408178 410607 R COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; InterPro IPR001017: IPR005475: IPR005476; KEGG: fba:FIC_01046 transketolase; PFAM: Transketolase domain-containing protein; Transketolase central region; dehydrogenase E1 component; SPTR: Pyruvate oxoisovalerate dehydrogenase alpha and beta fusion; PFAM: Dehydrogenase E1 component; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; transketolase domain-containing protein complement(408178..410607) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001118 YP_004045062.1 CDS Riean_0387 NC_014738.1 411080 413944 D COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863: IPR001431; KEGG: fba:FIC_00581 M16 family peptidase; PFAM: peptidase M16 domain protein; SPTR: M16 family peptidase; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16); peptidase m16 domain-containing protein 411080..413944 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001119 YP_004045063.1 CDS Riean_0388 NC_014738.1 414010 416130 R InterPro IPR019500; KEGG: fba:FIC_00583 hypothetical protein; PFAM: Peptidase S46; SPTR: Putative uncharacterized protein; PFAM: Peptidase S46; dipeptidyl-peptidase 7 complement(414010..416130) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001120 YP_004045064.1 CDS Riean_0389 NC_014738.1 416211 416642 R KEGG: fba:FIC_00806 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(416211..416642) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001121 YP_004045065.1 CDS Riean_0390 NC_014738.1 416843 417889 D COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: fba:FIC_01617 periplasmic binding protein; PFAM: periplasmic binding protein; SPTR: Periplasmic binding protein; PFAM: Periplasmic binding protein; periplasmic binding protein 416843..417889 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001123 YP_004045066.1 CDS Riean_0391 NC_014738.1 417973 419400 D COGs: COG0015 Adenylosuccinate lyase; InterPro IPR000362: IPR019468: IPR004769: IPR020557; KEGG: fba:FIC_00789 adenylosuccinate lyase; PFAM: Adenylosuccinate lyase-like; fumarate lyase; SPTR: Adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase; adenylosuccinate lyase 417973..419400 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001124 YP_004045067.1 CDS Riean_0392 NC_014738.1 419506 420264 R KEGG: tgo:TGME49_094650 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(419506..420264) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001125 YP_004045068.1 CDS Riean_0393 NC_014738.1 420401 422434 D COGs: COG0143 Methionyl-tRNA synthetase; InterPro IPR014758: IPR002547: IPR015413: IPR002304: IPR 004495: IPR001412; KEGG: fba:FIC_00540 methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); t-RNA-binding domain-containing protein; SPTR: Methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: Anticodon-binding domain; tRNA synthetases class I (M); Putative tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; methionyl-tRNA synthetase; methionyl-tRNA synthetase 420401..422434 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001126 YP_004045069.1 CDS Riean_0394 NC_014738.1 422595 423725 D COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092: IPR006091: IPR006090: IPR006089; KEGG: fba:FIC_00861 acyl-CoA dehydrogenase, short-chain specific; PFAM: acyl-CoA dehydrogenase domain-containing protein; SPTR: Butyryl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; acyl-CoA dehydrogenase domain-containing protein 422595..423725 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001127 YP_004045070.1 CDS Riean_0395 NC_014738.1 423875 425224 D COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014021: IPR001650: IPR014014: IPR011545: IPR 014001; KEGG: fba:FIC_00558 ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: DEAD/DEAH box helicase domain-containing protein; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; dead/deah box helicase domain-containing protein 423875..425224 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001128 YP_004045071.1 CDS Riean_0396 NC_014738.1 425285 426451 R COGs: COG1979 Uncharacterized oxidoreductase Fe-dependent alcohol dehydrogenase family; InterPro IPR001670: IPR018211; KEGG: cpi:Cpin_1126 iron-containing alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; SPTR: Possible alcohol dehydrogenase (NADP(+)); PFAM: Iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(425285..426451) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001129 YP_004045072.1 CDS Riean_0397 NC_014738.1 426514 427653 R COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092: IPR006091: IPR006090: IPR006089; KEGG: fba:FIC_01571 acyl-CoA dehydrogenase, short-chain specific; PFAM: acyl-CoA dehydrogenase domain-containing protein; SPTR: Acyl-CoA dehydrogenase family protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; acyl-CoA dehydrogenase domain-containing protein complement(426514..427653) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001130 YP_004045073.1 CDS Riean_0398 NC_014738.1 427778 429562 D COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR020459: IPR000873: IPR020845; KEGG: fba:FIC_01572 long-chain-fatty-aciD--CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: Long-chain-fatty-aciD--CoA ligase; PFAM: AMP-binding enzyme; amp-dependent synthetase and ligase 427778..429562 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001131 YP_004045074.1 CDS Riean_0399 NC_014738.1 429615 431204 R COGs: COG4108 Peptide chain release factor RF-3; InterPro IPR000795: IPR004161: IPR004548: IPR005225; KEGG: fba:FIC_01568 peptide chain release factor 3; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; SPTR: Peptide chain release factor RF3; TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; peptide chain release factor 3; peptide chain release factor 3 (brf-3) complement(429615..431204) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001132 YP_004045075.1 CDS Riean_0400 NC_014738.1 431273 432115 R InterPro IPR003091: IPR005821; KEGG: fba:FIC_01348 potassium voltage-gated channel subfamily KQT; possible potassium channel, VIC family; PFAM: Ion transport protein; SPTR: Potassium channel protein; PFAM: Ion transport protein; ion transport protein complement(431273..432115) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001133 YP_004045076.1 CDS Riean_0401 NC_014738.1 432183 433280 D COGs: COG3323 conserved hypothetical protein; InterPro IPR017221: IPR002678; KEGG: fba:FIC_01347 hypothetical protein; PFAM: protein of unknown function DUF34; SPTR: Protein of hypothetical function DUF34; PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family; hypothetical protein 432183..433280 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001134 YP_004045077.1 CDS Riean_0402 NC_014738.1 433285 434064 D COGs: COG1579 Zn-ribbon protein possibly nucleic aciD-binding; InterPro IPR003743; KEGG: fba:FIC_01346 Zn-ribbon protein, possibly nucleic aciD-binding; PFAM: protein of unknown function DUF164; SPTR: Protein of hypothetical function DUF164; PFAM: Putative zinc ribbon domain; hypothetical protein 433285..434064 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001135 YP_004045078.1 CDS Riean_0403 NC_014738.1 434166 436151 D COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: fba:FIC_01174 prolyl oligopeptidase family protein; SPTR: Peptidase S9 prolyl oligopeptidase; PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region; WD40-like Beta Propeller Repeat; prolyl oligopeptidase family protein 434166..436151 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001136 YP_004045079.1 CDS Riean_0404 NC_014738.1 436460 436885 R KEGG: pyo:PY00683 hypothetical protein; SPTR: Probable outer membrane protein; hypothetical protein complement(436460..436885) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001137 YP_004045080.1 CDS Riean_0405 NC_014738.1 436939 437325 R KEGG: zpr:ZPR_1328 carboxypeptidase-like, regulatory region; SPTR: Probable outer membrane protein; hypothetical protein complement(436939..437325) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001138 YP_004045081.1 CDS Riean_0406 NC_014738.1 437417 438499 R COGs: COG1195 Recombinational DNA repair ATPase (RecF pathway); InterPro IPR003395: IPR001238: IPR018078; KEGG: fba:FIC_01613 DNA recombination and repair protein RecF; PFAM: SMC domain protein; SPTR: DNA replication and repair protein recF; TIGRFAM: DNA replication and repair protein RecF; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: recF protein; DNA replication and repair protein recf complement(437417..438499) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001139 YP_004045082.1 CDS Riean_0407 NC_014738.1 438514 439215 R KEGG: fba:FIC_01612 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(438514..439215) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001140 YP_004045083.1 CDS Riean_0408 NC_014738.1 439280 442453 R COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR002541: IPR017562; KEGG: fba:FIC_00930 cytochrome c-type biogenesis protein; PFAM: cytochrome c assembly protein; SPTR: Cytochrome c biogenesis protein; TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: Cytochrome C assembly protein; ResB-like family; TIGRFAM: cytochrome c-type biogenesis protein CcsB; cytochrome c-type biogenesis protein ccsb complement(439280..442453) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001141 YP_004045084.1 CDS Riean_0409 NC_014738.1 442597 443277 R COGs: COG0336 tRNA-(guanine-N1)-methyltransferase; InterPro IPR002649: IPR016009; KEGG: fba:FIC_01840 tRNA (guanine37-N1) -methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; PRIAM: tRNA (guanine-N(1)-)-methyltransferase; SPTR: tRNA (guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; tRNA (guanine37-n(1)-) methyltransferase complement(442597..443277) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001142 YP_004045085.1 CDS Riean_0410 NC_014738.1 443274 444620 R COGs: COG1252 NADH dehydrogenase FAD-containing subunit; InterPro IPR013027; KEGG: fba:FIC_01841 NADH dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: NADH dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; faD-dependent pyridine nucleotide-disulfide oxidoreductase complement(443274..444620) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001143 YP_004045086.1 CDS Riean_0411 NC_014738.1 444664 445896 R COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR000089: IPR004167: IPR001078: IPR006255; KEGG: fba:FIC_00781 dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; SPTR: Dihydrolipoyllysine-residue succinyltransferase; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); 2-oxoglutarate dehydrogenase, e2 subunit, dihydrolipoamide succinyltransferase complement(444664..445896) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001144 YP_004045087.1 CDS Riean_0412 NC_014738.1 445951 448710 R COGs: COG0567 2-oxoglutarate dehydrogenase complex dehydrogenase (E1); InterPro IPR011603: IPR001017: IPR005475: IPR020003; KEGG: fba:FIC_00780 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase central region; dehydrogenase E1 component; PRIAM: Oxoglutarate dehydrogenase (succinyl-transferring); SPTR: Oxoglutarate dehydrogenase (Succinyl-transferring); TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Dehydrogenase E1 component; Transketolase, pyrimidine binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; 2-oxoglutarate dehydrogenase, e1 subunit complement(445951..448710) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001145 YP_004045088.1 CDS Riean_0413 NC_014738.1 448826 449860 R InterPro IPR019587; KEGG: fba:FIC_00779 hypothetical protein; PFAM: Polyketide cyclase/dehydrase; SPTR: Putative uncharacterized protein; PFAM: Polyketide cyclase / dehydrase and lipid transport; polyketide cyclase/dehydrase complement(448826..449860) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001146 YP_004045089.1 CDS Riean_0414 NC_014738.1 449871 450158 R InterPro IPR003769; KEGG: fba:FIC_00832 hypothetical protein; PFAM: ATP-dependent Clp protease adaptor protein ClpS; SPTR: Putative uncharacterized protein; PFAM: ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent clp protease adaptor protein clps complement(449871..450158) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001147 YP_004045090.1 CDS Riean_0415 NC_014738.1 450180 451532 R COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR000644: IPR002550: IPR005170; KEGG: fba:FIC_00831 conserved hypothetical protein; possible transport protein; PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SPTR: TlyC family hemolysin; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain; hypothetical protein complement(450180..451532) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001148 YP_004045091.1 CDS Riean_0416 NC_014738.1 451695 452564 R COGs: COG0224 F0F1-type ATP synthase gamma subunit; InterPro IPR000131; KEGG: fba:FIC_00830 ATP synthase gamma chain; PFAM: H+transporting two-sector ATPase gamma subunit; SPTR: ATP synthase gamma chain; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: ATP synthase; TIGRFAM: ATP synthase, F1 gamma subunit; ATP synthase F1 subunit gamma complement(451695..452564) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001149 YP_004045092.1 CDS Riean_0417 NC_014738.1 452636 454213 R COGs: COG0056 F0F1-type ATP synthase alpha subunit; InterPro IPR004100: IPR000194: IPR000793: IPR005294: IPR 020003; KEGG: fba:FIC_00829 F0F1 ATP synthase subunit alpha; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SPTR: ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: proton translocating ATP synthase, F1 alpha subunit; ATP synthase F1 subunit alpha complement(452636..454213) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001150 YP_004045093.1 CDS Riean_0418 NC_014738.1 454231 454770 R COGs: COG0712 F0F1-type ATP synthase delta subunit (mitochondrial oligomycin sensitivity protein); InterPro IPR000711; KEGG: fba:FIC_00828 ATP synthase delta chain; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; SPTR: H(+)-transporting ATPase F(1) delta subunit; TIGRFAM: ATP synthase F1, delta subunit; PFAM: ATP synthase delta (OSCP) subunit; TIGRFAM: ATP synthase, F1 delta subunit; F1 ATP synthase subunit delta complement(454231..454770) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001151 YP_004045094.1 CDS Riean_0419 NC_014738.1 454773 455267 R COGs: COG0711 F0F1-type ATP synthase subunit b; InterPro IPR002146: IPR005864; KEGG: fba:FIC_00827 ATP synthase B chain; PFAM: H+transporting two-sector ATPase B/B' subunit; SPTR: ATP synthase subunit b; TIGRFAM: ATP synthase F0, B subunit; PFAM: ATP synthase B/B' CF(0); TIGRFAM: ATP synthase, F0 subunit b; ATP synthase f0 subcomplex b subunit complement(454773..455267) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001152 YP_004045095.1 CDS Riean_0420 NC_014738.1 455364 455573 R InterPro IPR000454: IPR002379: IPR005953: IPR020537; KEGG: phe:Phep_0393 ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; SPTR: Putative uncharacterized protein; TIGRFAM: ATP synthase F0, C subunit; PFAM: ATP synthase subunit C; TIGRFAM: ATP synthase, F0 subunit c; ATP synthase f0 subcomplex c subunit complement(455364..455573) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001153 YP_004045096.1 CDS Riean_0421 NC_014738.1 455627 456685 R COGs: COG0356 F0F1-type ATP synthase subunit a; InterPro IPR000568; KEGG: rbi:RB2501_06565 ATP synthase A subunit; PFAM: H+transporting two-sector ATPase A subunit; SPTR: ATP synthase subunit a; TIGRFAM: ATP synthase F0, A subunit; PFAM: ATP synthase A chain; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); ATP synthase f0 subcomplex a subunit complement(455627..456685) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001154 YP_004045097.1 CDS Riean_0422 NC_014738.1 456758 457126 R KEGG: cbu:CBU_0833 ABC transporter permease/ATP-binding protein; SPTR: NADH-ubiquinone oxidoreductase chain 6; hypothetical protein complement(456758..457126) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001155 YP_004045098.1 CDS Riean_0423 NC_014738.1 457260 458477 D COGs: COG2814 Arabinose efflux permease; InterPro IPR001958: IPR011701: IPR005829; KEGG: fba:FIC_00645 tetracycline efflux protein TetA; PFAM: major facilitator superfamily MFS_1; SPTR: Tetracycline efflux protein TetA; PFAM: Major Facilitator Superfamily; TIGRFAM: Multidrug resistance protein; major facilitator superfamily protein 457260..458477 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001156 YP_004045099.1 CDS Riean_0424 NC_014738.1 458516 458857 D COGs: COG1826 Sec-independent protein secretion pathway components; InterPro IPR003369: IPR006312; KEGG: fba:FIC_00646 hypothetical protein; PFAM: sec-independent translocation protein mttA/Hcf106; SPTR: Putative uncharacterized protein; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family; twin arginine-targeting protein translocase TatB; twin-arginine translocation protein, tata/e family subunit 458516..458857 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001157 YP_004045100.1 CDS Riean_0425 NC_014738.1 458864 459424 D InterPro IPR000326; KEGG: fba:FIC_00647 membrane-associated phospholipid phosphatase; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: Putative membrane-associated phospholipid phosphatase; PFAM: PAP2 superfamily; phosphoesterase pa-phosphatase-like protein 458864..459424 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001158 YP_004045101.1 CDS Riean_0426 NC_014738.1 459696 460373 R KEGG: fba:FIC_00477 DNA recombination and repair protein RecO; SPTR: DNA repair protein; PFAM: Recombination protein O N terminal; hypothetical protein complement(459696..460373) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001160 YP_004045102.1 CDS Riean_0427 NC_014738.1 460385 462619 R InterPro IPR011110; KEGG: fba:FIC_00476 immunoreactive 84 kDa antigen PG93; SPTR: Immunoreactive 84 kDa antigen PG93; PFAM: Two component regulator propeller; immunoreactive 84 kda antigen pg93 complement(460385..462619) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001161 YP_004045103.1 CDS Riean_0428 NC_014738.1 462621 463568 R COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR006179: IPR004843: IPR006146; KEGG: fba:FIC_00475 5'-nucleotidase; PFAM: metallophosphoesterase; SPTR: 5'-nucleotidase; PFAM: Calcineurin-like phosphoesterase; metallophosphoesterase complement(462621..463568) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001162 YP_004045104.1 CDS Riean_0429 NC_014738.1 463576 464328 R COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR006179: IPR008334; KEGG: fba:FIC_00474 5'-nucleotidase; PFAM: 5'-Nucleotidase domain-containing protein; SPTR: 5'-nucleotidase; PFAM: 5'-nucleotidase, C-terminal domain; 5'-nucleotidase domain-containing protein complement(463576..464328) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001163 YP_004045105.1 CDS Riean_0430 NC_014738.1 464699 465214 D COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; InterPro IPR008332: IPR014048: IPR001497; KEGG: fba:FIC_01039 methylateD-DNA--protein-cysteine methyltransferase; PFAM: MethylateD-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylguanine DNA methyltransferase ribonuclease domain protein; SPTR: Possible methylateD-DNA--[protein]-cysteine S-methyltransferase; TIGRFAM: methylateD-DNA/protein-cysteine methyltransferase; PFAM: 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain; 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase; methylateD-DNA/protein- cysteinemethyltransferase 464699..465214 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001164 YP_004045106.1 CDS Riean_0431 NC_014738.1 465247 467841 R COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: fba:FIC_00599 TonB-dependent receptor, putative; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; tonb-dependent receptor plug complement(465247..467841) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001165 YP_004045107.1 CDS Riean_0432 NC_014738.1 467900 468925 R COGs: COG1559 periplasmic solute-binding protein; InterPro IPR003770; KEGG: fba:FIC_00600 aminodeoxychorismate lyase; PFAM: aminodeoxychorismate lyase; SPTR: Aminodeoxychorismate lyase; PFAM: YceG-like family; TIGRFAM: conserved hypothetical protein, YceG family; aminodeoxychorismate lyase complement(467900..468925) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001166 YP_004045108.1 CDS Riean_0433 NC_014738.1 468935 469696 R COGs: COG0253 Diaminopimelate epimerase; InterPro IPR001653; KEGG: fba:FIC_00601 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; diaminopimelate epimerase complement(468935..469696) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001167 YP_004045109.1 CDS Riean_0434 NC_014738.1 469945 471615 D COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR020060: IPR020058: IPR020059: IPR004514: IPR 001412; KEGG: fba:FIC_01899 glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; SPTR: Glutamine--tRNA ligase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: tRNA synthetases class I (E and Q), catalytic domain; tRNA synthetases class I (E and Q), anti-codon binding domain; TIGRFAM: glutaminyl-tRNA synthetase; glutaminyl-tRNA synthetase 469945..471615 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001168 YP_004045110.1 CDS Riean_0435 NC_014738.1 471692 472627 R InterPro IPR000537; KEGG: fba:FIC_00968 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; SPTR: 4-hydroxybenzoate-octaprenyltransferase; PFAM: UbiA prenyltransferase family; ubia prenyltransferase complement(471692..472627) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001169 YP_004045111.1 CDS Riean_0436 NC_014738.1 472646 473572 R COGs: COG1577 Mevalonate kinase; InterPro IPR001174: IPR006204; KEGG: fba:FIC_00967 mevalonate kinase; PFAM: GHMP kinase; SPTR: Mevalonate kinase; PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; ghmp kinase complement(472646..473572) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001170 YP_004045112.1 CDS Riean_0437 NC_014738.1 473656 474228 R COGs: COG2949 Uncharacterized membrane protein; InterPro IPR003848; KEGG: fba:FIC_00952 SanA protein; PFAM: protein of unknown function DUF218; SPTR: Membrane protein; PFAM: DUF218 domain; hypothetical protein complement(473656..474228) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001171 YP_004045113.1 CDS Riean_0438 NC_014738.1 474267 475367 R COGs: COG1018 Flavodoxin reductase (ferredoxin-NADPH reductase) family 1; InterPro IPR001834: IPR001041: IPR017927: IPR008333: IPR 001433: IPR006058: IPR005479; KEGG: fba:FIC_00951 phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin; SPTR: Phenylacetate-CoA oxygenase, PaaK subunit; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; oxidoreductase fad/nad(p)-binding domain-containing protein complement(474267..475367) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001172 YP_004045114.1 CDS Riean_0439 NC_014738.1 475395 475934 D InterPro IPR017936: IPR013740: IPR017937; KEGG: fba:FIC_00950 thiol:disulfide interchange protein TlpA; PFAM: Redoxin domain protein; SPTR: Thiol:disulfide interchange protein tlpA; PFAM: AhpC/TSA family; redoxin domain-containing protein 475395..475934 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001173 YP_004045115.1 CDS Riean_0440 NC_014738.1 475939 476916 D COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: fba:FIC_00949 transport system permease protein; PFAM: transport system permease protein; SPTR: Transport system permease protein; PFAM: FecCD transport family; transport system permease 475939..476916 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001174 YP_004045116.1 CDS Riean_0441 NC_014738.1 476920 477822 D COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439: IPR003593; KEGG: fba:FIC_00948 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter; ABC transporter 476920..477822 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001175 YP_004045117.1 CDS Riean_0443 NC_014738.1 478129 481311 R COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); InterPro IPR005483: IPR011761: IPR005481: IPR005479: IPR 005480: IPR011607: IPR006275: IPR000169; KEGG: fba:FIC_01018 carbamoyl-phosphate synthase large chain; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein; SPTR: Carbamoyl-phosphate synthase (Glutamine-hydrolyzing); TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; MGS-like domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit; carbamoyl-phosphate synthase large subunit complement(478129..481311) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001177 YP_004045118.1 CDS Riean_0444 NC_014738.1 481550 482026 R KEGG: coc:Coch_1014 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(481550..482026) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001178 YP_004045119.1 CDS Riean_0445 NC_014738.1 482653 483081 R KEGG: fjo:Fjoh_1903 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(482653..483081) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001179 YP_004045120.1 CDS Riean_0446 NC_014738.1 483098 484174 R COGs: COG0505 Carbamoylphosphate synthase small subunit; InterPro IPR001317: IPR011702: IPR006220: IPR017926: IPR 002474: IPR000991: IPR006274; KEGG: fba:FIC_01016 carbamoyl-phosphate synthase small chain; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; SPTR: Carbamoyl-phosphate synthase (Glutamine-hydrolyzing); TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit; carbamoyl-phosphate synthase small subunit complement(483098..484174) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001180 YP_004045121.1 CDS Riean_0447 NC_014738.1 484238 485134 R COGs: COG0540 Aspartate carbamoyltransferase catalytic chain; InterPro IPR002082: IPR006130: IPR006132: IPR006131; KEGG: fba:FIC_01015 aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; SPTR: Aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase; aspartate carbamoyltransferase complement(484238..485134) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001181 YP_004045122.1 CDS Riean_0448 NC_014738.1 485409 486425 D COGs: COG0252 L-asparaginase/ Glu-tRNAGln amidotransferase subunit D; InterPro IPR006034: IPR020827; KEGG: fba:FIC_00495 L-asparaginase; PFAM: Asparaginase/glutaminase; PRIAM: 1-alkyl-2-acetylglycerophosphocholine esterase; SPTR: L-asparaginase; PFAM: Asparaginase; TIGRFAM: L-asparaginases, type I; 1-alkyl-2-acetylglycerophosphocholine esterase 485409..486425 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001182 YP_004045123.1 CDS Riean_0449 NC_014738.1 487585 487722 R hypothetical protein complement(487585..487722) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001184 YP_004045124.1 CDS Riean_0450 NC_014738.1 487845 488036 R COGs: COG1278 Cold shock protein; InterPro IPR002059: IPR012156: IPR019844: IPR011129; KEGG: fba:FIC_01546 cold shock protein CspA; PFAM: ColD-shock protein DNA-binding; SMART: Cold shock protein; SPTR: Cold shock protein CspA; PFAM: 'ColD-shock' DNA-binding domain; colD-shock DNA-binding protein family complement(487845..488036) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001185 YP_004045125.1 CDS Riean_0451 NC_014738.1 488069 488506 R InterPro IPR002059: IPR011129; KEGG: cpi:Cpin_5168 colD-shock DNA-binding domain protein; PFAM: ColD-shock protein DNA-binding; SMART: Cold shock protein; SPTR: ColD-shock DNA-binding protein family protein; PFAM: 'ColD-shock' DNA-binding domain; colD-shock DNA-binding protein family complement(488069..488506) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001186 YP_004045126.1 CDS Riean_0452 NC_014738.1 488522 489637 R COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014021: IPR001650: IPR014014: IPR011545: IPR 000629: IPR014001; KEGG: phe:Phep_3476 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: ATP-dependent RNA helicase; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; dead/deah box helicase domain-containing protein complement(488522..489637) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001187 YP_004045127.1 CDS Riean_0453 NC_014738.1 489973 491010 R COGs: COG0820 Fe-S-cluster redox enzyme; InterPro IPR004383: IPR007197: IPR006638; KEGG: fba:FIC_01179 radical SAM enzyme, Cfr family protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Ribosomal RNA large subunit methyltransferase N; TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM enzyme, Cfr family; 23S rRNA m(2)a-2503 methyltransferase complement(489973..491010) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001188 YP_004045128.1 CDS Riean_0454 NC_014738.1 491098 492147 R COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); InterPro IPR003699; KEGG: fba:FIC_01178 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM:S-adenosylmethionine/tRNA-ribosyltransferas e-isomerase; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; s-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(491098..492147) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001189 YP_004045129.1 CDS Riean_0455 NC_014738.1 492394 493356 D COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: fba:FIC_00928 oxidoreductase, Gfo/Idh/MocA family; PFAM: oxidoreductase domain protein; SPTR: Gfo/Idh/MocA family oxidoreductase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; oxidoreductase domain-containing protein 492394..493356 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001190 YP_004045130.1 CDS Riean_0456 NC_014738.1 493508 493918 D KEGG: cby:CLM_2504 tail fiber protein; SPTR: Haloacid dehalogenase-like hydrolase; tail fiber protein 493508..493918 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001191 YP_004045131.1 CDS Riean_0457 NC_014738.1 494308 495369 D KEGG: pfa:PF13_0210 conserved Plasmodium protein, unknown function; SPTR: Putative uncharacterized protein; hypothetical protein 494308..495369 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001192 YP_004045132.1 CDS Riean_0458 NC_014738.1 495442 496404 D KEGG: gfo:GFO_2571 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 495442..496404 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001193 YP_004045133.1 CDS Riean_0459 NC_014738.1 496480 496644 D hypothetical protein 496480..496644 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001194 YP_004045134.1 CDS Riean_0460 NC_014738.1 496641 497138 R COGs: COG0359 Ribosomal protein L9; InterPro IPR020070: IPR020069: IPR020594; KEGG: fba:FIC_01518 LSU ribosomal protein L9p; PFAM: Ribosomal protein L9-like; SPTR: 50S ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: Ribosomal protein L9, N-terminal domain; Ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9; 50S ribosomal protein l9p complement(496641..497138) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001195 YP_004045135.1 CDS Riean_0461 NC_014738.1 497257 497559 R COGs: COG0238 Ribosomal protein S18; InterPro IPR001648; KEGG: fba:FIC_01517 SSU ribosomal protein S18p; PFAM: ribosomal protein S18; SPTR: 30S ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18; 30S ribosomal protein s18p complement(497257..497559) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001196 YP_004045136.1 CDS Riean_0462 NC_014738.1 497585 497926 R COGs: COG0360 Ribosomal protein S6; InterPro IPR020814: IPR000529; KEGG: fba:FIC_01516 SSU ribosomal protein S6p; PFAM: Ribosomal protein S6, bacterial-like; SPTR: 30S ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6; 30S ribosomal protein s6p complement(497585..497926) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001197 YP_004045137.1 CDS Riean_0463 NC_014738.1 498002 499423 R COGs: COG0038 Chloride channel protein EriC; InterPro IPR001807; KEGG: fba:FIC_01519 chloride channel protein; PFAM: Cl- channel voltage-gated family protein; SPTR: Chloride channel protein; PFAM: Voltage gated chloride channel; cl- channel voltage-gated family protein complement(498002..499423) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001198 YP_004045138.1 CDS Riean_0464 NC_014738.1 499558 501465 R COGs: COG0443 Molecular chaperone; InterPro IPR001023: IPR013126: IPR012725: IPR018181; KEGG: fba:FIC_02102 chaperone protein DnaK; PFAM: Heat shock protein 70; SPTR: Chaperone protein dnaK; TIGRFAM: chaperone protein DnaK; PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK; chaperone protein dnak complement(499558..501465) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001199 YP_004045139.1 CDS Riean_0465 NC_014738.1 501709 502866 D InterPro IPR010359; KEGG: mar:MAE_50260 hypothetical protein; PFAM: protein of unknown function DUF955; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF955); hypothetical protein 501709..502866 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001200 YP_004045140.1 CDS Riean_0466 NC_014738.1 502863 503438 D KEGG: sto:ST1370 signal recognition particle receptor protein; SPTR: Predicted protein; hypothetical protein 502863..503438 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001201 YP_004045141.1 CDS Riean_0467 NC_014738.1 503653 506112 D COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; InterPro IPR014021: IPR001650: IPR011545: IPR005259: IPR 014001; KEGG: fba:FIC_00799 helicase PriA essential for OriC/DnaA-independent DNA replication; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: DNA replication factor Y; TIGRFAM: primosomal protein N'; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; TIGRFAM: primosomal protein N'; primosomal protein n' 503653..506112 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001202 YP_004045142.1 CDS Riean_0468 NC_014738.1 506233 507654 D COGs: COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); InterPro IPR000667; KEGG: fba:FIC_00800 D-alanyl-D-alanine carboxypeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; PRIAM: Serine-type D-Ala-D-Ala carboxypeptidase; SPTR: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family; D-alanyl-D-alaninecarboxypeptidase/ D-alanyl-D-alanine-endopeptidase 506233..507654 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001203 YP_004045143.1 CDS Riean_0469 NC_014738.1 507744 508937 D COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839: IPR011282; KEGG: fba:FIC_00804 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: aminotransferase class I and II; PRIAM: Glycine C-acetyltransferase; SPTR: Glycine C-acetyltransferase; TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase; 2-amino-3-ketobutyrate coenzyme A ligase; 2-amino-3-ketobutyrate coenzyme a ligase 507744..508937 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001204 YP_004045144.1 CDS Riean_0470 NC_014738.1 509040 509963 D COGs: COG1715 Restriction endonuclease; InterPro IPR007560; KEGG: neu:NE2450 Mrr restriction system protein; PFAM: restriction endonuclease; SPTR: Putative Mrr restriction system protein; PFAM: Restriction endonuclease; restriction endonuclease 509040..509963 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001205 YP_004045145.1 CDS Riean_0471 NC_014738.1 510093 510785 R InterPro IPR003689; KEGG: fba:FIC_01639 hypothetical protein; PFAM: zinc/iron permease; SPTR: Putative uncharacterized protein; PFAM: ZIP Zinc transporter; zinc/iron permease complement(510093..510785) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001206 YP_004045146.1 CDS Riean_0472 NC_014738.1 510976 512013 D COGs: COG0031 Cysteine synthase; InterPro IPR001926; KEGG: fba:FIC_01300 cystathionine beta-synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: Cysteine synthase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cystathionine beta-synthase; pyridoxal-5'-phosphate-dependent protein subunit beta 510976..512013 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001207 YP_004045147.1 CDS Riean_0473 NC_014738.1 512109 512435 D COGs: COG2076 Membrane transporter of cations and cationic drugs; InterPro IPR000390; KEGG: fjo:Fjoh_3295 small multidrug resistance protein; PFAM: small multidrug resistance protein; SPTR: Small multidrug resistance protein; PFAM: Small Multidrug Resistance protein; small multidrug resistance protein 512109..512435 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001208 YP_004045148.1 CDS Riean_0474 NC_014738.1 512443 513972 R InterPro IPR008756; KEGG: fba:FIC_01266 conserved hypothetical protein, membrane; PFAM: peptidase M56 BlaR1; SPTR: Putative uncharacterized protein; PFAM: BlaR1 peptidase M56; peptidase m56 blar1 complement(512443..513972) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001209 YP_004045149.1 CDS Riean_0475 NC_014738.1 513979 514338 R COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: fba:FIC_01267 transcriptional regulator; PFAM: Penicillinase repressor; SPTR: Probable antibiotic resistance-related regulatory protein; PFAM: Penicillinase repressor; transcriptional repressor, copy family complement(513979..514338) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001210 YP_004045150.1 CDS Riean_0476 NC_014738.1 514485 515888 R COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR013027: IPR000815: IPR004099: IPR006258: IPR 012999; KEGG: fba:FIC_01592 dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SPTR: Dihydrolipoyl dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase complement(514485..515888) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001211 YP_004045151.1 CDS Riean_0477 NC_014738.1 516016 516822 R COGs: COG2326 conserved hypothetical protein; InterPro IPR016898: IPR005660; KEGG: nam:NAMH_0823 PvdS; PFAM: protein of unknown function DUF344; SPTR: Polyphosphate kinase 2; PFAM: Polyphosphate kinase 2 (PPK2); TIGRFAM: polyphosphate kinase 2, PA0141 family; hypothetical protein complement(516016..516822) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001212 YP_004045152.1 CDS Riean_0478 NC_014738.1 516841 517695 R COGs: COG2326 conserved hypothetical protein; InterPro IPR016898: IPR005660; KEGG: nde:NIDE3880 hypothetical protein; PFAM: protein of unknown function DUF344; SPTR: Putative uncharacterized protein; PFAM: Polyphosphate kinase 2 (PPK2); TIGRFAM: polyphosphate kinase 2, PA0141 family; hypothetical protein complement(516841..517695) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001213 YP_004045153.1 CDS Riean_0479 NC_014738.1 518162 518479 R COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR006662: IPR017936: IPR013766: IPR005746: IPR 017937; KEGG: fba:FIC_00764 thioredoxin; PFAM: Thioredoxin domain-containing protein; SPTR: Thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin; thioredoxin complement(518162..518479) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001216 YP_004045154.1 CDS Riean_0480 NC_014738.1 518563 519708 R COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR016454: IPR000192: IPR020578; KEGG: fba:FIC_00763 cysteine desulfurase; PFAM: aminotransferase class V; PRIAM: Cysteine desulfurase; SPTR: Cysteine desulfurase; PFAM: Aminotransferase class-V; cysteine desulfurase complement(518563..519708) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001217 YP_004045155.1 CDS Riean_0481 NC_014738.1 519712 520221 R KEGG: ptm:GSPATT00026408001 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(519712..520221) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001218 YP_004045156.1 CDS Riean_0482 NC_014738.1 520242 520829 R COGs: COG0560 Phosphoserine phosphatase; InterPro IPR006383: IPR006385; KEGG: fba:FIC_00762 HAD-superfamily hydrolase subfamily IB, PSPase-like protein; SPTR: HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; haD-superfamily hydrolase, subfamily ib (pspase-like) complement(520242..520829) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001219 YP_004045157.1 CDS Riean_0483 NC_014738.1 520863 521588 R COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002347: IPR020904; KEGG: fba:FIC_00761 3-oxoacyl-[acyl-carrier protein] reductase paralog; SPTR: 3-oxoacyl-[acyl-carrier protein] reductase paralog; PFAM: short chain dehydrogenase; 3-oxoacyl-ACP reductase complement(520863..521588) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001220 YP_004045158.1 CDS Riean_0484 NC_014738.1 521608 522579 R COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: fba:FIC_00736 octaprenyl-diphosphate synthase; PFAM: Polyprenyl synthetase; SPTR: Possible geranyltranstransferase; PFAM: Polyprenyl synthetase; polyprenyl synthetase complement(521608..522579) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001221 YP_004045159.1 CDS Riean_0485 NC_014738.1 522702 522962 R InterPro IPR005651; KEGG: fpl:Ferp_0384 protein of unknown function DUF343; PFAM: protein of unknown function DUF343; SPTR: Putative uncharacterized protein; PFAM: Trm112p-like protein; hypothetical protein complement(522702..522962) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001222 YP_004045160.1 CDS Riean_0486 NC_014738.1 522965 523588 R COGs: COG0352 Thiamine monophosphate synthase; InterPro IPR003733; KEGG: saf:SULAZ_0957 thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; SPTR: Thiamin-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase; thiamine monophosphate synthase complement(522965..523588) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001223 YP_004045161.1 CDS Riean_0487 NC_014738.1 523579 524622 R COGs: COG0309 Hydrogenase maturation factor; InterPro IPR000728: IPR010918; KEGG: sti:Sthe_2120 AIR synthase related protein domain protein; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; SPTR: Hydrogenase expression/formation factor related protein; PFAM: AIR synthase related protein, C-terminal domain; air synthase related protein domain-containing protein complement(523579..524622) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001224 YP_004045162.1 CDS Riean_0488 NC_014738.1 524635 525357 R COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: rrs:RoseRS_4381 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Putative uncharacterized protein; PFAM: Methyltransferase domain; type 11 methyltransferase complement(524635..525357) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001225 YP_004045163.1 CDS Riean_0489 NC_014738.1 525625 526389 D KEGG: fba:FIC_02177 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2807); hypothetical protein 525625..526389 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001226 YP_004045164.1 CDS Riean_0490 NC_014738.1 526473 527864 R COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933: IPR011650; KEGG: fba:FIC_00958 N-acyl-L-amino acid amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: N-acyl-L-amino acid amidohydrolase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; peptidase m20 complement(526473..527864) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001227 YP_004045165.1 CDS Riean_0491 NC_014738.1 527965 528612 R COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006664: IPR006665; KEGG: fba:FIC_01635 OmpA/MotB; PFAM: OmpA/MotB domain protein; SPTR: OmpA/MotB domain protein; PFAM: OmpA family; ompa/motb domain-containing protein complement(527965..528612) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001228 YP_004045166.1 CDS Riean_0492 NC_014738.1 528679 529830 R InterPro IPR004398; KEGG: fba:FIC_00956 SAM-dependent methyltransferase; PFAM: Conserved hypothetical protein CHP00095; SPTR: Putative uncharacterized protein; PFAM: Conserved hypothetical protein 95; hypothetical protein complement(528679..529830) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001229 YP_004045167.1 CDS Riean_0493 NC_014738.1 530376 530903 D COGs: COG0703 Shikimate kinase; InterPro IPR000623; KEGG: fba:FIC_00480 shikimate kinase I; PFAM: shikimate kinase; PRIAM: Shikimate kinase; SPTR: Shikimate kinase; PFAM: Shikimate kinase; shikimate kinase 530376..530903 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001233 YP_004045168.1 CDS Riean_0494 NC_014738.1 530875 531309 R COGs: COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); InterPro IPR002942; KEGG: fba:FIC_00479 ribosome-associated heat shock protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: Heat shock protein 15; PFAM: S4 domain; heat shock protein hsp15 complement(530875..531309) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001234 YP_004045169.1 CDS Riean_0495 NC_014738.1 531390 532109 D KEGG: fba:FIC_00478 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 531390..532109 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001235 YP_004045170.1 CDS Riean_0496 NC_014738.1 532147 534237 R COGs: COG1200 RecG-like helicase; InterPro IPR014021: IPR001650: IPR004365: IPR011545: IPR 004609: IPR014001; KEGG: fba:FIC_01455 ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: ATP-dependent DNA helicase; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: Helicase conserved C-terminal domain; OB-fold nucleic acid binding domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecG; ATP-dependent DNA helicase recg complement(532147..534237) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001236 YP_004045171.1 CDS Riean_0497 NC_014738.1 534355 535296 D COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003439: IPR017871: IPR003593; KEGG: fba:FIC_01684 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter; ABC transporter 534355..535296 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001237 YP_004045172.1 CDS Riean_0498 NC_014738.1 535338 535676 R COGs: COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism; InterPro IPR013987: IPR013988: IPR004624; KEGG: fba:FIC_01683 alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; SPTR: Alkylphosphonate utilization operon protein PhnA; TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; PhnA Zinc-Ribbon; TIGRFAM: alkylphosphonate utilization operon protein PhnA; alkylphosphonate utilization operon protein phna complement(535338..535676) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001238 YP_004045173.1 CDS Riean_0499 NC_014738.1 535804 537075 R COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839: IPR001917; KEGG: fba:FIC_01299 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: aminotransferase class I and II; PRIAM: 8-amino-7-oxononanoate synthase; SPTR: Possible glycine C-acetyltransferase; PFAM: Aminotransferase class I and II; 8-amino-7-oxononanoate synthase complement(535804..537075) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001239 YP_004045174.1 CDS Riean_0500 NC_014738.1 537217 538707 R COGs: COG3975 protease with the C-terminal PDZ domain; KEGG: rbi:RB2501_09220 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(537217..538707) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001240 YP_004045175.1 CDS Riean_0501 NC_014738.1 538775 539752 R COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: fba:FIC_01182 octaprenyl-diphosphate synthase; PFAM: Polyprenyl synthetase; SPTR: Possible geranyltranstransferase; PFAM: Polyprenyl synthetase; polyprenyl synthetase complement(538775..539752) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001241 YP_004045176.1 CDS Riean_0502 NC_014738.1 539793 540674 R KEGG: fba:FIC_01181 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(539793..540674) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001242 YP_004045177.1 CDS Riean_0503 NC_014738.1 540723 541136 D InterPro IPR000086: IPR020084; KEGG: fba:FIC_01353 hypothetical protein; PFAM: NUDIX hydrolase; SPTR: Putative uncharacterized protein; PFAM: NUDIX domain; nudix hydrolase 540723..541136 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001243 YP_004045178.1 CDS Riean_0504 NC_014738.1 541210 541590 D InterPro IPR005650; KEGG: fba:FIC_01404 antibiotic resistance-related regulatory protein; PFAM: Penicillinase repressor; SPTR: Putative antibiotic resistance-related regulatory protein; PFAM: Penicillinase repressor; penicillinase repressor 541210..541590 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001244 YP_004045179.1 CDS Riean_0505 NC_014738.1 541613 543874 D COGs: COG1289 membrane protein; KEGG: fba:FIC_00566 hypothetical protein; SPTR: Protein of hypothetical function DUF893; PFAM: Fusaric acid resistance protein family; TIGRFAM: hypothetical membrane protein, TIGR01666; hypothetical protein 541613..543874 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001245 YP_004045180.1 CDS Riean_0506 NC_014738.1 543847 544458 R InterPro IPR008278; KEGG: fba:FIC_00565 siderophore (surfactin) biosynthesis regulatory protein; PFAM: 4'-phosphopantetheinyl transferase; SPTR: Siderophore (Surfactin) biosynthesis regulatory protein; PFAM: 4'-phosphopantetheinyl transferase superfamily; 4'-phosphopantetheinyl transferase complement(543847..544458) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001246 YP_004045181.1 CDS Riean_0507 NC_014738.1 544475 545617 R COGs: COG0306 Phosphate/sulphate permease; InterPro IPR001204; KEGG: fba:FIC_00735 probable low-affinity inorganic phosphate transporter; PFAM: phosphate transporter; SPTR: Probable low-affinity inorganic phosphate transporter; PFAM: Phosphate transporter family; phosphate transporter complement(544475..545617) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001247 YP_004045182.1 CDS Riean_0508 NC_014738.1 545650 546288 R COGs: COG1392 Phosphate transport regulator (distant homolog of PhoU); InterPro IPR018445; KEGG: fba:FIC_00734 possible phosphate transport regulator; PFAM: Putitive phosphate transport regulator; SPTR: Possible phosphate transport regulator; PFAM: Protein of unknown function DUF47; TIGRFAM: conserved hypothetical protein TIGR00153; phosphate transport regulator complement(545650..546288) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001248 YP_004045183.1 CDS Riean_0509 NC_014738.1 546570 547103 D KEGG: str:Sterm_0792 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 546570..547103 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001249 YP_004045184.1 CDS Riean_0510 NC_014738.1 547205 549517 R COGs: COG0620 Methionine synthase II (cobalamin-independent); InterPro IPR006276: IPR013215: IPR002629; KEGG: coc:Coch_1731 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; PFAM: Methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein; SPTR:5-methyltetrahydropteroyltriglutamate--homocys teinemethyltransferase; TIGRFAM:5-methyltetrahydropteroyltriglutamate/homoc ysteineS-methyltransferase; PFAM: Cobalamin-independent synthase, N-terminal domain; Cobalamin-independent synthase, Catalytic domain; TIGRFAM: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; methionine synthase (b12-independent) complement(547205..549517) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001250 YP_004045185.1 CDS Riean_0511 NC_014738.1 549835 550170 R KEGG: cts:Ctha_2339 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(549835..550170) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001251 YP_004045186.1 CDS Riean_0512 NC_014738.1 550305 551033 R COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: fba:FIC_01280 RNA methyltransferase, TrmH family; PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: tRNA/rRNA methyltransferase; manually curated; PFAM: SpoU rRNA Methylase family; tRNA/rRNA methyltransferase (spou) complement(550305..551033) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001252 YP_004045187.1 CDS Riean_0513 NC_014738.1 551019 553598 D COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827: IPR000184; KEGG: fba:FIC_01279 hypothetical protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; SPTR: Putative uncharacterized protein; PFAM: Surface antigen variable number repeat; Surface antigen; surface antigen (d15) 551019..553598 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001253 YP_004045188.1 CDS Riean_0514 NC_014738.1 553659 554741 R COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR002701: IPR006218: IPR020822; KEGG: fba:FIC_01361 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta; PFAM: DAHP synthetase I/KDSA; Chorismate mutase, type II; SPTR: 3-deoxy-7-phosphoheptulonate synthase; PFAM: Chorismate mutase type II; DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; dahp synthetase i/kdsa complement(553659..554741) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001254 YP_004045189.1 CDS Riean_0515 NC_014738.1 554753 556432 R COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR001270: IPR003959: IPR012763: IPR003593; KEGG: fba:FIC_01363 DNA polymerase III; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: DNA polymerase III subunit gamma/tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: ATPase family associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, subunit gamma and tau; DNA polymerase III subunits gamma/tau complement(554753..556432) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001255 YP_004045190.1 CDS Riean_0516 NC_014738.1 556568 557179 R COGs: COG0221 Inorganic pyrophosphatase; InterPro IPR008162; KEGG: fba:FIC_01394 inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase; PRIAM: Inorganic diphosphatase; SPTR: Inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase; inorganic diphosphatase complement(556568..557179) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001256 YP_004045191.1 CDS Riean_0517 NC_014738.1 557196 557702 R KEGG: fba:FIC_01395 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(557196..557702) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001257 YP_004045192.1 CDS Riean_0518 NC_014738.1 557761 558663 R KEGG: fba:FIC_01398 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(557761..558663) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001258 YP_004045193.1 CDS Riean_0519 NC_014738.1 558647 559324 R COGs: COG2003 DNA repair protein; InterPro IPR001405: IPR020891; KEGG: fba:FIC_01399 DNA repair protein RadC; PFAM: DNA repair protein RadC; SPTR: DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc; DNA repair protein radc complement(558647..559324) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001259 YP_004045194.1 CDS Riean_0520 NC_014738.1 559349 560014 R COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR015854: IPR017871: IPR003593; KEGG: fba:FIC_01400 lipoprotein releasing system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC superfamily ATP binding cassette transporter, ABC protein; PFAM: ABC transporter; ABC transporter complement(559349..560014) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001260 YP_004045195.1 CDS Riean_0521 NC_014738.1 560116 561831 R KEGG: cat:CA2559_06760 outer membrane protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(560116..561831) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001261 YP_004045196.1 CDS Riean_0522 NC_014738.1 561916 562284 D COGs: COG1380 Putative effector of murein hydrolase LrgA; InterPro IPR005538; KEGG: bth:BT_3691 hypothetical protein; PFAM: LrgA family protein; SPTR: LrgA family protein; PFAM: LrgA family; lrga family protein 561916..562284 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001262 YP_004045197.1 CDS Riean_0523 NC_014738.1 562287 562979 D COGs: COG1346 Putative effector of murein hydrolase; InterPro IPR007300; KEGG: coc:Coch_0074 LrgB family protein; PFAM: LrgB family protein; SPTR: LrgB family protein; PFAM: LrgB-like family; TIGRFAM: conserved hypothetical protein TIGR00659; lrgb family protein 562287..562979 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001263 YP_004045198.1 CDS Riean_0524 NC_014738.1 562995 563819 D COGs: COG0294 Dihydropteroate synthase; InterPro IPR000489: IPR006390; KEGG: fba:FIC_01458 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; PRIAM: Dihydropteroate synthase; SPTR: Dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase; dihydropteroate synthase 562995..563819 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001264 YP_004045199.1 CDS Riean_0525 NC_014738.1 563849 564520 R COGs: COG0283 Cytidylate kinase; InterPro IPR011994: IPR003136; KEGG: fba:FIC_01284 cytidylate kinase; PFAM: cytidylate kinase region; SPTR: Cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: Cytidylate kinase; TIGRFAM: cytidylate kinase; cytidylate kinase complement(563849..564520) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001265 YP_004045200.1 CDS Riean_0526 NC_014738.1 564542 565537 R KEGG: fba:FIC_01285 low affinity penicillin binding protein; SPTR: Low affinity penicillin binding protein; low affinity penicillin binding protein complement(564542..565537) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001266 YP_004045201.1 CDS Riean_0527 NC_014738.1 565550 566590 R InterPro IPR005242; KEGG: fba:FIC_00708 integral membrane protein; SPTR: Integral membrane protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein; integral membrane protein complement(565550..566590) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001267 YP_004045202.1 CDS Riean_0528 NC_014738.1 566591 566941 R COGs: COG0853 Aspartate 1-decarboxylase; InterPro IPR003190; KEGG: fba:FIC_00707 aspartate 1-decarboxylase; PFAM: aspartate decarboxylase; PRIAM: Aspartate 1-decarboxylase; SPTR: Aspartate 1-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: Aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase; aspartate 1-decarboxylase complement(566591..566941) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001268 YP_004045203.1 CDS Riean_0529 NC_014738.1 567238 567528 D COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119: IPR020816: IPR017441; KEGG: fba:FIC_00706 DNA-binding protein HU-beta; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: DNA-binding protein HU-beta; PFAM: Bacterial DNA-binding protein; nucleoid protein hbs 567238..567528 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001269 YP_004045204.1 CDS Riean_0530 NC_014738.1 567665 568741 R InterPro IPR019775; KEGG: pgn:PGN_0794 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2891); hypothetical protein complement(567665..568741) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001270 YP_004045205.1 CDS Riean_0531 NC_014738.1 568809 569453 R COGs: COG0259 Pyridoxamine-phosphate oxidase; InterPro IPR011576: IPR019576: IPR000659: IPR019740; KEGG: fba:FIC_00705 pyridoxamine 5'-phosphate oxidase; PFAM: Pyridoxine 5'-phosphate oxidase, dimerisation-like; pyridoxamine 5'-phosphate oxidase-related FMN-binding; PRIAM: Pyridoxal 5'-phosphate synthase; SPTR: Pyridoxine/pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: Pyridoxamine 5'-phosphate oxidase; Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; TIGRFAM: pyridoxamine-phosphate oxidase; pyridoxamine 5'-phosphate oxidase complement(568809..569453) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001271 YP_004045206.1 CDS Riean_0532 NC_014738.1 569476 570024 D COGs: COG1678 Putative transcriptional regulator protein; InterPro IPR003774; KEGG: fba:FIC_00704 transcriptional regulator; PFAM: protein of unknown function DUF179; SPTR: Transcriptional regulator; PFAM: Uncharacterized ACR, COG1678; hypothetical protein 569476..570024 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001272 YP_004045207.1 CDS Riean_0533 NC_014738.1 570114 571556 D COGs: COG2195 Di- and tripeptidase; InterPro IPR001160: IPR002933: IPR011650; KEGG: fba:FIC_01558 aminoacyl-histidine dipeptidase (peptidase D); PFAM: peptidase dimerisation domain protein; peptidase M20; PRIAM: Xaa-His dipeptidase; SPTR: Xaa-His dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: Peptidase family M20/M25/M40; TIGRFAM: aminoacyl-histidine dipeptidase; aminoacyl-histidine dipeptidase 570114..571556 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001273 YP_004045208.1 CDS Riean_0534 NC_014738.1 571638 572564 D InterPro IPR005135: IPR003006; KEGG: fba:FIC_01839 hypothetical protein; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase family protein; PFAM: Endonuclease/Exonuclease/phosphatase family; endonuclease/exonuclease/phosphatase 571638..572564 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001274 YP_004045209.1 CDS Riean_0535 NC_014738.1 572606 573670 D COGs: COG0082 Chorismate synthase; InterPro IPR000453: IPR020541; KEGG: fba:FIC_00289 chorismate synthase; PFAM: chorismate synthase; PRIAM: Chorismate synthase; SPTR: Chorismate synthase; TIGRFAM: chorismate synthase; PFAM: Chorismate synthase; TIGRFAM: chorismate synthase; chorismate synthase 572606..573670 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001275 YP_004045210.1 CDS Riean_0536 NC_014738.1 573673 574236 D KEGG: fba:FIC_00290 thioredoxin; SPTR: Thioredoxin-like protein; thioredoxin 573673..574236 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001276 YP_004045211.1 CDS Riean_0537 NC_014738.1 574258 574815 D InterPro IPR017936: IPR000866: IPR017937; KEGG: fba:FIC_00291 thiol:disulfide interchange protein TlpA; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Possible cytochrome C-type biogenesis protein; PFAM: Redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen 574258..574815 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001277 YP_004045212.1 CDS Riean_0538 NC_014738.1 574871 575197 D InterPro IPR010652; KEGG: fba:FIC_00292 hypothetical protein; PFAM: protein of unknown function DUF1232; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1232); hypothetical protein 574871..575197 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001278 YP_004045213.1 CDS Riean_0539 NC_014738.1 575278 575580 R KEGG: yen:YE3319 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; SPTR: Phosphoenolpyruvate-protein phosphotransferase ptsP; hypothetical protein complement(575278..575580) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001279 YP_004045214.1 CDS Riean_0540 NC_014738.1 575617 576195 R KEGG: lil:LA_1813 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(575617..576195) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001280 YP_004045215.1 CDS Riean_0541 NC_014738.1 576173 577045 R COGs: COG0320 Lipoate synthase; InterPro IPR003698: IPR007197: IPR006638; KEGG: fba:FIC_01810 lipoyl synthase; PFAM: Radical SAM domain protein; PRIAM: Lipoyl synthase; SMART: Elongator protein 3/MiaB/NifB; SPTR: Lipoyl synthase; TIGRFAM: lipoic acid synthetase; PFAM: Radical SAM superfamily; TIGRFAM: lipoate synthase; lipoic acid synthetase complement(576173..577045) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001281 YP_004045216.1 CDS Riean_0542 NC_014738.1 577035 577592 R COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: fba:FIC_01811 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: ECF family DNA-directed RNA polymerase sigma subunit SigW; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase, sigma-24 subunit, ecf subfamily complement(577035..577592) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001282 YP_004045217.1 CDS Riean_0543 NC_014738.1 578088 578447 D COGs: COG0858 Ribosome-binding factor A; InterPro IPR000238; KEGG: fba:FIC_01648 ribosome-binding factor A; PFAM: ribosome-binding factor A; SPTR: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; ribosome-binding factor a 578088..578447 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001284 YP_004045218.1 CDS Riean_0544 NC_014738.1 578460 579662 D COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: fba:FIC_01649 lipoprotein releasing system transmembrane protein LolC; PFAM: protein of unknown function DUF214; SPTR: Lipoprotein releasing system transmembrane protein; PFAM: Predicted permease; hypothetical protein 578460..579662 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001285 YP_004045219.1 CDS Riean_0545 NC_014738.1 579704 580753 D COGs: COG2356 Endonuclease I; InterPro IPR007346; KEGG: fba:FIC_01650 endonuclease I; PFAM: Endonuclease I; SPTR: Deoxyribonuclease I; PFAM: Endonuclease I; endonuclease i 579704..580753 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001286 YP_004045220.1 CDS Riean_0546 NC_014738.1 581171 582583 R COGs: COG1785 Alkaline phosphatase; InterPro IPR001952; KEGG: coc:Coch_0399 alkaline phosphatase; PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase; SPTR: Alkaline phosphatase; PFAM: Alkaline phosphatase; alkaline phosphatase complement(581171..582583) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001287 YP_004045221.1 CDS Riean_0547 NC_014738.1 582724 583992 D COGs: COG1058 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; InterPro IPR008135: IPR001453: IPR008136; KEGG: fba:FIC_01801 competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; SPTR: Competence/damage-inducible protein CinA; TIGRFAM: competence/damage-inducible protein CinA; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain; competence/damage-inducible protein cina 582724..583992 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001288 YP_004045222.1 CDS Riean_0548 NC_014738.1 584088 586160 D COGs: COG3590 metalloendopeptidase; InterPro IPR018497: IPR008753; KEGG: fba:FIC_00438 metallopeptidase; PFAM: peptidase M13; Peptidase M13, neprilysin-like; PRIAM: Endothelin-converting enzyme 1; SPTR: Metallopeptidase; PFAM: Peptidase family M13; endothelin-converting enzyme 1 584088..586160 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001289 YP_004045223.1 CDS Riean_0549 NC_014738.1 586259 586978 D COGs: COG1183 Phosphatidylserine synthase; InterPro IPR000462: IPR019825; KEGG: fba:FIC_00694 CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 586259..586978 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001290 YP_004045224.1 CDS Riean_0550 NC_014738.1 586988 587752 D COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR013520: IPR006055; KEGG: fba:FIC_00693 DNA Pol III epsilon chain; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; SPTR: DNA Pol III Epsilon Chain; PFAM: Exonuclease; exonuclease rnase t and DNA polymerase iii 586988..587752 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001291 YP_004045225.1 CDS Riean_0551 NC_014738.1 587778 588383 D COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR002529; KEGG: fba:FIC_00692 fumarylacetoacetate hydrolase family protein; PFAM: fumarylacetoacetate (FAA) hydrolase; SPTR: Fumarylacetoacetate hydrolase; PFAM: Fumarylacetoacetate (FAA) hydrolase family; fumarylacetoacetate (faa) hydrolase 587778..588383 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001292 YP_004045226.1 CDS Riean_0552 NC_014738.1 588446 588889 D COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006015: IPR006016; KEGG: fba:FIC_00691 universal stress protein family; PFAM: UspA domain-containing protein; SPTR: Universal stress protein UspA; PFAM: Universal stress protein family; uspa domain-containing protein 588446..588889 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001293 YP_004045227.1 CDS Riean_0553 NC_014738.1 589496 590824 D COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; InterPro IPR002500: IPR017598; KEGG: fba:FIC_01226 hypothetical protein; PFAM: phosphoadenosine phosphosulfate reductase; SPTR: Putative sulfurtransferase DndC; TIGRFAM: sulfurtransferase DndC; PFAM: Phosphoadenosine phosphosulfate reductase family; TIGRFAM: sulfurtransferase DndC; sulfurtransferase dndc 589496..590824 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001294 YP_004045228.1 CDS Riean_0554 NC_014738.1 590826 592943 D InterPro IPR017599; KEGG: fba:FIC_01227 DNA repair ATPase; SPTR: DNA sulfur modification protein DndD; TIGRFAM: DNA sulfur modification protein DndD; TIGRFAM: DNA sulfur modification protein DndD; DNA sulfur modification protein dndd 590826..592943 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001295 YP_004045229.1 CDS Riean_0555 NC_014738.1 592933 594513 D InterPro IPR014969: IPR003593; KEGG: bfr:BF1153 hypothetical protein; PFAM: Domain of unknown function DUF1832; SMART: AAA ATPase; SPTR: Putative uncharacterized protein; PFAM: FtsK/SpoIIIE family; Bacterial protein of unknown function (DUF853); Domain of unknown function (DUF1832); TIGRFAM: DNA sulfur modification protein DndE; hypothetical protein 592933..594513 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001296 YP_004045230.1 CDS Riean_0556 NC_014738.1 594703 595335 R KEGG: dfe:Dfer_4646 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(594703..595335) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001297 YP_004045231.1 CDS Riean_0557 NC_014738.1 595373 597430 R COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910: IPR000531; KEGG: sli:Slin_6535 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; tonb-dependent receptor complement(595373..597430) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001298 YP_004045232.1 CDS Riean_0558 NC_014738.1 597553 598449 D KEGG: fps:FP1496 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 597553..598449 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001299 YP_004045233.1 CDS Riean_0559 NC_014738.1 598579 599466 R COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: fba:FIC_02078 exopolyphosphatase; PFAM: Ppx/GppA phosphatase; SPTR: Exopolyphosphatase; PFAM: Ppx/GppA phosphatase family; ppx/gppa phosphatase complement(598579..599466) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001300 YP_004045234.1 CDS Riean_0560 NC_014738.1 599473 601539 R COGs: COG0855 Polyphosphate kinase; InterPro IPR003414; KEGG: fba:FIC_02116 polyphosphate kinase; PFAM: Polyphosphate kinase; PRIAM: Polyphosphate kinase; SPTR: Polyphosphate kinase; TIGRFAM: Polyphosphate kinase; PFAM: Polyphosphate kinase; TIGRFAM: polyphosphate kinase 1; polyphosphate kinase complement(599473..601539) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001301 YP_004045235.1 CDS Riean_0561 NC_014738.1 601641 601973 R KEGG: gfo:GFO_1885 membrane protein; SPTR: Membrane protein; membrane protein complement(601641..601973) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001302 YP_004045236.1 CDS Riean_0562 NC_014738.1 601993 602271 R KEGG: fps:FP0741 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2752); hypothetical protein complement(601993..602271) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001303 YP_004045237.1 CDS Riean_0563 NC_014738.1 602817 603827 D COGs: COG3023 Negative regulator of beta-lactamase expression; InterPro IPR002502: IPR002477; KEGG: fba:FIC_00579 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; Peptidoglycan-binding domain 1 protein; SMART: N-acetylmuramoyl-L-alanine amidase family 2; SPTR: Possible N-acetylmuramoyl-L-alanine amidase; PFAM: Putative peptidoglycan binding domain; N-acetylmuramoyl-L-alanine amidase; n-acetylmuramyl-l-alanine amidase, negative regulator of ampc, ampd 602817..603827 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001307 YP_004045238.1 CDS Riean_0564 NC_014738.1 603853 604668 R KEGG: fba:FIC_00703 aminodeoxychorismate lyase; SPTR: BrancheD-chain-amino-acid transaminase; PFAM: Aminotransferase class IV; aminodeoxychorismate lyase complement(603853..604668) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001308 YP_004045239.1 CDS Riean_0565 NC_014738.1 604739 605155 R KEGG: fba:FIC_00702 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein; hypothetical protein complement(604739..605155) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001309 YP_004045240.1 CDS Riean_0566 NC_014738.1 605301 607232 D COGs: COG1368 Phosphoglycerol transferase and related protein alkaline phosphatase superfamily; InterPro IPR012160: IPR000917; KEGG: fba:FIC_00695 probable phosphoglycerol transferase; PFAM: sulfatase; SPTR: Probable sulfatase; PFAM: Sulfatase; sulfatase 605301..607232 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001310 YP_004045241.1 CDS Riean_0567 NC_014738.1 607353 607772 D COGs: COG4731 conserved hypothetical protein; InterPro IPR019223; KEGG: fba:FIC_00696 hypothetical protein; PFAM: Protein of unknown function DUF2147; SPTR: Putative uncharacterized protein; manually curated; PFAM: Uncharacterized protein conserved in bacteria (DUF2147); hypothetical protein 607353..607772 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001311 YP_004045242.1 CDS Riean_0568 NC_014738.1 607845 608390 R KEGG: fba:FIC_00434 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(607845..608390) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001312 YP_004045243.1 CDS Riean_0569 NC_014738.1 608401 609411 R COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: fba:FIC_01861 3-beta hydroxysteroid dehydrogenase/isomerase family protein; PFAM: NAD-dependent epimerase/dehydratase; SPTR: Dihydroflavonol 4-reductase family protein; PFAM: NAD dependent epimerase/dehydratase family; naD-dependent epimerase/dehydratase complement(608401..609411) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001313 YP_004045244.1 CDS Riean_0570 NC_014738.1 609423 610208 R COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: fba:FIC_01862 alpha/beta superfamily hydrolase; PFAM: alpha/beta hydrolase fold; SPTR: Alpha/beta superfamily hydrolase; PFAM: alpha/beta hydrolase fold; alpha/beta fold family hydrolase complement(609423..610208) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001314 YP_004045245.1 CDS Riean_0571 NC_014738.1 610202 610921 R COGs: COG0854 Pyridoxal phosphate biosynthesis protein; InterPro IPR004569; KEGG: fba:FIC_01863 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate biosynthetic protein PdxJ; PRIAM: Pyridoxine 5'-phosphate synthase; SPTR: Pyridoxine 5'-phosphate synthase; TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; PFAM: Pyridoxal phosphate biosynthesis protein PdxJ; TIGRFAM: pyridoxine 5'-phosphate synthase; pyridoxine 5'-phosphate synthase complement(610202..610921) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001315 YP_004045246.1 CDS Riean_0572 NC_014738.1 610947 612269 R COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: fba:FIC_01864 MscS mechanosensitive ion channel; PFAM: MscS Mechanosensitive ion channel; SPTR: MscS Mechanosensitive ion channel; PFAM: Mechanosensitive ion channel; mscs mechanosensitive ion channel complement(610947..612269) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001316 YP_004045247.1 CDS Riean_0573 NC_014738.1 612283 612768 D COGs: COG2839 conserved hypothetical protein; InterPro IPR007403; KEGG: fba:FIC_01865 hypothetical protein; PFAM: protein of unknown function DUF456; SPTR: Protein of hypothetical function DUF456; PFAM: Protein of unknown function (DUF456); hypothetical protein 612283..612768 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001317 YP_004045248.1 CDS Riean_0574 NC_014738.1 612849 614870 R COGs: COG0339 Zn-dependent oligopeptidase; InterPro IPR001567: IPR002160; KEGG: fba:FIC_00709 peptidyl-dipeptidase; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; PRIAM: Oligopeptidase A; SPTR: Peptidyl-dipeptidase Dcp1; PFAM: Peptidase family M3; oligopeptidase a complement(612849..614870) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001318 YP_004045249.1 CDS Riean_0575 NC_014738.1 614970 616391 R COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006664: IPR006665; KEGG: fba:FIC_02166 thrombospondin type 3 repeat:OmpA/MotB; PFAM: OmpA/MotB domain protein; SPTR: Thrombospondin type 3 repeat:OmpA/MotB; PFAM: OmpA family; ompa/motb domain-containing protein complement(614970..616391) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001319 YP_004045250.1 CDS Riean_0576 NC_014738.1 616409 617830 R COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006664: IPR006665: IPR006690; KEGG: fba:FIC_02166 thrombospondin type 3 repeat:OmpA/MotB; PFAM: OmpA/MotB domain protein; SPTR: Thrombospondin type 3 repeat:OmpA/MotB; PFAM: OmpA family; ompa/motb domain-containing protein complement(616409..617830) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001320 YP_004045251.1 CDS Riean_0577 NC_014738.1 617827 618276 R COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; InterPro IPR000550; KEGG: aps:CFPG_427 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; SPTR: Possible 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropte ridinepyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(617827..618276) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001321 YP_004045252.1 CDS Riean_0578 NC_014738.1 618298 620052 D COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR004634: IPR002142: IPR004635; KEGG: fba:FIC_02168 protease IV; PFAM: peptidase S49; SPTR: Signal peptide peptidase SppA; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type; signal peptide peptidase SppA, 67K type; signal peptide peptidase sppa, 67k type 618298..620052 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001322 YP_004045253.1 CDS Riean_0579 NC_014738.1 620137 620583 R COGs: COG1490 D-Tyr-tRNAtyr deacylase; InterPro IPR003732; KEGG: fba:FIC_02133 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; SPTR: D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; D-tyrosyl-tRNA(tyr) deacylase complement(620137..620583) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001323 YP_004045254.1 CDS Riean_0580 NC_014738.1 620589 621053 R KEGG: fba:FIC_02132 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(620589..621053) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001324 YP_004045255.1 CDS Riean_0581 NC_014738.1 621156 621623 D COGs: COG0782 Transcription elongation factor; InterPro IPR001437: IPR006359: IPR018151; KEGG: fba:FIC_02131 transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain-containing protein; SPTR: Transcription elongation factor; TIGRFAM: transcription elongation factor GreA; PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreA; transcription elongation factor grea 621156..621623 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001325 YP_004045256.1 CDS Riean_0582 NC_014738.1 621642 622028 D COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310; KEGG: fba:FIC_02130 HIT family protein; PFAM: histidine triad (HIT) protein; SPTR: Histidine triad nucleotide-binding protein; PFAM: HIT domain; histidine triad (hit) protein 621642..622028 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001326 YP_004045257.1 CDS Riean_0583 NC_014738.1 622066 623238 D COGs: COG1219 ATP-dependent protease Clp ATPase subunit; InterPro IPR010603: IPR013093: IPR019489: IPR004487: IPR 002078: IPR003593; KEGG: fba:FIC_02129 ATP-dependent Clp protease ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: ATP-dependent Clp protease ATP-binding subunit clpX; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX); sigma 54 interacting domain-containing protein 622066..623238 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001327 YP_004045258.1 CDS Riean_0585 NC_014738.1 625288 625539 D KEGG: fba:FIC_02127 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 625288..625539 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001329 YP_004045259.1 CDS Riean_0586 NC_014738.1 625577 626872 D InterPro IPR017936: IPR013740; KEGG: fba:FIC_02126 lipoprotein/thioderoxin; PFAM: Redoxin domain protein; SPTR: Possible thiol:disulfide interchange protein; manually curated; PFAM: Redoxin; redoxin domain-containing protein 625577..626872 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001330 YP_004045260.1 CDS Riean_0587 NC_014738.1 627082 629229 D COGs: COG1193 Mismatch repair ATPase (MutS family); InterPro IPR005747: IPR000432: IPR007696; KEGG: fba:FIC_01868 recombination inhibitory protein MutS2; PFAM: DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; SPTR: DNA mismatch repair protein MutS domain protein; PFAM: MutS domain V; DNA mismatch repair protein MutS domain-containing protein 627082..629229 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001332 YP_004045261.1 CDS Riean_0588 NC_014738.1 629297 631423 D COGs: COG2183 Transcriptional accessory protein; InterPro IPR003029: IPR018974: IPR006641: IPR003583; KEGG: fba:FIC_00898 RNA binding protein with S1 RNA-binding domain; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; Helix-hairpin-helix DNA-binding class 1; SPTR: Transcription accessory protein; PFAM: Tex-like protein N-terminal domain; S1 RNA binding domain; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region; tex-like protein 629297..631423 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001333 YP_004045262.1 CDS Riean_0589 NC_014738.1 631491 632474 D COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; InterPro IPR005475: IPR005476; KEGG: fba:FIC_00697 pyruvate dehydrogenase E1 component beta subunit; PFAM: Transketolase central region; Transketolase domain-containing protein; PRIAM: Pyruvate dehydrogenase (acetyl-transferring); SPTR: Pyruvate dehydrogenase (Lipoamide) E1 component, beta subunit; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; pyruvate dehydrogenase (acetyl-transferring) 631491..632474 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001334 YP_004045263.1 CDS Riean_0591 NC_014738.1 632980 635772 R InterPro IPR004843; KEGG: hch:HCH_06682 phosphohydrolase; PFAM: metallophosphoesterase; SPTR: Ser/Thr protein phosphatase family protein; metallophosphoesterase complement(632980..635772) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001336 YP_004045264.1 CDS Riean_0592 NC_014738.1 635985 636419 R KEGG: bvu:BVU_3258 alpha-glycosidase; SPTR: Glycoside hydrolase family 15, candidate alpha-glycosidase; hypothetical protein complement(635985..636419) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001337 YP_004045265.1 CDS Riean_0594 NC_014738.1 637766 638770 R COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterPro IPR020832: IPR020831: IPR020828: IPR020829: IPR 006424: IPR020830; KEGG: fba:FIC_00681 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; glyceraldehyde-3-phosphate dehydrogenase, type i complement(637766..638770) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001339 YP_004045266.1 CDS Riean_0595 NC_014738.1 638862 639848 R COGs: COG0205 6-phosphofructokinase; InterPro IPR000023: IPR012003: IPR012828: IPR015912; KEGG: fba:FIC_00682 6-phosphofructokinase; PFAM: phosphofructokinase; SPTR: 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: Phosphofructokinase; TIGRFAM: 6-phosphofructokinase; 6-phosphofructokinase complement(638862..639848) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001340 YP_004045267.1 CDS Riean_0596 NC_014738.1 639990 640331 D KEGG: fba:FIC_00683 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 639990..640331 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001341 YP_004045268.1 CDS Riean_0597 NC_014738.1 640415 642766 D COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: fba:FIC_00684 outer membrane hemin receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Outer membrane hemin receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; tonb-dependent receptor plug 640415..642766 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001342 YP_004045269.1 CDS Riean_0598 NC_014738.1 642804 643370 D KEGG: fba:FIC_00685 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 642804..643370 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001343 YP_004045270.1 CDS Riean_0599 NC_014738.1 643440 644090 D InterPro IPR000758; KEGG: coc:Coch_0675 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 643440..644090 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001344 YP_004045271.1 CDS Riean_0600 NC_014738.1 644264 645598 D COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); InterPro IPR008881: IPR005215; KEGG: fba:FIC_00686 cell division trigger factor; PFAM: trigger factor domain-containing protein; SPTR: Cell division trigger factor; TIGRFAM: trigger factor; PFAM: Bacterial trigger factor protein (TF); TIGRFAM: trigger factor; trigger factor 644264..645598 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001345 YP_004045272.1 CDS Riean_0601 NC_014738.1 645904 646284 D COGs: COG0797 Lipoprotein; InterPro IPR005132: IPR012997; KEGG: fba:FIC_01926 rare lipoprotein A; PFAM: Rare lipoprotein A; SPTR: Possible lipoprotein; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; TIGRFAM: rare lipoprotein A; rare lipoprotein a 645904..646284 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001346 YP_004045273.1 CDS Riean_0602 NC_014738.1 646350 647111 R COGs: COG0708 Exonuclease III; InterPro IPR004808: IPR005135: IPR000097; KEGG: fba:FIC_01919 exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SPTR: Exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth); exodeoxyribonuclease iii xth complement(646350..647111) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001347 YP_004045274.1 CDS Riean_0603 NC_014738.1 647127 648104 R COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR001269: IPR004652: IPR018517; KEGG: fba:FIC_01903 tRNA dihydrouridine synthase B; PFAM: dihydrouridine synthase DuS; SPTR: tRNA-dihydrouridine synthase; TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: Dihydrouridine synthase (Dus); TIGRFAM: TIM-barrel protein, nifR3 family; tRNA-u20-dihydrouridine synthase complement(647127..648104) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001348 YP_004045275.1 CDS Riean_0604 NC_014738.1 648154 651432 R KEGG: fba:FIC_00720 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(648154..651432) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001349 YP_004045276.1 CDS Riean_0605 NC_014738.1 651523 652296 D KEGG: fba:FIC_00723 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 651523..652296 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001350 YP_004045277.1 CDS Riean_0606 NC_014738.1 652311 653039 D KEGG: fba:FIC_00722 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 652311..653039 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001351 YP_004045278.1 CDS Riean_0607 NC_014738.1 653151 653945 D COGs: COG0207 Thymidylate synthase; InterPro IPR000398: IPR020940; KEGG: fba:FIC_01771 thymidylate synthase; PFAM: thymidylate synthase; PRIAM: Thymidylate synthase; SPTR: Thymidylate synthase; TIGRFAM: thymidylate synthase; PFAM: Thymidylate synthase; TIGRFAM: thymidylate synthase; thymidylate synthase 653151..653945 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001352 YP_004045279.1 CDS Riean_0608 NC_014738.1 653991 656501 D COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: fba:FIC_01769 aminopeptidase; PFAM: Peptidase M1 membrane alanine aminopeptidase; SPTR: Membrane alanine aminopeptidase; PFAM: Peptidase family M1; peptidase m1 membrane alanine aminopeptidase 653991..656501 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001353 YP_004045280.1 CDS Riean_0610 NC_014738.1 657331 658203 R COGs: COG0074 Succinyl-CoA synthetase alpha subunit; InterPro IPR005810: IPR003781: IPR005811: IPR017440; KEGG: fba:FIC_01908 succinyl-CoA ligase [ADP-forming] alpha chain; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; SPTR: Succinyl-CoA ligase [ADP-forming] subunit alpha; TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA binding domain; CoA-ligase; TIGRFAM: succinyl-CoA synthetase, alpha subunit; succinyl-CoA synthetase subunit alpha complement(657331..658203) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001355 YP_004045281.1 CDS Riean_0611 NC_014738.1 658308 659210 R COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); InterPro IPR020573: IPR001451; KEGG: fba:FIC_01910 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; transferase hexapeptide repeat containing protein; SPTR: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Bacterial transferase hexapeptide (three repeats); TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-o-(3-hydroxymyristoyl) glucosamine n-acyltransferase, non-repeat region complement(658308..659210) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001356 YP_004045282.1 CDS Riean_0612 NC_014738.1 659274 659837 R COGs: COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); InterPro IPR020599: IPR013185: IPR001059: IPR015365: IPR 011768: IPR013852; KEGG: fba:FIC_01911 elongation factor P; PFAM: Elongation factor P; Elongation factor KOW-like domain-containing protein; Elongation factor P/YeiP protein; SPTR: Elongation factor P; TIGRFAM: translation elongation factor P; PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P; translation elongation factor p (ef-p) complement(659274..659837) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001357 YP_004045283.1 CDS Riean_0613 NC_014738.1 659864 660652 R COGs: COG1043 Acyl-(acyl carrier protein); InterPro IPR010137: IPR001451; KEGG: fba:FIC_01912 UDP-N-acetylglucosamine acyltransferase; PRIAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgluc osamineO-acyltransferase; SPTR:Acyl-[acyl-carrier-protein]--UDP-N-acetylgluco samineO-acyltransferase; TIGRFAM:acyl-[acyl-carrier-protein]--UDP-N-acetylgl ucosamineO-acyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; acyl-(acyl-carrier-protein)--udp-n- acetylglucosamine o-acyltransferase complement(659864..660652) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001358 YP_004045284.1 CDS Riean_0614 NC_014738.1 660662 662056 R COGs: COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; InterPro IPR004463: IPR013114: IPR010084; KEGG: fba:FIC_01913 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; SPTR: N-acetylglucosamine deacetylase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: FabA-like domain; UDP-3-O-acyl N-acetylglycosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ; 3-hydroxyacyl-(acyl-carrier-protein) dehydratase complement(660662..662056) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001359 YP_004045285.1 CDS Riean_0615 NC_014738.1 662049 663083 R COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); InterPro IPR020573: IPR001451: IPR007691; KEGG: fba:FIC_01914 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; transferase hexapeptide repeat containing protein; SPTR: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Bacterial transferase hexapeptide (three repeats); TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-o-(3-hydroxymyristoyl) glucosamine n-acyltransferase complement(662049..663083) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001360 YP_004045286.1 CDS Riean_0616 NC_014738.1 663167 664378 R COGs: COG1078 HD superfamily phosphohydrolase; InterPro IPR006674: IPR003607; KEGG: fba:FIC_01915 deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: Deoxyguanosinetriphosphate triphosphohydrolase; PFAM: HD domain; metal dependent phosphohydrolase complement(663167..664378) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001361 YP_004045287.1 CDS Riean_0617 NC_014738.1 664432 665439 R COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013342: IPR018110; KEGG: fba:FIC_01897 chloromuconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing protein; SPTR: Chloromuconate cycloisomerase; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; TIGRFAM: o-succinylbenzoic acid (OSB) synthetase; mandelate racemase/muconate lactonizing protein complement(664432..665439) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001362 YP_004045288.1 CDS Riean_0618 NC_014738.1 665439 666455 R COGs: COG0158 Fructose-1 6-bisphosphatase; InterPro IPR000146: IPR020548; KEGG: fba:FIC_01896 fructose-1,6-bisphosphatase; PFAM: Inositol phosphatase/fructose-16-bisphosphatase; SPTR: Fructose-bisphosphatase; PFAM: Fructose-1-6-bisphosphatase; D-fructose 1,6-bisphosphatase complement(665439..666455) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001363 YP_004045289.1 CDS Riean_0619 NC_014738.1 666645 667883 D COGs: COG0527 Aspartokinase; InterPro IPR001341: IPR001048; KEGG: fba:FIC_01895 aspartokinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: Aspartate kinase; SPTR: Aspartokinase; TIGRFAM: aspartate kinase; PFAM: Amino acid kinase family; TIGRFAM: aspartate kinase; aspartate kinase 666645..667883 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001364 YP_004045290.1 CDS Riean_0620 NC_014738.1 667909 669738 D COGs: COG3176 Putative hemolysin; InterPro IPR002123; KEGG: fba:FIC_01894 hemolysin; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: Putative hemolysin; PFAM: Acyltransferase; phospholipid/glycerol acyltransferase 667909..669738 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001365 YP_004045291.1 CDS Riean_0621 NC_014738.1 669980 670588 D KEGG: fba:FIC_01901 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3575); hypothetical protein 669980..670588 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001367 YP_004045292.1 CDS Riean_0622 NC_014738.1 670593 670799 D KEGG: fba:FIC_01902 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 670593..670799 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001368 YP_004045293.1 CDS Riean_0623 NC_014738.1 670860 675512 R COGs: COG0587 DNA polymerase III alpha subunit; InterPro IPR006055: IPR003141: IPR004805: IPR013520: IPR 004013: IPR011708: IPR004365; KEGG: fba:FIC_01380 DNA polymerase III alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; Exonuclease RNase T and DNA polymerase III; nucleic acid binding OB-fold tRNA/helicase-type; SMART: Exonuclease; phosphoesterase PHP domain protein; SPTR: DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; Exonuclease; TIGRFAM: DNA-directed DNA polymerase III (polc); DNA polymerase III subunit alpha complement(670860..675512) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001369 YP_004045294.1 CDS Riean_0624 NC_014738.1 675691 675960 D COGs: COG0184 Ribosomal protein S15P/S13E; InterPro IPR000589: IPR005290; KEGG: fba:FIC_00469 30S ribosomal protein S15; PFAM: ribosomal protein S15; SPTR: 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle; 30S ribosomal protein S15 675691..675960 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001370 YP_004045295.1 CDS Riean_0625 NC_014738.1 676172 678307 D COGs: COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); InterPro IPR004087: IPR012162: IPR001247: IPR015847: IPR 015848: IPR018111: IPR003029: IPR004088; KEGG: fba:FIC_00451 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding; K Homology, type 1, subgroup; RNA binding S1 domain protein; PRIAM: Polyribonucleotide nucleotidyltransferase; SMART: KH domain protein; SPTR: Polyribonucleotide nucleotidyltransferase; TIGRFAM: polyribonucleotide nucleotidyltransferase; PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; Polyribonucleotide nucleotidyltransferase, RNA binding domain; TIGRFAM: polyribonucleotide nucleotidyltransferase; polyribonucleotide nucleotidyltransferase 676172..678307 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001371 YP_004045296.1 CDS Riean_0626 NC_014738.1 678441 679457 D KEGG: fba:FIC_02100 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 678441..679457 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001372 YP_004045297.1 CDS Riean_0627 NC_014738.1 679547 680473 D COGs: COG0039 Malate/lactate dehydrogenase; InterPro IPR001557: IPR011275: IPR001236; KEGG: fba:FIC_02092 malate dehydrogenase; PFAM: Lactate/malate dehydrogenase; SPTR: Malate dehydrogenase; PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase, NAD-dependent; malate dehydrogenase (nad) 679547..680473 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001373 YP_004045298.1 CDS Riean_0628 NC_014738.1 680589 682493 D COGs: COG0514 Superfamily II DNA helicase; InterPro IPR014001: IPR001650: IPR018329: IPR011545: IPR 014021; KEGG: fba:FIC_02165 ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase, recq family 680589..682493 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001374 YP_004045299.1 CDS Riean_0629 NC_014738.1 682490 683443 D COGs: COG0223 Methionyl-tRNA formyltransferase; InterPro IPR005794: IPR002376: IPR005793; KEGG: fba:FIC_02164 methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; SPTR: Methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 682490..683443 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001375 YP_004045300.1 CDS Riean_0630 NC_014738.1 683525 684340 D COGs: COG0796 Glutamate racemase; InterPro IPR004391: IPR018187: IPR015942; KEGG: fba:FIC_00315 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; PRIAM: Glutamate racemase; SPTR: Glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: glutamate racemase; glutamate racemase 683525..684340 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001376 YP_004045301.1 CDS Riean_0631 NC_014738.1 684380 685372 R COGs: COG0113 Delta-aminolevulinic acid dehydratase; InterPro IPR001731; KEGG: fba:FIC_01844 porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; PRIAM: Porphobilinogen synthase; SPTR: Delta-aminolevulinic acid dehydratase; PFAM: Delta-aminolevulinic acid dehydratase; porphobilinogen synthase complement(684380..685372) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001377 YP_004045302.1 CDS Riean_0632 NC_014738.1 685480 685836 D KEGG: fba:FIC_01843 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 685480..685836 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001378 YP_004045303.1 CDS Riean_0633 NC_014738.1 685922 686455 D COGs: COG0228 Ribosomal protein S16; InterPro IPR000307; KEGG: fba:FIC_01831 SSU ribosomal protein S16p; PFAM: ribosomal protein S16; SPTR: 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; 30S ribosomal protein s16p 685922..686455 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001379 YP_004045304.1 CDS Riean_0634 NC_014738.1 686473 686997 D COGs: COG0806 RimM protein required for 16S rRNA processing; InterPro IPR011961: IPR007903; KEGG: fba:FIC_01830 16S rRNA processing protein RimM; PFAM: PRC-barrel domain protein; SPTR: Ribosome maturation factor rimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: PRC-barrel domain; RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM; 16S rRNA processing protein rimm 686473..686997 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001380 YP_004045305.1 CDS Riean_0635 NC_014738.1 687146 687775 D COGs: COG0602 Organic radical activating protein; InterPro IPR007197; KEGG: fba:FIC_00125 queuosine biosynthesis QueE radical SAM; PFAM: Radical SAM domain protein; SPTR: Organic radical activating enzyme; PFAM: Radical SAM superfamily; radical SAM domain-containing protein 687146..687775 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001381 YP_004045306.1 CDS Riean_0636 NC_014738.1 687783 689114 D COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR017475: IPR003362; KEGG: fba:FIC_00124 glycosyltransferase; PFAM: sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: Glycosyltransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 687783..689114 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001382 YP_004045307.1 CDS Riean_0637 NC_014738.1 689153 689914 D COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: fba:FIC_00123 ABC-type transport system involved in resistance to organic solvents, permease component; PFAM: protein of unknown function DUF140; SPTR: ABC-type transport system involved in resistance to organic solvents, permease component; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein; hypothetical protein 689153..689914 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001383 YP_004045308.1 CDS Riean_0638 NC_014738.1 689914 690690 D COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003593: IPR017871: IPR003439; KEGG: fba:FIC_00122 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter; ABC transporter 689914..690690 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001384 YP_004045309.1 CDS Riean_0639 NC_014738.1 690705 691328 D KEGG: fba:FIC_00121 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 690705..691328 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001385 YP_004045310.1 CDS Riean_0640 NC_014738.1 691364 691666 R KEGG: fba:FIC_00120 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(691364..691666) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001386 YP_004045311.1 CDS Riean_0641 NC_014738.1 691721 692533 R COGs: COG4783 Putative Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: fba:FIC_00119 zn-dependent protease with chaperone function; PFAM: peptidase M48 Ste24p; SPTR: Zn-dependent protease with chaperone function; PFAM: Peptidase family M48; peptidase m48 ste24p complement(691721..692533) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001387 YP_004045312.1 CDS Riean_0642 NC_014738.1 692815 694572 D COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR020845: IPR000873; KEGG: fba:FIC_01860 long-chain-fatty-aciD--CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: Long-chain-fatty-aciD--CoA ligase; PFAM: AMP-binding enzyme; amp-dependent synthetase and ligase 692815..694572 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001388 YP_004045313.1 CDS Riean_0643 NC_014738.1 694608 695666 D COGs: COG3407 Mevalonate pyrophosphate decarboxylase; InterPro IPR005935: IPR006204; KEGG: fba:FIC_01859 diphosphomevalonate decarboxylase; PFAM: GHMP kinase; SPTR: Mevalonate diphosphate decarboxylase; TIGRFAM: diphosphomevalonate decarboxylase; ghmp kinase 694608..695666 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001389 YP_004045314.1 CDS Riean_0644 NC_014738.1 695682 696059 D InterPro IPR004360; KEGG: fjo:Fjoh_4919 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Lactoylglutathione lyase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; glyoxalase/bleomycin resistance protein/dioxygenase 695682..696059 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001390 YP_004045315.1 CDS Riean_0645 NC_014738.1 696094 697203 D COGs: COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); InterPro IPR005875: IPR003135: IPR011761; KEGG: fba:FIC_01755 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: Phosphoribosylaminoimidazole carboxylase ATPase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-grasp domain; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurK protein; 5-(carboxyamino)imidazole ribonucleotide synthase 696094..697203 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001391 YP_004045316.1 CDS Riean_0646 NC_014738.1 697232 697732 D COGs: COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; InterPro IPR000031; KEGG: fba:FIC_01753 phosphoribosylaminoimidazole carboxylase catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: Phosphoribosylaminoimidazole carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein; 5-(carboxyamino)imidazole ribonucleotide mutase 697232..697732 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001392 YP_004045317.1 CDS Riean_0647 NC_014738.1 697770 698483 D KEGG: ckr:CKR_2523 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 697770..698483 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001393 YP_004045318.1 CDS Riean_0648 NC_014738.1 698512 699153 R COGs: COG0400 esterase; InterPro IPR003140; KEGG: fba:FIC_01751 phospholipase/carboxylesterase family protein; PFAM: phospholipase/Carboxylesterase; SPTR: Phospholipase/carboxylesterase family protein; PFAM: Phospholipase/Carboxylesterase; phospholipase/carboxylesterase complement(698512..699153) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001394 YP_004045319.1 CDS Riean_0649 NC_014738.1 699161 700453 R COGs: COG0162 Tyrosyl-tRNA synthetase; InterPro IPR002307: IPR002305: IPR002942; KEGG: fba:FIC_01749 tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein; PRIAM: Tyrosine--tRNA ligase; SPTR: Tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase; tyrosyl-tRNA synthetase complement(699161..700453) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001395 YP_004045320.1 CDS Riean_0650 NC_014738.1 700663 701274 D KEGG: fps:FP0287 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 700663..701274 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001396 YP_004045321.1 CDS Riean_0651 NC_014738.1 701277 701879 D KEGG: fps:FP0287 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 701277..701879 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001397 YP_004045322.1 CDS Riean_0652 NC_014738.1 701882 702490 D KEGG: fps:FP0287 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 701882..702490 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001398 YP_004045323.1 CDS Riean_0653 NC_014738.1 702535 703041 D KEGG: fps:FP0287 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 702535..703041 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001399 YP_004045324.1 CDS Riean_0654 NC_014738.1 703060 706221 D KEGG: fps:FP0285 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 703060..706221 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001400 YP_004045325.1 CDS Riean_0655 NC_014738.1 706311 707069 D KEGG: fps:FP1876 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 706311..707069 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001401 YP_004045326.1 CDS Riean_0656 NC_014738.1 707415 708107 D COGs: COG2968 conserved hypothetical protein; InterPro IPR007497; KEGG: rbi:RB2501_03085 hypothetical protein; PFAM: protein of unknown function DUF541; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF541); hypothetical protein 707415..708107 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001402 YP_004045327.1 CDS Riean_0657 NC_014738.1 708126 708605 R COGs: COG0328 Ribonuclease HI; InterPro IPR002156; KEGG: fba:FIC_02358 ribonuclease HI; PFAM: ribonuclease H; PRIAM: Ribonuclease H; SPTR: Ribonuclease H; PFAM: RNase H; ribonuclease h complement(708126..708605) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001403 YP_004045328.1 CDS Riean_0658 NC_014738.1 708606 710177 R COGs: COG0305 Replicative DNA helicase; InterPro IPR003593: IPR007692: IPR007693: IPR007694; KEGG: fba:FIC_02357 replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; SPTR: Replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase; primary replicative DNA helicase complement(708606..710177) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001404 YP_004045329.1 CDS Riean_0659 NC_014738.1 710302 711114 R COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR011268: IPR011270: IPR000845; KEGG: coc:Coch_1936 inosine guanosine and xanthosine phosphorylase family; PFAM: purine or other phosphorylase family 1; SPTR: Purine-nucleoside phosphorylase; TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase family; PFAM: Phosphorylase superfamily; TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase family; purine nucleoside phosphorylase i, inosine and guanosine-specific complement(710302..711114) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001405 YP_004045330.1 CDS Riean_0660 NC_014738.1 711098 712123 R COGs: COG1663 Tetraacyldisaccharide-1-P 4'-kinase; InterPro IPR003758; KEGG: fba:FIC_02186 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; PRIAM: Tetraacyldisaccharide 4'-kinase; SPTR: Tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; lipiD-a-disaccharide kinase complement(711098..712123) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001406 YP_004045331.1 CDS Riean_0661 NC_014738.1 712321 713451 D COGs: COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins; InterPro IPR005956: IPR004360; KEGG: phe:Phep_3281 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; PRIAM: 4-hydroxyphenylpyruvate dioxygenase; SPTR: 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 712321..713451 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001407 YP_004045332.1 CDS Riean_0662 NC_014738.1 713513 713983 D KEGG: fba:FIC_00443 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 713513..713983 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001408 YP_004045333.1 CDS Riean_0663 NC_014738.1 713987 715237 D COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR005959: IPR015377: IPR002529; KEGG: fba:FIC_00442 fumarylacetoacetase; PFAM: Domain of unknown function DUF1969; fumarylacetoacetate (FAA) hydrolase; PRIAM: Fumarylacetoacetase; SPTR: Fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: Domain of unknown function (DUF1969); Fumarylacetoacetate (FAA) hydrolase family; TIGRFAM: fumarylacetoacetase; fumarylacetoacetase 713987..715237 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001409 YP_004045334.1 CDS Riean_0664 NC_014738.1 715298 715951 R InterPro IPR019619; KEGG: gfo:GFO_3452 hypothetical protein; PFAM: Protein of unknown function DUF2490; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2490); hypothetical protein complement(715298..715951) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001410 YP_004045335.1 CDS Riean_0665 NC_014738.1 716046 717431 R COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR013027: IPR000815: IPR012999: IPR006258: IPR 004099; KEGG: fba:FIC_01048 dihydrolipoamide dehydrogenase of brancheD-chain alpha-keto acid dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SPTR: Dihydrolipoyl dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase complement(716046..717431) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001411 YP_004045336.1 CDS Riean_0666 NC_014738.1 717589 718887 R COGs: COG1668 ABC-type Na+ efflux pump permease component; KEGG: fba:FIC_01906 hypothetical protein; SPTR: ABC superfamily ATP binding cassette transporter, permease protein; hypothetical protein complement(717589..718887) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001412 YP_004045337.1 CDS Riean_0667 NC_014738.1 718894 719799 R COGs: COG4152 ABC-type uncharacterized transport system ATPase component; InterPro IPR003593: IPR017871: IPR003439; KEGG: fba:FIC_01905 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter; ABC transporter complement(718894..719799) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001413 YP_004045338.1 CDS Riean_0668 NC_014738.1 719911 721026 R COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR003095: IPR001623: IPR012724: IPR018253: IPR 001305: IPR002939; KEGG: fba:FIC_01631 chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; DnaJ central domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: Chaperone CbpA; TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ domain; DnaJ C terminal region; DnaJ central domain (4 repeats); TIGRFAM: chaperone protein DnaJ; chaperone protein dnaj complement(719911..721026) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001414 YP_004045339.1 CDS Riean_0669 NC_014738.1 721077 721628 R COGs: COG0576 Molecular chaperone GrpE (heat shock protein); InterPro IPR000740; KEGG: fba:FIC_01632 heat shock protein GrpE; PFAM: GrpE protein; SPTR: Protein grpE; PFAM: GrpE; grpe protein complement(721077..721628) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001415 YP_004045340.1 CDS Riean_0670 NC_014738.1 721715 723046 R COGs: COG1914 Mn2+ and Fe2+ transporter of the NRAMP family; InterPro IPR001046; KEGG: fba:FIC_01634 manganese transport protein MntH; PFAM: natural resistance-associated macrophage protein; SPTR: Manganese transport protein MntH; TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: Natural resistance-associated macrophage protein; TIGRFAM: NRAMP (natural resistance-associated macrophage protein) metal ion transporters; mn2+/fe2+ transporter, nramp family complement(721715..723046) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001416 YP_004045341.1 CDS Riean_0671 NC_014738.1 723165 724604 R KEGG: fba:FIC_01638 hemin receptor; SPTR: Probable hemin receptor; hemin receptor complement(723165..724604) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001417 YP_004045342.1 CDS Riean_0672 NC_014738.1 724642 725685 R KEGG: fba:FIC_01637 Vitellogenin II precursor; SPTR: Glycine-rich protein; vitellogenin ii complement(724642..725685) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001418 YP_004045343.1 CDS Riean_0673 NC_014738.1 725849 727324 D COGs: COG0442 Prolyl-tRNA synthetase; InterPro IPR004499: IPR002314: IPR004154: IPR016061: IPR 006195; KEGG: fba:FIC_01636 prolyl-tRNA synthetase; PFAM: Prolyl-tRNA synthetase, class II-like; Anticodon-binding domain protein; tRNA synthetase class II (G H P and S); SPTR: Prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: Anticodon binding domain; Prolyl-tRNA synthetase, C-terminal; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: prolyl-tRNA synthetase, family I; prolyl-tRNA synthetase 725849..727324 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001419 YP_004045344.1 CDS Riean_0674 NC_014738.1 727352 728545 D InterPro IPR000074; KEGG: fba:FIC_01635 OmpA/MotB; PFAM: Apolipoprotein A1/A4/E; SPTR: OmpA/MotB domain protein; PFAM: Late embryogenesis abundant protein; apolipoprotein a1/a4/e 727352..728545 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001420 YP_004045345.1 CDS Riean_0675 NC_014738.1 728609 729259 R COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056; KEGG: fba:FIC_01357 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: Ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(728609..729259) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001421 YP_004045346.1 CDS Riean_0676 NC_014738.1 729343 730209 R COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterPro IPR000943: IPR014284: IPR009042: IPR007627: IPR 007624: IPR007630; KEGG: fba:FIC_01410 RNA polymerase sigma factor RpoD; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 3 domain protein; SPTR: RNA polymerase sigma factor RpoD; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase, sigma 70 subunit, rpod subfamily complement(729343..730209) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001422 YP_004045347.1 CDS Riean_0677 NC_014738.1 730311 730877 R COGs: COG0386 Glutathione peroxidase; InterPro IPR000889; KEGG: fba:FIC_01428 glutathione peroxidase; PFAM: glutathione peroxidase; PRIAM: Peroxiredoxin; SPTR: Glutathione peroxidase; PFAM: Glutathione peroxidase; peroxiredoxin complement(730311..730877) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001423 YP_004045348.1 CDS Riean_0678 NC_014738.1 730897 731565 R KEGG: fba:FIC_01429 hypothetical signal peptide-containing protein; SPTR: Hypothetical signal peptide-containing protein; hypothetical protein complement(730897..731565) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001424 YP_004045349.1 CDS Riean_0679 NC_014738.1 731583 732317 R COGs: COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; InterPro IPR004528: IPR003329; KEGG: fba:FIC_01430 3-deoxy-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; SPTR: 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: Cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase complement(731583..732317) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001425 YP_004045350.1 CDS Riean_0680 NC_014738.1 732328 733131 R InterPro IPR013247; KEGG: cpi:Cpin_3584 hypothetical protein; PFAM: SH3 type 3 domain protein; SPTR: Putative uncharacterized protein; PFAM: Bacterial SH3 domain; sh3 type 3 domain-containing protein complement(732328..733131) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001426 YP_004045351.1 CDS Riean_0681 NC_014738.1 733146 734399 R COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: fba:FIC_01433 aminotransferase, class I; PFAM: aminotransferase class I and II; SPTR: Possible aspartate transaminase; PFAM: Aminotransferase class I and II; aminotransferase class i and ii complement(733146..734399) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001427 YP_004045352.1 CDS Riean_0682 NC_014738.1 734423 736144 R COGs: COG1109 Phosphomannomutase; InterPro IPR005841: IPR016066: IPR005844: IPR005845; KEGG: fba:FIC_01434 phosphoglucomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; SPTR: Phosphoglucomutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain i complement(734423..736144) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001428 YP_004045353.1 CDS Riean_0683 NC_014738.1 736168 736872 R KEGG: fba:FIC_01435 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2807); hypothetical protein complement(736168..736872) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001429 YP_004045354.1 CDS Riean_0684 NC_014738.1 736884 737834 R COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: fba:FIC_01436 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Probable glycosyltransferase; PFAM: Glycosyl transferase family 2; family 2 glycosyl transferase complement(736884..737834) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001430 YP_004045355.1 CDS Riean_0685 NC_014738.1 737853 738434 R KEGG: fba:FIC_01437 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(737853..738434) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001431 YP_004045356.1 CDS Riean_0686 NC_014738.1 738953 739324 R InterPro IPR000889: IPR011467; KEGG: fba:FIC_02274 hypothetical protein; PFAM: protein of unknown function DUF1573; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1573); hypothetical protein complement(738953..739324) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001433 YP_004045357.1 CDS Riean_0687 NC_014738.1 739540 742158 D COGs: COG0525 Valyl-tRNA synthetase; InterPro IPR019754: IPR001412: IPR002303: IPR002300: IPR 013155: IPR019499; KEGG: fba:FIC_02273 valyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodon-binding; Valyl-tRNA synthetase, class Ia, tRNA binding arm; SPTR: Valine--tRNA ligase; TIGRFAM: valyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase; valyl-tRNA synthetase 739540..742158 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001434 YP_004045358.1 CDS Riean_0688 NC_014738.1 742164 742805 D KEGG: fba:FIC_02272 cytoplasmic protein; SPTR: Probable cytoplasmic protein; hypothetical protein 742164..742805 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001435 YP_004045359.1 CDS Riean_0689 NC_014738.1 742821 743714 D COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR002139: IPR002173: IPR011611; KEGG: fba:FIC_02271 ribokinase; PFAM: PfkB domain protein; SPTR: Ribokinase; PFAM: pfkB family carbohydrate kinase; TIGRFAM: ribokinase; pfkb domain-containing protein 742821..743714 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001436 YP_004045360.1 CDS Riean_0690 NC_014738.1 743727 744725 D KEGG: fba:FIC_00674 hypothetical protein; SPTR: Acyl-protein synthetase; PFAM: Acyl-protein synthetase, LuxE; hypothetical protein 743727..744725 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001437 YP_004045361.1 CDS Riean_0691 NC_014738.1 744783 745373 D KEGG: fjo:Fjoh_1918 hypothetical protein; SPTR: Hypothetical lipoprotein; hypothetical protein 744783..745373 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001438 YP_004045362.1 CDS Riean_0692 NC_014738.1 745447 746925 R COGs: COG2270 Permease of the major facilitator superfamily; InterPro IPR011701; KEGG: fba:FIC_00966 hypothetical protein; PFAM: major facilitator superfamily MFS_1; SPTR: Permease; PFAM: Vacuole effluxer Atg22 like; major facilitator superfamily protein complement(745447..746925) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001439 YP_004045363.1 CDS Riean_0693 NC_014738.1 747038 748216 R COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR020615: IPR020610: IPR020613: IPR002155: IPR 020616: IPR020617; KEGG: fba:FIC_00965 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; SPTR: Acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; acetyl-CoA acetyltransferase complement(747038..748216) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001440 YP_004045364.1 CDS Riean_0694 NC_014738.1 748588 750354 R COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000587: IPR000994; KEGG: aag:AaeL_AAEL015629 xaa-pro aminopeptidase; PFAM: peptidase M24; creatinase; PRIAM: Xaa-Pro aminopeptidase; SPTR: Xaa-pro aminopeptidase; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain; xaa-pro aminopeptidase complement(748588..750354) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001441 YP_004045365.1 CDS Riean_0695 NC_014738.1 751013 752638 D COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR016160: IPR005931: IPR015590; KEGG: fba:FIC_02392 delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: 1-pyrroline-5-carboxylate dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase, group 1; delta-1-pyrroline-5-carboxylate dehydrogenase 751013..752638 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001442 YP_004045366.1 CDS Riean_0696 NC_014738.1 752699 753379 R COGs: COG0220 S-adenosylmethionine-dependent methyltransferase; InterPro IPR003358; KEGG: fba:FIC_01965 tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase; PRIAM: tRNA (guanine-N(7)-)-methyltransferase; SPTR: tRNA (Guanine46-N7-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: Putative methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; tRNA (guanine-n(7)-)-methyltransferase complement(752699..753379) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001443 YP_004045367.1 CDS Riean_0697 NC_014738.1 753420 754196 R KEGG: fba:FIC_01967 hypothetical protein; SPTR: Secreted protein; hypothetical protein complement(753420..754196) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001444 YP_004045368.1 CDS Riean_0698 NC_014738.1 754300 754956 R KEGG: fba:FIC_01718 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(754300..754956) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001445 YP_004045369.1 CDS Riean_0699 NC_014738.1 755005 756012 R COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: fba:FIC_00245 O-succinylbenzoic aciD-CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein; PFAM: AMP-binding enzyme; amp-dependent synthetase and ligase complement(755005..756012) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001446 YP_004045370.1 CDS Riean_0700 NC_014738.1 756081 757025 R InterPro IPR010916; KEGG: fjo:Fjoh_5008 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(756081..757025) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001447 YP_004045371.1 CDS Riean_0701 NC_014738.1 757029 758075 R COGs: COG1858 Cytochrome c peroxidase; InterPro IPR004852: IPR009056; KEGG: cat:CA2559_06665 probable cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; PRIAM: Cytochrome-c peroxidase; SPTR: Possible cytochrome-c peroxidase; PFAM: Cytochrome c; Di-haem cytochrome c peroxidase; cytochrome-c peroxidase complement(757029..758075) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001448 YP_004045372.1 CDS Riean_0702 NC_014738.1 758161 758976 R KEGG: fps:FP0578 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(758161..758976) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001449 YP_004045373.1 CDS Riean_0703 NC_014738.1 759137 759475 R KEGG: cpi:Cpin_6945 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(759137..759475) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001450 YP_004045374.1 CDS Riean_0704 NC_014738.1 759634 761556 D COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593: IPR017871: IPR003439; KEGG: fba:FIC_02281 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC superfamily ATP binding cassette transporter, ABC protein; PFAM: ABC transporter; ABC transporter 759634..761556 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001451 YP_004045375.1 CDS Riean_0705 NC_014738.1 761686 764544 R COGs: COG1003 Glycine cleavage system protein P (pyridoxal-binding) C-terminal domain; InterPro IPR003437: IPR020580; KEGG: fba:FIC_00985 glycine dehydrogenase; PFAM: Glycine cleavage system P-protein-like; SPTR: Glycine dehydrogenase (Decarboxylating); TIGRFAM: glycine dehydrogenase; PFAM: Glycine cleavage system P-protein; TIGRFAM: glycine dehydrogenase (decarboxylating); glycine dehydrogenase complement(761686..764544) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001452 YP_004045376.1 CDS Riean_0706 NC_014738.1 764986 765612 R COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR003095: IPR001623: IPR018253; KEGG: fba:FIC_00983 membrane protein containing heat shock protein D naJ N-terminal domain; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: Membrane protein containing heat shock protein D naJ N-terminal domain; PFAM: DnaJ domain; heat shock protein dnaj domain-containing protein complement(764986..765612) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001453 YP_004045377.1 CDS Riean_0707 NC_014738.1 765614 766258 R COGs: COG0702 nucleoside-diphosphate-sugar epimerase; KEGG: coc:Coch_1648 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(765614..766258) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001454 YP_004045378.1 CDS Riean_0708 NC_014738.1 766307 766804 R COGs: COG2077 Peroxiredoxin; InterPro IPR018219: IPR013740: IPR017936; KEGG: fba:FIC_00974 thiol peroxidase, TPX-type; PFAM: Redoxin domain protein; SPTR: Thiol peroxidase; PFAM: Redoxin; thiol peroxidase (atypical 2-cys peroxiredoxin) complement(766307..766804) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001455 YP_004045379.1 CDS Riean_0709 NC_014738.1 766957 768345 R COGs: COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); InterPro IPR010096: IPR001750; KEGG: fba:FIC_01673 NADH-ubiquinone oxidoreductase chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: NADH dehydrogenase I chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; NADH dehydrogenase subunit n complement(766957..768345) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001456 YP_004045380.1 CDS Riean_0710 NC_014738.1 768366 769850 R COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); InterPro IPR003918: IPR010227: IPR001750; KEGG: fba:FIC_01672 NADH-ubiquinone oxidoreductase chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: NADH dehydrogenase (Quinone); TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; NADH dehydrogenase subunit m complement(768366..769850) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001457 YP_004045381.1 CDS Riean_0711 NC_014738.1 769854 771746 R COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR003916: IPR018393: IPR003945: IPR001516: IPR 001750; KEGG: fba:FIC_01671 NADH-ubiquinone oxidoreductase chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; SPTR: NADH dehydrogenase I chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; NADH dehydrogenase subunit l complement(769854..771746) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001458 YP_004045382.1 CDS Riean_0712 NC_014738.1 771754 772074 R COGs: COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); InterPro IPR001133; KEGG: fba:FIC_01670 NADH-ubiquinone oxidoreductase chain K; PFAM: NADH-ubiquinone oxidoreductase chain 4L; SPTR: NADH-ubiquinone oxidoreductase chain K; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; NADH dehydrogenase subunit k complement(771754..772074) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001459 YP_004045383.1 CDS Riean_0713 NC_014738.1 772087 772584 R COGs: COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); InterPro IPR001457; KEGG: fba:FIC_01669 NADH-ubiquinone oxidoreductase chain J; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; SPTR: NADH dehydrogenase I chain J; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; NADH dehydrogenase subunit j complement(772087..772584) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001460 YP_004045384.1 CDS Riean_0714 NC_014738.1 772588 773115 R COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); InterPro IPR010226: IPR017900: IPR017896; KEGG: fba:FIC_01668 NADH-ubiquinone oxidoreductase chain I; SPTR: NADH-quinone oxidoreductase subunit I; TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I; NADH dehydrogenase subunit i complement(772588..773115) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001461 YP_004045385.1 CDS Riean_0715 NC_014738.1 773189 774253 R COGs: COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); InterPro IPR018086: IPR001694; KEGG: fba:FIC_01667 NADH-ubiquinone oxidoreductase chain H; PFAM: respiratory-chain NADH dehydrogenase subunit 1; SPTR: NADH dehydrogenase I, H subunit; PFAM: NADH dehydrogenase; NADH dehydrogenase subunit h complement(773189..774253) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001462 YP_004045386.1 CDS Riean_0716 NC_014738.1 774257 775276 R COGs: COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); InterPro IPR001041: IPR019574; KEGG: fba:FIC_01666 NADH-ubiquinone oxidoreductase chain G; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; SPTR: NADH dehydrogenase I chain G; PFAM: 2Fe-2S iron-sulfur cluster binding domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; NADH dehydrogenase subunit g complement(774257..775276) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001463 YP_004045387.1 CDS Riean_0717 NC_014738.1 775328 776143 R KEGG: fps:FP0500 hypothetical protein; SPTR: Probable outermembrane protein; manually curated; hypothetical protein complement(775328..776143) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001464 YP_004045388.1 CDS Riean_0718 NC_014738.1 776145 777506 R COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterPro IPR001949: IPR011537: IPR011538: IPR019554: IPR 019575; KEGG: fba:FIC_01665 NADH-ubiquinone oxidoreductase chain F; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH dehydrogenase (Quinone); TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain; TIGRFAM: NADH-quinone oxidoreductase, F subunit; NADH dehydrogenase subunit f complement(776145..777506) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001465 YP_004045389.1 CDS Riean_0719 NC_014738.1 777519 778031 R COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023; KEGG: fba:FIC_01664 NADH-ubiquinone oxidoreductase chain E; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; SPTR: NADH-ubiquinone oxidoreductase chain E; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; NADH dehydrogenase subunit e complement(777519..778031) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001466 YP_004045390.1 CDS Riean_0720 NC_014738.1 778090 779313 R COGs: COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; InterPro IPR014029: IPR001135; KEGG: fba:FIC_01663 NADH-ubiquinone oxidoreductase chain D; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH dehydrogenase I chain D; PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; NADH dehydrogenase subunit d complement(778090..779313) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001467 YP_004045391.1 CDS Riean_0721 NC_014738.1 779349 779843 R COGs: COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; InterPro IPR020396: IPR001268; KEGG: fba:FIC_01662 NADH-ubiquinone oxidoreductase chain C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; SPTR: NADH-quinone oxidoreductase; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; NADH dehydrogenase subunit c complement(779349..779843) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001468 YP_004045392.1 CDS Riean_0722 NC_014738.1 779926 780480 R COGs: COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase; InterPro IPR006138: IPR006137; KEGG: fba:FIC_01661 NADH dehydrogenase subunit B; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH dehydrogenase I, B subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; NADH dehydrogenase subunit b complement(779926..780480) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001469 YP_004045393.1 CDS Riean_0723 NC_014738.1 780524 780889 R COGs: COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); InterPro IPR000440; KEGG: fba:FIC_01660 NADH ubiquinone oxidoreductase chain A; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; SPTR: NADH-quinone oxidoreductase subunit; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH dehydrogenase subunit A complement(780524..780889) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001470 YP_004045394.1 CDS Riean_0724 NC_014738.1 781013 781192 R KEGG: fba:FIC_01659 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(781013..781192) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001471 YP_004045395.1 CDS Riean_0725 NC_014738.1 781203 782327 R KEGG: fba:FIC_01658 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(781203..782327) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001472 YP_004045396.1 CDS Riean_0726 NC_014738.1 782409 783092 D COGs: COG2738 Zn-dependent protease; InterPro IPR017441: IPR007395; KEGG: fba:FIC_01657 hypothetical protein; PFAM: peptidase membrane zinc metallopeptidase; SPTR: Membrane zinc metallopeptidase; PFAM: Putative neutral zinc metallopeptidase; peptidase membrane zinc metallopeptidase 782409..783092 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001473 YP_004045397.1 CDS Riean_0727 NC_014738.1 783298 784398 D COGs: COG0763 Lipid A disaccharide synthetase; InterPro IPR003835; KEGG: fba:FIC_01978 lipiD-A-disaccharide synthase; PFAM: glycosyl transferase family 19; PRIAM: LipiD-A-disaccharide synthase; SPTR: Possible lipiD-A-disaccharide synthase; TIGRFAM: lipiD-A-disaccharide synthase; PFAM: LipiD-A-disaccharide synthetase; TIGRFAM: lipiD-A-disaccharide synthase; lipiD-a-disaccharide synthase 783298..784398 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001474 YP_004045398.1 CDS Riean_0728 NC_014738.1 784395 785336 R COGs: COG1090 nucleoside-diphosphate sugar epimerase; InterPro IPR010099: IPR001509: IPR013549; KEGG: cpi:Cpin_7047 domain of unknown function DUF1731; PFAM: domain of unknown function DUF1731; NAD-dependent epimerase/dehydratase; SPTR: Putative uncharacterized protein; PFAM: NAD dependent epimerase/dehydratase family; Domain of unknown function (DUF1731); TIGRFAM: conserved hypothetical protein TIGR01777; hypothetical protein complement(784395..785336) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001475 YP_004045399.1 CDS Riean_0729 NC_014738.1 785373 787523 R COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469; KEGG: fba:FIC_01798 dipeptidyl peptidase IV; PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; SPTR: Dipeptidyl peptidase IV; PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region; peptidase s9b dipeptidylpeptidase iv domain-containing protein complement(785373..787523) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001476 YP_004045400.1 CDS Riean_0730 NC_014738.1 787642 788424 R COGs: COG1512 Beta-propeller domains of methanol dehydrogenase type; InterPro IPR007621; KEGG: fba:FIC_02178 hypothetical protein; PFAM: protein of unknown function DUF477; SPTR: Methanol dehydrogenase beta-propeller domain protein; PFAM: Domain of unknown function (DUF477); hypothetical protein complement(787642..788424) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001477 YP_004045401.1 CDS Riean_0731 NC_014738.1 788405 788836 R COGs: COG3762 membrane protein; InterPro IPR007621; KEGG: fba:FIC_02179 hypothetical protein; PFAM: protein of unknown function DUF477; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF477); hypothetical protein complement(788405..788836) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001478 YP_004045402.1 CDS Riean_0732 NC_014738.1 788836 789441 R COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: fba:FIC_02180 LemA protein; PFAM: LemA family protein; SPTR: Membrane protein LemA; PFAM: LemA family; lema family protein complement(788836..789441) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001479 YP_004045403.1 CDS Riean_0733 NC_014738.1 789522 790013 D COGs: COG0262 Dihydrofolate reductase; InterPro IPR012259: IPR001796; KEGG: fba:FIC_02181 dihydrofolate reductase; PFAM: dihydrofolate reductase region; PRIAM: Dihydrofolate reductase; SPTR: Possible dihydrofolate reductase type I involved in trimethoprim resistance; PFAM: Dihydrofolate reductase; dihydrofolate reductase 789522..790013 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001480 YP_004045404.1 CDS Riean_0734 NC_014738.1 790024 791328 R COGs: COG0621 2-methylthioadenine synthetase; InterPro IPR006638: IPR005840: IPR020612: IPR005839: IPR 013848: IPR007197: IPR002792; KEGG: fba:FIC_01927 possible 2-methylthioadenine synthetase; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Possible 2-methylthioadenine synthetase; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme YliG, TIGR01125; RNA modification enzyme, MiaB family; 30S ribosomal protein s12p methylthiotransferase complement(790024..791328) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001481 YP_004045405.1 CDS Riean_0735 NC_014738.1 791433 792290 R COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005907: IPR005835; KEGG: fba:FIC_01928 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; SPTR: Glucose-1-phosphate thymidylyltransferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form; glucose-1-phosphate thymidylyltransferase complement(791433..792290) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001482 YP_004045406.1 CDS Riean_0736 NC_014738.1 792295 793377 R COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR005888: IPR001509; KEGG: fba:FIC_01929 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase; dtdp-glucose 4,6-dehydratase complement(792295..793377) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001483 YP_004045407.1 CDS Riean_0737 NC_014738.1 793388 793933 R COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: fba:FIC_01930 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; dtdp-4-dehydrorhamnose 3,5-epimerase complement(793388..793933) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001484 YP_004045408.1 CDS Riean_0738 NC_014738.1 793966 794550 R COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: nis:NIS_1249 undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; SPTR: Sugar transferase; PFAM: Bacterial sugar transferase; sugar transferase complement(793966..794550) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001485 YP_004045409.1 CDS Riean_0739 NC_014738.1 794706 795839 R COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: coc:Coch_0714 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: ArnB family DegT/DnrJ/EryC1/StrS family aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; degt/dnrj/eryc1/strs aminotransferase complement(794706..795839) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001486 YP_004045410.1 CDS Riean_0740 NC_014738.1 795879 796622 R COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347: IPR020904: IPR002198; KEGG: slo:Shew_1326 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; short-chain dehydrogenase/reductase sdr complement(795879..796622) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001487 YP_004045411.1 CDS Riean_0741 NC_014738.1 796630 796860 R InterPro IPR009081; KEGG: bfr:BF0825 acyl carrier protein; SPTR: Acyl carrier protein; acyl carrier protein complement(796630..796860) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001488 YP_004045412.1 CDS Riean_0742 NC_014738.1 796869 798455 R COGs: COG3882 protein involved in methoxymalonyl-ACP biosynthesis; InterPro IPR010037: IPR010033; KEGG: bfr:BF0824 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: FkbH like protein; HAD-superfamily phosphatase, subfamily IIIC; PFAM: NLI interacting factor-like phosphatase; TIGRFAM: FkbH-like domain; HAD-superfamily phosphatase, subfamily IIIC; fkbh like protein complement(796869..798455) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001489 YP_004045413.1 CDS Riean_0743 NC_014738.1 798458 798853 R KEGG: cac:CA_C2192 lactoylglutathione lyase; SPTR: Methylmalonyl-CoA epimerase; lactoylglutathione lyase complement(798458..798853) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001490 YP_004045414.1 CDS Riean_0744 NC_014738.1 798868 799920 R COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR013751: IPR013747; KEGG: bfr:BF0822 3-oxoacyl-[acyl-carrier-protein] synthase; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase III; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; beta-ketoacyl-acyl-carrier-protein synthase iii complement(798868..799920) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001491 YP_004045415.1 CDS Riean_0745 NC_014738.1 799923 800156 R KEGG: pdi:BDI_0565 acyl carrier protein; SPTR: Putative acyl carrier protein; acyl carrier protein complement(799923..800156) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001492 YP_004045416.1 CDS Riean_0746 NC_014738.1 800168 800809 R KEGG: bfr:BF0818 serine O-acetyltransferase; SPTR: Pilin glycosylation protein; TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; serine o-acetyltransferase complement(800168..800809) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001493 YP_004045417.1 CDS Riean_0747 NC_014738.1 800812 801417 R COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: coc:Coch_0716 sugar transferase; PFAM: sugar transferase; SPTR: Putative UDP-galactose phosphate transferase; PFAM: Bacterial sugar transferase; sugar transferase complement(800812..801417) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001494 YP_004045418.1 CDS Riean_0748 NC_014738.1 801410 802567 R COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: cat:CA2559_13003 capsular polysaccharide biosynthesis glycosyl transferase; PFAM: glycosyl transferase group 1; SPTR: Capsular polysaccharide biosynthesis glycosyl transferase; PFAM: Glycosyl transferases group 1; group 1 glycosyl transferase complement(801410..802567) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001495 YP_004045419.1 CDS Riean_0749 NC_014738.1 802575 804464 R COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR006426: IPR000583: IPR001962: IPR017932; KEGG: gfo:GFO_1998 asparagine synthetase [glutamine-hydrolyzing]; PFAM: asparagine synthase; glutamine amidotransferase class-II; PRIAM: Asparagine synthase (glutamine-hydrolyzing); SPTR: Asparagine synthase (Glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); asparagine synthase complement(802575..804464) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001496 YP_004045420.1 CDS Riean_0750 NC_014738.1 804522 805568 R KEGG: gfo:GFO_2000 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(804522..805568) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001497 YP_004045421.1 CDS Riean_0751 NC_014738.1 805569 806615 R InterPro IPR001296; KEGG: rme:Rmet_2728 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1; group 1 glycosyl transferase complement(805569..806615) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001498 YP_004045422.1 CDS Riean_0752 NC_014738.1 806627 807499 R COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: str:Sterm_2405 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2; family 2 glycosyl transferase complement(806627..807499) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001499 YP_004045423.1 CDS Riean_0753 NC_014738.1 807496 808632 R KEGG: bpy:Bphyt_4711 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(807496..808632) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001500 YP_004045424.1 CDS Riean_0754 NC_014738.1 808661 809761 R KEGG: bfr:BF1440 capsular polysaccharide polymerase; SPTR: Putative capsular polysaccharide polymerase; hypothetical protein complement(808661..809761) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001501 YP_004045425.1 CDS Riean_0755 NC_014738.1 809848 810810 R InterPro IPR001173; KEGG: pfl:PFL_5100 O antigen biosynthesis abequosyltransferase RfbV, putative; PFAM: glycosyl transferase family 2; SPTR: O antigen biosynthesis abequosyltransferase rfbV, putative; PFAM: Glycosyl transferase family 2; family 2 glycosyl transferase complement(809848..810810) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001502 YP_004045426.1 CDS Riean_0756 NC_014738.1 810785 812143 R KEGG: coc:Coch_0703 polysaccharide biosynthesis protein; SPTR: Putative uncharacterized protein; polysaccharide biosynthesis protein complement(810785..812143) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001503 YP_004045427.1 CDS Riean_0757 NC_014738.1 812161 813444 R COGs: COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; InterPro IPR017476: IPR001732: IPR014026: IPR014027; KEGG: fba:FIC_00330 UDP-glucose dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; SPTR: UDP-N-acetyl-D-galactosamine dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase; nucleotide sugar dehydrogenase complement(812161..813444) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001504 YP_004045428.1 CDS Riean_0758 NC_014738.1 813461 814435 R COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: fba:FIC_00329 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: Possible UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family; naD-dependent epimerase/dehydratase complement(813461..814435) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001505 YP_004045429.1 CDS Riean_0759 NC_014738.1 814447 816819 R COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR005702: IPR003856; KEGG: fba:FIC_01945 tyrosine-protein kinase wzc; PFAM: lipopolysaccharide biosynthesis protein; PRIAM: Non-specific protein-tyrosine kinase; SPTR: Tyrosine-protein kinase Ptk; TIGRFAM: capsular exopolysaccharide family; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family; capsular exopolysaccharide family protein complement(814447..816819) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001506 YP_004045430.1 CDS Riean_0760 NC_014738.1 816852 817658 R COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715: IPR019554; KEGG: fba:FIC_01946 polysaccharide export outer membrane protein; PFAM: polysaccharide export protein; Soluble ligand binding domain; SPTR: Polysaccharide export protein; PFAM: Polysaccharide biosynthesis/export protein; SLBB domain; polysaccharide export protein complement(816852..817658) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001507 YP_004045431.1 CDS Riean_0761 NC_014738.1 817699 819624 R COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869; KEGG: fba:FIC_01947 capsular polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein CapD; SPTR: Putative UDP-GlcNAc-4,6-dehydratase; PFAM: Polysaccharide biosynthesis protein; polysaccharide biosynthesis protein capd complement(817699..819624) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001508 YP_004045432.1 CDS Riean_0762 NC_014738.1 819714 820208 R COGs: COG2137 conserved hypothetical protein; InterPro IPR003783; KEGG: fba:FIC_00324 regulatory protein RecX; PFAM: regulatory protein RecX; SPTR: Regulatory protein RecX; PFAM: RecX family; regulatory protein recx complement(819714..820208) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001509 YP_004045433.1 CDS Riean_0763 NC_014738.1 820275 821543 R COGs: COG0112 Glycine/serine hydroxymethyltransferase; InterPro IPR019798: IPR001085; KEGG: fba:FIC_00321 serine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase; PRIAM: Glycine hydroxymethyltransferase; SPTR: Serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase; glycine hydroxymethyltransferase complement(820275..821543) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001510 YP_004045434.1 CDS Riean_0764 NC_014738.1 821724 823361 D COGs: COG0166 Glucose-6-phosphate isomerase; InterPro IPR001672: IPR018189; KEGG: fba:FIC_00127 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI); PRIAM: Glucose-6-phosphate isomerase; SPTR: Glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase; glucose-6-phosphate isomerase 821724..823361 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001511 YP_004045435.1 CDS Riean_0765 NC_014738.1 823401 824285 D COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; InterPro IPR000672: IPR020867: IPR020630: IPR020631; KEGG: fba:FIC_00126 methylenetetrahydrofolate dehydrogenase (NADP+); PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; PRIAM: Methenyltetrahydrofolate cyclohydrolase; SPTR: Bifunctional protein folD; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; 5,10-methylenetetrahydrofolate dehydrogenase (nadp+); methenyltetrahydrofolate cyclohydrolase 823401..824285 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001512 YP_004045436.1 CDS Riean_0766 NC_014738.1 824290 824862 D COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: fjo:Fjoh_3955 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; transcriptional regulator, crp/fnr family 824290..824862 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001513 YP_004045437.1 CDS Riean_0767 NC_014738.1 824998 825846 D COGs: COG0693 Putative intracellular protease/amidase; InterPro IPR017283: IPR002818; KEGG: bur:Bcep18194_B3049 chaperone protein HchA; PFAM: ThiJ/PfpI domain-containing protein; SPTR: Hydrolase; PFAM: DJ-1/PfpI family; thij/pfpi domain-containing protein 824998..825846 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001514 YP_004045438.1 CDS Riean_0768 NC_014738.1 825922 826722 R COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002347: IPR002198; KEGG: fba:FIC_02048 oxidoreductase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short chain dehydrogenase; PFAM: short chain dehydrogenase; short-chain dehydrogenase/reductase sdr complement(825922..826722) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001515 YP_004045439.1 CDS Riean_0769 NC_014738.1 826727 827959 R COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase; InterPro IPR001986: IPR016228; KEGG: fba:FIC_02047 5-enolpyruvylshikimate-3-phosphate synthase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); PRIAM: 3-phosphoshikimate 1-carboxyvinyltransferase; SPTR: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; 3-phosphoshikimate 1-carboxyvinyltransferase complement(826727..827959) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001516 YP_004045440.1 CDS Riean_0770 NC_014738.1 827961 828293 R InterPro IPR012359: IPR004518; KEGG: fba:FIC_02046 hypothetical protein; PFAM: MazG nucleotide pyrophosphohydrolase; SPTR: Pyrophosphatase; PFAM: MazG nucleotide pyrophosphohydrolase domain; mazg nucleotide pyrophosphohydrolase complement(827961..828293) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001517 YP_004045441.1 CDS Riean_0771 NC_014738.1 828306 829697 R KEGG: fba:FIC_02045 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(828306..829697) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001518 YP_004045442.1 CDS Riean_0772 NC_014738.1 829866 830120 D COGs: COG0254 Ribosomal protein L31; InterPro IPR002150; KEGG: fba:FIC_02044 LSU ribosomal protein L31p; PFAM: ribosomal protein L31; SPTR: 50S ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31; 50S ribosomal protein l31p 829866..830120 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001519 YP_004045443.1 CDS Riean_0773 NC_014738.1 830212 831372 D KEGG: fba:FIC_02043 glucose-1-phosphate thymidylyltransferase; SPTR: Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 830212..831372 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001520 YP_004045444.1 CDS Riean_0774 NC_014738.1 831509 832855 D COGs: COG0621 2-methylthioadenine synthetase; InterPro IPR006638: IPR020612: IPR005839: IPR006467: IPR 013848: IPR007197; KEGG: fba:FIC_01624 MiaB family protein, possibly involved in tRNA or rRNA modification; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: 2-methylthioadenine synthetase; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family; miab-like tRNA modifying enzyme 831509..832855 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001521 YP_004045445.1 CDS Riean_0775 NC_014738.1 832910 834673 R COGs: COG0018 Arginyl-tRNA synthetase; InterPro IPR015945: IPR001278: IPR001412: IPR005148: IPR 008909; KEGG: fba:FIC_00246 arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain protein; Arginyl-tRNA synthetase, class Ic, core; arginyl tRNA synthetase domain protein; PRIAM: Arginine--tRNA ligase; SPTR: Arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase; arginyl-tRNA synthetase complement(832910..834673) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001522 YP_004045446.1 CDS Riean_0776 NC_014738.1 834760 836247 R KEGG: fjo:Fjoh_0404 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(834760..836247) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001523 YP_004045447.1 CDS Riean_0777 NC_014738.1 836270 839263 R COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910: IPR000531; KEGG: fjo:Fjoh_0403 TonB-dependent receptor, plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Probable outer membrane protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; tonb-dependent receptor plug complement(836270..839263) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001524 YP_004045448.1 CDS Riean_0778 NC_014738.1 839396 839980 D COGs: COG0164 Ribonuclease HII; InterPro IPR001352; KEGG: fba:FIC_00249 ribonuclease HII; PFAM: ribonuclease HII/HIII; PRIAM: Ribonuclease H; SPTR: Ribonuclease; PFAM: Ribonuclease HII; ribonuclease h 839396..839980 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001525 YP_004045449.1 CDS Riean_0779 NC_014738.1 840084 841874 R COGs: COG0706 Preprotein translocase subunit YidC; InterPro IPR001708: IPR019998: IPR020001; KEGG: fba:FIC_00250 OxaI/YidC membrane insertion protein; PFAM: 60 kDa inner membrane insertion protein; SPTR: OxaI/YidC membrane insertion protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family; membrane protein insertase, YidC/Oxa1 family domain containing; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; membrane protein insertase, YidC/Oxa1 family, N-terminal domain; protein translocase subunit yidc complement(840084..841874) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001526 YP_004045450.1 CDS Riean_0780 NC_014738.1 841958 843574 R COGs: COG0504 CTP synthase (UTP-ammonia lyase); InterPro IPR004468: IPR017456: IPR000991: IPR017926; KEGG: fba:FIC_00251 CTP synthetase; PFAM: CTP synthase-like; glutamine amidotransferase class-I; PRIAM: CTP synthase; SPTR: CTP synthase; TIGRFAM: CTP synthase; PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase; CTP synthase complement(841958..843574) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001527 YP_004045451.1 CDS Riean_0781 NC_014738.1 843719 844750 R COGs: COG0468 RecA/RadA recombinase; InterPro IPR001553: IPR003593: IPR013765: IPR020584: IPR 020588: IPR020587; KEGG: fba:FIC_00240 RecA protein; PFAM: RecA domain protein; SMART: AAA ATPase; SPTR: Protein recA; TIGRFAM: recA protein; PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA; reca protein complement(843719..844750) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001528 YP_004045452.1 CDS Riean_0782 NC_014738.1 844847 845929 R COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; InterPro IPR001126: IPR017963; KEGG: fba:FIC_02189 DNA polymerase IV; PFAM: UMUC domain protein DNA-repair protein; PRIAM: DNA-directed DNA polymerase; SPTR: DNA-directed DNA polymerase; manually curated; PFAM: impB/mucB/samB family C-terminal; IMS family HHH motif; impB/mucB/samB family; DNA-directed DNA polymerase complement(844847..845929) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001529 YP_004045453.1 CDS Riean_0783 NC_014738.1 846015 846785 R COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterPro IPR006058: IPR017896; KEGG: fba:FIC_01974 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; SPTR: Succinate dehydrogenase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; succinate dehydrogenase/fumarate reductase iron-sulfur subunit complement(846015..846785) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001530 YP_004045454.1 CDS Riean_0784 NC_014738.1 846809 848821 R COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR011280: IPR003953: IPR004112; KEGG: fba:FIC_01975 succinate dehydrogenase flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; PRIAM: Succinate dehydrogenase; SPTR: Succinate dehydrogenase; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup; succinate dehydrogenase or fumarate reductase, flavoprotein subunit complement(846809..848821) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001531 YP_004045455.1 CDS Riean_0785 NC_014738.1 848886 849554 R InterPro IPR011138; KEGG: fba:FIC_01976 succinate dehydrogenase cytochrome b subunit; SPTR: Succinate dehydrogenase, cytochrome b558 subunit; TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family complement(848886..849554) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001532 YP_004045456.1 CDS Riean_0786 NC_014738.1 849679 851487 R COGs: COG0658 membrane metal-binding protein; InterPro IPR004477; KEGG: fba:FIC_01977 competence protein; PFAM: ComEC/Rec2-related protein; SPTR: Competence protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein; ComEC/rec2-like protein complement(849679..851487) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001533 YP_004045457.1 CDS Riean_0787 NC_014738.1 851537 851974 R KEGG: pfs:PFLU5108 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(851537..851974) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001534 YP_004045458.1 CDS Riean_0788 NC_014738.1 851974 853602 R COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022: IPR011762: IPR011763; KEGG: fba:FIC_00433 methylcrotonyl-CoA carboxylase carboxyl transferase subunit; PFAM: carboxyl transferase; PRIAM: Methylcrotonoyl-CoA carboxylase; SPTR: Methylcrotonoyl-CoA carboxylase; PFAM: Carboxyl transferase domain; methylcrotonoyl-CoA carboxylase complement(851974..853602) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001535 YP_004045459.1 CDS Riean_0789 NC_014738.1 853707 854894 R InterPro IPR005135; KEGG: fba:FIC_02378 hypothetical protein; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/Exonuclease/phosphatase family protein; PFAM: Endonuclease/Exonuclease/phosphatase family; endonuclease/exonuclease/phosphatase complement(853707..854894) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001536 YP_004045460.1 CDS Riean_0790 NC_014738.1 855172 857979 D KEGG: fba:FIC_02377 hypothetical protein; SPTR: TonB-dependent outer membrane receptor; hypothetical protein 855172..857979 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001537 YP_004045461.1 CDS Riean_0791 NC_014738.1 858005 859408 D KEGG: fps:FP2239 lipoprotein; SPTR: Putative uncharacterized protein; lipoprotein 858005..859408 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001538 YP_004045462.1 CDS Riean_0792 NC_014738.1 859506 859685 D KEGG: pbe:PB105828.00.0 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 859506..859685 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001539 YP_004045463.1 CDS Riean_0793 NC_014738.1 860765 861103 R COGs: COG3512 conserved hypothetical protein; InterPro IPR021127: IPR019199; KEGG: bfs:BF3950 hypothetical protein; PFAM: Virulence-associated protein D / CRISPR associated protein Cas2; SPTR: Putative uncharacterized protein; TIGRFAM: CRISPR-associated protein Cas2; PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2; CRISPR-associated protein, cas2 family complement(860765..861103) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001540 YP_004045464.1 CDS Riean_0794 NC_014738.1 861093 861992 R COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR019855: IPR002729; KEGG: fps:FP1525 CRISPR-associated Cas1 family protein; PFAM: protein of unknown function DUF48; SPTR: Putative uncharacterized protein; TIGRFAM: CRISPR-associated protein Cas1; PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated endonuclease Cas1, NMENI subtype; CRISPR-associated endonuclease Cas1; CRISPR-associated protein, cas1 family complement(861093..861992) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001541 YP_004045465.1 CDS Riean_0796 NC_014738.1 866459 867394 D COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; InterPro IPR004136; KEGG: fba:FIC_00456 2-nitropropane dioxygenase, NPD; PFAM: 2-nitropropane dioxygenase NPD; SPTR: Enoyl-[acyl-carrier-protein] reductase (NADH); PFAM: 2-nitropropane dioxygenase; TIGRFAM: enoyl-(acyl-carrier-protein) reductase II; 2-nitropropane dioxygenase npd 866459..867394 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001543 YP_004045466.1 CDS Riean_0797 NC_014738.1 867440 867769 R KEGG: fps:FP2399 ferredoxin; SPTR: 2Fe-2S ferredoxin (Andrenodoxin-like); PFAM: 2Fe-2S iron-sulfur cluster binding domain; ferredoxin complement(867440..867769) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001544 YP_004045467.1 CDS Riean_0798 NC_014738.1 867775 868827 R COGs: COG0492 Thioredoxin reductase; InterPro IPR000103: IPR013027; KEGG: fba:FIC_01562 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Thioredoxin-disulfide reductase, NADP-thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; faD-dependent pyridine nucleotide-disulfide oxidoreductase complement(867775..868827) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001545 YP_004045468.1 CDS Riean_0799 NC_014738.1 868965 869732 D KEGG: fba:FIC_01563 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3108); ATP-dependent exonuclease v subunit alpha 868965..869732 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001546 YP_004045469.1 CDS Riean_0800 NC_014738.1 869762 870262 D InterPro IPR018914; KEGG: fba:FIC_01979 hypothetical protein; PFAM: Protein of unknown function DUF2480; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2480); hypothetical protein 869762..870262 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001547 YP_004045470.1 CDS Riean_0801 NC_014738.1 870310 870975 D InterPro IPR007317; KEGG: fba:FIC_01981 hypothetical protein; PFAM: Uncharacterised protein family UPF0363; SPTR: Putative uncharacterized protein; PFAM: Bacterial protein of unknown function (DUF937); hypothetical protein 870310..870975 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001548 YP_004045471.1 CDS Riean_0802 NC_014738.1 871127 872101 D COGs: COG1899 Deoxyhypusine synthase; InterPro IPR002773; KEGG: fba:FIC_00242 deoxyhypusine synthase; PFAM: deoxyhypusine synthase; SPTR: Deoxyhypusine synthase; PFAM: Deoxyhypusine synthase; TIGRFAM: deoxyhypusine synthase; homospermidine synthase 871127..872101 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001549 YP_004045472.1 CDS Riean_0803 NC_014738.1 872206 872733 D KEGG: fba:FIC_02369 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 872206..872733 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001550 YP_004045473.1 CDS Riean_0804 NC_014738.1 872717 873151 D KEGG: fba:FIC_02368 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 872717..873151 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001551 YP_004045474.1 CDS Riean_0805 NC_014738.1 873214 873450 R COGs: COG0694 Thioredoxin-like protein and domains; InterPro IPR001075; KEGG: fba:FIC_02255 nitrogen-fixing NifU, C-terminal; PFAM: nitrogen-fixing NifU domain protein; SPTR: NifU family protein; PFAM: NifU-like domain; nitrogen-fixing nifu domain-containing protein complement(873214..873450) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001552 YP_004045475.1 CDS Riean_0806 NC_014738.1 873484 874587 R COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR000808: IPR019591; KEGG: fba:FIC_02256 septum site-determining protein MinD; PFAM: ATPase-like, ParA/MinD; SPTR: Chromosome partitioning ATPase; PFAM: ParA/MinD ATPase like; Anion-transporting ATPase; ATPase-like, para/mind complement(873484..874587) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001553 YP_004045476.1 CDS Riean_0807 NC_014738.1 874645 875895 R COGs: COG1301 Na+/H+-dicarboxylate symporter; InterPro IPR001991; KEGG: fjo:Fjoh_4575 sodium:dicarboxylate symporter; PFAM: sodium:dicarboxylate symporter; SPTR: DAACS family dicarboxylate/amino acid:cation symporter; PFAM: Sodium:dicarboxylate symporter family; sodium:dicarboxylate symporter complement(874645..875895) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001554 YP_004045477.1 CDS Riean_0808 NC_014738.1 876011 876427 R InterPro IPR013247: IPR001452; KEGG: fba:FIC_02258 hypothetical protein; PFAM: SH3 type 3 domain protein; SPTR: Possible peptidoglycan-binding LysM; PFAM: Bacterial SH3 domain; sh3 type 3 domain-containing protein complement(876011..876427) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001555 YP_004045478.1 CDS Riean_0809 NC_014738.1 876438 876917 R InterPro IPR007055; KEGG: fba:FIC_02259 hypothetical protein; PFAM: transport-associated; SPTR: Transport-associated protein; PFAM: Putative phospholipiD-binding domain; transport-associated protein complement(876438..876917) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001556 YP_004045479.1 CDS Riean_0810 NC_014738.1 877078 877845 D COGs: COG3757 Lyzozyme M1 (1 4-beta-N-acetylmuramidase); InterPro IPR018077: IPR002053; KEGG: fba:FIC_01834 glycoside hydrolase, family 25; PFAM: glycoside hydrolase family 25; SMART: Glycoside hydrolase, family 25 subgroup; SPTR: Family 25 glycoside hydrolase; PFAM: Glycosyl hydrolases family 25; glycoside hydrolase 877078..877845 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001557 YP_004045480.1 CDS Riean_0811 NC_014738.1 877926 880115 R COGs: COG4772 Outer membrane receptor for Fe3+-dicitrate; InterPro IPR012910: IPR000531; KEGG: rbi:RB2501_11352 TonB-dependent outer membrane protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB dependent/liganD-gated channel; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; tonb-dependent receptor complement(877926..880115) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001558 YP_004045481.1 CDS Riean_0812 NC_014738.1 880337 881761 R InterPro IPR000866: IPR017936; KEGG: fba:FIC_01973 hypothetical protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Putative uncharacterized protein; PFAM: AhpC/TSA family; alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen complement(880337..881761) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001559 YP_004045482.1 CDS Riean_0813 NC_014738.1 881926 882786 D InterPro IPR019115; KEGG: fba:FIC_00050 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; hypothetical protein 881926..882786 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001560 YP_004045483.1 CDS Riean_0814 NC_014738.1 882828 883292 R KEGG: fba:FIC_00152 hypothetical protein; SPTR: Cytochrome c; hypothetical protein complement(882828..883292) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001561 YP_004045484.1 CDS Riean_0815 NC_014738.1 883304 884944 R KEGG: fba:FIC_00153 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(883304..884944) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001562 YP_004045485.1 CDS Riean_0816 NC_014738.1 884991 886340 R COGs: COG1066 ATP-dependent serine protease; InterPro IPR004504: IPR003593; KEGG: fba:FIC_00254 DNA repair protein RadA; SMART: AAA ATPase; SPTR: DNA repair protein radA; TIGRFAM: DNA repair protein RadA; PFAM: KaiC; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: DNA repair protein RadA; DNA repair protein rada complement(884991..886340) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001563 YP_004045486.1 CDS Riean_0817 NC_014738.1 886434 887198 D COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: fba:FIC_01987 methylglutaconyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: Enoyl-CoA hydratase/isomerase; PFAM: Enoyl-CoA hydratase/isomerase family; enoyl-CoA hydratase/isomerase 886434..887198 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001564 YP_004045487.1 CDS Riean_0819 NC_014738.1 895019 895909 R COGs: COG1801 conserved hypothetical protein; InterPro IPR002763; KEGG: chu:CHU_1402 hypothetical protein; PFAM: protein of unknown function DUF72; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function DUF72; hypothetical protein complement(895019..895909) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001571 YP_004045488.1 CDS Riean_0820 NC_014738.1 895940 897022 R COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: fjo:Fjoh_1219 beta-lactamase; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase; beta-lactamase complement(895940..897022) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001572 YP_004045489.1 CDS Riean_0821 NC_014738.1 897133 898788 R InterPro IPR000788: IPR013350; KEGG: fba:FIC_01815 ribonucleotide-diphosphate reductase subunit alpha; PFAM: ribonucleotide reductase large subunit; PRIAM: Ribonucleoside-diphosphate reductase; SPTR: Ribonucleoside-diphosphate reductase; TIGRFAM: ribonucleoside-diphosphate reductase, alpha chain; PFAM: Ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, alpha chain; ribonucleoside-diphosphate reductase subunit alpha complement(897133..898788) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001573 YP_004045490.1 CDS Riean_0822 NC_014738.1 898836 899810 R COGs: COG0208 Ribonucleotide reductase beta subunit; InterPro IPR000358; KEGG: fba:FIC_01816 ribonucleotide reductase of class Ia (aerobic), beta subunit; PFAM: ribonucleotide reductase; SPTR: Ribonucleotide reductase of class Ia (Aerobic), beta subunit; PFAM: Ribonucleotide reductase, small chain; ribonucleotide reductase complement(898836..899810) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001574 YP_004045491.1 CDS Riean_0823 NC_014738.1 900120 900773 R COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: fba:FIC_00666 competence protein; PFAM: phosphoribosyltransferase; SPTR: Competence protein; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein; phosphoribosyltransferase complement(900120..900773) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001575 YP_004045492.1 CDS Riean_0824 NC_014738.1 900995 901546 R KEGG: fba:FIC_01821 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(900995..901546) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001577 YP_004045493.1 CDS Riean_0825 NC_014738.1 901601 902251 R COGs: COG1418 HD superfamily hydrolase; InterPro IPR003607: IPR006674; KEGG: fba:FIC_01822 HD domain protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: Hydrolase; PFAM: HD domain; metal dependent phosphohydrolase complement(901601..902251) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001578 YP_004045494.1 CDS Riean_0826 NC_014738.1 902383 903840 R COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006095: IPR014362: IPR006097: IPR006096; KEGG: fba:FIC_00024 glutamate dehydrogenase; PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; PRIAM: Glutamate dehydrogenase (NADP(+)); SPTR: Glutamate dehydrogenase; PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; glutamate dehydrogenase (nad) complement(902383..903840) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001579 YP_004045495.1 CDS Riean_0827 NC_014738.1 903925 905028 R COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: fba:FIC_00025 smf protein DNA processing chain A; PFAM: SMF family protein; SPTR: Smf protein DNA processing chain A; TIGRFAM: DNA protecting protein DprA; PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA; DNA protecting protein dpra complement(903925..905028) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001580 YP_004045496.1 CDS Riean_0828 NC_014738.1 905031 905408 R KEGG: fba:FIC_00021 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Bacterial-like globin; hypothetical protein complement(905031..905408) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001581 YP_004045497.1 CDS Riean_0829 NC_014738.1 905419 905973 R COGs: COG0817 Holliday junction resolvasome endonuclease subunit; InterPro IPR002176: IPR020563; KEGG: fba:FIC_00384 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC; PRIAM: Crossover junction endodeoxyribonuclease; SPTR: Crossover junction endodeoxyribonuclease ruvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease ruvc complement(905419..905973) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001582 YP_004045498.1 CDS Riean_0830 NC_014738.1 905997 907187 R KEGG: phe:Phep_3796 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(905997..907187) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001583 YP_004045499.1 CDS Riean_0831 NC_014738.1 907217 907690 R COGs: COG1522 Transcriptional regulators; InterPro IPR000485: IPR019888: IPR019887; KEGG: coc:Coch_1628 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; SPTR: Proline dehydrogenase transcriptional activator; PFAM: AsnC family; ArsR family transcriptional regulator complement(907217..907690) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001584 YP_004045500.1 CDS Riean_0832 NC_014738.1 908038 910968 D InterPro IPR012910: IPR000531; KEGG: cpi:Cpin_1552 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; tonb-dependent receptor plug 908038..910968 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001585 YP_004045501.1 CDS Riean_0833 NC_014738.1 910983 912419 D KEGG: cpi:Cpin_6565 RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family; ragb/susd domain-containing protein 910983..912419 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001586 YP_004045502.1 CDS Riean_0834 NC_014738.1 912586 913170 D COGs: COG0632 Holliday junction resolvasome DNA-binding subunit; InterPro IPR000085: IPR013849: IPR011114; KEGG: fba:FIC_00395 Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; SPTR: Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA, C-terminal domain; RuvA N terminal domain; TIGRFAM: Holliday junction DNA helicase, RuvA subunit; holliday junction DNA helicase subunit ruva 912586..913170 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001587 YP_004045503.1 CDS Riean_0835 NC_014738.1 913176 920198 D KEGG: fba:FIC_00396 hypothetical protein; SPTR: Putative uncharacterized protein; gliding motility protein spra 913176..920198 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001588 YP_004045504.1 CDS Riean_0836 NC_014738.1 920304 920747 D COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: fba:FIC_00671 queuosine biosynthesis QueD, PTPS-I; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; SPTR: Queuosine biosynthesis QueD, PTPS-I; PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; 6-pyruvoyl tetrahydropterin synthase/QueD family protein; 6-pyruvoyl-tetrahydropterin synthase 920304..920747 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001589 YP_004045505.1 CDS Riean_0837 NC_014738.1 920775 921542 D COGs: COG2908 conserved hypothetical protein; InterPro IPR004843; KEGG: fba:FIC_00672 UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; SPTR: UDP-2,3-diacylglucosamine hydrolase; PFAM: Calcineurin-like phosphoesterase; metallophosphoesterase 920775..921542 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001590 YP_004045506.1 CDS Riean_0838 NC_014738.1 921539 922381 D COGs: COG4757 alpha/beta hydrolase; InterPro IPR017208: IPR000073; KEGG: fba:FIC_02270 hypothetical protein; PFAM: alpha/beta hydrolase fold; SPTR: Possible alpha/beta hydrolase; alpha/beta fold family hydrolase 921539..922381 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001591 YP_004045507.1 CDS Riean_0839 NC_014738.1 922437 924551 R COGs: COG1505 Serine protease of the peptidase family S9A; InterPro IPR002470: IPR002471: IPR004106; KEGG: fba:FIC_02481 prolyl endopeptidase precursor; PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller; PRIAM: Prolyl oligopeptidase; SPTR: Prolyl endopeptidase; PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase family; prolyl oligopeptidase complement(922437..924551) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001592 YP_004045508.1 CDS Riean_0840 NC_014738.1 924562 925011 R COGs: COG1225 Peroxiredoxin; InterPro IPR000866: IPR017936; KEGG: fba:FIC_00033 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: AhpC/TSA family; alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen complement(924562..925011) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001593 YP_004045509.1 CDS Riean_0841 NC_014738.1 925044 925670 D COGs: COG0177 EndoIII-related endonuclease; InterPro IPR003265: IPR004036: IPR005759; KEGG: fba:FIC_00034 endonuclease III; PFAM: HhH-GPD family protein; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD family protein; SPTR: Possible DNA-(Apurinic or apyrimidinic site) lyase; TIGRFAM: endonuclease III; PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: endonuclease III; endonuclease iii 925044..925670 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001594 YP_004045510.1 CDS Riean_0842 NC_014738.1 925766 926734 R COGs: COG0264 Translation elongation factor Ts; InterPro IPR001816: IPR018101: IPR000449: IPR014039; KEGG: fjo:Fjoh_1609 translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associateD- domain-containing protein; SPTR: Elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts; translation elongation factor ts (ef-ts) complement(925766..926734) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001595 YP_004045511.1 CDS Riean_0843 NC_014738.1 926867 927451 D KEGG: fba:FIC_02160 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 926867..927451 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001596 YP_004045512.1 CDS Riean_0844 NC_014738.1 927529 928485 R COGs: COG0825 Acetyl-CoA carboxylase alpha subunit; InterPro IPR001095: IPR020582: IPR011763; KEGG: fba:FIC_02144 acetyl-coenzyme A carboxyl transferase alpha chain; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region; SPTR: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; acetyl-CoA carboxylase, carboxyl transferase subunit alpha complement(927529..928485) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001597 YP_004045513.1 CDS Riean_0845 NC_014738.1 928539 930050 R COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR020060: IPR001412: IPR004527: IPR020058; KEGG: fba:FIC_02145 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; PRIAM: Glutamate--tRNA ligase; SPTR: Glutamate--tRNA ligase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family; glutamyl-tRNA synthetase complement(928539..930050) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001598 YP_004045514.1 CDS Riean_0846 NC_014738.1 930210 931736 D InterPro IPR004993; KEGG: fba:FIC_02458 auxin-regulated protein; PFAM: GH3 auxin-responsive promoter; SPTR: GH3 auxin-responsive promoter family protein; PFAM: GH3 auxin-responsive promoter; gh3 auxin-responsive promoter 930210..931736 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001599 YP_004045515.1 CDS Riean_0847 NC_014738.1 931818 934409 R COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterPro IPR001270: IPR003593: IPR018368: IPR017730: IPR 004176: IPR003959: IPR013093: IPR019489: IPR001313; KEGG: fba:FIC_02283 ClpB protein; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: Chaperone ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB; ATP-dependent chaperone clpb complement(931818..934409) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001600 YP_004045516.1 CDS Riean_0848 NC_014738.1 934680 935243 D COGs: COG0193 Peptidyl-tRNA hydrolase; InterPro IPR001328: IPR018171; KEGG: fba:FIC_02344 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; PRIAM: Aminoacyl-tRNA hydrolase; SPTR: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 934680..935243 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001601 YP_004045517.1 CDS Riean_0849 NC_014738.1 935253 936377 R KEGG: bvu:BVU_1234 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(935253..936377) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001602 YP_004045518.1 CDS Riean_0850 NC_014738.1 936362 937270 R InterPro IPR000326; KEGG: bth:BT_3074 hypothetical protein; PFAM: phosphoesterase PA-phosphatase related; SPTR: PAP2 family protein; PFAM: PAP2 superfamily; phosphoesterase pa-phosphatase-like protein complement(936362..937270) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001603 YP_004045519.1 CDS Riean_0851 NC_014738.1 937435 941481 D KEGG: fba:FIC_00184 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 937435..941481 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001604 YP_004045520.1 CDS Riean_0852 NC_014738.1 941492 942559 D COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: rlg:Rleg_4908 acyltransferase 3; PFAM: acyltransferase 3; SPTR: Putative uncharacterized protein; PFAM: Acyltransferase family; acyltransferase 3 941492..942559 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001605 YP_004045521.1 CDS Riean_0853 NC_014738.1 942685 944289 R COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR011547; KEGG: fba:FIC_02342 sulphate transporter; PFAM: sulphate transporter; SPTR: Integral membrane sulfate transporter; PFAM: Sulfate transporter family; sulfate transporter complement(942685..944289) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001606 YP_004045522.1 CDS Riean_0854 NC_014738.1 944431 944727 R KEGG: fba:FIC_02341 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(944431..944727) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001607 YP_004045523.1 CDS Riean_0855 NC_014738.1 944739 945422 R COGs: COG0288 Carbonic anhydrase; InterPro IPR015892: IPR001765; KEGG: fba:FIC_02340 carbonic anhydrase; PFAM: carbonic anhydrase; PRIAM: Carbonate dehydratase; SPTR: Carbonic anhydrase; PFAM: Carbonic anhydrase; carbonate dehydratase complement(944739..945422) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001608 YP_004045524.1 CDS Riean_0856 NC_014738.1 945556 946113 R COGs: COG1045 Serine acetyltransferase; InterPro IPR018357: IPR001451; KEGG: fba:FIC_02339 Hexapeptide transferase family protein; PFAM: transferase hexapeptide repeat containing protein; SPTR: Possible colanic acid O-acetyltransferase II; PFAM: Bacterial transferase hexapeptide (three repeats); transferase hexapeptide repeat containing protein complement(945556..946113) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001609 YP_004045525.1 CDS Riean_0857 NC_014738.1 946325 947473 R COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: fba:FIC_02338 glycosyl transferase, group 1 family protein; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1 family protein; PFAM: Glycosyl transferases group 1; group 1 glycosyl transferase complement(946325..947473) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001610 YP_004045526.1 CDS Riean_0858 NC_014738.1 947476 948309 R KEGG: bpo:BP951000_2049 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(947476..948309) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001611 YP_004045527.1 CDS Riean_0859 NC_014738.1 948506 949927 R COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: fps:FP1411 sugar O-acetyltransferase precursor; PFAM: membrane bound O-acyl transferase MBOAT family protein; SPTR: Alginate O-acetylation protein; PFAM: MBOAT family; membrane bound o-acyl transferase mboat family protein complement(948506..949927) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001612 YP_004045528.1 CDS Riean_0860 NC_014738.1 949932 950852 R COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: apb:SAR116_1957 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2; family 2 glycosyl transferase complement(949932..950852) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001613 YP_004045529.1 CDS Riean_0861 NC_014738.1 950865 952031 R COGs: COG0438 Glycosyltransferase; InterPro IPR006061: IPR001296; KEGG: fba:FIC_02337 glycosyl transferase, group 1 family protein; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1 family protein; PFAM: Glycosyl transferases group 1; group 1 glycosyl transferase complement(950865..952031) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001614 YP_004045530.1 CDS Riean_0863 NC_014738.1 953251 954588 D COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR002195: IPR004722: IPR006680; KEGG: fba:FIC_00226 dihydroorotase; PFAM: amidohydrolase; SPTR: Dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type; dihydroorotase 953251..954588 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001616 YP_004045531.1 CDS Riean_0864 NC_014738.1 954626 957550 D COGs: COG0612 Zn-dependent peptidase; InterPro IPR001431: IPR011765: IPR007863; KEGG: fba:FIC_00227 peptidase, M16 family; PFAM: peptidase M16 domain protein; SPTR: Peptidase, M16 family; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16); peptidase m16 domain-containing protein 954626..957550 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001617 YP_004045532.1 CDS Riean_0865 NC_014738.1 957658 958536 D COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347: IPR002198; KEGG: fba:FIC_00231 2,4-dienoyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: 2,4-dienoyl-CoA reductase (NADPH); PFAM: short chain dehydrogenase; short-chain dehydrogenase/reductase sdr 957658..958536 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001618 YP_004045533.1 CDS Riean_0866 NC_014738.1 958576 960318 D COGs: COG0608 Single-stranded DNA-specific exonuclease; InterPro IPR004610: IPR001667: IPR003156; KEGG: fba:FIC_02060 single-strandeD-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: Single-stranded DNA-specific exonuclease; TIGRFAM: single-strandeD-DNA-specific exonuclease RecJ; PFAM: DHHA1 domain; DHH family; TIGRFAM: single-strandeD-DNA-specific exonuclease RecJ; exonuclease recj 958576..960318 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001619 YP_004045534.1 CDS Riean_0867 NC_014738.1 960328 960912 D COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase; InterPro IPR005248: IPR004821: IPR004820; KEGG: fba:FIC_02247 nicotinate-nucleotide adenylyltransferase; PFAM: cytidylyltransferase; PRIAM: Nicotinate-nucleotide adenylyltransferase; SPTR: Probable nicotinate-nucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase 960328..960912 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001620 YP_004045535.1 CDS Riean_0868 NC_014738.1 960935 961276 D KEGG: fba:FIC_02246 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 960935..961276 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001621 YP_004045536.1 CDS Riean_0869 NC_014738.1 961519 961773 R InterPro IPR002583; KEGG: fba:FIC_02234 SSU ribosomal protein S20p; PFAM: ribosomal protein S20; SPTR: 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20; 30S ribosomal protein s20p complement(961519..961773) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001623 YP_004045537.1 CDS Riean_0870 NC_014738.1 961982 963274 R COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: fba:FIC_02236 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; SPTR: N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase; cell wall hydrolase/autolysin complement(961982..963274) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001625 YP_004045538.1 CDS Riean_0871 NC_014738.1 963296 965905 D COGs: COG1452 Organic solvent tolerance protein OstA; KEGG: fba:FIC_02237 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 963296..965905 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001626 YP_004045539.1 CDS Riean_0872 NC_014738.1 965994 966374 D COGs: COG0251 Putative translation initiation inhibitor yjgF family; InterPro IPR006056: IPR006175; KEGG: fba:FIC_02238 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, putative; endoribonuclease l-psp 965994..966374 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001627 YP_004045540.1 CDS Riean_0873 NC_014738.1 966375 966818 D KEGG: fba:FIC_02239 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 966375..966818 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001628 YP_004045541.1 CDS Riean_0874 NC_014738.1 966926 968218 D COGs: COG0148 Enolase; InterPro IPR000941: IPR020809: IPR020811: IPR020810; KEGG: fba:FIC_01992 phosphopyruvate hydratase; PFAM: Enolase-like; PRIAM: Phosphopyruvate hydratase; SPTR: Enolase; TIGRFAM: enolase; PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase; enolase 966926..968218 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001629 YP_004045542.1 CDS Riean_0875 NC_014738.1 968322 969608 D COGs: COG0372 Citrate synthase; InterPro IPR002020: IPR019810: IPR010953; KEGG: fba:FIC_01991 citrate synthase (si); PFAM: Citrate synthase; PRIAM: Citrate (Si)-synthase; SPTR: Citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; TIGRFAM: citrate synthase I (hexameric type); citrate synthase i 968322..969608 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001630 YP_004045543.1 CDS Riean_0876 NC_014738.1 969784 970911 D InterPro IPR000866: IPR017936; KEGG: pgn:PGN_0488 hypothetical protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: DNA topoisomerase IV subunit B; PFAM: AhpC/TSA family; alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen 969784..970911 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001631 YP_004045544.1 CDS Riean_0877 NC_014738.1 970955 971869 D COGs: COG1834 N-Dimethylarginine dimethylaminohydrolase; InterPro IPR003198; KEGG: fba:FIC_02241 NG,NG-dimethylarginine dimethylaminohydrolase 1; PFAM: amidinotransferase; SPTR: N-dimethylarginine dimethylaminohydrolase; PFAM: Amidinotransferase; amidinotransferase 970955..971869 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001632 YP_004045545.1 CDS Riean_0878 NC_014738.1 971965 972459 R COGs: COG0203 Ribosomal protein L17; InterPro IPR000456; KEGG: fba:FIC_01994 LSU ribosomal protein L17p; PFAM: ribosomal protein L17; SPTR: 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17; 50S ribosomal protein l17p complement(971965..972459) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001633 YP_004045546.1 CDS Riean_0879 NC_014738.1 972468 973463 R COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit; InterPro IPR011263: IPR011773: IPR011261: IPR011262: IPR 011260; KEGG: fba:FIC_01995 DNA-directed RNA polymerase alpha subunit; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase alpha subunit domain protein; SMART: RNA polymerase RpoA/D/Rpb3-type; SPTR: DNA-directed RNA polymerase; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type; DNA-directed RNA polymerase subunit alpha complement(972468..973463) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001634 YP_004045547.1 CDS Riean_0880 NC_014738.1 973492 974100 R COGs: COG0522 Ribosomal protein S4 and related protein; InterPro IPR002942: IPR005709: IPR001912; KEGG: fba:FIC_01996 30S ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: 30S ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type; 30S ribosomal protein S4 complement(973492..974100) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001635 YP_004045548.1 CDS Riean_0881 NC_014738.1 974120 974509 R COGs: COG0100 Ribosomal protein S11; InterPro IPR018102: IPR001971: IPR019981; KEGG: fba:FIC_01997 SSU ribosomal protein S11p (S14e); PFAM: ribosomal protein S11; SPTR: 30S ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; PFAM: Ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; 30S ribosomal protein S11 complement(974120..974509) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001636 YP_004045549.1 CDS Riean_0882 NC_014738.1 974521 974898 R COGs: COG0099 Ribosomal protein S13; InterPro IPR018269: IPR001892: IPR019980; KEGG: fba:FIC_01998 SSU ribosomal protein S13p (S18e); PFAM: ribosomal protein S13; SPTR: 30S ribosomal protein S13; TIGRFAM: 30S ribosomal protein S13; PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13; 30S ribosomal protein S13 complement(974521..974898) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001637 YP_004045550.1 CDS Riean_0883 NC_014738.1 974916 975032 R InterPro IPR000473; KEGG: cat:CA2559_05830 ribosomal protein L36; PFAM: ribosomal protein L36; SPTR: 50S ribosomal protein L36; TIGRFAM: ribosomal protein L36; manually curated; PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type; 50S ribosomal protein l36p complement(974916..975032) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001638 YP_004045551.1 CDS Riean_0884 NC_014738.1 975077 975292 R COGs: COG0361 Translation initiation factor 1 (IF-1); InterPro IPR004368: IPR006196; KEGG: fba:FIC_02000 translation initiation factor 1; PFAM: S1 IF1 family protein; SPTR: Initiation factor IF1; TIGRFAM: translation initiation factor IF-1; PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1; translation initiation factor 1 (bif-1) complement(975077..975292) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001639 YP_004045552.1 CDS Riean_0885 NC_014738.1 975305 976684 R COGs: COG0201 Preprotein translocase subunit SecY; InterPro IPR002208; KEGG: fba:FIC_02001 preprotein translocase SecY subunit; PFAM: SecY protein; SPTR: Preprotein translocase subunit secY; TIGRFAM: preprotein translocase, SecY subunit; PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit; protein translocase subunit SecY complement(975305..976684) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001640 YP_004045553.1 CDS Riean_0886 NC_014738.1 976693 977142 R COGs: COG0200 Ribosomal protein L15; InterPro IPR001196: IPR005749; KEGG: fba:FIC_02002 LSU ribosomal protein L15p (L27Ae); SPTR: 50S ribosomal protein L15; TIGRFAM: ribosomal protein L15; PFAM: Ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle; 50S ribosomal protein L15 complement(976693..977142) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001641 YP_004045554.1 CDS Riean_0887 NC_014738.1 977223 977399 R InterPro IPR018038: IPR005996: IPR000517; KEGG: fba:FIC_02003 LSU ribosomal protein L30p (L7e); PFAM: ribosomal protein L30; SPTR: 50S ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle; 50S ribosomal protein l30p complement(977223..977399) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001642 YP_004045555.1 CDS Riean_0888 NC_014738.1 977410 977931 R COGs: COG0098 Ribosomal protein S5; InterPro IPR018192: IPR005712: IPR013810: IPR005324; KEGG: fba:FIC_02004 30S ribosomal protein S5; PFAM: Ribosomal protein S5; ribosomal protein S5 domain protein; SPTR: Ribosomal protein S5; TIGRFAM: ribosomal protein S5; PFAM: Ribosomal protein S5, N-terminal domain; Ribosomal protein S5, C-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type; 30S ribosomal protein S5 complement(977410..977931) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001643 YP_004045556.1 CDS Riean_0889 NC_014738.1 977945 978298 R COGs: COG0256 Ribosomal protein L18; InterPro IPR004389: IPR005484; KEGG: fba:FIC_02005 LSU ribosomal protein L18p (L5e); PFAM: ribosomal protein L18P/L5E; SPTR: 50S ribosomal protein L18; TIGRFAM: ribosomal protein L18; PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type; 50S ribosomal protein L18 complement(977945..978298) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001644 YP_004045557.1 CDS Riean_0890 NC_014738.1 978310 978855 R COGs: COG0097 Ribosomal protein L6P/L9E; InterPro IPR019906: IPR002358: IPR000702: IPR020040; KEGG: fba:FIC_02006 LSU ribosomal protein L6p (L9e); PFAM: Ribosomal protein L6, alpha-beta domain; SPTR: 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: Ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type; 50S ribosomal protein L6 complement(978310..978855) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001645 YP_004045558.1 CDS Riean_0891 NC_014738.1 978873 979271 R COGs: COG0096 Ribosomal protein S8; InterPro IPR000630; KEGG: fba:FIC_02007 SSU ribosomal protein S8p (S15Ae); PFAM: ribosomal protein S8; SPTR: Ribosomal protein S8; PFAM: Ribosomal protein S8; 30S ribosomal protein S8 complement(978873..979271) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001646 YP_004045559.1 CDS Riean_0892 NC_014738.1 979392 979661 R COGs: COG0199 Ribosomal protein S14; InterPro IPR018271: IPR001209; KEGG: fba:FIC_02008 SSU ribosomal protein S14p (S29e); PFAM: ribosomal protein S14; SPTR: Ribosomal protein S14; PFAM: Ribosomal protein S14p/S29e; 30S ribosomal protein s14p complement(979392..979661) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001647 YP_004045560.1 CDS Riean_0893 NC_014738.1 979667 980218 R COGs: COG0094 Ribosomal protein L5; InterPro IPR002132; KEGG: fba:FIC_02009 50S ribosomal protein L5; SPTR: 50S ribosomal protein L5; PFAM: ribosomal L5P family C-terminus; Ribosomal protein L5; 50S ribosomal protein L5 complement(979667..980218) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001648 YP_004045561.1 CDS Riean_0894 NC_014738.1 980228 980548 R COGs: COG0198 Ribosomal protein L24; InterPro IPR005824: IPR003256; KEGG: fba:FIC_02010 LSU ribosomal protein L24p (L26e); SMART: KOW domain protein; SPTR: 50S ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle; 50S ribosomal protein l24p complement(980228..980548) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001649 YP_004045562.1 CDS Riean_0895 NC_014738.1 980568 980936 R COGs: COG0093 Ribosomal protein L14; InterPro IPR019972: IPR005745: IPR000218; KEGG: fba:FIC_02011 50S ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; SPTR: 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle; 50S ribosomal protein L14 complement(980568..980936) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001650 YP_004045563.1 CDS Riean_0896 NC_014738.1 980936 981190 R COGs: COG0186 Ribosomal protein S17; InterPro IPR000266: IPR019979: IPR019984; KEGG: fba:FIC_02012 SSU ribosomal protein S17p (S11e); PFAM: ribosomal protein S17; SPTR: 30S ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: Ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; 30S ribosomal protein S17 complement(980936..981190) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001651 YP_004045564.1 CDS Riean_0897 NC_014738.1 981206 981391 R InterPro IPR018254: IPR001854; KEGG: fba:FIC_02013 ribosomal protein L29; PFAM: ribosomal protein L29; SPTR: 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; 50S ribosomal protein l29p complement(981206..981391) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001652 YP_004045565.1 CDS Riean_0898 NC_014738.1 981403 981828 R COGs: COG0197 Ribosomal protein L16/L10E; InterPro IPR000114: IPR020798: IPR016180; KEGG: fba:FIC_02014 LSU ribosomal protein L16p (L10e); PFAM: Ribosomal protein L10e/L16; SPTR: 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle; 50S ribosomal protein L16 complement(981403..981828) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001653 YP_004045566.1 CDS Riean_0899 NC_014738.1 981939 982634 R COGs: COG0092 Ribosomal protein S3; InterPro IPR004087: IPR018280: IPR005704: IPR008282: IPR 004044: IPR001351: IPR004088; KEGG: fba:FIC_02015 30S ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; Ribosomal protein S3 domain; KH type 2 domain protein; SMART: KH domain protein; SPTR: Ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: KH domain; Ribosomal protein S3, C-terminal domain; Ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type; 30S ribosomal protein S3 complement(981939..982634) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001654 YP_004045567.1 CDS Riean_0900 NC_014738.1 982642 983046 R COGs: COG0091 Ribosomal protein L22; InterPro IPR005727: IPR001063; KEGG: fba:FIC_02016 LSU ribosomal protein L22p (L17e); PFAM: ribosomal protein L22/L17; SPTR: 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type; 50S ribosomal protein L22 complement(982642..983046) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001655 YP_004045568.1 CDS Riean_0901 NC_014738.1 983052 983330 R COGs: COG0185 Ribosomal protein S19; InterPro IPR002222: IPR020934: IPR005732; KEGG: fba:FIC_02017 30S ribosomal protein S19; PFAM: ribosomal protein S19/S15; SPTR: 30S ribosomal protein S19; TIGRFAM: ribosomal protein S19; PFAM: Ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle; 30S ribosomal protein s19p complement(983052..983330) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001656 YP_004045569.1 CDS Riean_0902 NC_014738.1 983333 984154 R COGs: COG0090 Ribosomal protein L2; InterPro IPR002171: IPR005880; KEGG: fba:FIC_02018 50S ribosomal protein L2; PFAM: ribosomal protein L2; SPTR: 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: Ribosomal Proteins L2, RNA binding domain; Ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar; 50S ribosomal protein l2p complement(983333..984154) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001657 YP_004045570.1 CDS Riean_0903 NC_014738.1 984174 984464 R COGs: COG0089 Ribosomal protein L23; InterPro IPR013025; KEGG: fba:FIC_02019 LSU ribosomal protein L23p (L23Ae); PFAM: Ribosomal protein L25/L23; SPTR: LSU ribosomal protein L23p (L23Ae); PFAM: Ribosomal protein L23; 50S ribosomal protein l23p complement(984174..984464) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001658 YP_004045571.1 CDS Riean_0904 NC_014738.1 984468 985097 R COGs: COG0088 Ribosomal protein L4; InterPro IPR002136; KEGG: fba:FIC_02020 LSU ribosomal protein L4p (L1e); PFAM: ribosomal protein L4/L1e; SPTR: 50S ribosomal protein L4; PFAM: Ribosomal protein L4/L1 family; 50S ribosomal protein l4p complement(984468..985097) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001659 YP_004045572.1 CDS Riean_0905 NC_014738.1 985088 985711 R COGs: COG0087 Ribosomal protein L3; InterPro IPR019926: IPR019927: IPR000597; KEGG: fba:FIC_02021 LSU ribosomal protein L3p (L3e); PFAM: ribosomal protein L3; SPTR: 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial; 50S ribosomal protein L3 complement(985088..985711) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001660 YP_004045573.1 CDS Riean_0906 NC_014738.1 986014 986766 D COGs: COG5495 conserved hypothetical protein; InterPro IPR018931; KEGG: fba:FIC_02543 NADP oxidoreductase coenzyme F420-dependent superfamily protein; PFAM: Domain of unknown function DUF2520; SPTR: NADP oxidoreductase coenzyme f420-dependent superfamily protein; PFAM: Domain of unknown function (DUF2520); NADP oxidoreductase coenzyme F420-dependent; hypothetical protein 986014..986766 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001661 YP_004045574.1 CDS Riean_0907 NC_014738.1 986756 987274 D COGs: COG1778 Low specificity phosphatase (HAD superfamily); InterPro IPR010023: IPR006549: IPR013200; KEGG: fba:FIC_02544 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; SPTR: 3-deoxy-manno-octulosonate-8-phosphatase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; HAD-superfamily hydrolase, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, yrbi family 986756..987274 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001662 YP_004045575.1 CDS Riean_0908 NC_014738.1 987292 987870 D COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; InterPro IPR003697; KEGG: fba:FIC_02545 septum formation protein Maf; PFAM: Maf family protein; SPTR: Maf-like protein FIC_02545; TIGRFAM: maf protein; PFAM: Maf-like protein; TIGRFAM: MAF protein; maf protein 987292..987870 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001663 YP_004045576.1 CDS Riean_0909 NC_014738.1 987935 990400 D InterPro IPR019734: IPR013026; KEGG: fba:FIC_00009 TPR domain protein; SPTR: TPR domain protein; gliding motility protein spre 987935..990400 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001664 YP_004045577.1 CDS Riean_0910 NC_014738.1 990406 991080 R COGs: COG1214 Inactive homolog of metal-dependent protease molecular chaperone; InterPro IPR000905; KEGG: fba:FIC_00008 glycoprotease family exported protein; PFAM: peptidase M22 glycoprotease; SPTR: Possible M22 family non-peptidase; PFAM: Glycoprotease family; TIGRFAM: universal bacterial protein YeaZ; peptidase m22 glycoprotease complement(990406..991080) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001665 YP_004045578.1 CDS Riean_0911 NC_014738.1 991188 992345 R KEGG: coc:Coch_1607 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(991188..992345) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001666 YP_004045579.1 CDS Riean_0912 NC_014738.1 992357 993064 R COGs: COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; InterPro IPR003593: IPR012202: IPR004392: IPR003495; KEGG: sli:Slin_3881 hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; SMART: AAA ATPase; SPTR: Putative uncharacterized protein; TIGRFAM: hydrogenase accessory protein HypB; PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: hydrogenase accessory protein HypB; hydrogenase accessory protein hypb complement(992357..993064) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001667 YP_004045580.1 CDS Riean_0913 NC_014738.1 993074 993412 R COGs: COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); InterPro IPR000688; KEGG: sli:Slin_3882 hydrogenase expression/synthesis HypA; PFAM: hydrogenase expression/synthesis HypA; SPTR: Putative uncharacterized protein; PFAM: Hydrogenase expression/synthesis hypA family; hydrogenase expression/synthesis hypa complement(993074..993412) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001668 YP_004045581.1 CDS Riean_0914 NC_014738.1 993405 994412 R COGs: COG0829 Urease accessory protein UreH; InterPro IPR002669; KEGG: cth:Cthe_1812 urease accessory protein UreD; PFAM: Urease accessory protein UreD; SPTR: Urease accessory protein ureD; PFAM: UreD urease accessory protein; urease accessory protein ured complement(993405..994412) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001669 YP_004045582.1 CDS Riean_0915 NC_014738.1 994449 995060 R COGs: COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; InterPro IPR004400: IPR012202: IPR003495; KEGG: cth:Cthe_1813 urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; SPTR: Urease accessory protein ureG; TIGRFAM: urease accessory protein UreG; PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: urease accessory protein UreG; hydrogenase accessory protein HypB; urease accessory protein ureg complement(994449..995060) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001670 YP_004045583.1 CDS Riean_0916 NC_014738.1 995079 995765 R COGs: COG0830 Urease accessory protein UreF; InterPro IPR002639; KEGG: cpi:Cpin_1476 urease accessory protein UreF; PFAM: Urease accessory protein UreF; SPTR: Urease accessory protein ureF; PFAM: UreF; urease accessory protein uref complement(995079..995765) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001671 YP_004045584.1 CDS Riean_0917 NC_014738.1 995769 996272 R COGs: COG2371 Urease accessory protein UreE; InterPro IPR012406: IPR004029: IPR007864; KEGG: cpi:Cpin_1475 urease accessory protein UreE; PFAM: UreE urease accessory domain-containing protein; SPTR: Urease accessory protein ureE; PFAM: UreE urease accessory protein, C-terminal domain; UreE urease accessory protein, N-terminal domain; uree urease accessory domain-containing protein complement(995769..996272) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001672 YP_004045585.1 CDS Riean_0918 NC_014738.1 996291 998180 R COGs: COG0804 Urea amidohydrolase (urease) alpha subunit; InterPro IPR017952: IPR005848: IPR018486: IPR017950: IPR 006311: IPR011612: IPR006680: IPR017951; KEGG: fjo:Fjoh_4835 urease subunit alpha; PFAM: amidohydrolase; Urease alpha-subunit domain-containing protein; PRIAM: Urease; SPTR: Urease; TIGRFAM: urease, alpha subunit; PFAM: Urease alpha-subunit, N-terminal domain; Amidohydrolase family; TIGRFAM: urease, alpha subunit; urease subunit alpha complement(996291..998180) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001673 YP_004045586.1 CDS Riean_0919 NC_014738.1 998213 998602 R COGs: COG0832 Urea amidohydrolase (urease) beta subunit; InterPro IPR002019; KEGG: tal:Thal_0721 urease, beta subunit; PFAM: Urease beta subunit; PRIAM: Urease; SPTR: Urease subunit beta; TIGRFAM: urease, beta subunit; PFAM: Urease beta subunit; TIGRFAM: urease, beta subunit; urease subunit beta complement(998213..998602) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001674 YP_004045587.1 CDS Riean_0920 NC_014738.1 998602 998907 R COGs: COG0831 Urea amidohydrolase (urease) gamma subunit; InterPro IPR012010: IPR002026; KEGG: fjo:Fjoh_4837 urease subunit gamma; PFAM: Urease gamma subunit region; PRIAM: Urease; SPTR: Urease subunit gamma; TIGRFAM: urease, gamma subunit; PFAM: Urease, gamma subunit; TIGRFAM: urease, gamma subunit; urease subunit gamma complement(998602..998907) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001675 YP_004045588.1 CDS Riean_0921 NC_014738.1 999080 1001425 R COGs: COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid; InterPro IPR010105: IPR012910: IPR000531; KEGG: dfe:Dfer_0102 TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor; tonb-dependent siderophore receptor complement(999080..1001425) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001676 YP_004045589.1 CDS Riean_0922 NC_014738.1 1001459 1002232 R COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR017871: IPR003439: IPR003593; KEGG: acd:AOLE_09215 iron ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC-type cobalamin/Fe3+-siderophore transport system; PFAM: ABC transporter; ABC transporter complement(1001459..1002232) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001677 YP_004045590.1 CDS Riean_0923 NC_014738.1 1002223 1003233 R COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: aci:ACIAD0970 iron ABC transporter membrane protein; PFAM: transport system permease protein; SPTR: Putative iron transport protein (ABC superfamily, membrane); PFAM: FecCD transport family; transport system permease complement(1002223..1003233) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001678 YP_004045591.1 CDS Riean_0924 NC_014738.1 1003235 1004302 R COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: aci:ACIAD0971 iron ABC transporter periplasmic substrate-binding protein; PFAM: periplasmic binding protein; SPTR: Putative iron transport protein (ABC superfamily, peri_bind); PFAM: Periplasmic binding protein; periplasmic binding protein complement(1003235..1004302) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001679 YP_004045592.1 CDS Riean_0925 NC_014738.1 1004312 1004836 R KEGG: fba:FIC_02494 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1004312..1004836) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001680 YP_004045593.1 CDS Riean_0926 NC_014738.1 1004917 1005768 R COGs: COG0777 Acetyl-CoA carboxylase beta subunit; InterPro IPR000438: IPR000022: IPR011762; KEGG: fba:FIC_02495 acetyl-coenzyme A carboxyl transferase beta chain; PFAM: carboxyl transferase; SPTR: Acetyl-CoA carboxylase; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: Carboxyl transferase domain; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; acetyl-CoA carboxylase, carboxyl transferase subunit beta complement(1004917..1005768) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001681 YP_004045594.1 CDS Riean_0927 NC_014738.1 1005884 1006954 R COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR000771: IPR006411; KEGG: fba:FIC_02496 fructose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; SPTR: Fructose-bisphosphate aldolase; TIGRFAM: fructose-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases; fructose-bisphosphate aldolase, class II, yeast/E. coli subtype; fructose-bisphosphate aldolase, class ii complement(1005884..1006954) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001682 YP_004045595.1 CDS Riean_0928 NC_014738.1 1007010 1007876 R COGs: COG0061 sugar kinase; InterPro IPR002504; KEGG: fba:FIC_02498 NAD kinase; PFAM: ATP-NAD/AcoX kinase; SPTR: NAD kinase; PFAM: ATP-NAD kinase; ATP-nad/acox kinase complement(1007010..1007876) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001683 YP_004045596.1 CDS Riean_0929 NC_014738.1 1008050 1010725 D KEGG: fba:FIC_02535 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1008050..1010725 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001684 YP_004045597.1 CDS Riean_0930 NC_014738.1 1010885 1011340 D KEGG: fba:FIC_00038 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1010885..1011340 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001685 YP_004045598.1 CDS Riean_0931 NC_014738.1 1011438 1012118 D COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: fba:FIC_00039 MotA/TolQ/ExbB family biopolymer transport prote in; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB family biopolymer transport prote in; PFAM: MotA/TolQ/ExbB proton channel family; TC 2.C.1.1.1; outer membrane transport energization protein exbb 1011438..1012118 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001686 YP_004045599.1 CDS Riean_0932 NC_014738.1 1012135 1012533 D COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: fba:FIC_00040 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; TC 2.C.1.1.1; outer membrane transport energization protein exbd 1012135..1012533 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001687 YP_004045600.1 CDS Riean_0933 NC_014738.1 1012538 1013398 D KEGG: fba:FIC_00041 ferric siderophore transport system, periplasmic binding protein TonB; SPTR: Ferric siderophore transport system, periplasmic binding protein TonB; TC 2.C.1.1.1; outer membrane transport energization protein tonb 1012538..1013398 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001688 YP_004045601.1 CDS Riean_0934 NC_014738.1 1013442 1014650 D COGs: COG2081 flavoprotein; InterPro IPR013027: IPR004792; KEGG: fba:FIC_02440 hypothetical protein; PFAM: HI0933 family protein; SPTR: Flavoprotein; PFAM: HI0933-like protein; TIGRFAM: flavoprotein, HI0933 family; hi0933 family protein 1013442..1014650 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001689 YP_004045602.1 CDS Riean_0935 NC_014738.1 1014713 1015507 R InterPro IPR002541; KEGG: coc:Coch_1103 cytochrome c assembly protein; PFAM: cytochrome c assembly protein; SPTR: Cytochrome c assembly protein; PFAM: Cytochrome C assembly protein; cytochrome c assembly protein complement(1014713..1015507) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001690 YP_004045603.1 CDS Riean_0936 NC_014738.1 1015510 1016736 R KEGG: coc:Coch_1102 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: ResB-like family; hypothetical protein complement(1015510..1016736) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001691 YP_004045604.1 CDS Riean_0937 NC_014738.1 1016814 1018280 R COGs: COG3303 Formate-dependent nitrite reductase periplasmic cytochrome c552 subunit; InterPro IPR003321: IPR011031; KEGG: coc:Coch_1101 nitrite reductase (cytochrome; ammonia-forming); PFAM: cytochrome c552; PRIAM: Nitrite reductase (cytochrome; ammonia-forming); SPTR: Nitrite reductase (Cytochrome; ammonia-forming); PFAM: Cytochrome c552; respiratory nitrite reductase (cytochrome; ammonia-forming) complement(1016814..1018280) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001692 YP_004045605.1 CDS Riean_0938 NC_014738.1 1018302 1018904 R COGs: COG3005 Nitrate/TMAO reductase membrane-bound tetraheme cytochrome c subunit; InterPro IPR017571: IPR005126: IPR011031; KEGG: coc:Coch_1100 cytochrome c nitrate reductase, small subunit; PFAM: NapC/NirT cytochrome c domain protein; SPTR: Cytochrome c nitrate reductase, small subunit; TIGRFAM: cytochrome c nitrate reductase, small subunit; PFAM: NapC/NirT cytochrome c family, N-terminal region; TIGRFAM: cytochrome c nitrate reductase, small subunit; respiratory nitrite reductase specific menaquinol--cytochrome-c reductase (nrfh) precursor complement(1018302..1018904) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001693 YP_004045606.1 CDS Riean_0939 NC_014738.1 1019135 1020457 D KEGG: coc:Coch_1099 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1019135..1020457 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001694 YP_004045607.1 CDS Riean_0940 NC_014738.1 1020541 1023174 R InterPro IPR000209: IPR003961: IPR007280; KEGG: sli:Slin_5991 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Fibronectin type III domain protein; peptidase S8 and S53 subtilisin kexin sedolisin; peptidase domain protein; SMART: Fibronectin type III domain protein; SPTR: Putative surface protein; PFAM: Bacterial pre-peptidase C-terminal domain; Fibronectin type III domain; Subtilase family; fibronectin type III domain-containing protein complement(1020541..1023174) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001695 YP_004045608.1 CDS Riean_0941 NC_014738.1 1023476 1025140 D COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR017871: IPR001140: IPR003439: IPR003593: IPR 017940; KEGG: fba:FIC_00206 ATPase; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: Possible xenobiotic-transporting ATPase; PFAM: ABC transporter transmembrane region; ABC transporter; ABC transporter 1023476..1025140 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001696 YP_004045609.1 CDS Riean_0942 NC_014738.1 1025343 1025681 D InterPro IPR006628; KEGG: fba:FIC_00205 hypothetical protein; SMART: PUR-alpha/beta/gamma DNA/RNA-binding; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3276); pur-alpha/beta/gamma DNA/RNA-binding protein 1025343..1025681 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001697 YP_004045610.1 CDS Riean_0943 NC_014738.1 1025852 1026571 R COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: fba:FIC_00203 LmbE family protein; PFAM: LmbE family protein; SPTR: LmbE family protein; PFAM: GlcNAc-PI de-N-acetylase; lmbe family protein complement(1025852..1026571) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001699 YP_004045611.1 CDS Riean_0944 NC_014738.1 1026669 1028300 R InterPro IPR001440: IPR019734: IPR013026; KEGG: fba:FIC_00420 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: TPR repeat-containing protein; tetratricopeptide tpr_1 repeat-containing protein complement(1026669..1028300) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001700 YP_004045612.1 CDS Riean_0945 NC_014738.1 1028415 1029284 R KEGG: fba:FIC_00419 phosphate ABC transporter, phosphate-binding component; SPTR: Phosphate ABC transporter, phosphate-binding component; phosphate ABC transporter substrate-binding protein, phot family complement(1028415..1029284) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001701 YP_004045613.1 CDS Riean_0946 NC_014738.1 1029277 1029471 R KEGG: sli:Slin_5091 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1029277..1029471) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001702 YP_004045614.1 CDS Riean_0947 NC_014738.1 1029535 1030380 R KEGG: fba:FIC_00417 TonB family protein; SPTR: TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; TC 2.C.1.1.1; outer membrane transport energization protein tonb complement(1029535..1030380) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001703 YP_004045615.1 CDS Riean_0948 NC_014738.1 1030409 1030957 R InterPro IPR003400; KEGG: fba:FIC_00416 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport ExbD protein; PFAM: Biopolymer transport protein ExbD/TolR; TC 2.C.1.1.1; outer membrane transport energization protein exbd complement(1030409..1030957) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001704 YP_004045616.1 CDS Riean_0949 NC_014738.1 1030967 1031569 R InterPro IPR003400; KEGG: fba:FIC_00415 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Putative uncharacterized protein; PFAM: Biopolymer transport protein ExbD/TolR; TC 2.C.1.1.1; outer membrane transport energization protein exbd complement(1030967..1031569) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001705 YP_004045617.1 CDS Riean_0950 NC_014738.1 1031672 1032538 R COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: fba:FIC_00414 MotA/TolQ/ExbB proton channel family protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel family; TC 2.C.1.1.1; outer membrane transport energization protein exbb complement(1031672..1032538) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001706 YP_004045618.1 CDS Riean_0951 NC_014738.1 1032804 1035638 R COGs: COG0495 Leucyl-tRNA synthetase; InterPro IPR002302: IPR001412: IPR015413: IPR002300: IPR 013155; KEGG: fba:FIC_00413 leucyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodon-binding; SPTR: Leucine--tRNA ligase; TIGRFAM: leucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; tRNA synthetases class I (M); TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family; leucyl-tRNA synthetase complement(1032804..1035638) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001707 YP_004045619.1 CDS Riean_0952 NC_014738.1 1035829 1036581 D COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: fba:FIC_00411 glycosyl transferase, family 2; PFAM: glycosyl transferase family 2; SPTR: Family 2 glycosyltransferase; PFAM: Glycosyl transferase family 2; family 2 glycosyl transferase 1035829..1036581 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001708 YP_004045620.1 CDS Riean_0953 NC_014738.1 1036776 1038305 D COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001940: IPR011782: IPR001254: IPR001478; KEGG: fba:FIC_02240 serine protease, HtrA/DegQ/DegS family; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF domain protein; SPTR: S1C subfamily peptidase Do; TIGRFAM: protease Do; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family; protease do 1036776..1038305 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001709 YP_004045621.1 CDS Riean_0954 NC_014738.1 1038446 1039690 D COGs: COG0826 Collagenase and related protease; InterPro IPR001539; KEGG: coc:Coch_2116 peptidase U32; PFAM: peptidase U32; SPTR: Peptidase U32; PFAM: Peptidase family U32; peptidase u32 1038446..1039690 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001710 YP_004045622.1 CDS Riean_0955 NC_014738.1 1039706 1039936 D InterPro IPR001080: IPR017896; KEGG: coc:Coch_2117 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4fe-4S ferredoxin iron-sulfur binding domain-containing protein 1039706..1039936 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001711 YP_004045623.1 CDS Riean_0956 NC_014738.1 1039940 1040500 D COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: fba:FIC_02041 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase; 5-formyltetrahydrofolate cyclo-ligase 1039940..1040500 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001712 YP_004045624.1 CDS Riean_0957 NC_014738.1 1040464 1041036 R KEGG: aag:AaeL_AAEL004680 nuclear lamin L1 alpha, putative; SPTR: Putative uncharacterized protein; hypothetical protein complement(1040464..1041036) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001713 YP_004045625.1 CDS Riean_0958 NC_014738.1 1041043 1042191 R KEGG: fba:FIC_02040 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1041043..1042191) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001714 YP_004045626.1 CDS Riean_0959 NC_014738.1 1042374 1042664 D KEGG: fba:FIC_02038 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1042374..1042664 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001715 YP_004045627.1 CDS Riean_0960 NC_014738.1 1042808 1044076 R COGs: COG0172 Seryl-tRNA synthetase; InterPro IPR018156: IPR002317: IPR015866: IPR002314: IPR 006195; KEGG: fba:FIC_00139 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; PRIAM: Serine--tRNA ligase; SPTR: Seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: Seryl-tRNA synthetase N-terminal domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: seryl-tRNA synthetase; seryl-tRNA synthetase complement(1042808..1044076) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001716 YP_004045628.1 CDS Riean_0961 NC_014738.1 1044125 1044703 R KEGG: fba:FIC_00138 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1044125..1044703) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001717 YP_004045629.1 CDS Riean_0962 NC_014738.1 1044712 1045986 D COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR012795: IPR012796: IPR011063; KEGG: fba:FIC_00404 tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; SPTR: tRNA(Ile)-lysidine synthetase; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, C-terminal domain; tRNA(Ile)-lysidine synthetase, N-terminal domain; tRNA(ile)-lysidine synthetase 1044712..1045986 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001718 YP_004045630.1 CDS Riean_0963 NC_014738.1 1045996 1048068 D COGs: COG4232 Thiol:disulfide interchange protein; InterPro IPR017936; KEGG: fba:FIC_00403 cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase; PRIAM: Protein-disulfide reductase; SPTR: Thiol:disulfide interchange protein DsbD; PFAM: Disulphide bond corrector protein DsbC; Cytochrome C biogenesis protein transmembrane region; Protein of unknown function, DUF255; protein-disulfide reductase 1045996..1048068 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001719 YP_004045631.1 CDS Riean_0964 NC_014738.1 1048300 1049058 D COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: fba:FIC_02135 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; SPTR: Alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; alpha/beta fold family hydrolase 1048300..1049058 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001720 YP_004045632.1 CDS Riean_0965 NC_014738.1 1049237 1050244 D KEGG: cpi:Cpin_3187 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1049237..1050244 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001721 YP_004045633.1 CDS Riean_0966 NC_014738.1 1050247 1050708 D KEGG: fba:FIC_00986 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1050247..1050708 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001722 YP_004045634.1 CDS Riean_0967 NC_014738.1 1050734 1057705 D InterPro IPR006530; KEGG: zpr:ZPR_3000 protein containing rhs repeat; PFAM: YD repeat-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: YD repeat protein; PFAM: Salmonella virulence plasmid 65kDa B protein; TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies); yd repeat protein 1050734..1057705 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001723 YP_004045635.1 CDS Riean_0968 NC_014738.1 1057777 1058208 D KEGG: pcb:PC000287.00.0 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1057777..1058208 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001724 YP_004045636.1 CDS Riean_0969 NC_014738.1 1058215 1058496 D KEGG: coc:Coch_0160 YD repeat protein; SPTR: YD repeat protein; hypothetical protein 1058215..1058496 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001725 YP_004045637.1 CDS Riean_0970 NC_014738.1 1058490 1059032 D KEGG: chu:CHU_1430 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1058490..1059032 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001726 YP_004045638.1 CDS Riean_0971 NC_014738.1 1059100 1059585 D InterPro IPR000096; KEGG: sdn:Sden_2438 serum amyloid A protein; PFAM: Serum amyloid A protein; SMART: Serum amyloid A protein; SPTR: Serum amyloid A protein; PFAM: Serum amyloid A protein; serum amyloid a protein 1059100..1059585 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001727 YP_004045639.1 CDS Riean_0972 NC_014738.1 1059589 1059948 D KEGG: lba:Lebu_1962 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1059589..1059948 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001728 YP_004045640.1 CDS Riean_0973 NC_014738.1 1059966 1060223 D KEGG: bth:BT_3793 hypothetical protein; SPTR: Stylish 1-2; hypothetical protein 1059966..1060223 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001729 YP_004045641.1 CDS Riean_0974 NC_014738.1 1060312 1060473 D hypothetical protein 1060312..1060473 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001730 YP_004045642.1 CDS Riean_0975 NC_014738.1 1060481 1060807 D KEGG: srm:SRM_01616 transcription elongation factor GreA; SPTR: Transcription elongation factor; hypothetical protein 1060481..1060807 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001731 YP_004045643.1 CDS Riean_0976 NC_014738.1 1060943 1061455 D KEGG: tet:TepyoMp41 ymf62; SPTR: Putative uncharacterized protein; hypothetical protein 1060943..1061455 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001732 YP_004045644.1 CDS Riean_0977 NC_014738.1 1061572 1062855 D COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR016160: IPR015590; KEGG: fba:FIC_02073 succinate-semialdehyde dehydrogenase (NAD); PFAM: Aldehyde Dehydrogenase; SPTR: Succinate-semialdehyde dehydrogenase (NAD); PFAM: Aldehyde dehydrogenase family; aldehyde dehydrogenase 1061572..1062855 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001733 YP_004045645.1 CDS Riean_0978 NC_014738.1 1062934 1064379 R COGs: COG0469 Pyruvate kinase; InterPro IPR015793: IPR001697: IPR015794; KEGG: fba:FIC_02294 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; PRIAM: Pyruvate kinase; SPTR: Pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase; pyruvate kinase complement(1062934..1064379) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001734 YP_004045646.1 CDS Riean_0979 NC_014738.1 1064372 1064842 R KEGG: fba:FIC_02293 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1064372..1064842) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001735 YP_004045647.1 CDS Riean_0980 NC_014738.1 1064829 1065572 R COGs: COG0571 dsRNA-specific ribonuclease; InterPro IPR011907: IPR000999: IPR001159; KEGG: fba:FIC_02292 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; PRIAM: Ribonuclease III; SMART: ribonuclease III; double-stranded RNA binding domain protein; SPTR: Possible ribonuclease III; TIGRFAM: ribonuclease III; PFAM: RNase3 domain; Double-stranded RNA binding motif; TIGRFAM: ribonuclease III, bacterial; rnase iii complement(1064829..1065572) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001736 YP_004045648.1 CDS Riean_0981 NC_014738.1 1065576 1066820 R COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR017568: IPR018201: IPR014030: IPR014031; KEGG: fba:FIC_02291 3-oxoacyl-[acyl-carrier-protein] synthase II; PFAM: Beta-ketoacyl synthase; SPTR: Beta-ketoacyl-acyl-carrier-protein synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II; 3-oxoacyl-(acyl-carrier-protein) synthase ii complement(1065576..1066820) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001737 YP_004045649.1 CDS Riean_0982 NC_014738.1 1066849 1067088 R COGs: COG0236 Acyl carrier protein; InterPro IPR003231: IPR006162: IPR006163: IPR009081; KEGG: fba:FIC_02290 acyl carrier protein; PFAM: phosphopantetheine-binding; SPTR: Acyl carrier protein; TIGRFAM: acyl carrier protein; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein; acyl carrier protein complement(1066849..1067088) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001738 YP_004045650.1 CDS Riean_0983 NC_014738.1 1067244 1067759 R KEGG: phe:Phep_0972 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1067244..1067759) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001739 YP_004045651.1 CDS Riean_0984 NC_014738.1 1067924 1069180 R InterPro IPR002797; KEGG: bfr:BF1439 oligosaccharide repeat-containing polymerase; PFAM: polysaccharide biosynthesis protein; SPTR: Oligosaccharide repeat-containing polymerase; PFAM: Polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(1067924..1069180) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001740 YP_004045652.1 CDS Riean_0985 NC_014738.1 1069222 1069719 D KEGG: hiq:CGSHiGG_01500 7-cyano-7-deazaguanine reductase; SPTR: NADPH-dependent 7-cyano-7-deazaguanine reductase; hypothetical protein 1069222..1069719 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001741 YP_004045653.1 CDS Riean_0986 NC_014738.1 1069688 1070578 D KEGG: edi:EDI_195220 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1069688..1070578 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001742 YP_004045654.1 CDS Riean_0987 NC_014738.1 1070541 1071035 R KEGG: fba:FIC_00135 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1070541..1071035) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001743 YP_004045655.1 CDS Riean_0988 NC_014738.1 1071061 1071846 R COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017; KEGG: fba:FIC_00133 iron-sulphur-binding reductase; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: Fe-S oxidoreductase, dehydrogenase subunit; manually curated; PFAM: Cysteine-rich domain; hypothetical protein complement(1071061..1071846) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001744 YP_004045656.1 CDS Riean_0989 NC_014738.1 1071901 1073238 R COGs: COG0247 Fe-S oxidoreductase; InterPro IPR017900: IPR000215: IPR017896; KEGG: fba:FIC_00132 transmembrane [4Fe-4S] cluster-binding oxidoredu ctase; SPTR: Iron-sulphur-binding oxidoreductase (Ferredoxin); transmembrane (4fe-4S) cluster-binding oxidoreductase complement(1071901..1073238) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001745 YP_004045657.1 CDS Riean_0990 NC_014738.1 1073257 1074195 R COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: fba:FIC_00131 Mce4 protein; PFAM: Mammalian cell entry related domain protein; SPTR: Mce4 protein; PFAM: mce related protein; mammalian cell entry related domain-containing protein complement(1073257..1074195) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001746 YP_004045658.1 CDS Riean_0991 NC_014738.1 1074300 1076426 R InterPro IPR000297; KEGG: fba:FIC_00130 peptidyl-prolyl cis-trans isomerase; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: PPIC-type PPIASE domain; ppic-type peptidyl-prolyl cis-trans isomerase complement(1074300..1076426) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001747 YP_004045659.1 CDS Riean_0992 NC_014738.1 1076574 1076915 D COGs: COG0662 Mannose-6-phosphate isomerase; InterPro IPR001538; KEGG: fba:FIC_02146 mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; SPTR: Mannose-6-phosphate isomerase; PFAM: Mannose-6-phosphate isomerase; mannose-6-phosphate isomerase 1076574..1076915 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001748 YP_004045660.1 CDS Riean_0993 NC_014738.1 1076928 1077866 D InterPro IPR006598; KEGG: bth:BT_3363 lipopolysaccharide core biosynthesis protein LpsA; SMART: lipopolysaccharide-modifying protein; SPTR: Lipopolysaccharide biosynthesis protein; PFAM: Arabidopsis thaliana protein of unknown function (DUF821); lipopolysaccharide-modifying protein 1076928..1077866 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001749 YP_004045661.1 CDS Riean_0994 NC_014738.1 1077867 1078901 R InterPro IPR001296; KEGG: coc:Coch_0964 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1; group 1 glycosyl transferase complement(1077867..1078901) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001750 YP_004045662.1 CDS Riean_0995 NC_014738.1 1078904 1079866 R KEGG: coc:Coch_0965 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1078904..1079866) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001751 YP_004045663.1 CDS Riean_0996 NC_014738.1 1079870 1080862 R KEGG: coc:Coch_0966 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1079870..1080862) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001752 YP_004045664.1 CDS Riean_0997 NC_014738.1 1080855 1081670 R KEGG: coc:Coch_0967 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1080855..1081670) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001753 YP_004045665.1 CDS Riean_0998 NC_014738.1 1081671 1082924 R COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR010164: IPR005814; KEGG: fba:FIC_02150 ornithine aminotransferase; PFAM: aminotransferase class-III; PRIAM: Ornithine aminotransferase; SPTR: Ornithine--oxo-acid transaminase; TIGRFAM: ornithine aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: ornithine aminotransferase; ornithine aminotransferase complement(1081671..1082924) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001754 YP_004045666.1 CDS Riean_0999 NC_014738.1 1083047 1084402 R COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR004549: IPR005479: IPR005481: IPR005482: IPR 011761: IPR011764; KEGG: fba:FIC_02152 acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; SPTR: Acetyl-CoA carboxylase; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit; acetyl-CoA carboxylase, biotin carboxylase complement(1083047..1084402) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001755 YP_004045667.1 CDS Riean_1000 NC_014738.1 1084488 1084979 R COGs: COG0511 Biotin carboxyl carrier protein; InterPro IPR001249: IPR000089; KEGG: fba:FIC_02153 biotin carboxyl carrier protein of acetyl-CoA carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; SPTR: Biotin carboxyl carrier subunit; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: Biotin-requiring enzyme; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(1084488..1084979) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001756 YP_004045668.1 CDS Riean_1001 NC_014738.1 1085074 1085277 R InterPro IPR002677; KEGG: fba:FIC_02154 50S ribosomal protein L32; PFAM: ribosomal L32p protein; SPTR: 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; 50S ribosomal protein l32p complement(1085074..1085277) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001757 YP_004045669.1 CDS Riean_1002 NC_014738.1 1085323 1085877 R InterPro IPR003772; KEGG: fba:FIC_02155 hypothetical protein; PFAM: protein of unknown function DUF177; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized ACR, COG1399; hypothetical protein complement(1085323..1085877) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001758 YP_004045670.1 CDS Riean_1003 NC_014738.1 1085952 1087037 R COGs: COG1995 Pyridoxal phosphate biosynthesis protein; InterPro IPR005255; KEGG: fba:FIC_02156 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; PRIAM: 4-hydroxythreonine-4-phosphate dehydrogenase; SPTR: 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; 4-hydroxythreonine-4-phosphate dehydrogenase complement(1085952..1087037) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001759 YP_004045671.1 CDS Riean_1004 NC_014738.1 1087087 1087668 D COGs: COG0307 Riboflavin synthase alpha chain; InterPro IPR001783; KEGG: fba:FIC_02157 riboflavin synthase alpha chain; PFAM: Lumazine-binding protein; PRIAM: Riboflavin synthase; SPTR: Riboflavin synthase; TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit; riboflavin synthase subunit alpha 1087087..1087668 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001760 YP_004045672.1 CDS Riean_1005 NC_014738.1 1087669 1089123 D COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterPro IPR004358: IPR003660: IPR003661: IPR003594: IPR 005467; KEGG: fba:FIC_02158 nitrogen regulation protein NtrY; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Nitrogen regulation protein ntrY; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; integral membrane sensor signal transduction histidine kinase 1087669..1089123 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001761 YP_004045673.1 CDS Riean_1006 NC_014738.1 1089128 1089835 D COGs: COG4123 O-methyltransferase; InterPro IPR002296: IPR002052: IPR013217; KEGG: fba:FIC_02159 methyltransferase; PFAM: Methyltransferase type 12; SPTR: Methyltransferase; PFAM: Methyltransferase small domain; type 12 methyltransferase 1089128..1089835 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001762 YP_004045674.1 CDS Riean_1007 NC_014738.1 1089843 1090553 R COGs: COG2884 ATPase involved in cell division; InterPro IPR017871: IPR003439: IPR003593; KEGG: fba:FIC_02143 cell division transporter, ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Cell division transporter, ATP-binding protein ftsE; PFAM: ABC transporter; ABC transporter complement(1089843..1090553) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001763 YP_004045675.1 CDS Riean_1008 NC_014738.1 1090725 1090880 R InterPro IPR000271: IPR020939; KEGG: fba:FIC_02142 LSU ribosomal protein L34p; PFAM: ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; 50S ribosomal protein l34p complement(1090725..1090880) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001764 YP_004045676.1 CDS Riean_R0027 NC_014738.1 1091052 1092056 D COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667: IPR003156; KEGG: fba:FIC_02137 hypothetical protein; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: Putative uncharacterized protein; tmRNA as predicted by Rfam (RF00023), score 168.14; PFAM: DHH family; DHHA1 domain; phosphoesterase recj domain-containing protein 1091052..1092056 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001765 YP_004045677.1 CDS Riean_1010 NC_014738.1 1092695 1093432 D KEGG: fba:FIC_02305 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1092695..1093432 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001766 YP_004045678.1 CDS Riean_1011 NC_014738.1 1093692 1095911 D COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR000531; KEGG: fba:FIC_02244 TonB-dependent receptor; PFAM: TonB-dependent receptor; SPTR: Putative uncharacterized protein; tonb-dependent receptor 1093692..1095911 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001767 YP_004045679.1 CDS Riean_1012 NC_014738.1 1096069 1098948 D COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: dfe:Dfer_1098 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; tonb-dependent receptor plug 1096069..1098948 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001768 YP_004045680.1 CDS Riean_1013 NC_014738.1 1098961 1100367 D KEGG: cpi:Cpin_0968 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1098961..1100367 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001769 YP_004045681.1 CDS Riean_1014 NC_014738.1 1100396 1101415 D COGs: COG3540 Phosphodiesterase/alkaline phosphatase D; KEGG: pha:PSHAa1860 alkaline phosphatase D; SPTR: Putative alkaline phosphatase D (APaseD); PFAM: PhoD-like phosphatase; alkaline phosphatase d 1100396..1101415 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001770 YP_004045682.1 CDS Riean_1015 NC_014738.1 1101477 1104632 R COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036: IPR001917: IPR000731; KEGG: fba:FIC_01318 acriflavin resistance protein; PFAM: acriflavin resistance protein; SPTR: Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; acriflavin resistance protein complement(1101477..1104632) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001771 YP_004045683.1 CDS Riean_1016 NC_014738.1 1104704 1105759 R COGs: COG0845 Membrane-fusion protein; InterPro IPR006143: IPR000089; KEGG: fba:FIC_01317 probable Co/Zn/Cd efflux system membrane fusion protein; PFAM: biotin/lipoyl attachment domain-containing protein; SPTR: Probable Co/Zn/Cd efflux system membrane fusion protein; TIGRFAM: efflux transporter, RND family, MFP subunit; TIGRFAM: RND family efflux transporter, MFP subunit; efflux transporter, rnd family, mfp subunit complement(1104704..1105759) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001772 YP_004045684.1 CDS Riean_1017 NC_014738.1 1105766 1107112 R COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: fba:FIC_01316 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein; outer membrane efflux protein complement(1105766..1107112) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001773 YP_004045685.1 CDS Riean_1018 NC_014738.1 1107102 1107716 R InterPro IPR001647; KEGG: fba:FIC_01315 transcriptional regulator; PFAM: regulatory protein TetR; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family; regulatory protein tetr complement(1107102..1107716) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001774 YP_004045686.1 CDS Riean_1019 NC_014738.1 1107847 1108767 D COGs: COG4874 Uncharacterized protein containing a pentein-type domain; InterPro IPR014541; KEGG: fba:FIC_02243 hypothetical protein; SPTR: Amidinotransferase; hypothetical protein 1107847..1108767 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001775 YP_004045687.1 CDS Riean_1020 NC_014738.1 1108830 1109387 R KEGG: fba:FIC_00084 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1108830..1109387) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001776 YP_004045688.1 CDS Riean_1021 NC_014738.1 1109396 1110598 R COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR002986: IPR000183; KEGG: fba:FIC_00085 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(1109396..1110598) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001777 YP_004045689.1 CDS Riean_1022 NC_014738.1 1110634 1111539 R KEGG: fba:FIC_00066 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1110634..1111539) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001778 YP_004045690.1 CDS Riean_1023 NC_014738.1 1111594 1112007 R COGs: COG1660 P-loop-containing kinase; InterPro IPR005337; KEGG: fba:FIC_02372 ATP-binding protein (contains P-loop); SPTR: Putative uncharacterized protein; PFAM: P-loop ATPase protein family; ATP-binding protein (contains p-loop) complement(1111594..1112007) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001779 YP_004045691.1 CDS Riean_1024 NC_014738.1 1112007 1113095 R COGs: COG0216 Protein chain release factor A; InterPro IPR004373: IPR000352: IPR005139; KEGG: fba:FIC_00058 peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; SPTR: Peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1; peptide chain release factor 1 complement(1112007..1113095) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001780 YP_004045692.1 CDS Riean_1025 NC_014738.1 1113217 1113639 D COGs: COG1765 redox protein regulator of disulfide bond formation; InterPro IPR003718; KEGG: fba:FIC_02054 OsmC/Ohr family protein; PFAM: OsmC family protein; SPTR: OsmC family protein; PFAM: OsmC-like protein; osmc family protein 1113217..1113639 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001781 YP_004045693.1 CDS Riean_1026 NC_014738.1 1113689 1114429 R COGs: COG0217 conserved hypothetical protein; InterPro IPR002876; KEGG: fba:FIC_02056 hypothetical protein; PFAM: protein of unknown function DUF28; SPTR: P25; PFAM: Domain of unknown function DUF28; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family; hypothetical protein complement(1113689..1114429) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001782 YP_004045694.1 CDS Riean_1027 NC_014738.1 1114537 1116003 R COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006664: IPR018247: IPR003367: IPR006665; KEGG: fba:FIC_02057 OmpA; PFAM: OmpA/MotB domain protein; Thrombospondin type 3 repeat-containing protein; SPTR: OmpA; PFAM: OmpA family; Thrombospondin type 3 repeat; ompa/motb domain-containing protein complement(1114537..1116003) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001783 YP_004045695.1 CDS Riean_1028 NC_014738.1 1116080 1116538 R COGs: COG0691 tmRNA-binding protein; InterPro IPR000037: IPR020081; KEGG: fba:FIC_02058 tmRNA-binding protein SmpB; PFAM: SmpB protein; SPTR: SsrA-binding protein SmpB; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; TIGRFAM: SsrA-binding protein; ssra-binding protein complement(1116080..1116538) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001784 YP_004045696.1 CDS Riean_1029 NC_014738.1 1116635 1118257 D COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439: IPR003593; KEGG: fba:FIC_02059 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC superfamily ATP binding cassette transporter, ABC protein; PFAM: ABC transporter; ABC transporter 1116635..1118257 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001785 YP_004045697.1 CDS Riean_1030 NC_014738.1 1118343 1118873 D COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: fba:FIC_02389 RNA methylase, SpoU family; PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: SpoU rRNA methylase family protein; PFAM: SpoU rRNA Methylase family; tRNA/rRNA methyltransferase (spou) 1118343..1118873 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001786 YP_004045698.1 CDS Riean_1031 NC_014738.1 1118914 1120719 D COGs: COG4805 conserved hypothetical protein; InterPro IPR010281; KEGG: fba:FIC_00037 protein containing DUF885; PFAM: protein of unknown function DUF885; SPTR: Bifunctional GMP synthase/glutamine amidotransferase protein; PFAM: Bacterial protein of unknown function (DUF885); hypothetical protein 1118914..1120719 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001787 YP_004045699.1 CDS Riean_1032 NC_014738.1 1120832 1125808 D COGs: COG2911 conserved hypothetical protein; InterPro IPR007844: IPR007452; KEGG: fba:FIC_02064 hypothetical protein; PFAM: AsmA family protein; protein of unknown function DUF490; SPTR: Putative uncharacterized protein; PFAM: Family of unknown function (DUF490); asma family protein 1120832..1125808 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001788 YP_004045700.1 CDS Riean_1033 NC_014738.1 1125826 1128147 D COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: fba:FIC_02065 surface antigen (D15); PFAM: surface antigen (D15); SPTR: Outer membrane protein; PFAM: Surface antigen; surface antigen (d15) 1125826..1128147 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001789 YP_004045701.1 CDS Riean_1034 NC_014738.1 1128161 1129069 D COGs: COG1295 membrane protein; InterPro IPR004664; KEGG: fba:FIC_02066 ribonuclease BN; PFAM: ribonuclease BN; SPTR: Ribonuclease BN-like family protein; PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN); ribonuclease bn 1128161..1129069 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001790 YP_004045702.1 CDS Riean_1035 NC_014738.1 1129085 1129894 D COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002347: IPR002198: IPR020904; KEGG: gfo:GFO_0966 short-chain dehydrogenase/reductase family protein; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Putative short chain dehydrogenase; PFAM: short chain dehydrogenase; short-chain dehydrogenase/reductase sdr 1129085..1129894 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001791 YP_004045703.1 CDS Riean_1036 NC_014738.1 1129903 1131276 D COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR012394: IPR016160: IPR015590; KEGG: dhd:Dhaf_2181 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: NAD-dependent aldehyde dehydrogenases; PFAM: Aldehyde dehydrogenase family; aldehyde dehydrogenase 1129903..1131276 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001792 YP_004045704.1 CDS Riean_1037 NC_014738.1 1131357 1133162 R COGs: COG0206 Cell division GTPase; InterPro IPR000158: IPR020805: IPR003008: IPR018316; KEGG: fba:FIC_02461 cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain; SPTR: Cell division protein ftsZ; TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ; cell division protein ftsz complement(1131357..1133162) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001793 YP_004045705.1 CDS Riean_1038 NC_014738.1 1133193 1134560 R COGs: COG0849 Actin-like ATPase involved in cell division; InterPro IPR020823: IPR003494; KEGG: fba:FIC_02462 cell division protein FtsA; PFAM: cell division protein FtsA; SPTR: Cell division protein FtsA; TIGRFAM: cell division protein FtsA; PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA; cell division protein ftsa complement(1133193..1134560) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001794 YP_004045706.1 CDS Riean_1039 NC_014738.1 1134583 1135344 R KEGG: fba:FIC_02463 cell division protein FtsQ; SPTR: Cell division protein FtsQ; manually curated; cell division protein ftsq complement(1134583..1135344) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001795 YP_004045707.1 CDS Riean_1040 NC_014738.1 1135354 1136712 R COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; InterPro IPR005758: IPR000713: IPR013221: IPR004101; KEGG: fba:FIC_02465 UDP-N-acetylmuramate--L-alanine ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate--alanine ligase; UDP-n-acetylmuramate/alanine ligase complement(1135354..1136712) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001796 YP_004045708.1 CDS Riean_1041 NC_014738.1 1136715 1137842 R COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; InterPro IPR006009: IPR004276: IPR007235; KEGG: fba:FIC_02466 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; PRIAM: Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; SPTR: Acetylglucosaminyltransferase; TIGRFAM:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyltransferase family 28 C-terminal domain; Glycosyltransferase family 28 N-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; UDP-n-acetylglucosamine--n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferase complement(1136715..1137842) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001797 YP_004045709.1 CDS Riean_1042 NC_014738.1 1137869 1139110 R COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: fba:FIC_02467 cell division protein FtsW; PFAM: cell cycle protein; SPTR: Cell division protein; PFAM: Cell cycle protein; cell cycle protein complement(1137869..1139110) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001798 YP_004045710.1 CDS Riean_1043 NC_014738.1 1139117 1140442 R COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; InterPro IPR013027: IPR005762: IPR013221: IPR004101; KEGG: fba:FIC_02468 UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: UDP-N-acetylmuramoylalanine--D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; UDP-n-acetylmuramoylalanine--D-glutamate ligase complement(1139117..1140442) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001799 YP_004045711.1 CDS Riean_1044 NC_014738.1 1140470 1141711 R COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR003524: IPR018480: IPR018481; KEGG: fba:FIC_02469 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; SPTR:Phospho-N-acetylmuramoyl-pentapeptide-transfer ase; TIGRFAM:phospho-N-acetylmuramoyl-pentapeptide-trans ferase; PFAM: Glycosyl transferase family 4; Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; phospho-n-acetylmuramoyl-pentapeptide- transferase complement(1140470..1141711) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001800 YP_004045712.1 CDS Riean_1045 NC_014738.1 1141746 1143206 R COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; InterPro IPR005761: IPR000713: IPR013221: IPR004101; KEGG: fba:FIC_02470 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase family, catalytic domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; UDP-n-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(1141746..1143206) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001801 YP_004045713.1 CDS Riean_1046 NC_014738.1 1143220 1145211 R COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR001460: IPR005543; KEGG: fba:FIC_02471 cell division protein FtsI (peptidoglycan synthetase); PFAM: penicillin-binding protein transpeptidase; PASTA domain containing protein; PRIAM: Peptidoglycan glycosyltransferase; SMART: PASTA domain containing protein; SPTR: Cell division protein ftsI (Peptidoglycan synthetase); PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; PASTA domain; peptidoglycan glycosyltransferase complement(1143220..1145211) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001802 YP_004045714.1 CDS Riean_1047 NC_014738.1 1145201 1145557 R KEGG: fba:FIC_02472 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1145201..1145557) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001803 YP_004045715.1 CDS Riean_1048 NC_014738.1 1145579 1146472 R COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; InterPro IPR002903; KEGG: fba:FIC_02473 S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; SPTR: Ribosomal RNA small subunit methyltransferase H; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: MraW methylase family; TIGRFAM: S-adenosyl-methyltransferase MraW; s-adenosyl-methyltransferase mraw complement(1145579..1146472) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001804 YP_004045716.1 CDS Riean_1049 NC_014738.1 1146492 1146992 R COGs: COG2001 conserved hypothetical protein; InterPro IPR003444: IPR020603; KEGG: fba:FIC_02474 cell division protein MraZ; PFAM: MraZ domain; SPTR: Protein mraZ; TIGRFAM: MraZ protein; PFAM: MraZ protein; TIGRFAM: mraZ protein; mraz protein complement(1146492..1146992) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001805 YP_004045717.1 CDS Riean_1050 NC_014738.1 1147210 1147974 D COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: fba:FIC_02476 beta-D-galactosidase, putative; PFAM: alpha/beta hydrolase fold; SPTR: Alpha/beta fold superfamily hydrolase; PFAM: alpha/beta hydrolase fold; alpha/beta fold family hydrolase 1147210..1147974 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001806 YP_004045718.1 CDS Riean_1051 NC_014738.1 1148041 1148667 D COGs: COG0218 GTPase; InterPro IPR019987: IPR005225: IPR002917; KEGG: fba:FIC_02477 GTP-binding protein EngB; PFAM: GTP-binding protein HSR1-related; SPTR: Probable GTP-binding protein engB; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC/EngB; small GTP-binding protein domain; ribosome biogenesis GTP-binding protein ysxc 1148041..1148667 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001807 YP_004045719.1 CDS Riean_1052 NC_014738.1 1148660 1149127 D COGs: COG2153 acyltransferase; InterPro IPR000182; KEGG: ctc:CTC01168 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase; PFAM: Acetyltransferase (GNAT) family; Gcn5-like N-acetyltransferase 1148660..1149127 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001808 YP_004045720.1 CDS Riean_1053 NC_014738.1 1149136 1149678 R COGs: COG0225 Peptide methionine sulfoxide reductase; InterPro IPR002569; KEGG: fba:FIC_02516 peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; PRIAM: Peptide-methionine (S)-S-oxide reductase; SPTR: Peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase; peptide methionine sulfoxide reductase complement(1149136..1149678) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001809 YP_004045721.1 CDS Riean_1054 NC_014738.1 1149962 1152352 D COGs: COG0466 ATP-dependent Lon protease; InterPro IPR001984: IPR004815: IPR008268: IPR003111: IPR 003959: IPR003593; KEGG: fba:FIC_00128 ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; PRIAM: Endopeptidase La; SMART: peptidase S16 lon domain protein; AAA ATPase; SPTR: ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La; ATP-dependent protease la 1149962..1152352 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001810 YP_004045722.1 CDS Riean_1055 NC_014738.1 1152454 1153287 R InterPro IPR019115; KEGG: fba:FIC_02022 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; hypothetical protein complement(1152454..1153287) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001811 YP_004045723.1 CDS Riean_1056 NC_014738.1 1159447 1160112 R KEGG: fba:FIC_00201 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1159447..1160112) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001817 YP_004045724.1 CDS Riean_1057 NC_014738.1 1160105 1160968 R COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR005913; KEGG: fba:FIC_00200 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; PRIAM: dTDP-4-dehydrorhamnose reductase; SPTR: dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase; dtdp-4-dehydrorhamnose reductase complement(1160105..1160968) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001818 YP_004045725.1 CDS Riean_1058 NC_014738.1 1160989 1161483 R COGs: COG0824 thioesterase; KEGG: fba:FIC_00199 predicted thioesterase; SPTR: Putative uncharacterized protein; PFAM: Acyl-ACP thioesterase; thioesterase complement(1160989..1161483) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001819 YP_004045726.1 CDS Riean_1059 NC_014738.1 1161546 1162046 R InterPro IPR005632; KEGG: fba:FIC_00198 outer membrane protein H precursor; PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane protein H; PFAM: Outer membrane protein (OmpH-like); outer membrane chaperone skp (omph) complement(1161546..1162046) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001820 YP_004045727.1 CDS Riean_1060 NC_014738.1 1162102 1162632 R InterPro IPR005632; KEGG: fba:FIC_00197 outer membrane protein H precursor; PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane protein H; PFAM: Outer membrane protein (OmpH-like); outer membrane chaperone skp (omph) complement(1162102..1162632) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001821 YP_004045728.1 CDS Riean_1061 NC_014738.1 1162648 1165200 R COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR016474: IPR010827: IPR000184; KEGG: fba:FIC_00196 outer membrane protein assembly factor YaeT precursor; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; SPTR: Outer membrane protein assembly factor YaeT; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein; outer membrane protein assembly complex, yaet protein complement(1162648..1165200) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001822 YP_004045729.1 CDS Riean_1062 NC_014738.1 1165233 1165979 R COGs: COG0020 Undecaprenyl pyrophosphate synthase; InterPro IPR001441: IPR018520; KEGG: fba:FIC_00195 undecaprenyl pyrophosphate synthetase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; SPTR: Di-trans,poly-cis-decaprenylcistransferase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Putative undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; undecaprenyl diphosphate synthase complement(1165233..1165979) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001823 YP_004045730.1 CDS Riean_1063 NC_014738.1 1165984 1166868 R KEGG: fba:FIC_00194 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1165984..1166868) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001824 YP_004045731.1 CDS Riean_1064 NC_014738.1 1166950 1168254 R COGs: COG1808 membrane protein; InterPro IPR005240; KEGG: cli:Clim_1362 hypothetical protein; PFAM: protein of unknown function DUF389; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF389); TIGRFAM: uncharacterized hydrophobic domain; hypothetical protein complement(1166950..1168254) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001825 YP_004045732.1 CDS Riean_1065 NC_014738.1 1168254 1168907 R COGs: COG0688 Phosphatidylserine decarboxylase; InterPro IPR004428: IPR003817; KEGG: fba:FIC_02436 phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; PRIAM: Phosphatidylserine decarboxylase; SPTR: Phosphatidylserine decarboxylase proenzyme; TIGRFAM: phosphatidylserine decarboxylase related protein; PFAM: Phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase precursor-related protein; phosphatidylserine decarboxylase complement(1168254..1168907) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001826 YP_004045733.1 CDS Riean_1066 NC_014738.1 1168921 1169799 R COGs: COG0575 CDP-diglyceride synthetase; InterPro IPR000374; KEGG: fba:FIC_02435 phosphatidate cytidylyltransferase; PFAM: phosphatidate cytidylyltransferase; SPTR: Phosphatidate cytidylyltransferase; PFAM: Cytidylyltransferase family; phosphatidate cytidylyltransferase complement(1168921..1169799) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001827 YP_004045734.1 CDS Riean_1067 NC_014738.1 1169821 1170405 R KEGG: fba:FIC_02434 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised ACR, YkgG family COG1556; hypothetical protein complement(1169821..1170405) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001828 YP_004045735.1 CDS Riean_1068 NC_014738.1 1170510 1172171 R KEGG: fba:FIC_00106 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1170510..1172171) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001829 YP_004045736.1 CDS Riean_1069 NC_014738.1 1172336 1173745 D COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR001566: IPR010280: IPR002792; KEGG: fba:FIC_01972 RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase; deoxyribonuclease/rho motif-related TRAM; SPTR: RNA methyltransferase, TrmA family; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: TRAM domain; tRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA; 23S rRNA m(5)u-1939 methyltransferase 1172336..1173745 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001830 YP_004045737.1 CDS Riean_1070 NC_014738.1 1173747 1174226 D KEGG: fba:FIC_01971 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1173747..1174226 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001831 YP_004045738.1 CDS Riean_1071 NC_014738.1 1174192 1174848 D KEGG: fba:FIC_01970 conserved hypothetical protein, secreted; SPTR: Putative uncharacterized protein; hypothetical protein 1174192..1174848 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001832 YP_004045739.1 CDS Riean_1072 NC_014738.1 1174911 1175918 R COGs: COG0136 Aspartate-semialdehyde dehydrogenase; InterPro IPR012080: IPR005986: IPR000534: IPR012280; KEGG: fba:FIC_02366 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; PRIAM: Aspartate-semialdehyde dehydrogenase; SPTR: Aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (peptidoglycan organisms); aspartate-semialdehyde dehydrogenase complement(1174911..1175918) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001833 YP_004045740.1 CDS Riean_1073 NC_014738.1 1176017 1176454 R KEGG: fba:FIC_02365 50S ribosomal protein L27; SPTR: Putative uncharacterized protein; 50S ribosomal protein L27 complement(1176017..1176454) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001834 YP_004045741.1 CDS Riean_1074 NC_014738.1 1176540 1177520 R COGs: COG0708 Exonuclease III; InterPro IPR005135; KEGG: fba:FIC_02484 AP endonuclease domain protein; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Putative uncharacterized protein; PFAM: Endonuclease/Exonuclease/phosphatase family; endonuclease/exonuclease/phosphatase complement(1176540..1177520) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001835 YP_004045742.1 CDS Riean_1075 NC_014738.1 1177535 1178269 R COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: fba:FIC_02483 rhomboid family protein; PFAM: Rhomboid family protein; SPTR: Rhomboid family protein; PFAM: Rhomboid family; rhomboid family protein complement(1177535..1178269) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001836 YP_004045743.1 CDS Riean_1076 NC_014738.1 1178285 1180081 R COGs: COG0323 DNA mismatch repair enzyme (predicted ATPase); InterPro IPR014763: IPR014762: IPR003594: IPR013507: IPR 014790: IPR020667; KEGG: fba:FIC_02482 DNA mismatch repair protein MutL; PFAM: DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; MutL dimerisation; SPTR: DNA mismatch repair protein mutL; TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL C terminal dimerisation domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA mismatch repair protein, C-terminal domain; TIGRFAM: DNA mismatch repair protein MutL; DNA mismatch repair protein mutl complement(1178285..1180081) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001837 YP_004045744.1 CDS Riean_1077 NC_014738.1 1180461 1181000 D KEGG: mmz:MmarC7_1517 cobaltochelatase subunit CobN; SPTR: Putative uncharacterized protein; hypothetical protein 1180461..1181000 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001838 YP_004045745.1 CDS Riean_1078 NC_014738.1 1181026 1184145 D InterPro IPR017985: IPR000601; KEGG: fps:FP0087 glycosyl hydrolase; PFAM: PKD domain containing protein; SPTR: Glycosyl hydrolase; PFAM: BNR/Asp-box repeat; pkd domain containing protein 1181026..1184145 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001839 YP_004045746.1 CDS Riean_1079 NC_014738.1 1184526 1184816 D KEGG: ote:Oter_3065 PA14 domain-containing protein; SPTR: PA14 domain protein; hypothetical protein 1184526..1184816 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001840 YP_004045747.1 CDS Riean_1080 NC_014738.1 1184854 1185372 D COGs: COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; InterPro IPR002579; KEGG: fba:FIC_00047 methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; PRIAM: Peptide-methionine (R)-S-oxide reductase; SPTR: Methionine-R-sulfoxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: SelR domain; TIGRFAM: methionine-R-sulfoxide reductase; methionine-r-sulfoxide reductase 1184854..1185372 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001841 YP_004045748.1 CDS Riean_1081 NC_014738.1 1185494 1185952 R KEGG: fps:FP0712 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1185494..1185952) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001842 YP_004045749.1 CDS Riean_1082 NC_014738.1 1185924 1186418 R KEGG: pml:ATP_00233 elongation factor Ts; SPTR: Putative uncharacterized protein; hypothetical protein complement(1185924..1186418) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001843 YP_004045750.1 CDS Riean_1083 NC_014738.1 1186525 1186893 D InterPro IPR001387; KEGG: hap:HAPS_0822 transcriptional regulator/helix-turn-helix domain-containing protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator, Cro/CI family; PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein 1186525..1186893 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001844 YP_004045751.1 CDS Riean_1084 NC_014738.1 1186898 1187329 R COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125; KEGG: fba:FIC_00109 tRNA-specific adenosine-34 deaminase; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: Possible cytosine deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; cmp/dcmp deaminase zinc-binding protein complement(1186898..1187329) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001845 YP_004045752.1 CDS Riean_1085 NC_014738.1 1187393 1187893 R COGs: COG2032 Cu/Zn superoxide dismutase; InterPro IPR018152: IPR001424; KEGG: fba:FIC_02556 superoxide dismutase, copper/zinc binding; PFAM: superoxide dismutase copper/zinc binding; SPTR: Superoxide dismutase [Cu-Zn]; PFAM: Copper/zinc superoxide dismutase (SODC); superoxide dismutase copper/zinc binding protein complement(1187393..1187893) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001846 YP_004045753.1 CDS Riean_1086 NC_014738.1 1188012 1189685 D COGs: COG1165 2-succinyl-6-hydroxy-2 4-cyclohexadiene-1-carboxylate synthase; InterPro IPR004433: IPR012001; KEGG: fba:FIC_02456 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; PRIAM:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex ene-1-carboxylic-acidsynthase; SPTR:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexe ne-1-carboxylatesynthase; TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; TIGRFAM: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase 1188012..1189685 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001847 YP_004045754.1 CDS Riean_1087 NC_014738.1 1189774 1191906 D InterPro IPR019500; KEGG: fba:FIC_02517 hypothetical protein; PFAM: Peptidase S46; SPTR: Dipeptidyl-peptidase 7; PFAM: Peptidase S46; peptidase s46 1189774..1191906 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001848 YP_004045755.1 CDS Riean_1088 NC_014738.1 1191984 1192886 R KEGG: fba:FIC_00028 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3078); hypothetical protein complement(1191984..1192886) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001849 YP_004045756.1 CDS Riean_1089 NC_014738.1 1193630 1194820 D COGs: COG0126 3-phosphoglycerate kinase; InterPro IPR001576; KEGG: fba:FIC_02582 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; PRIAM: Phosphoglycerate kinase; SPTR: Phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; phosphoglycerate kinase 1193630..1194820 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001850 YP_004045757.1 CDS Riean_1090 NC_014738.1 1194895 1195392 D KEGG: cpi:Cpin_6303 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1194895..1195392 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001851 YP_004045758.1 CDS Riean_1091 NC_014738.1 1195447 1196451 R COGs: COG1816 Adenosine deaminase; InterPro IPR006330: IPR001365; KEGG: acd:AOLE_13590 adenosine deaminase; PFAM: adenosine/AMP deaminase; PRIAM: Adenosine deaminase; SPTR: Putative uncharacterized protein; TIGRFAM: adenosine deaminase; PFAM: Adenosine/AMP deaminase; TIGRFAM: adenosine deaminase; adenosine deaminase complement(1195447..1196451) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001852 YP_004045759.1 CDS Riean_1092 NC_014738.1 1196700 1199645 D InterPro IPR012910: IPR000531; KEGG: fba:FIC_02316 hypothetical protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative outer membrane protein, probably involved in nutrient binding; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; tonb-dependent receptor plug 1196700..1199645 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001853 YP_004045760.1 CDS Riean_1093 NC_014738.1 1199666 1201129 D InterPro IPR012944; KEGG: fba:FIC_02315 hypothetical protein; PFAM: RagB/SusD domain protein; SPTR: Putative outer membrane protein, probably involved in nutrient binding; PFAM: SusD family; ragb/susd domain-containing protein 1199666..1201129 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001854 YP_004045761.1 CDS Riean_1094 NC_014738.1 1201210 1202763 R COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: fba:FIC_01172 aminopeptidase, putative; PFAM: peptidase M28; SPTR: Aminopeptidase, putative; PFAM: Peptidase family M28; peptidase m28 complement(1201210..1202763) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001855 YP_004045762.1 CDS Riean_1095 NC_014738.1 1203134 1203655 D KEGG: ava:Ava_0364 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1203134..1203655 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001856 YP_004045763.1 CDS Riean_1096 NC_014738.1 1203822 1203995 D SPTR: Putative uncharacterized protein; hypothetical protein 1203822..1203995 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001857 YP_004045764.1 CDS Riean_1097 NC_014738.1 1203996 1205261 D KEGG: tcr:508293.80 mucin-associated surface protein (MASP); SPTR: Putative uncharacterized protein; hypothetical protein 1203996..1205261 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001858 YP_004045765.1 CDS Riean_1098 NC_014738.1 1205280 1205846 D KEGG: cat:CA2559_04065 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1205280..1205846 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001859 YP_004045766.1 CDS Riean_1099 NC_014738.1 1206062 1206940 R InterPro IPR002559; KEGG: cth:Cthe_2323 transposase, IS4; PFAM: transposase IS4 family protein; SPTR: Transposase; PFAM: Transposase DDE domain; transposase is4 family protein complement(1206062..1206940) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001860 YP_004045767.1 CDS Riean_1100 NC_014738.1 1206996 1207493 D KEGG: ptm:GSPATT00024787001 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1206996..1207493 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001861 YP_004045768.1 CDS Riean_1101 NC_014738.1 1207705 1208535 R InterPro IPR000102: IPR013216; KEGG: fba:FIC_02581 SAM-dependent methyltransferase; PFAM: Methyltransferase type 11; SPTR: SAM dependent methyltransferase; PFAM: Methyltransferase domain; type 11 methyltransferase complement(1207705..1208535) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001862 YP_004045769.1 CDS Riean_1102 NC_014738.1 1208596 1210458 R COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; InterPro IPR004416: IPR020595: IPR002218; KEGG: fba:FIC_02580 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: glucose-inhibited division protein A; SPTR: tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG; TIGRFAM: glucose inhibited division protein A; PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A; glucose inhibited division protein a complement(1208596..1210458) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001863 YP_004045770.1 CDS Riean_1103 NC_014738.1 1210635 1211048 R COGs: COG0319 metal-dependent hydrolase; InterPro IPR002036; KEGG: fba:FIC_02579 predicted metal-dependent hydrolase; PFAM: protein of unknown function UPF0054; SPTR: Putative metalloprotease HMPREF0204_4721; PFAM: Uncharacterized protein family UPF0054; TIGRFAM: metalloprotein, YbeY/UPF0054 family; hypothetical protein complement(1210635..1211048) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001864 YP_004045771.1 CDS Riean_1104 NC_014738.1 1211065 1213230 R COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR000037: IPR002641: IPR010827; KEGG: fba:FIC_02578 patatin-like phospholipase; PFAM: Patatin; surface antigen variable number repeat-containing protein; SPTR: Putative patatin-like phospholipase; PFAM: Patatin-like phospholipase; patatin complement(1211065..1213230) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001865 YP_004045772.1 CDS Riean_1105 NC_014738.1 1213349 1214251 D KEGG: fba:FIC_02308 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1213349..1214251 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001866 YP_004045773.1 CDS Riean_1106 NC_014738.1 1214385 1215989 D COGs: COG1866 Phosphoenolpyruvate carboxykinase (ATP); InterPro IPR001272: IPR015994; KEGG: fba:FIC_02307 phosphoenolpyruvate carboxykinase; PFAM: phosphoenolpyruvate carboxykinase (ATP); PRIAM: Phosphoenolpyruvate carboxykinase (ATP); SPTR: Phosphoenolpyruvate carboxykinase [ATP]; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP); PFAM: Phosphoenolpyruvate carboxykinase; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP); phosphoenolpyruvate carboxykinase 1214385..1215989 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001867 YP_004045774.1 CDS Riean_1107 NC_014738.1 1216146 1216511 D KEGG: taf:THA_1924 GGDEF family protein; SPTR: Ggdef family protein; hypothetical protein 1216146..1216511 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001868 YP_004045775.1 CDS Riean_1108 NC_014738.1 1216638 1217720 D COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: fjo:Fjoh_4863 RND family efflux transporter MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: Acridine efflux pump; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; efflux transporter, rnd family, mfp subunit 1216638..1217720 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001869 YP_004045776.1 CDS Riean_1109 NC_014738.1 1217732 1220899 D COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036: IPR004764: IPR000731; KEGG: cpi:Cpin_5360 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; SPTR: Acriflavin resistance protein D; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; hydrophobe/amphiphile efflux-1 family transporter 1217732..1220899 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001870 YP_004045777.1 CDS Riean_1110 NC_014738.1 1220889 1222325 D COGs: COG1538 Outer membrane protein; InterPro IPR010131: IPR003423; KEGG: cpi:Cpin_5361 RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; SPTR: RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; rnd efflux system, outer membrane lipoprotein, nodt family 1220889..1222325 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001871 YP_004045778.1 CDS Riean_1111 NC_014738.1 1222369 1223751 D COGs: COG1109 Phosphomannomutase; InterPro IPR005841: IPR016066: IPR005844: IPR005845: IPR 005846: IPR005843; KEGG: fba:FIC_02528 phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; SPTR: Possible phosphoglucosamine mutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain i 1222369..1223751 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001872 YP_004045779.1 CDS Riean_1112 NC_014738.1 1223830 1225209 D InterPro IPR001440: IPR019734: IPR013026; KEGG: fba:FIC_02527 conserved hypothetical protein, TPR domain protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: TPR repeat protein; PFAM: Tetratricopeptide repeat; tetratricopeptide tpr_1 repeat-containing protein 1223830..1225209 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001873 YP_004045780.1 CDS Riean_1113 NC_014738.1 1225206 1225424 R COGs: COG3530 conserved hypothetical protein; KEGG: fba:FIC_02491 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1225206..1225424) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001874 YP_004045781.1 CDS Riean_1114 NC_014738.1 1225414 1226535 R COGs: COG0628 permease; InterPro IPR002549; KEGG: fba:FIC_02490 hypothetical protein; PFAM: protein of unknown function UPF0118; SPTR: Membrane protein, putative; PFAM: Domain of unknown function DUF20; hypothetical protein complement(1225414..1226535) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001875 YP_004045782.1 CDS Riean_1115 NC_014738.1 1226558 1227298 R KEGG: fba:FIC_02488 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1226558..1227298) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001876 YP_004045783.1 CDS Riean_1116 NC_014738.1 1227343 1228320 D COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR019999: IPR015890; KEGG: fba:FIC_02487 para-aminobenzoate synthase component I; PFAM: Chorismate binding-like; SPTR: Para-aminobenzoate synthase component I; manually curated; PFAM: chorismate binding enzyme; aminodeoxychorismate synthase, subunit i 1227343..1228320 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001877 YP_004045784.1 CDS Riean_1117 NC_014738.1 1228304 1228897 D COGs: COG0115 BrancheD-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544; KEGG: fba:FIC_02486 aminodeoxychorismate lyase; PFAM: aminotransferase class IV; SPTR: Para-aminobenzoate synthase component I; PFAM: Aminotransferase class IV; aminotransferase class iv 1228304..1228897 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001878 YP_004045785.1 CDS Riean_1118 NC_014738.1 1228936 1229124 R KEGG: bfs:BF2692 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated; hypothetical protein complement(1228936..1229124) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001879 YP_004045786.1 CDS Riean_1119 NC_014738.1 1229127 1229411 R InterPro IPR010916: IPR006121; KEGG: tgr:Tgr7_0577 heavy metal transport/detoxification protein; PFAM: Heavy metal transport/detoxification protein; SPTR: Heavy metal transport/detoxification protein; PFAM: Heavy-metal-associated domain; heavy metal transport/detoxification protein complement(1229127..1229411) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001880 YP_004045787.1 CDS Riean_1120 NC_014738.1 1229652 1231730 D KEGG: coc:Coch_0251 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1229652..1231730 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001881 YP_004045788.1 CDS Riean_1121 NC_014738.1 1232023 1233138 R COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: dat:HRM2_18520 hypothetical protein; PFAM: filamentation induced by cAMP protein Fic; SPTR: Filamentation induced by cAMP protein Fic; PFAM: Fic/DOC family; filamentation induced by camp protein fic complement(1232023..1233138) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001882 YP_004045789.1 CDS Riean_1122 NC_014738.1 1233333 1234607 R KEGG: fba:FIC_02555 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1233333..1234607) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001883 YP_004045790.1 CDS Riean_1123 NC_014738.1 1234647 1236179 R COGs: COG0397 conserved hypothetical protein; InterPro IPR003846; KEGG: fba:FIC_02554 protein of hypothetical function UPF0061; PFAM: protein of unknown function UPF0061; SPTR: Protein of hypothetical function UPF0061; PFAM: Uncharacterized ACR, YdiU/UPF0061 family; hypothetical protein complement(1234647..1236179) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001884 YP_004045791.1 CDS Riean_1124 NC_014738.1 1236243 1238399 R COGs: COG1629 Outer membrane receptor protein mostly Fe transport; KEGG: fps:FP1882 TonB-dependent outer membrane receptorprecursor; SPTR: Probable TonB-dependent outer membrane receptorprecursor; tonb-dependent outer membrane receptor complement(1236243..1238399) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001885 YP_004045792.1 CDS Riean_1125 NC_014738.1 1238565 1239761 D COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR001176: IPR004839; KEGG: fba:FIC_02175 aspartate aminotransferase; PFAM: aminotransferase class I and II; SPTR: Aspartate aminotransferase; PFAM: Aminotransferase class I and II; aminotransferase class i and ii 1238565..1239761 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001886 YP_004045793.1 CDS Riean_1126 NC_014738.1 1240016 1243414 D COGs: COG0060 Isoleucyl-tRNA synthetase; InterPro IPR015905: IPR002301: IPR002300: IPR013155; KEGG: fba:FIC_00180 isoleucyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodon-binding; SPTR: Isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 1240016..1243414 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001887 YP_004045794.1 CDS Riean_1127 NC_014738.1 1243441 1243821 D InterPro IPR000962; KEGG: fba:FIC_00179 DnaK suppressor protein, putative; SPTR: DnaK suppressor protein, putative; PFAM: Prokaryotic dksA/traR C4-type zinc finger; dnak suppressor protein, putative 1243441..1243821 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001888 YP_004045795.1 CDS Riean_1128 NC_014738.1 1243907 1244545 D COGs: COG0597 Lipoprotein signal peptidase; InterPro IPR001872; KEGG: fba:FIC_00176 lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; SPTR: Lipoprotein signal peptidase; PFAM: Signal peptidase (SPase) II; peptidase a8 signal peptidase ii 1243907..1244545 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001889 YP_004045796.1 CDS Riean_1129 NC_014738.1 1244550 1245191 D COGs: COG2949 Uncharacterized membrane protein; InterPro IPR003848; KEGG: bth:BT_0567 protein involved in barrier function of the cell envelope; PFAM: protein of unknown function DUF218; SPTR: Membrane protein; PFAM: DUF218 domain; hypothetical protein 1244550..1245191 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001890 YP_004045797.1 CDS Riean_1130 NC_014738.1 1245271 1247067 D COGs: COG0481 Membrane GTPase LepA; InterPro IPR000795: IPR005225: IPR006297: IPR004161: IPR 000640: IPR013842; KEGG: fba:FIC_02539 GTP-binding protein LepA; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; GTP-binding protein LepA domain protein; SPTR: GTP-binding protein lepA; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; GTP-binding protein LepA C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain; GTP-binding protein lepa 1245271..1247067 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001891 YP_004045798.1 CDS Riean_1131 NC_014738.1 1247267 1247596 D COGs: COG0316 conserved hypothetical protein; InterPro IPR016092: IPR017870: IPR000361; KEGG: fba:FIC_00051 probable iron binding protein from the HesB_IscA_SufA family; PFAM: HesB/YadR/YfhF-family protein; SPTR: Scaffold protein for iron-sulphur cluster assembly; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly accessory protein 1247267..1247596 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001892 YP_004045799.1 CDS Riean_1132 NC_014738.1 1247653 1248069 D KEGG: zpr:ZPR_0216 S23 ribosomal protein; SPTR: S23 ribosomal protein; PFAM: S23 ribosomal protein; s23 ribosomal protein 1247653..1248069 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001893 YP_004045800.1 CDS Riean_1133 NC_014738.1 1248169 1249614 D COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR010231: IPR000825; KEGG: fba:FIC_00052 cysteine desulfurase activator complex subunit SufB; PFAM: SufBD protein; SPTR: ABC superfamily ATP binding cassette transporter, membrane protein; TIGRFAM: FeS assembly protein SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB; iron-regulated ABC transporter membrane component sufb 1248169..1249614 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001894 YP_004045801.1 CDS Riean_1134 NC_014738.1 1249692 1250558 D COGs: COG4588 Accessory colonization factor AcfC contains ABC-type periplasmic domain; KEGG: nwa:Nwat_0735 AcfC-like protein; SPTR: Putative uncharacterized protein; acfc-like protein 1249692..1250558 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001895 YP_004045802.1 CDS Riean_1135 NC_014738.1 1250627 1250938 D KEGG: coc:Coch_1942 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1250627..1250938 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001896 YP_004045803.1 CDS Riean_1136 NC_014738.1 1250959 1251690 D KEGG: bth:BT_0817 lipoprotein, function unknown; SPTR: Lipoprotein; PFAM: Uncharacterized lipoprotein NlpE involved in copper resistance; hypothetical protein 1250959..1251690 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001897 YP_004045804.1 CDS Riean_1137 NC_014738.1 1251746 1252153 D COGs: COG2351 Transthyretin-like protein; InterPro IPR000895: IPR014306; KEGG: coc:Coch_0235 hydroxyisourate hydrolase; PFAM: Transthyretin; SMART: Transthyretin; SPTR: 5-hydroxyisourate hydrolase; TIGRFAM: hydroxyisourate hydrolase; PFAM: HIUase/Transthyretin family; TIGRFAM: hydroxyisourate hydrolase; hydroxyisourate hydrolase 1251746..1252153 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001898 YP_004045805.1 CDS Riean_1138 NC_014738.1 1252224 1252697 D COGs: COG3193 Uncharacterized protein possibly involved in utilization of glycolate and propanediol; InterPro IPR005624; KEGG: fba:FIC_01070 secreted protein; PFAM: protein of unknown function DUF336; SPTR: Putative secreted protein; PFAM: Domain of unknown function (DUF336); hypothetical protein 1252224..1252697 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001899 YP_004045806.1 CDS Riean_1139 NC_014738.1 1252729 1253469 D COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component; InterPro IPR010230: IPR003439: IPR003593; KEGG: fba:FIC_00053 iron-sulfur cluster assembly ATPase protein SufC; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC superfamily ATP binding cassette transporter, ABC protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC; fes assembly ATPase sufc 1252729..1253469 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001900 YP_004045807.1 CDS Riean_1140 NC_014738.1 1253584 1254864 D COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR011542: IPR000825; KEGG: fba:FIC_00054 iron-sulfur cluster assembly protein SufD; PFAM: SufBD protein; SPTR: FeS assembly protein SufD; TIGRFAM: FeS assembly protein SufD; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD, group 1; fes assembly protein sufd 1253584..1254864 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001901 YP_004045808.1 CDS Riean_1141 NC_014738.1 1254931 1255458 D KEGG: fps:FP0101 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1254931..1255458 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001902 YP_004045809.1 CDS Riean_1142 NC_014738.1 1255421 1256182 R COGs: COG1521 Putative transcriptional regulator protein; InterPro IPR004619; KEGG: fba:FIC_00108 pantothenate kinase type III, CoaX-like protein; PFAM: Bvg accessory factor; PRIAM: Pantothenate kinase; SPTR: Pantothenate kinase type III, CoaX-like protein; TIGRFAM: transcriptional activator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III; pantothenate kinase complement(1255421..1256182) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001903 YP_004045810.1 CDS Riean_1143 NC_014738.1 1256210 1258072 R InterPro IPR001202; KEGG: fba:FIC_00107 Zn-dependent aminopeptidase; SPTR: Zn-dependent aminopeptidase; PFAM: Peptidase family M1; zn-dependent aminopeptidase complement(1256210..1258072) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001904 YP_004045811.1 CDS Riean_1144 NC_014738.1 1258191 1258547 D KEGG: fba:FIC_02423 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1258191..1258547 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001905 YP_004045812.1 CDS Riean_1145 NC_014738.1 1258675 1260219 D COGs: COG0642 Signal transduction histidine kinase; InterPro IPR004358: IPR003661: IPR003594: IPR005467; KEGG: fba:FIC_02421 two-component regulatory system, sensor kinase protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Two-component regulatory system, sensor kinase protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; integral membrane sensor signal transduction histidine kinase 1258675..1260219 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001906 YP_004045813.1 CDS Riean_1146 NC_014738.1 1260238 1260924 D COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a wingeD-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: fba:FIC_02420 two-component system, transcriptional regulatory protein; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; SPTR: Response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; winged helix family two component transcriptional regulator 1260238..1260924 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001907 YP_004045814.1 CDS Riean_1147 NC_014738.1 1261085 1261738 D KEGG: fba:FIC_00662 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1261085..1261738 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001908 YP_004045815.1 CDS Riean_1148 NC_014738.1 1261738 1263045 D COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; InterPro IPR005750: IPR001986; KEGG: fba:FIC_00663 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); SPTR: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; UDP-n-acetylglucosamine1- carboxyvinyltransferase 1261738..1263045 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001909 YP_004045816.1 CDS Riean_1149 NC_014738.1 1263070 1263978 D COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro IPR018022: IPR002627; KEGG: fba:FIC_00293 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: tRNA dimethylallyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: IPP transferase; TIGRFAM: tRNA isopentenyltransferase (miaA); tRNA delta(2)-isopentenylpyrophosphate transferase 1263070..1263978 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001910 YP_004045817.1 CDS Riean_1150 NC_014738.1 1263980 1264537 D COGs: COG1225 Peroxiredoxin; InterPro IPR000866: IPR017936; KEGG: fba:FIC_00294 PPO candidate 1; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase; PFAM: AhpC/TSA family; alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen 1263980..1264537 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001911 YP_004045818.1 CDS Riean_1151 NC_014738.1 1264566 1265114 D KEGG: eum:ECUMN_4029 hypothetical protein; exported protein; SPTR: Putative lipoprotein; hypothetical protein 1264566..1265114 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001912 YP_004045819.1 CDS Riean_1152 NC_014738.1 1265264 1265521 R COGs: COG0211 Ribosomal protein L27; InterPro IPR001684: IPR018261; KEGG: fba:FIC_02444 50S ribosomal protein L27; PFAM: ribosomal protein L27; SPTR: 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; 50S ribosomal protein l27p complement(1265264..1265521) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001913 YP_004045820.1 CDS Riean_1153 NC_014738.1 1265556 1266182 R COGs: COG0261 Ribosomal protein L21; InterPro IPR001787: IPR018258; KEGG: fps:FP2217 50S ribosomal protein L21; PFAM: ribosomal protein L21; SPTR: 50S ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21; 50S ribosomal protein l21p complement(1265556..1266182) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001914 YP_004045821.1 CDS Riean_1154 NC_014738.1 1266393 1267073 D KEGG: tdn:Suden_0640 DNA gyrase subunit A; SPTR: Putative uncharacterized protein; hypothetical protein 1266393..1267073 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001915 YP_004045822.1 CDS Riean_1155 NC_014738.1 1267163 1268182 R COGs: COG0812 UDP-N-acetylmuramate dehydrogenase; InterPro IPR003170: IPR006094: IPR011601: IPR016166; KEGG: fba:FIC_02173 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain-containing protein; FAD linked oxidase domain protein; PRIAM: UDP-N-acetylmuramate dehydrogenase; SPTR: UDP-N-acetylmuramate dehydrogenase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; UDP-n-acetylenolpyruvoylglucosamine reductase complement(1267163..1268182) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001916 YP_004045823.1 CDS Riean_1156 NC_014738.1 1268250 1268888 R COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: fba:FIC_00295 hydroxyacylglutathione hydrolase; SPTR: Hydroxyacylglutathione hydrolase; PFAM: Metallo-beta-lactamase superfamily; hydroxyacylglutathione hydrolase complement(1268250..1268888) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001917 YP_004045824.1 CDS Riean_1158 NC_014738.1 1270291 1271595 R COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR003997: IPR000089; KEGG: dfe:Dfer_0709 secretion protein HlyD family protein; PFAM: biotin/lipoyl attachment domain-containing protein; SPTR: Secretion protein HlyD family protein; PFAM: HlyD family secretion protein; biotin/lipoyl attachment domain-containing protein complement(1270291..1271595) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001919 YP_004045825.1 CDS Riean_1159 NC_014738.1 1271606 1273258 R COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR003439: IPR017940; KEGG: dfe:Dfer_0708 ABC transporter related; PFAM: ABC transporter related; SPTR: ABC transporter related; PFAM: ABC transporter; ABC transporter complement(1271606..1273258) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001920 YP_004045826.1 CDS Riean_1160 NC_014738.1 1273513 1275957 R COGs: COG0787 Alanine racemase; InterPro IPR000821: IPR000713: IPR013221: IPR001608: IPR 011079; KEGG: fba:FIC_02577 bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; PFAM: alanine racemase domain protein; Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: Bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; TIGRFAM: alanine racemase; PFAM: Alanine racemase, C-terminal domain; Mur ligase family, catalytic domain; Alanine racemase, N-terminal domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; alanine racemase; alanine racemase complement(1273513..1275957) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001921 YP_004045827.1 CDS Riean_1161 NC_014738.1 1275964 1276551 R COGs: COG1435 Thymidine kinase; InterPro IPR001267; KEGG: fba:FIC_02576 thymidine kinase; PFAM: thymidine kinase; PRIAM: Thymidine kinase; SPTR: Thymidine kinase; PFAM: Thymidine kinase; thymidine kinase complement(1275964..1276551) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001922 YP_004045828.1 CDS Riean_1162 NC_014738.1 1276615 1277457 D KEGG: fba:FIC_02575 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1276615..1277457 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001923 YP_004045829.1 CDS Riean_1163 NC_014738.1 1277462 1278136 D COGs: COG0313 methyltransferase; InterPro IPR008189: IPR000878; KEGG: fba:FIC_02573 tetrapyrrole (corrin-porphyrin) methylase family protein UPF0011; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: Tetrapyrrole (Corrin-Porphyrin) methylase family protein UPF0011; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family; uroporphyrin-iii c/tetrapyrrole (corrin/porphyrin) methyltransferase 1277462..1278136 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001924 YP_004045830.1 CDS Riean_1164 NC_014738.1 1278185 1278928 D COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347: IPR002198: IPR011284: IPR020904; KEGG: fba:FIC_02572 3-oxoacyl-[acyl-carrier protein] reductase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: 3-oxoacyl-[acyl-carrier protein] reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 1278185..1278928 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001925 YP_004045831.1 CDS Riean_1165 NC_014738.1 1279137 1281218 R KEGG: fjo:Fjoh_0536 TonB-dependent receptor; SPTR: TonB-dependent receptor; hypothetical protein complement(1279137..1281218) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001926 YP_004045832.1 CDS Riean_1166 NC_014738.1 1281246 1281623 R KEGG: tme:Tmel_1130 hypothetical protein; SPTR: Probable hydrolase; hypothetical protein complement(1281246..1281623) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001927 YP_004045833.1 CDS Riean_1167 NC_014738.1 1281748 1282506 D COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792; KEGG: cpi:Cpin_5158 transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; SPTR: Putative transcriptional regulator; PFAM: Bacterial regulatory proteins, luxR family; transcriptional regulator, luxr family 1281748..1282506 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001928 YP_004045834.1 CDS Riean_1168 NC_014738.1 1282633 1282926 D KEGG: ath:ArthCp031 acetyl-CoA carboxylase beta subunit; SPTR: Cytosine-specific methyltransferase; hypothetical protein 1282633..1282926 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001929 YP_004045835.1 CDS Riean_1169 NC_014738.1 1283001 1285166 R COGs: COG0557 Exoribonuclease R; InterPro IPR011805: IPR004476: IPR001900: IPR013223: IPR 003029; KEGG: fba:FIC_00002 ribonuclease R; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; SPTR: Possible ribonuclease R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: Ribonuclease B OB domain; RNB domain; S1 RNA binding domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases; rnase r complement(1283001..1285166) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001930 YP_004045836.1 CDS Riean_1170 NC_014738.1 1285232 1285663 R COGs: COG0698 Ribose 5-phosphate isomerase RpiB; InterPro IPR003500: IPR004785; KEGG: fba:FIC_00001 ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; SPTR: Ribose-5-phosphate isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family; sugar-phosphate isomerase, rpib/laca/lacb family complement(1285232..1285663) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001931 YP_004045837.1 CDS Riean_1171 NC_014738.1 1285748 1286851 R COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: fba:FIC_02524 glycosyl transferase, group 1 family protein; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1; group 1 glycosyl transferase complement(1285748..1286851) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001932 YP_004045838.1 CDS Riean_1172 NC_014738.1 1286848 1287060 R InterPro IPR020137; KEGG: cat:CA2559_01580 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1286848..1287060) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001933 YP_004045839.1 CDS Riean_1173 NC_014738.1 1287207 1289714 D COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterPro IPR001270: IPR018368: IPR004176: IPR003959: IPR 013093: IPR019489: IPR003593; KEGG: fba:FIC_02526 ATP-dependent Clp protease, ATP-binding subunit ClpC; PFAM: ATPase AAA-2 domain protein; Clp domain protein; AAA ATPase central domain protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: ATPase with chaperone activity ATP-binding subunit; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); ATPase AAA-2 domain-containing protein 1287207..1289714 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001934 YP_004045840.1 CDS Riean_1174 NC_014738.1 1289786 1290751 D COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: fba:FIC_01931 probable oxidoreductase; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: Probable oxidoreductase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain; oxidoreductase domain-containing protein 1289786..1290751 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001935 YP_004045841.1 CDS Riean_1175 NC_014738.1 1290773 1291192 D COGs: COG2166 SufE protein probably involved in Fe-S center assembly; InterPro IPR003808; KEGG: fba:FIC_02523 sulfur acceptor protein SufE for iron-sulfur cluster assembly; PFAM: Fe-S metabolism associated SufE; SPTR: SufE family Fe-S protein; PFAM: Fe-S metabolism associated domain; cysteine desulfuration protein sufe 1290773..1291192 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001936 YP_004045842.1 CDS Riean_1176 NC_014738.1 1291202 1292164 D COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: fba:FIC_02522 heptosyltransferase; PFAM: glycosyl transferase family 9; SPTR: Heptosyltransferase; PFAM: Glycosyltransferase family 9 (heptosyltransferase); glycosyl transferase family protein 1291202..1292164 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001937 YP_004045843.1 CDS Riean_1177 NC_014738.1 1292164 1293066 D InterPro IPR001173; KEGG: fps:FP1861 glycosyl transferase, group 2 family protein; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase, group 2 family protein; PFAM: Glycosyl transferase family 2; family 2 glycosyl transferase 1292164..1293066 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001938 YP_004045844.1 CDS Riean_1178 NC_014738.1 1293087 1293854 R COGs: COG0496 acid phosphatase; InterPro IPR002828; KEGG: fba:FIC_02567 stationary phase survival protein SurE; PFAM: Survival protein SurE; SPTR: 5'-nucleotidase surE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE; stationary-phase survival protein sure complement(1293087..1293854) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001939 YP_004045845.1 CDS Riean_1179 NC_014738.1 1293989 1296109 D COGs: COG0793 Periplasmic protease; InterPro IPR004447: IPR001478: IPR005151; KEGG: fba:FIC_02566 probable periplasmic tail-specific proteinase; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; PRIAM: C-terminal processing peptidase; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; SPTR: Possible C-terminal processing peptidase; TIGRFAM: carboxyl-terminal protease; PFAM: C-terminal domain of tail specific protease (DUF3340); Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); carboxyl-terminal protease 1293989..1296109 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001940 YP_004045846.1 CDS Riean_1180 NC_014738.1 1296186 1297061 D COGs: COG3264 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: cbd:CBUD_0384 mechanosensitive ion channel; PFAM: MscS Mechanosensitive ion channel; SPTR: Putative efflux protein; PFAM: Mechanosensitive ion channel; mscs mechanosensitive ion channel 1296186..1297061 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001941 YP_004045847.1 CDS Riean_1181 NC_014738.1 1297073 1297870 R InterPro IPR019115; KEGG: fba:FIC_00050 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; hypothetical protein complement(1297073..1297870) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001942 YP_004045848.1 CDS Riean_1182 NC_014738.1 1297897 1298304 R COGs: COG3011 conserved hypothetical protein; InterPro IPR007263; KEGG: fba:FIC_00661 hypothetical protein; PFAM: thiol-disulphide oxidoreductase DCC; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF393; thiol-disulfide oxidoreductase dcc complement(1297897..1298304) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001943 YP_004045849.1 CDS Riean_1183 NC_014738.1 1298311 1298805 R KEGG: fba:FIC_00660 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1298311..1298805) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001944 YP_004045850.1 CDS Riean_1184 NC_014738.1 1298910 1299326 D COGs: COG0757 3-dehydroquinate dehydratase II; InterPro IPR001874; KEGG: fba:FIC_02063 3-dehydroquinate dehydratase II; PFAM: dehydroquinase class II; PRIAM: 3-dehydroquinate dehydratase; SPTR: 3-dehydroquinate dehydratase II; TIGRFAM: 3-dehydroquinate dehydratase, type II; PFAM: Dehydroquinase class II; TIGRFAM: 3-dehydroquinate dehydratase, type II; 3-dehydroquinate dehydratase 1298910..1299326 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001945 YP_004045851.1 CDS Riean_1185 NC_014738.1 1299427 1300695 D COGs: COG1774 Uncharacterized homolog of PSP1; InterPro IPR007557; KEGG: fba:FIC_02551 tpl protein; PFAM: PSP1 domain protein; SPTR: Tpl protein; PFAM: PSP1 C-terminal conserved region; psp1 domain-containing protein 1299427..1300695 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001946 YP_004045852.1 CDS Riean_1186 NC_014738.1 1300695 1301165 D InterPro IPR020018; KEGG: fba:FIC_02552 GldH; SPTR: GldH; TIGRFAM: gliding motility-associated lipoprotein GldH; TIGRFAM: gliding motility-associated lipoprotein GldH; gliding motility protein gldh 1300695..1301165 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001947 YP_004045853.1 CDS Riean_1187 NC_014738.1 1301178 1303547 D COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR001264: IPR001460; KEGG: fba:FIC_02553 monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Penicillin-binding protein 1A; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; peptidoglycan glycosyltransferase 1301178..1303547 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001948 YP_004045854.1 CDS Riean_1188 NC_014738.1 1303851 1304603 D COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2; InterPro IPR000594; KEGG: rfr:Rfer_3218 UBA/ThiF-type NAD/FAD binding protein; PFAM: UBA/THIF-type NAD/FAD binding protein; SPTR: UBA/THIF-type NAD/FAD binding protein; PFAM: ThiF family; uba/thif-type nad/fad binding protein 1303851..1304603 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001949 YP_004045855.1 CDS Riean_1189 NC_014738.1 1304600 1305358 R COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792; KEGG: cpi:Cpin_5158 transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; SPTR: Putative transcriptional regulator; PFAM: Bacterial regulatory proteins, luxR family; transcriptional regulator, luxr family complement(1304600..1305358) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001950 YP_004045856.1 CDS Riean_1190 NC_014738.1 1305540 1305677 D KEGG: gla:GL50803_94510 Tenascin-X precursor; hypothetical protein 1305540..1305677 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001951 YP_004045857.1 CDS Riean_1191 NC_014738.1 1305753 1306334 D COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439: IPR003593; KEGG: pmo:Pmob_0368 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter; PFAM: ABC transporter; ABC transporter 1305753..1306334 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001952 YP_004045858.1 CDS Riean_1192 NC_014738.1 1306321 1306980 D KEGG: bcc:BCc_107 NADH dehydrogenase I chain L; SPTR: NADH dehydrogenase I chain L; hypothetical protein 1306321..1306980 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001953 YP_004045859.1 CDS Riean_1193 NC_014738.1 1306983 1307762 D InterPro IPR019115; KEGG: fba:FIC_00050 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; hypothetical protein 1306983..1307762 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001954 YP_004045860.1 CDS Riean_1194 NC_014738.1 1307934 1308470 R KEGG: fba:FIC_02419 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1307934..1308470) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001955 YP_004045861.1 CDS Riean_1195 NC_014738.1 1308685 1310034 D InterPro IPR003088: IPR009056: IPR011031; KEGG: fba:FIC_02418 molybdopterin oxidoreductase subunit, predicted; chaperone protein HtpG; PFAM: cytochrome c class I; SPTR: Molybdopterin oxidoreductase subunit, predicted; chaperone protein HtpG; PFAM: Class III cytochrome C family; Cytochrome c; quinol:cytochrome c oxidoreductase pentaheme cytochrome subunit 1308685..1310034 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001956 YP_004045862.1 CDS Riean_1196 NC_014738.1 1310059 1313109 D COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR006311: IPR017896; KEGG: fba:FIC_02417 molybdopterin oxidoreductase, iron-sulfur binding subunit; SPTR: Molybdopterin oxidoreductase, iron-sulfur binding subunit; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; quinol:cytochrome c oxidoreductase iron-sulfur protein 1310059..1313109 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001957 YP_004045863.1 CDS Riean_1197 NC_014738.1 1313127 1314524 D COGs: COG5557 Polysulphide reductase; InterPro IPR005614; KEGG: fba:FIC_02416 molybdopterin oxidoreductase; PFAM: Polysulphide reductase NrfD; SPTR: Probable molybdopterin oxidoreductase; PFAM: Polysulphide reductase, NrfD; quinol:cytochrome c oxidoreductase quinone-binding subunit 1 1313127..1314524 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001958 YP_004045864.1 CDS Riean_1198 NC_014738.1 1314511 1315032 D InterPro IPR001969; KEGG: fba:FIC_02415 ABC-type Fe3+ transport system protein; molybdenum transport protein, putative; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3341); quinol:cytochrome c oxidoreductase membrane protein 1314511..1315032 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001959 YP_004045865.1 CDS Riean_1199 NC_014738.1 1315025 1315711 D InterPro IPR009056; KEGG: fba:FIC_02414 hypothetical protein; SPTR: Cytochrome c family protein; PFAM: Cytochrome c; quinol:cytochrome c oxidoreductase monoheme cytochrome subunit 1315025..1315711 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001960 YP_004045866.1 CDS Riean_1200 NC_014738.1 1315726 1317057 D KEGG: fba:FIC_02413 hypothetical protein; SPTR: Membrane protein; quinol:cytochrome c oxidoreductase quinone-binding subunit 2 1315726..1317057 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001961 YP_004045867.1 CDS Riean_1201 NC_014738.1 1317143 1318315 D KEGG: fba:FIC_02412 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: NTF2-like N-terminal transpeptidase domain; hypothetical protein 1317143..1318315 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001962 YP_004045868.1 CDS Riean_1202 NC_014738.1 1318321 1318857 D COGs: COG0503 Adenine/guanine phosphoribosyltransferase and related PRPP-binding protein; InterPro IPR000836: IPR005764; KEGG: fba:FIC_02411 adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: Adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: adenine phosphoribosyltransferase; adenine phosphoribosyltransferase 1318321..1318857 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001963 YP_004045869.1 CDS Riean_1203 NC_014738.1 1318924 1319637 D KEGG: fba:FIC_02410 TPR domain protein; SPTR: TPR domain protein; hypothetical protein 1318924..1319637 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001964 YP_004045870.1 CDS Riean_1204 NC_014738.1 1319667 1320152 D COGs: COG0054 Riboflavin synthase beta-chain; InterPro IPR002180; KEGG: fba:FIC_02409 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; PRIAM: Riboflavin synthase; SPTR: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase 1319667..1320152 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001965 YP_004045871.1 CDS Riean_1205 NC_014738.1 1320170 1321024 D COGs: COG2321 metalloprotease; InterPro IPR007343; KEGG: fba:FIC_02406 neutral zinc metallopeptidase; PFAM: protein of unknown function zinc metallopeptidase; SPTR: Neutral zinc metallopeptidase; PFAM: Putative neutral zinc metallopeptidase; hypothetical protein 1320170..1321024 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001966 YP_004045872.1 CDS Riean_1206 NC_014738.1 1321111 1321440 D KEGG: dfe:Dfer_5657 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1321111..1321440 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001967 YP_004045873.1 CDS Riean_1207 NC_014738.1 1321562 1322656 D KEGG: fba:FIC_02446 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Acyltransferase family; hypothetical protein 1321562..1322656 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001968 YP_004045874.1 CDS Riean_1208 NC_014738.1 1322712 1323356 D KEGG: fba:FIC_02426 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1322712..1323356 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001969 YP_004045875.1 CDS Riean_1209 NC_014738.1 1323379 1324122 D COGs: COG1587 Uroporphyrinogen-III synthase; InterPro IPR003754; KEGG: fba:FIC_02425 uroporphyrinogen-III synthase HemD, putative; PFAM: Uroporphyrinogen III synthase HEM4; SPTR: Possible uroporphyrinogen-III synthase; PFAM: Uroporphyrinogen-III synthase HemD; uroporphyrinogen-iii synthase 1323379..1324122 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001970 YP_004045876.1 CDS Riean_1210 NC_014738.1 1324214 1326262 D COGs: COG1770 Protease II; InterPro IPR002470: IPR004106; KEGG: fba:FIC_02424 secreted peptidase, family S9; PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller; PRIAM: Oligopeptidase B; SPTR: Secreted peptidase, family S9; PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase family; oligopeptidase b 1324214..1326262 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001971 YP_004045877.1 CDS Riean_1211 NC_014738.1 1326534 1326770 D COGs: COG0227 Ribosomal protein L28; InterPro IPR001383; KEGG: fba:FIC_02172 LSU ribosomal protein L28p; PFAM: ribosomal protein L28; SPTR: 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; 50S ribosomal protein l28p 1326534..1326770 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001972 YP_004045878.1 CDS Riean_1212 NC_014738.1 1326781 1326963 D InterPro IPR001705; KEGG: fba:FIC_02171 LSU ribosomal protein L33p; PFAM: ribosomal protein L33; SPTR: 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; 50S ribosomal protein l33p 1326781..1326963 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001973 YP_004045879.1 CDS Riean_1213 NC_014738.1 1326986 1327135 D KEGG: fba:FIC_02170 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1326986..1327135 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001974 YP_004045880.1 CDS Riean_1214 NC_014738.1 1327236 1328192 D COGs: COG0552 Signal recognition particle GTPase; InterPro IPR004390: IPR000897: IPR013822: IPR003593; KEGG: fba:FIC_02169 signal recognition particle receptor protein FtsY (=alpha subunit); PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; SPTR: Signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY; signal recognition particle-docking protein ftsy 1327236..1328192 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001975 YP_004045881.1 CDS Riean_1215 NC_014738.1 1328233 1328487 D InterPro IPR007341; KEGG: sen:SACE_4030 transglycosylase-associated protein; PFAM: Transglycosylase-associated protein; SPTR: Transglycosylase-associated protein; PFAM: Transglycosylase associated protein; transglycosylase-associated protein 1328233..1328487 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001976 YP_004045882.1 CDS Riean_1216 NC_014738.1 1328674 1331193 D COGs: COG0550 Topoisomerase IA; InterPro IPR000380: IPR005733: IPR006171: IPR013497: IPR 006154: IPR003601: IPR003602; KEGG: fba:FIC_00182 DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; SPTR: DNA topoisomerase; TIGRFAM: DNA topoisomerase I; PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial; DNA topoisomerase i 1328674..1331193 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001977 YP_004045883.1 CDS Riean_1217 NC_014738.1 1331205 1332269 D InterPro IPR006035; KEGG: fba:FIC_00186 hypothetical protein; SPTR: Formiminoglutamase; PFAM: Arginase family; hypothetical protein 1331205..1332269 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001978 YP_004045884.1 CDS Riean_1218 NC_014738.1 1332271 1333263 D COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: fba:FIC_00188 beta-1,3-glucosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Glycosyltransferase; PFAM: Glycosyl transferase family 2; family 2 glycosyl transferase 1332271..1333263 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001979 YP_004045885.1 CDS Riean_1219 NC_014738.1 1333273 1334397 D KEGG: fba:FIC_00189 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1333273..1334397 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001980 YP_004045886.1 CDS Riean_1221 NC_014738.1 1335550 1336449 D KEGG: fba:FIC_00191 polysaccharide export outer membrane protein; SPTR: Polysaccharide export outer membrane protein; PFAM: Polysaccharide biosynthesis/export protein; gliding motility protein epsa 1335550..1336449 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001982 YP_004045887.1 CDS Riean_1222 NC_014738.1 1336452 1338962 D COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR005702; KEGG: fba:FIC_00192 tyrosine-protein kinase wzc; PRIAM: Non-specific protein-tyrosine kinase; SPTR: Tyrosine-protein kinase involved in exopolysaccharide biosynthesis; TIGRFAM: capsular exopolysaccharide family; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family; gliding motility protein epsb 1336452..1338962 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001983 YP_004045888.1 CDS Riean_1223 NC_014738.1 1339050 1341641 D COGs: COG0249 Mismatch repair ATPase (MutS family); InterPro IPR005748: IPR000432: IPR000408: IPR007695: IPR 007860: IPR007696: IPR007861; KEGG: fba:FIC_02388 DNA mismatch repair protein MutS; PFAM: MutS III domain protein; DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS IV domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; SPTR: DNA mismatch repair protein; TIGRFAM: DNA mismatch repair protein MutS; PFAM: MutS family domain IV; MutS domain II; MutS domain V; MutS domain I; MutS domain III; TIGRFAM: DNA mismatch repair protein MutS; DNA mismatch repair protein muts 1339050..1341641 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001984 YP_004045889.1 CDS Riean_1225 NC_014738.1 1342916 1343632 D COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: fba:FIC_02427 dolichol-phosphate mannosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Possible dolichyl-phosphate beta-D-mannosyltransferase; PFAM: Glycosyl transferase family 2; family 2 glycosyl transferase 1342916..1343632 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001986 YP_004045890.1 CDS Riean_1226 NC_014738.1 1343629 1344027 D KEGG: fba:FIC_02428 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1343629..1344027 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001987 YP_004045891.1 CDS Riean_1227 NC_014738.1 1344002 1345171 D COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; InterPro IPR004803: IPR002616: IPR005829; KEGG: fba:FIC_02429 tRNA-guanine transglycosylase; PFAM: Queuine/other tRNA-ribosyltransferase; PRIAM: tRNA-guanine transglycosylase; SPTR: Queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming; tRNA-guanine transglycosylase 1344002..1345171 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001988 YP_004045892.1 CDS Riean_1228 NC_014738.1 1345372 1346466 D COGs: COG0795 permease; InterPro IPR005495; KEGG: fba:FIC_02430 hypothetical protein; PFAM: permease YjgP/YjgQ family protein; SPTR: Membrane protein, putative; PFAM: Predicted permease YjgP/YjgQ family; permease yjgp/yjgq family protein 1345372..1346466 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001989 YP_004045893.1 CDS Riean_1229 NC_014738.1 1346460 1347170 R COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR004408: IPR004143; KEGG: fba:FIC_02431 biotin-protein ligase; PFAM: biotin/lipoate A/B protein ligase; SPTR: Biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region; biotin--acetyl-CoA-carboxylase ligase complement(1346460..1347170) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001990 YP_004045894.1 CDS Riean_1230 NC_014738.1 1347246 1347614 D COGs: COG0799 Iojap protein; InterPro IPR004394; KEGG: fba:FIC_02432 iojap family protein; PFAM: Iojap-related protein; SPTR: Iojap family protein; TIGRFAM: iojap-like protein; PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-like ribosome-associated protein; iojap family protein 1347246..1347614 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001991 YP_004045895.1 CDS Riean_1231 NC_014738.1 1347630 1349606 D COGs: COG0465 ATP-dependent Zn protease; InterPro IPR005936: IPR003959: IPR000642: IPR003593: IPR 003960; KEGG: fba:FIC_02433 cell division protein FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; PRIAM: Microtubule-severing ATPase; SMART: AAA ATPase; SPTR: Cell division protein ftsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH; ATP-dependent metalloprotease ftsh 1347630..1349606 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001992 YP_004045896.1 CDS Riean_1232 NC_014738.1 1349674 1350975 R COGs: COG1757 Na+/H+ antiporter; InterPro IPR018461; KEGG: fba:FIC_00888 methionine transporter MetT; PFAM: Na+/H+ antiporter NhaC-like; SPTR: Methionine transporter MetT; PFAM: Na+/H+ antiporter family; TC 2.A.35; transporter, nhac family complement(1349674..1350975) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001993 YP_004045897.1 CDS Riean_1233 NC_014738.1 1351273 1352079 R KEGG: pfa:PF14_0140 conserved Plasmodium protein, unknown function; SPTR: Possible conserved carbohydrate-binding protein; hypothetical protein complement(1351273..1352079) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001994 YP_004045898.1 CDS Riean_1234 NC_014738.1 1352192 1352551 R KEGG: pgi:PG1454 integrase; SPTR: Tyrosine type site-specific recombinase; hypothetical protein complement(1352192..1352551) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001995 YP_004045899.1 CDS Riean_1235 NC_014738.1 1352838 1353269 R KEGG: tva:TVAG_003690 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1352838..1353269) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001996 YP_004045900.1 CDS Riean_1236 NC_014738.1 1353339 1353620 R KEGG: gfo:GFO_2605 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1353339..1353620) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001997 YP_004045901.1 CDS Riean_1237 NC_014738.1 1353638 1354027 R KEGG: lme:LEUM_0807 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1353638..1354027) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001998 YP_004045902.1 CDS Riean_1238 NC_014738.1 1354075 1354971 R KEGG: coc:Coch_0676 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1354075..1354971) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001999 YP_004045903.1 CDS Riean_1239 NC_014738.1 1355023 1356126 R KEGG: rbi:RB2501_07155 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1355023..1356126) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002000 YP_004045904.1 CDS Riean_1240 NC_014738.1 1356212 1356439 D InterPro IPR001387; KEGG: chu:CHU_0810 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein 1356212..1356439 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002001 YP_004045905.1 CDS Riean_1241 NC_014738.1 1356699 1357085 R KEGG: rbi:RB2501_07085 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1356699..1357085) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002002 YP_004045906.1 CDS Riean_1242 NC_014738.1 1357639 1360683 D InterPro IPR002296: IPR002052; KEGG: bfs:BF1252 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1357639..1360683 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002003 YP_004045907.1 CDS Riean_1243 NC_014738.1 1360686 1361327 D KEGG: bfs:BF1251 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1360686..1361327 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002004 YP_004045908.1 CDS Riean_1244 NC_014738.1 1361335 1362540 R KEGG: bfr:BF3462 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1361335..1362540) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002005 YP_004045909.1 CDS Riean_1245 NC_014738.1 1362518 1363405 R InterPro IPR003593; KEGG: nwa:Nwat_3151 AAA ATPase; SMART: AAA ATPase; SPTR: Putative uncharacterized protein; AAA ATPase complement(1362518..1363405) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002006 YP_004045910.1 CDS Riean_1246 NC_014738.1 1363843 1366479 R KEGG: pbe:PB000072.03.0 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Type III restriction enzyme, res subunit; hypothetical protein complement(1363843..1366479) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002007 YP_004045911.1 CDS Riean_1247 NC_014738.1 1366530 1367738 R COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: gfo:GFO_0671 phage integrase family protein; PFAM: integrase family protein; SPTR: Tyrosine type site-specific recombinase; PFAM: Phage integrase family; integrase family protein complement(1366530..1367738) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002008 YP_004045912.1 CDS Riean_1248 NC_014738.1 1368072 1369475 R COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR001478: IPR004387: IPR008915; KEGG: fba:FIC_00095 membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; SPTR: Membrane-associated zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: Peptidase family M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP; membrane-associated zinc metalloprotease complement(1368072..1369475) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002010 YP_004045913.1 CDS Riean_1249 NC_014738.1 1369510 1369938 R KEGG: fba:FIC_00094 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1369510..1369938) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002011 YP_004045914.1 CDS Riean_1250 NC_014738.1 1370019 1370780 D COGs: COG0388 amidohydrolase; InterPro IPR003010: IPR001110; KEGG: fba:FIC_00093 hydrolase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Aminohydrolase; PFAM: Carbon-nitrogen hydrolase; nitrilase/cyanide hydratase and apolipoprotein n-acyltransferase 1370019..1370780 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002012 YP_004045915.1 CDS Riean_1251 NC_014738.1 1370844 1371890 R KEGG: cef:CE0721 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1370844..1371890) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002013 YP_004045916.1 CDS Riean_1252 NC_014738.1 1371999 1374035 D COGs: COG0556 Helicase subunit of the DNA excision repair complex; InterPro IPR001943: IPR014021: IPR001650: IPR004807: IPR 006935: IPR014001; KEGG: fba:FIC_02492 excinuclease ABC subunit B; PFAM: helicase domain protein; type III restriction protein res subunit; UvrB/UvrC protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: UvrABC system protein B; TIGRFAM: excinuclease ABC, B subunit; PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit; excinuclease ABC, b subunit 1371999..1374035 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002014 YP_004045917.1 CDS Riean_1253 NC_014738.1 1374061 1374585 D COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: fjo:Fjoh_3131 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; transcriptional regulator, crp/fnr family 1374061..1374585 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002015 YP_004045918.1 CDS Riean_1254 NC_014738.1 1374635 1375186 D KEGG: fjo:Fjoh_3132 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1374635..1375186 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002016 YP_004045919.1 CDS Riean_1255 NC_014738.1 1375402 1375614 D KEGG: sli:Slin_6287 RagB/SusD domain protein; SPTR: RagB/SusD domain protein; hypothetical protein 1375402..1375614 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002017 YP_004045920.1 CDS Riean_1256 NC_014738.1 1375734 1376969 D COGs: COG2067 Long-chain fatty acid transport protein; InterPro IPR005017; KEGG: fba:FIC_02550 outer membrane protein P1, putative; PFAM: membrane protein involved in aromatic hydrocarbon degradation; SPTR: Outer membrane protein P1, putative; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX); aromatic hydrocarbon degradation membrane protein 1375734..1376969 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002018 YP_004045921.1 CDS Riean_1257 NC_014738.1 1376982 1378442 D InterPro IPR001087; KEGG: fba:FIC_02549 hypothetical protein; PFAM: lipolytic protein G-D-S-L family; SPTR: Probable outer membrane protein; lipolytic protein g-D-s-l family 1376982..1378442 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002019 YP_004045922.1 CDS Riean_1258 NC_014738.1 1378532 1379470 D COGs: COG0462 Phosphoribosylpyrophosphate synthetase; InterPro IPR005946: IPR000836: IPR000842; KEGG: fba:FIC_02548 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; PRIAM: Ribose-phosphate diphosphokinase; SPTR: Ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase; ribose-phosphate pyrophosphokinase 1378532..1379470 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002020 YP_004045923.1 CDS Riean_1259 NC_014738.1 1379527 1380135 D COGs: COG1825 Ribosomal protein L25 (general stress protein Ctc); InterPro IPR001021: IPR020055; KEGG: fba:FIC_02547 50S ribosomal protein L25/general stress protein Ctc; PFAM: Ribosomal protein L25-like; SPTR: 50S ribosomal protein L25; TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: Ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form; 50S ribosomal protein l25p 1379527..1380135 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002021 YP_004045924.1 CDS Riean_1260 NC_014738.1 1380216 1380794 D KEGG: fba:FIC_02520 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: SprT-like family; hypothetical protein 1380216..1380794 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002022 YP_004045925.1 CDS Riean_1261 NC_014738.1 1380808 1381896 D COGs: COG0836 Mannose-1-phosphate guanylyltransferase; InterPro IPR005835; KEGG: fba:FIC_02521 mannose-1-phosphate guanylyltransferase (GDP); PFAM: Nucleotidyl transferase; PRIAM: Mannose-1-phosphate guanylyltransferase; SPTR: Mannose-1-phosphate guanylyltransferase (GDP); PFAM: Nucleotidyl transferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; mannose-1-phosphate guanylyltransferase (gdp) 1380808..1381896 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002023 YP_004045926.1 CDS Riean_1262 NC_014738.1 1381940 1383472 D COGs: COG0606 ATPase with chaperone activity; InterPro IPR004482: IPR001208: IPR000523: IPR003593; KEGG: fba:FIC_00029 MG(2+) chelatase family protein / ComM-related protein; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase; SPTR: ATPase; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: Magnesium chelatase, subunit ChlI; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: Mg chelatase-related protein; mg chelatase, subunit chli 1381940..1383472 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002024 YP_004045927.1 CDS Riean_1263 NC_014738.1 1383488 1384279 D InterPro IPR019115; KEGG: fba:FIC_02022 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; hypothetical protein 1383488..1384279 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002025 YP_004045928.1 CDS Riean_1264 NC_014738.1 1384497 1385087 D COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: fba:FIC_00172 RNA polymerase sigma-70 factor, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase sigma-70 factor, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: ECF sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; ECF subfamily RNA polymerase sigma-70 factor 1384497..1385087 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002026 YP_004045929.1 CDS Riean_1265 NC_014738.1 1385285 1385980 D COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR006439: IPR005834; KEGG: fba:FIC_00174 2-haloalkanoic acid dehalogenase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: 2-haloalkanoic acid dehalogenase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; HAD superfamily (subfamily IA) hydrolase, TIGR02254; haD-superfamily hydrolase, subfamily ia, variant 1 1385285..1385980 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002027 YP_004045930.1 CDS Riean_1266 NC_014738.1 1386078 1387046 D COGs: COG0180 Tryptophanyl-tRNA synthetase; InterPro IPR002306: IPR002305; KEGG: fba:FIC_00175 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; PRIAM: Tryptophan--tRNA ligase; SPTR: Tryptophan--tRNA ligase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase; tryptophanyl-tRNA synthetase 1386078..1387046 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002028 YP_004045931.1 CDS Riean_1267 NC_014738.1 1387104 1387790 D KEGG: fba:FIC_00003 hypothetical protein; SPTR: LysE type amino acid translocator; PFAM: LysE type translocator; hypothetical protein 1387104..1387790 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002029 YP_004045932.1 CDS Riean_1268 NC_014738.1 1387797 1388726 D COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: fba:FIC_00004 muramoyltetrapeptide carboxypeptidase; PFAM: peptidase U61 LD-carboxypeptidase A; SPTR: Possible U61 family carboxypeptidase; PFAM: LD-carboxypeptidase; peptidase u61 lD-carboxypeptidase a 1387797..1388726 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002030 YP_004045933.1 CDS Riean_1269 NC_014738.1 1388730 1389098 D COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; InterPro IPR003509; KEGG: fba:FIC_00006 hypothetical protein; PFAM: Uncharacterised protein family UPF0102; SPTR: UPF0102 protein HMPREF0204_4709; PFAM: Uncharacterised protein family UPF0102; TIGRFAM: conserved hypothetical protein TIGR00252; hypothetical protein 1388730..1389098 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002031 YP_004045934.1 CDS Riean_1270 NC_014738.1 1389207 1389866 D KEGG: fba:FIC_02558 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1389207..1389866 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002032 YP_004045935.1 CDS Riean_1271 NC_014738.1 1389924 1390949 D COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: fba:FIC_02565 two-component system sensor protein histidine kinase; PFAM: histidine kinase internal region; SPTR: Putative two-component system sensor protein histidine kinase; PFAM: Histidine kinase; signal transduction histidine kinase, lyts 1389924..1390949 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002033 YP_004045936.1 CDS Riean_1272 NC_014738.1 1390960 1391706 D COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789: IPR007492; KEGG: fba:FIC_02562 two-component system response regulator; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator LytR; PFAM: Response regulator receiver domain; LytTr DNA-binding domain; two component transcriptional regulator, lyttr family 1390960..1391706 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002034 YP_004045937.1 CDS Riean_1273 NC_014738.1 1391703 1392068 R COGs: COG3296 conserved hypothetical protein; KEGG: zpr:ZPR_1830 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1391703..1392068) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002035 YP_004045938.1 CDS Riean_1274 NC_014738.1 1392171 1392836 R COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: fba:FIC_00104 probable lipoprotein; PFAM: NLP/P60 protein; SPTR: Possible lipoprotein; PFAM: NlpC/P60 family; nlp/p60 protein complement(1392171..1392836) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002036 YP_004045939.1 CDS Riean_1275 NC_014738.1 1393065 1395260 R COGs: COG3968 Uncharacterized protein related to glutamine synthetase; InterPro IPR008146; KEGG: fba:FIC_00105 glutamine synthetase type III, GlnN; PFAM: glutamine synthetase catalytic region; SPTR: Glutamate--ammonia ligase; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase type III N terminal; glutamine synthetase complement(1393065..1395260) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002037 YP_004045940.1 CDS Riean_1276 NC_014738.1 1395358 1396467 R KEGG: fba:FIC_00028 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3078); hypothetical protein complement(1395358..1396467) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002038 YP_004045941.1 CDS Riean_1277 NC_014738.1 1396616 1397338 D InterPro IPR002610; KEGG: fba:FIC_00027 hypothetical protein; PFAM: Rhomboid family protein; SPTR: Putative uncharacterized protein; PFAM: Rhomboid family; rhomboid family protein 1396616..1397338 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002039 YP_004045942.1 CDS Riean_1278 NC_014738.1 1397342 1397812 R InterPro IPR015018; KEGG: cpi:Cpin_0330 hypothetical protein; PFAM: Domain of unknown function DUF1905; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1905); hypothetical protein complement(1397342..1397812) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002040 YP_004045943.1 CDS Riean_1280 NC_014738.1 1398049 1398234 R KEGG: tne:Tneu_1123 hypothetical protein; SPTR: Polysaccharide biosynthesis protein; hypothetical protein complement(1398049..1398234) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002042 YP_004045944.1 CDS Riean_1281 NC_014738.1 1398544 1399272 R COGs: COG2375 Siderophore-interacting protein; InterPro IPR017927: IPR008333; KEGG: fjo:Fjoh_4029 oxidoreductase FAD-binding subunit; PFAM: Oxidoreductase FAD-binding domain protein; SPTR: Putative iron transport/utilisation related protein; PFAM: Oxidoreductase FAD-binding domain; oxidoreductase faD-binding domain-containing protein complement(1398544..1399272) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002043 YP_004045945.1 CDS Riean_1282 NC_014738.1 1399574 1400281 R COGs: COG4912 DNA alkylation repair protein; InterPro IPR014825; KEGG: fba:FIC_00018 predicted DNA alkylation repair enzyme; PFAM: DNA alkylation repair enzyme; SPTR: Predicted DNA alkylation repair enzyme; PFAM: DNA alkylation repair enzyme; DNA alkylation repair protein complement(1399574..1400281) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002044 YP_004045946.1 CDS Riean_1283 NC_014738.1 1400326 1400724 D KEGG: fjo:Fjoh_0188 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1400326..1400724 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002045 YP_004045947.1 CDS Riean_1284 NC_014738.1 1400829 1403195 D COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR006121: IPR000531; KEGG: fba:FIC_00049 probable Co/Zn/Cd efflux system membrane fusion protein; PFAM: TonB-dependent receptor; SPTR: Probable Co/Zn/Cd efflux system membrane fusion protein; PFAM: TonB dependent receptor; Heavy-metal-associated domain; tonb-dependent receptor 1400829..1403195 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002046 YP_004045948.1 CDS Riean_1285 NC_014738.1 1403279 1406584 R KEGG: fba:FIC_02363 OmpA-related protein; SPTR: OmpA-related protein; ompa-related protein complement(1403279..1406584) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002047 YP_004045949.1 CDS Riean_1286 NC_014738.1 1406869 1409475 R InterPro IPR012910: IPR000531: IPR010917; KEGG: coc:Coch_1487 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor, plug; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; tonb-dependent receptor complement(1406869..1409475) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002048 YP_004045950.1 CDS Riean_1287 NC_014738.1 1409828 1410493 R COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: fba:FIC_02359 oxygen-insensitive NAD(P)H nitroreductase; PFAM: nitroreductase; SPTR: Oxygen-insensitive NAD(P)H nitroreductase; PFAM: Nitroreductase family; nitroreductase complement(1409828..1410493) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002049 YP_004045951.1 CDS Riean_1288 NC_014738.1 1410546 1412156 D COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: fba:FIC_02248 hypothetical protein; PFAM: surface antigen (D15); SPTR: Putative uncharacterized protein; surface antigen (d15) 1410546..1412156 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002050 YP_004045952.1 CDS Riean_1289 NC_014738.1 1412285 1413049 D InterPro IPR010902: IPR002711; KEGG: fps:FP0872 endonuclease; PFAM: NUMOD4 domain protein; HNH endonuclease; SPTR: Prophage LambdaSa2, HNH endonuclease family protein; PFAM: NUMOD4 motif; numod4 domain-containing protein 1412285..1413049 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002051 YP_004045953.1 CDS Riean_1290 NC_014738.1 1413115 1414335 R COGs: COG2262 GTPase; InterPro IPR016496: IPR005225: IPR006073: IPR002917; KEGG: fba:FIC_00017 GTP-binding protein HflX; PFAM: GTP-binding protein HSR1-related; SPTR: GTP-binding protein HflX-like protein; TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX; small GTP-binding protein domain; GTP-binding protein hflx complement(1413115..1414335) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002052 YP_004045954.1 CDS Riean_1291 NC_014738.1 1414352 1415539 R COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; InterPro IPR004506; KEGG: fba:FIC_02560 tRNA-specific 2-thiouridylase MnmA; SPTR: tRNA-specific 2-thiouridylase mnmA; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase complement(1414352..1415539) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002053 YP_004045955.1 CDS Riean_1292 NC_014738.1 1415686 1416222 D KEGG: fba:FIC_02559 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1415686..1416222 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002054 YP_004045956.1 CDS Riean_1293 NC_014738.1 1416318 1416569 D InterPro IPR007167; KEGG: fba:FIC_02531 hypothetical protein; PFAM: FeoA family protein; SPTR: Putative uncharacterized protein; PFAM: FeoA domain; feoa family protein 1416318..1416569 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002055 YP_004045957.1 CDS Riean_1294 NC_014738.1 1416605 1418641 D COGs: COG0370 Fe2+ transport system protein B; InterPro IPR005225: IPR003373: IPR006073: IPR002917: IPR 011619: IPR011642: IPR011640; KEGG: fba:FIC_02530 ferrous iron transport protein B; PFAM: Ferrous iron transport protein B domain-containing protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain-containing protein; SPTR: Ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain; ferrous iron transport protein b 1416605..1418641 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002056 YP_004045958.1 CDS Riean_1295 NC_014738.1 1418913 1419596 R COGs: COG2360 Leu/Phe-tRNA-protein transferase; InterPro IPR004616; KEGG: fba:FIC_02501 leucyl/phenylalanyl-tRNA--protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; PRIAM: Leucyltransferase; SPTR: Leucyl/phenylalanyl-tRNA--protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: Leucyl/phenylalanyl-tRNA protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA--protein transferase; leucyl/phenylalanyl-tRNA/protein transferase complement(1418913..1419596) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002057 YP_004045959.1 CDS Riean_1296 NC_014738.1 1419669 1420049 R KEGG: fba:FIC_02502 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3127); hypothetical protein complement(1419669..1420049) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002058 YP_004045960.1 CDS Riean_1297 NC_014738.1 1420689 1422311 D InterPro IPR005151; KEGG: fps:FP1003 hypothetical protein; PFAM: peptidase S41; SMART: peptidase S41; SPTR: Putative uncharacterized protein; PFAM: Peptidase family S41; peptidase s41 1420689..1422311 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002062 YP_004045961.1 CDS Riean_1298 NC_014738.1 1422561 1423808 R COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR001645: IPR013221: IPR022272: IPR018109; KEGG: fba:FIC_00042 dihydrofolate synthase; PFAM: Mur ligase middle domain protein; PRIAM: Tetrahydrofolate synthase; SPTR: Possible tetrahydrofolate synthase; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase; bifunctional folylpolyglutamate synthase/dihydrofolate synthase complement(1422561..1423808) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002065 YP_004045962.1 CDS Riean_1299 NC_014738.1 1423871 1425025 D KEGG: pmu:PM1082 hypothetical protein; SPTR: Uncharacterized protein PM1082; hypothetical protein 1423871..1425025 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002066 YP_004045963.1 CDS Riean_1300 NC_014738.1 1425248 1425715 D InterPro IPR020790: IPR003728; KEGG: fba:FIC_02321 hypothetical protein; PFAM: protein of unknown function DUF150; SPTR: Ribosome maturation factor rimP; PFAM: Uncharacterised BCR, YhbC family COG0779; hypothetical protein 1425248..1425715 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002067 YP_004045964.1 CDS Riean_1301 NC_014738.1 1425760 1426995 D COGs: COG0195 Transcription elongation factor; InterPro IPR010213: IPR013735; KEGG: fba:FIC_02320 transcription elongation factor NusA; PFAM: NusA domain-containing protein; SPTR: Transcription elongation factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA N-terminal domain; TIGRFAM: transcription termination factor NusA; nusa antitermination factor 1425760..1426995 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002068 YP_004045965.1 CDS Riean_1302 NC_014738.1 1427111 1429915 D COGs: COG0532 Translation initiation factor 2 (IF-2; GTPase); InterPro IPR000178: IPR005225: IPR006847: IPR000795: IPR 004161; KEGG: fba:FIC_02319 translation initiation factor IF-2; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain-containing protein; elongation factor Tu domain 2 protein; SPTR: Translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2; translation initiation factor 2 (bif-2) 1427111..1429915 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002069 YP_004045966.1 CDS Riean_1303 NC_014738.1 1430225 1433167 D InterPro IPR012910: IPR000531; KEGG: bvu:BVU_1847 hypothetical protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Probable outer membrane receptor protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; tonb-dependent receptor plug 1430225..1433167 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002070 YP_004045967.1 CDS Riean_1304 NC_014738.1 1433196 1434632 D InterPro IPR012944; KEGG: bvu:BVU_1853 hypothetical protein; PFAM: RagB/SusD domain protein; SPTR: Probable outer membrane protein; PFAM: SusD family; ragb/susd domain-containing protein 1433196..1434632 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002071 YP_004045968.1 CDS Riean_1305 NC_014738.1 1434740 1436641 D KEGG: fba:FIC_02312 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1434740..1436641 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002072 YP_004045969.1 CDS Riean_1306 NC_014738.1 1436651 1438231 D COGs: COG4365 conserved hypothetical protein; InterPro IPR011199; KEGG: fba:FIC_02311 hypothetical protein; PFAM: protein of unknown function UCP012535; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2317); hypothetical protein 1436651..1438231 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002073 YP_004045970.1 CDS Riean_1307 NC_014738.1 1438269 1440164 D InterPro IPR018392: IPR002482; KEGG: fba:FIC_02310 LysM-repeat protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: Possible LysM-repeat protein; PFAM: LysM domain; amino acid/amide ABC transporter substrate-binding protein, haat family 1438269..1440164 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002074 YP_004045971.1 CDS Riean_1308 NC_014738.1 1440208 1441083 D COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; InterPro IPR004410: IPR014043; KEGG: fba:FIC_02309 malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; SPTR: [acyl-carrier-protein] S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase 1440208..1441083 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002075 YP_004045972.1 CDS Riean_1309 NC_014738.1 1441161 1441460 R COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR017936: IPR006662: IPR013766; KEGG: fba:FIC_00092 thioredoxin C-2; PFAM: Thioredoxin domain-containing protein; SPTR: Possible thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin; thioredoxin complement(1441161..1441460) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002076 YP_004045973.1 CDS Riean_1310 NC_014738.1 1441466 1441777 R COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: fps:FP1814 rhodanese-like domain-containing protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Beta-lactamase-like protein; PFAM: Rhodanese-like domain; rhodanese domain-containing protein complement(1441466..1441777) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002077 YP_004045974.1 CDS Riean_1311 NC_014738.1 1441907 1442701 R KEGG: lla:L0252 subunit B of ATP-dependent exonuclease; SPTR: Putative uncharacterized protein; hypothetical protein complement(1441907..1442701) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002078 YP_004045975.1 CDS Riean_1312 NC_014738.1 1442698 1443111 R COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: pgi:PG1570 rhodanese-like domain-containing protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Rhodanese family domain protein; PFAM: Rhodanese-like domain; rhodanese domain-containing protein complement(1442698..1443111) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002079 YP_004045976.1 CDS Riean_1313 NC_014738.1 1443115 1444521 R COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: fba:FIC_00090 metallo-beta-lactamase superfamily protein; SMART: Rhodanese domain protein; SPTR: Metallo-beta-lactamase superfamily protein; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain; rhodanese domain-containing protein complement(1443115..1444521) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002080 YP_004045977.1 CDS Riean_1314 NC_014738.1 1444535 1445329 R InterPro IPR002781; KEGG: fba:FIC_00088 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: Conserved hypothetical transmembrane protein; PFAM: Sulfite exporter TauE/SafE; hypothetical protein complement(1444535..1445329) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002081 YP_004045978.1 CDS Riean_1315 NC_014738.1 1445402 1445845 R KEGG: zpr:ZPR_2598 transcription elongation factor; SPTR: Transcription elongation factor; hypothetical protein complement(1445402..1445845) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002082 YP_004045979.1 CDS Riean_1316 NC_014738.1 1445991 1447541 D COGs: COG0433 ATPase; InterPro IPR008571; KEGG: fba:FIC_00087 hypothetical protein; PFAM: protein of unknown function DUF853 NPT hydrolase; SPTR: ATPase; PFAM: Bacterial protein of unknown function (DUF853); hypothetical protein 1445991..1447541 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002083 YP_004045980.1 CDS Riean_1317 NC_014738.1 1447694 1448917 D COGs: COG2176 DNA polymerase III alpha subunit (gram-positive type); InterPro IPR006054: IPR013520: IPR006055; KEGG: fba:FIC_00086 DNA polymerase III epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; SPTR: DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family; DNA polymerase III subunit epsilon 1447694..1448917 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002084 YP_004045981.1 CDS Riean_1318 NC_014738.1 1448962 1450611 D COGs: COG0497 ATPase involved in DNA repair; InterPro IPR004604: IPR003395; KEGG: fba:FIC_00065 DNA repair protein RecN; PFAM: SMC domain protein; SPTR: DNA repair protein RecN; TIGRFAM: DNA repair protein RecN; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN; DNA replication and repair protein recn 1448962..1450611 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002085 YP_004045982.1 CDS Riean_1319 NC_014738.1 1450682 1451545 D InterPro IPR019115; KEGG: fba:FIC_02532 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; hypothetical protein 1450682..1451545 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002086 YP_004045983.1 CDS Riean_1320 NC_014738.1 1451562 1452182 R COGs: COG2928 conserved hypothetical protein; InterPro IPR007462; KEGG: fba:FIC_02449 hypothetical membrane protein; PFAM: protein of unknown function DUF502; SPTR: Hypothetical membrane protein; PFAM: Protein of unknown function (DUF502); hypothetical protein complement(1451562..1452182) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002087 YP_004045984.1 CDS Riean_1321 NC_014738.1 1452175 1453272 R COGs: COG0502 Biotin synthase; InterPro IPR002684: IPR007197: IPR010722: IPR006638; KEGG: cat:CA2559_02695 biotin synthase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; PRIAM: Biotin synthase; SMART: Elongator protein 3/MiaB/NifB; SPTR: Biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: biotin synthetase; biotin synthase complement(1452175..1453272) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002088 YP_004045985.1 CDS Riean_1322 NC_014738.1 1453451 1454308 D InterPro IPR019115; KEGG: fba:FIC_00050 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; hypothetical protein 1453451..1454308 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002089 YP_004045986.1 CDS Riean_1323 NC_014738.1 1454369 1455421 R COGs: COG0611 Thiamine monophosphate kinase; InterPro IPR006283: IPR000728; KEGG: fba:FIC_02443 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; PRIAM: Thiamine-phosphate kinase; SPTR: Thiamine-phosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein, N-terminal domain; TIGRFAM: thiamine-monophosphate kinase; thiamine-phosphate kinase complement(1454369..1455421) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002090 YP_004045987.1 CDS Riean_1324 NC_014738.1 1455437 1455934 R COGs: COG0824 thioesterase; KEGG: fba:FIC_02442 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Acyl-ACP thioesterase; hypothetical protein complement(1455437..1455934) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002091 YP_004045988.1 CDS Riean_1325 NC_014738.1 1456038 1457777 R KEGG: fba:FIC_01405 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1456038..1457777) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002092 YP_004045989.1 CDS Riean_1326 NC_014738.1 1457895 1458689 D KEGG: fba:FIC_02509 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2797); hypothetical protein 1457895..1458689 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002093 YP_004045990.1 CDS Riean_1327 NC_014738.1 1458846 1460279 D COGs: COG0621 2-methylthioadenine synthetase; InterPro IPR002792: IPR013848: IPR005839: IPR006463: IPR 007197: IPR006638: IPR020612; KEGG: fba:FIC_00080 (dimethylallyl)adenosine tRNA methylthiotransferase; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: tRNA 2-methylthioadenine synthetase; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family; tRNA-i(6)a37 thiotransferase enzyme miab 1458846..1460279 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002094 YP_004045991.1 CDS Riean_1328 NC_014738.1 1460308 1461582 D COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR002078: IPR020441: IPR002197: IPR003593; KEGG: fba:FIC_00079 transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; transcriptional regulator 1460308..1461582 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002095 YP_004045992.1 CDS Riean_1329 NC_014738.1 1461586 1462128 D KEGG: fba:FIC_00078 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1461586..1462128 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002096 YP_004045993.1 CDS Riean_1330 NC_014738.1 1462133 1463539 D KEGG: fba:FIC_00077 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1462133..1463539 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002097 YP_004045994.1 CDS Riean_1331 NC_014738.1 1463553 1463894 R InterPro IPR000100: IPR020539; KEGG: fjo:Fjoh_0970 ribonuclease P protein component; PFAM: ribonuclease P protein; SPTR: Ribonuclease P protein component; TIGRFAM: ribonuclease P protein component; PFAM: Ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial; ribonuclease p protein component complement(1463553..1463894) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002098 YP_004045995.1 CDS Riean_1332 NC_014738.1 1463891 1464619 R COGs: COG1179 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 1; InterPro IPR000594; KEGG: fba:FIC_00072 HesA/MoeB/ThiF family protein; PFAM: UBA/THIF-type NAD/FAD binding protein; SPTR: HesA/MoeB/ThiF family protein; PFAM: ThiF family; uba/thif-type nad/fad binding protein complement(1463891..1464619) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002099 YP_004045996.1 CDS Riean_1333 NC_014738.1 1464616 1465242 R COGs: COG0084 Mg-dependent DNase; InterPro IPR001130: IPR012278; KEGG: fba:FIC_00071 TatD-related deoxyribonuclease; PFAM: TatD-related deoxyribonuclease; SPTR: TatD deoxyribonuclease; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family; tatD-related deoxyribonuclease complement(1464616..1465242) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002100 YP_004045997.1 CDS Riean_1334 NC_014738.1 1465313 1465933 D InterPro IPR001647; KEGG: fba:FIC_00070 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: TetR family transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family; regulatory protein tetr 1465313..1465933 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002101 YP_004045998.1 CDS Riean_1335 NC_014738.1 1465993 1466466 R KEGG: fba:FIC_02375 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1465993..1466466) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002102 YP_004045999.1 CDS Riean_1336 NC_014738.1 1466515 1467246 R COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: fba:FIC_02374 hypothetical protein; PFAM: Conserved hypothetical protein CHP00730; SPTR: Rossmann fold nucleotide-binding protein; PFAM: Possible lysine decarboxylase; TIGRFAM: conserved hypothetical protein, DprA/Smf-related, family 1; conserved hypothetical protein, DprA/Smf-related, family 2; hypothetical protein complement(1466515..1467246) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002103 YP_004046000.1 CDS Riean_1337 NC_014738.1 1467243 1467956 R COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterPro IPR005835; KEGG: fba:FIC_02373 nucleotidyltransferase family protein; PFAM: Nucleotidyl transferase; SPTR: Nucleotidyltransferase family protein; PFAM: Nucleotidyl transferase; nucleotidyl transferase complement(1467243..1467956) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002104 YP_004046001.1 CDS Riean_1338 NC_014738.1 1467963 1469165 R COGs: COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; InterPro IPR005252: IPR003382: IPR007085; KEGG: fba:FIC_00067 phosphopantothenoylcysteine decarboxylase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; PRIAM: Phosphopantothenate--cysteine ligase; SPTR: Phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase complement(1467963..1469165) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002105 YP_004046002.1 CDS Riean_1339 NC_014738.1 1469277 1469600 R InterPro IPR006110; KEGG: fba:FIC_00068 hypothetical protein; PFAM: RNA polymerase Rpb6; SPTR: Putative uncharacterized protein; PFAM: RNA polymerase Rpb6; TIGRFAM: DNA-directed RNA polymerase, omega subunit; RNA polymerase rpb6 complement(1469277..1469600) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002106 YP_004046003.1 CDS Riean_1340 NC_014738.1 1469681 1470565 R COGs: COG4105 DNA uptake lipoprotein; InterPro IPR017689; KEGG: fba:FIC_00069 lipoprotein protein, putative; SPTR: Lipoprotein protein, putative; TIGRFAM: outer membrane assembly lipoprotein YfiO; TIGRFAM: outer membrane assembly lipoprotein YfiO; outer membrane assembly lipoprotein yfio complement(1469681..1470565) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002107 YP_004046004.1 CDS Riean_1341 NC_014738.1 1470727 1471758 D COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR008089: IPR001509; KEGG: fba:FIC_02510 UDP-N-acetylglucosamine 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase family protein; PFAM: NAD dependent epimerase/dehydratase family; naD-dependent epimerase/dehydratase 1470727..1471758 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002108 YP_004046005.1 CDS Riean_1342 NC_014738.1 1471852 1472073 D InterPro IPR021527; KEGG: fba:FIC_02511 hypothetical protein; PFAM: Protein of unknown function DUF2795; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2795); hypothetical protein 1471852..1472073 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002109 YP_004046006.1 CDS Riean_1343 NC_014738.1 1472180 1475251 D COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); InterPro IPR014018: IPR000185: IPR011115: IPR011130: IPR 001650: IPR011116: IPR020937; KEGG: fba:FIC_02512 preprotein translocase subunit SecA; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; helicase domain protein; SecA Wing and Scaffold; SPTR: Preprotein translocase subunit SecA; TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD-like domain; Helicase conserved C-terminal domain; SecA preprotein cross-linking domain; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit; protein translocase subunit seca 1472180..1475251 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002110 YP_004046007.1 CDS Riean_1344 NC_014738.1 1475339 1476226 R KEGG: bfr:BF3435 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1475339..1476226) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002111 YP_004046008.1 CDS Riean_1345 NC_014738.1 1476247 1478301 R COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910; KEGG: coc:Coch_1572 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; SPTR: Putative TonB dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; tonb-dependent receptor plug complement(1476247..1478301) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002112 YP_004046009.1 CDS Riean_1346 NC_014738.1 1479040 1480005 D COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600: IPR002731; KEGG: fba:FIC_02513 glucokinase; PFAM: ROK family protein; ATPase BadF/BadG/BcrA/BcrD type; SPTR: Glucokinase; PFAM: ROK family; TIGRFAM: ROK family protein (glucokinase); glucokinase 1479040..1480005 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002113 YP_004046010.1 CDS Riean_1347 NC_014738.1 1480150 1481457 D COGs: COG1160 GTPase; InterPro IPR005225: IPR016484: IPR002917; KEGG: fba:FIC_00664 GTP-binding protein EngA; PFAM: GTP-binding protein HSR1-related; SPTR: GTP-binding protein engA; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain; ribosome-associated GTPase enga 1480150..1481457 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002114 YP_004046011.1 CDS Riean_1348 NC_014738.1 1481618 1482643 D COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753; KEGG: fba:FIC_00099 rod shape-determining protein MreB; PFAM: cell shape determining protein MreB/Mrl; SPTR: Rod shape-determining protein mreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family; cell shape determining protein, mreb/mrl family 1481618..1482643 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002115 YP_004046012.1 CDS Riean_1349 NC_014738.1 1482667 1483521 D COGs: COG1792 Cell shape-determining protein; InterPro IPR007221; KEGG: fba:FIC_00100 rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; SPTR: Rod shape-determining protein mreC; PFAM: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; rod shape-determining protein mrec 1482667..1483521 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002116 YP_004046013.1 CDS Riean_1350 NC_014738.1 1483511 1484020 D InterPro IPR007227; KEGG: fba:FIC_00101 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD; rod shape-determining protein mred 1483511..1484020 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002117 YP_004046014.1 CDS Riean_1351 NC_014738.1 1484017 1486059 D COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311: IPR001460: IPR002137; KEGG: fba:FIC_00102 penicillin-binding protein 2 (PBP-2); PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Penicillin-binding protein 2 (PBP-2); PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2; peptidoglycan glycosyltransferase 1484017..1486059 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002118 YP_004046015.1 CDS Riean_1352 NC_014738.1 1486034 1487281 D COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: fba:FIC_00103 rod shape-determining protein RodA; PFAM: cell cycle protein; SPTR: Possible rod shape determining protein FtsW; PFAM: Cell cycle protein; cell cycle protein 1486034..1487281 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002119 YP_004046016.1 CDS Riean_1353 NC_014738.1 1487360 1488196 D COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: fba:FIC_00405 flagellar motor protein MotB; PFAM: OmpA/MotB domain protein; SPTR: Putative flagellar motor protein MotB; PFAM: OmpA family; ompa/motb domain-containing protein 1487360..1488196 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002120 YP_004046017.1 CDS Riean_1354 NC_014738.1 1488287 1488934 D COGs: COG4122 O-methyltransferase; InterPro IPR002935; KEGG: fba:FIC_00406 O-methyltransferase; PFAM: O-methyltransferase family 3; PRIAM: Caffeoyl-CoA O-methyltransferase; SPTR: Possible caffeoyl-CoA O-methyltransferase; PFAM: O-methyltransferase; caffeoyl-CoA o-methyltransferase 1488287..1488934 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002121 YP_004046018.1 CDS Riean_1355 NC_014738.1 1488939 1489652 D COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR013247: IPR000064; KEGG: fba:FIC_00407 NLP/P60 protein; PFAM: NLP/P60 protein; SH3 type 3 domain protein; SPTR: Possible cell wall-associated hydrolase lipoprotein; PFAM: NlpC/P60 family; Bacterial SH3 domain; nlp/p60 protein 1488939..1489652 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002122 YP_004046019.1 CDS Riean_1356 NC_014738.1 1489653 1490108 D InterPro IPR012867; KEGG: mba:Mbar_A3397 hypothetical protein; PFAM: protein of unknown function DUF1648; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1648); hypothetical protein 1489653..1490108 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002123 YP_004046020.1 CDS Riean_1357 NC_014738.1 1490111 1491340 D COGs: COG1519 3-deoxy-D-manno-octulosonic-acid transferase; InterPro IPR007507; KEGG: fba:FIC_00409 3-deoxy-D-manno-octulosonic-acid transferase; PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; SPTR: 3-deoxy-D-manno-octulosonic-acid transferase; PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein 1490111..1491340 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002124 YP_004046021.1 CDS Riean_1358 NC_014738.1 1491441 1493468 D COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910: IPR000531; KEGG: cpi:Cpin_0121 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; tonb-dependent receptor plug 1491441..1493468 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002125 YP_004046022.1 CDS Riean_1359 NC_014738.1 1493482 1493946 D KEGG: fjo:Fjoh_0927 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1493482..1493946 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002126 YP_004046023.1 CDS Riean_1360 NC_014738.1 1493938 1494264 R COGs: COG2388 acetyltransferase; InterPro IPR000182; KEGG: fba:FIC_02055 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Acetyltransferase (GNAT) family; hypothetical protein complement(1493938..1494264) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002127 YP_004046024.1 CDS Riean_1361 NC_014738.1 1494359 1494769 D InterPro IPR009474; KEGG: fba:FIC_02459 hypothetical protein; PFAM: protein of unknown function DUF1094; SPTR: Protein of hypothetical function DUF1094; PFAM: Protein of unknown function (DUF1094); hypothetical protein 1494359..1494769 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002128 YP_004046025.1 CDS Riean_1362 NC_014738.1 1494857 1495885 R COGs: COG0407 Uroporphyrinogen-III decarboxylase; InterPro IPR006361: IPR000257; KEGG: fba:FIC_00014 uroporphyrinogen III decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); PRIAM: Uroporphyrinogen decarboxylase; SPTR: Uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: uroporphyrinogen decarboxylase; uroporphyrinogen decarboxylase complement(1494857..1495885) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002129 YP_004046026.1 CDS Riean_1363 NC_014738.1 1495910 1496569 R COGs: COG1587 Uroporphyrinogen-III synthase; InterPro IPR003754; KEGG: fba:FIC_00013 uroporphyrinogen-III synthase; PFAM: Uroporphyrinogen III synthase HEM4; SPTR: Uroporphyrinogen-III synthase, divergent, Flavobacterial type; PFAM: Uroporphyrinogen-III synthase HemD; uroporphyrinogen iii synthase hem4 complement(1495910..1496569) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002130 YP_004046027.1 CDS Riean_1364 NC_014738.1 1496581 1497492 R COGs: COG0181 Porphobilinogen deaminase; InterPro IPR000860; KEGG: fba:FIC_00012 porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; SPTR: Hydroxymethylbilane synthase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase, C-terminal domain; Porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase; porphobilinogen deaminase complement(1496581..1497492) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002131 YP_004046028.1 CDS Riean_1365 NC_014738.1 1497476 1498771 R COGs: COG0373 Glutamyl-tRNA reductase; InterPro IPR000343: IPR015895: IPR006151: IPR018214; KEGG: fba:FIC_00011 glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; Shikimate/quinate 5-dehydrogenase; PRIAM: Glutamyl-tRNA reductase; SPTR: Glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Shikimate / quinate 5-dehydrogenase; Glutamyl-tRNAGlu reductase, N-terminal domain; Glutamyl-tRNAGlu reductase, dimerisation domain; TIGRFAM: glutamyl-tRNA reductase; glutamyl-tRNA reductase complement(1497476..1498771) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002132 YP_004046029.1 CDS Riean_1366 NC_014738.1 1499008 1499580 D InterPro IPR000595; KEGG: fba:FIC_00446 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; PFAM: cyclic nucleotide-binding; SPTR: cAMP-binding proteins-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; PFAM: Cyclic nucleotide-binding domain; cyclic nucleotide-binding protein 1499008..1499580 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002133 YP_004046030.1 CDS Riean_1367 NC_014738.1 1499749 1500249 D InterPro IPR013032; KEGG: pfd:PFDG_03496 conserved hypothetical protein; SPTR: Cob-I1; hypothetical protein 1499749..1500249 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002134 YP_004046031.1 CDS Riean_1368 NC_014738.1 1500308 1501120 D InterPro IPR019115; KEGG: fba:FIC_00050 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; hypothetical protein 1500308..1501120 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002135 YP_004046032.1 CDS Riean_1369 NC_014738.1 1501108 1501461 D KEGG: mif:Metin_1237 DNA helicase; SPTR: Putative uncharacterized protein; hypothetical protein 1501108..1501461 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002136 YP_004046033.1 CDS Riean_1370 NC_014738.1 1501502 1502566 R KEGG: fba:FIC_00385 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1501502..1502566) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002137 YP_004046034.1 CDS Riean_1371 NC_014738.1 1502711 1504966 R COGs: COG0306 Phosphate/sulphate permease; KEGG: cat:CA2559_01080 phosphate sodium symporter; SPTR: Phosphate sodium symporter; PFAM: Phosphate transporter family; phosphate sodium symporter complement(1502711..1504966) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002138 YP_004046035.1 CDS Riean_1372 NC_014738.1 1505133 1505405 R KEGG: fba:FIC_00060 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1505133..1505405) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002139 YP_004046036.1 CDS Riean_1373 NC_014738.1 1505494 1507101 R COGs: COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I N-terminal domain; InterPro IPR004647: IPR004646: IPR011167: IPR020557; KEGG: fjo:Fjoh_0881 tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; Fe-S type hydro-lyase tartrate/fumarate alpha region; SPTR: Fumarate hydratase; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fumarase C-terminus; Fumarate hydratase (Fumerase); TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region; fumarase complement(1505494..1507101) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002140 YP_004046037.1 CDS Riean_1374 NC_014738.1 1507232 1507561 R KEGG: fba:FIC_01958 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1507232..1507561) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002141 YP_004046038.1 CDS Riean_1375 NC_014738.1 1507641 1508900 R COGs: COG2195 Di- and tripeptidase; InterPro IPR010161: IPR002933: IPR011650: IPR001261; KEGG: smm:Smp_111420 peptidase T (M20 family); PFAM: peptidase dimerisation domain protein; peptidase M20; PRIAM: Tripeptide aminopeptidase; SPTR: Tripeptide aminopeptidase; TIGRFAM: peptidase T; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: peptidase T; peptidase t complement(1507641..1508900) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002142 YP_004046039.1 CDS Riean_1376 NC_014738.1 1509084 1509932 D COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891; KEGG: fba:FIC_00098 hydroxymethylglutaryl-CoA lyase; PFAM: pyruvate carboxyltransferase; PRIAM: Hydroxymethylglutaryl-CoA lyase; SPTR: Hydroxymethylglutaryl-CoA lyase like protein; PFAM: HMGL-like; hydroxymethylglutaryl-CoA lyase 1509084..1509932 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002143 YP_004046040.1 CDS Riean_1377 NC_014738.1 1510021 1511562 D COGs: COG0423 Glycyl-tRNA synthetase (class II); InterPro IPR006195: IPR002315: IPR002314: IPR004154; KEGG: fba:FIC_00031 glycyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; SPTR: Glycyl-tRNA synthetase; TIGRFAM: glycyl-tRNA synthetase; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: glycyl-tRNA synthetase, dimeric type; glycyl-tRNA synthetase 1510021..1511562 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002144 YP_004046041.1 CDS Riean_1378 NC_014738.1 1511671 1512891 D COGs: COG0520 Selenocysteine lyase; InterPro IPR010970: IPR000192: IPR020578; KEGG: fba:FIC_00032 cysteine desulfurase; PFAM: aminotransferase class V; SPTR: Cysteine desulfurase; TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily; cysteine desulfurase 1511671..1512891 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002145 YP_004046042.1 CDS Riean_1379 NC_014738.1 1512919 1513875 D KEGG: ddi:DDB_G0272670 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1512919..1513875 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002146 YP_004046043.1 CDS Riean_1380 NC_014738.1 1513960 1514445 R InterPro IPR005358; KEGG: fba:FIC_00022 hypothetical protein; PFAM: protein of unknown function UPF0153; SPTR: Fe-S-cluster oxidoreductase; PFAM: Uncharacterised protein family (UPF0153); hypothetical protein complement(1513960..1514445) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002147 YP_004046044.1 CDS Riean_1381 NC_014738.1 1514770 1516992 R COGs: COG0376 Catalase (peroxidase I); InterPro IPR002016: IPR000763: IPR019794; KEGG: cja:CJA_2891 catalase/peroxidase HPI; PFAM: Haem peroxidase; SPTR: Catalase-peroxidase 1; TIGRFAM: catalase/peroxidase HPI; PFAM: Peroxidase; TIGRFAM: catalase/peroxidase HPI; catalase/peroxidase hpi complement(1514770..1516992) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002148 YP_004046045.1 CDS Riean_1382 NC_014738.1 1517189 1517707 D InterPro IPR000182; KEGG: coc:Coch_0431 prolyl aminopeptidase; PFAM: GCN5-related N-acetyltransferase; SPTR: N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family; spermine/spermidine n-acetyltransferase 1517189..1517707 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002149 YP_004046046.1 CDS Riean_1383 NC_014738.1 1517711 1518484 R COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: fba:FIC_02037 rRNA methylase; PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: Putative rRNA methylase; PFAM: SpoU rRNA Methylase family; tRNA/rRNA methyltransferase (spou) complement(1517711..1518484) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002150 YP_004046047.1 CDS Riean_1384 NC_014738.1 1518491 1519978 R COGs: COG1322 conserved hypothetical protein; InterPro IPR003798; KEGG: fba:FIC_02036 DNA recombination protein RmuC; PFAM: protein of unknown function DUF195; SPTR: Possible DNA recombination protein RmuC; PFAM: RmuC family; hypothetical protein complement(1518491..1519978) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002151 YP_004046048.1 CDS Riean_1385 NC_014738.1 1520032 1521201 R COGs: COG1488 Nicotinic acid phosphoribosyltransferase; InterPro IPR006406: IPR015977: IPR007229; KEGG: fba:FIC_02033 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; SPTR: Nicotinate phosphoribosyltransferase; TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family; TIGRFAM: nicotinate phosphoribosyltransferase; nicotinate phosphoribosyltransferase complement(1520032..1521201) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002152 YP_004046049.1 CDS Riean_1386 NC_014738.1 1521313 1521789 R COGs: COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); InterPro IPR002177: IPR008331; KEGG: fba:FIC_02032 non-specific DNA-binding protein Dps / iron-binding ferritin-like antioxidant protein / ferroxidase; PFAM: Ferritin Dps family protein; SPTR: DDPS family NA-binding protein; PFAM: Ferritin-like domain; ferritin dps family protein complement(1521313..1521789) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002153 YP_004046050.1 CDS Riean_1387 NC_014738.1 1522343 1522831 D KEGG: npu:Npun_R5806 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1522343..1522831 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002154 YP_004046051.1 CDS Riean_1388 NC_014738.1 1523087 1524688 D KEGG: bvu:BVU_3793 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1523087..1524688 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002155 YP_004046052.1 CDS Riean_1389 NC_014738.1 1524702 1525187 D KEGG: cat:CA2559_08206 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1524702..1525187 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002156 YP_004046053.1 CDS Riean_1390 NC_014738.1 1525197 1526075 D KEGG: bvu:BVU_3796 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1525197..1526075 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002157 YP_004046054.1 CDS Riean_1391 NC_014738.1 1526081 1527010 D KEGG: bvu:BVU_3795 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1526081..1527010 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002158 YP_004046055.1 CDS Riean_1392 NC_014738.1 1527178 1527561 D COGs: COG0048 Ribosomal protein S12; InterPro IPR005679: IPR006032; KEGG: fba:FIC_02030 30S ribosomal protein S12; PFAM: ribosomal protein S12/S23; SPTR: 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12; PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle; 30S ribosomal protein S12 1527178..1527561 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002159 YP_004046056.1 CDS Riean_1393 NC_014738.1 1527587 1528063 D COGs: COG0049 Ribosomal protein S7; InterPro IPR005717: IPR000235: IPR020606; KEGG: fba:FIC_02029 30S ribosomal protein S7; PFAM: ribosomal protein S7; SPTR: 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle; 30S ribosomal protein S7 1527587..1528063 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002160 YP_004046057.1 CDS Riean_1394 NC_014738.1 1528070 1530187 D COGs: COG0480 Translation elongation factors (GTPase); InterPro IPR004540: IPR005225: IPR000795: IPR004161: IPR 005517: IPR000640; KEGG: fba:FIC_02028 elongation factor G; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein; SPTR: Elongation factor EF2; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain; translation elongation factor 2 (ef-2/ef-g) 1528070..1530187 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002161 YP_004046058.1 CDS Riean_1395 NC_014738.1 1530210 1530515 D COGs: COG0051 Ribosomal protein S10; InterPro IPR005731: IPR001848: IPR018268; KEGG: fba:FIC_02027 SSU ribosomal protein S10p (S20e); PFAM: ribosomal protein S10; SPTR: 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle; 30S ribosomal protein s10p 1530210..1530515 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002162 YP_004046059.1 CDS Riean_1396 NC_014738.1 1530643 1530774 D hypothetical protein 1530643..1530774 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002163 YP_004046060.1 CDS Riean_1397 NC_014738.1 1530764 1532125 D KEGG: pgn:PGN_2080 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1530764..1532125 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002164 YP_004046061.1 CDS Riean_1398 NC_014738.1 1532488 1532802 D KEGG: coc:Coch_1942 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1532488..1532802 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002165 YP_004046062.1 CDS Riean_1399 NC_014738.1 1532966 1533271 D KEGG: cya:CYA_1515 cytochrome oxidase assembly protein; SPTR: Putative uncharacterized protein; hypothetical protein 1532966..1533271 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002166 YP_004046063.1 CDS Riean_1400 NC_014738.1 1533255 1534106 D InterPro IPR019115; KEGG: pgn:PGN_1837 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; hypothetical protein 1533255..1534106 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002167 YP_004046064.1 CDS Riean_1401 NC_014738.1 1534277 1535098 D InterPro IPR019115; KEGG: fba:FIC_02022 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; hypothetical protein 1534277..1535098 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002168 YP_004046065.1 CDS Riean_1402 NC_014738.1 1535211 1535999 D InterPro IPR019115; KEGG: fba:FIC_01963 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; hypothetical protein 1535211..1535999 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002169 YP_004046066.1 CDS Riean_1403 NC_014738.1 1536102 1537325 D KEGG: fba:FIC_00296 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1536102..1537325 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002170 YP_004046067.1 CDS Riean_1404 NC_014738.1 1537334 1538095 R KEGG: cch:Cag_1572 hypothetical protein; SPTR: GDP-L-fucose synthase; hypothetical protein complement(1537334..1538095) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002171 YP_004046068.1 CDS Riean_1405 NC_014738.1 1538148 1539176 R COGs: COG0276 Protoheme ferro-lyase (ferrochelatase); InterPro IPR001015; KEGG: fba:FIC_00299 ferrochelatase, protoheme ferro-lyase; PFAM: ferrochelatase; PRIAM: Ferrochelatase; SPTR: Ferrochelatase; TIGRFAM: ferrochelatase; PFAM: Ferrochelatase; TIGRFAM: ferrochelatase; ferrochelatase complement(1538148..1539176) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002172 YP_004046069.1 CDS Riean_1406 NC_014738.1 1539202 1540080 R COGs: COG0694 Thioredoxin-like protein and domains; InterPro IPR014824: IPR001075; KEGG: fba:FIC_00300 NifU related protein; PFAM: nitrogen-fixing NifU domain protein; Scaffold protein Nfu/NifU; SPTR: NifU protein; PFAM: Scaffold protein Nfu/NifU N terminal; NifU-like domain; nitrogen-fixing nifu domain-containing protein complement(1539202..1540080) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002173 YP_004046070.1 CDS Riean_1407 NC_014738.1 1540214 1540741 D COGs: COG0663 Carbonic anhydrase/acetyltransferase isoleucine patch superfamily; InterPro IPR001451; KEGG: fba:FIC_00301 hexapeptide transferase family protein; SPTR: Acetyltransferase/carbonic anhydrase; hexapeptide transferase family protein 1540214..1540741 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002174 YP_004046071.1 CDS Riean_1408 NC_014738.1 1540728 1541270 D COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: lsp:Bsph_2373 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GNAT family acetyltransferase; PFAM: Acetyltransferase (GNAT) family; Gcn5-like N-acetyltransferase 1540728..1541270 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002175 YP_004046072.1 CDS Riean_1409 NC_014738.1 1541298 1543427 D COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; InterPro IPR003593; KEGG: fba:FIC_00303 helicase-related protein; SMART: AAA ATPase; SPTR: Helicase-related protein; PFAM: PIF1 helicase; AAA ATPase 1541298..1543427 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002176 YP_004046073.1 CDS Riean_1410 NC_014738.1 1543451 1544449 R COGs: COG3178 phosphotransferase related to Ser/Thr protein kinase; InterPro IPR002575; KEGG: fba:FIC_02370 hypothetical protein; PFAM: aminoglycoside phosphotransferase; SPTR: Putative uncharacterized protein; PFAM: Phosphotransferase enzyme family; aminoglycoside phosphotransferase complement(1543451..1544449) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002177 YP_004046074.1 CDS Riean_1411 NC_014738.1 1544483 1546126 R COGs: COG0815 Apolipoprotein N-acyltransferase; InterPro IPR003010: IPR004563; KEGG: fba:FIC_00304 apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Carbon-nitrogen hydrolase; TIGRFAM: apolipoprotein N-acyltransferase; apolipoprotein n-acyltransferase complement(1544483..1546126) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002178 YP_004046075.1 CDS Riean_1412 NC_014738.1 1546184 1546594 D InterPro IPR006976; KEGG: btl:BALH_4510 antibiotic resistance protein; PFAM: VanZ family protein; SPTR: Putative uncharacterized protein; PFAM: VanZ like family; vanz family protein 1546184..1546594 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002179 YP_004046076.1 CDS Riean_1413 NC_014738.1 1546584 1548389 R COGs: COG0322 Nuclease subunit of the excinuclease complex; InterPro IPR000305: IPR001162: IPR004791; KEGG: fba:FIC_00429 excinuclease ABC subunit C; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; SMART: Excinuclease ABC C subunit domain protein; SPTR: UvrABC system protein C; TIGRFAM: excinuclease ABC, C subunit; PFAM: UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit; excinuclease ABC, c subunit complement(1546584..1548389) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002180 YP_004046077.1 CDS Riean_1414 NC_014738.1 1548394 1549383 R COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: coc:Coch_0400 cation diffusion facilitator family transporter; PFAM: cation efflux protein; SPTR: Cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter; cation diffusion facilitator family transporter complement(1548394..1549383) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002181 YP_004046078.1 CDS Riean_1415 NC_014738.1 1549396 1549986 R COGs: COG0237 Dephospho-CoA kinase; InterPro IPR001977; KEGG: fba:FIC_02207 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; PRIAM: Dephospho-CoA kinase; SPTR: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; dephospho-CoA kinase complement(1549396..1549986) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002182 YP_004046079.1 CDS Riean_1416 NC_014738.1 1550002 1550868 R COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: fba:FIC_02208 beta-lactamase-like protein; SPTR: Metal dependent hydrolase; PFAM: Metallo-beta-lactamase superfamily; beta-lactamase-like protein complement(1550002..1550868) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002183 YP_004046080.1 CDS Riean_1417 NC_014738.1 1550905 1551927 R COGs: COG2255 Holliday junction resolvasome helicase subunit; InterPro IPR004605: IPR008824: IPR003959: IPR008823: IPR 003593; KEGG: fba:FIC_02212 Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; SMART: AAA ATPase; SPTR: Holliday junction ATP-dependent DNA helicase ruvB; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit; holliday junction DNA helicase ruvb complement(1550905..1551927) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002184 YP_004046081.1 CDS Riean_1418 NC_014738.1 1552089 1552595 R COGs: COG1528 Ferritin-like protein; InterPro IPR009040: IPR008331; KEGG: fba:FIC_00402 ferritin; PFAM: Ferritin Dps family protein; PRIAM: Ferroxidase; SPTR: Ferroxidase; PFAM: Ferritin-like domain; ferroxidase complement(1552089..1552595) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002185 YP_004046082.1 CDS Riean_1419 NC_014738.1 1552674 1553186 R COGs: COG2816 NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-aciD-binding; InterPro IPR000086; KEGG: fba:FIC_00164 hypothetical protein; PFAM: NUDIX hydrolase; SPTR: MutT/nudix family protein; PFAM: NUDIX domain; nudix hydrolase complement(1552674..1553186) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002186 YP_004046083.1 CDS Riean_1420 NC_014738.1 1553191 1554102 R COGs: COG4974 Site-specific recombinase XerD; InterPro IPR011932: IPR004107: IPR002104; KEGG: fba:FIC_00165 integrase; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: Integrase; TIGRFAM: tyrosine recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: tyrosine recombinase XerD; tyrosine recombinase xerd complement(1553191..1554102) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002187 YP_004046084.1 CDS Riean_1421 NC_014738.1 1554103 1554534 R COGs: COG2131 Deoxycytidylate deaminase; InterPro IPR002125: IPR016473: IPR016192; KEGG: fjo:Fjoh_0530 CMP/dCMP deaminase, zinc-binding; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: Competence protein ComEB; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; cmp/dcmp deaminase zinc-binding protein complement(1554103..1554534) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002188 YP_004046085.1 CDS Riean_1422 NC_014738.1 1554560 1555324 R COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753: IPR018376; KEGG: fba:FIC_00167 enoyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: 3-hydroxybutyryl-CoA dehydratase; PFAM: Enoyl-CoA hydratase/isomerase family; enoyl-CoA hydratase/isomerase complement(1554560..1555324) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002189 YP_004046086.1 CDS Riean_1423 NC_014738.1 1555337 1556488 R COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: mxa:MXAN_0697 aldo/keto reductase family oxidoreductase; PFAM: aldo/keto reductase; PRIAM: Pyridoxal 4-dehydrogenase; SPTR: Oxidoreductase, aldo/keto reductase family; PFAM: Aldo/keto reductase family; pyridoxal 4-dehydrogenase complement(1555337..1556488) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002190 YP_004046087.1 CDS Riean_1424 NC_014738.1 1556538 1558025 R COGs: COG0753 Catalase; InterPro IPR011614: IPR018028: IPR010582: IPR002226; KEGG: zpr:ZPR_3145 catalase; PFAM: Catalase related subgroup; Catalase domain protein; PRIAM: Catalase; SPTR: Catalase; PFAM: Catalase; Catalase-related immune-responsive; catalase complement(1556538..1558025) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002191 YP_004046088.1 CDS Riean_1425 NC_014738.1 1558169 1559119 D COGs: COG0583 Transcriptional regulator; InterPro IPR000847: IPR005119; KEGG: fba:FIC_00169 hydrogen peroxide-inducible genes activator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: Hydrogen peroxide-inducible genes activator; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; LysR family transcriptional regulator transcriptional regulator 1558169..1559119 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002192 YP_004046089.1 CDS Riean_1426 NC_014738.1 1559295 1560575 D COGs: COG0192 S-adenosylmethionine synthetase; InterPro IPR002133; KEGG: fba:FIC_00170 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; PRIAM: Methionine adenosyltransferase; SPTR: S-adenosylmethionine synthase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal domain; TIGRFAM: S-adenosylmethionine synthetase; methionine adenosyltransferase 1559295..1560575 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002193 YP_004046090.1 CDS Riean_1427 NC_014738.1 1560721 1561317 D COGs: COG0605 Superoxide dismutase; InterPro IPR001189: IPR019831: IPR019832: IPR019833; KEGG: fba:FIC_02380 manganese superoxide dismutase; PFAM: Manganese/iron superoxide dismutase-like; SPTR: Superoxide dismutase; PFAM: Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, C-terminal domain; manganese/iron superoxide dismutase 1560721..1561317 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002194 YP_004046091.1 CDS Riean_1428 NC_014738.1 1561437 1562342 D COGs: COG0781 Transcription termination factor; InterPro IPR006027; KEGG: fba:FIC_00207 transcription termination protein NusB; PFAM: NusB/RsmB/TIM44; SPTR: Transcription termination protein NusB; PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB; nusb antitermination factor 1561437..1562342 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002195 YP_004046092.1 CDS Riean_1429 NC_014738.1 1562354 1562845 D InterPro IPR011467; KEGG: fba:FIC_00208 hypothetical protein; PFAM: protein of unknown function DUF1573; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1573); hypothetical protein 1562354..1562845 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002196 YP_004046093.1 CDS Riean_1430 NC_014738.1 1562882 1563214 D COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: fba:FIC_00209 preprotein translocase subunit YajC; PFAM: YajC family protein; SPTR: Preprotein translocase subunit YajC; TIGRFAM: preprotein translocase, YajC subunit; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit; protein translocase subunit yajc 1562882..1563214 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002197 YP_004046094.1 CDS Riean_1431 NC_014738.1 1563261 1564049 D COGs: COG2966 conserved hypothetical protein; InterPro IPR010619; KEGG: coc:Coch_0908 protein of unknown function DUF1212; PFAM: protein of unknown function DUF1212; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1212); hypothetical protein 1563261..1564049 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002198 YP_004046095.1 CDS Riean_1432 NC_014738.1 1564039 1564578 D COGs: COG3610 conserved hypothetical protein; KEGG: coc:Coch_0907 conserved hypothetical protein-like protein; SPTR: Putative uncharacterized protein; hypothetical protein 1564039..1564578 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002199 YP_004046096.1 CDS Riean_1433 NC_014738.1 1564586 1565335 D COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002347: IPR002198: IPR020904; KEGG: fba:FIC_00007 oxidoreductase, short chain dehydrogenase/reductase family; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Serine 3-dehydrogenase; PFAM: short chain dehydrogenase; short-chain dehydrogenase/reductase sdr 1564586..1565335 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002200 YP_004046097.1 CDS Riean_1434 NC_014738.1 1565391 1566851 R COGs: COG0215 Cysteinyl-tRNA synthetase; InterPro IPR002308: IPR015803; KEGG: fba:FIC_00398 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; PRIAM: Cysteine--tRNA ligase; SPTR: Cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase; cysteinyl-tRNA synthetase complement(1565391..1566851) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002201 YP_004046098.1 CDS Riean_1435 NC_014738.1 1566879 1567544 R COGs: COG0302 GTP cyclohydrolase I; InterPro IPR001474: IPR020602: IPR018234; KEGG: fba:FIC_00397 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; PRIAM: GTP cyclohydrolase I; SPTR: GTP cyclohydrolase 1; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; GTP cyclohydrolase i complement(1566879..1567544) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002202 YP_004046099.1 CDS Riean_1436 NC_014738.1 1567668 1568777 R COGs: COG0562 UDP-galactopyranose mutase; InterPro IPR004379: IPR006076: IPR015899; KEGG: dfe:Dfer_3361 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like; FAD dependent oxidoreductase; PRIAM: UDP-galactopyranose mutase; SPTR: UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase; FAD dependent oxidoreductase; TIGRFAM: UDP-galactopyranose mutase; UDP-galactopyranose mutase complement(1567668..1568777) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002203 YP_004046100.1 CDS Riean_1437 NC_014738.1 1568844 1569845 D COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: fba:FIC_00364 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Glycosyltransferases involved in cell wall biogenesis; PFAM: Glycosyl transferase family 2; family 2 glycosyl transferase 1568844..1569845 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002204 YP_004046101.1 CDS Riean_1438 NC_014738.1 1569848 1570945 D InterPro IPR019974; KEGG: par:Psyc_1209 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1569848..1570945 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002205 YP_004046102.1 CDS Riean_1439 NC_014738.1 1570949 1571986 D COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: psa:PST_4158 sugar acetylase; PFAM: acyltransferase 3; SPTR: O-antigen acetylase; PFAM: Acyltransferase family; acyltransferase 3 1570949..1571986 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002206 YP_004046103.1 CDS Riean_1440 NC_014738.1 1571999 1572799 D COGs: COG3774 Mannosyltransferase OCH1; InterPro IPR007577; KEGG: fba:FIC_01726 mannosyltransferase involved in polysaccharide biosynthesis; PFAM: glycosyltransferase sugar-binding region containing DXD motif; SPTR: Putative mannosyltransferase involved in polysaccharide biosynthesis; PFAM: Glycosyltransferase sugar-binding region containing DXD motif; glycosyltransferase sugar-binding region containing dxd motif 1571999..1572799 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002207 YP_004046104.1 CDS Riean_1441 NC_014738.1 1572805 1573491 D InterPro IPR001509; KEGG: fph:Fphi_1263 hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase; SPTR: Putative uncharacterized protein; PFAM: NAD dependent epimerase/dehydratase family; naD-dependent epimerase/dehydratase 1572805..1573491 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002208 YP_004046105.1 CDS Riean_1442 NC_014738.1 1573479 1574495 R COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: fba:FIC_02333 LPS biosynthesis related glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Putative LPS biosynthesis related glycosyltransferase; PFAM: Glycosyl transferase family 2; family 2 glycosyl transferase complement(1573479..1574495) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002209 YP_004046106.1 CDS Riean_1443 NC_014738.1 1574558 1575085 D COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: fba:FIC_02334 exopolysaccharide biosynthesis protein, acetyltransferase; SPTR: Exopolysaccharide biosynthesis protein, acetyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats); exopolysaccharide biosynthesis acetyltransferase 1574558..1575085 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002210 YP_004046107.1 CDS Riean_1444 NC_014738.1 1575091 1576062 D COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: fba:FIC_02335 glycosyl transferase, family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase, family 2; PFAM: Glycosyl transferase family 2; family 2 glycosyl transferase 1575091..1576062 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002211 YP_004046108.1 CDS Riean_1445 NC_014738.1 1576075 1577097 D InterPro IPR001173; KEGG: fba:FIC_02336 hypothetical protein; PFAM: glycosyl transferase family 2; SPTR: Putative uncharacterized protein; PFAM: Glycosyl transferase family 2; family 2 glycosyl transferase 1576075..1577097 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002212 YP_004046109.1 CDS Riean_1446 NC_014738.1 1577220 1578179 R COGs: COG5039 Exopolysaccharide biosynthesis protein; KEGG: pdi:BDI_1412 exopolysaccharide biosynthesis protein, galactosyltransferase; SPTR: Exopolysaccharide biosynthesis protein, galactosyltransferase; PFAM: Polysaccharide pyruvyl transferase; exopolysaccharide biosynthesis galactosyltransferase complement(1577220..1578179) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002213 YP_004046110.1 CDS Riean_1447 NC_014738.1 1578295 1579728 D COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: gfo:GFO_3263 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 1578295..1579728 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002214 YP_004046111.1 CDS Riean_1448 NC_014738.1 1579810 1580826 D COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005835; KEGG: fba:FIC_00223 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; SPTR: Glucose-1-phosphate thymidylyltransferase; manually curated; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylylransferase, long form; nucleotidyl transferase 1579810..1580826 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002215 YP_004046112.1 CDS Riean_1449 NC_014738.1 1580883 1581683 D KEGG: fba:FIC_00222 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1580883..1581683 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002216 YP_004046113.1 CDS Riean_1450 NC_014738.1 1581680 1583233 D COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR016047; KEGG: fba:FIC_00221 peptidase M23B precursor; PFAM: Peptidase M23; SPTR: M24/M37 family peptidase; PFAM: Peptidase family M23; peptidase m23 1581680..1583233 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002217 YP_004046114.1 CDS Riean_1451 NC_014738.1 1583263 1583445 D InterPro IPR006312: IPR003369; KEGG: fba:FIC_00220 hypothetical protein; PFAM: sec-independent translocation protein mttA/Hcf106; SPTR: Tat family twin arginine targeting transporter TatA; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family; twin-arginine translocation protein, tata/e family subunit 1583263..1583445 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002218 YP_004046115.1 CDS Riean_1452 NC_014738.1 1583555 1583752 D InterPro IPR006312: IPR003369; KEGG: coc:Coch_0981 twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; SPTR: Putative uncharacterized protein; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family; twin-arginine translocation protein, tata/e family subunit 1583555..1583752 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002219 YP_004046116.1 CDS Riean_1453 NC_014738.1 1583777 1584388 D KEGG: fba:FIC_00219 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1583777..1584388 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002220 YP_004046117.1 CDS Riean_1454 NC_014738.1 1584381 1584851 D KEGG: fba:FIC_00218 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1584381..1584851 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002221 YP_004046118.1 CDS Riean_1455 NC_014738.1 1584866 1585459 D COGs: COG0807 GTP cyclohydrolase II; InterPro IPR000926; KEGG: fba:FIC_00217 GTP cyclohydrolase II; PFAM: GTP cyclohydrolase II; PRIAM: GTP cyclohydrolase II; SPTR: Possible GTP cyclohydrolase II; TIGRFAM: GTP cyclohydrolase II; PFAM: GTP cyclohydrolase II; TIGRFAM: GTP cyclohydrolase II; GTP cyclohydrolase ii 1584866..1585459 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002222 YP_004046119.1 CDS Riean_1456 NC_014738.1 1585586 1587319 D COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764: IPR019800; KEGG: fba:FIC_00213 glycoside hydrolase; PFAM: glycoside hydrolase family 3 domain protein; SPTR: Glycoside hydrolase; PFAM: Glycosyl hydrolase family 3 N terminal domain; glycoside hydrolase 1585586..1587319 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002223 YP_004046120.1 CDS Riean_1457 NC_014738.1 1587333 1588466 D COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: fba:FIC_00212 glycosyl transferase; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase; PFAM: Glycosyl transferases group 1; group 1 glycosyl transferase 1587333..1588466 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002224 YP_004046121.1 CDS Riean_1458 NC_014738.1 1588480 1589742 D KEGG: fba:FIC_00211 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2851); hypothetical protein 1588480..1589742 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002225 YP_004046122.1 CDS Riean_1459 NC_014738.1 1589750 1589971 D KEGG: fba:FIC_02301 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: PspC domain; hypothetical protein 1589750..1589971 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002226 YP_004046123.1 CDS Riean_1460 NC_014738.1 1589968 1590489 D InterPro IPR000182; KEGG: fba:FIC_02302 hypothetical protein; SPTR: Acetyltransferase, GNAT family protein; hypothetical protein 1589968..1590489 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002227 YP_004046124.1 CDS Riean_1461 NC_014738.1 1590650 1591708 R KEGG: fba:FIC_02124 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1590650..1591708) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002228 YP_004046125.1 CDS Riean_1462 NC_014738.1 1591698 1593176 R COGs: COG0738 Fucose permease; InterPro IPR001411: IPR011701; KEGG: fjo:Fjoh_4565 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily; major facilitator superfamily protein complement(1591698..1593176) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002229 YP_004046126.1 CDS Riean_1463 NC_014738.1 1593218 1593949 R COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: fba:FIC_02122 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; phospholipid/glycerol acyltransferase complement(1593218..1593949) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002230 YP_004046127.1 CDS Riean_1464 NC_014738.1 1593963 1594421 R InterPro IPR007267; KEGG: fba:FIC_02121 hypothetical protein; PFAM: GtrA family protein; SPTR: Putative uncharacterized protein; PFAM: GtrA-like protein; gtra family protein complement(1593963..1594421) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002231 YP_004046128.1 CDS Riean_1465 NC_014738.1 1594539 1596671 D InterPro IPR012910: IPR000531; KEGG: fps:FP1510 TonB-dependent outer membrane receptorprecursor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent outer membrane receptorprecursor; tonb-dependent receptor 1594539..1596671 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002232 YP_004046129.1 CDS Riean_1466 NC_014738.1 1596849 1597337 D KEGG: ava:Ava_0364 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1596849..1597337 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002233 YP_004046130.1 CDS Riean_1467 NC_014738.1 1597833 1598669 D InterPro IPR004221; KEGG: mar:MAE_08660 type II restriction enzyme EcoRI-like protein; PFAM: restriction endonuclease EcoRI; PRIAM: Type II site-specific deoxyribonuclease; SPTR: Type II restriction enzyme EcoRI homolog; PFAM: Restriction endonuclease EcoRI; type ii site-specific deoxyribonuclease 1597833..1598669 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002234 YP_004046131.1 CDS Riean_1468 NC_014738.1 1598680 1599699 D InterPro IPR002052; KEGG: mar:MAE_08670 type II restriction enzyme EcoRI-like protein; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Type II restriction enzyme EcoRI homolog; site-specific DNA-methyltransferase (adenine-specific) 1598680..1599699 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002235 YP_004046132.1 CDS Riean_1469 NC_014738.1 1599878 1600735 D COGs: COG2971 N-acetylglucosamine kinase; KEGG: fba:FIC_02254 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: BadF/BadG/BcrA/BcrD ATPase family; hypothetical protein 1599878..1600735 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002236 YP_004046133.1 CDS Riean_1470 NC_014738.1 1600758 1603046 D COGs: COG0281 Malic enzyme; InterPro IPR012301: IPR012302: IPR002505: IPR012188: IPR 015884; KEGG: fba:FIC_02253 NADP-dependent malic enzyme; PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; SPTR: NADP-dependent malic enzyme; PFAM: Phosphate acetyl/butaryl transferase; Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain; TIGRFAM: phosphate acetyltransferase; allosteric nADP-dependent malic enzyme 1600758..1603046 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002237 YP_004046134.1 CDS Riean_1471 NC_014738.1 1603134 1604528 R KEGG: fba:FIC_02297 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1603134..1604528) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002238 YP_004046135.1 CDS Riean_1472 NC_014738.1 1604583 1604873 R KEGG: fba:FIC_02298 conserved hypothetical protein; possible transcriptional regulator, MarR/EmrR family; SPTR: Possible transcriptional regulator; transcriptional regulator complement(1604583..1604873) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002239 YP_004046136.1 CDS Riean_1473 NC_014738.1 1604900 1605601 R KEGG: fba:FIC_02299 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1604900..1605601) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002240 YP_004046137.1 CDS Riean_1474 NC_014738.1 1605632 1607092 R COGs: COG0516 IMP dehydrogenase/GMP reductase; InterPro IPR000644: IPR005990: IPR001093: IPR018529: IPR 015875; KEGG: fba:FIC_00394 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; PRIAM: IMP dehydrogenase; SMART: CBS domain containing protein; SPTR: Inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase; inosine-5'-monophosphate dehydrogenase complement(1605632..1607092) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002241 YP_004046138.1 CDS Riean_1475 NC_014738.1 1607173 1609008 R COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003439: IPR017940: IPR001140: IPR003593: IPR 017871; KEGG: fba:FIC_02386 ABC transporter, ATP-binding protein, MsbA family; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: ABC transporter, ATP-binding protein, MsbA family; PFAM: ABC transporter transmembrane region; ABC transporter; ABC transporter complement(1607173..1609008) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002242 YP_004046139.1 CDS Riean_1476 NC_014738.1 1609142 1609534 R KEGG: fba:FIC_02384 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1609142..1609534) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002243 YP_004046140.1 CDS Riean_1477 NC_014738.1 1609718 1611412 D COGs: COG1158 Transcription termination factor; InterPro IPR004665: IPR011113: IPR000194: IPR011129: IPR 003593; KEGG: fba:FIC_02382 transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor RNA-binding; SMART: Cold shock protein; AAA ATPase; SPTR: Transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho; transcription termination factor rho 1609718..1611412 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002244 YP_004046141.1 CDS Riean_1478 NC_014738.1 1611541 1612047 D KEGG: fba:FIC_00171 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1611541..1612047 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002245 YP_004046142.1 CDS Riean_1479 NC_014738.1 1612035 1613240 R KEGG: cag:Cagg_0881 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1612035..1613240) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002246 YP_004046143.1 CDS Riean_1480 NC_014738.1 1613638 1614681 R COGs: COG4247 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase); InterPro IPR003431; KEGG: cpi:Cpin_1035 3-phytase; PFAM: phytase; PRIAM: 3-phytase; SPTR: Possible 3-phytase; PFAM: Phytase; 3-phytase complement(1613638..1614681) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002247 YP_004046144.1 CDS Riean_1481 NC_014738.1 1614708 1617518 R COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR010104: IPR012910: IPR000531; KEGG: fjo:Fjoh_1368 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Putative TonB-dependent outer membrane receptor protein; TIGRFAM: TonB-dependent receptor; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent receptor; tonb-dependent receptor complement(1614708..1617518) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002248 YP_004046145.1 CDS Riean_1482 NC_014738.1 1617696 1618448 R COGs: COG0052 Ribosomal protein S2; InterPro IPR005706: IPR001865: IPR018130; KEGG: fba:FIC_01962 SSU ribosomal protein S2p (SAe); PFAM: ribosomal protein S2; SPTR: 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type; 30S ribosomal protein S2 complement(1617696..1618448) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002249 YP_004046146.1 CDS Riean_1483 NC_014738.1 1618618 1619004 R COGs: COG0103 Ribosomal protein S9; InterPro IPR000754: IPR020574; KEGG: fba:FIC_01961 30S ribosomal protein S9; PFAM: ribosomal protein S9; SPTR: 30S ribosomal protein S9; PFAM: Ribosomal protein S9/S16; 30S ribosomal protein S9 complement(1618618..1619004) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002250 YP_004046147.1 CDS Riean_1484 NC_014738.1 1619008 1619463 R COGs: COG0102 Ribosomal protein L13; InterPro IPR005823: IPR005822; KEGG: fba:FIC_01960 LSU ribosomal protein L13p (L13Ae); PFAM: ribosomal protein L13; SPTR: 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type; 50S ribosomal protein L13 complement(1619008..1619463) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002251 YP_004046148.1 CDS Riean_1485 NC_014738.1 1619661 1619987 R COGs: COG2151 metal-sulfur cluster biosynthetic protein; InterPro IPR014291: IPR002744; KEGG: fba:FIC_00112 protein of unknown function DUF59; PFAM: protein of unknown function DUF59; SPTR: Putative uncharacterized protein; TIGRFAM: FeS assembly SUF system protein; PFAM: Domain of unknown function DUF59; TIGRFAM: FeS assembly SUF system protein; fes assembly suf system protein complement(1619661..1619987) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002252 YP_004046149.1 CDS Riean_1486 NC_014738.1 1620007 1620705 R InterPro IPR019288; KEGG: fba:FIC_00113 hypothetical protein; PFAM: 3'-5' exonuclease, PolB-like; SPTR: Polysaccharide biosynthesis protein; PFAM: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; 3'-5' exonuclease, polb complement(1620007..1620705) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002253 YP_004046150.1 CDS Riean_1487 NC_014738.1 1620709 1622112 R COGs: COG2715 Uncharacterized membrane protein required for spore maturation in B.subtilis.; InterPro IPR011642; KEGG: fba:FIC_02478 hypothetical protein; PFAM: nucleoside recognition domain protein; SPTR: Putative uncharacterized protein; PFAM: Nucleoside recognition; nucleoside recognition domain-containing protein complement(1620709..1622112) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002254 YP_004046151.1 CDS Riean_1488 NC_014738.1 1622273 1623583 D COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR017476: IPR001732: IPR014026: IPR014027; KEGG: fba:FIC_02322 UDP-glucose dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase; nucleotide sugar dehydrogenase 1622273..1623583 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002255 YP_004046152.1 CDS Riean_1489 NC_014738.1 1623594 1624331 R COGs: COG2836 conserved hypothetical protein; KEGG: fba:FIC_00141 heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis CycZ-like domain, possible membrane copper tolerance protein; SPTR: Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein; cytochrome biogenesis protein CycZ complement(1623594..1624331) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002256 YP_004046153.1 CDS Riean_1490 NC_014738.1 1624322 1624780 R KEGG: fba:FIC_00142 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: FixH; hypothetical protein complement(1624322..1624780) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002257 YP_004046154.1 CDS Riean_1491 NC_014738.1 1624781 1626223 R COGs: COG0348 Polyferredoxin; InterPro IPR017896: IPR014116: IPR017900; KEGG: fba:FIC_00143 type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation; SPTR: Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation; TIGRFAM: cytochrome c oxidase accessory protein CcoG; PFAM: Ubp3 associated protein Bre5; TIGRFAM: cytochrome c oxidase accessory protein FixG; cytochrome c oxidase accessory protein ccog complement(1624781..1626223) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002258 YP_004046155.1 CDS Riean_1492 NC_014738.1 1626251 1627129 R InterPro IPR009056: IPR003088; KEGG: fba:FIC_00144 cytochrome c oxidase subunit CcoP; PFAM: cytochrome c class I; SPTR: Cytochrome c oxidase subunit CcoP; PFAM: Cytochrome c; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; cytochrome c class i complement(1626251..1627129) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002259 YP_004046156.1 CDS Riean_1493 NC_014738.1 1627136 1627330 R KEGG: fba:FIC_00145 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Cbb3-type cytochrome oxidase component FixQ; hypothetical protein complement(1627136..1627330) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002260 YP_004046157.1 CDS Riean_1494 NC_014738.1 1627360 1629639 R COGs: COG3278 Cbb3-type cytochrome oxidase subunit 1; InterPro IPR000883: IPR009056: IPR004677: IPR003468; KEGG: fba:FIC_00146 cytochrome c oxidase subunit CcoN; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c oxidase subunit I; PRIAM: Cytochrome-c oxidase; SPTR: Cytochrome c oxidase subunit CcoN; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; cytochrome c oxidase, cbb3-type, subunit II; PFAM: Cytochrome C oxidase, mono-heme subunit/FixO; Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; cytochrome c oxidase, cbb3-type, subunit I; cytochrome c oxidase, cbb3-type, subunit i complement(1627360..1629639) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002261 YP_004046158.1 CDS Riean_1495 NC_014738.1 1629645 1629827 R InterPro IPR004714; KEGG: gfo:GFO_1432 cbb3-type cytochrome oxidase maturation protein; PFAM: cytochrome oxidase maturation protein cbb3-type; SPTR: Putative uncharacterized protein; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: Cytochrome oxidase maturation protein cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein complement(1629645..1629827) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002262 YP_004046159.1 CDS Riean_1496 NC_014738.1 1629943 1632336 R COGs: COG2217 Cation transport ATPase; InterPro IPR006121: IPR001757: IPR008250: IPR005834: IPR 018303: IPR017871; KEGG: fba:FIC_00148 type cbb3 cytochrome oxidase biogenesis protein CcoI; copper-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: Cu(I)-translocating P-type ATPase; PFAM: E1-E2 ATPase; Putative metal-binding domain of cation transport ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; e1-e2 ATPase-associated domain-containing protein complement(1629943..1632336) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002263 YP_004046160.1 CDS Riean_1497 NC_014738.1 1632426 1633139 D COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595: IPR012318: IPR001808; KEGG: fba:FIC_00149 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; SPTR: Transcriptional regulatory protein; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain; transcriptional regulator, crp/fnr family 1632426..1633139 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002264 YP_004046161.1 CDS Riean_1498 NC_014738.1 1633160 1633975 D COGs: COG0413 Ketopantoate hydroxymethyltransferase; InterPro IPR003700; KEGG: fba:FIC_00150 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; PRIAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; SPTR: 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; ketopantoate hydroxymethyltransferase 1633160..1633975 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002265 YP_004046162.1 CDS Riean_1499 NC_014738.1 1633985 1634296 D KEGG: fba:FIC_00151 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1633985..1634296 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002266 YP_004046163.1 CDS Riean_1500 NC_014738.1 1634306 1634995 D COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145; KEGG: fba:FIC_00163 ribosomal large subunit pseudouridine synthase D; PFAM: pseudouridine synthase; SPTR: Ribosomal large subunit pseudouridine synthase D; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family; ribosomal large subunit pseudouridine synthase d 1634306..1634995 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002267 YP_004046164.1 CDS Riean_1501 NC_014738.1 1635000 1636085 R InterPro IPR018486; KEGG: fba:FIC_00431 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1635000..1636085) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002268 YP_004046165.1 CDS Riean_1502 NC_014738.1 1636093 1636980 R InterPro IPR000620; KEGG: fba:FIC_00432 predicted permease; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Possible permease; PFAM: EamA-like transporter family; hypothetical protein complement(1636093..1636980) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002269 YP_004046166.1 CDS Riean_1503 NC_014738.1 1637114 1637311 D InterPro IPR001911; KEGG: fba:FIC_00265 SSU ribosomal protein S21p; PFAM: ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; 30S ribosomal protein s21p 1637114..1637311 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002270 YP_004046167.1 CDS Riean_1504 NC_014738.1 1637404 1638279 D COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107: IPR002104; KEGG: fba:FIC_00266 integrase, site-specific recombinase; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: Integrase/recombinase; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; integrase family protein 1637404..1638279 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002271 YP_004046168.1 CDS Riean_1505 NC_014738.1 1638307 1638597 D KEGG: fba:FIC_00267 ribosome hibernation protein YhbH; SPTR: Ribosome hibernation protein YhbH; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein; ribosome hibernation protein yhbh 1638307..1638597 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002272 YP_004046169.1 CDS Riean_1506 NC_014738.1 1639252 1640274 D COGs: COG0167 Dihydroorotate dehydrogenase; InterPro IPR005719: IPR012135: IPR001295; KEGG: fjo:Fjoh_2210 dihydroorotate dehydrogenase 2; PFAM: dihydroorotate oxidase; PRIAM: Dihydroorotate oxidase; SPTR: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase; PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase, subfamily 2; dihydroorotate dehydrogenase 1639252..1640274 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002277 YP_004046170.1 CDS Riean_1507 NC_014738.1 1640448 1641635 D COGs: COG0050 GTPase - translation elongation factors; InterPro IPR004541: IPR005225: IPR000795: IPR004161: IPR 004160; KEGG: fba:FIC_00272 translation elongation factor Tu; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein; SPTR: Elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: Elongation factor Tu C-terminal domain; Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU; translation elongation factor 1a (ef-1a/ef-tu) 1640448..1641635 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002278 YP_004046171.1 CDS Riean_1508 NC_014738.1 1641805 1642011 D InterPro IPR005807: IPR001901; KEGG: fba:FIC_00274 hypothetical protein; PFAM: protein secE/sec61-gamma protein; SPTR: Putative uncharacterized protein; TIGRFAM: preprotein translocase, SecE subunit; PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial; preprotein translocase subunit SecE 1641805..1642011 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002280 YP_004046172.1 CDS Riean_1509 NC_014738.1 1642031 1642573 D COGs: COG0250 Transcription antiterminator; InterPro IPR001062: IPR006645: IPR005824; KEGG: fba:FIC_00275 transcription antitermination protein NusG; PFAM: NGN domain-containing protein; KOW domain protein; SMART: NGN domain-containing protein; KOW domain protein; SPTR: Transcription antitermination protein nusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: Transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG; transcription antitermination protein nusg 1642031..1642573 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002281 YP_004046173.1 CDS Riean_1510 NC_014738.1 1642801 1643244 D COGs: COG0080 Ribosomal protein L11; InterPro IPR006519: IPR020784: IPR020783: IPR000911; KEGG: fba:FIC_00276 LSU ribosomal protein L11p (L12e); PFAM: Ribosomal protein L11-like; SMART: ribosomal protein L11; SPTR: 50S ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11; 50S ribosomal protein L11 1642801..1643244 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002282 YP_004046174.1 CDS Riean_1511 NC_014738.1 1643256 1643948 D COGs: COG0081 Ribosomal protein L1; InterPro IPR005878: IPR002143; KEGG: fba:FIC_00277 50S ribosomal protein L1; PFAM: ribosomal protein L1; SPTR: 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: Ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast; 50S ribosomal protein L1 1643256..1643948 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002283 YP_004046175.1 CDS Riean_1512 NC_014738.1 1643962 1644465 D COGs: COG0244 Ribosomal protein L10; InterPro IPR001790; KEGG: fba:FIC_00278 LSU ribosomal protein L10p (P0); PFAM: ribosomal protein L10; SPTR: LSU ribosomal protein L10p (P0); PFAM: Ribosomal protein L10; 50S ribosomal protein l10p 1643962..1644465 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002284 YP_004046176.1 CDS Riean_1513 NC_014738.1 1644539 1644907 D COGs: COG0222 Ribosomal protein L7/L12; InterPro IPR000206: IPR013823; KEGG: fba:FIC_00279 50S ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; SPTR: 50S ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12; 50S ribosomal protein l12p 1644539..1644907 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002285 YP_004046177.1 CDS Riean_1514 NC_014738.1 1645048 1646556 D InterPro IPR003367; KEGG: cat:CA2559_00005 transcriptional regulator, AraC family with parallel beta-helix repeat; PFAM: Thrombospondin type 3 repeat-containing protein; SPTR: Thrombospondin type 3 repeat family protein/Calx-beta domain protein; thrombospondin type 3 repeat-containing protein 1645048..1646556 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002286 YP_004046178.1 CDS Riean_1515 NC_014738.1 1646572 1647135 D KEGG: pjd:Pjdr2_5849 S-layer domain protein; SPTR: Putative uncharacterized protein; hypothetical protein 1646572..1647135 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002287 YP_004046179.1 CDS Riean_1516 NC_014738.1 1647203 1647727 D KEGG: pbe:PB102533.00.0 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1647203..1647727 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002288 YP_004046180.1 CDS Riean_1517 NC_014738.1 1647763 1650270 D InterPro IPR000169; KEGG: coc:Coch_1644 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1647763..1650270 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002289 YP_004046181.1 CDS Riean_1518 NC_014738.1 1650329 1650895 D KEGG: rno:497227 mucin apoprotein; SPTR: Putative uncharacterized protein; hypothetical protein 1650329..1650895 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002290 YP_004046182.1 CDS Riean_1519 NC_014738.1 1651265 1655092 D COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; InterPro IPR010243: IPR007644: IPR007642: IPR007645: IPR 019462: IPR007120: IPR007641: IPR007121; KEGG: fba:FIC_00280 DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2 domain 7; SPTR: DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit; DNA-directed RNA polymerase subunit beta 1651265..1655092 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002291 YP_004046183.1 CDS Riean_1520 NC_014738.1 1655175 1659443 D COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; InterPro IPR012754: IPR007080: IPR000722: IPR007066: IPR 007083: IPR007081: IPR006592; KEGG: fba:FIC_00281 DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 5; SMART: RNA polymerase I subunit A domain protein; SPTR: DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form; DNA-directed RNA polymerase subunit beta' 1655175..1659443 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002292 YP_004046184.1 CDS Riean_1521 NC_014738.1 1659526 1659834 D KEGG: fba:FIC_00282 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3467); hypothetical protein 1659526..1659834 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002293 YP_004046185.1 CDS Riean_1522 NC_014738.1 1659912 1662068 D COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: fba:FIC_00970 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent outer membrane receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; tonb-dependent receptor 1659912..1662068 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002294 YP_004046186.1 CDS Riean_1523 NC_014738.1 1662171 1664048 D COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439: IPR003593; KEGG: fba:FIC_01833 ABC superfamily ATP binding cassette transporter; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC superfamily ATP binding cassette transporter, ABC protein; PFAM: ABC transporter; ABC transporter 1662171..1664048 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002295 YP_004046187.1 CDS Riean_1524 NC_014738.1 1664106 1664675 D KEGG: cpi:Cpin_1613 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1664106..1664675 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002296 YP_004046188.1 CDS Riean_1525 NC_014738.1 1664821 1665471 D COGs: COG0035 Uracil phosphoribosyltransferase; InterPro IPR000836; KEGG: fba:FIC_00665 uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: Uracil phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: uracil phosphoribosyltransferase; uracil phosphoribosyltransferase 1664821..1665471 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002297 YP_004046189.1 CDS Riean_1526 NC_014738.1 1665576 1666376 D COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR018376: IPR001753; KEGG: fba:FIC_02219 enoyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: Enoyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase family; enoyl-CoA hydratase/isomerase 1665576..1666376 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002298 YP_004046190.1 CDS Riean_1527 NC_014738.1 1666412 1667272 D COGs: COG1561 Uncharacterized stress-induced protein; InterPro IPR013527: IPR013551; KEGG: fba:FIC_00309 hypothetical protein; PFAM: YicC-like domain-containing protein; domain of unknown function DUF1732; SPTR: Putative uncharacterized protein; PFAM: YicC-like family, N-terminal region; Domain of unknown function (DUF1732); TIGRFAM: conserved hypothetical protein TIGR00255; yicc-like domain-containing protein 1666412..1667272 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002299 YP_004046191.1 CDS Riean_1528 NC_014738.1 1667295 1667855 D COGs: COG0194 Guanylate kinase; InterPro IPR020590: IPR008144: IPR017665: IPR008145; KEGG: fba:FIC_00308 guanylate kinase; PFAM: guanylate kinase; PRIAM: Guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; SPTR: Guanylate kinase; TIGRFAM: guanylate kinase; PFAM: Guanylate kinase; TIGRFAM: guanylate kinase; guanylate kinase 1667295..1667855 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002300 YP_004046192.1 CDS Riean_1529 NC_014738.1 1667855 1668304 D KEGG: fba:FIC_00306 quinolinate synthetase; SPTR: Quinolinate synthetase; PFAM: Quinolinate synthetase A protein; hypothetical protein 1667855..1668304 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002301 YP_004046193.1 CDS Riean_1530 NC_014738.1 1668311 1668673 D COGs: COG1539 Dihydroneopterin aldolase; InterPro IPR006157: IPR006156; KEGG: fba:FIC_00305 dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase; SPTR: Dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; FolB domain; dihydroneopterin aldolase 1668311..1668673 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002302 YP_004046194.1 CDS Riean_1531 NC_014738.1 1668782 1669159 D COGs: COG0509 Glycine cleavage system H protein (lipoate-binding); InterPro IPR003016: IPR002930: IPR017453; KEGG: fba:FIC_02072 glycine cleavage system H protein; PFAM: glycine cleavage H-protein; SPTR: Glycine cleavage system protein H; TIGRFAM: glycine cleavage system H protein; PFAM: Glycine cleavage H-protein; TIGRFAM: glycine cleavage system H protein; glycine cleavage system h protein 1668782..1669159 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002303 YP_004046195.1 CDS Riean_1532 NC_014738.1 1669188 1669508 D KEGG: rmr:Rmar_0460 VanZ family protein; SPTR: Putative uncharacterized protein; PFAM: VanZ like family; hypothetical protein 1669188..1669508 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002304 YP_004046196.1 CDS Riean_1533 NC_014738.1 1669979 1670176 D KEGG: pop:POPTR_865607 hypothetical protein; SPTR: Predicted protein; hypothetical protein 1669979..1670176 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002305 YP_004046197.1 CDS Riean_1534 NC_014738.1 1670213 1670419 D KEGG: lbf:LBF_2285 ATP-dependent protease peptidase subunit; ATP-dependent protease peptidase subunit 1670213..1670419 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002306 YP_004046198.1 CDS Riean_1535 NC_014738.1 1670445 1670693 D KEGG: vvu:VV1_2299 ABC transporter ATP-binding protein; SPTR: Putative ATP-binding component of a transport system; hypothetical protein 1670445..1670693 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002307 YP_004046199.1 CDS Riean_1536 NC_014738.1 1670697 1672877 D KEGG: pyo:PY05054 rhoptry protein; SPTR: Putative uncharacterized protein; hypothetical protein 1670697..1672877 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002308 YP_004046200.1 CDS Riean_1537 NC_014738.1 1672962 1674008 D KEGG: ddf:DEFDS_1321 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1672962..1674008 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002309 YP_004046201.1 CDS Riean_1538 NC_014738.1 1674003 1674605 R KEGG: mlo:mll4674 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uracil DNA glycosylase superfamily; hypothetical protein complement(1674003..1674605) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002310 YP_004046202.1 CDS Riean_1539 NC_014738.1 1674725 1675438 D KEGG: fps:FP0822 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1674725..1675438 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002311 YP_004046203.1 CDS Riean_1540 NC_014738.1 1675457 1675981 D InterPro IPR001736; KEGG: fsu:Fisuc_1069 phospholipase D/transphosphatidylase; SPTR: Phospholipase domain-containing protein; phospholipase d/transphosphatidylase 1675457..1675981 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002312 YP_004046204.1 CDS Riean_1541 NC_014738.1 1676034 1676945 D KEGG: gfo:GFO_2571 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1676034..1676945 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002313 YP_004046205.1 CDS Riean_1542 NC_014738.1 1682878 1684995 R COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: fba:FIC_00159 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Probable TonB-dependent transmembrane receptor protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; tonb-dependent receptor complement(1682878..1684995) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002319 YP_004046206.1 CDS Riean_1543 NC_014738.1 1685243 1686712 R COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR000394: IPR007046: IPR007634; KEGG: fba:FIC_01828 RNA polymerase sigma-54 factor RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; SPTR: DNA-directed RNA polymerase sigma subunit SigL; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor; RNA polymerase, sigma 54 subunit, rpon/sigl complement(1685243..1686712) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002320 YP_004046207.1 CDS Riean_1544 NC_014738.1 1686715 1688163 R COGs: COG0017 Aspartyl/asparaginyl-tRNA synthetase; InterPro IPR002312: IPR004365: IPR004364: IPR006195: IPR 004522; KEGG: fba:FIC_01829 asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; PRIAM: Asparagine--tRNA ligase; SPTR: Asparagine--tRNA ligase; TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: asparaginyl-tRNA synthetase; asparaginyl-tRNA synthetase complement(1686715..1688163) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002321 YP_004046208.1 CDS Riean_1545 NC_014738.1 1688328 1689608 R COGs: COG0427 Acetyl-CoA hydrolase; InterPro IPR003702; KEGG: fba:FIC_00447 4-hydroxybutyrate coenzyme A transferase; PFAM: acetyl-CoA hydrolase/transferase; SPTR: 4-hydroxybutyrate coenzyme A transferase; PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain; acetyl-CoA hydrolase/transferase complement(1688328..1689608) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002322 YP_004046209.1 CDS Riean_1546 NC_014738.1 1689635 1690798 R COGs: COG3508 Homogentisate 1 2-dioxygenase; InterPro IPR005708; KEGG: fba:FIC_00449 homogentisate 1,2-dioxygenase; PFAM: homogentisate 12-dioxygenase; SPTR: Homogentisate 1,2-dioxygenase; PFAM: homogentisate 1,2-dioxygenase; homogentisate 12-dioxygenase complement(1689635..1690798) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002323 YP_004046210.1 CDS Riean_1547 NC_014738.1 1691475 1692161 D KEGG: nve:NEMVE_v1g225509 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1691475..1692161 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002324 YP_004046211.1 CDS Riean_1548 NC_014738.1 1692189 1693517 D InterPro IPR001304; KEGG: zpr:ZPR_2098 Hep_Hag family protein; SPTR: Putative uncharacterized protein; hypothetical protein 1692189..1693517 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002325 YP_004046212.1 CDS Riean_1549 NC_014738.1 1693539 1694258 D KEGG: bfs:BF0090 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1693539..1694258 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002326 YP_004046213.1 CDS Riean_1550 NC_014738.1 1697005 1697541 R KEGG: pgn:PGN_1622 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1697005..1697541) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002327 YP_004046214.1 CDS Riean_1551 NC_014738.1 1697548 1700835 R KEGG: pgn:PGN_1623 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1697548..1700835) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002328 YP_004046215.1 CDS Riean_1552 NC_014738.1 1700967 1702016 R COGs: COG0837 Glucokinase; InterPro IPR003836; KEGG: fba:FIC_01474 glucokinase; PFAM: Glucokinase; PRIAM: Glucokinase; SPTR: Glucokinase; PFAM: Glucokinase; TIGRFAM: glucokinase, proteobacterial type; glucokinase complement(1700967..1702016) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002329 YP_004046216.1 CDS Riean_1553 NC_014738.1 1702182 1704785 D COGs: COG0013 Alanyl-tRNA synthetase; InterPro IPR018164: IPR012947: IPR003156: IPR018165: IPR 002318; KEGG: fba:FIC_00507 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1; SPTR: Alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase; alanyl-tRNA synthetase 1702182..1704785 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002330 YP_004046217.1 CDS Riean_1554 NC_014738.1 1704881 1706248 R InterPro IPR015391: IPR000297; KEGG: fba:FIC_00458 PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: PPIC-type PPIASE domain; ppic-type peptidyl-prolyl cis-trans isomerase complement(1704881..1706248) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002331 YP_004046218.1 CDS Riean_1555 NC_014738.1 1706345 1707265 R COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR002173: IPR011611; KEGG: fba:FIC_00460 ribokinase; PFAM: PfkB domain protein; SPTR: PfkB family carbohydrate kinase; PFAM: pfkB family carbohydrate kinase; pfkb domain-containing protein complement(1706345..1707265) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002332 YP_004046219.1 CDS Riean_1556 NC_014738.1 1707291 1707854 R InterPro IPR019850; KEGG: fba:FIC_00461 GldD; SPTR: Gliding motility protein GldD family protein; TIGRFAM: gliding motility-associated lipoprotein GldD; TIGRFAM: gliding motility-associated lipoprotein GldD; gliding motility protein GldD complement(1707291..1707854) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002333 YP_004046220.1 CDS Riean_1557 NC_014738.1 1707899 1708939 R COGs: COG1194 A/G-specific DNA glycosylase; InterPro IPR003265: IPR003651: IPR005760; KEGG: fba:FIC_00462 A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; SMART: HhH-GPD family protein; iron-sulfur cluster loop; SPTR: Possible A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: A/G-specific adenine glycosylase; A/G-specific adenine glycosylase complement(1707899..1708939) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002334 YP_004046221.1 CDS Riean_1558 NC_014738.1 1708986 1709279 D COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: fba:FIC_00463 DNA-binding protein HU; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: DNA-binding protein HU-beta; PFAM: Bacterial DNA-binding protein; histone family protein DNA-binding protein 1708986..1709279 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002335 YP_004046222.1 CDS Riean_1559 NC_014738.1 1709503 1711062 D COGs: COG1530 Ribonuclease G and E; InterPro IPR003029: IPR019307: IPR004659; KEGG: fba:FIC_00464 cytoplasmic axial filament protein CafA and ribonuclease G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein; PRIAM: Ribonuclease E; SPTR: Bifunctional ribonuclease G/cytoplasmic axial filament protein; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family; ribonuclease, rne/rng family 1709503..1711062 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002336 YP_004046223.1 CDS Riean_1560 NC_014738.1 1711210 1713780 D InterPro IPR018087; KEGG: fjo:Fjoh_4670 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1711210..1713780 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002337 YP_004046224.1 CDS Riean_1561 NC_014738.1 1713801 1716872 D InterPro IPR012910: IPR000531; KEGG: fjo:Fjoh_4671 TonB-dependent receptor, plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; tonb-dependent receptor plug 1713801..1716872 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002338 YP_004046225.1 CDS Riean_1562 NC_014738.1 1716897 1718213 D InterPro IPR000276: IPR012944; KEGG: fjo:Fjoh_4672 RagB/SusD domain-containing protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family; ragb/susd domain-containing protein 1716897..1718213 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002339 YP_004046226.1 CDS Riean_1563 NC_014738.1 1718290 1718592 R KEGG: pkn:PKH_146920 DEAD/DEAH box helicase (fragment); SPTR: M protein; hypothetical protein complement(1718290..1718592) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002340 YP_004046227.1 CDS Riean_1564 NC_014738.1 1718582 1719640 R COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006224: IPR002942: IPR006145: IPR006225; KEGG: fba:FIC_00312 ribosomal large subunit pseudouridine synthase D; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: Pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase, RluA family; ribosomal large subunit pseudouridine synthase d complement(1718582..1719640) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002341 YP_004046228.1 CDS Riean_1565 NC_014738.1 1719703 1720737 R COGs: COG2815 conserved hypothetical protein; InterPro IPR005543; KEGG: fba:FIC_00311 hypothetical protein; PFAM: PASTA domain containing protein; SMART: PASTA domain containing protein; SPTR: Putative uncharacterized protein; PFAM: PASTA domain; pasta domain containing protein complement(1719703..1720737) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002342 YP_004046229.1 CDS Riean_1566 NC_014738.1 1720846 1723980 R COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR000212: IPR014016: IPR014017; KEGG: fba:FIC_00264 ATP-dependent helicase; PFAM: UvrD/REP helicase; SPTR: ATP-dependent helicase; PFAM: UvrD/REP helicase; uvrd/rep helicase complement(1720846..1723980) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002343 YP_004046230.1 CDS Riean_1567 NC_014738.1 1724106 1724930 D COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance; InterPro IPR005496; KEGG: fps:FP0722 TerC family membrane protein; PFAM: Integral membrane protein TerC; SPTR: Membrane protein, TerC family; PFAM: Integral membrane protein TerC family; integral membrane protein terc 1724106..1724930 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002344 YP_004046231.1 CDS Riean_1568 NC_014738.1 1725177 1726298 D COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase; InterPro IPR000422: IPR000926: IPR016299; KEGG: fba:FIC_00284 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; SPTR: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1725177..1726298 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002345 YP_004046232.1 CDS Riean_1569 NC_014738.1 1726724 1728052 D COGs: COG1257 Hydroxymethylglutaryl-CoA reductase; InterPro IPR002202: IPR004553; KEGG: fba:FIC_02280 hydroxymethylglutaryl-CoA reductase; PRIAM: Hydroxymethylglutaryl-CoA reductase; SPTR: Possible hydroxymethylglutaryl-CoA reductase (NADPH); TIGRFAM: hydroxymethylglutaryl-CoA reductase, degradative; PFAM: Hydroxymethylglutaryl-coenzyme A reductase; TIGRFAM: hydroxymethylglutaryl-CoA reductase, degradative; hydroxymethylglutaryl-CoA reductase, degradative 1726724..1728052 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002347 YP_004046233.1 CDS Riean_1570 NC_014738.1 1728060 1728449 D COGs: COG2363 Uncharacterized small membrane protein; InterPro IPR006696; KEGG: fba:FIC_02278 protein of hypothetical function DUF423; PFAM: protein of unknown function DUF423; SPTR: Protein of hypothetical function DUF423; PFAM: Protein of unknown function (DUF423); hypothetical protein 1728060..1728449 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002348 YP_004046234.1 CDS Riean_1571 NC_014738.1 1728535 1729725 D COGs: COG0045 Succinyl-CoA synthetase beta subunit; InterPro IPR017866: IPR013650: IPR005811: IPR011761: IPR 005809; KEGG: fba:FIC_02276 succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; PRIAM: Succinate--CoA ligase (ADP-forming); SPTR: Succinyl-CoA ligase [ADP-forming] subunit beta; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: CoA-ligase; ATP-grasp domain; TIGRFAM: succinyl-CoA synthetase, beta subunit; succinyl-CoA synthetase subunit beta 1728535..1729725 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002349 YP_004046235.1 CDS Riean_1572 NC_014738.1 1729821 1731068 R COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: fba:FIC_00154 penicillin-binding protein 4*; PFAM: beta-lactamase; SPTR: Beta-lactamase; PFAM: Beta-lactamase; beta-lactamase complement(1729821..1731068) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002350 YP_004046236.1 CDS Riean_1573 NC_014738.1 1731080 1732012 R COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139: IPR006140; KEGG: fba:FIC_00155 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; SPTR: D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; D-isomer specific 2-hydroxyacid dehydrogenase naD-binding protein complement(1731080..1732012) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002351 YP_004046237.1 CDS Riean_1574 NC_014738.1 1732019 1732528 R COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: fba:FIC_00156 acyl-CoA thioester hydrolase; PFAM: thioesterase superfamily protein; SPTR: Acyl-CoA thioester hydrolase; PFAM: Thioesterase superfamily; thioesterase superfamily protein complement(1732019..1732528) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002352 YP_004046238.1 CDS Riean_1575 NC_014738.1 1732530 1733210 R KEGG: fba:FIC_00157 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1732530..1733210) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002353 YP_004046239.1 CDS Riean_1576 NC_014738.1 1733304 1734461 R COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277; KEGG: fjo:Fjoh_1496 cystathionine gamma-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; SPTR: Possible methionine gamma-lyase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: O-succinylhomoserine sulfhydrylase; cys/met metabolism pyridoxal-phosphate-dependent protein complement(1733304..1734461) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002354 YP_004046240.1 CDS Riean_1577 NC_014738.1 1734474 1736012 R COGs: COG0460 Homoserine dehydrogenase; InterPro IPR019811: IPR005106: IPR001342; KEGG: zpr:ZPR_3623 aspartokinase I/homoserine dehydrogenase, threonine-sensitive; PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; PRIAM: Homoserine dehydrogenase; SPTR: Homoserine dehydrogenase; PFAM: Homoserine dehydrogenase; Homoserine dehydrogenase, NAD binding domain; homoserine dehydrogenase complement(1734474..1736012) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002355 YP_004046241.1 CDS Riean_1578 NC_014738.1 1736034 1736972 R COGs: COG2021 Homoserine acetyltransferase; InterPro IPR000073; KEGG: rbi:RB2501_03150 bifunctional aspartokinase I/homeserine dehydrogenase I; PFAM: alpha/beta hydrolase fold; PRIAM: Homoserine O-acetyltransferase; SPTR: Putative uncharacterized protein; PFAM: alpha/beta hydrolase fold; TIGRFAM: homoserine O-acetyltransferase; homoserine o-acetyltransferase complement(1736034..1736972) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002356 YP_004046242.1 CDS Riean_1579 NC_014738.1 1737274 1738257 D COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterPro IPR000291: IPR011127: IPR011095: IPR011761: IPR 005905; KEGG: fba:FIC_02185 D-alanyl-alanine synthetase A; PFAM: D-alanine--D-alanine ligase domain protein; PRIAM: D-alanine--D-alanine ligase; SPTR: D-alanine--D-alanine ligase; manually curated; PFAM: D-ala D-ala ligase C-terminus; D-ala D-ala ligase N-terminus; TIGRFAM: D-alanine--D-alanine ligase; D-alanine--D-alanine ligase 1737274..1738257 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002357 YP_004046243.1 CDS Riean_1580 NC_014738.1 1738264 1738722 D COGs: COG0669 Phosphopantetheine adenylyltransferase; InterPro IPR001980: IPR004820: IPR004821; KEGG: fba:FIC_02184 phosphopantetheine adenylyltransferase; PFAM: cytidylyltransferase; PRIAM: Pantetheine-phosphate adenylyltransferase; SPTR: Phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain; pantetheine-phosphate adenylyltransferase 1738264..1738722 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002358 YP_004046244.1 CDS Riean_1581 NC_014738.1 1738751 1739368 D COGs: COG2860 membrane protein; InterPro IPR005115; KEGG: fba:FIC_02183 YadS protein; PFAM: Uncharacterised protein family UPF0126; SPTR: YadS protein; PFAM: UPF0126 domain; hypothetical protein 1738751..1739368 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002359 YP_004046245.1 CDS Riean_1582 NC_014738.1 1739508 1740035 D KEGG: fba:FIC_01781 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Plasmid pRiA4b ORF-3-like protein; hypothetical protein 1739508..1740035 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002360 YP_004046246.1 CDS Riean_1583 NC_014738.1 1740142 1741371 R COGs: COG3876 conserved hypothetical protein; InterPro IPR008302; KEGG: fba:FIC_00719 YzbB; PFAM: Uncharacterised conserved protein UCP016719; SPTR: Probable lipoprotein; PFAM: Protein of unknown function (DUF1343); hypothetical protein complement(1740142..1741371) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002361 YP_004046247.1 CDS Riean_1584 NC_014738.1 1741377 1742606 D COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: fba:FIC_00718 ABC transporter, permease protein; PFAM: protein of unknown function DUF214; SPTR: ABC family transporter, permease protein; PFAM: Predicted permease; hypothetical protein 1741377..1742606 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002362 YP_004046248.1 CDS Riean_1585 NC_014738.1 1742654 1743484 D COGs: COG2264 Ribosomal protein L11 methylase; InterPro IPR010456: IPR004498; KEGG: fba:FIC_01645 ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; SPTR: Ribosomal protein L11 methyltransferase; PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase; (50S ribosomal protein l11p)-lysine n-methyltransferase 1742654..1743484 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002363 YP_004046249.1 CDS Riean_1586 NC_014738.1 1743518 1744528 D COGs: COG0240 Glycerol-3-phosphate dehydrogenase; InterPro IPR006168: IPR011128: IPR006109; KEGG: fba:FIC_01622 glycerol-3-phosphate dehydrogenase (NAD(P)+); PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; SPTR: Glycerol-3-phosphate dehydrogenase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein 1743518..1744528 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002364 YP_004046250.1 CDS Riean_1587 NC_014738.1 1744720 1745217 D InterPro IPR000182; KEGG: fjo:Fjoh_4884 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family; Gcn5-like N-acetyltransferase 1744720..1745217 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002365 YP_004046251.1 CDS Riean_1588 NC_014738.1 1745262 1745546 R COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: fba:FIC_01476 phage shock protein E; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Phage shock protein E; PFAM: Rhodanese-like domain; rhodanese domain-containing protein complement(1745262..1745546) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002366 YP_004046252.1 CDS Riean_1589 NC_014738.1 1745640 1746578 D COGs: COG1600 Uncharacterized Fe-S protein; InterPro IPR017900: IPR013542: IPR017896; KEGG: fba:FIC_01477 iron-sulfur cluster-binding protein; PFAM: domain of unknown function DUF1730; SPTR: Probable iron-sulfur cluster-binding protein; PFAM: Domain of unknown function (DUF1730); TIGRFAM: iron-sulfur cluster binding protein, putative; hypothetical protein 1745640..1746578 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002367 YP_004046253.1 CDS Riean_1590 NC_014738.1 1746811 1747488 D InterPro IPR011727; KEGG: fba:FIC_01478 hypothetical protein; PFAM: Conserved hypothetical protein CHP02117; SPTR: Probable urease-associated protein; PFAM: Protein of unknown function (DUF2459); TIGRFAM: conserved hypothetical protein; hypothetical protein 1746811..1747488 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002368 YP_004046254.1 CDS Riean_1591 NC_014738.1 1747492 1748322 R COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: fba:FIC_01621 peptidase M23B; PFAM: Peptidase M23; SPTR: Peptidase M23B; PFAM: Peptidase family M23; peptidase m23 complement(1747492..1748322) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002369 YP_004046255.1 CDS Riean_1592 NC_014738.1 1748528 1749223 D KEGG: fps:FP2138 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1748528..1749223 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002370 YP_004046256.1 CDS Riean_1593 NC_014738.1 1749248 1749982 D InterPro IPR008271; KEGG: cpi:Cpin_6432 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1749248..1749982 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002371 YP_004046257.1 CDS Riean_1594 NC_014738.1 1749995 1751947 D KEGG: chu:CHU_2139 CHU large protein, SAP or adhesin AidA-related; SPTR: Putative uncharacterized protein; hypothetical protein 1749995..1751947 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002372 YP_004046258.1 CDS Riean_1595 NC_014738.1 1751947 1761084 D COGs: COG3209 Rhs family protein; InterPro IPR006530; KEGG: hoh:Hoch_2925 YD repeat protein; SPTR: Putative uncharacterized protein; TIGRFAM: YD repeat protein; PFAM: Insecticide toxin TcdB middle/N-terminal region; Salmonella virulence plasmid 65kDa B protein; RHS Repeat; TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies); yd repeat protein 1751947..1761084 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002373 YP_004046259.1 CDS Riean_1596 NC_014738.1 1761093 1761350 D KEGG: tet:TTHERM_01132880 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1761093..1761350 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002374 YP_004046260.1 CDS Riean_1597 NC_014738.1 1761491 1762189 D COGs: COG1662 Transposase and inactivated derivatives IS1 family; InterPro IPR003220: IPR005063; KEGG: fjo:Fjoh_3693 IS1 transposase; PFAM: IS1 transposase; Insertion element protein; SPTR: IS1 transposase; PFAM: IS1 transposase; Insertion element protein; is1 transposase 1761491..1762189 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002375 YP_004046261.1 CDS Riean_1598 NC_014738.1 1762199 1762396 D SPTR: Putative uncharacterized protein; hypothetical protein 1762199..1762396 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002376 YP_004046262.1 CDS Riean_1599 NC_014738.1 1762798 1767609 R InterPro IPR003593; KEGG: zpr:ZPR_2096 ATPase; SMART: AAA ATPase; SPTR: ATPase involved in DNA repair; PFAM: ATPase family associated with various cellular activities (AAA); ATPase involved in DNA repair; AAA ATPase complement(1762798..1767609) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002377 YP_004046263.1 CDS Riean_1600 NC_014738.1 1767705 1769717 R COGs: COG2268 conserved hypothetical protein; InterPro IPR001107; KEGG: zpr:ZPR_2095 SPFH domain / band 7 family protein; PFAM: band 7 protein; SPTR: Band 7 protein; hypothetical protein complement(1767705..1769717) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002378 YP_004046264.1 CDS Riean_1601 NC_014738.1 1769769 1770422 R KEGG: gfo:GFO_2639 membrane protein; SPTR: Putative uncharacterized protein; membrane protein complement(1769769..1770422) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002379 YP_004046265.1 CDS Riean_1602 NC_014738.1 1770429 1771130 R COGs: COG1842 Phage shock protein A (IM30) suppresses sigma54-dependent transcription; InterPro IPR007157; KEGG: gfo:GFO_2640 PspA/IM30 family protein; PFAM: PspA/IM30 family protein; SPTR: Phage shock protein A, PspA; PFAM: PspA/IM30 family; phage shock protein a, pspa complement(1770429..1771130) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002380 YP_004046266.1 CDS Riean_1603 NC_014738.1 1771207 1771608 R KEGG: gfo:GFO_2641 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1771207..1771608) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002381 YP_004046267.1 CDS Riean_1604 NC_014738.1 1771724 1772320 D InterPro IPR001387; KEGG: zpr:ZPR_2091 prophage LambdaCh01, repressor protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein 1771724..1772320 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002382 YP_004046268.1 CDS Riean_1605 NC_014738.1 1772317 1774326 R COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); InterPro IPR018239: IPR013839: IPR004150: IPR004149: IPR 000445: IPR001357: IPR001679: IPR013840: IPR003583; KEGG: fba:FIC_01384 DNA ligase; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; helix-hairpin-helix motif; BRCT domain protein; PRIAM: DNA ligase (NAD(+)); SMART: NAD-dependent DNA ligase; Helix-hairpin-helix DNA-binding class 1; BRCT domain protein; SPTR: DNA ligase (NAD(+)); TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; BRCA1 C Terminus (BRCT) domain; NAD-dependent DNA ligase C4 zinc finger domain; TIGRFAM: DNA ligase, NAD-dependent; DNA ligase, naD-dependent complement(1772317..1774326) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002383 YP_004046269.1 CDS Riean_1606 NC_014738.1 1774495 1774662 D KEGG: lwe:lwe2245 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1774495..1774662 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002384 YP_004046270.1 CDS Riean_1607 NC_014738.1 1775363 1778104 D COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910: IPR000531; KEGG: gfo:GFO_2521 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor, plug; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; tonb-dependent receptor 1775363..1778104 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002385 YP_004046271.1 CDS Riean_1608 NC_014738.1 1778287 1779687 D COGs: COG3104 Dipeptide/tripeptide permease; InterPro IPR018456: IPR000109: IPR005279; KEGG: coc:Coch_1058 amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; SPTR: Amino acid/peptide transporter; TIGRFAM: amino acid/peptide transporter; PFAM: POT family; TIGRFAM: amino acid/peptide transporter (Peptide:H+ symporter), bacterial; amino acid/peptide transporter 1778287..1779687 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002386 YP_004046272.1 CDS Riean_1609 NC_014738.1 1779797 1780333 D InterPro IPR017937: IPR013766: IPR017936; KEGG: fba:FIC_01454 hypothetical protein; PFAM: Thioredoxin domain-containing protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF255; thioredoxin domain-containing protein 1779797..1780333 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002387 YP_004046273.1 CDS Riean_1610 NC_014738.1 1780832 1782085 D InterPro IPR010870; KEGG: gfo:GFO_3192 phosphate-selective porin O and P; PFAM: phosphate-selective porin O and P; SPTR: Phosphate-selective porin O and P; PFAM: Phosphate-selective porin O and P; phosphate-selective porin o and p 1780832..1782085 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002388 YP_004046274.1 CDS Riean_1611 NC_014738.1 1782105 1782590 D InterPro IPR001887: IPR000026; KEGG: fba:FIC_01787 ribonuclease; PFAM: guanine-specific ribonuclease N1 and T1; SPTR: Probable ribonuclease; PFAM: ribonuclease; guanine-specific ribonuclease n1 and t1 1782105..1782590 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002389 YP_004046275.1 CDS Riean_1612 NC_014738.1 1782656 1783225 R KEGG: fba:FIC_02182 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1782656..1783225) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002390 YP_004046276.1 CDS Riean_1613 NC_014738.1 1783297 1783884 R KEGG: fba:FIC_00688 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3109); hypothetical protein complement(1783297..1783884) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002391 YP_004046277.1 CDS Riean_1614 NC_014738.1 1783881 1784801 R KEGG: fba:FIC_00689 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1783881..1784801) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002392 YP_004046278.1 CDS Riean_1615 NC_014738.1 1784845 1785078 D KEGG: fba:FIC_00690 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1784845..1785078 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002393 YP_004046279.1 CDS Riean_1616 NC_014738.1 1785250 1787235 D COGs: COG3158 K+ transporter; InterPro IPR003855; KEGG: fba:FIC_00698 Kup system potassium uptake protein; PFAM: K potassium transporter; SPTR: KUP family potassium (K+) uptake permease; PFAM: K+ potassium transporter; potassium transporter 1785250..1787235 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002394 YP_004046280.1 CDS Riean_1617 NC_014738.1 1787262 1787729 D COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: fba:FIC_00699 ferric uptake regulation protein FUR; PFAM: ferric-uptake regulator; SPTR: Ferric uptake regulation protein; PFAM: Ferric uptake regulator family; ferric uptake regulator, fur family 1787262..1787729 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002395 YP_004046281.1 CDS Riean_1618 NC_014738.1 1787729 1789480 D InterPro IPR005653; KEGG: fba:FIC_00700 hypothetical protein; PFAM: OstA family protein; SPTR: Putative uncharacterized protein; PFAM: OstA-like protein; osta family protein 1787729..1789480 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002396 YP_004046282.1 CDS Riean_1619 NC_014738.1 1789509 1790690 D COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814; KEGG: fba:FIC_00701 aminotransferase class-III; PFAM: aminotransferase class-III; SPTR: Acetylornithine aminotransferase; PFAM: Aminotransferase class-III; aminotransferase class-iii 1789509..1790690 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002397 YP_004046283.1 CDS Riean_1620 NC_014738.1 1791001 1791564 D KEGG: fba:FIC_00641 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1791001..1791564 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002398 YP_004046284.1 CDS Riean_1621 NC_014738.1 1791670 1792404 D KEGG: cho:Chro.30043 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1791670..1792404 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002399 YP_004046285.1 CDS Riean_1622 NC_014738.1 1792574 1793896 R COGs: COG1524 Uncharacterized protein of the AP superfamily; InterPro IPR002591; KEGG: ilo:IL2398 phosphodiesterase-nucleotide pyrophosphatase-like protein; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; PRIAM: Phosphodiesterase I; SPTR: Phosphodiesterase I; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase; phosphodiesterase i complement(1792574..1793896) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002400 YP_004046286.1 CDS Riean_1623 NC_014738.1 1793941 1794732 R COGs: COG0171 NAD synthase; InterPro IPR003694; KEGG: fba:FIC_01788 NAD synthetase; SPTR: NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; TIGRFAM: NAD+ synthetase; nad+ synthetase complement(1793941..1794732) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002401 YP_004046287.1 CDS Riean_1624 NC_014738.1 1794848 1795816 D KEGG: fba:FIC_01789 GldB; SPTR: Putative uncharacterized protein; gliding motility protein gldb 1794848..1795816 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002402 YP_004046288.1 CDS Riean_1625 NC_014738.1 1795847 1796173 D InterPro IPR019854; KEGG: fba:FIC_01790 gliding motility protein GldC; SPTR: Gliding motility protein GldC; TIGRFAM: gliding motility-associated protein GldC; TIGRFAM: gliding motility-associated protein GldC; gliding motility protein GldC 1795847..1796173 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002403 YP_004046289.1 CDS Riean_1626 NC_014738.1 1796194 1796742 D COGs: COG0009 Putative translation factor (SUA5); InterPro IPR006070: IPR004388; KEGG: fba:FIC_01795 SUA5 YciO YrdC YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SPTR: Possible translation factor, Sua5; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; translation factor sua5 1796194..1796742 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002404 YP_004046290.1 CDS Riean_1628 NC_014738.1 1797527 1798366 D COGs: COG1045 Serine acetyltransferase; InterPro IPR001451; KEGG: coc:Coch_1821 serine O-acetyltransferase; PRIAM: Serine O-acetyltransferase; SPTR: Serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase; serine o-acetyltransferase 1797527..1798366 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002406 YP_004046291.1 CDS Riean_1629 NC_014738.1 1798400 1799311 D COGs: COG0031 Cysteine synthase; InterPro IPR010916: IPR001216: IPR001926: IPR005856: IPR 005859; KEGG: coc:Coch_1822 cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: Cysteine synthase; TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthase A; cysteine synthases; cysteine synthase 1798400..1799311 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002407 YP_004046292.1 CDS Riean_1630 NC_014738.1 1799462 1800283 R COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR002563; KEGG: fba:FIC_00441 hypothetical protein; PFAM: flavin reductase domain protein FMN-binding; SPTR: Putative uncharacterized protein; PFAM: Flavin reductase like domain; flavin reductase domain-containing protein fmn-binding protein complement(1799462..1800283) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002408 YP_004046293.1 CDS Riean_1631 NC_014738.1 1800316 1800813 R InterPro IPR002625; KEGG: fba:FIC_00320 DNA mismatch repair protein; PFAM: Smr protein/MutS2; SPTR: Probable DNA mismatch repair protein; PFAM: Smr domain; smr protein/muts2 complement(1800316..1800813) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002409 YP_004046294.1 CDS Riean_1632 NC_014738.1 1800810 1801304 R COGs: COG0622 phosphoesterase; InterPro IPR004843: IPR000979; KEGG: fba:FIC_02076 hypothetical protein; PFAM: metallophosphoesterase; SPTR: Putative uncharacterized protein; TIGRFAM: phosphodiesterase, MJ0936 family; TIGRFAM: phosphoesterase, MJ0936 family; phosphodiesterase, mj0936 family complement(1800810..1801304) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002410 YP_004046295.1 CDS Riean_1633 NC_014738.1 1801391 1802131 D COGs: COG0101 Pseudouridylate synthase; InterPro IPR020097: IPR001406; KEGG: fba:FIC_02075 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; SPTR: tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I; tRNA pseudouridine synthase a 1801391..1802131 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002411 YP_004046296.1 CDS Riean_1634 NC_014738.1 1802153 1803904 D COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR017871: IPR001140: IPR003439: IPR017940: IPR 003593; KEGG: fba:FIC_02074 ABC-type transporter ATP-binding and permease co mponent; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: ABC-type transporter ATP-binding and permease co mponent; PFAM: ABC transporter transmembrane region; ABC transporter; ABC transporter 1802153..1803904 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002412 YP_004046297.1 CDS Riean_1635 NC_014738.1 1803941 1804633 D COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR015218: IPR003593; KEGG: fba:FIC_00573 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Gliding motility-associated ABC transporter ATP-binding subunit; PFAM: ABC transporter; gliding motility protein glda 1803941..1804633 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002413 YP_004046298.1 CDS Riean_1636 NC_014738.1 1804680 1805690 R COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; InterPro IPR004188: IPR002319: IPR006195: IPR004529; KEGG: fba:FIC_01565 phenylalanyl-tRNA synthetase subunit alpha; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; SPTR: Phenylalanyl-tRNA synthetase subunit alpha; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; phenylalanyl-tRNA synthetase subunit alpha complement(1804680..1805690) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002414 YP_004046299.1 CDS Riean_1637 NC_014738.1 1805777 1806283 R KEGG: fba:FIC_00118 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1805777..1806283) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002415 YP_004046300.1 CDS Riean_1638 NC_014738.1 1806322 1807443 R COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR007197: IPR010723: IPR004559: IPR006638; KEGG: fba:FIC_00314 hypothetical radical SAM family enzyme, NOT coproporphyrinogen III oxidase, oxygen-independent; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Possible coproporphyrinogen dehydrogenase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; oxygen-independent coproporphyrinogen iii oxidase complement(1806322..1807443) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002416 YP_004046301.1 CDS Riean_1639 NC_014738.1 1807464 1808411 R InterPro IPR019861; KEGG: fba:FIC_00313 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein; membrane protein complement(1807464..1808411) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002417 YP_004046302.1 CDS Riean_1640 NC_014738.1 1808430 1809278 R COGs: COG0414 Panthothenate synthetase; InterPro IPR003721; KEGG: fba:FIC_00484 pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; SPTR: Pantothenate synthetase; TIGRFAM: pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; pantothenate synthetase complement(1808430..1809278) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002418 YP_004046303.1 CDS Riean_1641 NC_014738.1 1809392 1810165 D COGs: COG0297 Glycogen synthase; InterPro IPR013534; KEGG: fba:FIC_00485 glycogen synthase-like protein; PFAM: Starch synthase catalytic domain-containing protein; PRIAM: Starch synthase; SPTR: Glycogen synthase; PFAM: Starch synthase catalytic domain; starch synthase 1809392..1810165 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002419 YP_004046304.1 CDS Riean_1642 NC_014738.1 1810192 1811697 D KEGG: fba:FIC_00486 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1810192..1811697 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002420 YP_004046305.1 CDS Riean_1643 NC_014738.1 1811703 1813556 D COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; InterPro IPR000583: IPR001347: IPR017932: IPR005855; KEGG: fba:FIC_00487 glucosamine--fructose-6-phosphate aminotransferase (isomerizing); PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; SPTR: Glutamine--fructose-6-phosphate transaminase (Isomerizing); TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: SIS domain; Glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing); glutamine--fructose-6-phosphate transaminase 1811703..1813556 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002421 YP_004046306.1 CDS Riean_1644 NC_014738.1 1813727 1815139 D COGs: COG1262 conserved hypothetical protein; InterPro IPR005532: IPR019866; KEGG: fba:FIC_00488 GldJ; PFAM: protein of unknown function DUF323; SPTR: GldJ; TIGRFAM: gliding motility-associated lipoprotein GldK; PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: gliding motility-associated lipoprotein GldK; gliding motility protein gldk 1813727..1815139 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002422 YP_004046307.1 CDS Riean_1645 NC_014738.1 1815172 1815858 D InterPro IPR019852; KEGG: fba:FIC_00489 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: gliding motility-associated protein GldL; TIGRFAM: gliding motility-associated protein GldL; gliding motility protein gldl 1815172..1815858 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002423 YP_004046308.1 CDS Riean_1646 NC_014738.1 1815909 1817468 D InterPro IPR019859; KEGG: fba:FIC_00490 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: gliding motility-associated protein GldM; PFAM: GldM C-terminal domain; GldM N-terminal domain; TIGRFAM: gliding motility-associated protein GldM; gliding motility protein gldm 1815909..1817468 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002424 YP_004046309.1 CDS Riean_1647 NC_014738.1 1817524 1818438 D InterPro IPR019847; KEGG: fba:FIC_00491 GldN; SPTR: GldN; TIGRFAM: gliding motility associated protien GldN; TIGRFAM: gliding motility associated protien GldN; gliding motility protein gldn 1817524..1818438 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002425 YP_004046310.1 CDS Riean_1648 NC_014738.1 1818525 1819571 D COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: fba:FIC_00492 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Oxidoreductase; PFAM: FAD dependent oxidoreductase; fad dependent oxidoreductase 1818525..1819571 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002426 YP_004046311.1 CDS Riean_1649 NC_014738.1 1819645 1820862 R KEGG: fba:FIC_01785 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1819645..1820862) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002427 YP_004046312.1 CDS Riean_1650 NC_014738.1 1820900 1823512 R COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: fba:FIC_01784 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; tonb-dependent receptor complement(1820900..1823512) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002428 YP_004046313.1 CDS Riean_1651 NC_014738.1 1823716 1824393 D COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a wingeD-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: fba:FIC_01783 phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; SPTR: DNA-binding response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; winged helix family two component transcriptional regulator 1823716..1824393 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002429 YP_004046314.1 CDS Riean_1652 NC_014738.1 1824401 1825423 D COGs: COG5002 Signal transduction histidine kinase; InterPro IPR004358: IPR003661: IPR003594: IPR005467; KEGG: fba:FIC_01782 two-component system sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Two-component system sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; integral membrane sensor signal transduction histidine kinase 1824401..1825423 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002430 YP_004046315.1 CDS Riean_1653 NC_014738.1 1825506 1826165 D COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: fba:FIC_01685 rhodanese-like domain protein; PFAM: YceI family protein; SPTR: Rhodanese-like domain protein; PFAM: YceI-like domain; ycei family protein 1825506..1826165 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002431 YP_004046316.1 CDS Riean_1654 NC_014738.1 1826219 1829578 R COGs: COG1197 Transcription-repair coupling factor (superfamily II helicase); InterPro IPR009849: IPR003711: IPR011545: IPR001650: IPR 005118: IPR014021: IPR004576: IPR014001; KEGG: fba:FIC_02346 transcription-repair coupling factor; PFAM: DEAD/DEAH box helicase domain protein; transcription factor CarD; protein of unknown function DUF1410; helicase domain protein; TRCF domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Transcription-repair coupling factor helicase; TIGRFAM: transcription-repair coupling factor; PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd); transcription-repair coupling factor complement(1826219..1829578) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002432 YP_004046317.1 CDS Riean_1655 NC_014738.1 1829777 1830190 D COGs: COG0816 endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); InterPro IPR005227: IPR006641; KEGG: fba:FIC_01697 Holliday junction resolvase; PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; SPTR: Putative Holliday junction resolvase; PFAM: Uncharacterised protein family (UPF0081); TIGRFAM: RNAse H-fold protein YqgF; holliday junction resolvase yqgf 1829777..1830190 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002433 YP_004046318.1 CDS Riean_1656 NC_014738.1 1830187 1830759 D COGs: COG0242 N-formylmethionyl-tRNA deformylase; InterPro IPR000181; KEGG: fba:FIC_01698 peptide deformylase; PFAM: formylmethionine deformylase; PRIAM: Peptide deformylase; SPTR: Peptide deformylase; TIGRFAM: peptide deformylase; PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase; peptide deformylase 1830187..1830759 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002434 YP_004046319.1 CDS Riean_1657 NC_014738.1 1830787 1831209 D KEGG: fba:FIC_01699 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1830787..1831209 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002435 YP_004046320.1 CDS Riean_1658 NC_014738.1 1831749 1832522 D COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; InterPro IPR021115: IPR004518: IPR011551; KEGG: fba:FIC_01700 nucleoside triphosphate pyrophosphohydrolase; PFAM: MazG nucleotide pyrophosphohydrolase; SPTR: MazG family protein; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein; mazg family protein 1831749..1832522 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002436 YP_004046321.1 CDS Riean_1659 NC_014738.1 1832553 1833299 D COGs: COG0169 Shikimate 5-dehydrogenase; InterPro IPR013708: IPR006151; KEGG: fba:FIC_01652 shikimate 5-dehydrogenase I alpha; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; SPTR: Possible shikimate dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain; TIGRFAM: shikimate 5-dehydrogenase; shikimate dehydrogenase substrate binding domain-containing protein 1832553..1833299 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002437 YP_004046322.1 CDS Riean_1660 NC_014738.1 1833379 1835193 D InterPro IPR007139; KEGG: fba:FIC_01653 hypothetical protein; PFAM: protein of unknown function DUF349; SPTR: Putative uncharacterized protein; PFAM: Domain of Unknown Function (DUF349); hypothetical protein 1833379..1835193 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002438 YP_004046323.1 CDS Riean_1661 NC_014738.1 1835288 1836307 D COGs: COG0117 Pyrimidine deaminase; InterPro IPR016192: IPR002125: IPR002734: IPR004794; KEGG: fba:FIC_01655 diaminohydroxyphosphoribosylaminopyrimidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; SPTR: Diaminohydroxyphosphoribosylaminopyrimidine deaminase; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD; riboflavin biosynthesis protein ribd 1835288..1836307 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002439 YP_004046324.1 CDS Riean_1662 NC_014738.1 1836313 1837950 D KEGG: fba:FIC_00288 cytoplasmic membrane protein; SPTR: Cytoplasmic membrane protein; cytoplasmic membrane protein 1836313..1837950 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002440 YP_004046325.1 CDS Riean_1663 NC_014738.1 1837976 1839520 R COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR013973; KEGG: fba:FIC_01918 response regulator; PFAM: response regulator receiver; PglZ domain protein; SMART: response regulator receiver; SPTR: Two-component response transcriptional regulator; PFAM: PglZ domain; Response regulator receiver domain; response regulator receiver protein complement(1837976..1839520) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002441 YP_004046326.1 CDS Riean_1664 NC_014738.1 1839670 1840545 R COGs: COG1741 Pirin-related protein; InterPro IPR003829: IPR008778: IPR012093; KEGG: gfo:GFO_1139 pirin family protein; PFAM: Pirin domain protein; SPTR: Pirin family protein; PFAM: Pirin C-terminal cupin domain; Pirin; pirin domain-containing protein complement(1839670..1840545) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002442 YP_004046327.1 CDS Riean_1665 NC_014738.1 1840694 1841194 D COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: cat:CA2559_08291 RNA polymerase ECF-type sigma factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase, sigma-24 subunit, ecf subfamily 1840694..1841194 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002443 YP_004046328.1 CDS Riean_1666 NC_014738.1 1841209 1841994 D KEGG: tet:TTHERM_00647160 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1841209..1841994 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002444 YP_004046329.1 CDS Riean_1667 NC_014738.1 1841989 1842675 R COGs: COG0775 Nucleoside phosphorylase; InterPro IPR000845: IPR010049; KEGG: coc:Coch_2188 adenosylhomocysteine nucleosidase; PFAM: purine or other phosphorylase family 1; PRIAM: Adenosylhomocysteine nucleosidase; SPTR: MTA/SAH nucleosidase; TIGRFAM: MTA/SAH nucleosidase; PFAM: Phosphorylase superfamily; TIGRFAM: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; methylthioadenosine nucleosidase complement(1841989..1842675) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002445 YP_004046330.1 CDS Riean_1668 NC_014738.1 1842738 1843226 R COGs: COG4574 Serine protease inhibitor ecotin; InterPro IPR005658; KEGG: kva:Kvar_1425 proteinase inhibitor I11 ecotin; PFAM: proteinase inhibitor I11 ecotin; SPTR: Proteinase inhibitor I11 ecotin; PFAM: Ecotin; proteinase inhibitor i11 ecotin complement(1842738..1843226) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002446 YP_004046331.1 CDS Riean_1669 NC_014738.1 1843342 1844109 R KEGG: fba:FIC_02112 nitrous oxide reductase maturation transmembrane protein NosY; SPTR: Nitrous oxide reductase maturation transmembrane protein NosY; nitrous oxide reductase maturation transmembrane protein nosy complement(1843342..1844109) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002447 YP_004046332.1 CDS Riean_1670 NC_014738.1 1844102 1844815 R COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: fba:FIC_02111 ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Putative ABC transporter; PFAM: ABC transporter; ABC transporter complement(1844102..1844815) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002448 YP_004046333.1 CDS Riean_1671 NC_014738.1 1844831 1846075 R COGs: COG3420 Nitrous oxidase accessory protein; InterPro IPR006626; KEGG: fba:FIC_02110 nitrous oxide reductase maturation protein NosD; SPTR: Nitrous oxide reductase maturation protein NosD; PFAM: Periplasmic copper-binding protein (NosD); TIGRFAM: parallel beta-helix repeat (two copies); nitrous oxide reductase maturation protein nosd complement(1844831..1846075) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002449 YP_004046334.1 CDS Riean_1672 NC_014738.1 1846114 1846527 R KEGG: fba:FIC_02109 lipoprotein, putative; SPTR: Lipoprotein, putative; PFAM: NosL; lipoprotein complement(1846114..1846527) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002450 YP_004046335.1 CDS Riean_1673 NC_014738.1 1846533 1847114 R KEGG: fba:FIC_02108 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1846533..1847114) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002451 YP_004046336.1 CDS Riean_1674 NC_014738.1 1847182 1849188 R COGs: COG4263 Nitrous oxide reductase; InterPro IPR001505: IPR002429; KEGG: fba:FIC_02107 nitrous-oxide reductase; PFAM: cytochrome c oxidase subunit II; PRIAM: Nitrous-oxide reductase; SPTR: Nitrous-oxide reductase; PFAM: Cytochrome C oxidase subunit II, periplasmic domain; nitrous oxide reductase apoprotein complement(1847182..1849188) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002452 YP_004046337.1 CDS Riean_1675 NC_014738.1 1849201 1849695 R InterPro IPR009056; KEGG: fba:FIC_02106 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Cytochrome c; hypothetical protein complement(1849201..1849695) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002453 YP_004046338.1 CDS Riean_1676 NC_014738.1 1849829 1850227 D COGs: COG4654 Cytochrome c551/c552; InterPro IPR002324: IPR003088: IPR009056; KEGG: fba:FIC_02105 cytochrome c551/c552; PFAM: cytochrome c class I; SPTR: Cytochrome c551/c552; PFAM: Cytochrome c; cytochrome c class i 1849829..1850227 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002454 YP_004046339.1 CDS Riean_1677 NC_014738.1 1850232 1850597 D KEGG: fba:FIC_00089 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1850232..1850597 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002455 YP_004046340.1 CDS Riean_1679 NC_014738.1 1851884 1852423 R COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: fba:FIC_02115 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; SPTR: Transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; transcriptional regulator, crp/fnr family complement(1851884..1852423) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002457 YP_004046341.1 CDS Riean_1680 NC_014738.1 1852563 1853282 R COGs: COG2846 Regulator of cell morphogenesis and NO signaling; InterPro IPR007500: IPR012312: IPR019903; KEGG: fba:FIC_00503 nitric oxide-dependent regulator DnrN or NorA; PFAM: protein of unknown function DUF542 ScdA domain protein; Hemerythrin HHE cation binding domain protein; SPTR: Cell division and morphogenesis protein ScdA; TIGRFAM: iron-sulfur cluster repair di-iron protein; PFAM: Hemerythrin HHE cation binding domain; Domain of Unknown function (DUF542); TIGRFAM: iron-sulfur cluster repair di-iron protein; iron-sulfur cluster repair di-iron protein complement(1852563..1853282) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002458 YP_004046342.1 CDS Riean_1681 NC_014738.1 1853377 1853814 R COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: fjo:Fjoh_2411 BadM/Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074; SPTR: Transcriptional regulator, BadM/Rrf2 family protein; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (transcriptional regulator); transcriptional regulator, badm/rrf2 family complement(1853377..1853814) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002459 YP_004046343.1 CDS Riean_1682 NC_014738.1 1854033 1854647 D COGs: COG1739 conserved hypothetical protein; InterPro IPR001498; KEGG: fba:FIC_01656 hypothetical protein; PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; SPTR: Putative uncharacterized protein; manually curated; PFAM: Uncharacterized protein family UPF0029; TIGRFAM: uncharacterized protein, YigZ family; hypothetical protein 1854033..1854647 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002460 YP_004046344.1 CDS Riean_1683 NC_014738.1 1854649 1855626 R COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: fjo:Fjoh_4070 ApbE family lipoprotein; PFAM: ApbE family lipoprotein; SPTR: ApbE family lipoprotein; PFAM: ApbE family; apbe family lipoprotein complement(1854649..1855626) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002461 YP_004046345.1 CDS Riean_1684 NC_014738.1 1855616 1857799 R COGs: COG3182 Uncharacterized iron-regulated membrane protein; InterPro IPR008254: IPR008333: IPR001433; KEGG: fjo:Fjoh_4069 flavodoxin/nitric oxide synthase; PFAM: flavodoxin/nitric oxide synthase; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; SPTR: Flavodoxin/nitric oxide synthase; PFAM: Flavodoxin; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; flavodoxin/nitric oxide synthase complement(1855616..1857799) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002462 YP_004046346.1 CDS Riean_1685 NC_014738.1 1857805 1858284 R KEGG: dfe:Dfer_1666 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Predicted periplasmic protein (DUF2271); hypothetical protein complement(1857805..1858284) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002463 YP_004046347.1 CDS Riean_1686 NC_014738.1 1858293 1859783 R InterPro IPR002110: IPR020683; KEGG: fjo:Fjoh_4067 ankyrin; PFAM: Ankyrin; SMART: Ankyrin; SPTR: Ankyrin; PFAM: Ankyrin repeat; ankyrin complement(1858293..1859783) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002464 YP_004046348.1 CDS Riean_1687 NC_014738.1 1859875 1861218 R KEGG: fjo:Fjoh_4072 hypothetical protein; SPTR: Hypothetical lipoprotein; hypothetical protein complement(1859875..1861218) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002465 YP_004046349.1 CDS Riean_1688 NC_014738.1 1861228 1863582 R COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: fjo:Fjoh_4071 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; tonb-dependent receptor complement(1861228..1863582) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002466 YP_004046350.1 CDS Riean_1689 NC_014738.1 1863652 1864293 D KEGG: fba:FIC_01473 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1863652..1864293 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002467 YP_004046351.1 CDS Riean_1690 NC_014738.1 1864341 1865762 D COGs: COG1760 L-serine deaminase; InterPro IPR005131: IPR005130: IPR004644; KEGG: fba:FIC_01471 L-serine dehydratase; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; PRIAM: L-serine ammonia-lyase; SPTR: L-serine ammonia-lyase; TIGRFAM: L-serine dehydratase 1; PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, single chain form; L-serine dehydratase, iron-sulfur-dependent, beta subunit; l-serine dehydratase 1 1864341..1865762 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002468 YP_004046352.1 CDS Riean_1691 NC_014738.1 1865927 1866256 D COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: fba:FIC_01762 transcriptional regulator, PadR family; PFAM: transcriptional regulator PadR family protein; SPTR: Transcriptional regulator, PadR family; PFAM: Transcriptional regulator PadR-like family; transcriptional regulator, padr family 1865927..1866256 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002469 YP_004046353.1 CDS Riean_1692 NC_014738.1 1866275 1867954 D COGs: COG1983 Putative stress-responsive transcriptional regulator protein; InterPro IPR007168; KEGG: fba:FIC_01761 hypothetical protein; PFAM: PspC domain protein; SPTR: Putative uncharacterized protein; PFAM: PspC domain; phage shock protein c, pspc 1866275..1867954 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002470 YP_004046354.1 CDS Riean_1693 NC_014738.1 1868166 1868738 D COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: fba:FIC_01760 acyltransferase family protein; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: Acyltransferase family protein; PFAM: Acyltransferase; phospholipid/glycerol acyltransferase 1868166..1868738 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002471 YP_004046355.1 CDS Riean_1694 NC_014738.1 1868753 1869175 D COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683: IPR003736; KEGG: fba:FIC_01759 hypothetical protein; PFAM: thioesterase superfamily protein; SPTR: Putative uncharacterized protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1; thioesterase superfamily protein 1868753..1869175 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002472 YP_004046356.1 CDS Riean_1695 NC_014738.1 1869176 1870168 D COGs: COG1169 Isochorismate synthase; InterPro IPR015890; KEGG: fba:FIC_01758 isochorismate synthase; PFAM: Chorismate binding-like; SPTR: Isochorismate synthase; PFAM: chorismate binding enzyme; chorismate binding protein 1869176..1870168 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002473 YP_004046357.1 CDS Riean_1696 NC_014738.1 1870181 1870810 D COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595: IPR001808; KEGG: sli:Slin_6174 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SPTR: Transcriptional regulator, Crp/Fnr family; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain; transcriptional regulator, crp/fnr family 1870181..1870810 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002474 YP_004046358.1 CDS Riean_1697 NC_014738.1 1870893 1871621 D COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: fba:FIC_01825 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC superfamily ATP binding cassette transporter, ABC protein; PFAM: ABC transporter; BrancheD-chain amino acid ATP-binding cassette transporter; ABC transporter 1870893..1871621 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002475 YP_004046359.1 CDS Riean_1698 NC_014738.1 1871638 1872210 D COGs: COG2096 conserved hypothetical protein; InterPro IPR002779: IPR017858; KEGG: fba:FIC_02267 Cob(I)alamin adenosyltransferase PduO; PFAM: cobalamin adenosyltransferase; PRIAM: Cob(I)yrinic acid a,c-diamide adenosyltransferase; SPTR: Cobalamin adenosyltransferase; TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase; ATP/cobalamin adenosyltransferase 1871638..1872210 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002476 YP_004046360.1 CDS Riean_1699 NC_014738.1 1872197 1872847 D COGs: COG1564 Thiamine pyrophosphokinase; InterPro IPR007371: IPR006282; KEGG: fba:FIC_02266 thiamin pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic domain-containing protein; SPTR: Thiamine diphosphokinase; TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, vitamin B1 binding domain; Thiamin pyrophosphokinase, catalytic domain; TIGRFAM: thiamine pyrophosphokinase; thiamine pyrophosphokinase 1872197..1872847 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002477 YP_004046361.1 CDS Riean_1700 NC_014738.1 1872961 1874352 D COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183; KEGG: fba:FIC_02265 arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Putative arginine decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; orn/dap/arg decarboxylase 2 1872961..1874352 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002478 YP_004046362.1 CDS Riean_1701 NC_014738.1 1874379 1875236 D COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR020855: IPR006035: IPR005925; KEGG: fba:FIC_02262 agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; SPTR: Agmatinase; TIGRFAM: agmatinase; PFAM: Arginase family; TIGRFAM: agmatinase; agmatinase 1874379..1875236 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002479 YP_004046363.1 CDS Riean_1702 NC_014738.1 1875335 1875703 D COGs: COG3759 membrane protein; InterPro IPR009732; KEGG: fba:FIC_02136 hypothetical protein; PFAM: protein of unknown function DUF1304; SPTR: Integral membrane protein; PFAM: Protein of unknown function (DUF1304); hypothetical protein 1875335..1875703 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002480 YP_004046364.1 CDS Riean_1703 NC_014738.1 1875709 1876062 D COGs: COG2315 conserved hypothetical protein; KEGG: fba:FIC_01291 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF419); hypothetical protein 1875709..1876062 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002481 YP_004046365.1 CDS Riean_1704 NC_014738.1 1876066 1876986 R COGs: COG0196 FAD synthase; InterPro IPR015864: IPR015865: IPR002606; KEGG: fba:FIC_01292 FMN adenylyltransferase; PFAM: FAD synthetase; Riboflavin kinase; SPTR: Possible FAD synthetase; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase; riboflavin biosynthesis protein ribf complement(1876066..1876986) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002482 YP_004046366.1 CDS Riean_1705 NC_014738.1 1877127 1878635 D COGs: COG0055 F0F1-type ATP synthase beta subunit; InterPro IPR020003: IPR004100: IPR000194: IPR000793: IPR 005722: IPR003593; KEGG: fba:FIC_01293 F0F1 ATP synthase subunit beta; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; SPTR: H(+)-transporting two-sector ATPase; TIGRFAM: ATP synthase F1, beta subunit; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain; ATP synthase alpha/beta chain, C terminal domain; TIGRFAM: ATP synthase, F1 beta subunit; ATP synthase f1 subunit beta 1877127..1878635 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002483 YP_004046367.1 CDS Riean_1706 NC_014738.1 1878709 1878990 D InterPro IPR020546; KEGG: fba:FIC_01294 ATP synthase epsilon chain; PFAM: ATPase, F1 complex, delta/epsilon subunit-like; SPTR: ATP synthase subunit epsilon; PFAM: ATP synthase, Delta/Epsilon chain, beta-sandwich domain; ATPase F1 subunit delta/epsilon 1878709..1878990 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002484 YP_004046368.1 CDS Riean_1707 NC_014738.1 1879079 1879498 R COGs: COG0105 Nucleoside diphosphate kinase; InterPro IPR001564; KEGG: fba:FIC_01359 nucleoside diphosphate kinase; PFAM: nucleoside diphosphate kinase; PRIAM: Nucleoside-diphosphate kinase; SMART: nucleoside diphosphate kinase; SPTR: Nucleoside diphosphate kinase; PFAM: Nucleoside diphosphate kinase; nucleoside-diphosphate kinase complement(1879079..1879498) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002485 YP_004046369.1 CDS Riean_1708 NC_014738.1 1879773 1880846 R COGs: COG0115 BrancheD-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR018300: IPR001544: IPR005786; KEGG: fba:FIC_01351 brancheD-chain amino acid aminotransferase; PFAM: aminotransferase class IV; PRIAM: BrancheD-chain-amino-acid transaminase; SPTR: BrancheD-chain-amino-acid aminotransferase; TIGRFAM: brancheD-chain amino acid aminotransferase; PFAM: Aminotransferase class IV; TIGRFAM: brancheD-chain amino acid aminotransferase, group II; brancheD-chain amino acid aminotransferase complement(1879773..1880846) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002486 YP_004046370.1 CDS Riean_1709 NC_014738.1 1880931 1881605 D COGs: COG4121 conserved hypothetical protein; InterPro IPR008471; KEGG: fba:FIC_01352 peptidase; PFAM: protein of unknown function DUF752; SPTR: tRNA (5-aminomethyl-2-thiouridylate) methyltransferase; PFAM: Protein of unknown function (DUF752); hypothetical protein 1880931..1881605 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002487 YP_004046371.1 CDS Riean_1710 NC_014738.1 1881781 1882422 R COGs: COG0692 Uracil DNA glycosylase; InterPro IPR018085: IPR005122: IPR002043; KEGG: fba:FIC_01867 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; SPTR: Uracil-DNA glycosylase; TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase; uracil-DNA glycosylase complement(1881781..1882422) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002489 YP_004046372.1 CDS Riean_1711 NC_014738.1 1882433 1882918 R COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: fnu:FN1519 23S rRNA methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: rRNA methylase; PFAM: SpoU rRNA Methylase family; tRNA/rRNA methyltransferase (spou) complement(1882433..1882918) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002490 YP_004046373.1 CDS Riean_1712 NC_014738.1 1882934 1884292 R COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; InterPro IPR000713: IPR013221; KEGG: fjo:Fjoh_0414 cytoplasmic peptidoglycan synthetase domain-containing protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; SPTR:UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl -meso-diaminopimelateligase; PFAM: Mur ligase family, catalytic domain; Mur ligase middle domain; cytoplasmic peptidoglycan synthetase domain-containing protein complement(1882934..1884292) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002491 YP_004046374.1 CDS Riean_1713 NC_014738.1 1884397 1884927 R KEGG: fba:FIC_02088 lipoprotein; SPTR: Probable lipoprotein; lipoprotein complement(1884397..1884927) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002492 YP_004046375.1 CDS Riean_1714 NC_014738.1 1884932 1885117 R KEGG: fba:FIC_02087 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1884932..1885117) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002493 YP_004046376.1 CDS Riean_1715 NC_014738.1 1885158 1885484 D KEGG: fba:FIC_02086 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1885158..1885484 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002494 YP_004046377.1 CDS Riean_1716 NC_014738.1 1885460 1886398 D COGs: COG2515 1-aminocyclopropane-1-carboxylate deaminase; KEGG: fba:FIC_02085 1-aminocyclopropane-1-carboxylate deaminase; SPTR: 1-aminocyclopropane-1-carboxylate deaminase; 1-aminocyclopropane-1-carboxylate deaminase 1885460..1886398 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002495 YP_004046378.1 CDS Riean_1717 NC_014738.1 1886509 1887567 D COGs: COG1705 Muramidase (flagellum-specific); InterPro IPR002901: IPR018392: IPR013338: IPR002482; KEGG: fba:FIC_02084 hemagglutinin; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Peptidoglycan-binding lysin domain; SMART: Lysozyme subfamily 2; Peptidoglycan-binding LysM; SPTR: Hemagglutinin; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; LysM domain; mannosyl-glycoprotein endo-beta-n-acetylglucosamidase 1886509..1887567 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002496 YP_004046379.1 CDS Riean_1718 NC_014738.1 1887598 1888878 D COGs: COG0001 Glutamate-1-semialdehyde aminotransferase; InterPro IPR005814: IPR004639; KEGG: fba:FIC_02083 glutamate-1-semialdehyde aminotransferase; PFAM: aminotransferase class-III; SPTR: Glutamate-1-semialdehyde aminotransferase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; glutamate-1-semialdehyde-2,1-aminomutase 1887598..1888878 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002497 YP_004046380.1 CDS Riean_1719 NC_014738.1 1888989 1891121 D COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002471: IPR002469; KEGG: fba:FIC_01450 dipeptidyl peptidase IV; PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; SPTR: Possible dipeptidyl-peptidase IV; PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region; peptidase s9b dipeptidylpeptidase iv domain-containing protein 1888989..1891121 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002498 YP_004046381.1 CDS Riean_1720 NC_014738.1 1891370 1892155 R COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; KEGG: fba:FIC_01484 metal-dependent hydrolases of the beta-lactamase superfamily I; PhnP protein; SPTR: Possible phosphonate metabolism protein PhnP; PFAM: Metallo-beta-lactamase superfamily; metal-dependent hydrolase complement(1891370..1892155) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002500 YP_004046382.1 CDS Riean_1721 NC_014738.1 1892192 1893625 D KEGG: fba:FIC_01485 nicotinamide mononucleotide adenylyltransferase; SPTR: Putative uncharacterized protein; nicotinamide mononucleotide adenylyltransferase 1892192..1893625 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002501 YP_004046383.1 CDS Riean_1722 NC_014738.1 1893638 1894087 D COGs: COG1956 GAF domain-containing protein; InterPro IPR003018; KEGG: fba:FIC_01486 GAF domain-containing protein; PFAM: GAF domain protein; SPTR: Possible GAF domain protein; PFAM: GAF domain; gaf sensor protein 1893638..1894087 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002502 YP_004046384.1 CDS Riean_1723 NC_014738.1 1894231 1894806 R KEGG: fba:FIC_00470 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1894231..1894806) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002503 YP_004046385.1 CDS Riean_1724 NC_014738.1 1894965 1896350 D COGs: COG1690 conserved hypothetical protein; KEGG: sil:SPO0160 hypothetical protein; SPTR: RtcB family protein; PFAM: Uncharacterized protein family UPF0027; hypothetical protein 1894965..1896350 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002504 YP_004046386.1 CDS Riean_1725 NC_014738.1 1896371 1896529 D SPTR: Putative uncharacterized protein; hypothetical protein 1896371..1896529 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002505 YP_004046387.1 CDS Riean_1726 NC_014738.1 1896601 1896939 D InterPro IPR014905; KEGG: shi:Shel_01800 HIRAN domain-containing protein; PFAM: HIRAN; SPTR: HIRAN domain-containing protein; PFAM: HIRAN domain; hiran domain-containing protein 1896601..1896939 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002506 YP_004046388.1 CDS Riean_1727 NC_014738.1 1897390 1900659 D COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR006935: IPR001650: IPR014021: IPR014001; KEGG: bam:Bamb_3974 type III restriction enzyme, res subunit; PFAM: type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicase; SPTR: Helicase; PFAM: Type III restriction enzyme, res subunit; type iii restriction protein res subunit 1897390..1900659 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002507 YP_004046389.1 CDS Riean_1728 NC_014738.1 1900707 1901372 D KEGG: pgi:PG1449 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1900707..1901372 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002508 YP_004046390.1 CDS Riean_1729 NC_014738.1 1901610 1903157 D COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR002052: IPR002296: IPR003356; KEGG: nhl:Nhal_3964 N-6 DNA methylase; PFAM: N-6 DNA methylase; SPTR: N-6 DNA methylase; PFAM: N-6 DNA Methylase; HsdM N-terminal domain; n-6 DNA methylase 1901610..1903157 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002509 YP_004046391.1 CDS Riean_1730 NC_014738.1 1903162 1904259 D COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: tau:Tola_1157 restriction modification system DNA specificity domain protein; PFAM: restriction modification system DNA specificity domain; SPTR: Restriction endonuclease S subunits; PFAM: Type I restriction modification DNA specificity domain; restriction modification system DNA specificity domain 1903162..1904259 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002510 YP_004046392.1 CDS Riean_1731 NC_014738.1 1904394 1907837 D COGs: COG4096 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR007409: IPR006935: IPR014021: IPR001650: IPR 014001; KEGG: nhl:Nhal_3962 type III restriction protein res subunit; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; PRIAM: Type I site-specific deoxyribonuclease; SMART: DEAD-like helicase; SPTR: Type III restriction protein res subunit; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Domain of unknown function (DUF3559); Type III restriction enzyme, res subunit; type i site-specific deoxyribonuclease 1904394..1907837 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002511 YP_004046393.1 CDS Riean_1732 NC_014738.1 1907903 1908763 R COGs: COG3568 Metal-dependent hydrolase; InterPro IPR005135; KEGG: fjo:Fjoh_1565 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Putative uncharacterized protein; manually curated; PFAM: Endonuclease/Exonuclease/phosphatase family; endonuclease/exonuclease/phosphatase complement(1907903..1908763) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002512 YP_004046394.1 CDS Riean_1733 NC_014738.1 1908744 1910561 R COGs: COG1785 Alkaline phosphatase; InterPro IPR001952; KEGG: dfe:Dfer_1383 alkaline phosphatase; PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase; SPTR: Alkaline phosphatase; PFAM: Alkaline phosphatase; alkaline phosphatase complement(1908744..1910561) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002513 YP_004046395.1 CDS Riean_1734 NC_014738.1 1910561 1912072 R InterPro IPR012944; KEGG: cpi:Cpin_0005 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain-containing protein; PFAM: SusD family; ragb/susd domain-containing protein complement(1910561..1912072) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002514 YP_004046396.1 CDS Riean_1735 NC_014738.1 1912093 1914963 R InterPro IPR012910: IPR000531; KEGG: cpi:Cpin_0004 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Probable outer membrane protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; tonb-dependent receptor plug complement(1912093..1914963) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002515 YP_004046397.1 CDS Riean_1736 NC_014738.1 1915082 1916491 R InterPro IPR004843: IPR011658; KEGG: pdi:BDI_3030 Icc family phosphohydrolase; PFAM: metallophosphoesterase; SMART: PA14 domain protein; SPTR: Icc family phosphohydrolase; PFAM: Calcineurin-like phosphoesterase; PA14 domain; metallophosphoesterase complement(1915082..1916491) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002516 YP_004046398.1 CDS Riean_1737 NC_014738.1 1916564 1918237 R COGs: COG3104 Dipeptide/tripeptide permease; InterPro IPR018456: IPR000109: IPR005279; KEGG: fba:FIC_01451 proton-dependent peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; SPTR: Putative proton-dependent peptide transporter; TIGRFAM: amino acid/peptide transporter; PFAM: POT family; TIGRFAM: amino acid/peptide transporter (Peptide:H+ symporter), bacterial; amino acid/peptide transporter complement(1916564..1918237) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002517 YP_004046399.1 CDS Riean_1738 NC_014738.1 1918348 1918908 R KEGG: fba:FIC_01475 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1918348..1918908) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002518 YP_004046400.1 CDS Riean_1739 NC_014738.1 1919251 1919997 D COGs: COG0274 Deoxyribose-phosphate aldolase; InterPro IPR002915: IPR011343; KEGG: fjo:Fjoh_1656 deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PRIAM: Deoxyribose-phosphate aldolase; SPTR: Possible deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase; deoxyribose-phosphate aldolase 1919251..1919997 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002519 YP_004046401.1 CDS Riean_1740 NC_014738.1 1920129 1921727 R COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR003016: IPR000089: IPR004167: IPR001078; KEGG: fba:FIC_01401 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; SPTR: Dihydrolipoyllysine-residue acetyltransferase; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; hypothetical protein complement(1920129..1921727) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002520 YP_004046402.1 CDS Riean_1741 NC_014738.1 1921802 1922803 R COGs: COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type alpha subunit; InterPro IPR001017: IPR017597; KEGG: fba:FIC_01402 pyruvate dehydrogenase E1 component alpha subunit; PFAM: dehydrogenase E1 component; PRIAM: Pyruvate dehydrogenase (acetyl-transferring); SPTR: Pyruvate dehydrogenase (Acetyl-transferring); TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; PFAM: Dehydrogenase E1 component; TIGRFAM: pyruvate dehydrogenase E1 component, alpha subunit; pyruvate dehydrogenase (acetyl-transferring) e1 component subunit alpha complement(1921802..1922803) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002521 YP_004046403.1 CDS Riean_1742 NC_014738.1 1922943 1923584 R KEGG: ngr:NAEGRDRAFT_80252 ABC transporter AAA ATPase; SPTR: Abc transporter AAA ATPase; hypothetical protein complement(1922943..1923584) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002522 YP_004046404.1 CDS Riean_1743 NC_014738.1 1923620 1924243 R KEGG: pyo:PY02966 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1923620..1924243) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002523 YP_004046405.1 CDS Riean_1744 NC_014738.1 1924351 1925349 D COGs: COG2378 transcriptional regulator protein; KEGG: rbi:RB2501_07125 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1924351..1925349 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002524 YP_004046406.1 CDS Riean_1745 NC_014738.1 1925419 1926921 R COGs: COG0531 Amino acid transporter; InterPro IPR000358: IPR004841: IPR002293; KEGG: fjo:Fjoh_1930 amino acid permease-associated region; PFAM: amino acid permease-associated region; SPTR: Amino acid permease-associated region; PFAM: Amino acid permease; TC 2.A.3; amino acid/polyamine/organocation transporter, apc superfamily complement(1925419..1926921) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002525 YP_004046407.1 CDS Riean_1746 NC_014738.1 1927121 1927789 D COGs: COG3201 Nicotinamide mononucleotide transporter; InterPro IPR006419; KEGG: fba:FIC_00603 ribosyl nicotinamide transporter, PnuC-like protein; PFAM: Nicotinamide mononucleotide transporter PnuC; SPTR: Ribosyl nicotinamide transporter, pnuC-like protein; TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter; TIGRFAM: nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter pnuc 1927121..1927789 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002526 YP_004046408.1 CDS Riean_1747 NC_014738.1 1927793 1928029 D KEGG: fba:FIC_01457 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1927793..1928029 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002527 YP_004046409.1 CDS Riean_1748 NC_014738.1 1928128 1931298 D InterPro IPR012910: IPR000531; KEGG: bfs:BF1992 outer membrane protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Outer membrane protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; tonb-dependent receptor plug 1928128..1931298 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002528 YP_004046410.1 CDS Riean_1749 NC_014738.1 1931310 1932782 D KEGG: bfs:BF1993 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: SusD family; hypothetical protein 1931310..1932782 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002529 YP_004046411.1 CDS Riean_1750 NC_014738.1 1932791 1933699 D KEGG: bfs:BF1994 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1932791..1933699 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002530 YP_004046412.1 CDS Riean_1751 NC_014738.1 1933706 1934617 D KEGG: bfs:BF1995 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1933706..1934617 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002531 YP_004046413.1 CDS Riean_1752 NC_014738.1 1934632 1935240 D KEGG: bfs:BF1996 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1934632..1935240 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002532 YP_004046414.1 CDS Riean_1753 NC_014738.1 1935258 1936439 D KEGG: gfo:GFO_2515 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1935258..1936439 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002533 YP_004046415.1 CDS Riean_1754 NC_014738.1 1936475 1937236 D InterPro IPR003305; KEGG: fba:FIC_00723 hypothetical protein; PFAM: Carbohydrate-binding CenC domain protein; SPTR: Putative uncharacterized protein; PFAM: Carbohydrate binding domain; carbohydrate-binding cenc domain-containing protein 1936475..1937236 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002534 YP_004046416.1 CDS Riean_1755 NC_014738.1 1937247 1938410 D InterPro IPR018976; KEGG: gfo:GFO_2514 hypothetical protein; PFAM: Peptidase M75, Imelysin; SPTR: Putative uncharacterized protein; PFAM: Imelysin; peptidase m75, imelysin 1937247..1938410 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002535 YP_004046417.1 CDS Riean_1756 NC_014738.1 1938400 1939773 D InterPro IPR011020; KEGG: gfo:GFO_2513 vitamin K-dependent gamma-carboxylase; SMART: HTTM domain protein; SPTR: Vitamin K-dependent gamma-carboxylase; PFAM: Vitamin K-dependent gamma-carboxylase; httm domain-containing protein 1938400..1939773 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002536 YP_004046418.1 CDS Riean_1757 NC_014738.1 1939754 1941967 D COGs: COG4772 Outer membrane receptor for Fe3+-dicitrate; InterPro IPR012910: IPR000531; KEGG: gfo:GFO_2512 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent outer membrane receptor; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; tonb-dependent receptor 1939754..1941967 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002537 YP_004046419.1 CDS Riean_1758 NC_014738.1 1942069 1943187 R KEGG: chu:CHU_0515 leucine-rich repeat-containing protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1942069..1943187) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002538 YP_004046420.1 CDS Riean_1759 NC_014738.1 1943523 1944095 D KEGG: cat:CA2559_05150 DNA mismatch repair protein; SPTR: Putative uncharacterized protein; PFAM: PepSY-associated TM helix; DNA mismatch repair protein 1943523..1944095 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002539 YP_004046421.1 CDS Riean_1760 NC_014738.1 1944323 1944709 R KEGG: bvu:BVU_2672 hypothetical protein; SPTR: Histone-like bacterial DNA-binding protein; PFAM: Bacterial DNA-binding protein; TIGRFAM: DNA-binding protein, histone-like, putative; hypothetical protein complement(1944323..1944709) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002540 YP_004046422.1 CDS Riean_1761 NC_014738.1 1944740 1946503 R KEGG: str:Sterm_1739 outer membrane autotransporter barrel domain protein; SPTR: Outer membrane autotransporter barrel domain protein; hypothetical protein complement(1944740..1946503) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002541 YP_004046423.1 CDS Riean_1762 NC_014738.1 1947056 1948357 R InterPro IPR000408: IPR001296; KEGG: fba:FIC_00716 TPR/glycosyl transferase domain protein; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1; group 1 glycosyl transferase complement(1947056..1948357) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002542 YP_004046424.1 CDS Riean_1763 NC_014738.1 1948344 1950869 R KEGG: fba:FIC_00715 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Bacterial membrane protein YfhO; hypothetical protein complement(1948344..1950869) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002543 YP_004046425.1 CDS Riean_1764 NC_014738.1 1950895 1951116 R KEGG: fba:FIC_00714 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1950895..1951116) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002544 YP_004046426.1 CDS Riean_1765 NC_014738.1 1951207 1952256 R KEGG: fba:FIC_00713 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1951207..1952256) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002545 YP_004046427.1 CDS Riean_1766 NC_014738.1 1952295 1953071 R COGs: COG0566 rRNA methylase; InterPro IPR013123: IPR001537: IPR004441; KEGG: fba:FIC_01848 rRNA methylase; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; SPTR: rRNA methylase; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, putative, group 3; RNA methyltransferase, trmh family, group 3 complement(1952295..1953071) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002546 YP_004046428.1 CDS Riean_1767 NC_014738.1 1953082 1953546 R KEGG: fba:FIC_01849 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1953082..1953546) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002547 YP_004046429.1 CDS Riean_1768 NC_014738.1 1953762 1954766 D COGs: COG0714 MoxR-like ATPase; InterPro IPR011703: IPR016366; KEGG: fba:FIC_01850 MoxR-like ATPase in aerotolerance operon; PFAM: ATPase associated with various cellular activities AAA_3; SPTR: MoxR family ATPase; PFAM: ATPase family associated with various cellular activities (AAA); ATPase 1953762..1954766 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002548 YP_004046430.1 CDS Riean_1769 NC_014738.1 1954797 1955660 D COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881: IPR002035; KEGG: fba:FIC_01851 hypothetical protein; PFAM: protein of unknown function DUF58; von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: Probable protein of hypothetical function DUF58; PFAM: Protein of unknown function DUF58; hypothetical protein 1954797..1955660 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002549 YP_004046431.1 CDS Riean_1770 NC_014738.1 1955657 1956559 D KEGG: fba:FIC_01852 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1955657..1956559 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002550 YP_004046432.1 CDS Riean_1771 NC_014738.1 1956552 1957544 D COGs: COG1240 Mg-chelatase subunit ChlD; InterPro IPR002035; KEGG: fba:FIC_01853 aerotolerance operon BatA; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: von Willebrand factor(VWA) type A domain-containing protein; PFAM: von Willebrand factor type A domain; von willebrand factor type a 1956552..1957544 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002551 YP_004046433.1 CDS Riean_1772 NC_014738.1 1957569 1958576 D InterPro IPR002035; KEGG: fba:FIC_01854 BatB; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: BatB; PFAM: von Willebrand factor type A domain; von willebrand factor type a 1957569..1958576 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002552 YP_004046434.1 CDS Riean_1773 NC_014738.1 1958599 1959360 D InterPro IPR001440: IPR019734: IPR013026; KEGG: fba:FIC_01855 BatC; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: BatC; PFAM: Tetratricopeptide repeat; tetratricopeptide tpr_1 repeat-containing protein 1958599..1959360 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002553 YP_004046435.1 CDS Riean_1774 NC_014738.1 1959366 1961054 D KEGG: fba:FIC_01856 BatD; SPTR: BatD; hypothetical protein 1959366..1961054 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002554 YP_004046436.1 CDS Riean_1775 NC_014738.1 1961097 1961699 D COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: fba:FIC_01857 multiple antibiotic resistance protein MarC; PFAM: multiple antibiotic resistance (MarC)-related protein; SPTR: MarC family integral membrane protein; PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family; multiple antibiotic resistance (marc)-like protein 1961097..1961699 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002555 YP_004046437.1 CDS Riean_1776 NC_014738.1 1961708 1961908 D KEGG: fba:FIC_01858 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1961708..1961908 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002556 YP_004046438.1 CDS Riean_1777 NC_014738.1 1961952 1962995 R COGs: COG0337 3-dehydroquinate synthetase; InterPro IPR002658: IPR016037: IPR016303; KEGG: fba:FIC_00797 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; PRIAM: 3-dehydroquinate synthase; SPTR: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; 3-dehydroquinate synthase complement(1961952..1962995) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002557 YP_004046439.1 CDS Riean_1778 NC_014738.1 1963057 1963536 R KEGG: dre:100332364 solute carrier family 35, member E1-like; SPTR: WejY; hypothetical protein complement(1963057..1963536) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002558 YP_004046440.1 CDS Riean_1779 NC_014738.1 1963733 1964905 D InterPro IPR002872; KEGG: fba:FIC_00798 Carbapenem antibiotics biosynthesis protein CarD; PFAM: Proline dehydrogenase; SPTR: Proline dehydrogenase; PFAM: Proline dehydrogenase; proline dehydrogenase 1963733..1964905 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002559 YP_004046441.1 CDS Riean_1780 NC_014738.1 1965253 1966266 D COGs: COG0646 Methionine synthase I (cobalamin-dependent) methyltransferase domain; InterPro IPR003726: IPR011822; KEGG: fba:FIC_02052 5-methyltetrahydrofolate--homocysteine methyltransferase; PFAM: homocysteine S-methyltransferase; SPTR: Methionine synthase-like protein; PFAM: Homocysteine S-methyltransferase; homocysteine s-methyltransferase 1965253..1966266 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002560 YP_004046442.1 CDS Riean_1781 NC_014738.1 1966263 1968953 D COGs: COG1410 Methionine synthase I cobalamin-binding domain; InterPro IPR000489: IPR003759: IPR006158: IPR004223: IPR 011822; KEGG: fba:FIC_02051 5-methyltetrahydrofolate--homocysteine methyltransferase; PFAM: Vitamin B12 dependent methionine synthase activation region; dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; PRIAM: Methionine synthase; SPTR: Methionine synthase; TIGRFAM: methionine synthase; PFAM: Pterin binding enzyme; Vitamin B12 dependent methionine synthase, activation domain; B12 binding domain; TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; methylmalonyl-CoA mutase C-terminal domain; methionine synthase 1966263..1968953 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002561 YP_004046443.1 CDS Riean_1782 NC_014738.1 1968987 1969943 D COGs: COG0685 5 10-methylenetetrahydrofolate reductase; InterPro IPR003171: IPR004620; KEGG: chu:CHU_1435 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; PRIAM: Methylenetetrahydrofolate reductase (NAD(P)H); SPTR: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase, prokaryotic form; 5,10-methylenetetrahydrofolate reductase 1968987..1969943 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002562 YP_004046444.1 CDS Riean_1783 NC_014738.1 1969988 1971172 R COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030: IPR014031; KEGG: fps:FP2327 3-oxoacyl-(acyl-carrier-protein) synthase; PFAM: Beta-ketoacyl synthase; SPTR: 3-oxoacyl-(Acyl-carrier-protein) synthase; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; beta-ketoacyl synthase complement(1969988..1971172) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002563 YP_004046445.1 CDS Riean_1784 NC_014738.1 1971280 1972437 D COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR001917: IPR004839; KEGG: fjo:Fjoh_0814 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; PRIAM: 8-amino-7-oxononanoate synthase; SPTR: 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase 1971280..1972437 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002564 YP_004046446.1 CDS Riean_1785 NC_014738.1 1972442 1973059 D COGs: COG0132 Dethiobiotin synthetase; InterPro IPR004472; KEGG: hmg:100211816 similar to DEHA2G24772p; PRIAM: Dethiobiotin synthase; SPTR: Dethiobiotin synthetase; TIGRFAM: dethiobiotin synthase; TIGRFAM: dethiobiotin synthase; dethiobiotin synthase 1972442..1973059 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002565 YP_004046447.1 CDS Riean_1786 NC_014738.1 1973056 1974336 D COGs: COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; InterPro IPR005814; KEGG: fps:FP2328 adenosylmethionine--8-amino-7-oxononanoatetransaminase; PFAM: aminotransferase class-III; SPTR: Adenosylmethionine--8-amino-7-oxononanoatetransa minase; PFAM: Aminotransferase class-III; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase; aminotransferase class-iii 1973056..1974336 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002566 YP_004046448.1 CDS Riean_1787 NC_014738.1 1974385 1974948 D KEGG: cbi:CLJ_B1455 iron chelate uptake ABC transporter, FeCT family, solute-binding protein; SPTR: SMC superfamily ATP-binding chromosome segregation protein; hypothetical protein 1974385..1974948 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002567 YP_004046449.1 CDS Riean_1788 NC_014738.1 1975123 1976049 D COGs: COG0338 Site-specific DNA methylase; InterPro IPR002052: IPR002294: IPR012327: IPR012326; KEGG: seu:SEQ_1570 DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: DNA-methyltransferase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; TIGRFAM: DNA adenine methylase (dam); DNA adenine methylase 1975123..1976049 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002568 YP_004046450.1 CDS Riean_1789 NC_014738.1 1976062 1977126 D COGs: COG3392 Adenine-specific DNA methylase; InterPro IPR002294: IPR012327; KEGG: brm:Bmur_1618 site-specific DNA-methyltransferase (adenine-specific); PFAM: D12 class N6 adenine-specific DNA methyltransferase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Ulcer associated adenine specific DNA methyltransferase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; site-specific DNA-methyltransferase (adenine-specific) 1976062..1977126 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002569 YP_004046451.1 CDS Riean_1790 NC_014738.1 1977119 1978507 D KEGG: brm:Bmur_1620 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1977119..1978507 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002570 YP_004046452.1 CDS Riean_1791 NC_014738.1 1978579 1979298 R KEGG: bfs:BF0090 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(1978579..1979298) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002571 YP_004046453.1 CDS Riean_1792 NC_014738.1 1979328 1980383 R KEGG: bmy:Bm1_02870 T-cell receptor beta chain ANA 11; SPTR: T-cell receptor beta chain ANA 11, putative; hypothetical protein complement(1979328..1980383) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002572 YP_004046454.1 CDS Riean_1793 NC_014738.1 1980501 1981709 R COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR001678; KEGG: fba:FIC_01693 ribosomal RNA small subunit methyltransferase B; PFAM: Fmu (Sun) domain protein; SPTR: Probable sun protein; PFAM: NOL1/NOP2/sun family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB; fmu (sun) domain-containing protein complement(1980501..1981709) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002573 YP_004046455.1 CDS Riean_1794 NC_014738.1 1982031 1983461 D COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR002646: IPR006674: IPR006675; KEGG: fba:FIC_02118 tRNA nucleotidyltransferase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SPTR: tRNA nucleotidyltransferase; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; Poly A polymerase head domain; TIGRFAM: uncharacterized domain HDIG; polynucleotide adenylyltransferase/metal dependent phosphohydrolase 1982031..1983461 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002574 YP_004046456.1 CDS Riean_1795 NC_014738.1 1983520 1985787 R COGs: COG1048 Aconitase A; InterPro IPR018136: IPR001030: IPR000573: IPR006248; KEGG: fjo:Fjoh_1952 aconitate hydratase; PFAM: aconitate hydratase domain-containing protein; SPTR: Aconitate hydratase; TIGRFAM: aconitate hydratase; PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); TIGRFAM: aconitate hydratase, mitochondrial; aconitase complement(1983520..1985787) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002575 YP_004046457.1 CDS Riean_1796 NC_014738.1 1985908 1986768 R InterPro IPR019115; KEGG: fba:FIC_02534 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; hypothetical protein complement(1985908..1986768) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002576 YP_004046458.1 CDS Riean_1797 NC_014738.1 1986851 1988323 R KEGG: fba:FIC_00729 polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(1986851..1988323) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002577 YP_004046459.1 CDS Riean_1798 NC_014738.1 1989210 1990058 D InterPro IPR019115; KEGG: fba:FIC_02534 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; hypothetical protein 1989210..1990058 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002578 YP_004046460.1 CDS Riean_1799 NC_014738.1 1990872 1991249 D KEGG: sli:Slin_4013 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 1990872..1991249 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002579 YP_004046461.1 CDS Riean_1800 NC_014738.1 1991702 1992073 D KEGG: fjo:Fjoh_0188 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated; hypothetical protein 1991702..1992073 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002580 YP_004046462.1 CDS Riean_1801 NC_014738.1 1992186 1993028 D InterPro IPR006121; KEGG: fjo:Fjoh_3064 hypothetical protein; SPTR: MerP protein; PFAM: Protein of unknown function (DUF3347); hypothetical protein 1992186..1993028 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002581 YP_004046463.1 CDS Riean_1802 NC_014738.1 1993029 1993586 D COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018062: IPR000005: IPR018060: IPR006121; KEGG: fjo:Fjoh_0190 helix-turn-helix domain-containing protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; transcriptional regulator, arac family 1993029..1993586 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002582 YP_004046464.1 CDS Riean_1803 NC_014738.1 1993680 1994393 D InterPro IPR006121; KEGG: aas:Aasi_1204 hypothetical protein; PFAM: Heavy metal transport/detoxification protein; SPTR: Putative uncharacterized protein; PFAM: Heavy-metal-associated domain; heavy metal transport/detoxification protein 1993680..1994393 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002583 YP_004046465.1 CDS Riean_1804 NC_014738.1 1994409 1996637 D COGs: COG2132 Putative multicopper oxidase; InterPro IPR002355: IPR011707: IPR001117: IPR011706; KEGG: fjo:Fjoh_0192 multicopper oxidase, type 3; PFAM: multicopper oxidase type 3; multicopper oxidase type 1; multicopper oxidase type 2; SPTR: Copper resistance protein; PFAM: Multicopper oxidase; TIGRFAM: copper-resistance protein, CopA family; multicopper oxidase type 3 1994409..1996637 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002584 YP_004046466.1 CDS Riean_1805 NC_014738.1 1996985 1997326 D InterPro IPR009241; KEGG: chu:CHU_2426 hypothetical protein; PFAM: protein of unknown function DUF891; SPTR: Putative uncharacterized protein; manually curated; PFAM: Phage derived protein Gp49-like (DUF891); hypothetical protein 1996985..1997326 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002585 YP_004046467.1 CDS Riean_1806 NC_014738.1 1997307 1997612 D InterPro IPR001387; KEGG: cch:Cag_1386 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turn-helix; transcriptional regulator, xre family 1997307..1997612 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002586 YP_004046468.1 CDS Riean_1807 NC_014738.1 1997796 1998593 D COGs: COG1230 Co/Zn/Cd efflux system component; InterPro IPR002524: IPR006121; KEGG: sat:SYN_03034 cobalt-zinc-cadmium resistance protein; PFAM: cation efflux protein; SPTR: Cation efflux protein; manually curated; PFAM: Cation efflux family; cation efflux protein 1997796..1998593 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002587 YP_004046469.1 CDS Riean_1808 NC_014738.1 1998774 1999808 D COGs: COG2357 conserved hypothetical protein; InterPro IPR007685; KEGG: mct:MCR_1636 RelA/SpoT domain protein; PFAM: RelA/SpoT domain protein; SPTR: RelA/SpoT domain-containing protein; manually curated; PFAM: Region found in RelA / SpoT proteins; rela/spot domain-containing protein 1998774..1999808 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002588 YP_004046470.1 CDS Riean_1809 NC_014738.1 2000115 2000459 D KEGG: cch:Cag_0913 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Phage derived protein Gp49-like (DUF891); hypothetical protein 2000115..2000459 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002589 YP_004046471.1 CDS Riean_1810 NC_014738.1 2000461 2000787 D InterPro IPR001387; KEGG: cch:Cag_0914 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein 2000461..2000787 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002590 YP_004046472.1 CDS Riean_1811 NC_014738.1 2001010 2001642 D KEGG: lmh:LMHCC_2181 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2001010..2001642 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002591 YP_004046473.1 CDS Riean_1812 NC_014738.1 2001810 2002364 D KEGG: aba:Acid345_2429 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2001810..2002364 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002592 YP_004046474.1 CDS Riean_1813 NC_014738.1 2002579 2003124 D KEGG: phe:Phep_3678 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2002579..2003124 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002593 YP_004046475.1 CDS Riean_1814 NC_014738.1 2003349 2003726 D KEGG: sli:Slin_4013 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2003349..2003726 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002594 YP_004046476.1 CDS Riean_1815 NC_014738.1 2004168 2004617 D COGs: COG3708 conserved hypothetical protein; InterPro IPR010499; KEGG: coc:Coch_1918 transcription activator effector binding; PFAM: transcription activator effector binding; SPTR: Transcription activator effector binding; PFAM: Bacterial transcription activator, effector binding domain; transcription activator effector binding protein 2004168..2004617 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002595 YP_004046477.1 CDS Riean_1816 NC_014738.1 2005439 2005816 D KEGG: saf:SULAZ_0730 cation efflux system protein; SPTR: Cation efflux system protein; hypothetical protein 2005439..2005816 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002596 YP_004046478.1 CDS Riean_1817 NC_014738.1 2006246 2007172 D COGs: COG0338 Site-specific DNA methylase; InterPro IPR002294: IPR012327: IPR012326; KEGG: coc:Coch_2150 DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; SPTR: DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; TIGRFAM: DNA adenine methylase (dam); DNA adenine methylase 2006246..2007172 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002597 YP_004046479.1 CDS Riean_1818 NC_014738.1 2007156 2007995 D InterPro IPR007637: IPR021191; KEGG: tme:Tmel_0307 type II site-specific deoxyribonuclease; PFAM: DpmII restriction endonuclease; PRIAM: Type II site-specific deoxyribonuclease; SPTR: Type-2 restriction enzyme MboI; PFAM: DpnII restriction endonuclease; type ii site-specific deoxyribonuclease 2007156..2007995 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002598 YP_004046480.1 CDS Riean_1819 NC_014738.1 2007996 2008895 D COGs: COG0863 DNA modification methylase; InterPro IPR002052: IPR001091: IPR002941; KEGG: coc:Coch_2152 DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase N-4/N-6 domain protein; SPTR: DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase; DNA methylase n-4/n-6 domain-containing protein 2007996..2008895 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002599 YP_004046481.1 CDS Riean_1820 NC_014738.1 2009052 2009882 D InterPro IPR019115; KEGG: fba:FIC_02534 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; hypothetical protein 2009052..2009882 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002600 YP_004046482.1 CDS Riean_1821 NC_014738.1 2010133 2010951 D COGs: COG2819 hydrolase of the alpha/beta superfamily; InterPro IPR000801; KEGG: mxa:MXAN_6056 esterase; PFAM: esterase; SPTR: Putative esterase; PFAM: Putative esterase; esterase 2010133..2010951 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002601 YP_004046483.1 CDS Riean_1824 NC_014738.1 2014039 2014458 D KEGG: brm:Bmur_0815 lipoprotein; SPTR: Lipoprotein; hypothetical protein 2014039..2014458 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002604 YP_004046484.1 CDS Riean_1825 NC_014738.1 2015292 2016167 D KEGG: fjo:Fjoh_3690 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2015292..2016167 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002605 YP_004046485.1 CDS Riean_1826 NC_014738.1 2016425 2016931 D KEGG: bsu:BSU26480 integral inner membrane protein; SPTR: Uncharacterized protein yrkK; integral inner membrane protein 2016425..2016931 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002606 YP_004046486.1 CDS Riean_1827 NC_014738.1 2017137 2017415 D KEGG: zpr:ZPR_4526 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2017137..2017415 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002607 YP_004046487.1 CDS Riean_1828 NC_014738.1 2017415 2017819 D InterPro IPR002716; KEGG: zpr:ZPR_4525 PilT domain-containing protein; PFAM: PilT protein domain protein; SPTR: PilT domain-containing protein; PFAM: PIN domain; pilt protein domain-containing protein 2017415..2017819 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002608 YP_004046488.1 CDS Riean_1829 NC_014738.1 2017999 2018421 D KEGG: hor:Hore_13670 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2017999..2018421 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002609 YP_004046489.1 CDS Riean_1830 NC_014738.1 2018501 2019310 D KEGG: caa:Caka_0294 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2018501..2019310 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002610 YP_004046490.1 CDS Riean_1831 NC_014738.1 2020067 2020444 D KEGG: sli:Slin_4013 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2020067..2020444 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002611 YP_004046491.1 CDS Riean_1832 NC_014738.1 2020830 2021084 D InterPro IPR006442; KEGG: fps:FP2447 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: prevent-host-death family protein; PFAM: Phd_YefM; TIGRFAM: prevent-host-death family protein; prevent-host-death family protein 2020830..2021084 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002612 YP_004046492.1 CDS Riean_1833 NC_014738.1 2021084 2021341 D COGs: COG4115 conserved hypothetical protein; InterPro IPR009614; KEGG: fps:FP2446 toxin YoeB; PFAM: Addiction module toxin Txe/YoeB; SPTR: Toxin YoeB; TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Plasmid encoded toxin Txe; TIGRFAM: toxin-antitoxin system, toxin component, Txe/YoeB family; addiction module toxin, txe/yoeb family 2021084..2021341 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002613 YP_004046493.1 CDS Riean_1834 NC_014738.1 2021613 2021867 D KEGG: gfo:GFO_0860 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2021613..2021867 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002614 YP_004046494.1 CDS Riean_1835 NC_014738.1 2021857 2022288 D KEGG: gfo:GFO_0859 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2021857..2022288 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002615 YP_004046495.1 CDS Riean_1836 NC_014738.1 2022456 2022914 D KEGG: chu:CHU_1172 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2022456..2022914 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002616 YP_004046496.1 CDS Riean_1837 NC_014738.1 2023157 2023924 D KEGG: lpn:lpg2571 hypothetical protein; SPTR: Predicted protein; hypothetical protein 2023157..2023924 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002617 YP_004046497.1 CDS Riean_1838 NC_014738.1 2023945 2024763 D KEGG: cbf:CLI_0774 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Restriction endonuclease; hypothetical protein 2023945..2024763 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002618 YP_004046498.1 CDS Riean_1839 NC_014738.1 2024990 2025478 D KEGG: api:100167619 similar to sorting nexin 13; SPTR: Cation channel family protein; hypothetical protein 2024990..2025478 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002619 YP_004046499.1 CDS Riean_1840 NC_014738.1 2025739 2026794 D KEGG: dfe:Dfer_1365 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2025739..2026794 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002620 YP_004046500.1 CDS Riean_1841 NC_014738.1 2026794 2027744 D COGs: COG4271 nucleotide-binding protein containing TIR -like domain; KEGG: dfe:Dfer_1366 nucleotide-binding protein containing TIR -like domain-like protein; SPTR: Nucleotide-binding protein containing TIR-like domain-like protein; PFAM: Predicted nucleotide-binding protein containing TIR-like domain; nucleotide-binding protein containing tir -like domain-like protein 2026794..2027744 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002621 YP_004046501.1 CDS Riean_1842 NC_014738.1 2028064 2028612 D KEGG: tet:TTHERM_01046820 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2028064..2028612 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002622 YP_004046502.1 CDS Riean_1843 NC_014738.1 2028851 2029204 D KEGG: pmr:PMI1365 lipoprotein; SPTR: Putative uncharacterized protein; lipoprotein 2028851..2029204 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002623 YP_004046503.1 CDS Riean_1844 NC_014738.1 2029240 2029479 D KEGG: fsu:Fisuc_0877 chromosome segregation and condensation protein ScpA; hypothetical protein 2029240..2029479 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002624 YP_004046504.1 CDS Riean_1845 NC_014738.1 2029919 2030191 D KEGG: cdl:CDR20291_0311 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2029919..2030191 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002625 YP_004046505.1 CDS Riean_1846 NC_014738.1 2030365 2030991 D KEGG: cpi:Cpin_2804 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2030365..2030991 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002626 YP_004046506.1 CDS Riean_1847 NC_014738.1 2030988 2031086 D hypothetical protein 2030988..2031086 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002627 YP_004046507.1 CDS Riean_1848 NC_014738.1 2031098 2031280 R hypothetical protein complement(2031098..2031280) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002628 YP_004046508.1 CDS Riean_1849 NC_014738.1 2031290 2031697 D KEGG: cat:CA2559_09948 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2031290..2031697 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002629 YP_004046509.1 CDS Riean_1850 NC_014738.1 2031701 2032294 D KEGG: cla:Cla_0345 hypothetical protein; SPTR: RloE; hypothetical protein 2031701..2032294 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002630 YP_004046510.1 CDS Riean_1851 NC_014738.1 2032454 2033842 D InterPro IPR011704: IPR003593; KEGG: hmo:HM1_2017 GTPase subunit of restriction endonuclease, putative; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; SPTR: GTPase subunit of restriction endonuclease, putative; PFAM: AAA domain (dynein-related subfamily); ATPase 2032454..2033842 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002631 YP_004046511.1 CDS Riean_1852 NC_014738.1 2033839 2035212 D KEGG: hmo:HM1_2016 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2033839..2035212 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002632 YP_004046512.1 CDS Riean_1853 NC_014738.1 2035223 2035315 D manually curated; hypothetical protein 2035223..2035315 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002633 YP_004046513.1 CDS Riean_1854 NC_014738.1 2035334 2035801 D KEGG: fba:FIC_02534 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2035334..2035801 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002634 YP_004046514.1 CDS Riean_1855 NC_014738.1 2036012 2036470 D KEGG: fba:FIC_00171 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2036012..2036470 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002635 YP_004046515.1 CDS Riean_1856 NC_014738.1 2036530 2037078 D KEGG: fjo:Fjoh_2154 hypothetical protein; SPTR: Hypothetical lipoprotein; hypothetical protein 2036530..2037078 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002636 YP_004046516.1 CDS Riean_1857 NC_014738.1 2037103 2037801 D KEGG: abb:ABBFA_000121 SH3 domain protein; SPTR: Putative uncharacterized protein; hypothetical protein 2037103..2037801 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002637 YP_004046517.1 CDS Riean_1858 NC_014738.1 2037851 2038657 D KEGG: pph:Ppha_0958 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2037851..2038657 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002638 YP_004046518.1 CDS Riean_1859 NC_014738.1 2038674 2039060 D KEGG: pfa:PF11_0057 conserved Plasmodium protein; SPTR: Putative uncharacterized protein; hypothetical protein 2038674..2039060 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002639 YP_004046519.1 CDS Riean_1860 NC_014738.1 2039157 2039795 D KEGG: hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2039157..2039795 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002640 YP_004046520.1 CDS Riean_1861 NC_014738.1 2039822 2040526 D KEGG: fjo:Fjoh_2152 hypothetical protein; SPTR: Hypothetical lipoprotein; hypothetical protein 2039822..2040526 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002641 YP_004046521.1 CDS Riean_1862 NC_014738.1 2040596 2041270 R COGs: COG0740 Protease subunit of ATP-dependent Clp protease; InterPro IPR001907; KEGG: fba:FIC_01464 ATP-dependent Clp protease proteolytic subunit; PFAM: peptidase S14 ClpP; PRIAM: Endopeptidase Clp; SPTR: ATP-dependent Clp protease proteolytic subunit; PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; endopeptidase clp complement(2040596..2041270) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002642 YP_004046522.1 CDS Riean_1863 NC_014738.1 2041350 2043272 R COGs: COG0358 DNA primase; InterPro IPR002694: IPR013264: IPR006171: IPR006154: IPR 006295; KEGG: fba:FIC_01465 DNA primase; PFAM: DNA primase catalytic core domain; TOPRIM domain-containing protein; SMART: Toprim sub domain-containing protein; SPTR: DNA primase; TIGRFAM: DNA primase; PFAM: Toprim domain; DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; TIGRFAM: DNA primase, catalytic core; DNA primase complement(2041350..2043272) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002643 YP_004046523.1 CDS Riean_1864 NC_014738.1 2043288 2043965 R COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: fba:FIC_01630 DedA protein; PFAM: SNARE associated Golgi protein; SPTR: Protein DedA; PFAM: SNARE associated Golgi protein; hypothetical protein complement(2043288..2043965) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002644 YP_004046524.1 CDS Riean_1865 NC_014738.1 2044043 2045173 R COGs: COG1186 Protein chain release factor B; InterPro IPR005139: IPR000352: IPR004374; KEGG: fba:FIC_01629 peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; SPTR: Peptide chain release factor RF2; TIGRFAM: peptide chain release factor 2; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2; peptide chain release factor 2 complement(2044043..2045173) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002645 YP_004046525.1 CDS Riean_1866 NC_014738.1 2045228 2046565 R COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: fba:FIC_01319 NorM-like multidrug efflux protein; PFAM: multi antimicrobial extrusion protein MatE; SPTR: Possible MATE family multi antimicrobial extrusion protein; TIGRFAM: MATE efflux family protein; PFAM: MatE; TIGRFAM: efflux protein, MATE family; mate efflux family protein complement(2045228..2046565) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002646 YP_004046526.1 CDS Riean_1867 NC_014738.1 2046596 2047780 R COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR002078: IPR003593; KEGG: fba:FIC_01320 sigma-54 dependent transcriptional regulator/response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: response regulator receiver; AAA ATPase; SPTR: Sigma-54 dependent transcriptional regulator/response regulator; PFAM: Response regulator receiver domain; Sigma-54 interaction domain; two component sigma-54 specific transcriptional regulator complement(2046596..2047780) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002647 YP_004046527.1 CDS Riean_1868 NC_014738.1 2047817 2048473 R COGs: COG0325 enzyme with a TIM-barrel fold; InterPro IPR001608: IPR011078; KEGG: fba:FIC_01321 FIG018583: protein of unknown function; PFAM: alanine racemase domain protein; SPTR: TIM-barrel fold protein; PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family; alanine racemase complement(2047817..2048473) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002648 YP_004046528.1 CDS Riean_1869 NC_014738.1 2048550 2048921 R COGs: COG1970 Large-conductance mechanosensitive channel; InterPro IPR001185: IPR019823; KEGG: coc:Coch_1956 large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; SPTR: Large conductance mechanosensitive channel protein; TIGRFAM: large conductance mechanosensitive channel protein; PFAM: Large-conductance mechanosensitive channel, MscL; TIGRFAM: large conductance mechanosensitive channel protein; large conductance mechanosensitive channel protein complement(2048550..2048921) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002649 YP_004046529.1 CDS Riean_1870 NC_014738.1 2049062 2049913 R COGs: COG0682 Prolipoprotein diacylglyceryltransferase; InterPro IPR001640; KEGG: fba:FIC_00528 prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; SPTR: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase complement(2049062..2049913) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002650 YP_004046530.1 CDS Riean_1871 NC_014738.1 2049921 2050175 R COGs: COG0759 conserved hypothetical protein; InterPro IPR002696; KEGG: fba:FIC_00529 protein containing DUF37; PFAM: protein of unknown function DUF37; SPTR: UPF0161 protein HMPREF0204_0805; manually curated; PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein YidD; hypothetical protein complement(2049921..2050175) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002651 YP_004046531.1 CDS Riean_1872 NC_014738.1 2050255 2051532 D COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; InterPro IPR003959: IPR003593; KEGG: fba:FIC_00530 ATPase, AAA family; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: Recombination ATPase; PFAM: MgsA AAA+ ATPase C terminal; ATPase family associated with various cellular activities (AAA); AAA ATPase 2050255..2051532 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002652 YP_004046532.1 CDS Riean_1873 NC_014738.1 2051529 2052140 R COGs: COG0009 Putative translation factor (SUA5); InterPro IPR006070: IPR004388; KEGG: fba:FIC_01191 SUA5 YciO YrdC YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SPTR: RNA binding protein; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; translation factor sua5 complement(2051529..2052140) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002653 YP_004046533.1 CDS Riean_1874 NC_014738.1 2052124 2052930 R InterPro IPR002123; KEGG: fba:FIC_00466 hypothetical protein; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: 1-acyl-sn-glycerol-3-phosphate acetyltransferase; PFAM: Acyltransferase; phospholipid/glycerol acyltransferase complement(2052124..2052930) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002654 YP_004046534.1 CDS Riean_1875 NC_014738.1 2052959 2053579 R InterPro IPR000086; KEGG: fba:FIC_00465 hypothetical NUDIX hydrolase YeaB; PFAM: NUDIX hydrolase; SPTR: Hypothetical nudix hydrolase YeaB; PFAM: NUDIX domain; nudix hydrolase complement(2052959..2053579) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002655 YP_004046535.1 CDS Riean_1876 NC_014738.1 2053583 2054275 R COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148: IPR006037; KEGG: par:Psyc_1606 K+ uptake transporter, KtrA subunit; PFAM: TrkA-N domain protein; TrkA-C domain protein; SPTR: K+ uptake transporter, KtrA subunit; PFAM: TrkA-N domain; TrkA-C domain; TrkA domain-containing protein complement(2053583..2054275) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002656 YP_004046536.1 CDS Riean_1877 NC_014738.1 2054283 2056031 R COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; KEGG: par:Psyc_1607 K+ uptake transporter, KtrB subunit; PFAM: cation transporter; PRIAM: H(+)-transporting two-sector ATPase; SPTR: K+ uptake transporter, KtrB subunit; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family; h(+)-transporting two-sector ATPase complement(2054283..2056031) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002657 YP_004046537.1 CDS Riean_1878 NC_014738.1 2056042 2056884 R COGs: COG0287 Prephenate dehydrogenase; InterPro IPR003099; KEGG: fba:FIC_01470 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; PRIAM: Prephenate dehydrogenase; SPTR: Prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; prephenate dehydrogenase complement(2056042..2056884) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002658 YP_004046538.1 CDS Riean_1879 NC_014738.1 2056884 2057255 R KEGG: fba:FIC_01469 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2056884..2057255) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002659 YP_004046539.1 CDS Riean_1880 NC_014738.1 2057255 2058445 R COGs: COG0686 Alanine dehydrogenase; InterPro IPR007886: IPR007698: IPR008143; KEGG: fba:FIC_01468 alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; PRIAM: Alanine dehydrogenase; SPTR: Alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase; alanine dehydrogenase complement(2057255..2058445) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002660 YP_004046540.1 CDS Riean_1881 NC_014738.1 2058495 2058902 R COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: fba:FIC_01467 ATPase YjeE, predicted to have essential role in cell wall biosynthesis; PFAM: Uncharacterised protein family UPF0079, ATPase; SPTR: ATPase YjeE, predicted to have essential role in cell wall biosynthesis; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family; hypothetical protein complement(2058495..2058902) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002661 YP_004046541.1 CDS Riean_1882 NC_014738.1 2059379 2060032 D KEGG: coc:Coch_1983 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2059379..2060032 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002662 YP_004046542.1 CDS Riean_1883 NC_014738.1 2060154 2060987 D InterPro IPR000326; KEGG: fjo:Fjoh_3046 phosphoesterase, PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: PA-phosphatase related phosphoesterase; PFAM: PAP2 superfamily; phosphoesterase pa-phosphatase-like protein 2060154..2060987 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002663 YP_004046543.1 CDS Riean_1884 NC_014738.1 2060974 2062497 D COGs: COG2194 membrane-associated metal-dependent hydrolase; InterPro IPR012549: IPR000917; KEGG: cpi:Cpin_4248 lipid A phosphoethanolamine transferase; PFAM: sulfatase; protein of unknown function DUF1705; SPTR: Putative uncharacterized protein; PFAM: Sulfatase; Domain of unknown function (DUF1705); sulfatase 2060974..2062497 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002664 YP_004046544.1 CDS Riean_1885 NC_014738.1 2062545 2065310 D COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR003439: IPR017871: IPR004602; KEGG: fba:FIC_00918 excinuclease ABC subunit A; PFAM: ABC transporter related; SPTR: Excision endonuclease subunit UvrA; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit; excinuclease ABC, a subunit 2062545..2065310 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002665 YP_004046545.1 CDS Riean_1886 NC_014738.1 2065369 2067546 R COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910; KEGG: fba:FIC_01304 TonB-dependent receptor, plug; PFAM: TonB-dependent receptor plug; SPTR: TonB-dependent receptor, plug; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; tonb-dependent receptor plug complement(2065369..2067546) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002666 YP_004046546.1 CDS Riean_1887 NC_014738.1 2067573 2068382 R COGs: COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; InterPro IPR006218: IPR006269; KEGG: fba:FIC_01303 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; SPTR: 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; 2-dehydro-3-deoxyphosphooctonate aldolase complement(2067573..2068382) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002667 YP_004046547.1 CDS Riean_1888 NC_014738.1 2068531 2069091 R COGs: COG0742 N6-adenine-specific methylase; InterPro IPR004398: IPR002052; KEGG: fba:FIC_00316 methyltransferase; PFAM: Conserved hypothetical protein CHP00095; SPTR: Possible N6-adenine-specific methyltransferase; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family; hypothetical protein complement(2068531..2069091) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002668 YP_004046548.1 CDS Riean_1889 NC_014738.1 2069117 2069833 R KEGG: fba:FIC_00317 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2069117..2069833) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002669 YP_004046549.1 CDS Riean_1890 NC_014738.1 2069977 2070687 D COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002347: IPR002198; KEGG: fba:FIC_00959 short chain dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Possible 3-hydroxybutyrate dehydrogenase; PFAM: short chain dehydrogenase; short-chain dehydrogenase/reductase sdr 2069977..2070687 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002670 YP_004046550.1 CDS Riean_1891 NC_014738.1 2070784 2071530 D COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR014730: IPR000049: IPR012255; KEGG: fba:FIC_00960 electron transfer flavoprotein, beta subunit; PFAM: Electron transfer flavoprotein alpha/beta-subunit; SPTR: Electron transfer flavoprotein beta subunit; PFAM: Electron transfer flavoprotein domain; electron transfer flavoprotein subunits alpha/beta 2070784..2071530 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002671 YP_004046551.1 CDS Riean_1892 NC_014738.1 2071575 2072519 D COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR014730: IPR014731: IPR001308; KEGG: fba:FIC_00961 electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; SPTR: Electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain; electron transfer flavoprotein subunit alpha 2071575..2072519 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002672 YP_004046552.1 CDS Riean_1893 NC_014738.1 2072592 2073188 D COGs: COG1259 conserved hypothetical protein; InterPro IPR003729; KEGG: fba:FIC_00963 hypothetical protein; PFAM: protein of unknown function DUF151; SPTR: Protein of hypothetical function DUF151; PFAM: Uncharacterised ACR, COG1259; hypothetical protein 2072592..2073188 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002673 YP_004046553.1 CDS Riean_1894 NC_014738.1 2073200 2074459 D InterPro IPR004740; KEGG: fba:FIC_00964 xanthosine permease; SPTR: Xanthosine permease; TIGRFAM: nucleoside transporter; PFAM: Nucleoside H+ symporter; TIGRFAM: nucleoside transporter; nucleoside transporter 2073200..2074459 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002674 YP_004046554.1 CDS Riean_1895 NC_014738.1 2074578 2075072 D COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: fba:FIC_01826 RNA polymerase ECF-type sigma factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase, sigma-24 subunit, ecf subfamily 2074578..2075072 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002675 YP_004046555.1 CDS Riean_1896 NC_014738.1 2075065 2075724 D KEGG: fba:FIC_01827 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2075065..2075724 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002676 YP_004046556.1 CDS Riean_1897 NC_014738.1 2075819 2076349 D COGs: COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); InterPro IPR003680; KEGG: lbf:LBF_2069 NADPH dehydrogenase; PFAM: NAD(P)H dehydrogenase (quinone); SPTR: NAD(P)H dehydrogenase (Quinone); PFAM: Flavodoxin-like fold; nad(p)h dehydrogenase (quinone) 2075819..2076349 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002677 YP_004046557.1 CDS Riean_1898 NC_014738.1 2076349 2078202 D COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006036: IPR006153: IPR003148: IPR004771; KEGG: ppd:Ppro_2060 potassium efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; SPTR: CPA2 family potassium:proton (K+:H+) antiporter; TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain; Sodium/hydrogen exchanger family; TIGRFAM: transporter, monovalent cation:proton antiporter-2 (CPA2) family; potassium efflux system protein 2076349..2078202 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002678 YP_004046558.1 CDS Riean_1899 NC_014738.1 2078431 2080299 D COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910: IPR000531; KEGG: fps:FP1457 TonB-dependent outer membrane receptorprecursor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Putative TonB-dependent outer membrane receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; tonb-dependent receptor 2078431..2080299 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002679 YP_004046559.1 CDS Riean_1900 NC_014738.1 2080312 2081358 D KEGG: fjo:Fjoh_0092 hypothetical protein; SPTR: Putative surface layer protein; hypothetical protein 2080312..2081358 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002680 YP_004046560.1 CDS Riean_1901 NC_014738.1 2081359 2082264 R COGs: COG1295 membrane protein; InterPro IPR004664: IPR017039; KEGG: fba:FIC_01541 ribonuclease BN; PFAM: ribonuclease BN; SPTR: Ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN); ribonuclease bn complement(2081359..2082264) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002681 YP_004046561.1 CDS Riean_1902 NC_014738.1 2082313 2082786 D COGs: COG1576 conserved hypothetical protein; InterPro IPR003742; KEGG: fba:FIC_01542 SpoT methyltransferase superfamily protein; PFAM: protein of unknown function DUF163; SPTR: Ribosomal RNA large subunit methyltransferase H; PFAM: Predicted SPOUT methyltransferase; TIGRFAM: rRNA large subunit m3Psi methyltransferase RlmH; hypothetical protein 2082313..2082786 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002682 YP_004046562.1 CDS Riean_1903 NC_014738.1 2082983 2085934 D KEGG: chu:CHU_2460 hypothetical protein; SPTR: SprB; hypothetical protein 2082983..2085934 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002683 YP_004046563.1 CDS Riean_1904 NC_014738.1 2085954 2086478 D KEGG: glo:Glov_3503 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2085954..2086478 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002684 YP_004046564.1 CDS Riean_1905 NC_014738.1 2086551 2087783 R InterPro IPR011701; KEGG: fba:FIC_02356 transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily permease; PFAM: Bacterial protein of unknown function (DUF894); major facilitator superfamily protein complement(2086551..2087783) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002685 YP_004046565.1 CDS Riean_1906 NC_014738.1 2087806 2089308 R InterPro IPR004993: IPR020845; KEGG: fba:FIC_02354 auxin-regulated protein; PFAM: GH3 auxin-responsive promoter; SPTR: GH3 auxin-responsive promoter; PFAM: GH3 auxin-responsive promoter; gh3 auxin-responsive promoter complement(2087806..2089308) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002686 YP_004046566.1 CDS Riean_1907 NC_014738.1 2089465 2090412 D COGs: COG0492 Thioredoxin reductase; InterPro IPR000103: IPR013027: IPR005982; KEGG: fba:FIC_00891 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase; thioredoxin reductase 2089465..2090412 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002687 YP_004046567.1 CDS Riean_1908 NC_014738.1 2090569 2090931 D COGs: COG0239 Integral membrane protein possibly involved in chromosome condensation; InterPro IPR003691; KEGG: fba:FIC_00892 CrcB-like protein; PFAM: Camphor resistance CrcB protein; SPTR: Protein crcB homolog; TIGRFAM: CrcB protein; PFAM: CrcB-like protein; TIGRFAM: crcB protein; camphor resistance protein crcb 2090569..2090931 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002688 YP_004046568.1 CDS Riean_1909 NC_014738.1 2091264 2092421 D COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: rbi:RB2501_14074 hypothetical protein; PFAM: integrase family protein; SPTR: Putative uncharacterized protein; PFAM: Phage integrase family; integrase family protein 2091264..2092421 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002690 YP_004046569.1 CDS Riean_1910 NC_014738.1 2092460 2092642 R InterPro IPR001387; KEGG: pmr:PMI1060 fimbrial operon regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Cryptic phage CTXphi transcriptional repressor RstR; PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein complement(2092460..2092642) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002691 YP_004046570.1 CDS Riean_1911 NC_014738.1 2092642 2092983 R KEGG: fps:FP0798 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2092642..2092983) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002692 YP_004046571.1 CDS Riean_1912 NC_014738.1 2093305 2093916 R KEGG: pfh:PFHG_04404 conserved hypothetical protein; SPTR: Septation ring formation regulator EzrA; hypothetical protein complement(2093305..2093916) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002693 YP_004046572.1 CDS Riean_1913 NC_014738.1 2094282 2094560 D InterPro IPR001387; KEGG: bfs:BF0462 regulatory protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein 2094282..2094560 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002694 YP_004046573.1 CDS Riean_1914 NC_014738.1 2094582 2094929 D KEGG: sun:SUN_1078 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2094582..2094929 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002695 YP_004046574.1 CDS Riean_1915 NC_014738.1 2095171 2095725 R COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: lsg:lse_1590 cell wall hydrolase/autolysin family protein; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; SPTR: Cell wall hydrolase/autolysin family protein; PFAM: N-acetylmuramoyl-L-alanine amidase; cell wall hydrolase/autolysin complement(2095171..2095725) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002696 YP_004046575.1 CDS Riean_1916 NC_014738.1 2095748 2096326 R KEGG: ddi:DDB_G0270444 WD40 repeat-containing protein; SPTR: Probable inactive protein kinase DDB_G0270444; hypothetical protein complement(2095748..2096326) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002697 YP_004046576.1 CDS Riean_1917 NC_014738.1 2096316 2096837 R KEGG: coc:Coch_0862 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: toxin secretion/phage lysis holin; hypothetical protein complement(2096316..2096837) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002698 YP_004046577.1 CDS Riean_1918 NC_014738.1 2096834 2097166 R KEGG: fjo:Fjoh_1911 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2096834..2097166) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002699 YP_004046578.1 CDS Riean_1919 NC_014738.1 2097150 2097473 R KEGG: pfa:PFI1720w Gametocyte-implicated protein (Fragment); SPTR: Gametocyte-implicated protein; hypothetical protein complement(2097150..2097473) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002700 YP_004046579.1 CDS Riean_1920 NC_014738.1 2097500 2101393 R KEGG: gfo:GFO_2425 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: phage minor structural protein, N-terminal region; hypothetical protein complement(2097500..2101393) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002701 YP_004046580.1 CDS Riean_1921 NC_014738.1 2101381 2102484 R KEGG: bwe:BcerKBAB4_5441 carbohydrate-binding CenC domain-containing protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2101381..2102484) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002702 YP_004046581.1 CDS Riean_1922 NC_014738.1 2102481 2102912 R KEGG: pdi:BDI_0894 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2102481..2102912) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002703 YP_004046582.1 CDS Riean_1923 NC_014738.1 2102969 2103262 D COGs: COG4680 conserved hypothetical protein; InterPro IPR018669; KEGG: dfe:Dfer_2131 hypothetical protein; PFAM: Protein of unknown function DUF2136; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2136); hypothetical protein 2102969..2103262 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002704 YP_004046583.1 CDS Riean_1924 NC_014738.1 2103259 2103621 D InterPro IPR001387; KEGG: dfe:Dfer_2132 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turn-helix; helix-turn-helix domain-containing protein 2103259..2103621 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002705 YP_004046584.1 CDS Riean_1925 NC_014738.1 2103624 2107805 R COGs: COG3941 Mu-like prophage protein; InterPro IPR013491; KEGG: pdi:BDI_0893 viral A-type inclusion protein; SPTR: Putative uncharacterized protein; TIGRFAM: phage tape measure protein; TIGRFAM: tape measure domain; phage tape measure protein complement(2103624..2107805) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002706 YP_004046585.1 CDS Riean_1926 NC_014738.1 2107991 2108392 D KEGG: pdi:BDI_0772 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2107991..2108392 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002707 YP_004046586.1 CDS Riean_1927 NC_014738.1 2108717 2109592 R COGs: COG4823 Abortive infection bacteriophage resistance protein; InterPro IPR011664; KEGG: fps:FP0069 hypothetical protein; PFAM: Abi family protein; SPTR: Conserved hypothetical phage AbiD protein; PFAM: Abi-like protein; abi family protein complement(2108717..2109592) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002708 YP_004046587.1 CDS Riean_1928 NC_014738.1 2109831 2110151 D KEGG: hma:pNG6181 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2109831..2110151 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002709 YP_004046588.1 CDS Riean_1929 NC_014738.1 2110154 2110867 D COGs: COG3561 Phage anti-repressor protein; InterPro IPR013557: IPR005039; KEGG: coc:Coch_0879 phage antirepressor protein; PFAM: AntA/AntB antirepressor domain protein; phage antirepressor protein; SPTR: Phage antirepressor protein; PFAM: AntA/AntB antirepressor; Phage antirepressor protein KilAC domain; anta/antb antirepressor domain-containing protein 2110154..2110867 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002710 YP_004046589.1 CDS Riean_1930 NC_014738.1 2111038 2111223 R KEGG: cse:Cseg_0870 preprotein translocase subunit SecA; SPTR: Putative uncharacterized protein; hypothetical protein complement(2111038..2111223) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002711 YP_004046590.1 CDS Riean_1931 NC_014738.1 2111241 2111702 R KEGG: wpi:WPa_0098 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2111241..2111702) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002712 YP_004046591.1 CDS Riean_1932 NC_014738.1 2111782 2112288 R KEGG: dap:Dacet_2258 threonine dehydratase; SPTR: Putative uncharacterized protein; hypothetical protein complement(2111782..2112288) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002713 YP_004046592.1 CDS Riean_1933 NC_014738.1 2112316 2112726 R KEGG: gfo:GFO_2432 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2112316..2112726) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002714 YP_004046593.1 CDS Riean_1934 NC_014738.1 2112723 2113166 R KEGG: gfo:GFO_2433 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2112723..2113166) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002715 YP_004046594.1 CDS Riean_1935 NC_014738.1 2113157 2113480 R KEGG: mbr:MONBRDRAFT_38740 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2113157..2113480) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002716 YP_004046595.1 CDS Riean_1936 NC_014738.1 2113474 2113797 R KEGG: pdi:BDI_0886 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2113474..2113797) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002717 YP_004046596.1 CDS Riean_1937 NC_014738.1 2113797 2114879 R KEGG: gfo:GFO_2436 hypothetical protein; SPTR: Phage major capsid protein E; hypothetical protein complement(2113797..2114879) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002718 YP_004046597.1 CDS Riean_1938 NC_014738.1 2114900 2115265 R KEGG: lsp:Bsph_2123 oligopeptide ABC transporter (oligopeptide-binding protein); SPTR:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-al anineligase; hypothetical protein complement(2114900..2115265) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002719 YP_004046598.1 CDS Riean_1939 NC_014738.1 2115269 2115925 R KEGG: pmo:Pmob_1350 SMC domain-containing protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2115269..2115925) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002720 YP_004046599.1 CDS Riean_1940 NC_014738.1 2116058 2116324 D KEGG: ppp:PHYPADRAFT_99946 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2116058..2116324 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002721 YP_004046600.1 CDS Riean_1941 NC_014738.1 2116337 2116567 D KEGG: msy:MS53_0438 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2116337..2116567 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002722 YP_004046601.1 CDS Riean_1942 NC_014738.1 2116852 2117001 D hypothetical protein 2116852..2117001 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002723 YP_004046602.1 CDS Riean_1943 NC_014738.1 2116983 2117186 D KEGG: zro:ZYRO0G02288g hypothetical protein; hypothetical protein 2116983..2117186 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002724 YP_004046603.1 CDS Riean_1944 NC_014738.1 2117181 2118224 R KEGG: gfo:GFO_2441 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2117181..2118224) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002725 YP_004046604.1 CDS Riean_1945 NC_014738.1 2118224 2119582 R InterPro IPR021145; KEGG: pdi:BDI_0880 hypothetical protein; PFAM: Bacteriophage portal protein, SPP1 Gp6-like; SPTR: Phage portal protein, SPP1 Gp6-like; PFAM: Phage portal protein, SPP1 Gp6-like; TIGRFAM: phage portal protein, SPP1 family; bacteriophage portal protein, spp1 gp6 complement(2118224..2119582) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002726 YP_004046605.1 CDS Riean_1946 NC_014738.1 2119696 2120994 R COGs: COG1783 Phage terminase large subunit; InterPro IPR006437; KEGG: pdi:BDI_0879 phage large subunit terminase; SPTR: Phage large subunit terminase; TIGRFAM: phage terminase, large subunit, PBSX family; PFAM: Phage terminase large subunit; TIGRFAM: phage terminase, large subunit, PBSX family; pbsx family phage terminase large subunit complement(2119696..2120994) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002727 YP_004046606.1 CDS Riean_1947 NC_014738.1 2121089 2121571 R KEGG: enc:ECL_03566 phage terminase small subunit; SPTR: Putative uncharacterized protein; phage terminase small subunit complement(2121089..2121571) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002728 YP_004046607.1 CDS Riean_1948 NC_014738.1 2121561 2122286 R KEGG: pdi:BDI_0877 DNA methylase; SPTR: Putative uncharacterized protein; DNA methylase complement(2121561..2122286) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002729 YP_004046608.1 CDS Riean_1949 NC_014738.1 2122261 2122965 R KEGG: pdi:BDI_0876 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Phosphoadenosine phosphosulfate reductase family; hypothetical protein complement(2122261..2122965) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002730 YP_004046609.1 CDS Riean_1950 NC_014738.1 2122972 2123106 R KEGG: rcu:RCOM_0046320 40S ribosomal protein S8, putative; hypothetical protein complement(2122972..2123106) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002731 YP_004046610.1 CDS Riean_1951 NC_014738.1 2123138 2123596 R KEGG: apa:APP7_0121 carboxy-terminal protease; SPTR: Putative uncharacterized protein; hypothetical protein complement(2123138..2123596) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002732 YP_004046611.1 CDS Riean_1952 NC_014738.1 2123593 2124021 R InterPro IPR008713; KEGG: apa:APP7_0483 protein NinG; PFAM: Lambda NinG family protein; SPTR: Hypothetical bacteriophage protein; PFAM: Bacteriophage Lambda NinG protein; lambda ning family protein complement(2123593..2124021) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002733 YP_004046612.1 CDS Riean_1953 NC_014738.1 2124124 2124438 R KEGG: pdi:BDI_0847 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2693); hypothetical protein complement(2124124..2124438) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002734 YP_004046613.1 CDS Riean_1954 NC_014738.1 2124501 2125250 R COGs: COG3645 Uncharacterized phage-encoded protein; InterPro IPR013557: IPR005039; KEGG: coc:Coch_0879 phage antirepressor protein; PFAM: phage antirepressor protein; AntA/AntB antirepressor domain protein; SPTR: Phage antirepressor protein; PFAM: AntA/AntB antirepressor; Phage antirepressor protein KilAC domain; phage antirepressor protein complement(2124501..2125250) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002735 YP_004046614.1 CDS Riean_1955 NC_014738.1 2125253 2125573 R KEGG: hma:pNG6181 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2125253..2125573) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002736 YP_004046615.1 CDS Riean_1956 NC_014738.1 2126147 2126971 R InterPro IPR001711; KEGG: ecg:E2348C_0995 predicted DNA-damage-inducible protein; SPTR: DNA-damage-inducible protein D; DNA-damage-inducible protein complement(2126147..2126971) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002737 YP_004046616.1 CDS Riean_1957 NC_014738.1 2126979 2127197 R KEGG: cbr:CBG16111 Hypothetical protein CBG16111; SPTR: Putative uncharacterized protein; hypothetical protein complement(2126979..2127197) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002738 YP_004046617.1 CDS Riean_1958 NC_014738.1 2127213 2127392 R KEGG: mmq:MmarC5_0255 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2127213..2127392) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002739 YP_004046618.1 CDS Riean_1959 NC_014738.1 2127422 2127577 R SPTR: Putative uncharacterized protein; hypothetical protein complement(2127422..2127577) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002740 YP_004046619.1 CDS Riean_1960 NC_014738.1 2127761 2128510 R KEGG: brm:Bmur_1603 TPR repeat-containing protein; SPTR: TPR repeat-containing protein; hypothetical protein complement(2127761..2128510) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002741 YP_004046620.1 CDS Riean_1961 NC_014738.1 2128534 2128779 R KEGG: ppf:Pput_3405 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF551); hypothetical protein complement(2128534..2128779) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002742 YP_004046621.1 CDS Riean_1962 NC_014738.1 2128779 2129234 R KEGG: ppg:PputGB1_3470 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2128779..2129234) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002743 YP_004046622.1 CDS Riean_1963 NC_014738.1 2129236 2129532 R InterPro IPR004518; KEGG: sha:SH1788 hypothetical protein; PFAM: MazG nucleotide pyrophosphohydrolase; SPTR: DNA binding protein; PFAM: MazG nucleotide pyrophosphohydrolase domain; mazg nucleotide pyrophosphohydrolase complement(2129236..2129532) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002744 YP_004046623.1 CDS Riean_1964 NC_014738.1 2129538 2129642 R hypothetical protein complement(2129538..2129642) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002745 YP_004046624.1 CDS Riean_1965 NC_014738.1 2129639 2129785 R hypothetical protein complement(2129639..2129785) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002746 YP_004046625.1 CDS Riean_1966 NC_014738.1 2129789 2129956 R KEGG: pfh:PFHG_04941 conserved hypothetical protein; SPTR: (+)-delta-cadinene synthase; hypothetical protein complement(2129789..2129956) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002747 YP_004046626.1 CDS Riean_1967 NC_014738.1 2130177 2130989 R KEGG: gfo:GFO_2454 hypothetical protein; SPTR: Phage-related protein; PFAM: Phosphoadenosine phosphosulfate reductase family; hypothetical protein complement(2130177..2130989) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002748 YP_004046627.1 CDS Riean_1968 NC_014738.1 2131015 2131302 R KEGG: gfo:GFO_2470 DNA-methyltransferase; SPTR: Putative uncharacterized protein; DNA-methyltransferase complement(2131015..2131302) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002749 YP_004046628.1 CDS Riean_1969 NC_014738.1 2131299 2131463 R KEGG: phu:Phum_PHUM250960 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2131299..2131463) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002750 YP_004046629.1 CDS Riean_1970 NC_014738.1 2131412 2131735 R KEGG: osa:4344300 hypothetical protein; SPTR: Os07g0681000 protein; hypothetical protein complement(2131412..2131735) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002751 YP_004046630.1 CDS Riean_1971 NC_014738.1 2131689 2131979 R KEGG: ptm:GSPATT00035610001 hypothetical protein; SPTR: Chromosome undetermined scaffold_153, whole genome shotgun sequence; hypothetical protein complement(2131689..2131979) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002752 YP_004046631.1 CDS Riean_1972 NC_014738.1 2131954 2133009 R KEGG: rle:RL3945 phage DNA primase/helicase; SPTR: Putative uncharacterized protein; hypothetical protein complement(2131954..2133009) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002753 YP_004046632.1 CDS Riean_1973 NC_014738.1 2133022 2133798 R KEGG: tit:Thit_1405 primosome, DnaD subunit; SPTR: Primosome, DnaD subunit; PFAM: Conserved phage C-terminus (Phg_2220_C); TIGRFAM: phage conserved hypothetical protein, C-terminal domain; hypothetical protein complement(2133022..2133798) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002754 YP_004046633.1 CDS Riean_1974 NC_014738.1 2133919 2134098 R hypothetical protein complement(2133919..2134098) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002755 YP_004046634.1 CDS Riean_1975 NC_014738.1 2134102 2134398 R KEGG: pfd:PFDG_01262 hypothetical protein similar to ABC transporter; SPTR: ABC transporter, (Heavy metal transporter family); hypothetical protein complement(2134102..2134398) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002756 YP_004046635.1 CDS Riean_1976 NC_014738.1 2134423 2135181 R InterPro IPR019080; KEGG: pml:ATP_00063 hypothetical protein; PFAM: YqaJ viral recombinase family; SPTR: Putative uncharacterized protein M215R; PFAM: YqaJ-like viral recombinase domain; yqaj viral recombinase family complement(2134423..2135181) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002757 YP_004046636.1 CDS Riean_1977 NC_014738.1 2135181 2135753 R InterPro IPR007499; KEGG: seu:SEQ_0801 essential recombination function protein; PFAM: ERF family protein; SPTR: Putative essential recombination function protein; PFAM: ERF superfamily; erf family protein complement(2135181..2135753) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002758 YP_004046637.1 CDS Riean_1978 NC_014738.1 2135868 2136053 R hypothetical protein complement(2135868..2136053) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002759 YP_004046638.1 CDS Riean_1979 NC_014738.1 2136150 2136464 R KEGG: tva:TVAG_419420 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2136150..2136464) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002760 YP_004046639.1 CDS Riean_1980 NC_014738.1 2136520 2136729 R KEGG: ath:AT3G56230 speckle-type POZ protein-related; hypothetical protein complement(2136520..2136729) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002761 YP_004046640.1 CDS Riean_1981 NC_014738.1 2136726 2136905 R KEGG: eli:ELI_03690 ATP-dependent Lon protease; SPTR: ATP-dependent Lon protease; ATP-dependent lon protease complement(2136726..2136905) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002762 YP_004046641.1 CDS Riean_1982 NC_014738.1 2137025 2137591 D KEGG: bth:BT_0841 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2137025..2137591 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002763 YP_004046642.1 CDS Riean_1983 NC_014738.1 2137512 2137820 R KEGG: mcp:MCAP_0265 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein complement(2137512..2137820) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002764 YP_004046643.1 CDS Riean_1984 NC_014738.1 2137861 2138619 D KEGG: pdi:BDI_0844 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2137861..2138619 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002765 YP_004046644.1 CDS Riean_1985 NC_014738.1 2138634 2139086 D KEGG: mvo:Mvol_0293 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2138634..2139086 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002766 YP_004046645.1 CDS Riean_1986 NC_014738.1 2139083 2139352 D KEGG: fba:FIC_01930 dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: Similar to trehalose-6-phosphate phosphorylase; hypothetical protein 2139083..2139352 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002767 YP_004046646.1 CDS Riean_1987 NC_014738.1 2139933 2140943 D KEGG: coc:Coch_1075 hypothetical protein; SPTR: Putative toxin-antitoxin system protein; hypothetical protein 2139933..2140943 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002768 YP_004046647.1 CDS Riean_1988 NC_014738.1 2141837 2142526 D KEGG: pfd:PFDG_03865 predicted protein; SPTR: Putative uncharacterized protein; hypothetical protein 2141837..2142526 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002769 YP_004046648.1 CDS Riean_1989 NC_014738.1 2142532 2143278 D KEGG: coc:Coch_1872 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2142532..2143278 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002770 YP_004046649.1 CDS Riean_1990 NC_014738.1 2143315 2144076 D KEGG: fba:FIC_01038 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2143315..2144076 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002771 YP_004046650.1 CDS Riean_1991 NC_014738.1 2144113 2144667 R COGs: COG0233 Ribosome recycling factor; InterPro IPR002661: IPR015998; KEGG: fba:FIC_01287 ribosome recycling factor; PFAM: ribosome recycling factor; SPTR: Ribosome-recycling factor; TIGRFAM: ribosome recycling factor; PFAM: Ribosome recycling factor; TIGRFAM: ribosome recycling factor; ribosome recycling factor complement(2144113..2144667) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002772 YP_004046651.1 CDS Riean_1992 NC_014738.1 2144705 2145412 R COGs: COG0528 Uridylate kinase; InterPro IPR001048: IPR011817: IPR015963; KEGG: fba:FIC_01286 uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: UMP kinase; SPTR: UMP kinase; TIGRFAM: uridylate kinase; PFAM: Amino acid kinase family; TIGRFAM: uridylate kinase; uridylate kinase complement(2144705..2145412) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002773 YP_004046652.1 CDS Riean_1993 NC_014738.1 2145598 2146317 D COGs: COG0130 Pseudouridine synthase; InterPro IPR002501: IPR014780; KEGG: fba:FIC_00938 tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; SPTR: Probable tRNA pseudouridine synthase; TIGRFAM: tRNA pseudouridine synthase B; PFAM: TruB family pseudouridylate synthase (N terminal domain); TIGRFAM: tRNA pseudouridine 55 synthase; tRNA pseudouridine synthase b 2145598..2146317 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002774 YP_004046653.1 CDS Riean_1994 NC_014738.1 2146322 2146882 D KEGG: ddi:DDB_G0276325 hypothetical protein; SPTR: Outer membrane fimbrial usher protein; hypothetical protein 2146322..2146882 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002775 YP_004046654.1 CDS Riean_1995 NC_014738.1 2146883 2147608 D COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR002942: IPR006145: IPR018496: IPR000748; KEGG: fba:FIC_00939 pseudouridine synthase, Rsu; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase; ribosomal large subunit pseudouridine synthase f 2146883..2147608 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002776 YP_004046655.1 CDS Riean_1996 NC_014738.1 2147605 2148060 R InterPro IPR006674; KEGG: cpi:Cpin_6571 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SPTR: Metal dependent phosphohydrolase; metal-dependent phosphohydrolase hd sub domain complement(2147605..2148060) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002777 YP_004046656.1 CDS Riean_1997 NC_014738.1 2148109 2148495 R COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: phe:Phep_2501 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: Long-chain acyl-CoA thioester hydrolase family protein; PFAM: Thioesterase superfamily; thioesterase superfamily protein complement(2148109..2148495) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002778 YP_004046657.1 CDS Riean_1998 NC_014738.1 2148543 2150216 R COGs: COG0531 Amino acid transporter; InterPro IPR004841: IPR002293; KEGG: fba:FIC_00996 amino acid permease-associated region; PFAM: amino acid permease-associated region; SPTR: Amino aciD-transporting permease; PFAM: Amino acid permease; TC 2.A.3; amino acid/polyamine/organocation transporter, apc superfamily complement(2148543..2150216) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002779 YP_004046658.1 CDS Riean_1999 NC_014738.1 2150341 2153859 D KEGG: fba:FIC_00997 hypothetical protein; SPTR: Putative uncharacterized protein; hypothetical protein 2150341..2153859 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002780 YP_004046659.1 CDS Riean_2000 NC_014738.1 2153893 2154585 D COGs: COG3340 Peptidase E; InterPro IPR005320; KEGG: fba:FIC_00534 peptidase E; PFAM: peptidase S51 dipeptidase E; PRIAM: Dipeptidase E; SPTR: Dipeptidase E; PFAM: Peptidase family S51; dipeptidase e 2153893..2154585 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002781 YP_004046660.1 CDS Riean_2001 NC_014738.1 2154596 2155003 R COGs: COG0824 thioesterase; InterPro IPR006683: IPR006684; KEGG: fba:FIC_00535 4-hydroxybenzoyl-CoA thioesterase family active site; PFAM: thioesterase superfamily protein; SPTR: 4-hydroxybenzoyl-CoA thioesterase family active site; PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family; thioesterase superfamily protein complement(2154596..2155003) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002782 Riean_R0001 tRNA Riean_R0001 NC_014738.1 172483 172557 D tRNA-Arg 172483..172557 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000896 Riean_R0002 tRNA Riean_R0002 NC_014738.1 282841 282917 D tRNA-Ala 282841..282917 Riemerella anatipestifer ATCC 11845 = DSM 15868 10000989 Riean_R0003 tRNA Riean_R0003 NC_014738.1 416722 416798 R tRNA-Arg complement(416722..416798) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001122 Riean_R0004 tRNA Riean_R0004 NC_014738.1 459562 459637 D tRNA-Met 459562..459637 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001159 Riean_R0005 tRNA Riean_R0005 NC_014738.1 486457 486543 D tRNA-Ser 486457..486543 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001183 Riean_R0006 tRNA Riean_R0006 NC_014738.1 517840 517916 R tRNA-Asp complement(517840..517916) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001214 Riean_R0007 tRNA Riean_R0007 NC_014738.1 517937 518010 R tRNA-Asp complement(517937..518010) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001215 Riean_R0008 tRNA Riean_R0008 NC_014738.1 530000 530075 R tRNA-Lys complement(530000..530075) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001230 Riean_R0009 tRNA Riean_R0009 NC_014738.1 530093 530176 R tRNA-Leu complement(530093..530176) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001231 Riean_R0010 tRNA Riean_R0010 NC_014738.1 530203 530278 R tRNA-Lys complement(530203..530278) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001232 Riean_R0011 tRNA Riean_R0011 NC_014738.1 577745 577821 R tRNA-Met complement(577745..577821) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001283 Riean_R0012 tRNA Riean_R0012 NC_014738.1 602381 602454 R tRNA-Arg complement(602381..602454) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001304 Riean_R0013 tRNA Riean_R0013 NC_014738.1 602489 602566 R tRNA-Pro complement(602489..602566) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001305 Riean_R0014 tRNA Riean_R0014 NC_014738.1 602583 602670 R tRNA-Ser complement(602583..602670) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001306 Riean_R0015 tRNA Riean_R0015 NC_014738.1 626918 626994 D tRNA-Met 626918..626994 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001331 Riean_R0016 tRNA Riean_R0016 NC_014738.1 669850 669925 D tRNA-Phe 669850..669925 Riemerella anatipestifer ATCC 11845 = DSM 15868 10001366 Riean_R0020 tRNA Riean_R0020 NC_014738.1 892681 892757 R tRNA-Ala complement(892681..892757) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001568 Riean_R0021 tRNA Riean_R0021 NC_014738.1 892771 892847 R tRNA-Ile complement(892771..892847) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001569 Riean_R0023 tRNA Riean_R0023 NC_014738.1 900859 900932 R tRNA-Cys complement(900859..900932) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001576 Riean_R0024 tRNA Riean_R0024 NC_014738.1 961435 961506 R tRNA-Glu complement(961435..961506) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001622 Riean_R0025 tRNA Riean_R0025 NC_014738.1 961849 961923 R tRNA-Glu complement(961849..961923) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001624 Riean_R0026 tRNA Riean_R0026 NC_014738.1 1025738 1025814 R tRNA-His complement(1025738..1025814) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001698 Riean_R0030 tRNA Riean_R0030 NC_014738.1 1157160 1157236 R tRNA-Ala complement(1157160..1157236) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001814 Riean_R0031 tRNA Riean_R0031 NC_014738.1 1157250 1157326 R tRNA-Ile complement(1157250..1157326) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001815 Riean_R0033 tRNA Riean_R0033 NC_014738.1 1367924 1368000 R tRNA-Asn complement(1367924..1368000) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002009 Riean_R0034 tRNA Riean_R0034 NC_014738.1 1420300 1420381 D tRNA-Leu 1420300..1420381 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002059 Riean_R0035 tRNA Riean_R0035 NC_014738.1 1420388 1420460 D tRNA-Gly 1420388..1420460 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002060 Riean_R0036 tRNA Riean_R0036 NC_014738.1 1420471 1420557 D tRNA-Leu 1420471..1420557 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002061 Riean_R0037 tRNA Riean_R0037 NC_014738.1 1422368 1422445 R tRNA-Val complement(1422368..1422445) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002063 Riean_R0038 tRNA Riean_R0038 NC_014738.1 1422449 1422526 R tRNA-Val complement(1422449..1422526) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002064 Riean_R0039 tRNA Riean_R0039 NC_014738.1 1638706 1638779 D tRNA-Thr 1638706..1638779 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002273 Riean_R0040 tRNA Riean_R0040 NC_014738.1 1638796 1638878 D tRNA-Tyr 1638796..1638878 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002274 Riean_R0041 tRNA Riean_R0041 NC_014738.1 1638973 1639048 D tRNA-Gly 1638973..1639048 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002275 Riean_R0042 tRNA Riean_R0042 NC_014738.1 1639087 1639158 D tRNA-Thr 1639087..1639158 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002276 Riean_R0043 tRNA Riean_R0043 NC_014738.1 1641721 1641794 D tRNA-Trp 1641721..1641794 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002279 Riean_R0045 tRNA Riean_R0045 NC_014738.1 1679121 1679197 D tRNA-Ile 1679121..1679197 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002315 Riean_R0046 tRNA Riean_R0046 NC_014738.1 1679211 1679287 D tRNA-Ala 1679211..1679287 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002316 Riean_R0049 tRNA Riean_R0049 NC_014738.1 1726470 1726541 R tRNA-Gln complement(1726470..1726541) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002346 Riean_R0051 tRNA Riean_R0051 NC_014738.1 1891223 1891304 R tRNA-Leu complement(1891223..1891304) Riemerella anatipestifer ATCC 11845 = DSM 15868 10002499 Riean_R0052 tRNA Riean_R0052 NC_014738.1 2091058 2091145 D tRNA-Ser 2091058..2091145 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002689 Riean_R0018 rRNA Riean_R0018 NC_014738.1 889556 889663 R 5S ribosomal RNA complement(889556..889663) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001566 Riean_R0019 rRNA Riean_R0019 NC_014738.1 889773 892520 R 23S ribosomal RNA complement(889773..892520) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001567 Riean_R0022 rRNA Riean_R0022 NC_014738.1 893051 894555 R 16S ribosomal RNA complement(893051..894555) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001570 Riean_R0028 rRNA Riean_R0028 NC_014738.1 1154033 1154140 R 5S ribosomal RNA complement(1154033..1154140) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001812 Riean_R0029 rRNA Riean_R0029 NC_014738.1 1154252 1156999 R 23S ribosomal RNA complement(1154252..1156999) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001813 Riean_R0032 rRNA Riean_R0032 NC_014738.1 1157530 1159034 R 16S ribosomal RNA complement(1157530..1159034) Riemerella anatipestifer ATCC 11845 = DSM 15868 10001816 Riean_R0044 rRNA Riean_R0044 NC_014738.1 1677413 1678917 D 16S ribosomal RNA 1677413..1678917 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002314 Riean_R0047 rRNA Riean_R0047 NC_014738.1 1679448 1682195 D 23S ribosomal RNA 1679448..1682195 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002317 Riean_R0048 rRNA Riean_R0048 NC_014738.1 1682305 1682412 D 5S ribosomal RNA 1682305..1682412 Riemerella anatipestifer ATCC 11845 = DSM 15868 10002318