-- dump date 20140620_034550 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_001494105.1 157827863 5648780 1..822 1 NC_009882.1 COG1806 Uncharacterized protein conserved in bacteria; hypothetical protein 822 5648780 A1G_00005 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494105.1 1 D 392021 CDS YP_001494106.1 157827864 5648254 1082..1399 1 NC_009882.1 COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin 1399 5648254 A1G_00010 Rickettsia rickettsii str. 'Sheila Smith' thioredoxin YP_001494106.1 1082 D 392021 CDS YP_001494107.1 157827865 5648255 1409..2158 1 NC_009882.1 COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component; O-antigen export system ATP-binding protein RfbE 2158 5648255 A1G_00015 Rickettsia rickettsii str. 'Sheila Smith' O-antigen export system ATP-binding protein RfbE YP_001494107.1 1409 D 392021 CDS YP_001494108.1 157827866 5648256 2159..2935 1 NC_009882.1 COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component; O-antigen export system permease protein RfbA 2935 5648256 A1G_00020 Rickettsia rickettsii str. 'Sheila Smith' O-antigen export system permease protein RfbA YP_001494108.1 2159 D 392021 CDS YP_001494109.1 157827867 5648257 2932..6033 1 NC_009882.1 undetermined function; putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase 6033 5648257 A1G_00025 Rickettsia rickettsii str. 'Sheila Smith' putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase YP_001494109.1 2932 D 392021 CDS YP_001494110.1 157827868 5648258 complement(6077..6316) 1 NC_009882.1 COG2337 Growth inhibitor; hypothetical protein 6316 5648258 A1G_00030 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494110.1 6077 R 392021 CDS YP_001494111.1 157827869 5648259 complement(6443..7237) 1 NC_009882.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 7237 5648259 A1G_00035 Rickettsia rickettsii str. 'Sheila Smith' UDP-N-acetylglucosamine acyltransferase YP_001494111.1 6443 R 392021 CDS YP_001494112.1 157827870 5648260 complement(7244..7681) 1 NC_009882.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 7681 fabZ 5648260 fabZ Rickettsia rickettsii str. 'Sheila Smith' (3R)-hydroxymyristoyl-ACP dehydratase YP_001494112.1 7244 R 392021 CDS YP_001494113.1 157827871 5648261 complement(7877..8914) 1 NC_009882.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 8914 lpxD 5648261 lpxD Rickettsia rickettsii str. 'Sheila Smith' UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_001494113.1 7877 R 392021 CDS YP_001494114.1 157827872 5648262 9243..9425 1 NC_009882.1 hypothetical protein 9425 5648262 A1G_00050 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494114.1 9243 D 392021 CDS YP_001494115.1 157827873 5648263 9627..9986 1 NC_009882.1 COG1752 Predicted esterase of the alpha-beta hydrolase superfamily; alpha/beta hydrolase superfamily esterase 9986 5648263 A1G_00055 Rickettsia rickettsii str. 'Sheila Smith' alpha/beta hydrolase superfamily esterase YP_001494115.1 9627 D 392021 CDS YP_001494116.1 157827874 5648484 9965..10195 1 NC_009882.1 COG1752 Predicted esterase of the alpha-beta hydrolase superfamily; alpha/beta hydrolase superfamily esterase 10195 5648484 A1G_00060 Rickettsia rickettsii str. 'Sheila Smith' alpha/beta hydrolase superfamily esterase YP_001494116.1 9965 D 392021 CDS YP_001494117.1 157827875 5648485 complement(11497..11646) 1 NC_009882.1 COG1196 Chromosome segregation ATPases; ankyrin repeat-containing protein 11646 5648485 A1G_00065 Rickettsia rickettsii str. 'Sheila Smith' ankyrin repeat-containing protein YP_001494117.1 11497 R 392021 CDS YP_001494118.1 157827876 5648486 complement(11702..11968) 1 NC_009882.1 ankyrin repeat-containing protein 11968 5648486 A1G_00070 Rickettsia rickettsii str. 'Sheila Smith' ankyrin repeat-containing protein YP_001494118.1 11702 R 392021 CDS YP_001494119.1 157827877 5648487 complement(12022..12474) 1 NC_009882.1 ankyrin repeat-containing protein 12474 5648487 A1G_00075 Rickettsia rickettsii str. 'Sheila Smith' ankyrin repeat-containing protein YP_001494119.1 12022 R 392021 CDS YP_001494120.1 157827878 5648489 12813..13808 1 NC_009882.1 COG0042 tRNA-dihydrouridine synthase; nifR3-like protein 13808 5648489 A1G_00080 Rickettsia rickettsii str. 'Sheila Smith' nifR3-like protein YP_001494120.1 12813 D 392021 CDS YP_001494121.1 157827879 5648490 13826..14749 1 NC_009882.1 hypothetical protein 14749 5648490 A1G_00085 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494121.1 13826 D 392021 CDS YP_001494122.1 157827880 5648491 14835..14990 1 NC_009882.1 hypothetical protein 14990 5648491 A1G_00090 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494122.1 14835 D 392021 CDS YP_001494123.1 157827881 5648492 complement(14998..15525) 1 NC_009882.1 COG0802 Predicted ATPase or kinase; hypothetical protein 15525 5648492 A1G_00095 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494123.1 14998 R 392021 CDS YP_001494124.1 157827882 5647643 complement(15513..16217) 1 NC_009882.1 COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; zinc/manganese ABC transporter substrate binding protein 16217 5647643 A1G_00100 Rickettsia rickettsii str. 'Sheila Smith' zinc/manganese ABC transporter substrate binding protein YP_001494124.1 15513 R 392021 CDS YP_001494125.1 157827883 5647644 complement(16463..17773) 1 NC_009882.1 COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; poly(A) polymerase 17773 5647644 A1G_00105 Rickettsia rickettsii str. 'Sheila Smith' poly(A) polymerase YP_001494125.1 16463 R 392021 CDS YP_001494126.1 157827884 5647645 complement(18263..18487) 1 NC_009882.1 hypothetical protein 18487 5647645 A1G_00110 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494126.1 18263 R 392021 CDS YP_001494127.1 157827885 5647646 complement(18572..19300) 1 NC_009882.1 COG0658 Predicted membrane metal-binding protein; hypothetical protein 19300 5647646 A1G_00115 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494127.1 18572 R 392021 CDS YP_001494128.1 157827886 5647647 complement(19321..19467) 1 NC_009882.1 hypothetical protein 19467 5647647 A1G_00120 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494128.1 19321 R 392021 CDS YP_001494129.1 157827887 5647648 19665..19781 1 NC_009882.1 hypothetical protein 19781 5647648 A1G_00125 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494129.1 19665 D 392021 CDS YP_001494130.1 157827888 5647649 20197..25797 1 NC_009882.1 cell surface antigen 25797 5647649 A1G_00130 Rickettsia rickettsii str. 'Sheila Smith' cell surface antigen YP_001494130.1 20197 D 392021 CDS YP_001494131.1 157827889 5647651 26053..26181 1 NC_009882.1 hypothetical protein 26181 5647651 A1G_00135 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494131.1 26053 D 392021 CDS YP_001494132.1 157827890 5647633 26543..26668 1 NC_009882.1 hypothetical protein 26668 5647633 A1G_00140 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494132.1 26543 D 392021 CDS YP_001494133.1 157827891 5647634 27113..27853 1 NC_009882.1 COG0740 Protease subunit of ATP-dependent Clp proteases; hypothetical protein 27853 5647634 A1G_00145 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494133.1 27113 D 392021 CDS YP_001494134.1 157827892 5647635 27820..28053 1 NC_009882.1 hypothetical protein 28053 5647635 A1G_00150 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494134.1 27820 D 392021 CDS YP_001494135.1 157827893 5647636 28194..28376 1 NC_009882.1 COG0457 FOG: TPR repeat; hypothetical protein 28376 5647636 A1G_00155 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494135.1 28194 D 392021 CDS YP_001494136.1 157827894 5647637 complement(28708..29202) 1 NC_009882.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 29202 5647637 A1G_00160 Rickettsia rickettsii str. 'Sheila Smith' F0F1 ATP synthase subunit B YP_001494136.1 28708 R 392021 CDS YP_001494137.1 157827895 5647638 complement(29202..29675) 1 NC_009882.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.; F0F1 ATP synthase subunit B' 29675 5647638 A1G_00165 Rickettsia rickettsii str. 'Sheila Smith' F0F1 ATP synthase subunit B' YP_001494137.1 29202 R 392021 CDS YP_001494138.1 157827896 5647639 complement(29694..29912) 1 NC_009882.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 29912 5647639 A1G_00170 Rickettsia rickettsii str. 'Sheila Smith' F0F1 ATP synthase subunit C YP_001494138.1 29694 R 392021 CDS YP_001494139.1 157827897 5647640 complement(30114..30842) 1 NC_009882.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 30842 5647640 A1G_00175 Rickettsia rickettsii str. 'Sheila Smith' F0F1 ATP synthase subunit A YP_001494139.1 30114 R 392021 CDS YP_001494140.1 157827898 5647641 complement(30847..31143) 1 NC_009882.1 COG5336 Uncharacterized protein conserved in bacteria; hypothetical protein 31143 5647641 A1G_00180 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494140.1 30847 R 392021 CDS YP_001494141.1 157827899 5647642 complement(31221..32054) 1 NC_009882.1 COG1651 Protein-disulfide isomerase; hypothetical protein 32054 5647642 A1G_00185 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494141.1 31221 R 392021 CDS YP_001494142.1 157827900 5648513 32218..32739 1 NC_009882.1 COG1329 Transcriptional regulators, similar to M. xanthus CarD; hypothetical protein 32739 5648513 A1G_00190 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494142.1 32218 D 392021 CDS YP_001494143.1 157827901 5648514 complement(32986..34590) 1 NC_009882.1 COG0500 SAM-dependent methyltransferases; hypothetical protein 34590 5648514 A1G_00195 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494143.1 32986 R 392021 CDS YP_001494144.1 157827902 5648515 34713..34922 1 NC_009882.1 recombination protein F 34922 recF 5648515 recF Rickettsia rickettsii str. 'Sheila Smith' recombination protein F YP_001494144.1 34713 D 392021 CDS YP_001494145.1 157827903 5648516 complement(35019..36101) 1 NC_009882.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 36101 recF 5648516 recF Rickettsia rickettsii str. 'Sheila Smith' recombination protein F YP_001494145.1 35019 R 392021 CDS YP_001494146.1 157827904 5648517 complement(36125..36427) 1 NC_009882.1 COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C; hypothetical protein 36427 5648517 A1G_00210 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494146.1 36125 R 392021 CDS YP_001494147.1 157827905 5648518 complement(36763..37257) 1 NC_009882.1 COG0262 Dihydrofolate reductase; dihydrofolate reductase 37257 5648518 A1G_00215 Rickettsia rickettsii str. 'Sheila Smith' dihydrofolate reductase YP_001494147.1 36763 R 392021 CDS YP_001494148.1 157827906 5648519 complement(37254..37346) 1 NC_009882.1 hypothetical protein 37346 5648519 A1G_00220 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494148.1 37254 R 392021 CDS YP_001494149.1 157827907 5648520 complement(37589..38545) 1 NC_009882.1 COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; folate synthesis bifunctional protein 38545 5648520 A1G_00225 Rickettsia rickettsii str. 'Sheila Smith' folate synthesis bifunctional protein YP_001494149.1 37589 R 392021 CDS YP_001494150.1 157827908 5648521 complement(39004..39663) 1 NC_009882.1 hypothetical protein 39663 5648521 A1G_00230 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494150.1 39004 R 392021 CDS YP_001494151.1 157827909 5648522 complement(39745..40044) 1 NC_009882.1 hypothetical protein 40044 5648522 A1G_00235 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494151.1 39745 R 392021 CDS YP_001494152.1 157827910 5648110 complement(40212..40607) 1 NC_009882.1 hypothetical protein 40607 5648110 A1G_00240 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494152.1 40212 R 392021 CDS YP_001494153.1 157827911 5648111 complement(41031..41303) 1 NC_009882.1 hypothetical protein 41303 5648111 A1G_00245 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494153.1 41031 R 392021 CDS YP_001494154.1 157827912 5648112 complement(41679..41966) 1 NC_009882.1 hypothetical protein 41966 5648112 A1G_00250 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494154.1 41679 R 392021 CDS YP_001494155.1 157827913 5648113 complement(42139..42315) 1 NC_009882.1 hypothetical protein 42315 5648113 A1G_00255 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494155.1 42139 R 392021 CDS YP_001494156.1 157827914 5648114 complement(42305..42460) 1 NC_009882.1 hypothetical protein 42460 5648114 A1G_00260 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494156.1 42305 R 392021 CDS YP_001494157.1 157827915 5648115 42624..43199 1 NC_009882.1 COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems; Sco2 protein precursor 43199 5648115 A1G_00265 Rickettsia rickettsii str. 'Sheila Smith' Sco2 protein precursor YP_001494157.1 42624 D 392021 CDS YP_001494158.1 157827916 5648116 complement(43210..43779) 1 NC_009882.1 COG1678 Putative transcriptional regulator; hypothetical protein 43779 5648116 A1G_00270 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494158.1 43210 R 392021 CDS YP_001494159.1 157827917 5648117 43845..44513 1 NC_009882.1 COG1286 Uncharacterized membrane protein, required for colicin V production; hypothetical protein 44513 5648117 A1G_00275 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494159.1 43845 D 392021 CDS YP_001494160.1 157827918 5648118 complement(44904..45227) 1 NC_009882.1 hypothetical protein 45227 5648118 A1G_00280 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494160.1 44904 R 392021 CDS YP_001494161.1 157827919 5648119 45075..45572 1 NC_009882.1 hypothetical protein 45572 5648119 A1G_00285 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494161.1 45075 D 392021 CDS YP_001494162.1 157827920 5648152 45538..45873 1 NC_009882.1 hypothetical protein 45873 5648152 A1G_00290 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494162.1 45538 D 392021 CDS YP_001494163.1 157827921 5648153 45976..46317 1 NC_009882.1 cell surface antigen-like protein Sca10 46317 5648153 A1G_00295 Rickettsia rickettsii str. 'Sheila Smith' cell surface antigen-like protein Sca10 YP_001494163.1 45976 D 392021 CDS YP_001494164.1 157827922 5648154 complement(46551..47873) 1 NC_009882.1 hypothetical protein 47873 5648154 A1G_00300 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494164.1 46551 R 392021 CDS YP_001494165.1 157827923 5648155 complement(48035..48385) 1 NC_009882.1 hypothetical protein 48385 5648155 A1G_00305 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494165.1 48035 R 392021 CDS YP_001494166.1 157827924 5648156 complement(48367..48477) 1 NC_009882.1 hypothetical protein 48477 5648156 A1G_00310 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494166.1 48367 R 392021 CDS YP_001494167.1 157827925 5648157 complement(48542..48706) 1 NC_009882.1 hypothetical protein 48706 5648157 A1G_00315 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494167.1 48542 R 392021 CDS YP_001494168.1 157827926 5648158 complement(49192..49389) 1 NC_009882.1 hypothetical protein 49389 5648158 A1G_00330 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494168.1 49192 R 392021 CDS YP_001494169.1 157827927 5648159 complement(49422..49628) 1 NC_009882.1 hypothetical protein 49628 5648159 A1G_00335 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494169.1 49422 R 392021 CDS YP_001494170.1 157827928 5648160 complement(50702..50770) 1 NC_009882.1 hypothetical protein 50770 5648160 A1G_00350 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494170.1 50702 R 392021 CDS YP_001494171.1 157827929 5648161 complement(50842..51012) 1 NC_009882.1 hypothetical protein 51012 5648161 A1G_00355 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494171.1 50842 R 392021 CDS YP_001494172.1 157827930 5648173 52570..55143 1 NC_009882.1 COG0542 ATPases with chaperone activity, ATP-binding subunit; clpB protein 55143 5648173 A1G_00380 Rickettsia rickettsii str. 'Sheila Smith' clpB protein YP_001494172.1 52570 D 392021 CDS YP_001494173.1 157827931 5648174 complement(55374..55865) 1 NC_009882.1 hypothetical protein 55865 5648174 A1G_00385 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494173.1 55374 R 392021 CDS YP_001494174.1 157827932 5648175 complement(55992..57026) 1 NC_009882.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 57026 5648175 A1G_00390 Rickettsia rickettsii str. 'Sheila Smith' putative DNA-binding/iron metalloprotein/AP endonuclease YP_001494174.1 55992 R 392021 CDS YP_001494175.1 157827933 5648176 complement(57210..58403) 1 NC_009882.1 COG1398 Fatty-acid desaturase; acyl-CoA desaturase 1 58403 5648176 A1G_00395 Rickettsia rickettsii str. 'Sheila Smith' acyl-CoA desaturase 1 YP_001494175.1 57210 R 392021 CDS YP_001494176.1 157827934 5648177 complement(58682..58861) 1 NC_009882.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; hypothetical protein 58861 5648177 A1G_00400 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494176.1 58682 R 392021 CDS YP_001494177.1 157827935 5648178 59348..59713 1 NC_009882.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 59713 rpsF 5648178 rpsF Rickettsia rickettsii str. 'Sheila Smith' 30S ribosomal protein S6 YP_001494177.1 59348 D 392021 CDS YP_001494178.1 157827936 5648179 59738..60025 1 NC_009882.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 60025 rpsR 5648179 rpsR Rickettsia rickettsii str. 'Sheila Smith' 30S ribosomal protein S18 YP_001494178.1 59738 D 392021 CDS YP_001494179.1 157827937 5648180 60037..60552 1 NC_009882.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 60552 rplI 5648180 rplI Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L9 YP_001494179.1 60037 D 392021 CDS YP_001494180.1 157827938 5648181 60854..62290 1 NC_009882.1 COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; cell cycle protein MesJ 62290 5648181 A1G_00420 Rickettsia rickettsii str. 'Sheila Smith' cell cycle protein MesJ YP_001494180.1 60854 D 392021 CDS YP_001494181.1 157827939 5648182 62390..64303 1 NC_009882.1 COG0465 ATP-dependent Zn proteases; cell division protein ftsH 64303 5648182 A1G_00425 Rickettsia rickettsii str. 'Sheila Smith' cell division protein ftsH YP_001494181.1 62390 D 392021 CDS YP_001494182.1 157827940 5648770 64387..64584 1 NC_009882.1 COG0270 Site-specific DNA methylase; site-specific DNA methylase 64584 5648770 A1G_00430 Rickettsia rickettsii str. 'Sheila Smith' site-specific DNA methylase YP_001494182.1 64387 D 392021 CDS YP_001494183.1 157827941 5648771 64572..64709 1 NC_009882.1 COG0270 Site-specific DNA methylase; site-specific DNA methylase 64709 5648771 A1G_00435 Rickettsia rickettsii str. 'Sheila Smith' site-specific DNA methylase YP_001494183.1 64572 D 392021 CDS YP_001494184.1 157827942 5648772 65116..65901 1 NC_009882.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 65901 sdhB 5648772 sdhB Rickettsia rickettsii str. 'Sheila Smith' succinate dehydrogenase iron-sulfur subunit YP_001494184.1 65116 D 392021 CDS YP_001494185.1 157827943 5648773 65976..66188 1 NC_009882.1 hypothetical protein 66188 5648773 A1G_00445 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494185.1 65976 D 392021 CDS YP_001494186.1 157827944 5648774 66185..66337 1 NC_009882.1 hypothetical protein 66337 5648774 A1G_00450 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494186.1 66185 D 392021 CDS YP_001494187.1 157827945 5648775 complement(66462..67682) 1 NC_009882.1 COG1565 Uncharacterized conserved protein; hypothetical protein 67682 5648775 A1G_00455 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494187.1 66462 R 392021 CDS YP_001494188.1 157827946 5648776 complement(67661..68440) 1 NC_009882.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 68440 5648776 A1G_00460 Rickettsia rickettsii str. 'Sheila Smith' prolipoprotein diacylglyceryl transferase YP_001494188.1 67661 R 392021 CDS YP_001494189.1 157827947 5648777 68499..68681 1 NC_009882.1 hypothetical protein 68681 5648777 A1G_00465 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494189.1 68499 D 392021 CDS YP_001494190.1 157827948 5648778 68697..69848 1 NC_009882.1 COG0668 Small-conductance mechanosensitive channel; hypothetical protein 69848 5648778 A1G_00470 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494190.1 68697 D 392021 CDS YP_001494191.1 157827949 5648779 70040..71722 1 NC_009882.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 71722 5648779 A1G_00475 Rickettsia rickettsii str. 'Sheila Smith' putative inner membrane protein translocase component YidC YP_001494191.1 70040 D 392021 CDS YP_001494192.1 157827950 5648120 71726..72271 1 NC_009882.1 COG0558 Phosphatidylglycerophosphate synthase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 72271 5648120 A1G_00480 Rickettsia rickettsii str. 'Sheila Smith' CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001494192.1 71726 D 392021 CDS YP_001494193.1 157827951 5648121 72285..72845 1 NC_009882.1 hypothetical protein 72845 5648121 A1G_00485 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494193.1 72285 D 392021 CDS YP_001494194.1 157827952 5648122 complement(73014..73397) 1 NC_009882.1 hypothetical protein 73397 5648122 A1G_00490 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494194.1 73014 R 392021 CDS YP_001494195.1 157827953 5648123 74764..74871 1 NC_009882.1 hypothetical protein 74871 5648123 A1G_00505 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494195.1 74764 D 392021 CDS YP_001494196.1 157827954 5648124 complement(74938..75612) 1 NC_009882.1 COG0242 N-formylmethionyl-tRNA deformylase; polypeptide deformylase 75612 5648124 A1G_00510 Rickettsia rickettsii str. 'Sheila Smith' polypeptide deformylase YP_001494196.1 74938 R 392021 CDS YP_001494197.1 157827955 5648125 75811..77307 1 NC_009882.1 COG3202 ATP/ADP translocase; ADP,ATP carrier protein 77307 5648125 A1G_00515 Rickettsia rickettsii str. 'Sheila Smith' ADP,ATP carrier protein YP_001494197.1 75811 D 392021 CDS YP_001494198.1 157827956 5648126 77503..78798 1 NC_009882.1 COG2271 Sugar phosphate permease; glycerol-3-phosphate transporter 78798 5648126 A1G_00520 Rickettsia rickettsii str. 'Sheila Smith' glycerol-3-phosphate transporter YP_001494198.1 77503 D 392021 CDS YP_001494199.1 157827957 5648127 78823..79245 1 NC_009882.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 79245 ndk 5648127 ndk Rickettsia rickettsii str. 'Sheila Smith' nucleoside diphosphate kinase YP_001494199.1 78823 D 392021 CDS YP_001494200.1 157827958 5648128 79249..81117 1 NC_009882.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 81117 5648128 A1G_00530 Rickettsia rickettsii str. 'Sheila Smith' tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_001494200.1 79249 D 392021 CDS YP_001494201.1 157827959 5648129 81101..81676 1 NC_009882.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 81676 gidB 5648129 gidB Rickettsia rickettsii str. 'Sheila Smith' 16S rRNA methyltransferase GidB YP_001494201.1 81101 D 392021 CDS YP_001494202.1 157827960 5648400 81673..82440 1 NC_009882.1 COG1192 ATPases involved in chromosome partitioning; soj protein 82440 5648400 A1G_00540 Rickettsia rickettsii str. 'Sheila Smith' soj protein YP_001494202.1 81673 D 392021 CDS YP_001494203.1 157827961 5648401 82427..83287 1 NC_009882.1 COG1475 Predicted transcriptional regulators; stage 0 sporulation protein J 83287 5648401 A1G_00545 Rickettsia rickettsii str. 'Sheila Smith' stage 0 sporulation protein J YP_001494203.1 82427 D 392021 CDS YP_001494204.1 157827962 5648402 83521..85188 1 NC_009882.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 85188 5648402 A1G_00550 Rickettsia rickettsii str. 'Sheila Smith' putative ABC transporter ATP-binding protein YP_001494204.1 83521 D 392021 CDS YP_001494205.1 157827963 5648403 85191..85508 1 NC_009882.1 hypothetical protein 85508 5648403 A1G_00555 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494205.1 85191 D 392021 CDS YP_001494206.1 157827964 5648404 85544..86368 1 NC_009882.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 86368 5648404 A1G_00560 Rickettsia rickettsii str. 'Sheila Smith' 2-dehydro-3-deoxyphosphooctonate aldolase YP_001494206.1 85544 D 392021 CDS YP_001494207.1 157827965 5648405 87176..87400 1 NC_009882.1 hypothetical protein 87400 5648405 A1G_00565 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494207.1 87176 D 392021 CDS YP_001494208.1 157827966 5648406 87774..87914 1 NC_009882.1 hypothetical protein 87914 5648406 A1G_00570 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494208.1 87774 D 392021 CDS YP_001494209.1 157827967 5648407 complement(88012..88344) 1 NC_009882.1 COG0316 Uncharacterized conserved protein; Iron-sulfur cluster assembly accessory protein 88344 5648407 A1G_00575 Rickettsia rickettsii str. 'Sheila Smith' Iron-sulfur cluster assembly accessory protein YP_001494209.1 88012 R 392021 CDS YP_001494210.1 157827968 5648408 88562..89716 1 NC_009882.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 89716 5648408 A1G_00580 Rickettsia rickettsii str. 'Sheila Smith' deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_001494210.1 88562 D 392021 CDS YP_001494211.1 157827969 5648409 89830..91560 1 NC_009882.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 91560 argS 5648409 argS Rickettsia rickettsii str. 'Sheila Smith' arginyl-tRNA synthetase YP_001494211.1 89830 D 392021 CDS YP_001494212.1 157827970 5647843 91733..92407 1 NC_009882.1 hypothetical protein 92407 5647843 A1G_00590 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494212.1 91733 D 392021 CDS YP_001494213.1 157827971 5647844 92575..94791 1 NC_009882.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 94791 5647844 A1G_00595 Rickettsia rickettsii str. 'Sheila Smith' DNA topoisomerase IV subunit A YP_001494213.1 92575 D 392021 CDS YP_001494214.1 157827972 5647845 94971..95084 1 NC_009882.1 hypothetical protein 95084 5647845 A1G_00600 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494214.1 94971 D 392021 CDS YP_001494215.1 157827973 5647846 complement(95487..96803) 1 NC_009882.1 hypothetical protein 96803 5647846 A1G_00605 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494215.1 95487 R 392021 CDS YP_001494216.1 157827974 5647847 97089..97655 1 NC_009882.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 97655 dcd 5647847 dcd Rickettsia rickettsii str. 'Sheila Smith' deoxycytidine triphosphate deaminase YP_001494216.1 97089 D 392021 CDS YP_001494217.1 157827975 5647848 97701..98159 1 NC_009882.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 98159 5647848 A1G_00615 Rickettsia rickettsii str. 'Sheila Smith' preprotein translocase subunit SecB YP_001494217.1 97701 D 392021 CDS YP_001494218.1 157827976 5647849 98381..99094 1 NC_009882.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; transcriptional regulator 99094 5647849 A1G_00620 Rickettsia rickettsii str. 'Sheila Smith' transcriptional regulator YP_001494218.1 98381 D 392021 CDS YP_001494219.1 157827977 5647850 99098..99919 1 NC_009882.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 99919 queF 5647850 queF Rickettsia rickettsii str. 'Sheila Smith' 7-cyano-7-deazaguanine reductase YP_001494219.1 99098 D 392021 CDS YP_001494220.1 157827978 5647851 complement(100236..100796) 1 NC_009882.1 COG3820 Uncharacterized protein conserved in bacteria; hypothetical protein 100796 5647851 A1G_00630 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494220.1 100236 R 392021 CDS YP_001494221.1 157827979 5647852 complement(100851..102248) 1 NC_009882.1 COG1282 NAD/NADP transhydrogenase beta subunit; NAD(p) transhydrogenase subunit beta 102248 5647852 A1G_00635 Rickettsia rickettsii str. 'Sheila Smith' NAD(p) transhydrogenase subunit beta YP_001494221.1 100851 R 392021 CDS YP_001494222.1 157827980 5647462 complement(102387..103121) 1 NC_009882.1 COG3047 Outer membrane protein W; hypothetical protein 103121 5647462 A1G_00640 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494222.1 102387 R 392021 CDS YP_001494223.1 157827981 5647463 103276..104160 1 NC_009882.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 104160 5647463 A1G_00645 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494223.1 103276 D 392021 CDS YP_001494224.1 157827982 5647464 104147..105403 1 NC_009882.1 COG0477 Permeases of the major facilitator superfamily; proline/betaine transporter 105403 5647464 A1G_00650 Rickettsia rickettsii str. 'Sheila Smith' proline/betaine transporter YP_001494224.1 104147 D 392021 CDS YP_001494225.1 157827983 5647465 105400..105576 1 NC_009882.1 hypothetical protein 105576 5647465 A1G_00655 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494225.1 105400 D 392021 CDS YP_001494226.1 157827984 5647466 105684..105884 1 NC_009882.1 hypothetical protein 105884 5647466 A1G_00660 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494226.1 105684 D 392021 CDS YP_001494227.1 157827985 5647468 106238..106540 1 NC_009882.1 preprotein translocase subunit SecG 106540 secG 5647468 secG Rickettsia rickettsii str. 'Sheila Smith' preprotein translocase subunit SecG YP_001494227.1 106238 D 392021 CDS YP_001494228.1 157827986 5647469 complement(107447..112912) 1 NC_009882.1 COG0143 Methionyl-tRNA synthetase; hypothetical protein 112912 5647469 A1G_00670 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494228.1 107447 R 392021 CDS YP_001494229.1 157827987 5647470 113209..114588 1 NC_009882.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 114588 cysS 5647470 cysS Rickettsia rickettsii str. 'Sheila Smith' cysteinyl-tRNA synthetase YP_001494229.1 113209 D 392021 CDS YP_001494230.1 157827988 5648379 114829..115716 1 NC_009882.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 115716 rpsB 5648379 rpsB Rickettsia rickettsii str. 'Sheila Smith' 30S ribosomal protein S2 YP_001494230.1 114829 D 392021 CDS YP_001494231.1 157827989 5648380 115915..116844 1 NC_009882.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 116844 tsf 5648380 tsf Rickettsia rickettsii str. 'Sheila Smith' elongation factor Ts YP_001494231.1 115915 D 392021 CDS YP_001494232.1 157827990 5648381 117318..117707 1 NC_009882.1 hypothetical protein 117707 5648381 A1G_00690 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494232.1 117318 D 392021 CDS YP_001494233.1 157827991 5648382 118077..118205 1 NC_009882.1 hypothetical protein 118205 5648382 A1G_00695 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494233.1 118077 D 392021 CDS YP_001494234.1 157827992 5648383 complement(118354..119748) 1 NC_009882.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 119748 5648383 A1G_00700 Rickettsia rickettsii str. 'Sheila Smith' 3-deoxy-D-manno-octulosonic-acid transferase YP_001494234.1 118354 R 392021 CDS YP_001494235.1 157827993 5648384 complement(119745..120401) 1 NC_009882.1 COG2121 Uncharacterized protein conserved in bacteria; hypothetical protein 120401 5648384 A1G_00705 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494235.1 119745 R 392021 CDS YP_001494236.1 157827994 5648385 complement(120552..121757) 1 NC_009882.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 121757 5648385 A1G_00710 Rickettsia rickettsii str. 'Sheila Smith' aspartate aminotransferase YP_001494236.1 120552 R 392021 CDS YP_001494237.1 157827995 5648386 complement(122108..122272) 1 NC_009882.1 COG2161 Antitoxin of toxin-antitoxin stability system; hypothetical protein 122272 5648386 A1G_00715 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494237.1 122108 R 392021 CDS YP_001494238.1 157827996 5648387 122409..123413 1 NC_009882.1 COG0457 FOG: TPR repeat; hypothetical protein 123413 5648387 A1G_00720 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494238.1 122409 D 392021 CDS YP_001494239.1 157827997 5648388 123418..124173 1 NC_009882.1 COG2853 Surface lipoprotein; vacJ lipoprotein 124173 5648388 A1G_00725 Rickettsia rickettsii str. 'Sheila Smith' vacJ lipoprotein YP_001494239.1 123418 D 392021 CDS YP_001494240.1 157827998 5647913 124193..124792 1 NC_009882.1 COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component; hypothetical protein 124792 5647913 A1G_00730 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494240.1 124193 D 392021 CDS YP_001494241.1 157827999 5647914 125279..125629 1 NC_009882.1 COG0462 Phosphoribosylpyrophosphate synthetase; ribose-phosphate pyrophosphokinase 125629 5647914 A1G_00735 Rickettsia rickettsii str. 'Sheila Smith' ribose-phosphate pyrophosphokinase YP_001494241.1 125279 D 392021 CDS YP_001494242.1 157828000 5647915 125610..125777 1 NC_009882.1 COG0462 Phosphoribosylpyrophosphate synthetase; ribose-phosphate pyrophosphokinase 125777 5647915 A1G_00740 Rickettsia rickettsii str. 'Sheila Smith' ribose-phosphate pyrophosphokinase YP_001494242.1 125610 D 392021 CDS YP_001494243.1 157828001 5647916 125749..125973 1 NC_009882.1 hypothetical protein 125973 5647916 A1G_00745 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494243.1 125749 D 392021 CDS YP_001494244.1 157828002 5647917 126039..127106 1 NC_009882.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 127106 alr 5647917 alr Rickettsia rickettsii str. 'Sheila Smith' alanine racemase YP_001494244.1 126039 D 392021 CDS YP_001494245.1 157828003 5647918 127263..128042 1 NC_009882.1 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component; ABC transporter permease 128042 5647918 A1G_00755 Rickettsia rickettsii str. 'Sheila Smith' ABC transporter permease YP_001494245.1 127263 D 392021 CDS YP_001494246.1 157828004 5647919 128194..128949 1 NC_009882.1 COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component; ribonucleotide ABC transporter ATP-binding protein 128949 5647919 A1G_00760 Rickettsia rickettsii str. 'Sheila Smith' ribonucleotide ABC transporter ATP-binding protein YP_001494246.1 128194 D 392021 CDS YP_001494247.1 157828005 5647920 128951..129199 1 NC_009882.1 hypothetical protein 129199 5647920 A1G_00765 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494247.1 128951 D 392021 CDS YP_001494248.1 157828006 5647921 complement(129755..130165) 1 NC_009882.1 hypothetical protein 130165 5647921 A1G_00770 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494248.1 129755 R 392021 CDS YP_001494249.1 157828007 5647922 complement(130606..130836) 1 NC_009882.1 hypothetical protein 130836 5647922 A1G_00775 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494249.1 130606 R 392021 CDS YP_001494250.1 157828008 5647923 complement(130863..131009) 1 NC_009882.1 COG0457 FOG: TPR repeat; hypothetical protein 131009 5647923 A1G_00780 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494250.1 130863 R 392021 CDS YP_001494251.1 157828009 5647433 complement(131006..131143) 1 NC_009882.1 50S ribosomal protein L28 131143 rpmB 5647433 rpmB Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L28 YP_001494251.1 131006 R 392021 CDS YP_001494252.1 157828010 5647434 131618..131911 1 NC_009882.1 required for 70S ribosome assembly; 50S ribosomal protein L28 131911 rpmB 5647434 rpmB Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L28 YP_001494252.1 131618 D 392021 CDS YP_001494253.1 157828011 5647435 131908..132144 1 NC_009882.1 RpmE; RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 132144 5647435 A1G_00795 Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L31 YP_001494253.1 131908 D 392021 CDS YP_001494254.1 157828012 5647437 132498..133136 1 NC_009882.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 133136 engB 5647437 engB Rickettsia rickettsii str. 'Sheila Smith' ribosome biogenesis GTP-binding protein YsxC YP_001494254.1 132498 D 392021 CDS YP_001494255.1 157828013 5647438 133207..134007 1 NC_009882.1 COG0548 Acetylglutamate kinase; acetylglutamate kinase 134007 5647438 A1G_00805 Rickettsia rickettsii str. 'Sheila Smith' acetylglutamate kinase YP_001494255.1 133207 D 392021 CDS YP_001494256.1 157828014 5647439 134020..134307 1 NC_009882.1 COG3702 Type IV secretory pathway, VirB3 components; type IV secretion system protein VirB3 134307 5647439 A1G_00810 Rickettsia rickettsii str. 'Sheila Smith' type IV secretion system protein VirB3 YP_001494256.1 134020 D 392021 CDS YP_001494257.1 157828015 5647440 134523..136940 1 NC_009882.1 COG3451 Type IV secretory pathway, VirB4 components; type IV secretion system ATPase VirB4 136940 5647440 A1G_00815 Rickettsia rickettsii str. 'Sheila Smith' type IV secretion system ATPase VirB4 YP_001494257.1 134523 D 392021 CDS YP_001494258.1 157828016 5647441 137058..140018 1 NC_009882.1 COG3704 Type IV secretory pathway, VirB6 components; hypothetical protein 140018 5647441 A1G_00820 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494258.1 137058 D 392021 CDS YP_001494259.1 157828017 5648059 140005..141990 1 NC_009882.1 COG3704 Type IV secretory pathway, VirB6 components; hypothetical protein 141990 5648059 A1G_00825 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494259.1 140005 D 392021 CDS YP_001494260.1 157828018 5648060 141997..144897 1 NC_009882.1 COG3704 Type IV secretory pathway, VirB6 components; hypothetical protein 144897 5648060 A1G_00830 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494260.1 141997 D 392021 CDS YP_001494261.1 157828019 5648061 145100..147736 1 NC_009882.1 COG3704 Type IV secretory pathway, VirB6 components; hypothetical protein 147736 5648061 A1G_00835 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494261.1 145100 D 392021 CDS YP_001494262.1 157828020 5648062 147889..151350 1 NC_009882.1 COG3704 Type IV secretory pathway, VirB6 components; hypothetical protein 151350 5648062 A1G_00840 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494262.1 147889 D 392021 CDS YP_001494263.1 157828021 5648063 154188..154316 1 NC_009882.1 tRNA (guanine-N(1)-)-methyltransferase 154316 trmD 5648063 trmD Rickettsia rickettsii str. 'Sheila Smith' tRNA (guanine-N(1)-)-methyltransferase YP_001494263.1 154188 D 392021 CDS YP_001494264.1 157828022 5648064 154316..154411 1 NC_009882.1 hypothetical protein 154411 5648064 A1G_00870 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494264.1 154316 D 392021 CDS YP_001494265.1 157828023 5648065 154664..155368 1 NC_009882.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 155368 trmD 5648065 trmD Rickettsia rickettsii str. 'Sheila Smith' tRNA (guanine-N(1)-)-methyltransferase YP_001494265.1 154664 D 392021 CDS YP_001494266.1 157828024 5648066 155386..155802 1 NC_009882.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 155802 rplS 5648066 rplS Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L19 YP_001494266.1 155386 D 392021 CDS YP_001494267.1 157828025 5648067 complement(155972..156208) 1 NC_009882.1 COG3750 Uncharacterized protein conserved in bacteria; hypothetical protein 156208 5648067 A1G_00885 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494267.1 155972 R 392021 CDS YP_001494268.1 157828026 5648068 156281..157207 1 NC_009882.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 157207 secF 5648068 secF Rickettsia rickettsii str. 'Sheila Smith' preprotein translocase subunit SecF YP_001494268.1 156281 D 392021 CDS YP_001494269.1 157828027 5648069 157372..158637 1 NC_009882.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 158637 5648069 A1G_00895 Rickettsia rickettsii str. 'Sheila Smith' NADH dehydrogenase I subunit F YP_001494269.1 157372 D 392021 CDS YP_001494270.1 157828028 5648029 158821..159621 1 NC_009882.1 COG0681 Signal peptidase I; signal peptidase I 159621 5648029 A1G_00900 Rickettsia rickettsii str. 'Sheila Smith' signal peptidase I YP_001494270.1 158821 D 392021 CDS YP_001494271.1 157828029 5648030 159621..160304 1 NC_009882.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 160304 rnc 5648030 rnc Rickettsia rickettsii str. 'Sheila Smith' ribonuclease III YP_001494271.1 159621 D 392021 CDS YP_001494272.1 157828030 5648031 160297..161316 1 NC_009882.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 161316 era 5648031 era Rickettsia rickettsii str. 'Sheila Smith' GTP-binding protein Era YP_001494272.1 160297 D 392021 CDS YP_001494273.1 157828031 5648032 161434..161907 1 NC_009882.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 161907 ruvC 5648032 ruvC Rickettsia rickettsii str. 'Sheila Smith' Holliday junction resolvase YP_001494273.1 161434 D 392021 CDS YP_001494274.1 157828032 5648033 161909..162601 1 NC_009882.1 COG0565 rRNA methylase; tRNA/rRNA methyltransferase 162601 5648033 A1G_00920 Rickettsia rickettsii str. 'Sheila Smith' tRNA/rRNA methyltransferase YP_001494274.1 161909 D 392021 CDS YP_001494275.1 157828033 5648034 complement(162582..162767) 1 NC_009882.1 hypothetical protein 162767 5648034 A1G_00925 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494275.1 162582 R 392021 CDS YP_001494276.1 157828034 5648035 complement(162868..163104) 1 NC_009882.1 hypothetical protein 163104 5648035 A1G_00930 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494276.1 162868 R 392021 CDS YP_001494277.1 157828035 5648036 complement(163213..164259) 1 NC_009882.1 COG3660 Predicted nucleoside-diphosphate-sugar epimerase; hypothetical protein 164259 5648036 A1G_00935 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494277.1 163213 R 392021 CDS YP_001494278.1 157828036 5648037 complement(164256..165215) 1 NC_009882.1 COG0489 ATPases involved in chromosome partitioning; Mrp protein 165215 5648037 A1G_00940 Rickettsia rickettsii str. 'Sheila Smith' Mrp protein YP_001494278.1 164256 R 392021 CDS YP_001494279.1 157828037 5648038 165322..166362 1 NC_009882.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs; protease activity modulator HflK 166362 5648038 A1G_00945 Rickettsia rickettsii str. 'Sheila Smith' protease activity modulator HflK YP_001494279.1 165322 D 392021 CDS YP_001494280.1 157828038 5647471 166455..167315 1 NC_009882.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs; membrane protease subunit stomatin/prohibitin-like protein 167315 5647471 A1G_00950 Rickettsia rickettsii str. 'Sheila Smith' membrane protease subunit stomatin/prohibitin-like protein YP_001494280.1 166455 D 392021 CDS YP_001494281.1 157828039 5647472 167350..168876 1 NC_009882.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; serine protease 168876 5647472 A1G_00955 Rickettsia rickettsii str. 'Sheila Smith' serine protease YP_001494281.1 167350 D 392021 CDS YP_001494282.1 157828040 5647473 169030..169773 1 NC_009882.1 COG1054 Predicted sulfurtransferase; hypothetical protein 169773 5647473 A1G_00960 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494282.1 169030 D 392021 CDS YP_001494283.1 157828041 5647474 169940..170314 1 NC_009882.1 COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit; succinate dehydrogenase cytochrome b-556 subunit 170314 5647474 A1G_00965 Rickettsia rickettsii str. 'Sheila Smith' succinate dehydrogenase cytochrome b-556 subunit YP_001494283.1 169940 D 392021 CDS YP_001494284.1 157828042 5647475 170380..170469 1 NC_009882.1 hypothetical protein 170469 5647475 A1G_00970 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494284.1 170380 D 392021 CDS YP_001494285.1 157828043 5647476 170459..170836 1 NC_009882.1 COG2142 Succinate dehydrogenase, hydrophobic anchor subunit; succinate dehydrogenase hydrophobic membrane anchor protein 170836 5647476 A1G_00975 Rickettsia rickettsii str. 'Sheila Smith' succinate dehydrogenase hydrophobic membrane anchor protein YP_001494285.1 170459 D 392021 CDS YP_001494286.1 157828044 5647477 170970..172760 1 NC_009882.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 172760 sdhA 5647477 sdhA Rickettsia rickettsii str. 'Sheila Smith' succinate dehydrogenase flavoprotein subunit YP_001494286.1 170970 D 392021 CDS YP_001494287.1 157828045 5647478 172907..173563 1 NC_009882.1 COG0765 ABC-type amino acid transport system, permease component; amino acid ABC transporter permease 173563 5647478 A1G_00985 Rickettsia rickettsii str. 'Sheila Smith' amino acid ABC transporter permease YP_001494287.1 172907 D 392021 CDS YP_001494288.1 157828046 5647479 173722..174111 1 NC_009882.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 174111 rpsL 5647479 rpsL Rickettsia rickettsii str. 'Sheila Smith' 30S ribosomal protein S12 YP_001494288.1 173722 D 392021 CDS YP_001494289.1 157828047 5647480 174138..174620 1 NC_009882.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 174620 5647480 A1G_00995 Rickettsia rickettsii str. 'Sheila Smith' 30S ribosomal protein S7 YP_001494289.1 174138 D 392021 CDS YP_001494290.1 157828048 5647893 174633..176732 1 NC_009882.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 176732 5647893 A1G_01000 Rickettsia rickettsii str. 'Sheila Smith' elongation factor G YP_001494290.1 174633 D 392021 CDS YP_001494291.1 157828049 5647895 177150..177350 1 NC_009882.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 177350 secE 5647895 secE Rickettsia rickettsii str. 'Sheila Smith' preprotein translocase subunit SecE YP_001494291.1 177150 D 392021 CDS YP_001494292.1 157828050 5647896 177366..177944 1 NC_009882.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 177944 nusG 5647896 nusG Rickettsia rickettsii str. 'Sheila Smith' transcription antitermination protein NusG YP_001494292.1 177366 D 392021 CDS YP_001494293.1 157828051 5647897 178214..178651 1 NC_009882.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 178651 rplK 5647897 rplK Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L11 YP_001494293.1 178214 D 392021 CDS YP_001494294.1 157828052 5647898 178657..179376 1 NC_009882.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 179376 rplA 5647898 rplA Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L1 YP_001494294.1 178657 D 392021 CDS YP_001494295.1 157828053 5647899 179487..179996 1 NC_009882.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 179996 rplJ 5647899 rplJ Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L10 YP_001494295.1 179487 D 392021 CDS YP_001494296.1 157828054 5647900 180140..180571 1 NC_009882.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 180571 rplL 5647900 rplL Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L7/L12 YP_001494296.1 180140 D 392021 CDS YP_001494297.1 157828055 5647901 181518..185639 1 NC_009882.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 185639 rpoB 5647901 rpoB Rickettsia rickettsii str. 'Sheila Smith' DNA-directed RNA polymerase subunit beta YP_001494297.1 181518 D 392021 CDS YP_001494298.1 157828056 5647545 185897..190015 1 NC_009882.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 190015 5647545 A1G_01040 Rickettsia rickettsii str. 'Sheila Smith' DNA-directed RNA polymerase subunit beta' YP_001494298.1 185897 D 392021 CDS YP_001494299.1 157828057 5647546 complement(190416..191555) 1 NC_009882.1 hypothetical protein 191555 5647546 A1G_01045 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494299.1 190416 R 392021 CDS YP_001494300.1 157828058 5647547 191767..193269 1 NC_009882.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 193269 5647547 A1G_01050 Rickettsia rickettsii str. 'Sheila Smith' leucyl aminopeptidase YP_001494300.1 191767 D 392021 CDS YP_001494301.1 157828059 5647548 193488..194288 1 NC_009882.1 COG1192 ATPases involved in chromosome partitioning; hypothetical protein 194288 5647548 A1G_01055 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494301.1 193488 D 392021 CDS YP_001494302.1 157828060 5647549 194371..194805 1 NC_009882.1 hypothetical protein 194805 5647549 A1G_01060 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494302.1 194371 D 392021 CDS YP_001494303.1 157828061 5647550 194866..196704 1 NC_009882.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 196704 aspS 5647550 aspS Rickettsia rickettsii str. 'Sheila Smith' aspartyl-tRNA synthetase YP_001494303.1 194866 D 392021 CDS YP_001494304.1 157828062 5647551 complement(196984..199098) 1 NC_009882.1 hypothetical protein 199098 5647551 A1G_01070 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494304.1 196984 R 392021 CDS YP_001494305.1 157828063 5647552 complement(199481..200191) 1 NC_009882.1 COG0670 Integral membrane protein, interacts with FtsH; hypothetical protein 200191 5647552 A1G_01075 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494305.1 199481 R 392021 CDS YP_001494306.1 157828064 5647553 complement(200265..200984) 1 NC_009882.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 200984 5647553 A1G_01080 Rickettsia rickettsii str. 'Sheila Smith' dihydrodipicolinate reductase YP_001494306.1 200265 R 392021 CDS YP_001494307.1 157828065 5647554 complement(201262..201741) 1 NC_009882.1 COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family; hypothetical protein 201741 5647554 A1G_01085 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494307.1 201262 R 392021 CDS YP_001494308.1 157828066 5647555 complement(201726..202451) 1 NC_009882.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter substrate binding protein 202451 5647555 A1G_01090 Rickettsia rickettsii str. 'Sheila Smith' amino acid ABC transporter substrate binding protein YP_001494308.1 201726 R 392021 CDS YP_001494309.1 157828067 5648049 complement(202709..204160) 1 NC_009882.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 204160 gatB 5648049 gatB Rickettsia rickettsii str. 'Sheila Smith' aspartyl/glutamyl-tRNA amidotransferase subunit B YP_001494309.1 202709 R 392021 CDS YP_001494310.1 157828068 5648050 complement(204163..205644) 1 NC_009882.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 205644 gatA 5648050 gatA Rickettsia rickettsii str. 'Sheila Smith' aspartyl/glutamyl-tRNA amidotransferase subunit A YP_001494310.1 204163 R 392021 CDS YP_001494311.1 157828069 5648051 complement(205647..205949) 1 NC_009882.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 205949 gatC 5648051 gatC Rickettsia rickettsii str. 'Sheila Smith' aspartyl/glutamyl-tRNA amidotransferase subunit C YP_001494311.1 205647 R 392021 CDS YP_001494312.1 157828070 5648052 complement(206253..206426) 1 NC_009882.1 hypothetical protein 206426 5648052 A1G_01110 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494312.1 206253 R 392021 CDS YP_001494313.1 157828071 5648053 complement(206744..207304) 1 NC_009882.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 207304 frr 5648053 frr Rickettsia rickettsii str. 'Sheila Smith' ribosome recycling factor YP_001494313.1 206744 R 392021 CDS YP_001494314.1 157828072 5648054 complement(207590..208333) 1 NC_009882.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 208333 pyrH 5648054 pyrH Rickettsia rickettsii str. 'Sheila Smith' uridylate kinase YP_001494314.1 207590 R 392021 CDS YP_001494315.1 157828073 5648055 complement(208342..208665) 1 NC_009882.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit E 208665 5648055 A1G_01125 Rickettsia rickettsii str. 'Sheila Smith' putative monovalent cation/H+ antiporter subunit E YP_001494315.1 208342 R 392021 CDS YP_001494316.1 157828074 5648056 complement(208649..210208) 1 NC_009882.1 COG0477 Permeases of the major facilitator superfamily; multidrug resistance protein B 210208 5648056 A1G_01130 Rickettsia rickettsii str. 'Sheila Smith' multidrug resistance protein B YP_001494316.1 208649 R 392021 CDS YP_001494317.1 157828075 5648057 210439..210642 1 NC_009882.1 COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; hypothetical protein 210642 5648057 A1G_01135 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494317.1 210439 D 392021 CDS YP_001494318.1 157828076 5648058 complement(211017..211202) 1 NC_009882.1 hypothetical protein 211202 5648058 A1G_01140 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494318.1 211017 R 392021 CDS YP_001494319.1 157828077 5648245 complement(211259..211849) 1 NC_009882.1 hypothetical protein 211849 5648245 A1G_01145 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494319.1 211259 R 392021 CDS YP_001494320.1 157828078 5648247 complement(212547..214853) 1 NC_009882.1 COG4775 Outer membrane protein/protective antigen OMA87; outer membrane protein omp1 214853 5648247 A1G_01150 Rickettsia rickettsii str. 'Sheila Smith' outer membrane protein omp1 YP_001494320.1 212547 R 392021 CDS YP_001494321.1 157828079 5648248 complement(215093..216166) 1 NC_009882.1 COG0750 Predicted membrane-associated Zn-dependent proteases 1; hypothetical protein 216166 5648248 A1G_01155 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494321.1 215093 R 392021 CDS YP_001494322.1 157828080 5648249 216447..216917 1 NC_009882.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 216917 nusB 5648249 nusB Rickettsia rickettsii str. 'Sheila Smith' transcription antitermination protein NusB YP_001494322.1 216447 D 392021 CDS YP_001494323.1 157828081 5648250 217051..217734 1 NC_009882.1 COG0293 23S rRNA methylase; cell division protein ftsJ 217734 5648250 A1G_01165 Rickettsia rickettsii str. 'Sheila Smith' cell division protein ftsJ YP_001494323.1 217051 D 392021 CDS YP_001494324.1 157828082 5648251 complement(217785..218846) 1 NC_009882.1 hypothetical protein 218846 5648251 A1G_01170 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494324.1 217785 R 392021 CDS YP_001494325.1 157828083 5648252 219011..219955 1 NC_009882.1 hypothetical protein 219955 5648252 A1G_01175 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494325.1 219011 D 392021 CDS YP_001494326.1 157828084 5648253 complement(220015..220455) 1 NC_009882.1 COG2867 Oligoketide cyclase/lipid transport protein; hypothetical protein 220455 5648253 A1G_01180 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494326.1 220015 R 392021 CDS YP_001494327.1 157828085 5648577 complement(220455..220739) 1 NC_009882.1 COG5508 Uncharacterized conserved small protein; hypothetical protein 220739 5648577 A1G_01185 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494327.1 220455 R 392021 CDS YP_001494328.1 157828086 5648578 220752..221486 1 NC_009882.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 221486 5648578 A1G_01190 Rickettsia rickettsii str. 'Sheila Smith' 16S ribosomal RNA methyltransferase RsmE YP_001494328.1 220752 D 392021 CDS YP_001494329.1 157828087 5648579 complement(221575..221811) 1 NC_009882.1 COG2155 Uncharacterized conserved protein; hypothetical protein 221811 5648579 A1G_01195 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494329.1 221575 R 392021 CDS YP_001494330.1 157828088 5648580 complement(222066..225092) 1 NC_009882.1 COG0841 Cation/multidrug efflux pump; acriflavin resistance protein D 225092 5648580 A1G_01200 Rickettsia rickettsii str. 'Sheila Smith' acriflavin resistance protein D YP_001494330.1 222066 R 392021 CDS YP_001494331.1 157828089 5648581 225568..225900 1 NC_009882.1 COG0776 Bacterial nucleoid DNA-binding protein; DNA-binding protein HU 225900 5648581 A1G_01205 Rickettsia rickettsii str. 'Sheila Smith' DNA-binding protein HU YP_001494331.1 225568 D 392021 CDS YP_001494332.1 157828090 5648582 226040..226849 1 NC_009882.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 226849 5648582 A1G_01210 Rickettsia rickettsii str. 'Sheila Smith' DNA polymerase III subunit delta' YP_001494332.1 226040 D 392021 CDS YP_001494333.1 157828091 5648583 227060..228409 1 NC_009882.1 COG0541 Signal recognition particle GTPase; signal recognition particle protein 228409 5648583 A1G_01215 Rickettsia rickettsii str. 'Sheila Smith' signal recognition particle protein YP_001494333.1 227060 D 392021 CDS YP_001494334.1 157828092 5648584 complement(229109..229405) 1 NC_009882.1 COG1505 Serine proteases of the peptidase family S9A; peptidase Y4NA (ppcE) 229405 5648584 A1G_01220 Rickettsia rickettsii str. 'Sheila Smith' peptidase Y4NA (ppcE) YP_001494334.1 229109 R 392021 CDS YP_001494335.1 157828093 5648585 complement(229429..229695) 1 NC_009882.1 COG1505 Serine proteases of the peptidase family S9A; hypothetical protein 229695 5648585 A1G_01225 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494335.1 229429 R 392021 CDS YP_001494336.1 157828094 5648586 complement(230121..230282) 1 NC_009882.1 COG1505 Serine proteases of the peptidase family S9A; hypothetical protein 230282 5648586 A1G_01230 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494336.1 230121 R 392021 CDS YP_001494337.1 157828095 5648203 231143..232345 1 NC_009882.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 232345 5648203 A1G_01245 Rickettsia rickettsii str. 'Sheila Smith' coproporphyrinogen III oxidase YP_001494337.1 231143 D 392021 CDS YP_001494338.1 157828096 5648204 232400..232537 1 NC_009882.1 hypothetical protein 232537 5648204 A1G_01250 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494338.1 232400 D 392021 CDS YP_001494339.1 157828097 5648205 232567..232908 1 NC_009882.1 COG0666 FOG: Ankyrin repeat; ankyrin repeat-containing protein 232908 5648205 A1G_01255 Rickettsia rickettsii str. 'Sheila Smith' ankyrin repeat-containing protein YP_001494339.1 232567 D 392021 CDS YP_001494340.1 157828098 5648206 232970..233101 1 NC_009882.1 ankyrin repeat-containing protein 233101 5648206 A1G_01260 Rickettsia rickettsii str. 'Sheila Smith' ankyrin repeat-containing protein YP_001494340.1 232970 D 392021 CDS YP_001494341.1 157828099 5648207 complement(233516..233698) 1 NC_009882.1 hypothetical protein 233698 5648207 A1G_01265 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494341.1 233516 R 392021 CDS YP_001494342.1 157828100 5648208 complement(234023..234208) 1 NC_009882.1 hypothetical protein 234208 5648208 A1G_01270 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494342.1 234023 R 392021 CDS YP_001494343.1 157828101 5648209 complement(234262..235461) 1 NC_009882.1 COG1301 Na+/H+-dicarboxylate symporters; proton/sodium-glutamate symport protein 235461 5648209 A1G_01275 Rickettsia rickettsii str. 'Sheila Smith' proton/sodium-glutamate symport protein YP_001494343.1 234262 R 392021 CDS YP_001494344.1 157828102 5648210 complement(235500..235814) 1 NC_009882.1 COG1324 Uncharacterized protein involved in tolerance to divalent cations; divalent cation tolerance protein 235814 5648210 A1G_01280 Rickettsia rickettsii str. 'Sheila Smith' divalent cation tolerance protein YP_001494344.1 235500 R 392021 CDS YP_001494345.1 157828103 5648211 complement(235817..236233) 1 NC_009882.1 COG0720 6-pyruvoyl-tetrahydropterin synthase; hypothetical protein 236233 5648211 A1G_01285 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494345.1 235817 R 392021 CDS YP_001494346.1 157828104 5648212 complement(236404..237591) 1 NC_009882.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 237591 5648212 A1G_01290 Rickettsia rickettsii str. 'Sheila Smith' dihydrolipoamide succinyltransferase YP_001494346.1 236404 R 392021 CDS YP_001494347.1 157828105 5647822 complement(237606..237758) 1 NC_009882.1 alpha-ketoglutarate decarboxylase 237758 kgd 5647822 kgd Rickettsia rickettsii str. 'Sheila Smith' alpha-ketoglutarate decarboxylase YP_001494347.1 237606 R 392021 CDS YP_001494348.1 157828106 5647823 complement(237755..240541) 1 NC_009882.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 240541 sucA 5647823 sucA Rickettsia rickettsii str. 'Sheila Smith' 2-oxoglutarate dehydrogenase E1 component YP_001494348.1 237755 R 392021 CDS YP_001494349.1 157828107 5647824 complement(240677..242167) 1 NC_009882.1 COG2317 Zn-dependent carboxypeptidase; thermostable carboxypeptidase 242167 5647824 A1G_01305 Rickettsia rickettsii str. 'Sheila Smith' thermostable carboxypeptidase YP_001494349.1 240677 R 392021 CDS YP_001494350.1 157828108 5647825 complement(242233..243870) 1 NC_009882.1 COG0497 ATPase involved in DNA repair; DNA repair protein RecN 243870 5647825 A1G_01310 Rickettsia rickettsii str. 'Sheila Smith' DNA repair protein RecN YP_001494350.1 242233 R 392021 CDS YP_001494351.1 157828109 5647826 complement(243878..244633) 1 NC_009882.1 COG4105 DNA uptake lipoprotein; hypothetical protein 244633 5647826 A1G_01315 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494351.1 243878 R 392021 CDS YP_001494352.1 157828110 5647827 complement(244912..245004) 1 NC_009882.1 hypothetical protein 245004 5647827 A1G_01320 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494352.1 244912 R 392021 CDS YP_001494353.1 157828111 5647828 complement(244994..245095) 1 NC_009882.1 COG4572 Putative cation transport regulator; hypothetical protein 245095 5647828 A1G_01325 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494353.1 244994 R 392021 CDS YP_001494354.1 157828112 5647829 complement(245174..246295) 1 NC_009882.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 246295 5647829 A1G_01330 Rickettsia rickettsii str. 'Sheila Smith' chaperone protein DnaJ YP_001494354.1 245174 R 392021 CDS YP_001494355.1 157828113 5647830 complement(246424..248307) 1 NC_009882.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 248307 dnaK 5647830 dnaK Rickettsia rickettsii str. 'Sheila Smith' molecular chaperone DnaK YP_001494355.1 246424 R 392021 CDS YP_001494356.1 157828114 5647831 248369..249862 1 NC_009882.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; heat shock protease 249862 5647831 A1G_01340 Rickettsia rickettsii str. 'Sheila Smith' heat shock protease YP_001494356.1 248369 D 392021 CDS YP_001494357.1 157828115 5648183 250612..250890 1 NC_009882.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component; hypothetical protein 250890 5648183 A1G_01345 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494357.1 250612 D 392021 CDS YP_001494358.1 157828116 5648184 complement(251031..251372) 1 NC_009882.1 hypothetical protein 251372 5648184 A1G_01350 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494358.1 251031 R 392021 CDS YP_001494359.1 157828117 5648185 251540..252013 1 NC_009882.1 hypothetical protein 252013 5648185 A1G_01355 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494359.1 251540 D 392021 CDS YP_001494360.1 157828118 5648186 252021..252995 1 NC_009882.1 required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 252995 holA 5648186 holA Rickettsia rickettsii str. 'Sheila Smith' DNA polymerase III subunit delta YP_001494360.1 252021 D 392021 CDS YP_001494361.1 157828119 5648187 253131..253670 1 NC_009882.1 COG2941 Ubiquinone biosynthesis protein COQ7; ubiquinone biosynthesis protein Coq7 253670 5648187 A1G_01365 Rickettsia rickettsii str. 'Sheila Smith' ubiquinone biosynthesis protein Coq7 YP_001494361.1 253131 D 392021 CDS YP_001494362.1 157828120 5648188 complement(254225..254356) 1 NC_009882.1 hypothetical protein 254356 5648188 A1G_01370 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494362.1 254225 R 392021 CDS YP_001494363.1 157828121 5648189 254355..255071 1 NC_009882.1 COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3; cytochrome c oxidase subunit III 255071 5648189 A1G_01375 Rickettsia rickettsii str. 'Sheila Smith' cytochrome c oxidase subunit III YP_001494363.1 254355 D 392021 CDS YP_001494364.1 157828122 5648190 255227..255586 1 NC_009882.1 hypothetical protein 255586 5648190 A1G_01380 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494364.1 255227 D 392021 CDS YP_001494365.1 157828123 5648191 complement(255930..256562) 1 NC_009882.1 hypothetical protein 256562 5648191 A1G_01385 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494365.1 255930 R 392021 CDS YP_001494366.1 157828124 5648192 256639..257463 1 NC_009882.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 257463 dapD 5648192 dapD Rickettsia rickettsii str. 'Sheila Smith' 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_001494366.1 256639 D 392021 CDS YP_001494367.1 157828125 5648781 complement(257674..257922) 1 NC_009882.1 hypothetical protein 257922 5648781 A1G_01395 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494367.1 257674 R 392021 CDS YP_001494368.1 157828126 5648782 complement(257903..258142) 1 NC_009882.1 hypothetical protein 258142 5648782 A1G_01400 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494368.1 257903 R 392021 CDS YP_001494369.1 157828127 5648783 complement(258567..258764) 1 NC_009882.1 hypothetical protein 258764 5648783 A1G_01405 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494369.1 258567 R 392021 CDS YP_001494370.1 157828128 5648784 complement(258893..259162) 1 NC_009882.1 hypothetical protein 259162 5648784 A1G_01410 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494370.1 258893 R 392021 CDS YP_001494371.1 157828129 5648785 complement(259150..259308) 1 NC_009882.1 hypothetical protein 259308 5648785 A1G_01415 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494371.1 259150 R 392021 CDS YP_001494372.1 157828130 5648786 complement(259379..259531) 1 NC_009882.1 hypothetical protein 259531 5648786 A1G_01420 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494372.1 259379 R 392021 CDS YP_001494373.1 157828131 5648787 262509..262940 1 NC_009882.1 cell surface antigen-like protein Sca8 262940 5648787 A1G_01440 Rickettsia rickettsii str. 'Sheila Smith' cell surface antigen-like protein Sca8 YP_001494373.1 262509 D 392021 CDS YP_001494374.1 157828132 5648788 263261..263530 1 NC_009882.1 cell surface antigen-like protein Sca8 263530 5648788 A1G_01445 Rickettsia rickettsii str. 'Sheila Smith' cell surface antigen-like protein Sca8 YP_001494374.1 263261 D 392021 CDS YP_001494375.1 157828133 5648789 263542..263811 1 NC_009882.1 hypothetical protein 263811 5648789 A1G_01450 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494375.1 263542 D 392021 CDS YP_001494376.1 157828134 5648790 complement(264525..264827) 1 NC_009882.1 hypothetical protein 264827 5648790 A1G_01455 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494376.1 264525 R 392021 CDS YP_001494377.1 157828135 5648070 266435..266578 1 NC_009882.1 COG0451 Nucleoside-diphosphate-sugar epimerases; cell surface antigen-like protein Sca8 266578 5648070 A1G_01475 Rickettsia rickettsii str. 'Sheila Smith' cell surface antigen-like protein Sca8 YP_001494377.1 266435 D 392021 CDS YP_001494378.1 157828136 5648071 complement(267069..267515) 1 NC_009882.1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins; hypothetical protein 267515 5648071 A1G_01480 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494378.1 267069 R 392021 CDS YP_001494379.1 157828137 5648072 complement(267525..268466) 1 NC_009882.1 COG2358 TRAP-type uncharacterized transport system, periplasmic component; hypothetical protein 268466 5648072 A1G_01485 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494379.1 267525 R 392021 CDS YP_001494380.1 157828138 5648073 complement(268471..269541) 1 NC_009882.1 hypothetical protein 269541 5648073 A1G_01490 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494380.1 268471 R 392021 CDS YP_001494381.1 157828139 5648074 complement(269554..269892) 1 NC_009882.1 COG0633 Ferredoxin; ferredoxin 269892 5648074 A1G_01495 Rickettsia rickettsii str. 'Sheila Smith' ferredoxin YP_001494381.1 269554 R 392021 CDS YP_001494382.1 157828140 5648075 complement(269956..271743) 1 NC_009882.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 271743 hscA 5648075 hscA Rickettsia rickettsii str. 'Sheila Smith' chaperone protein HscA YP_001494382.1 269956 R 392021 CDS YP_001494383.1 157828141 5648076 complement(271734..272234) 1 NC_009882.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 272234 hscB 5648076 hscB Rickettsia rickettsii str. 'Sheila Smith' co-chaperone HscB YP_001494383.1 271734 R 392021 CDS YP_001494384.1 157828142 5648077 272296..272877 1 NC_009882.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 272877 rnhB 5648077 rnhB Rickettsia rickettsii str. 'Sheila Smith' ribonuclease HII YP_001494384.1 272296 D 392021 CDS YP_001494385.1 157828143 5648078 complement(272842..273021) 1 NC_009882.1 hypothetical protein 273021 5648078 A1G_01515 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494385.1 272842 R 392021 CDS YP_001494386.1 157828144 5648079 complement(273031..275016) 1 NC_009882.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 275016 5648079 A1G_01520 Rickettsia rickettsii str. 'Sheila Smith' excinuclease ABC subunit B YP_001494386.1 273031 R 392021 CDS YP_001494387.1 157828145 5648493 275087..275395 1 NC_009882.1 COG0695 Glutaredoxin and related proteins; glutaredoxin 3 275395 5648493 A1G_01525 Rickettsia rickettsii str. 'Sheila Smith' glutaredoxin 3 YP_001494387.1 275087 D 392021 CDS YP_001494388.1 157828146 5648494 276367..276924 1 NC_009882.1 COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components; hypothetical protein 276924 5648494 A1G_01540 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494388.1 276367 D 392021 CDS YP_001494389.1 157828147 5648495 complement(277213..277476) 1 NC_009882.1 DNA gyrase subunit A 277476 5648495 A1G_01545 Rickettsia rickettsii str. 'Sheila Smith' DNA gyrase subunit A YP_001494389.1 277213 R 392021 CDS YP_001494390.1 157828148 5648496 277846..277953 1 NC_009882.1 hypothetical protein 277953 5648496 A1G_01550 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494390.1 277846 D 392021 CDS YP_001494391.1 157828149 5648497 278384..281101 1 NC_009882.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 281101 5648497 A1G_01555 Rickettsia rickettsii str. 'Sheila Smith' DNA gyrase subunit A YP_001494391.1 278384 D 392021 CDS YP_001494392.1 157828150 5648498 281627..281836 1 NC_009882.1 hypothetical protein 281836 5648498 A1G_01560 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494392.1 281627 D 392021 CDS YP_001494393.1 157828151 5648499 281923..282165 1 NC_009882.1 transporter 282165 5648499 A1G_01565 Rickettsia rickettsii str. 'Sheila Smith' transporter YP_001494393.1 281923 D 392021 CDS YP_001494394.1 157828152 5648500 282877..282996 1 NC_009882.1 hypothetical protein 282996 5648500 A1G_01580 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494394.1 282877 D 392021 CDS YP_001494395.1 157828153 5648501 283121..283303 1 NC_009882.1 hypothetical protein 283303 5648501 A1G_01585 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494395.1 283121 D 392021 CDS YP_001494396.1 157828154 5648502 complement(283330..283482) 1 NC_009882.1 peptide deformylase 283482 def 5648502 def Rickettsia rickettsii str. 'Sheila Smith' peptide deformylase YP_001494396.1 283330 R 392021 CDS YP_001494397.1 157828155 5647853 283754..284281 1 NC_009882.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 284281 def 5647853 def Rickettsia rickettsii str. 'Sheila Smith' peptide deformylase YP_001494397.1 283754 D 392021 CDS YP_001494398.1 157828156 5647854 284293..285189 1 NC_009882.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 285189 fmt 5647854 fmt Rickettsia rickettsii str. 'Sheila Smith' methionyl-tRNA formyltransferase YP_001494398.1 284293 D 392021 CDS YP_001494399.1 157828157 5647855 285406..285849 1 NC_009882.1 COG0147 Anthranilate/para-aminobenzoate synthases component I; hypothetical protein 285849 5647855 A1G_01605 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494399.1 285406 D 392021 CDS YP_001494400.1 157828158 5647857 289631..290197 1 NC_009882.1 COG4421 Capsular polysaccharide biosynthesis protein; hypothetical protein 290197 5647857 A1G_01610 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494400.1 289631 D 392021 CDS YP_001494401.1 157828159 5647858 complement(290356..291408) 1 NC_009882.1 COG1485 Predicted ATPase; putative ATPase n2B 291408 5647858 A1G_01615 Rickettsia rickettsii str. 'Sheila Smith' putative ATPase n2B YP_001494401.1 290356 R 392021 CDS YP_001494402.1 157828160 5647859 complement(291623..292720) 1 NC_009882.1 COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); S-adenosylmethionine--tRNA ribosyltransferase-isomerase 292720 5647859 A1G_01620 Rickettsia rickettsii str. 'Sheila Smith' S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_001494402.1 291623 R 392021 CDS YP_001494403.1 157828161 5647860 292887..293315 1 NC_009882.1 COG0666 FOG: Ankyrin repeat; hypothetical protein 293315 5647860 A1G_01625 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494403.1 292887 D 392021 CDS YP_001494404.1 157828162 5647861 293486..293725 1 NC_009882.1 hypothetical protein 293725 5647861 A1G_01630 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494404.1 293486 D 392021 CDS YP_001494405.1 157828163 5647862 293809..293943 1 NC_009882.1 hypothetical protein 293943 5647862 A1G_01635 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494405.1 293809 D 392021 CDS YP_001494406.1 157828164 5647728 complement(294017..295786) 1 NC_009882.1 COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug resistance ABC transporter ATP-binding protein 295786 5647728 A1G_01640 Rickettsia rickettsii str. 'Sheila Smith' multidrug resistance ABC transporter ATP-binding protein YP_001494406.1 294017 R 392021 CDS YP_001494407.1 157828165 5647729 295966..296238 1 NC_009882.1 hypothetical protein 296238 5647729 A1G_01645 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494407.1 295966 D 392021 CDS YP_001494408.1 157828166 5647730 296390..297760 1 NC_009882.1 COG1271 Cytochrome bd-type quinol oxidase, subunit 1; cytochrome d ubiquinol oxidase subunit I 297760 5647730 A1G_01650 Rickettsia rickettsii str. 'Sheila Smith' cytochrome d ubiquinol oxidase subunit I YP_001494408.1 296390 D 392021 CDS YP_001494409.1 157828167 5647731 297768..298787 1 NC_009882.1 COG1294 Cytochrome bd-type quinol oxidase, subunit 2; cytochrome d ubiquinol oxidase subunit II 298787 5647731 A1G_01655 Rickettsia rickettsii str. 'Sheila Smith' cytochrome d ubiquinol oxidase subunit II YP_001494409.1 297768 D 392021 CDS YP_001494410.1 157828168 5647732 298989..299231 1 NC_009882.1 COG2161 Antitoxin of toxin-antitoxin stability system; hypothetical protein 299231 5647732 A1G_01660 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494410.1 298989 D 392021 CDS YP_001494411.1 157828169 5647733 299242..299502 1 NC_009882.1 COG4115 Uncharacterized protein conserved in bacteria; hypothetical protein 299502 5647733 A1G_01665 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494411.1 299242 D 392021 CDS YP_001494412.1 157828170 5647734 299495..300343 1 NC_009882.1 COG0463 Glycosyltransferases involved in cell wall biogenesis; beta 1,4 glucosyltransferase 300343 5647734 A1G_01670 Rickettsia rickettsii str. 'Sheila Smith' beta 1,4 glucosyltransferase YP_001494412.1 299495 D 392021 CDS YP_001494413.1 157828171 5647735 300420..301658 1 NC_009882.1 COG0612 Predicted Zn-dependent peptidases; hypothetical protein 301658 5647735 A1G_01675 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494413.1 300420 D 392021 CDS YP_001494414.1 157828172 5647736 301812..302522 1 NC_009882.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 302522 5647736 A1G_01680 Rickettsia rickettsii str. 'Sheila Smith' phosphoribosylaminoimidazole-succinocarboxamide synthase YP_001494414.1 301812 D 392021 CDS YP_001494415.1 157828173 5647737 302739..304325 1 NC_009882.1 COG0120 Ribose 5-phosphate isomerase; hypothetical protein 304325 5647737 A1G_01685 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494415.1 302739 D 392021 CDS YP_001494416.1 157828174 5648337 304422..306329 1 NC_009882.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 306329 thrS 5648337 thrS Rickettsia rickettsii str. 'Sheila Smith' threonyl-tRNA synthetase YP_001494416.1 304422 D 392021 CDS YP_001494417.1 157828175 5648338 306786..306929 1 NC_009882.1 hypothetical protein 306929 5648338 A1G_01695 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494417.1 306786 D 392021 CDS YP_001494418.1 157828176 5648339 307015..307128 1 NC_009882.1 COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug ABC transporter ATPase and permease 307128 5648339 A1G_01700 Rickettsia rickettsii str. 'Sheila Smith' multidrug ABC transporter ATPase and permease YP_001494418.1 307015 D 392021 CDS YP_001494419.1 157828177 5648340 complement(308685..309101) 1 NC_009882.1 hypothetical protein 309101 5648340 A1G_01725 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494419.1 308685 R 392021 CDS YP_001494420.1 157828178 5648341 complement(309101..309745) 1 NC_009882.1 hypothetical protein 309745 5648341 A1G_01730 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494420.1 309101 R 392021 CDS YP_001494421.1 157828179 5648342 complement(309738..309836) 1 NC_009882.1 hypothetical protein 309836 5648342 A1G_01735 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494421.1 309738 R 392021 CDS YP_001494422.1 157828180 5648343 complement(310030..310182) 1 NC_009882.1 hypothetical protein 310182 5648343 A1G_01740 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494422.1 310030 R 392021 CDS YP_001494423.1 157828181 5648344 310487..311848 1 NC_009882.1 COG1538 Outer membrane protein; outer membrane protein tolC 311848 5648344 A1G_01745 Rickettsia rickettsii str. 'Sheila Smith' outer membrane protein tolC YP_001494423.1 310487 D 392021 CDS YP_001494424.1 157828182 5648345 311880..312248 1 NC_009882.1 COG3827 Uncharacterized protein conserved in bacteria; hypothetical protein 312248 5648345 A1G_01750 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494424.1 311880 D 392021 CDS YP_001494425.1 157828183 5648346 312257..312475 1 NC_009882.1 hypothetical protein 312475 5648346 A1G_01755 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494425.1 312257 D 392021 CDS YP_001494426.1 157828184 5647790 312465..314186 1 NC_009882.1 COG0666 FOG: Ankyrin repeat; hypothetical protein 314186 5647790 A1G_01760 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494426.1 312465 D 392021 CDS YP_001494427.1 157828185 5647791 314396..316384 1 NC_009882.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 316384 5647791 A1G_01765 Rickettsia rickettsii str. 'Sheila Smith' DNA topoisomerase IV subunit B YP_001494427.1 314396 D 392021 CDS YP_001494428.1 157828186 5647792 316513..317862 1 NC_009882.1 COG0793 Periplasmic protease; tail-specific protease 317862 5647792 A1G_01770 Rickettsia rickettsii str. 'Sheila Smith' tail-specific protease YP_001494428.1 316513 D 392021 CDS YP_001494429.1 157828187 5647793 318077..319570 1 NC_009882.1 COG0642 Signal transduction histidine kinase; histidine kinase sensor protein 319570 5647793 A1G_01775 Rickettsia rickettsii str. 'Sheila Smith' histidine kinase sensor protein YP_001494429.1 318077 D 392021 CDS YP_001494430.1 157828188 5647794 319636..320373 1 NC_009882.1 COG1729 Uncharacterized protein conserved in bacteria; hypothetical protein 320373 5647794 A1G_01780 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494430.1 319636 D 392021 CDS YP_001494431.1 157828189 5647795 320386..321048 1 NC_009882.1 hypothetical protein 321048 5647795 A1G_01785 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494431.1 320386 D 392021 CDS YP_001494432.1 157828190 5647796 321071..322315 1 NC_009882.1 COG1520 FOG: WD40-like repeat; hypothetical protein 322315 5647796 A1G_01790 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494432.1 321071 D 392021 CDS YP_001494433.1 157828191 5647797 322409..322876 1 NC_009882.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 322876 rplM 5647797 rplM Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L13 YP_001494433.1 322409 D 392021 CDS YP_001494434.1 157828192 5647798 322883..323362 1 NC_009882.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 323362 rpsI 5647798 rpsI Rickettsia rickettsii str. 'Sheila Smith' 30S ribosomal protein S9 YP_001494434.1 322883 D 392021 CDS YP_001494435.1 157828193 5647759 324101..324301 1 NC_009882.1 COG2173 D-alanyl-D-alanine dipeptidase; D-alanyl-D-alanine dipeptidase 324301 5647759 A1G_01805 Rickettsia rickettsii str. 'Sheila Smith' D-alanyl-D-alanine dipeptidase YP_001494435.1 324101 D 392021 CDS YP_001494436.1 157828194 5647760 324638..324799 1 NC_009882.1 COG2173 D-alanyl-D-alanine dipeptidase; hypothetical protein 324799 5647760 A1G_01810 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494436.1 324638 D 392021 CDS YP_001494437.1 157828195 5647761 324951..325055 1 NC_009882.1 putative pterin-4-alpha-carbinolamine dehydratase (PHS) 325055 5647761 A1G_01815 Rickettsia rickettsii str. 'Sheila Smith' putative pterin-4-alpha-carbinolamine dehydratase (PHS) YP_001494437.1 324951 D 392021 CDS YP_001494438.1 157828196 5647762 325326..325619 1 NC_009882.1 hypothetical protein 325619 5647762 A1G_01820 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494438.1 325326 D 392021 CDS YP_001494439.1 157828197 5647763 325626..325853 1 NC_009882.1 hypothetical protein 325853 5647763 A1G_01825 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494439.1 325626 D 392021 CDS YP_001494440.1 157828198 5647764 complement(326016..326501) 1 NC_009882.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 326501 5647764 A1G_01830 Rickettsia rickettsii str. 'Sheila Smith' dinucleoside polyphosphate hydrolase YP_001494440.1 326016 R 392021 CDS YP_001494441.1 157828199 5647765 327959..328525 1 NC_009882.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 328525 5647765 A1G_01845 Rickettsia rickettsii str. 'Sheila Smith' elongation factor P YP_001494441.1 327959 D 392021 CDS YP_001494442.1 157828200 5647766 328750..329499 1 NC_009882.1 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family; extragenic suppressor protein suhB 329499 5647766 A1G_01850 Rickettsia rickettsii str. 'Sheila Smith' extragenic suppressor protein suhB YP_001494442.1 328750 D 392021 CDS YP_001494443.1 157828201 5647767 329571..329894 1 NC_009882.1 hypothetical protein 329894 5647767 A1G_01855 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494443.1 329571 D 392021 CDS YP_001494444.1 157828202 5647933 329928..330623 1 NC_009882.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 330623 5647933 A1G_01860 Rickettsia rickettsii str. 'Sheila Smith' phosphatidylserine decarboxylase YP_001494444.1 329928 D 392021 CDS YP_001494445.1 157828203 5647934 330885..331649 1 NC_009882.1 COG1183 Phosphatidylserine synthase; CDP-diacylglycerol--serine O-phosphatidyltransferase 331649 5647934 A1G_01865 Rickettsia rickettsii str. 'Sheila Smith' CDP-diacylglycerol--serine O-phosphatidyltransferase YP_001494445.1 330885 D 392021 CDS YP_001494446.1 157828204 5647935 331643..332710 1 NC_009882.1 COG1566 Multidrug resistance efflux pump; multidrug resistance protein A 332710 5647935 A1G_01870 Rickettsia rickettsii str. 'Sheila Smith' multidrug resistance protein A YP_001494446.1 331643 D 392021 CDS YP_001494447.1 157828205 5647936 333054..333284 1 NC_009882.1 hypothetical protein 333284 5647936 A1G_01875 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494447.1 333054 D 392021 CDS YP_001494448.1 157828206 5647937 333307..333474 1 NC_009882.1 hypothetical protein 333474 5647937 A1G_01880 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494448.1 333307 D 392021 CDS YP_001494449.1 157828207 5647938 complement(333624..333827) 1 NC_009882.1 hypothetical protein 333827 5647938 A1G_01885 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494449.1 333624 R 392021 CDS YP_001494450.1 157828208 5647939 complement(333824..334066) 1 NC_009882.1 COG0271 Stress-induced morphogen (activity unknown); hypothetical protein 334066 5647939 A1G_01890 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494450.1 333824 R 392021 CDS YP_001494451.1 157828209 5647940 334130..335341 1 NC_009882.1 COG2200 FOG: EAL domain; hypothetical protein 335341 5647940 A1G_01895 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494451.1 334130 D 392021 CDS YP_001494452.1 157828210 5647941 335562..337019 1 NC_009882.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 337019 murC 5647941 murC Rickettsia rickettsii str. 'Sheila Smith' UDP-N-acetylmuramate--L-alanine ligase YP_001494452.1 335562 D 392021 CDS YP_001494453.1 157828211 5647942 337241..338128 1 NC_009882.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 338128 murB 5647942 murB Rickettsia rickettsii str. 'Sheila Smith' UDP-N-acetylenolpyruvoylglucosamine reductase YP_001494453.1 337241 D 392021 CDS YP_001494454.1 157828212 5648316 338372..339337 1 NC_009882.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 339337 ddl 5648316 ddl Rickettsia rickettsii str. 'Sheila Smith' D-alanine--D-alanine ligase YP_001494454.1 338372 D 392021 CDS YP_001494455.1 157828213 5648317 339334..340137 1 NC_009882.1 COG1589 Cell division septal protein; cell division protein ftsQ 340137 5648317 A1G_01915 Rickettsia rickettsii str. 'Sheila Smith' cell division protein ftsQ YP_001494455.1 339334 D 392021 CDS YP_001494456.1 157828214 5648318 340265..341500 1 NC_009882.1 COG0849 Actin-like ATPase involved in cell division; cell division protein ftsA 341500 5648318 A1G_01920 Rickettsia rickettsii str. 'Sheila Smith' cell division protein ftsA YP_001494456.1 340265 D 392021 CDS YP_001494457.1 157828215 5648319 complement(341642..342112) 1 NC_009882.1 hypothetical protein 342112 5648319 A1G_01925 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494457.1 341642 R 392021 CDS YP_001494458.1 157828216 5648320 complement(342102..342629) 1 NC_009882.1 COG3474 Cytochrome c2; cytochrome c 342629 5648320 A1G_01930 Rickettsia rickettsii str. 'Sheila Smith' cytochrome c YP_001494458.1 342102 R 392021 CDS YP_001494459.1 157828217 5648321 342742..343812 1 NC_009882.1 hypothetical protein 343812 5648321 A1G_01935 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494459.1 342742 D 392021 CDS YP_001494460.1 157828218 5648322 complement(343821..344696) 1 NC_009882.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 344696 lpxC 5648322 lpxC Rickettsia rickettsii str. 'Sheila Smith' UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_001494460.1 343821 R 392021 CDS YP_001494461.1 157828219 5648323 complement(345054..346202) 1 NC_009882.1 hypothetical protein 346202 5648323 A1G_01945 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494461.1 345054 R 392021 CDS YP_001494462.1 157828220 5648324 346629..348701 1 NC_009882.1 COG1530 Ribonucleases G and E; ribonuclease E 348701 5648324 A1G_01950 Rickettsia rickettsii str. 'Sheila Smith' ribonuclease E YP_001494462.1 346629 D 392021 CDS YP_001494463.1 157828221 5648325 348985..349953 1 NC_009882.1 COG1612 Uncharacterized protein required for cytochrome oxidase assembly; cytochrome c oxidase assembly protein 349953 5648325 A1G_01955 Rickettsia rickettsii str. 'Sheila Smith' cytochrome c oxidase assembly protein YP_001494463.1 348985 D 392021 CDS YP_001494464.1 157828222 5648162 349966..350877 1 NC_009882.1 COG0564 Pseudouridylate synthases, 23S RNA-specific; ribosomal large subunit pseudouridine synthase C 350877 5648162 A1G_01960 Rickettsia rickettsii str. 'Sheila Smith' ribosomal large subunit pseudouridine synthase C YP_001494464.1 349966 D 392021 CDS YP_001494465.1 157828223 5648163 352197..353012 1 NC_009882.1 COG0708 Exonuclease III; exodeoxyribonuclease III 353012 5648163 A1G_01980 Rickettsia rickettsii str. 'Sheila Smith' exodeoxyribonuclease III YP_001494465.1 352197 D 392021 CDS YP_001494466.1 157828224 5648164 353035..354015 1 NC_009882.1 COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit; pyruvate dehydrogenase e1 component subunit alpha 354015 5648164 A1G_01985 Rickettsia rickettsii str. 'Sheila Smith' pyruvate dehydrogenase e1 component subunit alpha YP_001494466.1 353035 D 392021 CDS YP_001494467.1 157828225 5648165 354176..355156 1 NC_009882.1 catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acyltransferase within the complex. The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2); it contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase; pyruvate dehydrogenase subunit beta 355156 5648165 A1G_01990 Rickettsia rickettsii str. 'Sheila Smith' pyruvate dehydrogenase subunit beta YP_001494467.1 354176 D 392021 CDS YP_001494468.1 157828226 5648166 complement(355294..357123) 1 NC_009882.1 COG1217 Predicted membrane GTPase involved in stress response; GTP-binding protein 357123 5648166 A1G_01995 Rickettsia rickettsii str. 'Sheila Smith' GTP-binding protein YP_001494468.1 355294 R 392021 CDS YP_001494469.1 157828227 5648167 357265..357504 1 NC_009882.1 hypothetical protein 357504 5648167 A1G_02000 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494469.1 357265 D 392021 CDS YP_001494470.1 157828228 5648168 357586..357804 1 NC_009882.1 hypothetical protein 357804 5648168 A1G_02005 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494470.1 357586 D 392021 CDS YP_001494471.1 157828229 5648169 357865..358008 1 NC_009882.1 hypothetical protein 358008 5648169 A1G_02010 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494471.1 357865 D 392021 CDS YP_001494472.1 157828230 5648170 358297..358782 1 NC_009882.1 COG2825 Outer membrane protein; hypothetical protein 358782 5648170 A1G_02015 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494472.1 358297 D 392021 CDS YP_001494473.1 157828231 5648171 358959..360410 1 NC_009882.1 catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 360410 5648171 A1G_02020 Rickettsia rickettsii str. 'Sheila Smith' isocitrate dehydrogenase YP_001494473.1 358959 D 392021 CDS YP_001494474.1 157828232 5648172 360525..360845 1 NC_009882.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit G 360845 5648172 A1G_02025 Rickettsia rickettsii str. 'Sheila Smith' putative monovalent cation/H+ antiporter subunit G YP_001494474.1 360525 D 392021 CDS YP_001494475.1 157828233 5647738 360909..361982 1 NC_009882.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit B 361982 5647738 A1G_02030 Rickettsia rickettsii str. 'Sheila Smith' putative monovalent cation/H+ antiporter subunit B YP_001494475.1 360909 D 392021 CDS YP_001494476.1 157828234 5647739 361975..362622 1 NC_009882.1 heme exporter protein B 362622 5647739 A1G_02035 Rickettsia rickettsii str. 'Sheila Smith' heme exporter protein B YP_001494476.1 361975 D 392021 CDS YP_001494477.1 157828235 5647740 362697..363152 1 NC_009882.1 hypothetical protein 363152 5647740 A1G_02040 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494477.1 362697 D 392021 CDS YP_001494478.1 157828236 5647741 363174..363707 1 NC_009882.1 COG0723 Rieske Fe-S protein; cytochrome b6-f complex iron-sulfur subunit 363707 5647741 A1G_02045 Rickettsia rickettsii str. 'Sheila Smith' cytochrome b6-f complex iron-sulfur subunit YP_001494478.1 363174 D 392021 CDS YP_001494479.1 157828237 5647742 363714..364910 1 NC_009882.1 COG1290 Cytochrome b subunit of the bc complex; cytochrome b 364910 5647742 A1G_02050 Rickettsia rickettsii str. 'Sheila Smith' cytochrome b YP_001494479.1 363714 D 392021 CDS YP_001494480.1 157828238 5647743 365220..365294 1 NC_009882.1 hypothetical protein 365294 5647743 A1G_02055 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494480.1 365220 D 392021 CDS YP_001494481.1 157828239 5647744 365498..366166 1 NC_009882.1 COG2857 Cytochrome c1; cytochrome c1, heme protein 366166 5647744 A1G_02060 Rickettsia rickettsii str. 'Sheila Smith' cytochrome c1, heme protein YP_001494481.1 365498 D 392021 CDS YP_001494482.1 157828240 5647745 366726..366896 1 NC_009882.1 COG3067 Na+/H+ antiporter; hypothetical protein 366896 5647745 A1G_02065 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494482.1 366726 D 392021 CDS YP_001494483.1 157828241 5647746 366957..367460 1 NC_009882.1 COG0071 Molecular chaperone (small heat shock protein); heat shock protein 367460 5647746 A1G_02070 Rickettsia rickettsii str. 'Sheila Smith' heat shock protein YP_001494483.1 366957 D 392021 CDS YP_001494484.1 157828242 5647747 complement(367710..367895) 1 NC_009882.1 hypothetical protein 367895 5647747 A1G_02075 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494484.1 367710 R 392021 CDS YP_001494485.1 157828243 5647748 complement(367954..368094) 1 NC_009882.1 hypothetical protein 368094 5647748 A1G_02080 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494485.1 367954 R 392021 CDS YP_001494486.1 157828244 5647749 complement(368326..368613) 1 NC_009882.1 COG4804 Uncharacterized conserved protein; hypothetical protein 368613 5647749 A1G_02085 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494486.1 368326 R 392021 CDS YP_001494487.1 157828245 5647750 complement(368843..369346) 1 NC_009882.1 COG4804 Uncharacterized conserved protein; hypothetical protein 369346 5647750 A1G_02090 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494487.1 368843 R 392021 CDS YP_001494488.1 157828246 5647751 complement(369356..370213) 1 NC_009882.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 370213 prfB 5647751 prfB Rickettsia rickettsii str. 'Sheila Smith' peptide chain release factor 2 YP_001494488.1 369356 R 392021 CDS YP_001494489.1 157828247 5647752 370581..372383 1 NC_009882.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 372383 5647752 A1G_02100 Rickettsia rickettsii str. 'Sheila Smith' GTP-binding protein LepA YP_001494489.1 370581 D 392021 CDS YP_001494490.1 157828248 5647754 complement(372904..373002) 1 NC_009882.1 hypothetical protein 373002 5647754 A1G_02110 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494490.1 372904 R 392021 CDS YP_001494491.1 157828249 5647755 complement(373484..373645) 1 NC_009882.1 outer membrane protein OmpA 373645 5647755 A1G_02115 Rickettsia rickettsii str. 'Sheila Smith' outer membrane protein OmpA YP_001494491.1 373484 R 392021 CDS YP_001494492.1 157828250 5647756 375897..376286 1 NC_009882.1 hypothetical protein 376286 5647756 A1G_02135 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494492.1 375897 D 392021 CDS YP_001494493.1 157828251 5647757 377879..378376 1 NC_009882.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; hypothetical protein 378376 5647757 A1G_02150 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494493.1 377879 D 392021 CDS YP_001494494.1 157828252 5647758 complement(378603..379022) 1 NC_009882.1 COG0477 Permeases of the major facilitator superfamily; MFS type sugar transporter 379022 5647758 A1G_02155 Rickettsia rickettsii str. 'Sheila Smith' MFS type sugar transporter YP_001494494.1 378603 R 392021 CDS YP_001494495.1 157828253 5648451 complement(379469..380569) 1 NC_009882.1 COG0772 Bacterial cell division membrane protein; rod shape-determining protein RodA 380569 5648451 A1G_02160 Rickettsia rickettsii str. 'Sheila Smith' rod shape-determining protein RodA YP_001494495.1 379469 R 392021 CDS YP_001494496.1 157828254 5648452 complement(380725..382905) 1 NC_009882.1 COG1770 Protease II; protease II 382905 5648452 A1G_02165 Rickettsia rickettsii str. 'Sheila Smith' protease II YP_001494496.1 380725 R 392021 CDS YP_001494497.1 157828255 5648453 complement(383091..384629) 1 NC_009882.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 384629 5648453 A1G_02170 Rickettsia rickettsii str. 'Sheila Smith' putative monovalent cation/H+ antiporter subunit D YP_001494497.1 383091 R 392021 CDS YP_001494498.1 157828256 5648454 384409..384507 1 NC_009882.1 hypothetical protein 384507 5648454 A1G_02175 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494498.1 384409 D 392021 CDS YP_001494499.1 157828257 5648455 complement(384631..385035) 1 NC_009882.1 COG1487 Predicted nucleic acid-binding protein, contains PIN domain; hypothetical protein 385035 5648455 A1G_02180 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494499.1 384631 R 392021 CDS YP_001494500.1 157828258 5648456 complement(385026..385313) 1 NC_009882.1 hypothetical protein 385313 5648456 A1G_02185 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494500.1 385026 R 392021 CDS YP_001494501.1 157828259 5648457 complement(385500..386963) 1 NC_009882.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 386963 5648457 A1G_02190 Rickettsia rickettsii str. 'Sheila Smith' putative monovalent cation/H+ antiporter subunit D YP_001494501.1 385500 R 392021 CDS YP_001494502.1 157828260 5648458 complement(387110..388225) 1 NC_009882.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 388225 5648458 A1G_02195 Rickettsia rickettsii str. 'Sheila Smith' putative monovalent cation/H+ antiporter subunit D YP_001494502.1 387110 R 392021 CDS YP_001494503.1 157828261 5648459 complement(388408..388743) 1 NC_009882.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 388743 5648459 A1G_02200 Rickettsia rickettsii str. 'Sheila Smith' putative monovalent cation/H+ antiporter subunit C YP_001494503.1 388408 R 392021 CDS YP_001494504.1 157828262 5648460 complement(388822..389574) 1 NC_009882.1 COG3504 Type IV secretory pathway, VirB9 components; VirB9 protein 389574 5648460 A1G_02205 Rickettsia rickettsii str. 'Sheila Smith' VirB9 protein YP_001494504.1 388822 R 392021 CDS YP_001494505.1 157828263 5648461 complement(389576..390274) 1 NC_009882.1 COG3736 Type IV secretory pathway, component VirB8; virB8 protein 390274 5648461 A1G_02210 Rickettsia rickettsii str. 'Sheila Smith' virB8 protein YP_001494505.1 389576 R 392021 CDS YP_001494506.1 157828264 5648264 390739..390918 1 NC_009882.1 hypothetical protein 390918 5648264 A1G_02215 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494506.1 390739 D 392021 CDS YP_001494507.1 157828265 5648265 390968..391699 1 NC_009882.1 COG3736 Type IV secretory pathway, component VirB8; hypothetical protein 391699 5648265 A1G_02220 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494507.1 390968 D 392021 CDS YP_001494508.1 157828266 5648266 391686..392159 1 NC_009882.1 COG3504 Type IV secretory pathway, VirB9 components; virB9 protein 392159 5648266 A1G_02225 Rickettsia rickettsii str. 'Sheila Smith' virB9 protein YP_001494508.1 391686 D 392021 CDS YP_001494509.1 157828267 5648267 392342..393790 1 NC_009882.1 COG2948 Type IV secretory pathway, VirB10 components; virB10 protein 393790 5648267 A1G_02230 Rickettsia rickettsii str. 'Sheila Smith' virB10 protein YP_001494509.1 392342 D 392021 CDS YP_001494510.1 157828268 5648268 393787..394791 1 NC_009882.1 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis; type IV secretion system ATPase VirB11 394791 5648268 A1G_02235 Rickettsia rickettsii str. 'Sheila Smith' type IV secretion system ATPase VirB11 YP_001494510.1 393787 D 392021 CDS YP_001494511.1 157828269 5648269 394925..396700 1 NC_009882.1 COG3505 Type IV secretory pathway, VirD4 components; type IV secretion system protein VirB8 396700 5648269 A1G_02240 Rickettsia rickettsii str. 'Sheila Smith' type IV secretion system protein VirB8 YP_001494511.1 394925 D 392021 CDS YP_001494512.1 157828270 5648270 396693..398114 1 NC_009882.1 COG0248 Exopolyphosphatase; guanosine pentaphosphate phosphohydrolase 398114 5648270 A1G_02245 Rickettsia rickettsii str. 'Sheila Smith' guanosine pentaphosphate phosphohydrolase YP_001494512.1 396693 D 392021 CDS YP_001494513.1 157828271 5648271 complement(398328..398639) 1 NC_009882.1 hypothetical protein 398639 5648271 A1G_02250 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494513.1 398328 R 392021 CDS YP_001494514.1 157828272 5648272 complement(399575..399814) 1 NC_009882.1 hypothetical protein 399814 5648272 A1G_02255 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494514.1 399575 R 392021 CDS YP_001494515.1 157828273 5648273 complement(400518..400802) 1 NC_009882.1 hypothetical protein 400802 5648273 A1G_02270 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494515.1 400518 R 392021 CDS YP_001494516.1 157828274 5648274 401044..401928 1 NC_009882.1 hypothetical protein 401928 5648274 A1G_02275 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494516.1 401044 D 392021 CDS YP_001494517.1 157828275 5648651 401891..402736 1 NC_009882.1 hypothetical protein 402736 5648651 A1G_02280 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494517.1 401891 D 392021 CDS YP_001494518.1 157828276 5648652 402739..403515 1 NC_009882.1 COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase; cysQ protein 403515 5648652 A1G_02285 Rickettsia rickettsii str. 'Sheila Smith' cysQ protein YP_001494518.1 402739 D 392021 CDS YP_001494519.1 157828277 5648653 complement(403655..406315) 1 NC_009882.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 406315 5648653 A1G_02290 Rickettsia rickettsii str. 'Sheila Smith' DNA mismatch repair protein MutS YP_001494519.1 403655 R 392021 CDS YP_001494520.1 157828278 5648654 complement(406498..406932) 1 NC_009882.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B 406932 5648654 A1G_02295 Rickettsia rickettsii str. 'Sheila Smith' ribose-5-phosphate isomerase B YP_001494520.1 406498 R 392021 CDS YP_001494521.1 157828279 5648655 407020..407658 1 NC_009882.1 COG0739 Membrane proteins related to metalloendopeptidases; outer membrane antigenic lipoprotein B precursor 407658 5648655 A1G_02300 Rickettsia rickettsii str. 'Sheila Smith' outer membrane antigenic lipoprotein B precursor YP_001494521.1 407020 D 392021 CDS YP_001494522.1 157828280 5648656 407659..408351 1 NC_009882.1 COG1451 Predicted metal-dependent hydrolase; hypothetical protein 408351 5648656 A1G_02305 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494522.1 407659 D 392021 CDS YP_001494523.1 157828281 5648657 408460..409344 1 NC_009882.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 409344 thyX 5648657 thyX Rickettsia rickettsii str. 'Sheila Smith' FAD-dependent thymidylate synthase YP_001494523.1 408460 D 392021 CDS YP_001494524.1 157828282 5648658 409419..410753 1 NC_009882.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 410753 tolB 5648658 tolB Rickettsia rickettsii str. 'Sheila Smith' translocation protein TolB YP_001494524.1 409419 D 392021 CDS YP_001494525.1 157828283 5648659 complement(410892..411773) 1 NC_009882.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 411773 5648659 A1G_02320 Rickettsia rickettsii str. 'Sheila Smith' RNA polymerase factor sigma-32 YP_001494525.1 410892 R 392021 CDS YP_001494526.1 157828284 5648660 411875..412441 1 NC_009882.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 412441 5648660 A1G_02325 Rickettsia rickettsii str. 'Sheila Smith' cytochrome C oxidase assembly protein YP_001494526.1 411875 D 392021 CDS YP_001494527.1 157828285 5648661 complement(412539..413519) 1 NC_009882.1 COG0457 FOG: TPR repeat; hypothetical protein 413519 5648661 A1G_02330 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494527.1 412539 R 392021 CDS YP_001494528.1 157828286 5648706 413781..414878 1 NC_009882.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 414878 mnmA 5648706 mnmA Rickettsia rickettsii str. 'Sheila Smith' tRNA-specific 2-thiouridylase MnmA YP_001494528.1 413781 D 392021 CDS YP_001494529.1 157828287 5648707 414881..415036 1 NC_009882.1 hypothetical protein 415036 5648707 A1G_02340 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494529.1 414881 D 392021 CDS YP_001494530.1 157828288 5648708 415008..416405 1 NC_009882.1 COG0531 Amino acid transporters; cationic amino acid transporter-1 416405 5648708 A1G_02345 Rickettsia rickettsii str. 'Sheila Smith' cationic amino acid transporter-1 YP_001494530.1 415008 D 392021 CDS YP_001494531.1 157828289 5648709 416586..417800 1 NC_009882.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 417800 hisS 5648709 hisS Rickettsia rickettsii str. 'Sheila Smith' histidyl-tRNA synthetase YP_001494531.1 416586 D 392021 CDS YP_001494532.1 157828290 5648710 418204..418479 1 NC_009882.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein 418479 5648710 A1G_02355 Rickettsia rickettsii str. 'Sheila Smith' ABC transporter ATP-binding protein YP_001494532.1 418204 D 392021 CDS YP_001494533.1 157828291 5648711 418652..418861 1 NC_009882.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains; hypothetical protein 418861 5648711 A1G_02360 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494533.1 418652 D 392021 CDS YP_001494534.1 157828292 5648712 complement(419282..419725) 1 NC_009882.1 hypothetical protein 419725 5648712 A1G_02365 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494534.1 419282 R 392021 CDS YP_001494535.1 157828293 5648713 complement(420906..421175) 1 NC_009882.1 hypothetical protein 421175 5648713 A1G_02380 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494535.1 420906 R 392021 CDS YP_001494536.1 157828294 5648714 complement(421487..421714) 1 NC_009882.1 hypothetical protein 421714 5648714 A1G_02385 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494536.1 421487 R 392021 CDS YP_001494537.1 157828295 5648715 complement(421757..421939) 1 NC_009882.1 hypothetical protein 421939 5648715 A1G_02390 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494537.1 421757 R 392021 CDS YP_001494538.1 157828296 5648716 complement(422102..422320) 1 NC_009882.1 hypothetical protein 422320 5648716 A1G_02395 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494538.1 422102 R 392021 CDS YP_001494539.1 157828297 5647663 422674..423399 1 NC_009882.1 COG0811 Biopolymer transport proteins; tolQ protein 423399 5647663 A1G_02400 Rickettsia rickettsii str. 'Sheila Smith' tolQ protein YP_001494539.1 422674 D 392021 CDS YP_001494540.1 157828298 5647664 423399..423830 1 NC_009882.1 COG0848 Biopolymer transport protein; tolR protein 423830 5647664 A1G_02405 Rickettsia rickettsii str. 'Sheila Smith' tolR protein YP_001494540.1 423399 D 392021 CDS YP_001494541.1 157828299 5647665 423820..424791 1 NC_009882.1 periplasmic protein TonB 424791 5647665 A1G_02410 Rickettsia rickettsii str. 'Sheila Smith' periplasmic protein TonB YP_001494541.1 423820 D 392021 CDS YP_001494542.1 157828300 5647666 complement(424989..425186) 1 NC_009882.1 hypothetical protein 425186 5647666 A1G_02415 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494542.1 424989 R 392021 CDS YP_001494543.1 157828301 5647667 425710..426417 1 NC_009882.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; hypothetical protein 426417 5647667 A1G_02420 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494543.1 425710 D 392021 CDS YP_001494544.1 157828302 5647668 complement(426368..427684) 1 NC_009882.1 COG0477 Permeases of the major facilitator superfamily; proline/betaine transporter 427684 5647668 A1G_02425 Rickettsia rickettsii str. 'Sheila Smith' proline/betaine transporter YP_001494544.1 426368 R 392021 CDS YP_001494545.1 157828303 5647669 complement(427823..429358) 1 NC_009882.1 COG0845 Membrane-fusion protein; alkaline protease secretion protein AprE 429358 5647669 A1G_02430 Rickettsia rickettsii str. 'Sheila Smith' alkaline protease secretion protein AprE YP_001494545.1 427823 R 392021 CDS YP_001494546.1 157828304 5647670 complement(429542..431296) 1 NC_009882.1 COG4618 ABC-type protease/lipase transport system, ATPase and permease components; alkaline protease secretion ATP-binding protein AprD 431296 5647670 A1G_02435 Rickettsia rickettsii str. 'Sheila Smith' alkaline protease secretion ATP-binding protein AprD YP_001494546.1 429542 R 392021 CDS YP_001494547.1 157828305 5647671 complement(431305..432321) 1 NC_009882.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 432321 5647671 A1G_02440 Rickettsia rickettsii str. 'Sheila Smith' aspartate-semialdehyde dehydrogenase YP_001494547.1 431305 R 392021 CDS YP_001494548.1 157828306 5647672 complement(432314..432673) 1 NC_009882.1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; protein kinase C inhibitor 1 432673 5647672 A1G_02445 Rickettsia rickettsii str. 'Sheila Smith' protein kinase C inhibitor 1 YP_001494548.1 432314 R 392021 CDS YP_001494549.1 157828307 5647673 complement(432871..433224) 1 NC_009882.1 hypothetical protein 433224 5647673 A1G_02450 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494549.1 432871 R 392021 CDS YP_001494550.1 157828308 5648007 433478..434026 1 NC_009882.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 434026 5648007 A1G_02455 Rickettsia rickettsii str. 'Sheila Smith' ATP-dependent protease peptidase subunit YP_001494550.1 433478 D 392021 CDS YP_001494551.1 157828309 5648008 434023..435375 1 NC_009882.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 435375 hslU 5648008 hslU Rickettsia rickettsii str. 'Sheila Smith' ATP-dependent protease ATP-binding subunit HslU YP_001494551.1 434023 D 392021 CDS YP_001494552.1 157828310 5648009 436964..437104 1 NC_009882.1 hypothetical protein 437104 5648009 A1G_02475 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494552.1 436964 D 392021 CDS YP_001494553.1 157828311 5648010 437161..437346 1 NC_009882.1 hypothetical protein 437346 5648010 A1G_02480 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494553.1 437161 D 392021 CDS YP_001494554.1 157828312 5648011 437322..437912 1 NC_009882.1 COG5464 Uncharacterized conserved protein; hypothetical protein 437912 5648011 A1G_02485 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494554.1 437322 D 392021 CDS YP_001494555.1 157828313 5648012 437922..439262 1 NC_009882.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 439262 lpxB 5648012 lpxB Rickettsia rickettsii str. 'Sheila Smith' lipid-A-disaccharide synthase YP_001494555.1 437922 D 392021 CDS YP_001494556.1 157828314 5648013 complement(439259..439531) 1 NC_009882.1 hypothetical protein 439531 5648013 A1G_02495 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494556.1 439259 R 392021 CDS YP_001494557.1 157828315 5648014 439880..440899 1 NC_009882.1 COG1559 Predicted periplasmic solute-binding protein; hypothetical protein 440899 5648014 A1G_02500 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494557.1 439880 D 392021 CDS YP_001494558.1 157828316 5648015 441039..441350 1 NC_009882.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 441350 cyaY 5648015 cyaY Rickettsia rickettsii str. 'Sheila Smith' frataxin-like protein YP_001494558.1 441039 D 392021 CDS YP_001494559.1 157828317 5648016 442465..442941 1 NC_009882.1 hypothetical protein 442941 5648016 A1G_02520 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494559.1 442465 D 392021 CDS YP_001494560.1 157828318 5648017 443651..444028 1 NC_009882.1 hypothetical protein 444028 5648017 A1G_02525 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494560.1 443651 D 392021 CDS YP_001494561.1 157828319 5647974 444127..444321 1 NC_009882.1 hypothetical protein 444321 5647974 A1G_02530 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494561.1 444127 D 392021 CDS YP_001494562.1 157828320 5647975 complement(444421..445764) 1 NC_009882.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 445764 gltX 5647975 gltX Rickettsia rickettsii str. 'Sheila Smith' glutamyl-tRNA synthetase YP_001494562.1 444421 R 392021 CDS YP_001494563.1 157828321 5647976 complement(445873..448203) 1 NC_009882.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 448203 5647976 A1G_02540 Rickettsia rickettsii str. 'Sheila Smith' DNA topoisomerase I YP_001494563.1 445873 R 392021 CDS YP_001494564.1 157828322 5647977 complement(449622..450224) 1 NC_009882.1 COG0450 Peroxiredoxin; thioredoxin peroxidase 1 450224 5647977 A1G_02555 Rickettsia rickettsii str. 'Sheila Smith' thioredoxin peroxidase 1 YP_001494564.1 449622 R 392021 CDS YP_001494565.1 157828323 5647978 complement(450306..451244) 1 NC_009882.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs; hypothetical protein 451244 5647978 A1G_02560 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494565.1 450306 R 392021 CDS YP_001494566.1 157828324 5647979 complement(451318..451548) 1 NC_009882.1 COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; hypothetical protein 451548 5647979 A1G_02565 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494566.1 451318 R 392021 CDS YP_001494567.1 157828325 5647980 complement(451615..453183) 1 NC_009882.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase; hypothetical protein 453183 5647980 A1G_02570 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494567.1 451615 R 392021 CDS YP_001494568.1 157828326 5647981 453219..453683 1 NC_009882.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 453683 5647981 A1G_02575 Rickettsia rickettsii str. 'Sheila Smith' Holliday junction resolvase-like protein YP_001494568.1 453219 D 392021 CDS YP_001494569.1 157828327 5647982 453950..454111 1 NC_009882.1 COG3093 Plasmid maintenance system antidote protein; plasmid maintenance system antidote protein 454111 5647982 A1G_02580 Rickettsia rickettsii str. 'Sheila Smith' plasmid maintenance system antidote protein YP_001494569.1 453950 D 392021 CDS YP_001494570.1 157828328 5647983 454095..454184 1 NC_009882.1 hypothetical protein 454184 5647983 A1G_02585 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494570.1 454095 D 392021 CDS YP_001494571.1 157828329 5647984 454282..455136 1 NC_009882.1 COG1091 dTDP-4-dehydrorhamnose reductase; putative dTDP-4-dehydrorhamnose reductase 455136 5647984 A1G_02590 Rickettsia rickettsii str. 'Sheila Smith' putative dTDP-4-dehydrorhamnose reductase YP_001494571.1 454282 D 392021 CDS YP_001494572.1 157828330 5648421 455319..456344 1 NC_009882.1 COG1086 Predicted nucleoside-diphosphate sugar epimerases; capD protein 456344 5648421 A1G_02595 Rickettsia rickettsii str. 'Sheila Smith' capD protein YP_001494572.1 455319 D 392021 CDS YP_001494573.1 157828331 5648422 456337..457470 1 NC_009882.1 COG0381 UDP-N-acetylglucosamine 2-epimerase; putative UDP-N-acetylglucosamine 2-epimerase 457470 5648422 A1G_02600 Rickettsia rickettsii str. 'Sheila Smith' putative UDP-N-acetylglucosamine 2-epimerase YP_001494573.1 456337 D 392021 CDS YP_001494574.1 157828332 5648423 457439..458776 1 NC_009882.1 hypothetical protein 458776 5648423 A1G_02605 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494574.1 457439 D 392021 CDS YP_001494575.1 157828333 5648424 458792..459277 1 NC_009882.1 COG0500 SAM-dependent methyltransferases; hypothetical protein 459277 5648424 A1G_02610 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494575.1 458792 D 392021 CDS YP_001494576.1 157828334 5648425 459797..461527 1 NC_009882.1 COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyltransferase 461527 5648425 A1G_02615 Rickettsia rickettsii str. 'Sheila Smith' glycosyltransferase YP_001494576.1 459797 D 392021 CDS YP_001494577.1 157828335 5648426 complement(461532..462530) 1 NC_009882.1 COG0845 Membrane-fusion protein; hypothetical protein 462530 5648426 A1G_02620 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494577.1 461532 R 392021 CDS YP_001494578.1 157828336 5648427 complement(462623..463417) 1 NC_009882.1 hypothetical protein 463417 5648427 A1G_02625 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494578.1 462623 R 392021 CDS YP_001494579.1 157828337 5648428 complement(463427..464194) 1 NC_009882.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); hypothetical protein 464194 5648428 A1G_02630 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494579.1 463427 R 392021 CDS YP_001494580.1 157828338 5648429 464227..465399 1 NC_009882.1 COG0438 Glycosyltransferase; glycosyltransferase 465399 5648429 A1G_02635 Rickettsia rickettsii str. 'Sheila Smith' glycosyltransferase YP_001494580.1 464227 D 392021 CDS YP_001494581.1 157828339 5648430 complement(465886..466089) 1 NC_009882.1 hypothetical protein 466089 5648430 A1G_02640 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494581.1 465886 R 392021 CDS YP_001494582.1 157828340 5648431 complement(466222..466509) 1 NC_009882.1 hypothetical protein 466509 5648431 A1G_02645 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494582.1 466222 R 392021 CDS YP_001494583.1 157828341 5647696 complement(467831..468448) 1 NC_009882.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 468448 rpsD 5647696 rpsD Rickettsia rickettsii str. 'Sheila Smith' 30S ribosomal protein S4 YP_001494583.1 467831 R 392021 CDS YP_001494584.1 157828342 5647697 468573..469490 1 NC_009882.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 469490 5647697 A1G_02655 Rickettsia rickettsii str. 'Sheila Smith' protoheme IX farnesyltransferase YP_001494584.1 468573 D 392021 CDS YP_001494585.1 157828343 5647698 complement(469772..470440) 1 NC_009882.1 COG1533 DNA repair photolyase; putative lyase 470440 5647698 A1G_02660 Rickettsia rickettsii str. 'Sheila Smith' putative lyase YP_001494585.1 469772 R 392021 CDS YP_001494586.1 157828344 5647699 470640..470855 1 NC_009882.1 hypothetical protein 470855 5647699 A1G_02665 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494586.1 470640 D 392021 CDS YP_001494587.1 157828345 5647700 470927..471361 1 NC_009882.1 COG0457 FOG: TPR repeat; hypothetical protein 471361 5647700 A1G_02670 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494587.1 470927 D 392021 CDS YP_001494588.1 157828346 5647701 complement(471502..473994) 1 NC_009882.1 COG2982 Uncharacterized protein involved in outer membrane biogenesis; outer membrane assembly protein 473994 5647701 A1G_02675 Rickettsia rickettsii str. 'Sheila Smith' outer membrane assembly protein YP_001494588.1 471502 R 392021 CDS YP_001494589.1 157828347 5647702 complement(474342..474839) 1 NC_009882.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 474839 rimM 5647702 rimM Rickettsia rickettsii str. 'Sheila Smith' 16S rRNA-processing protein RimM YP_001494589.1 474342 R 392021 CDS YP_001494590.1 157828348 5647703 474902..477532 1 NC_009882.1 hypothetical protein 477532 5647703 A1G_02685 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494590.1 474902 D 392021 CDS YP_001494591.1 157828349 5647704 477545..477787 1 NC_009882.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 477787 5647704 A1G_02690 Rickettsia rickettsii str. 'Sheila Smith' exodeoxyribonuclease VII small subunit YP_001494591.1 477545 D 392021 CDS YP_001494592.1 157828350 5647705 477935..478399 1 NC_009882.1 COG5304 Uncharacterized protein conserved in bacteria; hypothetical protein 478399 5647705 A1G_02695 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494592.1 477935 D 392021 CDS YP_001494593.1 157828351 5647706 complement(479139..479690) 1 NC_009882.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 479690 5647706 A1G_02715 Rickettsia rickettsii str. 'Sheila Smith' 3-methyladenine DNA glycosylase YP_001494593.1 479139 R 392021 CDS YP_001494594.1 157828352 5648295 complement(479683..479886) 1 NC_009882.1 COG2350 Uncharacterized protein conserved in bacteria; hypothetical protein 479886 5648295 A1G_02720 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494594.1 479683 R 392021 CDS YP_001494595.1 157828353 5648296 479917..480069 1 NC_009882.1 hypothetical protein 480069 5648296 A1G_02725 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494595.1 479917 D 392021 CDS YP_001494596.1 157828354 5648297 complement(479991..480236) 1 NC_009882.1 COG0759 Uncharacterized conserved protein; hypothetical protein 480236 5648297 A1G_02730 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494596.1 479991 R 392021 CDS YP_001494597.1 157828355 5648298 complement(480229..480732) 1 NC_009882.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 480732 5648298 A1G_02735 Rickettsia rickettsii str. 'Sheila Smith' NADH dehydrogenase subunit E YP_001494597.1 480229 R 392021 CDS YP_001494598.1 157828356 5648299 complement(481145..482320) 1 NC_009882.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 482320 5648299 A1G_02740 Rickettsia rickettsii str. 'Sheila Smith' NADH dehydrogenase subunit D YP_001494598.1 481145 R 392021 CDS YP_001494599.1 157828357 5648300 complement(482419..483147) 1 NC_009882.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C 483147 5648300 A1G_02745 Rickettsia rickettsii str. 'Sheila Smith' NADH dehydrogenase subunit C YP_001494599.1 482419 R 392021 CDS YP_001494600.1 157828358 5648301 complement(483125..483649) 1 NC_009882.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 483649 5648301 A1G_02750 Rickettsia rickettsii str. 'Sheila Smith' NADH dehydrogenase subunit B YP_001494600.1 483125 R 392021 CDS YP_001494601.1 157828359 5648302 complement(483654..484184) 1 NC_009882.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 484184 5648302 A1G_02755 Rickettsia rickettsii str. 'Sheila Smith' NADH dehydrogenase subunit A YP_001494601.1 483654 R 392021 CDS YP_001494602.1 157828360 5648303 complement(484184..485419) 1 NC_009882.1 COG3307 Lipid A core - O-antigen ligase and related enzymes; hypothetical protein 485419 5648303 A1G_02760 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494602.1 484184 R 392021 CDS YP_001494603.1 157828361 5648304 complement(485420..485893) 1 NC_009882.1 COG4765 Uncharacterized protein conserved in bacteria; hypothetical protein 485893 5648304 A1G_02765 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494603.1 485420 R 392021 CDS YP_001494604.1 157828362 5647442 487702..488622 1 NC_009882.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 488622 xerD 5647442 xerD Rickettsia rickettsii str. 'Sheila Smith' site-specific tyrosine recombinase XerD YP_001494604.1 487702 D 392021 CDS YP_001494605.1 157828363 5647443 488723..489724 1 NC_009882.1 hypothetical protein 489724 5647443 A1G_02790 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494605.1 488723 D 392021 CDS YP_001494606.1 157828364 5647444 489832..490995 1 NC_009882.1 hypothetical protein 490995 5647444 A1G_02795 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494606.1 489832 D 392021 CDS YP_001494607.1 157828365 5647445 complement(491192..491974) 1 NC_009882.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 491974 5647445 A1G_02800 Rickettsia rickettsii str. 'Sheila Smith' enoyl-(acyl carrier protein) reductase YP_001494607.1 491192 R 392021 CDS YP_001494608.1 157828366 5647446 492050..493549 1 NC_009882.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 493549 lnt 5647446 lnt Rickettsia rickettsii str. 'Sheila Smith' apolipoprotein N-acyltransferase YP_001494608.1 492050 D 392021 CDS YP_001494609.1 157828367 5647447 493668..493814 1 NC_009882.1 hypothetical protein 493814 5647447 A1G_02810 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494609.1 493668 D 392021 CDS YP_001494610.1 157828368 5647448 494253..495056 1 NC_009882.1 COG3023 Negative regulator of beta-lactamase expression; hypothetical protein 495056 5647448 A1G_02815 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494610.1 494253 D 392021 CDS YP_001494611.1 157828369 5647449 495812..496729 1 NC_009882.1 COG2984 ABC-type uncharacterized transport system, periplasmic component; hypothetical protein 496729 5647449 A1G_02820 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494611.1 495812 D 392021 CDS YP_001494612.1 157828370 5647450 496734..497573 1 NC_009882.1 COG4120 ABC-type uncharacterized transport system, permease component; ABC transporter permease 497573 5647450 A1G_02825 Rickettsia rickettsii str. 'Sheila Smith' ABC transporter permease YP_001494612.1 496734 D 392021 CDS YP_001494613.1 157828371 5647451 497570..498292 1 NC_009882.1 COG1101 ABC-type uncharacterized transport system, ATPase component; putative ABC transporter ATP-binding protein 498292 5647451 A1G_02830 Rickettsia rickettsii str. 'Sheila Smith' putative ABC transporter ATP-binding protein YP_001494613.1 497570 D 392021 CDS YP_001494614.1 157828372 5647600 complement(498383..498787) 1 NC_009882.1 hypothetical protein 498787 5647600 A1G_02835 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494614.1 498383 R 392021 CDS YP_001494615.1 157828373 5647601 complement(498807..499229) 1 NC_009882.1 COG0666 FOG: Ankyrin repeat; hypothetical protein 499229 5647601 A1G_02840 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494615.1 498807 R 392021 CDS YP_001494616.1 157828374 5647602 499480..499632 1 NC_009882.1 hypothetical protein 499632 5647602 A1G_02845 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494616.1 499480 D 392021 CDS YP_001494617.1 157828375 5647603 complement(499601..499753) 1 NC_009882.1 hypothetical protein 499753 5647603 A1G_02850 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494617.1 499601 R 392021 CDS YP_001494618.1 157828376 5647604 complement(499849..499980) 1 NC_009882.1 hypothetical protein 499980 5647604 A1G_02855 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494618.1 499849 R 392021 CDS YP_001494619.1 157828377 5647605 complement(500071..500589) 1 NC_009882.1 COG1495 Disulfide bond formation protein DsbB; hypothetical protein 500589 5647605 A1G_02860 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494619.1 500071 R 392021 CDS YP_001494620.1 157828378 5647606 500770..502338 1 NC_009882.1 class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase 502338 lysK 5647606 lysK Rickettsia rickettsii str. 'Sheila Smith' lysyl-tRNA synthetase YP_001494620.1 500770 D 392021 CDS YP_001494621.1 157828379 5647607 502472..503404 1 NC_009882.1 COG0679 Predicted permeases; hypothetical protein 503404 5647607 A1G_02870 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494621.1 502472 D 392021 CDS YP_001494622.1 157828380 5647608 503544..505844 1 NC_009882.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 505844 5647608 A1G_02875 Rickettsia rickettsii str. 'Sheila Smith' malic enzyme YP_001494622.1 503544 D 392021 CDS YP_001494623.1 157828381 5647609 505885..506277 1 NC_009882.1 hypothetical protein 506277 5647609 A1G_02880 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494623.1 505885 D 392021 CDS YP_001494624.1 157828382 5647610 506448..506747 1 NC_009882.1 hypothetical protein 506747 5647610 A1G_02885 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494624.1 506448 D 392021 CDS YP_001494625.1 157828383 5648224 complement(506953..507339) 1 NC_009882.1 COG4374 Uncharacterized protein conserved in bacteria; hypothetical protein 507339 5648224 A1G_02890 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494625.1 506953 R 392021 CDS YP_001494626.1 157828384 5648225 complement(507332..507580) 1 NC_009882.1 COG2002 Regulators of stationary/sporulation gene expression; hypothetical protein 507580 5648225 A1G_02895 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494626.1 507332 R 392021 CDS YP_001494627.1 157828385 5648226 507813..509030 1 NC_009882.1 COG0477 Permeases of the major facilitator superfamily; proline/betaine transporter 509030 5648226 A1G_02900 Rickettsia rickettsii str. 'Sheila Smith' proline/betaine transporter YP_001494627.1 507813 D 392021 CDS YP_001494628.1 157828386 5648227 complement(509229..509414) 1 NC_009882.1 hypothetical protein 509414 5648227 A1G_02905 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494628.1 509229 R 392021 CDS YP_001494629.1 157828387 5648228 complement(509550..509879) 1 NC_009882.1 hypothetical protein 509879 5648228 A1G_02910 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494629.1 509550 R 392021 CDS YP_001494630.1 157828388 5648229 complement(509911..510126) 1 NC_009882.1 hypothetical protein 510126 5648229 A1G_02915 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494630.1 509911 R 392021 CDS YP_001494631.1 157828389 5648230 complement(510172..510498) 1 NC_009882.1 COG0541 Signal recognition particle GTPase; hypothetical protein 510498 5648230 A1G_02920 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494631.1 510172 R 392021 CDS YP_001494632.1 157828390 5648231 511024..511254 1 NC_009882.1 hypothetical protein 511254 5648231 A1G_02925 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494632.1 511024 D 392021 CDS YP_001494633.1 157828391 5648232 complement(511885..511977) 1 NC_009882.1 hypothetical protein 511977 5648232 A1G_02940 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494633.1 511885 R 392021 CDS YP_001494634.1 157828392 5648233 complement(512056..512409) 1 NC_009882.1 hypothetical protein 512409 5648233 A1G_02945 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494634.1 512056 R 392021 CDS YP_001494635.1 157828393 5648234 complement(512542..513486) 1 NC_009882.1 Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 513486 5648234 A1G_02950 Rickettsia rickettsii str. 'Sheila Smith' malate dehydrogenase YP_001494635.1 512542 R 392021 CDS YP_001494636.1 157828394 5647924 513850..514026 1 NC_009882.1 COG0666 FOG: Ankyrin repeat; ankyrin repeat-containing protein 514026 5647924 A1G_02955 Rickettsia rickettsii str. 'Sheila Smith' ankyrin repeat-containing protein YP_001494636.1 513850 D 392021 CDS YP_001494637.1 157828395 5647925 514056..514307 1 NC_009882.1 COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; ankyrin repeat-containing protein 514307 5647925 A1G_02960 Rickettsia rickettsii str. 'Sheila Smith' ankyrin repeat-containing protein YP_001494637.1 514056 D 392021 CDS YP_001494638.1 157828396 5647926 complement(514941..516464) 1 NC_009882.1 COG3202 ATP/ADP translocase; ADP,ATP carrier protein 516464 5647926 A1G_02965 Rickettsia rickettsii str. 'Sheila Smith' ADP,ATP carrier protein YP_001494638.1 514941 R 392021 CDS YP_001494639.1 157828397 5647927 complement(516674..518287) 1 NC_009882.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 518287 pyrG 5647927 pyrG Rickettsia rickettsii str. 'Sheila Smith' CTP synthetase YP_001494639.1 516674 R 392021 CDS YP_001494640.1 157828398 5647928 complement(518290..519015) 1 NC_009882.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 519015 5647928 A1G_02975 Rickettsia rickettsii str. 'Sheila Smith' 3-deoxy-manno-octulosonate cytidylyltransferase YP_001494640.1 518290 R 392021 CDS YP_001494641.1 157828399 5647931 519415..519522 1 NC_009882.1 hypothetical protein 519522 5647931 A1G_02980 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494641.1 519415 D 392021 CDS YP_001494642.1 157828400 5647932 520257..521780 1 NC_009882.1 hypothetical protein 521780 5647932 A1G_02985 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494642.1 520257 D 392021 CDS YP_001494643.1 157828401 5648235 521773..522342 1 NC_009882.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 522342 folE 5648235 folE Rickettsia rickettsii str. 'Sheila Smith' GTP cyclohydrolase I YP_001494643.1 521773 D 392021 CDS YP_001494644.1 157828402 5648236 522507..523787 1 NC_009882.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 523787 5648236 A1G_02995 Rickettsia rickettsii str. 'Sheila Smith' prolyl-tRNA synthetase YP_001494644.1 522507 D 392021 CDS YP_001494645.1 157828403 5648237 524000..524968 1 NC_009882.1 COG3177 Uncharacterized conserved protein; hypothetical protein 524968 5648237 A1G_03000 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494645.1 524000 D 392021 CDS YP_001494646.1 157828404 5648238 525229..525366 1 NC_009882.1 hypothetical protein 525366 5648238 A1G_03005 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494646.1 525229 D 392021 CDS YP_001494647.1 157828405 5648239 525371..525985 1 NC_009882.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 525985 ruvA 5648239 ruvA Rickettsia rickettsii str. 'Sheila Smith' Holliday junction DNA helicase RuvA YP_001494647.1 525371 D 392021 CDS YP_001494648.1 157828406 5648240 526267..526467 1 NC_009882.1 hypothetical protein 526467 5648240 A1G_03015 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494648.1 526267 D 392021 CDS YP_001494649.1 157828407 5648241 526501..526902 1 NC_009882.1 hypothetical protein 526902 5648241 A1G_03020 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494649.1 526501 D 392021 CDS YP_001494650.1 157828408 5648242 526978..528006 1 NC_009882.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 528006 ruvB 5648242 ruvB Rickettsia rickettsii str. 'Sheila Smith' Holliday junction DNA helicase RuvB YP_001494650.1 526978 D 392021 CDS YP_001494651.1 157828409 5648243 527999..529762 1 NC_009882.1 COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug resistance protein 529762 5648243 A1G_03030 Rickettsia rickettsii str. 'Sheila Smith' multidrug resistance protein YP_001494651.1 527999 D 392021 CDS YP_001494652.1 157828410 5648244 529953..531197 1 NC_009882.1 COG0477 Permeases of the major facilitator superfamily; AmpG protein 531197 5648244 A1G_03035 Rickettsia rickettsii str. 'Sheila Smith' AmpG protein YP_001494652.1 529953 D 392021 CDS YP_001494653.1 157828411 5648662 531374..532294 1 NC_009882.1 COG1686 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein dacF 532294 5648662 A1G_03040 Rickettsia rickettsii str. 'Sheila Smith' penicillin-binding protein dacF YP_001494653.1 531374 D 392021 CDS YP_001494654.1 157828412 5648663 complement(532466..533428) 1 NC_009882.1 COG0797 Lipoproteins; rare lipoprotein A 533428 5648663 A1G_03045 Rickettsia rickettsii str. 'Sheila Smith' rare lipoprotein A YP_001494654.1 532466 R 392021 CDS YP_001494655.1 157828413 5648664 complement(533406..533894) 1 NC_009882.1 COG2823 Predicted periplasmic or secreted lipoprotein; hypothetical protein 533894 5648664 A1G_03050 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494655.1 533406 R 392021 CDS YP_001494656.1 157828414 5648665 533942..534049 1 NC_009882.1 intracellular septation protein A 534049 5648665 A1G_03055 Rickettsia rickettsii str. 'Sheila Smith' intracellular septation protein A YP_001494656.1 533942 D 392021 CDS YP_001494657.1 157828415 5648666 complement(534324..534866) 1 NC_009882.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 534866 5648666 A1G_03060 Rickettsia rickettsii str. 'Sheila Smith' intracellular septation protein A YP_001494657.1 534324 R 392021 CDS YP_001494658.1 157828416 5648667 complement(534896..535744) 1 NC_009882.1 COG0672 High-affinity Fe2+/Pb2+ permease; hypothetical protein 535744 5648667 A1G_03065 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494658.1 534896 R 392021 CDS YP_001494659.1 157828417 5648668 complement(535754..536134) 1 NC_009882.1 hypothetical protein 536134 5648668 A1G_03070 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494659.1 535754 R 392021 CDS YP_001494660.1 157828418 5648669 complement(536325..537320) 1 NC_009882.1 COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1; hypothetical protein 537320 5648669 A1G_03075 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494660.1 536325 R 392021 CDS YP_001494661.1 157828419 5648670 537459..538085 1 NC_009882.1 COG3485 Protocatechuate 3,4-dioxygenase beta subunit; hypothetical protein 538085 5648670 A1G_03080 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494661.1 537459 D 392021 CDS YP_001494662.1 157828420 5648671 538293..538937 1 NC_009882.1 COG0526 Thiol-disulfide isomerase and thioredoxins; thiol:disulfide interchange protein tlpA 538937 5648671 A1G_03085 Rickettsia rickettsii str. 'Sheila Smith' thiol:disulfide interchange protein tlpA YP_001494662.1 538293 D 392021 CDS YP_001494663.1 157828421 5648672 539102..540016 1 NC_009882.1 COG0616 Periplasmic serine proteases (ClpP class); protease sohB 540016 5648672 A1G_03090 Rickettsia rickettsii str. 'Sheila Smith' protease sohB YP_001494663.1 539102 D 392021 CDS YP_001494664.1 157828422 5647902 540018..540464 1 NC_009882.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 540464 dut 5647902 dut Rickettsia rickettsii str. 'Sheila Smith' deoxyuridine 5'-triphosphate nucleotidohydrolase YP_001494664.1 540018 D 392021 CDS YP_001494665.1 157828423 5647903 540681..542642 1 NC_009882.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); putative soluble lytic murein transglycosylase 542642 5647903 A1G_03100 Rickettsia rickettsii str. 'Sheila Smith' putative soluble lytic murein transglycosylase YP_001494665.1 540681 D 392021 CDS YP_001494666.1 157828424 5647904 542729..543688 1 NC_009882.1 hypothetical protein 543688 5647904 A1G_03105 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494666.1 542729 D 392021 CDS YP_001494667.1 157828425 5647905 543884..544831 1 NC_009882.1 COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF; microcin C7 self-immunity protein 544831 5647905 A1G_03110 Rickettsia rickettsii str. 'Sheila Smith' microcin C7 self-immunity protein YP_001494667.1 543884 D 392021 CDS YP_001494668.1 157828426 5647906 complement(545053..547569) 1 NC_009882.1 COG2887 RecB family exonuclease; hypothetical protein 547569 5647906 A1G_03115 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494668.1 545053 R 392021 CDS YP_001494669.1 157828427 5647907 547828..548109 1 NC_009882.1 hypothetical protein 548109 5647907 A1G_03120 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494669.1 547828 D 392021 CDS YP_001494670.1 157828428 5647908 complement(548113..548841) 1 NC_009882.1 COG2071 Predicted glutamine amidotransferases; hypothetical protein 548841 5647908 A1G_03125 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494670.1 548113 R 392021 CDS YP_001494671.1 157828429 5647909 complement(549048..550649) 1 NC_009882.1 COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; cytochrome c oxidase polypeptide I 550649 5647909 A1G_03130 Rickettsia rickettsii str. 'Sheila Smith' cytochrome c oxidase polypeptide I YP_001494671.1 549048 R 392021 CDS YP_001494672.1 157828430 5647910 complement(550655..551038) 1 NC_009882.1 COG0110 Acetyltransferase (isoleucine patch superfamily); hypothetical protein 551038 5647910 A1G_03135 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494672.1 550655 R 392021 CDS YP_001494673.1 157828431 5647911 complement(551231..552178) 1 NC_009882.1 COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2; cytochrome c oxidase polypeptide II 552178 5647911 A1G_03140 Rickettsia rickettsii str. 'Sheila Smith' cytochrome c oxidase polypeptide II YP_001494673.1 551231 R 392021 CDS YP_001494674.1 157828432 5647912 552989..554353 1 NC_009882.1 COG0739 Membrane proteins related to metalloendopeptidases; hypothetical protein 554353 5647912 A1G_03145 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494674.1 552989 D 392021 CDS YP_001494675.1 157828433 5648587 554615..555154 1 NC_009882.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 555154 lspA 5648587 lspA Rickettsia rickettsii str. 'Sheila Smith' lipoprotein signal peptidase YP_001494675.1 554615 D 392021 CDS YP_001494676.1 157828434 5648588 555321..555569 1 NC_009882.1 hypothetical protein 555569 5648588 A1G_03155 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494676.1 555321 D 392021 CDS YP_001494677.1 157828435 5648589 555741..557243 1 NC_009882.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 557243 murD 5648589 murD Rickettsia rickettsii str. 'Sheila Smith' UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_001494677.1 555741 D 392021 CDS YP_001494678.1 157828436 5648590 557375..558508 1 NC_009882.1 COG0772 Bacterial cell division membrane protein; cell division protein FtsW 558508 5648590 A1G_03165 Rickettsia rickettsii str. 'Sheila Smith' cell division protein FtsW YP_001494678.1 557375 D 392021 CDS YP_001494679.1 157828437 5648591 558505..559635 1 NC_009882.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 559635 murG 5648591 murG Rickettsia rickettsii str. 'Sheila Smith' undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_001494679.1 558505 D 392021 CDS YP_001494680.1 157828438 5648592 560030..560680 1 NC_009882.1 hypothetical protein 560680 5648592 A1G_03175 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494680.1 560030 D 392021 CDS YP_001494681.1 157828439 5648593 560838..560945 1 NC_009882.1 hypothetical protein 560945 5648593 A1G_03180 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494681.1 560838 D 392021 CDS YP_001494682.1 157828440 5648594 560974..561093 1 NC_009882.1 hypothetical protein 561093 5648594 A1G_03185 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494682.1 560974 D 392021 CDS YP_001494683.1 157828441 5648595 561090..561239 1 NC_009882.1 hypothetical protein 561239 5648595 A1G_03190 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494683.1 561090 D 392021 CDS YP_001494684.1 157828442 5648596 561253..561429 1 NC_009882.1 hypothetical protein 561429 5648596 A1G_03195 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494684.1 561253 D 392021 CDS YP_001494685.1 157828443 5648326 complement(561637..561858) 1 NC_009882.1 COG0841 Cation/multidrug efflux pump; hypothetical protein 561858 5648326 A1G_03200 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494685.1 561637 R 392021 CDS YP_001494686.1 157828444 5648327 complement(561855..562562) 1 NC_009882.1 COG0841 Cation/multidrug efflux pump; RND family efflux transporter 562562 5648327 A1G_03205 Rickettsia rickettsii str. 'Sheila Smith' RND family efflux transporter YP_001494686.1 561855 R 392021 CDS YP_001494687.1 157828445 5648328 complement(562569..563036) 1 NC_009882.1 COG0841 Cation/multidrug efflux pump; hypothetical protein 563036 5648328 A1G_03210 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494687.1 562569 R 392021 CDS YP_001494688.1 157828446 5648329 complement(563006..563632) 1 NC_009882.1 COG0841 Cation/multidrug efflux pump; RND family efflux transporter 563632 5648329 A1G_03215 Rickettsia rickettsii str. 'Sheila Smith' RND family efflux transporter YP_001494688.1 563006 R 392021 CDS YP_001494689.1 157828447 5648330 complement(563830..564159) 1 NC_009882.1 COG0841 Cation/multidrug efflux pump; hypothetical protein 564159 5648330 A1G_03220 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494689.1 563830 R 392021 CDS YP_001494690.1 157828448 5648331 complement(565725..565901) 1 NC_009882.1 hypothetical protein 565901 5648331 A1G_03235 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494690.1 565725 R 392021 CDS YP_001494691.1 157828449 5648332 complement(567279..568298) 1 NC_009882.1 COG0438 Glycosyltransferase; capM protein 568298 5648332 A1G_03250 Rickettsia rickettsii str. 'Sheila Smith' capM protein YP_001494691.1 567279 R 392021 CDS YP_001494692.1 157828450 5648333 complement(568302..568589) 1 NC_009882.1 hypothetical protein 568589 5648333 A1G_03255 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494692.1 568302 R 392021 CDS YP_001494693.1 157828451 5648334 569277..570089 1 NC_009882.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 570089 dapF 5648334 dapF Rickettsia rickettsii str. 'Sheila Smith' diaminopimelate epimerase YP_001494693.1 569277 D 392021 CDS YP_001494694.1 157828452 5648335 570064..571329 1 NC_009882.1 COG0621 2-methylthioadenine synthetase; hypothetical protein 571329 5648335 A1G_03275 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494694.1 570064 D 392021 CDS YP_001494695.1 157828453 5648336 571571..572620 1 NC_009882.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 572620 pheS 5648336 pheS Rickettsia rickettsii str. 'Sheila Smith' phenylalanyl-tRNA synthetase subunit alpha YP_001494695.1 571571 D 392021 CDS YP_001494696.1 157828454 5648684 572617..575073 1 NC_009882.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 575073 pheT 5648684 pheT Rickettsia rickettsii str. 'Sheila Smith' phenylalanyl-tRNA synthetase subunit beta YP_001494696.1 572617 D 392021 CDS YP_001494697.1 157828455 5648685 575078..576217 1 NC_009882.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 576217 5648685 A1G_03290 Rickettsia rickettsii str. 'Sheila Smith' DNA polymerase III subunit beta YP_001494697.1 575078 D 392021 CDS YP_001494698.1 157828456 5648686 576573..577076 1 NC_009882.1 hypothetical protein 577076 5648686 A1G_03295 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494698.1 576573 D 392021 CDS YP_001494699.1 157828457 5648687 577205..579712 1 NC_009882.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 579712 leuS 5648687 leuS Rickettsia rickettsii str. 'Sheila Smith' leucyl-tRNA synthetase YP_001494699.1 577205 D 392021 CDS YP_001494700.1 157828458 5648688 complement(580231..580386) 1 NC_009882.1 hypothetical protein 580386 5648688 A1G_03305 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494700.1 580231 R 392021 CDS YP_001494701.1 157828459 5648689 complement(580790..581401) 1 NC_009882.1 COG0349 Ribonuclease D; ribonuclease D 581401 5648689 A1G_03310 Rickettsia rickettsii str. 'Sheila Smith' ribonuclease D YP_001494701.1 580790 R 392021 CDS YP_001494702.1 157828460 5648690 complement(581550..581855) 1 NC_009882.1 COG2919 Septum formation initiator; hypothetical protein 581855 5648690 A1G_03315 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494702.1 581550 R 392021 CDS YP_001494703.1 157828461 5648691 complement(581852..582544) 1 NC_009882.1 COG0575 CDP-diglyceride synthetase; phosphatidate cytidylyltransferase 582544 5648691 A1G_03320 Rickettsia rickettsii str. 'Sheila Smith' phosphatidate cytidylyltransferase YP_001494703.1 581852 R 392021 CDS YP_001494704.1 157828462 5648692 complement(582504..583184) 1 NC_009882.1 COG0020 Undecaprenyl pyrophosphate synthase; undecaprenyl pyrophosphate synthetase 583184 5648692 A1G_03325 Rickettsia rickettsii str. 'Sheila Smith' undecaprenyl pyrophosphate synthetase YP_001494704.1 582504 R 392021 CDS YP_001494705.1 157828463 5648693 complement(583357..584787) 1 NC_009882.1 COG0642 Signal transduction histidine kinase; osmolarity sensor protein envZ 584787 5648693 A1G_03330 Rickettsia rickettsii str. 'Sheila Smith' osmolarity sensor protein envZ YP_001494705.1 583357 R 392021 CDS YP_001494706.1 157828464 5648694 complement(584771..585451) 1 NC_009882.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; petR protein 585451 5648694 A1G_03335 Rickettsia rickettsii str. 'Sheila Smith' petR protein YP_001494706.1 584771 R 392021 CDS YP_001494707.1 157828465 5648525 585663..586535 1 NC_009882.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 586535 5648525 A1G_03340 Rickettsia rickettsii str. 'Sheila Smith' branched-chain amino acid aminotransferase YP_001494707.1 585663 D 392021 CDS YP_001494708.1 157828466 5648526 586721..587605 1 NC_009882.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 587605 5648526 A1G_03345 Rickettsia rickettsii str. 'Sheila Smith' dihydrodipicolinate synthase YP_001494708.1 586721 D 392021 CDS YP_001494709.1 157828467 5648527 587602..588060 1 NC_009882.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 588060 smpB 5648527 smpB Rickettsia rickettsii str. 'Sheila Smith' SsrA-binding protein YP_001494709.1 587602 D 392021 CDS YP_001494710.1 157828468 5648528 588192..588983 1 NC_009882.1 COG1651 Protein-disulfide isomerase; hypothetical protein 588983 5648528 A1G_03355 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494710.1 588192 D 392021 CDS YP_001494711.1 157828469 5648529 complement(589216..590094) 1 NC_009882.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 590094 5648529 A1G_03360 Rickettsia rickettsii str. 'Sheila Smith' succinyl-CoA synthetase subunit alpha YP_001494711.1 589216 R 392021 CDS YP_001494712.1 157828470 5648530 complement(590268..591428) 1 NC_009882.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 591428 sucC 5648530 sucC Rickettsia rickettsii str. 'Sheila Smith' succinyl-CoA synthetase subunit beta YP_001494712.1 590268 R 392021 CDS YP_001494713.1 157828471 5648531 complement(591460..591555) 1 NC_009882.1 hypothetical protein 591555 5648531 A1G_03370 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494713.1 591460 R 392021 CDS YP_001494714.1 157828472 5648532 complement(591552..591845) 1 NC_009882.1 COG5611 Predicted nucleic-acid-binding protein, contains PIN domain; hypothetical protein 591845 5648532 A1G_03375 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494714.1 591552 R 392021 CDS YP_001494715.1 157828473 5648533 complement(591832..592086) 1 NC_009882.1 COG2002 Regulators of stationary/sporulation gene expression; transcriptional regulator 592086 5648533 A1G_03380 Rickettsia rickettsii str. 'Sheila Smith' transcriptional regulator YP_001494715.1 591832 R 392021 CDS YP_001494716.1 157828474 5648534 complement(592245..592403) 1 NC_009882.1 cytochrome b561 family protein 592403 5648534 A1G_03385 Rickettsia rickettsii str. 'Sheila Smith' cytochrome b561 family protein YP_001494716.1 592245 R 392021 CDS YP_001494717.1 157828475 5647768 complement(592448..592699) 1 NC_009882.1 hypothetical protein 592699 5647768 A1G_03390 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494717.1 592448 R 392021 CDS YP_001494718.1 157828476 5647769 complement(592866..594896) 1 NC_009882.1 COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; acylamino-acid-releasing enzyme 594896 5647769 A1G_03395 Rickettsia rickettsii str. 'Sheila Smith' acylamino-acid-releasing enzyme YP_001494718.1 592866 R 392021 CDS YP_001494719.1 157828477 5647770 complement(594984..595619) 1 NC_009882.1 COG4395 Uncharacterized protein conserved in bacteria; hypothetical protein 595619 5647770 A1G_03400 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494719.1 594984 R 392021 CDS YP_001494720.1 157828478 5647771 complement(595943..596455) 1 NC_009882.1 COG1835 Predicted acyltransferases; hypothetical protein 596455 5647771 A1G_03405 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494720.1 595943 R 392021 CDS YP_001494721.1 157828479 5647772 complement(596644..596871) 1 NC_009882.1 COG1835 Predicted acyltransferases; hypothetical protein 596871 5647772 A1G_03410 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494721.1 596644 R 392021 CDS YP_001494722.1 157828480 5647773 complement(597048..597410) 1 NC_009882.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 597410 rbfA 5647773 rbfA Rickettsia rickettsii str. 'Sheila Smith' ribosome-binding factor A YP_001494722.1 597048 R 392021 CDS YP_001494723.1 157828481 5647774 complement(597407..597841) 1 NC_009882.1 COG1238 Predicted membrane protein; hypothetical protein 597841 5647774 A1G_03420 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494723.1 597407 R 392021 CDS YP_001494724.1 157828482 5647775 597984..598505 1 NC_009882.1 COG1714 Predicted membrane protein/domain; hypothetical protein 598505 5647775 A1G_03425 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494724.1 597984 D 392021 CDS YP_001494725.1 157828483 5647776 598653..599258 1 NC_009882.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 599258 recR 5647776 recR Rickettsia rickettsii str. 'Sheila Smith' recombination protein RecR YP_001494725.1 598653 D 392021 CDS YP_001494726.1 157828484 5647777 complement(599373..599573) 1 NC_009882.1 hypothetical protein 599573 5647777 A1G_03435 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494726.1 599373 R 392021 CDS YP_001494727.1 157828485 5647778 complement(599897..600067) 1 NC_009882.1 hypothetical protein 600067 5647778 A1G_03440 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494727.1 599897 R 392021 CDS YP_001494728.1 157828486 5647779 600281..600448 1 NC_009882.1 hypothetical protein 600448 5647779 A1G_03445 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494728.1 600281 D 392021 CDS YP_001494729.1 157828487 5647780 complement(600452..600565) 1 NC_009882.1 hypothetical protein 600565 5647780 A1G_03450 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494729.1 600452 R 392021 CDS YP_001494730.1 157828488 5647781 complement(600709..600942) 1 NC_009882.1 hypothetical protein 600942 5647781 A1G_03455 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494730.1 600709 R 392021 CDS YP_001494731.1 157828489 5647782 complement(601122..601889) 1 NC_009882.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 601889 ppnK 5647782 ppnK Rickettsia rickettsii str. 'Sheila Smith' inorganic polyphosphate/ATP-NAD kinase YP_001494731.1 601122 R 392021 CDS YP_001494732.1 157828490 5647783 601976..603658 1 NC_009882.1 COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily; hypothetical protein 603658 5647783 A1G_03465 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494732.1 601976 D 392021 CDS YP_001494733.1 157828491 5647784 603906..604922 1 NC_009882.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 604922 gpsA 5647784 gpsA Rickettsia rickettsii str. 'Sheila Smith' NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_001494733.1 603906 D 392021 CDS YP_001494734.1 157828492 5647785 605108..606037 1 NC_009882.1 COG0679 Predicted permeases; permease 606037 5647785 A1G_03475 Rickettsia rickettsii str. 'Sheila Smith' permease YP_001494734.1 605108 D 392021 CDS YP_001494735.1 157828493 5647786 606106..606978 1 NC_009882.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); hypothetical protein 606978 5647786 A1G_03480 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494735.1 606106 D 392021 CDS YP_001494736.1 157828494 5647787 607180..608112 1 NC_009882.1 COG0492 Thioredoxin reductase; thioredoxin reductase 608112 5647787 A1G_03485 Rickettsia rickettsii str. 'Sheila Smith' thioredoxin reductase YP_001494736.1 607180 D 392021 CDS YP_001494737.1 157828495 5647788 608404..609831 1 NC_009882.1 COG1012 NAD-dependent aldehyde dehydrogenases; succinate semialdehyde dehydrogenase 609831 5647788 A1G_03490 Rickettsia rickettsii str. 'Sheila Smith' succinate semialdehyde dehydrogenase YP_001494737.1 608404 D 392021 CDS YP_001494738.1 157828496 5647789 609991..610131 1 NC_009882.1 hypothetical protein 610131 5647789 A1G_03495 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494738.1 609991 D 392021 CDS YP_001494739.1 157828497 5648750 610155..610331 1 NC_009882.1 hypothetical protein 610331 5648750 A1G_03500 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494739.1 610155 D 392021 CDS YP_001494740.1 157828498 5648751 610324..611169 1 NC_009882.1 COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyl transferase family protein 611169 5648751 A1G_03505 Rickettsia rickettsii str. 'Sheila Smith' glycosyl transferase family protein YP_001494740.1 610324 D 392021 CDS YP_001494741.1 157828499 5648752 611244..613205 1 NC_009882.1 COG0210 Superfamily I DNA and RNA helicases; DNA helicase II 613205 5648752 A1G_03510 Rickettsia rickettsii str. 'Sheila Smith' DNA helicase II YP_001494741.1 611244 D 392021 CDS YP_001494742.1 157828500 5648753 613271..613630 1 NC_009882.1 hypothetical protein 613630 5648753 A1G_03515 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494742.1 613271 D 392021 CDS YP_001494743.1 157828501 5648754 613696..613875 1 NC_009882.1 hypothetical protein 613875 5648754 A1G_03520 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494743.1 613696 D 392021 CDS YP_001494744.1 157828502 5648755 613879..614184 1 NC_009882.1 hypothetical protein 614184 5648755 A1G_03525 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494744.1 613879 D 392021 CDS YP_001494745.1 157828503 5648756 614235..615587 1 NC_009882.1 hypothetical protein 615587 5648756 A1G_03530 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494745.1 614235 D 392021 CDS YP_001494746.1 157828504 5648757 complement(615764..616795) 1 NC_009882.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 616795 5648757 A1G_03535 Rickettsia rickettsii str. 'Sheila Smith' threonine dehydratase YP_001494746.1 615764 R 392021 CDS YP_001494747.1 157828505 5648758 616905..619217 1 NC_009882.1 COG0466 ATP-dependent Lon protease, bacterial type; ATP-dependent protease La 619217 5648758 A1G_03540 Rickettsia rickettsii str. 'Sheila Smith' ATP-dependent protease La YP_001494747.1 616905 D 392021 CDS YP_001494748.1 157828506 5648759 complement(620698..620901) 1 NC_009882.1 hypothetical protein 620901 5648759 A1G_03555 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494748.1 620698 R 392021 CDS YP_001494749.1 157828507 5647524 complement(620908..621090) 1 NC_009882.1 hypothetical protein 621090 5647524 A1G_03560 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494749.1 620908 R 392021 CDS YP_001494750.1 157828508 5647525 complement(621737..621997) 1 NC_009882.1 hypothetical protein 621997 5647525 A1G_03570 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494750.1 621737 R 392021 CDS YP_001494751.1 157828509 5647527 complement(622324..622410) 1 NC_009882.1 hypothetical protein 622410 5647527 A1G_03575 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494751.1 622324 R 392021 CDS YP_001494752.1 157828510 5647528 622741..623049 1 NC_009882.1 hypothetical protein 623049 5647528 A1G_03580 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494752.1 622741 D 392021 CDS YP_001494753.1 157828511 5647529 623166..623744 1 NC_009882.1 COG1544 Ribosome-associated protein Y (PSrp-1); sigma(54) modulation protein 623744 5647529 A1G_03585 Rickettsia rickettsii str. 'Sheila Smith' sigma(54) modulation protein YP_001494753.1 623166 D 392021 CDS YP_001494754.1 157828512 5647530 complement(624291..625157) 1 NC_009882.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 625157 5647530 A1G_03600 Rickettsia rickettsii str. 'Sheila Smith' bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_001494754.1 624291 R 392021 CDS YP_001494755.1 157828513 5647531 complement(625294..626316) 1 NC_009882.1 COG0492 Thioredoxin reductase; thioredoxin reductase 626316 5647531 A1G_03605 Rickettsia rickettsii str. 'Sheila Smith' thioredoxin reductase YP_001494755.1 625294 R 392021 CDS YP_001494756.1 157828514 5647532 627516..627755 1 NC_009882.1 COG3121 P pilus assembly protein, chaperone PapD; hypothetical protein 627755 5647532 A1G_03620 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494756.1 627516 D 392021 CDS YP_001494757.1 157828515 5647533 627940..628293 1 NC_009882.1 COG0045 Succinyl-CoA synthetase, beta subunit; hypothetical protein 628293 5647533 A1G_03625 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494757.1 627940 D 392021 CDS YP_001494758.1 157828516 5648695 628290..628421 1 NC_009882.1 P pilus assembly protein FimD 628421 5648695 A1G_03630 Rickettsia rickettsii str. 'Sheila Smith' P pilus assembly protein FimD YP_001494758.1 628290 D 392021 CDS YP_001494759.1 157828517 5648696 628414..628848 1 NC_009882.1 COG3188 P pilus assembly protein, porin PapC; hypothetical protein 628848 5648696 A1G_03635 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494759.1 628414 D 392021 CDS YP_001494760.1 157828518 5648697 630368..630772 1 NC_009882.1 COG5430 Uncharacterized secreted protein; hypothetical protein 630772 5648697 A1G_03655 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494760.1 630368 D 392021 CDS YP_001494761.1 157828519 5648698 631003..631320 1 NC_009882.1 chitin binding domain-containing protein 631320 5648698 A1G_03660 Rickettsia rickettsii str. 'Sheila Smith' chitin binding domain-containing protein YP_001494761.1 631003 D 392021 CDS YP_001494762.1 157828520 5648699 631379..631483 1 NC_009882.1 chitin binding domain-containing protein 631483 5648699 A1G_03665 Rickettsia rickettsii str. 'Sheila Smith' chitin binding domain-containing protein YP_001494762.1 631379 D 392021 CDS YP_001494763.1 157828521 5648700 632043..633866 1 NC_009882.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 633866 5648700 A1G_03670 Rickettsia rickettsii str. 'Sheila Smith' ribonucleotide-diphosphate reductase subunit alpha YP_001494763.1 632043 D 392021 CDS YP_001494764.1 157828522 5648701 634212..634331 1 NC_009882.1 hypothetical protein 634331 5648701 A1G_03675 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494764.1 634212 D 392021 CDS YP_001494765.1 157828523 5648702 634523..634840 1 NC_009882.1 hypothetical protein 634840 5648702 A1G_03680 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494765.1 634523 D 392021 CDS YP_001494766.1 157828524 5648703 634696..635682 1 NC_009882.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 635682 nrdF 5648703 nrdF Rickettsia rickettsii str. 'Sheila Smith' ribonucleotide-diphosphate reductase subunit beta YP_001494766.1 634696 D 392021 CDS YP_001494767.1 157828525 5648704 639443..639595 1 NC_009882.1 hypothetical protein 639595 5648704 A1G_03700 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494767.1 639443 D 392021 CDS YP_001494769.1 157828527 5647811 639777..639896 1 NC_009882.1 hypothetical protein 639896 5647811 A1G_03710 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494769.1 639777 D 392021 CDS YP_001494770.1 157828528 5647812 complement(640774..641865) 1 NC_009882.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 641865 miaA 5647812 miaA Rickettsia rickettsii str. 'Sheila Smith' tRNA delta(2)-isopentenylpyrophosphate transferase YP_001494770.1 640774 R 392021 CDS YP_001494771.1 157828529 5647813 complement(642001..642327) 1 NC_009882.1 hypothetical protein 642327 5647813 A1G_03730 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494771.1 642001 R 392021 CDS YP_001494772.1 157828530 5647814 complement(642398..643786) 1 NC_009882.1 COG1109 Phosphomannomutase; phosphomannomutase 643786 5647814 A1G_03735 Rickettsia rickettsii str. 'Sheila Smith' phosphomannomutase YP_001494772.1 642398 R 392021 CDS YP_001494773.1 157828531 5647815 643812..643967 1 NC_009882.1 hypothetical protein 643967 5647815 A1G_03740 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494773.1 643812 D 392021 CDS YP_001494774.1 157828532 5647816 complement(643957..644679) 1 NC_009882.1 COG1137 ABC-type (unclassified) transport system, ATPase component; ABC transporter ATP-binding protein 644679 5647816 A1G_03745 Rickettsia rickettsii str. 'Sheila Smith' ABC transporter ATP-binding protein YP_001494774.1 643957 R 392021 CDS YP_001494775.1 157828533 5647817 complement(644862..645278) 1 NC_009882.1 COG1934 Uncharacterized protein conserved in bacteria; hypothetical protein 645278 5647817 A1G_03750 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494775.1 644862 R 392021 CDS YP_001494776.1 157828534 5647818 complement(645417..646013) 1 NC_009882.1 COG5375 Uncharacterized protein conserved in bacteria; hypothetical protein 646013 5647818 A1G_03755 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494776.1 645417 R 392021 CDS YP_001494777.1 157828535 5647819 complement(646019..646978) 1 NC_009882.1 COG0794 Predicted sugar phosphate isomerase involved in capsule formation; kpsF protein 646978 5647819 A1G_03760 Rickettsia rickettsii str. 'Sheila Smith' kpsF protein YP_001494777.1 646019 R 392021 CDS YP_001494778.1 157828536 5647820 complement(646983..647159) 1 NC_009882.1 hypothetical protein 647159 5647820 A1G_03765 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494778.1 646983 R 392021 CDS YP_001494779.1 157828537 5647821 complement(647178..649424) 1 NC_009882.1 COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); polynucleotide phosphorylase/polyadenylase 649424 5647821 A1G_03770 Rickettsia rickettsii str. 'Sheila Smith' polynucleotide phosphorylase/polyadenylase YP_001494779.1 647178 R 392021 CDS YP_001494780.1 157828538 5647685 complement(649572..649847) 1 NC_009882.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 649847 rpsO 5647685 rpsO Rickettsia rickettsii str. 'Sheila Smith' 30S ribosomal protein S15 YP_001494780.1 649572 R 392021 CDS YP_001494781.1 157828539 5647686 complement(649883..650920) 1 NC_009882.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; proteins in this cluster have Rickettsial repeat elements (RPE) inserts; tRNA pseudouridine synthase B 650920 truB 5647686 truB Rickettsia rickettsii str. 'Sheila Smith' tRNA pseudouridine synthase B YP_001494781.1 649883 R 392021 CDS YP_001494782.1 157828540 5647687 651005..652540 1 NC_009882.1 COG3202 ATP/ADP translocase; ADP,ATP carrier protein 652540 5647687 A1G_03785 Rickettsia rickettsii str. 'Sheila Smith' ADP,ATP carrier protein YP_001494782.1 651005 D 392021 CDS YP_001494783.1 157828541 5647688 652833..655895 1 NC_009882.1 COG0460 Homoserine dehydrogenase; cell surface antigen 655895 5647688 A1G_03790 Rickettsia rickettsii str. 'Sheila Smith' cell surface antigen YP_001494783.1 652833 D 392021 CDS YP_001494784.1 157828542 5647689 complement(656014..656391) 1 NC_009882.1 COG1396 Predicted transcriptional regulators; hypothetical protein 656391 5647689 A1G_03795 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494784.1 656014 R 392021 CDS YP_001494785.1 157828543 5647690 656909..657736 1 NC_009882.1 COG1295 Predicted membrane protein; hypothetical protein 657736 5647690 A1G_03800 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494785.1 656909 D 392021 CDS YP_001494786.1 157828544 5647691 complement(657886..658719) 1 NC_009882.1 COG0174 Glutamine synthetase; hypothetical protein 658719 5647691 A1G_03805 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494786.1 657886 R 392021 CDS YP_001494787.1 157828545 5647692 658718..659440 1 NC_009882.1 COG1496 Uncharacterized conserved protein; hypothetical protein 659440 5647692 A1G_03810 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494787.1 658718 D 392021 CDS YP_001494788.1 157828546 5647693 659733..660017 1 NC_009882.1 COG0242 N-formylmethionyl-tRNA deformylase; polypeptide deformylase 660017 5647693 A1G_03815 Rickettsia rickettsii str. 'Sheila Smith' polypeptide deformylase YP_001494788.1 659733 D 392021 CDS YP_001494789.1 157828547 5647694 660375..660689 1 NC_009882.1 hypothetical protein 660689 5647694 A1G_03820 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494789.1 660375 D 392021 CDS YP_001494790.1 157828548 5647695 complement(660779..661474) 1 NC_009882.1 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; hypothetical protein 661474 5647695 A1G_03825 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494790.1 660779 R 392021 CDS YP_001494791.1 157828549 5648213 complement(661710..663389) 1 NC_009882.1 hypothetical protein 663389 5648213 A1G_03830 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494791.1 661710 R 392021 CDS YP_001494792.1 157828550 5648214 663418..663543 1 NC_009882.1 pyruvate phosphate dikinase 663543 5648214 A1G_03835 Rickettsia rickettsii str. 'Sheila Smith' pyruvate phosphate dikinase YP_001494792.1 663418 D 392021 CDS YP_001494793.1 157828551 5648215 complement(663781..666417) 1 NC_009882.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 666417 5648215 A1G_03840 Rickettsia rickettsii str. 'Sheila Smith' pyruvate phosphate dikinase YP_001494793.1 663781 R 392021 CDS YP_001494794.1 157828552 5648216 667347..668015 1 NC_009882.1 COG0625 Glutathione S-transferase; hypothetical protein 668015 5648216 A1G_03845 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494794.1 667347 D 392021 CDS YP_001494795.1 157828553 5648217 complement(668127..668879) 1 NC_009882.1 COG4285 Uncharacterized conserved protein; hypothetical protein 668879 5648217 A1G_03850 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494795.1 668127 R 392021 CDS YP_001494796.1 157828554 5648218 complement(668912..669154) 1 NC_009882.1 hypothetical protein 669154 5648218 A1G_03855 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494796.1 668912 R 392021 CDS YP_001494797.1 157828555 5648219 669180..669497 1 NC_009882.1 COG1268 Uncharacterized conserved protein; hypothetical protein 669497 5648219 A1G_03860 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494797.1 669180 D 392021 CDS YP_001494798.1 157828556 5648220 669695..670993 1 NC_009882.1 COG0285 Folylpolyglutamate synthase; folylpolyglutamate synthase 670993 5648220 A1G_03865 Rickettsia rickettsii str. 'Sheila Smith' folylpolyglutamate synthase YP_001494798.1 669695 D 392021 CDS YP_001494799.1 157828557 5648221 671166..671795 1 NC_009882.1 COG0605 Superoxide dismutase; superoxide dismutase 671795 5648221 A1G_03870 Rickettsia rickettsii str. 'Sheila Smith' superoxide dismutase YP_001494799.1 671166 D 392021 CDS YP_001494800.1 157828558 5648222 671800..671961 1 NC_009882.1 hypothetical protein 671961 5648222 A1G_03875 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494800.1 671800 D 392021 CDS YP_001494801.1 157828559 5648223 673705..674505 1 NC_009882.1 COG0340 Biotin-(acetyl-CoA carboxylase) ligase; biotin--protein ligase 674505 5648223 A1G_03895 Rickettsia rickettsii str. 'Sheila Smith' biotin--protein ligase YP_001494801.1 673705 D 392021 CDS YP_001494802.1 157828560 5647578 674573..674761 1 NC_009882.1 hypothetical protein 674761 5647578 A1G_03900 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494802.1 674573 D 392021 CDS YP_001494803.1 157828561 5647579 674979..675467 1 NC_009882.1 COG5448 Uncharacterized conserved protein; hypothetical protein 675467 5647579 A1G_03905 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494803.1 674979 D 392021 CDS YP_001494804.1 157828562 5647580 675464..675733 1 NC_009882.1 hypothetical protein 675733 5647580 A1G_03910 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494804.1 675464 D 392021 CDS YP_001494805.1 157828563 5647581 675762..675932 1 NC_009882.1 COG5449 Uncharacterized conserved protein; hypothetical protein 675932 5647581 A1G_03915 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494805.1 675762 D 392021 CDS YP_001494806.1 157828564 5647582 675936..676109 1 NC_009882.1 hypothetical protein 676109 5647582 A1G_03920 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494806.1 675936 D 392021 CDS YP_001494807.1 157828565 5647583 676096..676425 1 NC_009882.1 COG5346 Predicted membrane protein; hypothetical protein 676425 5647583 A1G_03925 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494807.1 676096 D 392021 CDS YP_001494808.1 157828566 5647584 676576..677049 1 NC_009882.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 677049 infC 5647584 infC Rickettsia rickettsii str. 'Sheila Smith' translation initiation factor IF-3 YP_001494808.1 676576 D 392021 CDS YP_001494809.1 157828567 5647585 677195..678433 1 NC_009882.1 COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes; branched-chain alpha-keto acid dehydrogenase subunit E2 678433 5647585 A1G_03935 Rickettsia rickettsii str. 'Sheila Smith' branched-chain alpha-keto acid dehydrogenase subunit E2 YP_001494809.1 677195 D 392021 CDS YP_001494810.1 157828568 5647586 678566..679633 1 NC_009882.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 679633 prfA 5647586 prfA Rickettsia rickettsii str. 'Sheila Smith' peptide chain release factor 1 YP_001494810.1 678566 D 392021 CDS YP_001494811.1 157828569 5647587 679794..681557 1 NC_009882.1 COG0608 Single-stranded DNA-specific exonuclease; single-stranded-DNA-specific exonuclease RecJ 681557 5647587 A1G_03945 Rickettsia rickettsii str. 'Sheila Smith' single-stranded-DNA-specific exonuclease RecJ YP_001494811.1 679794 D 392021 CDS YP_001494812.1 157828570 5647588 681601..682923 1 NC_009882.1 COG0500 SAM-dependent methyltransferases; hypothetical protein 682923 5647588 A1G_03950 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494812.1 681601 D 392021 CDS YP_001494813.1 157828571 5648566 683305..684681 1 NC_009882.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 684681 rho 5648566 rho Rickettsia rickettsii str. 'Sheila Smith' transcription termination factor Rho YP_001494813.1 683305 D 392021 CDS YP_001494814.1 157828572 5648567 684807..685721 1 NC_009882.1 COG0616 Periplasmic serine proteases (ClpP class); protease IV 685721 5648567 A1G_03960 Rickettsia rickettsii str. 'Sheila Smith' protease IV YP_001494814.1 684807 D 392021 CDS YP_001494815.1 157828573 5648568 685724..685966 1 NC_009882.1 COG0776 Bacterial nucleoid DNA-binding protein; integration host factor beta-subunit 685966 5648568 A1G_03965 Rickettsia rickettsii str. 'Sheila Smith' integration host factor beta-subunit YP_001494815.1 685724 D 392021 CDS YP_001494816.1 157828574 5648569 685973..686173 1 NC_009882.1 hypothetical protein 686173 5648569 A1G_03970 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494816.1 685973 D 392021 CDS YP_001494817.1 157828575 5648570 686241..686363 1 NC_009882.1 hypothetical protein 686363 5648570 A1G_03975 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494817.1 686241 D 392021 CDS YP_001494818.1 157828576 5648571 686536..686727 1 NC_009882.1 hypothetical protein 686727 5648571 A1G_03980 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494818.1 686536 D 392021 CDS YP_001494819.1 157828577 5648572 686730..687476 1 NC_009882.1 COG3022 Uncharacterized protein conserved in bacteria; hypothetical protein 687476 5648572 A1G_03985 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494819.1 686730 D 392021 CDS YP_001494820.1 157828578 5648573 complement(687560..687772) 1 NC_009882.1 hypothetical protein 687772 5648573 A1G_03990 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494820.1 687560 R 392021 CDS YP_001494821.1 157828579 5648574 complement(687753..688088) 1 NC_009882.1 hypothetical protein 688088 5648574 A1G_03995 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494821.1 687753 R 392021 CDS YP_001494822.1 157828580 5648575 complement(688131..688310) 1 NC_009882.1 hypothetical protein 688310 5648575 A1G_04000 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494822.1 688131 R 392021 CDS YP_001494823.1 157828581 5648576 complement(688252..688386) 1 NC_009882.1 hypothetical protein 688386 5648576 A1G_04005 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494823.1 688252 R 392021 CDS YP_001494824.1 157828582 5648285 688364..688612 1 NC_009882.1 COG1373 Predicted ATPase (AAA+ superfamily); hypothetical protein 688612 5648285 A1G_04010 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494824.1 688364 D 392021 CDS YP_001494825.1 157828583 5648286 688815..689138 1 NC_009882.1 hypothetical protein 689138 5648286 A1G_04015 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494825.1 688815 D 392021 CDS YP_001494826.1 157828584 5648288 complement(689290..690282) 1 NC_009882.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 690282 5648288 A1G_04020 Rickettsia rickettsii str. 'Sheila Smith' tryptophanyl-tRNA synthetase YP_001494826.1 689290 R 392021 CDS YP_001494827.1 157828585 5648289 690510..691085 1 NC_009882.1 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 691085 5648289 A1G_04025 Rickettsia rickettsii str. 'Sheila Smith' 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_001494827.1 690510 D 392021 CDS YP_001494828.1 157828586 5648290 691150..691590 1 NC_009882.1 COG5622 Protein required for attachment to host cells; hypothetical protein 691590 5648290 A1G_04030 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494828.1 691150 D 392021 CDS YP_001494829.1 157828587 5648291 complement(691797..691928) 1 NC_009882.1 hypothetical protein 691928 5648291 A1G_04035 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494829.1 691797 R 392021 CDS YP_001494830.1 157828588 5648292 692307..693026 1 NC_009882.1 COG2945 Predicted hydrolase of the alpha/beta superfamily; hypothetical protein 693026 5648292 A1G_04040 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494830.1 692307 D 392021 CDS YP_001494831.1 157828589 5648293 complement(693256..694260) 1 NC_009882.1 COG2956 Predicted N-acetylglucosaminyl transferase; hypothetical protein 694260 5648293 A1G_04045 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494831.1 693256 R 392021 CDS YP_001494832.1 157828590 5648294 complement(694253..695008) 1 NC_009882.1 hypothetical protein 695008 5648294 A1G_04050 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494832.1 694253 R 392021 CDS YP_001494833.1 157828591 5648130 complement(694992..695666) 1 NC_009882.1 hypothetical protein 695666 5648130 A1G_04055 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494833.1 694992 R 392021 CDS YP_001494834.1 157828592 5648131 complement(695644..696285) 1 NC_009882.1 COG1279 Lysine efflux permease; hypothetical protein 696285 5648131 A1G_04060 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494834.1 695644 R 392021 CDS YP_001494835.1 157828593 5648132 complement(696286..696408) 1 NC_009882.1 hypothetical protein 696408 5648132 A1G_04065 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494835.1 696286 R 392021 CDS YP_001494836.1 157828594 5648133 complement(696873..698126) 1 NC_009882.1 COG0477 Permeases of the major facilitator superfamily; AmpG protein 698126 5648133 A1G_04070 Rickettsia rickettsii str. 'Sheila Smith' AmpG protein YP_001494836.1 696873 R 392021 CDS YP_001494837.1 157828595 5648134 complement(698370..698615) 1 NC_009882.1 transposase 698615 5648134 A1G_04075 Rickettsia rickettsii str. 'Sheila Smith' transposase YP_001494837.1 698370 R 392021 CDS YP_001494838.1 157828596 5648135 complement(698612..698749) 1 NC_009882.1 transposase 698749 5648135 A1G_04080 Rickettsia rickettsii str. 'Sheila Smith' transposase YP_001494838.1 698612 R 392021 CDS YP_001494839.1 157828597 5648136 698884..699036 1 NC_009882.1 lipopolysaccharide 1,2-glucosyltransferase RfaJ 699036 5648136 A1G_04085 Rickettsia rickettsii str. 'Sheila Smith' lipopolysaccharide 1,2-glucosyltransferase RfaJ YP_001494839.1 698884 D 392021 CDS YP_001494840.1 157828598 5648137 699319..700824 1 NC_009882.1 COG3202 ATP/ADP translocase; ADP,ATP carrier protein 700824 5648137 A1G_04090 Rickettsia rickettsii str. 'Sheila Smith' ADP,ATP carrier protein YP_001494840.1 699319 D 392021 CDS YP_001494841.1 157828599 5648138 701074..702654 1 NC_009882.1 hypothetical protein 702654 5648138 A1G_04095 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494841.1 701074 D 392021 CDS YP_001494842.1 157828600 5648139 702641..703708 1 NC_009882.1 COG0142 Geranylgeranyl pyrophosphate synthase; octaprenyl-diphosphate synthase 703708 5648139 A1G_04100 Rickettsia rickettsii str. 'Sheila Smith' octaprenyl-diphosphate synthase YP_001494842.1 702641 D 392021 CDS YP_001494843.1 157828601 5648434 complement(704112..705950) 1 NC_009882.1 COG0006 Xaa-Pro aminopeptidase; hypothetical protein 705950 5648434 A1G_04105 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494843.1 704112 R 392021 CDS YP_001494844.1 157828602 5648435 complement(706092..707375) 1 NC_009882.1 COG0531 Amino acid transporters; putrescine-ornithine antiporter 707375 5648435 A1G_04110 Rickettsia rickettsii str. 'Sheila Smith' putrescine-ornithine antiporter YP_001494844.1 706092 R 392021 CDS YP_001494845.1 157828603 5648436 complement(708397..708729) 1 NC_009882.1 COG0316 Uncharacterized conserved protein; Iron-sulfur cluster assembly accessory protein 708729 5648436 A1G_04115 Rickettsia rickettsii str. 'Sheila Smith' Iron-sulfur cluster assembly accessory protein YP_001494845.1 708397 R 392021 CDS YP_001494846.1 157828604 5648437 complement(708733..709128) 1 NC_009882.1 COG0822 NifU homolog involved in Fe-S cluster formation; scaffold protein 709128 5648437 A1G_04120 Rickettsia rickettsii str. 'Sheila Smith' scaffold protein YP_001494846.1 708733 R 392021 CDS YP_001494847.1 157828605 5648438 complement(709280..710512) 1 NC_009882.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 710512 5648438 A1G_04125 Rickettsia rickettsii str. 'Sheila Smith' cysteine desulfurase YP_001494847.1 709280 R 392021 CDS YP_001494848.1 157828606 5648439 complement(710615..711733) 1 NC_009882.1 COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; hypothetical protein 711733 5648439 A1G_04130 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494848.1 710615 R 392021 CDS YP_001494849.1 157828607 5647707 complement(711730..712149) 1 NC_009882.1 COG1959 Predicted transcriptional regulator; hypothetical protein 712149 5647707 A1G_04135 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494849.1 711730 R 392021 CDS YP_001494850.1 157828608 5647708 complement(712607..712771) 1 NC_009882.1 hypothetical protein 712771 5647708 A1G_04140 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494850.1 712607 R 392021 CDS YP_001494851.1 157828609 5647709 complement(714178..715050) 1 NC_009882.1 hypothetical protein 715050 5647709 A1G_04155 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494851.1 714178 R 392021 CDS YP_001494852.1 157828610 5647710 complement(715062..715217) 1 NC_009882.1 hypothetical protein 715217 5647710 A1G_04160 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494852.1 715062 R 392021 CDS YP_001494853.1 157828611 5647711 complement(715344..715502) 1 NC_009882.1 transposase 715502 5647711 A1G_04165 Rickettsia rickettsii str. 'Sheila Smith' transposase YP_001494853.1 715344 R 392021 CDS YP_001494854.1 157828612 5647712 715675..715911 1 NC_009882.1 hypothetical protein 715911 5647712 A1G_04170 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494854.1 715675 D 392021 CDS YP_001494855.1 157828613 5647713 716257..716589 1 NC_009882.1 COG4804 Uncharacterized conserved protein; hypothetical protein 716589 5647713 A1G_04175 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494855.1 716257 D 392021 CDS YP_001494856.1 157828614 5647714 716784..717233 1 NC_009882.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; hypothetical protein 717233 5647714 A1G_04180 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494856.1 716784 D 392021 CDS YP_001494857.1 157828615 5647715 complement(717789..718817) 1 NC_009882.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 718817 5647715 A1G_04195 Rickettsia rickettsii str. 'Sheila Smith' isopentenyl pyrophosphate isomerase YP_001494857.1 717789 R 392021 CDS YP_001494858.1 157828616 5647884 complement(719856..720461) 1 NC_009882.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 720461 clpP 5647884 clpP Rickettsia rickettsii str. 'Sheila Smith' ATP-dependent Clp protease proteolytic subunit YP_001494858.1 719856 R 392021 CDS YP_001494859.1 157828617 5647885 complement(722595..723254) 1 NC_009882.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 723254 cmk 5647885 cmk Rickettsia rickettsii str. 'Sheila Smith' cytidylate kinase YP_001494859.1 722595 R 392021 CDS YP_001494860.1 157828618 5647886 complement(723376..723654) 1 NC_009882.1 COG1396 Predicted transcriptional regulators; hypothetical protein 723654 5647886 A1G_04220 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494860.1 723376 R 392021 CDS YP_001494861.1 157828619 5647888 724653..724874 1 NC_009882.1 hypothetical protein 724874 5647888 A1G_04230 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494861.1 724653 D 392021 CDS YP_001494862.1 157828620 5647889 725987..726589 1 NC_009882.1 hypothetical protein 726589 5647889 A1G_04240 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494862.1 725987 D 392021 CDS YP_001494863.1 157828621 5647890 726719..726973 1 NC_009882.1 hypothetical protein 726973 5647890 A1G_04245 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494863.1 726719 D 392021 CDS YP_001494864.1 157828622 5647891 726966..727136 1 NC_009882.1 hypothetical protein 727136 5647891 A1G_04250 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494864.1 726966 D 392021 CDS YP_001494865.1 157828623 5647892 complement(727037..727231) 1 NC_009882.1 hypothetical protein 727231 5647892 A1G_04255 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494865.1 727037 R 392021 CDS YP_001494866.1 157828624 5648629 complement(727242..727442) 1 NC_009882.1 COG1373 Predicted ATPase (AAA+ superfamily); hypothetical protein 727442 5648629 A1G_04260 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494866.1 727242 R 392021 CDS YP_001494867.1 157828625 5648630 complement(727544..727681) 1 NC_009882.1 hypothetical protein 727681 5648630 A1G_04265 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494867.1 727544 R 392021 CDS YP_001494868.1 157828626 5648631 complement(727639..727818) 1 NC_009882.1 hypothetical protein 727818 5648631 A1G_04270 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494868.1 727639 R 392021 CDS YP_001494869.1 157828627 5648632 complement(728207..729262) 1 NC_009882.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 729262 hemC 5648632 hemC Rickettsia rickettsii str. 'Sheila Smith' porphobilinogen deaminase YP_001494869.1 728207 R 392021 CDS YP_001494870.1 157828628 5648633 complement(729259..730245) 1 NC_009882.1 COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF; hypothetical protein 730245 5648633 A1G_04280 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494870.1 729259 R 392021 CDS YP_001494871.1 157828629 5648634 complement(730501..730629) 1 NC_009882.1 COG0642 Signal transduction histidine kinase; Na+/proline symporter and signal transduction histidine kinase 730629 5648634 A1G_04285 Rickettsia rickettsii str. 'Sheila Smith' Na+/proline symporter and signal transduction histidine kinase YP_001494871.1 730501 R 392021 CDS YP_001494872.1 157828630 5648635 complement(730683..731081) 1 NC_009882.1 COG0642 Signal transduction histidine kinase; two-component sensor histidine kinase 731081 5648635 A1G_04290 Rickettsia rickettsii str. 'Sheila Smith' two-component sensor histidine kinase YP_001494872.1 730683 R 392021 CDS YP_001494873.1 157828631 5648636 complement(733087..733692) 1 NC_009882.1 COG0666 FOG: Ankyrin repeat; hypothetical protein 733692 5648636 A1G_04305 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494873.1 733087 R 392021 CDS YP_001494874.1 157828632 5648637 complement(733710..734048) 1 NC_009882.1 hypothetical protein 734048 5648637 A1G_04310 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494874.1 733710 R 392021 CDS YP_001494875.1 157828633 5648638 complement(734371..735378) 1 NC_009882.1 COG0354 Predicted aminomethyltransferase related to GcvT; hypothetical protein 735378 5648638 A1G_04315 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494875.1 734371 R 392021 CDS YP_001494876.1 157828634 5648639 735491..736282 1 NC_009882.1 COG1723 Uncharacterized conserved protein; hypothetical protein 736282 5648639 A1G_04320 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494876.1 735491 D 392021 CDS YP_001494877.1 157828635 5648440 736292..737137 1 NC_009882.1 COG0349 Ribonuclease D; ribonuclease D 737137 5648440 A1G_04325 Rickettsia rickettsii str. 'Sheila Smith' ribonuclease D YP_001494877.1 736292 D 392021 CDS YP_001494878.1 157828636 5648441 complement(737266..737403) 1 NC_009882.1 hypothetical protein 737403 5648441 A1G_04330 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494878.1 737266 R 392021 CDS YP_001494879.1 157828637 5648442 complement(737500..738021) 1 NC_009882.1 COG0212 5-formyltetrahydrofolate cyclo-ligase; hypothetical protein 738021 5648442 A1G_04335 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494879.1 737500 R 392021 CDS YP_001494880.1 157828638 5648443 complement(738313..739692) 1 NC_009882.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 739692 5648443 A1G_04340 Rickettsia rickettsii str. 'Sheila Smith' dihydrolipoamide dehydrogenase YP_001494880.1 738313 R 392021 CDS YP_001494881.1 157828639 5648444 complement(739845..740525) 1 NC_009882.1 COG0500 SAM-dependent methyltransferases; biotin synthesis protein BioC 740525 5648444 A1G_04345 Rickettsia rickettsii str. 'Sheila Smith' biotin synthesis protein BioC YP_001494881.1 739845 R 392021 CDS YP_001494882.1 157828640 5648445 complement(740596..741051) 1 NC_009882.1 hypothetical protein 741051 5648445 A1G_04350 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494882.1 740596 R 392021 CDS YP_001494883.1 157828641 5648446 complement(741148..741372) 1 NC_009882.1 COG0338 Site-specific DNA methylase; hypothetical protein 741372 5648446 A1G_04355 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494883.1 741148 R 392021 CDS YP_001494884.1 157828642 5648447 complement(741700..741918) 1 NC_009882.1 hypothetical protein 741918 5648447 A1G_04360 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494884.1 741700 R 392021 CDS YP_001494885.1 157828643 5648448 complement(742042..742599) 1 NC_009882.1 putative transposable insertion element 742599 5648448 A1G_04365 Rickettsia rickettsii str. 'Sheila Smith' putative transposable insertion element YP_001494885.1 742042 R 392021 CDS YP_001494886.1 157828644 5648449 complement(742906..743391) 1 NC_009882.1 hypothetical protein 743391 5648449 A1G_04370 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494886.1 742906 R 392021 CDS YP_001494887.1 157828645 5648450 complement(743396..744085) 1 NC_009882.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); hypothetical protein 744085 5648450 A1G_04375 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494887.1 743396 R 392021 CDS YP_001494888.1 157828646 5647492 complement(744340..744717) 1 NC_009882.1 hypothetical protein 744717 5647492 A1G_04380 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494888.1 744340 R 392021 CDS YP_001494889.1 157828647 5647493 complement(744808..745002) 1 NC_009882.1 hypothetical protein 745002 5647493 A1G_04385 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494889.1 744808 R 392021 CDS YP_001494890.1 157828648 5647494 complement(745248..745430) 1 NC_009882.1 hypothetical protein 745430 5647494 A1G_04390 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494890.1 745248 R 392021 CDS YP_001494891.1 157828649 5647495 745740..745865 1 NC_009882.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 745865 rpmJ 5647495 rpmJ Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L36 YP_001494891.1 745740 D 392021 CDS YP_001494892.1 157828650 5647496 746072..746833 1 NC_009882.1 COG0217 Uncharacterized conserved protein; hypothetical protein 746833 5647496 A1G_04400 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494892.1 746072 D 392021 CDS YP_001494893.1 157828651 5647497 746830..747576 1 NC_009882.1 COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); UDP-N-acetylglucosamine pyrophosphorylase 747576 5647497 A1G_04405 Rickettsia rickettsii str. 'Sheila Smith' UDP-N-acetylglucosamine pyrophosphorylase YP_001494893.1 746830 D 392021 CDS YP_001494894.1 157828652 5647499 complement(748155..748277) 1 NC_009882.1 hypothetical protein 748277 5647499 A1G_04410 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494894.1 748155 R 392021 CDS YP_001494895.1 157828653 5647500 748972..749241 1 NC_009882.1 hypothetical protein 749241 5647500 A1G_04415 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494895.1 748972 D 392021 CDS YP_001494896.1 157828654 5647501 complement(750129..750371) 1 NC_009882.1 hypothetical protein 750371 5647501 A1G_04420 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494896.1 750129 R 392021 CDS YP_001494897.1 157828655 5647943 complement(750434..750742) 1 NC_009882.1 COG1694 Predicted pyrophosphatase; hypothetical protein 750742 5647943 A1G_04425 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494897.1 750434 R 392021 CDS YP_001494898.1 157828656 5647944 complement(750872..751162) 1 NC_009882.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; hypothetical protein 751162 5647944 A1G_04430 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494898.1 750872 R 392021 CDS YP_001494899.1 157828657 5647945 751228..751392 1 NC_009882.1 hypothetical protein 751392 5647945 A1G_04435 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494899.1 751228 D 392021 CDS YP_001494900.1 157828658 5647946 751482..751889 1 NC_009882.1 COG0466 ATP-dependent Lon protease, bacterial type; hypothetical protein 751889 5647946 A1G_04440 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494900.1 751482 D 392021 CDS YP_001494901.1 157828659 5647947 752147..752299 1 NC_009882.1 hypothetical protein 752299 5647947 A1G_04445 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494901.1 752147 D 392021 CDS YP_001494902.1 157828660 5647948 752353..752586 1 NC_009882.1 hypothetical protein 752586 5647948 A1G_04450 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494902.1 752353 D 392021 CDS YP_001494903.1 157828661 5647949 complement(753573..753704) 1 NC_009882.1 NTPase 753704 5647949 A1G_04465 Rickettsia rickettsii str. 'Sheila Smith' NTPase YP_001494903.1 753573 R 392021 CDS YP_001494904.1 157828662 5647950 754414..754530 1 NC_009882.1 NADH dehydrogenase subunit N 754530 5647950 A1G_04470 Rickettsia rickettsii str. 'Sheila Smith' NADH dehydrogenase subunit N YP_001494904.1 754414 D 392021 CDS YP_001494905.1 157828663 5647951 complement(754527..754643) 1 NC_009882.1 hypothetical protein 754643 5647951 A1G_04475 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494905.1 754527 R 392021 CDS YP_001494906.1 157828664 5647952 755131..756507 1 NC_009882.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 756507 5647952 A1G_04480 Rickettsia rickettsii str. 'Sheila Smith' NADH dehydrogenase subunit N YP_001494906.1 755131 D 392021 CDS YP_001494907.1 157828665 5647953 complement(756494..758035) 1 NC_009882.1 hypothetical protein 758035 5647953 A1G_04485 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494907.1 756494 R 392021 CDS YP_001494908.1 157828666 5647452 complement(758100..759116) 1 NC_009882.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 759116 5647452 A1G_04490 Rickettsia rickettsii str. 'Sheila Smith' delta-aminolevulinic acid dehydratase YP_001494908.1 758100 R 392021 CDS YP_001494909.1 157828667 5647453 759283..759360 1 NC_009882.1 hypothetical protein 759360 5647453 A1G_04495 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494909.1 759283 D 392021 CDS YP_001494910.1 157828668 5647454 complement(759365..759589) 1 NC_009882.1 hypothetical protein 759589 5647454 A1G_04500 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494910.1 759365 R 392021 CDS YP_001494911.1 157828669 5647455 759944..760222 1 NC_009882.1 hypothetical protein 760222 5647455 A1G_04505 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494911.1 759944 D 392021 CDS YP_001494912.1 157828670 5647456 complement(760308..762254) 1 NC_009882.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 762254 5647456 A1G_04510 Rickettsia rickettsii str. 'Sheila Smith' primosome assembly protein PriA YP_001494912.1 760308 R 392021 CDS YP_001494913.1 157828671 5647457 762318..762893 1 NC_009882.1 COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; aromatic acid decarboxylase 762893 5647457 A1G_04515 Rickettsia rickettsii str. 'Sheila Smith' aromatic acid decarboxylase YP_001494913.1 762318 D 392021 CDS YP_001494914.1 157828672 5647458 complement(762985..763290) 1 NC_009882.1 hypothetical protein 763290 5647458 A1G_04520 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494914.1 762985 R 392021 CDS YP_001494915.1 157828673 5647459 763260..764744 1 NC_009882.1 unwinds double stranded DNA; replicative DNA helicase 764744 5647459 A1G_04525 Rickettsia rickettsii str. 'Sheila Smith' replicative DNA helicase YP_001494915.1 763260 D 392021 CDS YP_001494916.1 157828674 5647460 complement(764904..765113) 1 NC_009882.1 hypothetical protein 765113 5647460 A1G_04530 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494916.1 764904 R 392021 CDS YP_001494917.1 157828675 5647461 complement(766113..766217) 1 NC_009882.1 COG0814 Amino acid permeases; hypothetical protein 766217 5647461 A1G_04545 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494917.1 766113 R 392021 CDS YP_001494918.1 157828676 5648462 766607..767299 1 NC_009882.1 COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; ribosomal large subunit pseudouridine synthase B 767299 5648462 A1G_04550 Rickettsia rickettsii str. 'Sheila Smith' ribosomal large subunit pseudouridine synthase B YP_001494918.1 766607 D 392021 CDS YP_001494919.1 157828677 5648463 767346..770225 1 NC_009882.1 COG1357 Uncharacterized low-complexity proteins; hypothetical protein 770225 5648463 A1G_04555 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494919.1 767346 D 392021 CDS YP_001494920.1 157828678 5648464 770230..770967 1 NC_009882.1 COG0742 N6-adenine-specific methylase; hypothetical protein 770967 5648464 A1G_04560 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494920.1 770230 D 392021 CDS YP_001494921.1 157828679 5648465 771113..772447 1 NC_009882.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 772447 5648465 A1G_04565 Rickettsia rickettsii str. 'Sheila Smith' DNA repair protein RadA YP_001494921.1 771113 D 392021 CDS YP_001494922.1 157828680 5648466 772444..772758 1 NC_009882.1 COG0191 Fructose/tagatose bisphosphate aldolase; hypothetical protein 772758 5648466 A1G_04570 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494922.1 772444 D 392021 CDS YP_001494923.1 157828681 5648467 772880..773593 1 NC_009882.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 773593 recO 5648467 recO Rickettsia rickettsii str. 'Sheila Smith' DNA repair protein RecO YP_001494923.1 772880 D 392021 CDS YP_001494924.1 157828682 5648468 773745..773894 1 NC_009882.1 hypothetical protein 773894 5648468 A1G_04580 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494924.1 773745 D 392021 CDS YP_001494925.1 157828683 5648469 774111..774803 1 NC_009882.1 COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone; hypothetical protein 774803 5648469 A1G_04585 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494925.1 774111 D 392021 CDS YP_001494926.1 157828684 5648470 complement(774860..776122) 1 NC_009882.1 hypothetical protein 776122 5648470 A1G_04590 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494926.1 774860 R 392021 CDS YP_001494927.1 157828685 5648471 complement(776495..778990) 1 NC_009882.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 778990 infB 5648471 infB Rickettsia rickettsii str. 'Sheila Smith' translation initiation factor IF-2 YP_001494927.1 776495 R 392021 CDS YP_001494928.1 157828686 5648472 complement(779229..780740) 1 NC_009882.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 780740 nusA 5648472 nusA Rickettsia rickettsii str. 'Sheila Smith' transcription elongation factor NusA YP_001494928.1 779229 R 392021 CDS YP_001494929.1 157828687 5647534 complement(780751..781236) 1 NC_009882.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 781236 5647534 A1G_04605 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494929.1 780751 R 392021 CDS YP_001494930.1 157828688 5647535 complement(781410..781766) 1 NC_009882.1 hypothetical protein 781766 5647535 A1G_04610 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494930.1 781410 R 392021 CDS YP_001494931.1 157828689 5647536 complement(782288..782686) 1 NC_009882.1 hypothetical protein 782686 5647536 A1G_04615 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494931.1 782288 R 392021 CDS YP_001494932.1 157828690 5647537 782754..783182 1 NC_009882.1 COG1959 Predicted transcriptional regulator; hypothetical protein 783182 5647537 A1G_04620 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494932.1 782754 D 392021 CDS YP_001494933.1 157828691 5647538 complement(783177..783932) 1 NC_009882.1 COG1189 Predicted rRNA methylase; hemolysin 783932 5647538 A1G_04625 Rickettsia rickettsii str. 'Sheila Smith' hemolysin YP_001494933.1 783177 R 392021 CDS YP_001494934.1 157828692 5647539 complement(784091..785326) 1 NC_009882.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 785326 5647539 A1G_04630 Rickettsia rickettsii str. 'Sheila Smith' tyrosyl-tRNA synthetase YP_001494934.1 784091 R 392021 CDS YP_001494935.1 157828693 5647540 complement(785330..785572) 1 NC_009882.1 hypothetical protein 785572 5647540 A1G_04635 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494935.1 785330 R 392021 CDS YP_001494936.1 157828694 5647541 complement(785619..785870) 1 NC_009882.1 COG5304 Uncharacterized protein conserved in bacteria; hypothetical protein 785870 5647541 A1G_04640 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494936.1 785619 R 392021 CDS YP_001494937.1 157828695 5647542 785938..786195 1 NC_009882.1 hypothetical protein 786195 5647542 A1G_04645 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494937.1 785938 D 392021 CDS YP_001494938.1 157828696 5647543 complement(786362..786574) 1 NC_009882.1 hypothetical protein 786574 5647543 A1G_04650 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494938.1 786362 R 392021 CDS YP_001494939.1 157828697 5648080 787589..787804 1 NC_009882.1 COG3547 Transposase and inactivated derivatives; hypothetical protein 787804 5648080 A1G_04655 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494939.1 787589 D 392021 CDS YP_001494940.1 157828698 5648081 complement(788010..788489) 1 NC_009882.1 COG0522 Ribosomal protein S4 and related proteins; hypothetical protein 788489 5648081 A1G_04660 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494940.1 788010 R 392021 CDS YP_001494941.1 157828699 5648082 complement(788694..789062) 1 NC_009882.1 hypothetical protein 789062 5648082 A1G_04665 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494941.1 788694 R 392021 CDS YP_001494942.1 157828700 5648083 complement(789109..789321) 1 NC_009882.1 hypothetical protein 789321 5648083 A1G_04670 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494942.1 789109 R 392021 CDS YP_001494943.1 157828701 5648084 complement(789605..789805) 1 NC_009882.1 hypothetical protein 789805 5648084 A1G_04675 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494943.1 789605 R 392021 CDS YP_001494944.1 157828702 5648085 789804..790016 1 NC_009882.1 COG2271 Sugar phosphate permease; hypothetical protein 790016 5648085 A1G_04680 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494944.1 789804 D 392021 CDS YP_001494945.1 157828703 5648086 complement(790042..790344) 1 NC_009882.1 hypothetical protein 790344 5648086 A1G_04685 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494945.1 790042 R 392021 CDS YP_001494946.1 157828704 5648087 complement(790365..790607) 1 NC_009882.1 hypothetical protein 790607 5648087 A1G_04690 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494946.1 790365 R 392021 CDS YP_001494947.1 157828705 5648088 790606..790680 1 NC_009882.1 hypothetical protein 790680 5648088 A1G_04695 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494947.1 790606 D 392021 CDS YP_001494948.1 157828706 5648089 complement(790797..791063) 1 NC_009882.1 hypothetical protein 791063 5648089 A1G_04700 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494948.1 790797 R 392021 CDS YP_001494949.1 157828707 5648410 complement(791241..792527) 1 NC_009882.1 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase 792527 5648410 A1G_04705 Rickettsia rickettsii str. 'Sheila Smith' 2-octaprenyl-6-methoxyphenyl hydroxylase YP_001494949.1 791241 R 392021 CDS YP_001494950.1 157828708 5648411 complement(792508..792774) 1 NC_009882.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit F 792774 5648411 A1G_04710 Rickettsia rickettsii str. 'Sheila Smith' putative monovalent cation/H+ antiporter subunit F YP_001494950.1 792508 R 392021 CDS YP_001494951.1 157828709 5648412 793311..794735 1 NC_009882.1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; nitrogen assimilation regulatory protein ntrX 794735 5648412 A1G_04715 Rickettsia rickettsii str. 'Sheila Smith' nitrogen assimilation regulatory protein ntrX YP_001494951.1 793311 D 392021 CDS YP_001494952.1 157828710 5648413 794728..796473 1 NC_009882.1 COG1357 Uncharacterized low-complexity proteins; hypothetical protein 796473 5648413 A1G_04720 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494952.1 794728 D 392021 CDS YP_001494953.1 157828711 5648414 complement(796695..797654) 1 NC_009882.1 hypothetical protein 797654 5648414 A1G_04725 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494953.1 796695 R 392021 CDS YP_001494954.1 157828712 5648415 complement(798333..800114) 1 NC_009882.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein 800114 5648415 A1G_04730 Rickettsia rickettsii str. 'Sheila Smith' penicillin-binding protein YP_001494954.1 798333 R 392021 CDS YP_001494955.1 157828713 5648416 complement(800104..800625) 1 NC_009882.1 hypothetical protein 800625 5648416 A1G_04735 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494955.1 800104 R 392021 CDS YP_001494956.1 157828714 5648417 complement(800875..801009) 1 NC_009882.1 hypothetical protein 801009 5648417 A1G_04740 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494956.1 800875 R 392021 CDS YP_001494957.1 157828715 5648418 complement(801240..802925) 1 NC_009882.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein 802925 5648418 A1G_04745 Rickettsia rickettsii str. 'Sheila Smith' penicillin-binding protein YP_001494957.1 801240 R 392021 CDS YP_001494958.1 157828716 5648419 complement(803269..803667) 1 NC_009882.1 cell division protein FtsL 803667 5648419 A1G_04750 Rickettsia rickettsii str. 'Sheila Smith' cell division protein FtsL YP_001494958.1 803269 R 392021 CDS YP_001494959.1 157828717 5648420 complement(803674..804573) 1 NC_009882.1 COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; S-adenosyl-methyltransferase MraW 804573 mraW 5648420 mraW Rickettsia rickettsii str. 'Sheila Smith' S-adenosyl-methyltransferase MraW YP_001494959.1 803674 R 392021 CDS YP_001494960.1 157828718 5647832 complement(804597..805046) 1 NC_009882.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 805046 5647832 A1G_04760 Rickettsia rickettsii str. 'Sheila Smith' cell division protein MraZ YP_001494960.1 804597 R 392021 CDS YP_001494962.1 157828720 5647834 805983..807380 1 NC_009882.1 COG0591 Na+/proline symporter; sodium/pantothenate symporter 807380 5647834 A1G_04770 Rickettsia rickettsii str. 'Sheila Smith' sodium/pantothenate symporter YP_001494962.1 805983 D 392021 CDS YP_001494963.1 157828721 5647835 807614..807820 1 NC_009882.1 hypothetical protein 807820 5647835 A1G_04775 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494963.1 807614 D 392021 CDS YP_001494964.1 157828722 5647836 complement(808009..809928) 1 NC_009882.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 809928 uvrC 5647836 uvrC Rickettsia rickettsii str. 'Sheila Smith' excinuclease ABC subunit C YP_001494964.1 808009 R 392021 CDS YP_001494965.1 157828723 5647837 complement(810092..810619) 1 NC_009882.1 COG2847 Uncharacterized protein conserved in bacteria; hypothetical protein 810619 5647837 A1G_04785 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494965.1 810092 R 392021 CDS YP_001494966.1 157828724 5647838 complement(810673..811194) 1 NC_009882.1 COG4912 Predicted DNA alkylation repair enzyme; hypothetical protein 811194 5647838 A1G_04790 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494966.1 810673 R 392021 CDS YP_001494967.1 157828725 5647839 complement(811431..811589) 1 NC_009882.1 COG0350 Methylated DNA-protein cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase 811589 5647839 A1G_04795 Rickettsia rickettsii str. 'Sheila Smith' methylated-DNA--protein-cysteine methyltransferase YP_001494967.1 811431 R 392021 CDS YP_001494968.1 157828726 5647840 complement(811673..811798) 1 NC_009882.1 hypothetical protein 811798 5647840 A1G_04800 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494968.1 811673 R 392021 CDS YP_001494969.1 157828727 5647841 complement(811851..811979) 1 NC_009882.1 COG2169 Adenosine deaminase; methylated-DNA--protein-cysteine methyltransferase 811979 5647841 A1G_04805 Rickettsia rickettsii str. 'Sheila Smith' methylated-DNA--protein-cysteine methyltransferase YP_001494969.1 811851 R 392021 CDS YP_001494970.1 157828728 5647842 complement(812132..812377) 1 NC_009882.1 COG2169 Adenosine deaminase; hypothetical protein 812377 5647842 A1G_04810 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494970.1 812132 R 392021 CDS YP_001494971.1 157828729 5648306 complement(812467..812973) 1 NC_009882.1 COG0350 Methylated DNA-protein cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase 812973 5648306 A1G_04815 Rickettsia rickettsii str. 'Sheila Smith' methylated-DNA--protein-cysteine methyltransferase YP_001494971.1 812467 R 392021 CDS YP_001494972.1 157828730 5648307 813069..813212 1 NC_009882.1 hypothetical protein 813212 5648307 A1G_04820 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494972.1 813069 D 392021 CDS YP_001494973.1 157828731 5648308 813263..813451 1 NC_009882.1 hypothetical protein 813451 5648308 A1G_04825 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494973.1 813263 D 392021 CDS YP_001494974.1 157828732 5648309 813587..813694 1 NC_009882.1 hypothetical protein 813694 5648309 A1G_04830 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494974.1 813587 D 392021 CDS YP_001494975.1 157828733 5648310 complement(813740..813871) 1 NC_009882.1 Type I site-specific restriction-modification system, R (restriction) subunit 813871 5648310 A1G_04835 Rickettsia rickettsii str. 'Sheila Smith' Type I site-specific restriction-modification system, R (restriction) subunit YP_001494975.1 813740 R 392021 CDS YP_001494976.1 157828734 5648311 complement(814355..814522) 1 NC_009882.1 hypothetical protein 814522 5648311 A1G_04840 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494976.1 814355 R 392021 CDS YP_001494977.1 157828735 5648313 complement(815143..815352) 1 NC_009882.1 hypothetical protein 815352 5648313 A1G_04845 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494977.1 815143 R 392021 CDS YP_001494978.1 157828736 5648314 complement(815700..815948) 1 NC_009882.1 COG0666 FOG: Ankyrin repeat; ankyrin repeat-containing protein 815948 5648314 A1G_04850 Rickettsia rickettsii str. 'Sheila Smith' ankyrin repeat-containing protein YP_001494978.1 815700 R 392021 CDS YP_001494979.1 157828737 5648315 complement(816968..819688) 1 NC_009882.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 819688 5648315 A1G_04855 Rickettsia rickettsii str. 'Sheila Smith' preprotein translocase subunit SecA YP_001494979.1 816968 R 392021 CDS YP_001494980.1 157828738 5648090 819904..820752 1 NC_009882.1 COG0760 Parvulin-like peptidyl-prolyl isomerase; protein export protein prsA 820752 5648090 A1G_04860 Rickettsia rickettsii str. 'Sheila Smith' protein export protein prsA YP_001494980.1 819904 D 392021 CDS YP_001494981.1 157828739 5648091 complement(820962..821357) 1 NC_009882.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 821357 acpS 5648091 acpS Rickettsia rickettsii str. 'Sheila Smith' 4'-phosphopantetheinyl transferase YP_001494981.1 820962 R 392021 CDS YP_001494982.1 157828740 5648092 complement(821358..821741) 1 NC_009882.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 821741 rpoZ 5648092 rpoZ Rickettsia rickettsii str. 'Sheila Smith' DNA-directed RNA polymerase subunit omega YP_001494982.1 821358 R 392021 CDS YP_001494983.1 157828741 5648093 complement(821920..823179) 1 NC_009882.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 823179 5648093 A1G_04875 Rickettsia rickettsii str. 'Sheila Smith' UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001494983.1 821920 R 392021 CDS YP_001494984.1 157828742 5648094 complement(823271..825694) 1 NC_009882.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 825694 gyrB 5648094 gyrB Rickettsia rickettsii str. 'Sheila Smith' DNA gyrase subunit B YP_001494984.1 823271 R 392021 CDS YP_001494985.1 157828743 5648095 825800..826660 1 NC_009882.1 COG0647 Predicted sugar phosphatases of the HAD superfamily; hypothetical protein 826660 5648095 A1G_04885 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494985.1 825800 D 392021 CDS YP_001494986.1 157828744 5648097 827165..828535 1 NC_009882.1 COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); magnesium transporter 828535 5648097 A1G_04890 Rickettsia rickettsii str. 'Sheila Smith' magnesium transporter YP_001494986.1 827165 D 392021 CDS YP_001494987.1 157828745 5648098 complement(828546..828830) 1 NC_009882.1 hypothetical protein 828830 5648098 A1G_04895 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494987.1 828546 R 392021 CDS YP_001494988.1 157828746 5648597 829268..829597 1 NC_009882.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; hypothetical protein 829597 5648597 A1G_04900 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494988.1 829268 D 392021 CDS YP_001494989.1 157828747 5648598 complement(830507..830629) 1 NC_009882.1 hypothetical protein 830629 5648598 A1G_04915 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494989.1 830507 R 392021 CDS YP_001494990.1 157828748 5648599 830746..830976 1 NC_009882.1 hypothetical protein 830976 5648599 A1G_04920 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494990.1 830746 D 392021 CDS YP_001494991.1 157828749 5648601 complement(831622..831852) 1 NC_009882.1 COG4710 Predicted DNA-binding protein with an HTH domain; antitoxin of toxin-antitoxin system 831852 5648601 A1G_04925 Rickettsia rickettsii str. 'Sheila Smith' antitoxin of toxin-antitoxin system YP_001494991.1 831622 R 392021 CDS YP_001494992.1 157828750 5648602 832062..832241 1 NC_009882.1 hypothetical protein 832241 5648602 A1G_04930 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494992.1 832062 D 392021 CDS YP_001494993.1 157828751 5648603 832252..832677 1 NC_009882.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 832677 yajC 5648603 yajC Rickettsia rickettsii str. 'Sheila Smith' preprotein translocase subunit YajC YP_001494993.1 832252 D 392021 CDS YP_001494994.1 157828752 5648604 832661..834217 1 NC_009882.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 834217 secD 5648604 secD Rickettsia rickettsii str. 'Sheila Smith' preprotein translocase subunit SecD YP_001494994.1 832661 D 392021 CDS YP_001494995.1 157828753 5648605 834462..835079 1 NC_009882.1 COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems; sco2 protein 835079 5648605 A1G_04945 Rickettsia rickettsii str. 'Sheila Smith' sco2 protein YP_001494995.1 834462 D 392021 CDS YP_001494996.1 157828754 5648606 835181..835567 1 NC_009882.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 835567 5648606 A1G_04950 Rickettsia rickettsii str. 'Sheila Smith' cytochrome c-type biogenesis protein CcmE YP_001494996.1 835181 D 392021 CDS YP_001494997.1 157828755 5648018 835693..836214 1 NC_009882.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 836214 5648018 A1G_04955 Rickettsia rickettsii str. 'Sheila Smith' inorganic pyrophosphatase YP_001494997.1 835693 D 392021 CDS YP_001494998.1 157828756 5648019 836437..838092 1 NC_009882.1 COG0728 Uncharacterized membrane protein, putative virulence factor; virulence factor mviN 838092 5648019 A1G_04960 Rickettsia rickettsii str. 'Sheila Smith' virulence factor mviN YP_001494998.1 836437 D 392021 CDS YP_001494999.1 157828757 5648020 838073..838825 1 NC_009882.1 hypothetical protein 838825 5648020 A1G_04965 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001494999.1 838073 D 392021 CDS YP_001495000.1 157828758 5648021 838905..839507 1 NC_009882.1 hypothetical protein 839507 5648021 A1G_04970 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495000.1 838905 D 392021 CDS YP_001495001.1 157828759 5648022 complement(839715..841856) 1 NC_009882.1 COG1200 RecG-like helicase; ATP-dependent DNA helicase RecG 841856 5648022 A1G_04975 Rickettsia rickettsii str. 'Sheila Smith' ATP-dependent DNA helicase RecG YP_001495001.1 839715 R 392021 CDS YP_001495002.1 157828760 5648023 843432..844064 1 NC_009882.1 COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit; succinyl-CoA:3-ketoacid-coenzyme A transferase 844064 5648023 A1G_04995 Rickettsia rickettsii str. 'Sheila Smith' succinyl-CoA:3-ketoacid-coenzyme A transferase YP_001495002.1 843432 D 392021 CDS YP_001495003.1 157828761 5648024 844068..844703 1 NC_009882.1 COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit; succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B 844703 5648024 A1G_05000 Rickettsia rickettsii str. 'Sheila Smith' succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B YP_001495003.1 844068 D 392021 CDS YP_001495004.1 157828762 5648025 844785..845000 1 NC_009882.1 COG0655 Multimeric flavodoxin WrbA; tryptophan repressor binding protein 845000 5648025 A1G_05005 Rickettsia rickettsii str. 'Sheila Smith' tryptophan repressor binding protein YP_001495004.1 844785 D 392021 CDS YP_001495005.1 157828763 5648026 845049..845264 1 NC_009882.1 COG0655 Multimeric flavodoxin WrbA; tryptophan repressor binding protein 845264 5648026 A1G_05010 Rickettsia rickettsii str. 'Sheila Smith' tryptophan repressor binding protein YP_001495005.1 845049 D 392021 CDS YP_001495006.1 157828764 5648027 complement(845314..846798) 1 NC_009882.1 hypothetical protein 846798 5648027 A1G_05015 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495006.1 845314 R 392021 CDS YP_001495007.1 157828765 5648028 845765..845917 1 NC_009882.1 phospho-N-acetylmuramoyl-pentapeptide- transferase 845917 mraY 5648028 mraY Rickettsia rickettsii str. 'Sheila Smith' phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001495007.1 845765 D 392021 CDS YP_001495008.1 157828766 5647556 complement(846917..848002) 1 NC_009882.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 848002 mraY 5647556 mraY Rickettsia rickettsii str. 'Sheila Smith' phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001495008.1 846917 R 392021 CDS YP_001495009.1 157828767 5647557 complement(848187..849536) 1 NC_009882.1 COG0770 UDP-N-acetylmuramyl pentapeptide synthase; UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase 849536 5647557 A1G_05030 Rickettsia rickettsii str. 'Sheila Smith' UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase YP_001495009.1 848187 R 392021 CDS YP_001495010.1 157828768 5647558 complement(849744..851183) 1 NC_009882.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 851183 murE 5647558 murE Rickettsia rickettsii str. 'Sheila Smith' UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001495010.1 849744 R 392021 CDS YP_001495011.1 157828769 5647559 complement(851330..854698) 1 NC_009882.1 COG1197 Transcription-repair coupling factor (superfamily II helicase); transcription-repair coupling factor 854698 5647559 A1G_05040 Rickettsia rickettsii str. 'Sheila Smith' transcription-repair coupling factor YP_001495011.1 851330 R 392021 CDS YP_001495012.1 157828770 5647560 complement(854710..854973) 1 NC_009882.1 COG2938 Uncharacterized conserved protein; hypothetical protein 854973 5647560 A1G_05045 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495012.1 854710 R 392021 CDS YP_001495013.1 157828771 5647561 855082..855504 1 NC_009882.1 COG0607 Rhodanese-related sulfurtransferase; hypothetical protein 855504 5647561 A1G_05050 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495013.1 855082 D 392021 CDS YP_001495014.1 157828772 5647562 855505..856896 1 NC_009882.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 856896 dnaA 5647562 dnaA Rickettsia rickettsii str. 'Sheila Smith' chromosomal replication initiation protein YP_001495014.1 855505 D 392021 CDS YP_001495015.1 157828773 5647563 complement(857674..857805) 1 NC_009882.1 hypothetical protein 857805 5647563 A1G_05060 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495015.1 857674 R 392021 CDS YP_001495016.1 157828774 5647564 complement(858145..858297) 1 NC_009882.1 hypothetical protein 858297 5647564 A1G_05065 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495016.1 858145 R 392021 CDS YP_001495017.1 157828775 5647565 complement(858671..858778) 1 NC_009882.1 hypothetical protein 858778 5647565 A1G_05070 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495017.1 858671 R 392021 CDS YP_001495018.1 157828776 5647566 complement(858893..859168) 1 NC_009882.1 hypothetical protein 859168 5647566 A1G_05075 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495018.1 858893 R 392021 CDS YP_001495019.1 157828777 5648368 complement(859197..859532) 1 NC_009882.1 hypothetical protein 859532 5648368 A1G_05080 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495019.1 859197 R 392021 CDS YP_001495020.1 157828778 5648369 859725..861197 1 NC_009882.1 COG3621 Patatin; patatin b1 861197 5648369 A1G_05085 Rickettsia rickettsii str. 'Sheila Smith' patatin b1 YP_001495020.1 859725 D 392021 CDS YP_001495021.1 157828779 5648370 861944..862105 1 NC_009882.1 hypothetical protein 862105 5648370 A1G_05090 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495021.1 861944 D 392021 CDS YP_001495022.1 157828780 5648371 complement(862325..862507) 1 NC_009882.1 COG0477 Permeases of the major facilitator superfamily; bicyclomycin resistance protein 862507 5648371 A1G_05095 Rickettsia rickettsii str. 'Sheila Smith' bicyclomycin resistance protein YP_001495022.1 862325 R 392021 CDS YP_001495023.1 157828781 5648372 complement(862536..862742) 1 NC_009882.1 nucleotidyltransferase/HEPN domain-containing protein 862742 5648372 A1G_05100 Rickettsia rickettsii str. 'Sheila Smith' nucleotidyltransferase/HEPN domain-containing protein YP_001495023.1 862536 R 392021 CDS YP_001495024.1 157828782 5648373 complement(862806..862967) 1 NC_009882.1 hypothetical protein 862967 5648373 A1G_05105 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495024.1 862806 R 392021 CDS YP_001495025.1 157828783 5648374 complement(863200..863343) 1 NC_009882.1 COG1708 Predicted nucleotidyltransferases; hypothetical protein 863343 5648374 A1G_05110 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495025.1 863200 R 392021 CDS YP_001495026.1 157828784 5648375 complement(863425..864522) 1 NC_009882.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 864522 5648375 A1G_05115 Rickettsia rickettsii str. 'Sheila Smith' GTP-dependent nucleic acid-binding protein EngD YP_001495026.1 863425 R 392021 CDS YP_001495027.1 157828785 5648376 complement(865151..865708) 1 NC_009882.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 865708 5648376 A1G_05130 Rickettsia rickettsii str. 'Sheila Smith' peptidyl-tRNA hydrolase YP_001495027.1 865151 R 392021 CDS YP_001495028.1 157828786 5648377 complement(866033..866644) 1 NC_009882.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 866644 5648377 A1G_05135 Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L25/general stress protein Ctc YP_001495028.1 866033 R 392021 CDS YP_001495029.1 157828787 5648378 complement(867395..868072) 1 NC_009882.1 COG0602 Organic radical activating enzymes; hypothetical protein 868072 5648378 A1G_05140 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495029.1 867395 R 392021 CDS YP_001495030.1 157828788 5647502 868239..868445 1 NC_009882.1 COG0291 Ribosomal protein L35; 50S ribosomal protein L35 868445 rpmI 5647502 rpmI Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L35 YP_001495030.1 868239 D 392021 CDS YP_001495031.1 157828789 5647503 868465..868818 1 NC_009882.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 868818 rplT 5647503 rplT Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L20 YP_001495031.1 868465 D 392021 CDS YP_001495032.1 157828790 5647504 868901..869035 1 NC_009882.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 869035 rpmH 5647504 rpmH Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L34 YP_001495032.1 868901 D 392021 CDS YP_001495033.1 157828791 5647505 869055..869411 1 NC_009882.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 869411 rnpA 5647505 rnpA Rickettsia rickettsii str. 'Sheila Smith' ribonuclease P YP_001495033.1 869055 D 392021 CDS YP_001495034.1 157828792 5647506 complement(869777..871627) 1 NC_009882.1 COG0666 FOG: Ankyrin repeat; hypothetical protein 871627 5647506 A1G_05165 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495034.1 869777 R 392021 CDS YP_001495035.1 157828793 5647507 complement(872021..872272) 1 NC_009882.1 COG1471 Ribosomal protein S4E; hypothetical protein 872272 5647507 A1G_05170 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495035.1 872021 R 392021 CDS YP_001495036.1 157828794 5647508 complement(872933..873031) 1 NC_009882.1 hypothetical protein 873031 5647508 A1G_05175 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495036.1 872933 R 392021 CDS YP_001495037.1 157828795 5647509 complement(873251..873499) 1 NC_009882.1 hypothetical protein 873499 5647509 A1G_05180 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495037.1 873251 R 392021 CDS YP_001495038.1 157828796 5647510 complement(873717..874676) 1 NC_009882.1 COG0598 Mg2+ and Co2+ transporters; magnesium and cobalt transport protein CorA 874676 5647510 A1G_05185 Rickettsia rickettsii str. 'Sheila Smith' magnesium and cobalt transport protein CorA YP_001495038.1 873717 R 392021 CDS YP_001495039.1 157828797 5647511 875046..875333 1 NC_009882.1 hypothetical protein 875333 5647511 A1G_05190 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495039.1 875046 D 392021 CDS YP_001495040.1 157828798 5647512 complement(875305..875454) 1 NC_009882.1 hypothetical protein 875454 5647512 A1G_05195 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495040.1 875305 R 392021 CDS YP_001495041.1 157828799 5648536 complement(878361..878948) 1 NC_009882.1 COG3173 Predicted aminoglycoside phosphotransferase; acetyltransferase 878948 5648536 A1G_05200 Rickettsia rickettsii str. 'Sheila Smith' acetyltransferase YP_001495041.1 878361 R 392021 CDS YP_001495042.1 157828800 5648537 complement(879047..879193) 1 NC_009882.1 COG3173 Predicted aminoglycoside phosphotransferase; acetyltransferase 879193 5648537 A1G_05205 Rickettsia rickettsii str. 'Sheila Smith' acetyltransferase YP_001495042.1 879047 R 392021 CDS YP_001495043.1 157828801 5648538 complement(879286..881085) 1 NC_009882.1 COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; nitrogen regulation protein ntrY 881085 5648538 A1G_05210 Rickettsia rickettsii str. 'Sheila Smith' nitrogen regulation protein ntrY YP_001495043.1 879286 R 392021 CDS YP_001495044.1 157828802 5648539 complement(881362..881451) 1 NC_009882.1 30S ribosomal protein S21 881451 rpsU 5648539 rpsU Rickettsia rickettsii str. 'Sheila Smith' 30S ribosomal protein S21 YP_001495044.1 881362 R 392021 CDS YP_001495045.1 157828803 5648540 complement(881444..881644) 1 NC_009882.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 881644 rpsU 5648540 rpsU Rickettsia rickettsii str. 'Sheila Smith' 30S ribosomal protein S21 YP_001495045.1 881444 R 392021 CDS YP_001495046.1 157828804 5648541 881723..882334 1 NC_009882.1 COG5590 Uncharacterized conserved protein; hypothetical protein 882334 5648541 A1G_05225 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495046.1 881723 D 392021 CDS YP_001495047.1 157828805 5648542 882344..882553 1 NC_009882.1 hypothetical protein 882553 5648542 A1G_05230 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495047.1 882344 D 392021 CDS YP_001495048.1 157828806 5648543 882978..883100 1 NC_009882.1 isoleucyl-tRNA synthetase 883100 ileS 5648543 ileS Rickettsia rickettsii str. 'Sheila Smith' isoleucyl-tRNA synthetase YP_001495048.1 882978 D 392021 CDS YP_001495049.1 157828807 5648544 883599..886910 1 NC_009882.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 886910 ileS 5648544 ileS Rickettsia rickettsii str. 'Sheila Smith' isoleucyl-tRNA synthetase YP_001495049.1 883599 D 392021 CDS YP_001495050.1 157828808 5648141 887373..887654 1 NC_009882.1 hypothetical protein 887654 5648141 A1G_05245 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495050.1 887373 D 392021 CDS YP_001495051.1 157828809 5648142 887825..888019 1 NC_009882.1 hypothetical protein 888019 5648142 A1G_05250 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495051.1 887825 D 392021 CDS YP_001495052.1 157828810 5648143 888729..888950 1 NC_009882.1 COG1729 Uncharacterized protein conserved in bacteria; hypothetical protein 888950 5648143 A1G_05255 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495052.1 888729 D 392021 CDS YP_001495053.1 157828811 5648144 complement(889108..889260) 1 NC_009882.1 hypothetical protein 889260 5648144 A1G_05260 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495053.1 889108 R 392021 CDS YP_001495054.1 157828812 5648145 complement(889253..891250) 1 NC_009882.1 COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit; propionyl-CoA carboxylase subunit alpha 891250 5648145 A1G_05265 Rickettsia rickettsii str. 'Sheila Smith' propionyl-CoA carboxylase subunit alpha YP_001495054.1 889253 R 392021 CDS YP_001495055.1 157828813 5648146 complement(891348..892892) 1 NC_009882.1 COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta); propionyl-CoA carboxylase subunit beta 892892 5648146 A1G_05270 Rickettsia rickettsii str. 'Sheila Smith' propionyl-CoA carboxylase subunit beta YP_001495055.1 891348 R 392021 CDS YP_001495056.1 157828814 5648147 892968..893216 1 NC_009882.1 hypothetical protein 893216 5648147 A1G_05275 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495056.1 892968 D 392021 CDS YP_001495057.1 157828815 5648148 893447..896869 1 NC_009882.1 Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein; acylglycerophosphoethanolamine acyltransferase 896869 5648148 A1G_05280 Rickettsia rickettsii str. 'Sheila Smith' acylglycerophosphoethanolamine acyltransferase YP_001495057.1 893447 D 392021 CDS YP_001495058.1 157828816 5648149 complement(897114..897251) 1 NC_009882.1 hypothetical protein 897251 5648149 A1G_05285 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495058.1 897114 R 392021 CDS YP_001495059.1 157828817 5648150 898234..899103 1 NC_009882.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 899103 5648150 A1G_05300 Rickettsia rickettsii str. 'Sheila Smith' 3-demethylubiquinone-9 3-methyltransferase YP_001495059.1 898234 D 392021 CDS YP_001495060.1 157828818 5648151 899402..900943 1 NC_009882.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 900943 gltX 5648151 gltX Rickettsia rickettsii str. 'Sheila Smith' glutamyl-tRNA synthetase YP_001495060.1 899402 D 392021 CDS YP_001495061.1 157828819 5647717 900940..901476 1 NC_009882.1 COG5342 Invasion protein B, involved in pathogenesis; hypothetical protein 901476 5647717 A1G_05310 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495061.1 900940 D 392021 CDS YP_001495062.1 157828820 5647718 complement(901727..901984) 1 NC_009882.1 chaperonin GroEL 901984 groEL 5647718 groEL Rickettsia rickettsii str. 'Sheila Smith' chaperonin GroEL YP_001495062.1 901727 R 392021 CDS YP_001495063.1 157828821 5647719 complement(903262..904905) 1 NC_009882.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 904905 groEL 5647719 groEL Rickettsia rickettsii str. 'Sheila Smith' chaperonin GroEL YP_001495063.1 903262 R 392021 CDS YP_001495064.1 157828822 5647720 complement(904933..905220) 1 NC_009882.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 905220 groES 5647720 groES Rickettsia rickettsii str. 'Sheila Smith' co-chaperonin GroES YP_001495064.1 904933 R 392021 CDS YP_001495065.1 157828823 5647721 complement(906002..906106) 1 NC_009882.1 hypothetical protein 906106 5647721 A1G_05340 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495065.1 906002 R 392021 CDS YP_001495066.1 157828824 5647722 complement(908437..909156) 1 NC_009882.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 909156 rph 5647722 rph Rickettsia rickettsii str. 'Sheila Smith' ribonuclease PH YP_001495066.1 908437 R 392021 CDS YP_001495067.1 157828825 5647723 909316..909915 1 NC_009882.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 909915 5647723 A1G_05370 Rickettsia rickettsii str. 'Sheila Smith' heat shock protein GrpE YP_001495067.1 909316 D 392021 CDS YP_001495068.1 157828826 5647724 910048..911103 1 NC_009882.1 COG0628 Predicted permease; hypothetical protein 911103 5647724 A1G_05375 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495068.1 910048 D 392021 CDS YP_001495069.1 157828827 5647725 911119..911787 1 NC_009882.1 COG0593 ATPase involved in DNA replication initiation; hypothetical protein 911787 5647725 A1G_05380 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495069.1 911119 D 392021 CDS YP_001495070.1 157828828 5647726 912259..912405 1 NC_009882.1 hypothetical protein 912405 5647726 A1G_05385 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495070.1 912259 D 392021 CDS YP_001495071.1 157828829 5647727 complement(913094..913327) 1 NC_009882.1 hypothetical protein 913327 5647727 A1G_05400 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495071.1 913094 R 392021 CDS YP_001495072.1 157828830 5648275 913569..913868 1 NC_009882.1 hypothetical protein 913868 5648275 A1G_05405 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495072.1 913569 D 392021 CDS YP_001495073.1 157828831 5648276 913840..914376 1 NC_009882.1 hypothetical protein 914376 5648276 A1G_05410 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495073.1 913840 D 392021 CDS YP_001495074.1 157828832 5648277 915501..915677 1 NC_009882.1 COG0477 Permeases of the major facilitator superfamily; MFS type sugar transporter 915677 5648277 A1G_05415 Rickettsia rickettsii str. 'Sheila Smith' MFS type sugar transporter YP_001495074.1 915501 D 392021 CDS YP_001495075.1 157828833 5648278 complement(916256..916375) 1 NC_009882.1 30S ribosomal protein S20 916375 rpsT 5648278 rpsT Rickettsia rickettsii str. 'Sheila Smith' 30S ribosomal protein S20 YP_001495075.1 916256 R 392021 CDS YP_001495076.1 157828834 5648280 complement(917642..917920) 1 NC_009882.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 917920 rpsT 5648280 rpsT Rickettsia rickettsii str. 'Sheila Smith' 30S ribosomal protein S20 YP_001495076.1 917642 R 392021 CDS YP_001495077.1 157828835 5648281 complement(917939..918349) 1 NC_009882.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 918349 rplQ 5648281 rplQ Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L17 YP_001495077.1 917939 R 392021 CDS YP_001495078.1 157828836 5648282 complement(918360..919382) 1 NC_009882.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 919382 5648282 A1G_05435 Rickettsia rickettsii str. 'Sheila Smith' DNA-directed RNA polymerase subunit alpha YP_001495078.1 918360 R 392021 CDS YP_001495079.1 157828837 5648283 complement(919401..919784) 1 NC_009882.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 919784 5648283 A1G_05440 Rickettsia rickettsii str. 'Sheila Smith' 30S ribosomal protein S11 YP_001495079.1 919401 R 392021 CDS YP_001495080.1 157828838 5648284 complement(919809..920186) 1 NC_009882.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 920186 rpsM 5648284 rpsM Rickettsia rickettsii str. 'Sheila Smith' 30S ribosomal protein S13 YP_001495080.1 919809 R 392021 CDS YP_001495081.1 157828839 5647985 complement(920245..920883) 1 NC_009882.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 920883 adk 5647985 adk Rickettsia rickettsii str. 'Sheila Smith' adenylate kinase YP_001495081.1 920245 R 392021 CDS YP_001495082.1 157828840 5647986 complement(920899..922200) 1 NC_009882.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 922200 secY 5647986 secY Rickettsia rickettsii str. 'Sheila Smith' preprotein translocase subunit SecY YP_001495082.1 920899 R 392021 CDS YP_001495083.1 157828841 5647987 complement(922204..922665) 1 NC_009882.1 late assembly protein; 50S ribosomal protein L15 922665 rplO 5647987 rplO Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L15 YP_001495083.1 922204 R 392021 CDS YP_001495084.1 157828842 5647988 complement(922679..922870) 1 NC_009882.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 922870 rpmD 5647988 rpmD Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L30 YP_001495084.1 922679 R 392021 CDS YP_001495085.1 157828843 5647989 complement(922894..923424) 1 NC_009882.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 923424 rpsE 5647989 rpsE Rickettsia rickettsii str. 'Sheila Smith' 30S ribosomal protein S5 YP_001495085.1 922894 R 392021 CDS YP_001495086.1 157828844 5647990 complement(923442..923789) 1 NC_009882.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 923789 rplR 5647990 rplR Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L18 YP_001495086.1 923442 R 392021 CDS YP_001495087.1 157828845 5647991 complement(923805..924338) 1 NC_009882.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 924338 rplF 5647991 rplF Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L6 YP_001495087.1 923805 R 392021 CDS YP_001495088.1 157828846 5647992 complement(924347..924745) 1 NC_009882.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 924745 rpsH 5647992 rpsH Rickettsia rickettsii str. 'Sheila Smith' 30S ribosomal protein S8 YP_001495088.1 924347 R 392021 CDS YP_001495089.1 157828847 5647993 complement(924765..925070) 1 NC_009882.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 925070 rpsN 5647993 rpsN Rickettsia rickettsii str. 'Sheila Smith' 30S ribosomal protein S14 YP_001495089.1 924765 R 392021 CDS YP_001495090.1 157828848 5647994 complement(925088..925627) 1 NC_009882.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 925627 rplE 5647994 rplE Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L5 YP_001495090.1 925088 R 392021 CDS YP_001495091.1 157828849 5647995 complement(925627..925956) 1 NC_009882.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 925956 rplX 5647995 rplX Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L24 YP_001495091.1 925627 R 392021 CDS YP_001495092.1 157828850 5647481 complement(925957..926325) 1 NC_009882.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 926325 rplN 5647481 rplN Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L14 YP_001495092.1 925957 R 392021 CDS YP_001495093.1 157828851 5647482 complement(926400..926633) 1 NC_009882.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 926633 rpsQ 5647482 rpsQ Rickettsia rickettsii str. 'Sheila Smith' 30S ribosomal protein S17 YP_001495093.1 926400 R 392021 CDS YP_001495094.1 157828852 5647483 complement(926635..926850) 1 NC_009882.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 926850 rpmC 5647483 rpmC Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L29 YP_001495094.1 926635 R 392021 CDS YP_001495095.1 157828853 5647484 complement(926843..927253) 1 NC_009882.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 927253 rplP 5647484 rplP Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L16 YP_001495095.1 926843 R 392021 CDS YP_001495096.1 157828854 5647485 complement(927268..927921) 1 NC_009882.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 927921 rpsC 5647485 rpsC Rickettsia rickettsii str. 'Sheila Smith' 30S ribosomal protein S3 YP_001495096.1 927268 R 392021 CDS YP_001495097.1 157828855 5647486 complement(927923..928282) 1 NC_009882.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 928282 rplV 5647486 rplV Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L22 YP_001495097.1 927923 R 392021 CDS YP_001495098.1 157828856 5647487 complement(928291..928569) 1 NC_009882.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 928569 rpsS 5647487 rpsS Rickettsia rickettsii str. 'Sheila Smith' 30S ribosomal protein S19 YP_001495098.1 928291 R 392021 CDS YP_001495099.1 157828857 5647488 complement(928594..929415) 1 NC_009882.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 929415 rplB 5647488 rplB Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L2 YP_001495099.1 928594 R 392021 CDS YP_001495100.1 157828858 5647489 complement(929416..929712) 1 NC_009882.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 929712 rplW 5647489 rplW Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L23 YP_001495100.1 929416 R 392021 CDS YP_001495101.1 157828859 5647490 complement(929709..930332) 1 NC_009882.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 930332 rplD 5647490 rplD Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L4 YP_001495101.1 929709 R 392021 CDS YP_001495102.1 157828860 5647491 complement(930443..931090) 1 NC_009882.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 931090 rplC 5647491 rplC Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L3 YP_001495102.1 930443 R 392021 CDS YP_001495103.1 157828861 5647954 complement(931091..931408) 1 NC_009882.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 931408 rpsJ 5647954 rpsJ Rickettsia rickettsii str. 'Sheila Smith' 30S ribosomal protein S10 YP_001495103.1 931091 R 392021 CDS YP_001495104.1 157828862 5647955 complement(931649..932833) 1 NC_009882.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 932833 5647955 A1G_05565 Rickettsia rickettsii str. 'Sheila Smith' elongation factor Tu YP_001495104.1 931649 R 392021 CDS YP_001495105.1 157828863 5647958 933407..934129 1 NC_009882.1 COG0566 rRNA methylases; tRNA/rRNA methyltransferase 934129 5647958 A1G_05570 Rickettsia rickettsii str. 'Sheila Smith' tRNA/rRNA methyltransferase YP_001495105.1 933407 D 392021 CDS YP_001495106.1 157828864 5647959 complement(934135..934287) 1 NC_009882.1 hypothetical protein 934287 5647959 A1G_05575 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495106.1 934135 R 392021 CDS YP_001495107.1 157828865 5647960 934240..934692 1 NC_009882.1 hypothetical protein 934692 5647960 A1G_05580 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495107.1 934240 D 392021 CDS YP_001495108.1 157828866 5647961 934689..936080 1 NC_009882.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 936080 fumC 5647961 fumC Rickettsia rickettsii str. 'Sheila Smith' fumarate hydratase YP_001495108.1 934689 D 392021 CDS YP_001495109.1 157828867 5647962 936177..936431 1 NC_009882.1 COG4118 Antitoxin of toxin-antitoxin stability system; hypothetical protein 936431 5647962 A1G_05590 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495109.1 936177 D 392021 CDS YP_001495110.1 157828868 5648545 936418..936741 1 NC_009882.1 hypothetical protein 936741 5648545 A1G_05595 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495110.1 936418 D 392021 CDS YP_001495111.1 157828869 5648546 936917..938275 1 NC_009882.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 938275 5648546 A1G_05600 Rickettsia rickettsii str. 'Sheila Smith' cell division protein FtsZ YP_001495111.1 936917 D 392021 CDS YP_001495112.1 157828870 5648547 938777..939199 1 NC_009882.1 hypothetical protein 939199 5648547 A1G_05605 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495112.1 938777 D 392021 CDS YP_001495113.1 157828871 5648548 939379..939735 1 NC_009882.1 COG4574 Serine protease inhibitor ecotin; ecotin 939735 5648548 A1G_05610 Rickettsia rickettsii str. 'Sheila Smith' ecotin YP_001495113.1 939379 D 392021 CDS YP_001495114.1 157828872 5648549 complement(939881..940453) 1 NC_009882.1 COG0694 Thioredoxin-like proteins and domains; hypothetical protein 940453 5648549 A1G_05615 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495114.1 939881 R 392021 CDS YP_001495115.1 157828873 5648550 complement(940801..941865) 1 NC_009882.1 COG0477 Permeases of the major facilitator superfamily; AmpG protein 941865 5648550 A1G_05620 Rickettsia rickettsii str. 'Sheila Smith' AmpG protein YP_001495115.1 940801 R 392021 CDS YP_001495116.1 157828874 5648551 complement(942217..943449) 1 NC_009882.1 COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase RhlE 943449 5648551 A1G_05625 Rickettsia rickettsii str. 'Sheila Smith' ATP-dependent RNA helicase RhlE YP_001495116.1 942217 R 392021 CDS YP_001495117.1 157828875 5648552 complement(943964..944176) 1 NC_009882.1 COG1278 Cold shock proteins; cold shock-like protein 944176 5648552 A1G_05630 Rickettsia rickettsii str. 'Sheila Smith' cold shock-like protein YP_001495117.1 943964 R 392021 CDS YP_001495118.1 157828876 5648554 complement(945574..946479) 1 NC_009882.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 946479 ksgA 5648554 ksgA Rickettsia rickettsii str. 'Sheila Smith' dimethyladenosine transferase YP_001495118.1 945574 R 392021 CDS YP_001495119.1 157828877 5648607 complement(946632..947519) 1 NC_009882.1 COG0760 Parvulin-like peptidyl-prolyl isomerase; hypothetical protein 947519 5648607 A1G_05640 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495119.1 946632 R 392021 CDS YP_001495120.1 157828878 5648608 complement(947671..949767) 1 NC_009882.1 COG1452 Organic solvent tolerance protein OstA; hypothetical protein 949767 5648608 A1G_05645 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495120.1 947671 R 392021 CDS YP_001495121.1 157828879 5648609 950042..951415 1 NC_009882.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 951415 xseA 5648609 xseA Rickettsia rickettsii str. 'Sheila Smith' exodeoxyribonuclease VII large subunit YP_001495121.1 950042 D 392021 CDS YP_001495122.1 157828880 5648610 951876..952079 1 NC_009882.1 hypothetical protein 952079 5648610 A1G_05665 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495122.1 951876 D 392021 CDS YP_001495123.1 157828881 5648611 952076..952858 1 NC_009882.1 COG0708 Exonuclease III; exodeoxyribonuclease III 952858 5648611 A1G_05670 Rickettsia rickettsii str. 'Sheila Smith' exodeoxyribonuclease III YP_001495123.1 952076 D 392021 CDS YP_001495124.1 157828882 5648612 952946..953212 1 NC_009882.1 COG4095 Uncharacterized conserved protein; hypothetical protein 953212 5648612 A1G_05675 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495124.1 952946 D 392021 CDS YP_001495125.1 157828883 5648613 complement(953029..953199) 1 NC_009882.1 GTP-binding protein EngA 953199 engA 5648613 engA Rickettsia rickettsii str. 'Sheila Smith' GTP-binding protein EngA YP_001495125.1 953029 R 392021 CDS YP_001495126.1 157828884 5648614 953216..954559 1 NC_009882.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 954559 engA 5648614 engA Rickettsia rickettsii str. 'Sheila Smith' GTP-binding protein EngA YP_001495126.1 953216 D 392021 CDS YP_001495127.1 157828885 5648615 complement(954621..954923) 1 NC_009882.1 COG1373 Predicted ATPase (AAA+ superfamily); hypothetical protein 954923 5648615 A1G_05690 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495127.1 954621 R 392021 CDS YP_001495128.1 157828886 5648616 complement(957007..957225) 1 NC_009882.1 hypothetical protein 957225 5648616 A1G_05715 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495128.1 957007 R 392021 CDS YP_001495129.1 157828887 5648617 complement(957411..957632) 1 NC_009882.1 hypothetical protein 957632 5648617 A1G_05720 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495129.1 957411 R 392021 CDS YP_001495130.1 157828888 5647622 complement(957629..959065) 1 NC_009882.1 COG0661 Predicted unusual protein kinase; ubiquinone biosynthesis protein 959065 5647622 A1G_05725 Rickettsia rickettsii str. 'Sheila Smith' ubiquinone biosynthesis protein YP_001495130.1 957629 R 392021 CDS YP_001495131.1 157828889 5647623 complement(959062..959241) 1 NC_009882.1 recombination protein F 959241 5647623 A1G_05730 Rickettsia rickettsii str. 'Sheila Smith' recombination protein F YP_001495131.1 959062 R 392021 CDS YP_001495132.1 157828890 5647624 complement(959213..959959) 1 NC_009882.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 959959 ubiE 5647624 ubiE Rickettsia rickettsii str. 'Sheila Smith' ubiquinone/menaquinone biosynthesis methyltransferase YP_001495132.1 959213 R 392021 CDS YP_001495133.1 157828891 5647625 959988..960809 1 NC_009882.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 960809 5647625 A1G_05740 Rickettsia rickettsii str. 'Sheila Smith' formamidopyrimidine-DNA glycosylase YP_001495133.1 959988 D 392021 CDS YP_001495134.1 157828892 5647626 960859..961575 1 NC_009882.1 COG0836 Mannose-1-phosphate guanylyltransferase; hypothetical protein 961575 5647626 A1G_05745 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495134.1 960859 D 392021 CDS YP_001495135.1 157828893 5647627 962108..962284 1 NC_009882.1 hypothetical protein 962284 5647627 A1G_05760 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495135.1 962108 D 392021 CDS YP_001495136.1 157828894 5647628 962756..963004 1 NC_009882.1 hypothetical protein 963004 5647628 A1G_05765 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495136.1 962756 D 392021 CDS YP_001495137.1 157828895 5647629 963450..963581 1 NC_009882.1 hypothetical protein 963581 5647629 A1G_05775 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495137.1 963450 D 392021 CDS YP_001495138.1 157828896 5647630 complement(964671..964826) 1 NC_009882.1 COG2958 Uncharacterized protein conserved in bacteria; hypothetical protein 964826 5647630 A1G_05790 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495138.1 964671 R 392021 CDS YP_001495139.1 157828897 5647631 complement(965076..965162) 1 NC_009882.1 hypothetical protein 965162 5647631 A1G_05795 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495139.1 965076 R 392021 CDS YP_001495140.1 157828898 5647632 complement(965461..965607) 1 NC_009882.1 COG2958 Uncharacterized protein conserved in bacteria; hypothetical protein 965607 5647632 A1G_05800 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495140.1 965461 R 392021 CDS YP_001495141.1 157828899 5647422 complement(965649..966662) 1 NC_009882.1 COG0084 Mg-dependent DNase; hypothetical protein 966662 5647422 A1G_05805 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495141.1 965649 R 392021 CDS YP_001495142.1 157828900 5647423 complement(966715..968241) 1 NC_009882.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 968241 5647423 A1G_05810 Rickettsia rickettsii str. 'Sheila Smith' methionyl-tRNA synthetase YP_001495142.1 966715 R 392021 CDS YP_001495143.1 157828901 5647424 complement(968238..968849) 1 NC_009882.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 968849 tmk 5647424 tmk Rickettsia rickettsii str. 'Sheila Smith' thymidylate kinase YP_001495143.1 968238 R 392021 CDS YP_001495144.1 157828902 5647425 969108..970475 1 NC_009882.1 COG0477 Permeases of the major facilitator superfamily; proline/betaine transporter 970475 5647425 A1G_05820 Rickettsia rickettsii str. 'Sheila Smith' proline/betaine transporter YP_001495144.1 969108 D 392021 CDS YP_001495145.1 157828903 5647426 complement(970626..971534) 1 NC_009882.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; 4-hydroxybenzoate polyprenyltransferase 971534 ubiA 5647426 ubiA Rickettsia rickettsii str. 'Sheila Smith' 4-hydroxybenzoate polyprenyltransferase YP_001495145.1 970626 R 392021 CDS YP_001495146.1 157828904 5647427 971595..971699 1 NC_009882.1 hypothetical protein 971699 5647427 A1G_05830 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495146.1 971595 D 392021 CDS YP_001495147.1 157828905 5647428 972604..975042 1 NC_009882.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 975042 valS 5647428 valS Rickettsia rickettsii str. 'Sheila Smith' valyl-tRNA synthetase YP_001495147.1 972604 D 392021 CDS YP_001495148.1 157828906 5647429 975011..975763 1 NC_009882.1 COG3475 LPS biosynthesis protein; hypothetical protein 975763 5647429 A1G_05855 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495148.1 975011 D 392021 CDS YP_001495149.1 157828907 5647430 975829..976629 1 NC_009882.1 COG3475 LPS biosynthesis protein; hypothetical protein 976629 5647430 A1G_05860 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495149.1 975829 D 392021 CDS YP_001495150.1 157828908 5647431 complement(976722..977318) 1 NC_009882.1 COG1373 Predicted ATPase (AAA+ superfamily); ATPase 977318 5647431 A1G_05865 Rickettsia rickettsii str. 'Sheila Smith' ATPase YP_001495150.1 976722 R 392021 CDS YP_001495151.1 157828909 5647432 977768..979054 1 NC_009882.1 COG1322 Uncharacterized protein conserved in bacteria; hypothetical protein 979054 5647432 A1G_05870 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495151.1 977768 D 392021 CDS YP_001495152.1 157828910 5647611 979199..979489 1 NC_009882.1 hypothetical protein 979489 5647611 A1G_05875 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495152.1 979199 D 392021 CDS YP_001495153.1 157828911 5647612 982741..982953 1 NC_009882.1 hypothetical protein 982953 5647612 A1G_05905 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495153.1 982741 D 392021 CDS YP_001495154.1 157828912 5647613 983281..983508 1 NC_009882.1 hypothetical protein 983508 5647613 A1G_05910 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495154.1 983281 D 392021 CDS YP_001495155.1 157828913 5647614 983569..983841 1 NC_009882.1 putative oxidoreductase protein 983841 5647614 A1G_05915 Rickettsia rickettsii str. 'Sheila Smith' putative oxidoreductase protein YP_001495155.1 983569 D 392021 CDS YP_001495156.1 157828914 5647615 983971..984123 1 NC_009882.1 hypothetical protein 984123 5647615 A1G_05920 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495156.1 983971 D 392021 CDS YP_001495157.1 157828915 5647616 complement(984621..985898) 1 NC_009882.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 985898 clpX 5647616 clpX Rickettsia rickettsii str. 'Sheila Smith' ATP-dependent protease ATP-binding subunit ClpX YP_001495157.1 984621 R 392021 CDS YP_001495158.1 157828916 5647617 complement(985935..986486) 1 NC_009882.1 COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; ribosomal-protein-alanine acetyltransferase 986486 5647617 A1G_05930 Rickettsia rickettsii str. 'Sheila Smith' ribosomal-protein-alanine acetyltransferase YP_001495158.1 985935 R 392021 CDS YP_001495159.1 157828917 5647618 complement(986650..987336) 1 NC_009882.1 COG0603 Predicted PP-loop superfamily ATPase; trans-regulatory protein ExsB 987336 5647618 A1G_05935 Rickettsia rickettsii str. 'Sheila Smith' trans-regulatory protein ExsB YP_001495159.1 986650 R 392021 CDS YP_001495160.1 157828918 5647619 complement(987333..987677) 1 NC_009882.1 COG1598 Uncharacterized conserved protein; hypothetical protein 987677 5647619 A1G_05940 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495160.1 987333 R 392021 CDS YP_001495161.1 157828919 5647620 complement(987709..987903) 1 NC_009882.1 hypothetical protein 987903 5647620 A1G_05945 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495161.1 987709 R 392021 CDS YP_001495162.1 157828920 5648358 988361..990022 1 NC_009882.1 COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug resistance protein 990022 5648358 A1G_05950 Rickettsia rickettsii str. 'Sheila Smith' multidrug resistance protein YP_001495162.1 988361 D 392021 CDS YP_001495163.1 157828921 5648359 990325..990573 1 NC_009882.1 hypothetical protein 990573 5648359 A1G_05955 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495163.1 990325 D 392021 CDS YP_001495164.1 157828922 5648360 991314..992378 1 NC_009882.1 COG0477 Permeases of the major facilitator superfamily; bicyclomycin resistance protein 992378 5648360 A1G_05960 Rickettsia rickettsii str. 'Sheila Smith' bicyclomycin resistance protein YP_001495164.1 991314 D 392021 CDS YP_001495165.1 157828923 5648361 992452..993807 1 NC_009882.1 COG4591 ABC-type transport system, involved in lipoprotein release, permease component; hypothetical protein 993807 5648361 A1G_05965 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495165.1 992452 D 392021 CDS YP_001495166.1 157828924 5648362 993800..994465 1 NC_009882.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component; ABC transporter ATP-binding protein 994465 5648362 A1G_05970 Rickettsia rickettsii str. 'Sheila Smith' ABC transporter ATP-binding protein YP_001495166.1 993800 D 392021 CDS YP_001495167.1 157828925 5648363 994684..996585 1 NC_009882.1 hypothetical protein 996585 5648363 A1G_05975 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495167.1 994684 D 392021 CDS YP_001495168.1 157828926 5648364 996660..997934 1 NC_009882.1 COG4536 Putative Mg2+ and Co2+ transporter CorB; hypothetical protein 997934 5648364 A1G_05980 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495168.1 996660 D 392021 CDS YP_001495169.1 157828927 5648365 998257..999915 1 NC_009882.1 COG1138 Cytochrome c biogenesis factor; cytochrome c-type biogenesis protein ccmF 999915 5648365 A1G_05985 Rickettsia rickettsii str. 'Sheila Smith' cytochrome c-type biogenesis protein ccmF YP_001495169.1 998257 D 392021 CDS YP_001495170.1 157828928 5648366 complement(1000018..1000215) 1 NC_009882.1 hypothetical protein 1000215 5648366 A1G_05990 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495170.1 1000018 R 392021 CDS YP_001495171.1 157828929 5648367 complement(1000289..1000396) 1 NC_009882.1 hypothetical protein 1000396 5648367 A1G_05995 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495171.1 1000289 R 392021 CDS YP_001495172.1 157828930 5648347 complement(1000789..1000884) 1 NC_009882.1 hypothetical protein 1000884 5648347 A1G_06010 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495172.1 1000789 R 392021 CDS YP_001495173.1 157828931 5648348 complement(1001044..1001184) 1 NC_009882.1 hypothetical protein 1001184 5648348 A1G_06015 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495173.1 1001044 R 392021 CDS YP_001495174.1 157828932 5648349 complement(1002500..1007464) 1 NC_009882.1 COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain; outer membrane protein B (cell surface antigen sca5) 1007464 5648349 A1G_06030 Rickettsia rickettsii str. 'Sheila Smith' outer membrane protein B (cell surface antigen sca5) YP_001495174.1 1002500 R 392021 CDS YP_001495175.1 157828933 5648350 complement(1007857..1008462) 1 NC_009882.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein 1008462 5648350 A1G_06035 Rickettsia rickettsii str. 'Sheila Smith' guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein YP_001495175.1 1007857 R 392021 CDS YP_001495176.1 157828934 5648351 complement(1008720..1009664) 1 NC_009882.1 COG1472 Beta-glucosidase-related glycosidases; hypothetical protein 1009664 5648351 A1G_06040 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495176.1 1008720 R 392021 CDS YP_001495177.1 157828935 5648352 complement(1009702..1009998) 1 NC_009882.1 COG0789 Predicted transcriptional regulators; hypothetical protein 1009998 5648352 A1G_06045 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495177.1 1009702 R 392021 CDS YP_001495178.1 157828936 5648353 complement(1010214..1010501) 1 NC_009882.1 COG0776 Bacterial nucleoid DNA-binding protein; integration host factor alpha-subunit 1010501 5648353 A1G_06050 Rickettsia rickettsii str. 'Sheila Smith' integration host factor alpha-subunit YP_001495178.1 1010214 R 392021 CDS YP_001495179.1 157828937 5648354 complement(1010648..1011115) 1 NC_009882.1 COG0141 Histidinol dehydrogenase; hypothetical protein 1011115 5648354 A1G_06055 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495179.1 1010648 R 392021 CDS YP_001495180.1 157828938 5648355 1011598..1012068 1 NC_009882.1 COG1225 Peroxiredoxin; bacterioferritin comigratory protein 1012068 5648355 A1G_06060 Rickettsia rickettsii str. 'Sheila Smith' bacterioferritin comigratory protein YP_001495180.1 1011598 D 392021 CDS YP_001495181.1 157828939 5648356 complement(1012188..1013060) 1 NC_009882.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 1013060 5648356 A1G_06065 Rickettsia rickettsii str. 'Sheila Smith' lipid A biosynthesis lauroyl acyltransferase YP_001495181.1 1012188 R 392021 CDS YP_001495182.1 157828940 5648357 complement(1013035..1014000) 1 NC_009882.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1014000 lpxK 5648357 lpxK Rickettsia rickettsii str. 'Sheila Smith' tetraacyldisaccharide 4'-kinase YP_001495182.1 1013035 R 392021 CDS YP_001495183.1 157828941 5648717 complement(1014004..1014858) 1 NC_009882.1 COG0739 Membrane proteins related to metalloendopeptidases; hypothetical protein 1014858 5648717 A1G_06075 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495183.1 1014004 R 392021 CDS YP_001495184.1 157828942 5648718 complement(1014858..1015646) 1 NC_009882.1 COG2961 Protein involved in catabolism of external DNA; hypothetical protein 1015646 5648718 A1G_06080 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495184.1 1014858 R 392021 CDS YP_001495185.1 157828943 5648719 complement(1016354..1018423) 1 NC_009882.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 1018423 ligA 5648719 ligA Rickettsia rickettsii str. 'Sheila Smith' NAD-dependent DNA ligase LigA YP_001495185.1 1016354 R 392021 CDS YP_001495186.1 157828944 5648720 complement(1018455..1018562) 1 NC_009882.1 queuine tRNA-ribosyltransferase 1018562 tgt 5648720 tgt Rickettsia rickettsii str. 'Sheila Smith' queuine tRNA-ribosyltransferase YP_001495186.1 1018455 R 392021 CDS YP_001495187.1 157828945 5648721 complement(1018710..1019795) 1 NC_009882.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1019795 tgt 5648721 tgt Rickettsia rickettsii str. 'Sheila Smith' queuine tRNA-ribosyltransferase YP_001495187.1 1018710 R 392021 CDS YP_001495188.1 157828946 5648722 1020437..1020736 1 NC_009882.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; hypothetical protein 1020736 5648722 A1G_06100 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495188.1 1020437 D 392021 CDS YP_001495189.1 157828947 5648723 1022046..1022291 1 NC_009882.1 hypothetical protein 1022291 5648723 A1G_06105 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495189.1 1022046 D 392021 CDS YP_001495190.1 157828948 5648724 complement(1023467..1023919) 1 NC_009882.1 hypothetical protein 1023919 5648724 A1G_06120 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495190.1 1023467 R 392021 CDS YP_001495191.1 157828949 5648725 complement(1023928..1024068) 1 NC_009882.1 hypothetical protein 1024068 5648725 A1G_06125 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495191.1 1023928 R 392021 CDS YP_001495192.1 157828950 5648726 complement(1024099..1024212) 1 NC_009882.1 hypothetical protein 1024212 5648726 A1G_06130 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495192.1 1024099 R 392021 CDS YP_001495193.1 157828951 5648727 complement(1024376..1024825) 1 NC_009882.1 COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component; ABC transporter substrate binding protein 1024825 5648727 A1G_06135 Rickettsia rickettsii str. 'Sheila Smith' ABC transporter substrate binding protein YP_001495193.1 1024376 R 392021 CDS YP_001495194.1 157828952 5647674 complement(1024846..1025145) 1 NC_009882.1 COG3761 NADH:ubiquinone oxidoreductase 17.2 kD subunit; hypothetical protein 1025145 5647674 A1G_06140 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495194.1 1024846 R 392021 CDS YP_001495195.1 157828953 5647675 complement(1025133..1025600) 1 NC_009882.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 1025600 rnhA 5647675 rnhA Rickettsia rickettsii str. 'Sheila Smith' ribonuclease H YP_001495195.1 1025133 R 392021 CDS YP_001495196.1 157828954 5647676 complement(1025600..1026073) 1 NC_009882.1 COG3814 Uncharacterized protein conserved in bacteria; hypothetical protein 1026073 5647676 A1G_06150 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495196.1 1025600 R 392021 CDS YP_001495197.1 157828955 5647677 1026853..1027665 1 NC_009882.1 COG3494 Uncharacterized protein conserved in bacteria; hypothetical protein 1027665 5647677 A1G_06155 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495197.1 1026853 D 392021 CDS YP_001495198.1 157828956 5647678 1027659..1028234 1 NC_009882.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 1028234 coaE 5647678 coaE Rickettsia rickettsii str. 'Sheila Smith' dephospho-CoA kinase YP_001495198.1 1027659 D 392021 CDS YP_001495199.1 157828957 5647679 1028222..1028911 1 NC_009882.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 1028911 5647679 A1G_06165 Rickettsia rickettsii str. 'Sheila Smith' DNA polymerase III subunit epsilon YP_001495199.1 1028222 D 392021 CDS YP_001495200.1 157828958 5647680 1029038..1029760 1 NC_009882.1 COG3346 Uncharacterized conserved protein; surfeit locus protein 1 1029760 5647680 A1G_06170 Rickettsia rickettsii str. 'Sheila Smith' surfeit locus protein 1 YP_001495200.1 1029038 D 392021 CDS YP_001495201.1 157828959 5647681 1029816..1032284 1 NC_009882.1 COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); ATP-dependent helicase 1032284 5647681 A1G_06175 Rickettsia rickettsii str. 'Sheila Smith' ATP-dependent helicase YP_001495201.1 1029816 D 392021 CDS YP_001495202.1 157828960 5647682 complement(1032401..1032577) 1 NC_009882.1 hypothetical protein 1032577 5647682 A1G_06180 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495202.1 1032401 R 392021 CDS YP_001495203.1 157828961 5647683 complement(1033019..1033333) 1 NC_009882.1 hypothetical protein 1033333 5647683 A1G_06185 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495203.1 1033019 R 392021 CDS YP_001495204.1 157828962 5647684 1033543..1034487 1 NC_009882.1 COG0331 (acyl-carrier-protein) S-malonyltransferase; acyl-carrier-protein S-malonyltransferase 1034487 5647684 A1G_06190 Rickettsia rickettsii str. 'Sheila Smith' acyl-carrier-protein S-malonyltransferase YP_001495204.1 1033543 D 392021 CDS YP_001495205.1 157828963 5648193 1034597..1034794 1 NC_009882.1 hypothetical protein 1034794 5648193 A1G_06195 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495205.1 1034597 D 392021 CDS YP_001495206.1 157828964 5648194 1034830..1035138 1 NC_009882.1 hypothetical protein 1035138 5648194 A1G_06200 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495206.1 1034830 D 392021 CDS YP_001495207.1 157828965 5648195 1035348..1035662 1 NC_009882.1 hypothetical protein 1035662 5648195 A1G_06205 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495207.1 1035348 D 392021 CDS YP_001495208.1 157828966 5648197 complement(1036483..1036632) 1 NC_009882.1 hypothetical protein 1036632 5648197 A1G_06210 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495208.1 1036483 R 392021 CDS YP_001495209.1 157828967 5648198 complement(1037616..1037912) 1 NC_009882.1 hypothetical protein 1037912 5648198 A1G_06230 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495209.1 1037616 R 392021 CDS YP_001495210.1 157828968 5648199 complement(1038239..1038388) 1 NC_009882.1 hypothetical protein 1038388 5648199 A1G_06235 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495210.1 1038239 R 392021 CDS YP_001495211.1 157828969 5648200 complement(1039190..1039315) 1 NC_009882.1 hypothetical protein 1039315 5648200 A1G_06250 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495211.1 1039190 R 392021 CDS YP_001495212.1 157828970 5648201 complement(1039341..1039538) 1 NC_009882.1 hypothetical protein 1039538 5648201 A1G_06255 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495212.1 1039341 R 392021 CDS YP_001495213.1 157828971 5648202 complement(1039634..1040317) 1 NC_009882.1 COG3243 Poly(3-hydroxyalkanoate) synthetase; Poly-beta-hydroxybutyrate polymerase 1040317 5648202 A1G_06260 Rickettsia rickettsii str. 'Sheila Smith' Poly-beta-hydroxybutyrate polymerase YP_001495213.1 1039634 R 392021 CDS YP_001495214.1 157828972 5648473 1040765..1042162 1 NC_009882.1 COG3202 ATP/ADP translocase; ADP,ATP carrier protein 1042162 5648473 A1G_06265 Rickettsia rickettsii str. 'Sheila Smith' ADP,ATP carrier protein YP_001495214.1 1040765 D 392021 CDS YP_001495215.1 157828973 5648474 complement(1042473..1043027) 1 NC_009882.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; (di)nucleoside polyphosphate hydrolase 1043027 5648474 A1G_06270 Rickettsia rickettsii str. 'Sheila Smith' (di)nucleoside polyphosphate hydrolase YP_001495215.1 1042473 R 392021 CDS YP_001495216.1 157828974 5648475 1043231..1043452 1 NC_009882.1 COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance; hypothetical protein 1043452 5648475 A1G_06275 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495216.1 1043231 D 392021 CDS YP_001495217.1 157828975 5648476 complement(1043505..1044404) 1 NC_009882.1 COG1253 Hemolysins and related proteins containing CBS domains; hemolysin C 1044404 5648476 A1G_06280 Rickettsia rickettsii str. 'Sheila Smith' hemolysin C YP_001495217.1 1043505 R 392021 CDS YP_001495218.1 157828976 5648477 complement(1044421..1044924) 1 NC_009882.1 COG0319 Predicted metal-dependent hydrolase; putative metalloprotease 1044924 5648477 A1G_06285 Rickettsia rickettsii str. 'Sheila Smith' putative metalloprotease YP_001495218.1 1044421 R 392021 CDS YP_001495219.1 157828977 5648478 complement(1044951..1045088) 1 NC_009882.1 lipoyl synthase 1045088 5648478 A1G_06290 Rickettsia rickettsii str. 'Sheila Smith' lipoyl synthase YP_001495219.1 1044951 R 392021 CDS YP_001495220.1 157828978 5648479 complement(1045237..1045320) 1 NC_009882.1 hypothetical protein 1045320 5648479 A1G_06295 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495220.1 1045237 R 392021 CDS YP_001495221.1 157828979 5648480 complement(1045602..1046492) 1 NC_009882.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 1046492 5648480 A1G_06300 Rickettsia rickettsii str. 'Sheila Smith' lipoyl synthase YP_001495221.1 1045602 R 392021 CDS YP_001495222.1 157828980 5648481 complement(1046485..1047747) 1 NC_009882.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1047747 glyA 5648481 glyA Rickettsia rickettsii str. 'Sheila Smith' serine hydroxymethyltransferase YP_001495222.1 1046485 R 392021 CDS YP_001495223.1 157828981 5648482 complement(1047862..1048512) 1 NC_009882.1 COG0400 Predicted esterase; hypothetical protein 1048512 5648482 A1G_06310 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495223.1 1047862 R 392021 CDS YP_001495224.1 157828982 5648483 complement(1048668..1048991) 1 NC_009882.1 COG0278 Glutaredoxin-related protein; glutaredoxin-like protein grla 1048991 5648483 A1G_06315 Rickettsia rickettsii str. 'Sheila Smith' glutaredoxin-like protein grla YP_001495224.1 1048668 R 392021 CDS YP_001495225.1 157828983 5648389 1049041..1049673 1 NC_009882.1 COG0177 Predicted EndoIII-related endonuclease; endonuclease III 1049673 5648389 A1G_06320 Rickettsia rickettsii str. 'Sheila Smith' endonuclease III YP_001495225.1 1049041 D 392021 CDS YP_001495226.1 157828984 5648390 complement(1049690..1049854) 1 NC_009882.1 hypothetical protein 1049854 5648390 A1G_06325 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495226.1 1049690 R 392021 CDS YP_001495227.1 157828985 5648391 complement(1049916..1050287) 1 NC_009882.1 hypothetical protein 1050287 5648391 A1G_06330 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495227.1 1049916 R 392021 CDS YP_001495228.1 157828986 5648392 complement(1050275..1050466) 1 NC_009882.1 hypothetical protein 1050466 5648392 A1G_06335 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495228.1 1050275 R 392021 CDS YP_001495229.1 157828987 5648393 complement(1050618..1050905) 1 NC_009882.1 hypothetical protein 1050905 5648393 A1G_06340 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495229.1 1050618 R 392021 CDS YP_001495230.1 157828988 5648394 complement(1050964..1051056) 1 NC_009882.1 hypothetical protein 1051056 5648394 A1G_06345 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495230.1 1050964 R 392021 CDS YP_001495231.1 157828989 5648395 1051294..1051470 1 NC_009882.1 COG5510 Predicted small secreted protein; hypothetical protein 1051470 5648395 A1G_06350 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495231.1 1051294 D 392021 CDS YP_001495232.1 157828990 5648396 complement(1051542..1052108) 1 NC_009882.1 hypothetical protein 1052108 5648396 A1G_06355 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495232.1 1051542 R 392021 CDS YP_001495233.1 157828991 5648397 complement(1052192..1052356) 1 NC_009882.1 hypothetical protein 1052356 5648397 A1G_06360 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495233.1 1052192 R 392021 CDS YP_001495234.1 157828992 5648398 complement(1052364..1052429) 1 NC_009882.1 hypothetical protein 1052429 5648398 A1G_06365 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495234.1 1052364 R 392021 CDS YP_001495235.1 157828993 5648399 complement(1052505..1053350) 1 NC_009882.1 COG0313 Predicted methyltransferases; hypothetical protein 1053350 5648399 A1G_06370 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495235.1 1052505 R 392021 CDS YP_001495236.1 157828994 5647800 1053375..1054493 1 NC_009882.1 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component; hypothetical protein 1054493 5647800 A1G_06375 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495236.1 1053375 D 392021 CDS YP_001495237.1 157828995 5647801 complement(1054654..1054815) 1 NC_009882.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 1054815 tatA 5647801 tatA Rickettsia rickettsii str. 'Sheila Smith' twin arginine translocase protein A YP_001495237.1 1054654 R 392021 CDS YP_001495238.1 157828996 5647802 1054896..1055495 1 NC_009882.1 COG1267 Phosphatidylglycerophosphatase A and related proteins; phosphatidylglycerophosphatase A 1055495 5647802 A1G_06385 Rickettsia rickettsii str. 'Sheila Smith' phosphatidylglycerophosphatase A YP_001495238.1 1054896 D 392021 CDS YP_001495239.1 157828997 5647803 1055584..1055901 1 NC_009882.1 COG0261 Ribosomal protein L21; 50S ribosomal protein L21 1055901 rplU 5647803 rplU Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L21 YP_001495239.1 1055584 D 392021 CDS YP_001495240.1 157828998 5647804 1055926..1056186 1 NC_009882.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1056186 rpmA 5647804 rpmA Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L27 YP_001495240.1 1055926 D 392021 CDS YP_001495241.1 157828999 5647805 1056470..1057675 1 NC_009882.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1057675 5647805 A1G_06400 Rickettsia rickettsii str. 'Sheila Smith' aspartate kinase YP_001495241.1 1056470 D 392021 CDS YP_001495242.1 157829000 5647806 1057958..1058452 1 NC_009882.1 COG1396 Predicted transcriptional regulators; hypothetical protein 1058452 5647806 A1G_06405 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495242.1 1057958 D 392021 CDS YP_001495243.1 157829001 5647807 1058461..1058772 1 NC_009882.1 hypothetical protein 1058772 5647807 A1G_06410 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495243.1 1058461 D 392021 CDS YP_001495244.1 157829002 5647808 1058857..1059108 1 NC_009882.1 COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold; hypothetical protein 1059108 5647808 A1G_06415 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495244.1 1058857 D 392021 CDS YP_001495245.1 157829003 5647809 1059207..1059329 1 NC_009882.1 hypothetical protein 1059329 5647809 A1G_06420 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495245.1 1059207 D 392021 CDS YP_001495246.1 157829004 5647810 1059427..1059510 1 NC_009882.1 hypothetical protein 1059510 5647810 A1G_06425 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495246.1 1059427 D 392021 CDS YP_001495247.1 157829005 5647589 complement(1059643..1060230) 1 NC_009882.1 hypothetical protein 1060230 5647589 A1G_06430 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495247.1 1059643 R 392021 CDS YP_001495248.1 157829006 5647590 complement(1060332..1061573) 1 NC_009882.1 COG0477 Permeases of the major facilitator superfamily; proline/betaine transporter 1061573 5647590 A1G_06435 Rickettsia rickettsii str. 'Sheila Smith' proline/betaine transporter YP_001495248.1 1060332 R 392021 CDS YP_001495249.1 157829007 5647591 complement(1061801..1061923) 1 NC_009882.1 hypothetical protein 1061923 5647591 A1G_06440 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495249.1 1061801 R 392021 CDS YP_001495250.1 157829008 5647592 complement(1061901..1062218) 1 NC_009882.1 COG3027 Uncharacterized protein conserved in bacteria; hypothetical protein 1062218 5647592 A1G_06445 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495250.1 1061901 R 392021 CDS YP_001495251.1 157829009 5647593 complement(1062221..1062568) 1 NC_009882.1 hypothetical protein 1062568 5647593 A1G_06450 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495251.1 1062221 R 392021 CDS YP_001495252.1 157829010 5647594 complement(1062575..1062928) 1 NC_009882.1 COG1426 Uncharacterized protein conserved in bacteria; hypothetical protein 1062928 5647594 A1G_06455 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495252.1 1062575 R 392021 CDS YP_001495253.1 157829011 5647595 complement(1062932..1067686) 1 NC_009882.1 COG2902 NAD-specific glutamate dehydrogenase; hypothetical protein 1067686 5647595 A1G_06460 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495253.1 1062932 R 392021 CDS YP_001495254.1 157829012 5647596 1067768..1069105 1 NC_009882.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1069105 trmE 5647596 trmE Rickettsia rickettsii str. 'Sheila Smith' tRNA modification GTPase TrmE YP_001495254.1 1067768 D 392021 CDS YP_001495255.1 157829013 5647597 1069498..1070799 1 NC_009882.1 hypothetical protein 1070799 5647597 A1G_06470 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495255.1 1069498 D 392021 CDS YP_001495256.1 157829014 5647598 complement(1071433..1071672) 1 NC_009882.1 hypothetical protein 1071672 5647598 A1G_06475 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495256.1 1071433 R 392021 CDS YP_001495257.1 157829015 5647599 complement(1071686..1071820) 1 NC_009882.1 hypothetical protein 1071820 5647599 A1G_06480 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495257.1 1071686 R 392021 CDS YP_001495258.1 157829016 5647411 complement(1072290..1072517) 1 NC_009882.1 hypothetical protein 1072517 5647411 A1G_06485 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495258.1 1072290 R 392021 CDS YP_001495259.1 157829017 5647412 1073208..1074296 1 NC_009882.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1074296 recA 5647412 recA Rickettsia rickettsii str. 'Sheila Smith' recombinase A YP_001495259.1 1073208 D 392021 CDS YP_001495260.1 157829018 5647413 1074289..1075014 1 NC_009882.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1075014 fabG 5647413 fabG Rickettsia rickettsii str. 'Sheila Smith' 3-ketoacyl-ACP reductase YP_001495260.1 1074289 D 392021 CDS YP_001495261.1 157829019 5647414 complement(1074975..1075160) 1 NC_009882.1 hypothetical protein 1075160 5647414 A1G_06500 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495261.1 1074975 R 392021 CDS YP_001495262.1 157829020 5647415 1075193..1075438 1 NC_009882.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1075438 acpP 5647415 acpP Rickettsia rickettsii str. 'Sheila Smith' acyl carrier protein YP_001495262.1 1075193 D 392021 CDS YP_001495263.1 157829021 5647416 1075472..1076758 1 NC_009882.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1076758 5647416 A1G_06510 Rickettsia rickettsii str. 'Sheila Smith' 3-oxoacyl-(acyl carrier protein) synthase II YP_001495263.1 1075472 D 392021 CDS YP_001495264.1 157829022 5647417 1077040..1078821 1 NC_009882.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein 1078821 5647417 A1G_06515 Rickettsia rickettsii str. 'Sheila Smith' ABC transporter ATP-binding protein YP_001495264.1 1077040 D 392021 CDS YP_001495265.1 157829023 5647418 1078898..1079968 1 NC_009882.1 COG1196 Chromosome segregation ATPases; hypothetical protein 1079968 5647418 A1G_06520 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495265.1 1078898 D 392021 CDS YP_001495266.1 157829024 5647419 1079986..1080216 1 NC_009882.1 hypothetical protein 1080216 5647419 A1G_06525 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495266.1 1079986 D 392021 CDS YP_001495267.1 157829025 5647420 complement(1080244..1081398) 1 NC_009882.1 COG1373 Predicted ATPase (AAA+ superfamily); ATPase 1081398 5647420 A1G_06530 Rickettsia rickettsii str. 'Sheila Smith' ATPase YP_001495267.1 1080244 R 392021 CDS YP_001495268.1 157829026 5647421 complement(1081468..1082157) 1 NC_009882.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 1082157 gmk 5647421 gmk Rickettsia rickettsii str. 'Sheila Smith' guanylate kinase YP_001495268.1 1081468 R 392021 CDS YP_001495269.1 157829027 5648503 complement(1082298..1082534) 1 NC_009882.1 COG1396 Predicted transcriptional regulators; hypothetical protein 1082534 5648503 A1G_06540 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495269.1 1082298 R 392021 CDS YP_001495270.1 157829028 5648504 complement(1082886..1083725) 1 NC_009882.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 1083725 5648504 A1G_06545 Rickettsia rickettsii str. 'Sheila Smith' rod shape-determining protein MreC YP_001495270.1 1082886 R 392021 CDS YP_001495271.1 157829029 5648505 complement(1083728..1084768) 1 NC_009882.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1084768 5648505 A1G_06550 Rickettsia rickettsii str. 'Sheila Smith' rod shape-determining protein MreB YP_001495271.1 1083728 R 392021 CDS YP_001495272.1 157829030 5648506 complement(1084979..1086067) 1 NC_009882.1 COG0795 Predicted permeases; hypothetical protein 1086067 5648506 A1G_06555 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495272.1 1084979 R 392021 CDS YP_001495273.1 157829031 5648508 complement(1086496..1086963) 1 NC_009882.1 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; peptidoglycan-associated lipoprotein 1086963 5648508 A1G_06560 Rickettsia rickettsii str. 'Sheila Smith' peptidoglycan-associated lipoprotein YP_001495273.1 1086496 R 392021 CDS YP_001495274.1 157829032 5648509 1087179..1087448 1 NC_009882.1 hypothetical protein 1087448 5648509 A1G_06565 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495274.1 1087179 D 392021 CDS YP_001495275.1 157829033 5648510 complement(1087438..1088394) 1 NC_009882.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1088394 5648510 A1G_06570 Rickettsia rickettsii str. 'Sheila Smith' 3-oxoacyl-ACP synthase YP_001495275.1 1087438 R 392021 CDS YP_001495276.1 157829034 5648511 complement(1088402..1088602) 1 NC_009882.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1088602 rpmF 5648511 rpmF Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L32 YP_001495276.1 1088402 R 392021 CDS YP_001495277.1 157829035 5648512 1088698..1089171 1 NC_009882.1 COG2913 Small protein A (tmRNA-binding); hypothetical protein 1089171 5648512 A1G_06580 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495277.1 1088698 D 392021 CDS YP_001495278.1 157829036 5647863 1089375..1090286 1 NC_009882.1 COG0552 Signal recognition particle GTPase; cell division protein ftsY 1090286 5647863 A1G_06585 Rickettsia rickettsii str. 'Sheila Smith' cell division protein ftsY YP_001495278.1 1089375 D 392021 CDS YP_001495279.1 157829037 5647864 1090450..1093077 1 NC_009882.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 1093077 5647864 A1G_06590 Rickettsia rickettsii str. 'Sheila Smith' DNA polymerase I YP_001495279.1 1090450 D 392021 CDS YP_001495280.1 157829038 5647865 1093598..1093933 1 NC_009882.1 COG0192 S-adenosylmethionine synthetase; S-adenosylmethionine synthetase 1093933 5647865 A1G_06605 Rickettsia rickettsii str. 'Sheila Smith' S-adenosylmethionine synthetase YP_001495280.1 1093598 D 392021 CDS YP_001495281.1 157829039 5647866 1094442..1094684 1 NC_009882.1 hypothetical protein 1094684 5647866 A1G_06620 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495281.1 1094442 D 392021 CDS YP_001495282.1 157829040 5647867 1094746..1095006 1 NC_009882.1 hypothetical protein 1095006 5647867 A1G_06625 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495282.1 1094746 D 392021 CDS YP_001495283.1 157829041 5647868 1095179..1095421 1 NC_009882.1 hypothetical protein 1095421 5647868 A1G_06630 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495283.1 1095179 D 392021 CDS YP_001495284.1 157829042 5647869 1095461..1095766 1 NC_009882.1 hypothetical protein 1095766 5647869 A1G_06635 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495284.1 1095461 D 392021 CDS YP_001495285.1 157829043 5647870 complement(1095658..1099203) 1 NC_009882.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1099203 dnaE 5647870 dnaE Rickettsia rickettsii str. 'Sheila Smith' DNA polymerase III subunit alpha YP_001495285.1 1095658 R 392021 CDS YP_001495286.1 157829044 5647871 complement(1099339..1100637) 1 NC_009882.1 COG1004 Predicted UDP-glucose 6-dehydrogenase; UDP-glucose 6-dehydrogenase 1100637 5647871 A1G_06645 Rickettsia rickettsii str. 'Sheila Smith' UDP-glucose 6-dehydrogenase YP_001495286.1 1099339 R 392021 CDS YP_001495287.1 157829045 5647872 1100886..1103396 1 NC_009882.1 hypothetical protein 1103396 5647872 A1G_06650 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495287.1 1100886 D 392021 CDS YP_001495288.1 157829046 5647873 1103534..1105075 1 NC_009882.1 COG0477 Permeases of the major facilitator superfamily; AmpG protein 1105075 5647873 A1G_06655 Rickettsia rickettsii str. 'Sheila Smith' AmpG protein YP_001495288.1 1103534 D 392021 CDS YP_001495289.1 157829047 5647567 1105142..1105897 1 NC_009882.1 COG0805 Sec-independent protein secretion pathway component TatC; sec-independent protein translocase protein TatC 1105897 5647567 A1G_06660 Rickettsia rickettsii str. 'Sheila Smith' sec-independent protein translocase protein TatC YP_001495289.1 1105142 D 392021 CDS YP_001495290.1 157829048 5647568 1105875..1107152 1 NC_009882.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1107152 5647568 A1G_06665 Rickettsia rickettsii str. 'Sheila Smith' seryl-tRNA synthetase YP_001495290.1 1105875 D 392021 CDS YP_001495291.1 157829049 5647569 1107497..1109929 1 NC_009882.1 COG3451 Type IV secretory pathway, VirB4 components; virB4 protein 1109929 5647569 A1G_06670 Rickettsia rickettsii str. 'Sheila Smith' virB4 protein YP_001495291.1 1107497 D 392021 CDS YP_001495292.1 157829050 5647570 1110065..1113553 1 NC_009882.1 hypothetical protein 1113553 5647570 A1G_06675 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495292.1 1110065 D 392021 CDS YP_001495293.1 157829051 5647571 1113558..1114463 1 NC_009882.1 COG0861 Membrane protein TerC, possibly involved in tellurium resistance; tellurium resistance protein TerC 1114463 5647571 A1G_06680 Rickettsia rickettsii str. 'Sheila Smith' tellurium resistance protein TerC YP_001495293.1 1113558 D 392021 CDS YP_001495294.1 157829052 5647572 1114507..1115217 1 NC_009882.1 COG3637 Opacity protein and related surface antigens; hypothetical protein 1115217 5647572 A1G_06685 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495294.1 1114507 D 392021 CDS YP_001495295.1 157829053 5647573 1115303..1116967 1 NC_009882.1 COG0500 SAM-dependent methyltransferases; hypothetical protein 1116967 5647573 A1G_06690 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495295.1 1115303 D 392021 CDS YP_001495296.1 157829054 5647574 1117010..1117246 1 NC_009882.1 hypothetical protein 1117246 5647574 A1G_06695 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495296.1 1117010 D 392021 CDS YP_001495297.1 157829055 5647575 1117305..1117733 1 NC_009882.1 COG2944 Predicted transcriptional regulator; hypothetical protein 1117733 5647575 A1G_06700 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495297.1 1117305 D 392021 CDS YP_001495298.1 157829056 5647576 1117766..1118383 1 NC_009882.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 1118383 5647576 A1G_06705 Rickettsia rickettsii str. 'Sheila Smith' NADH dehydrogenase subunit J YP_001495298.1 1117766 D 392021 CDS YP_001495299.1 157829057 5647577 1118376..1118690 1 NC_009882.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 1118690 5647577 A1G_06710 Rickettsia rickettsii str. 'Sheila Smith' NADH dehydrogenase subunit K YP_001495299.1 1118376 D 392021 CDS YP_001495300.1 157829058 5647963 1118690..1120663 1 NC_009882.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 1120663 5647963 A1G_06715 Rickettsia rickettsii str. 'Sheila Smith' NADH dehydrogenase subunit L YP_001495300.1 1118690 D 392021 CDS YP_001495301.1 157829059 5647964 1120817..1122298 1 NC_009882.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 1122298 5647964 A1G_06720 Rickettsia rickettsii str. 'Sheila Smith' NADH dehydrogenase subunit M YP_001495301.1 1120817 D 392021 CDS YP_001495302.1 157829060 5647965 1122652..1123227 1 NC_009882.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 1123227 5647965 A1G_06725 Rickettsia rickettsii str. 'Sheila Smith' cytochrome c biogenesis protein CcmA YP_001495302.1 1122652 D 392021 CDS YP_001495303.1 157829061 5647966 complement(1123709..1124188) 1 NC_009882.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1124188 5647966 A1G_06730 Rickettsia rickettsii str. 'Sheila Smith' NADH dehydrogenase subunit I YP_001495303.1 1123709 R 392021 CDS YP_001495304.1 157829062 5647967 complement(1124375..1125394) 1 NC_009882.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 1125394 5647967 A1G_06735 Rickettsia rickettsii str. 'Sheila Smith' NADH dehydrogenase subunit H YP_001495304.1 1124375 R 392021 CDS YP_001495305.1 157829063 5647968 complement(1125516..1127546) 1 NC_009882.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 1127546 5647968 A1G_06740 Rickettsia rickettsii str. 'Sheila Smith' NADH dehydrogenase subunit G YP_001495305.1 1125516 R 392021 CDS YP_001495306.1 157829064 5647969 complement(1127534..1127890) 1 NC_009882.1 COG3671 Predicted membrane protein; hypothetical protein 1127890 5647969 A1G_06745 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495306.1 1127534 R 392021 CDS YP_001495307.1 157829065 5647970 complement(1128059..1130695) 1 NC_009882.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1130695 5647970 A1G_06750 Rickettsia rickettsii str. 'Sheila Smith' aconitate hydratase YP_001495307.1 1128059 R 392021 CDS YP_001495308.1 157829066 5647971 complement(1130877..1131215) 1 NC_009882.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 1131215 atpC 5647971 atpC Rickettsia rickettsii str. 'Sheila Smith' F0F1 ATP synthase subunit epsilon YP_001495308.1 1130877 R 392021 CDS YP_001495309.1 157829067 5647972 complement(1131273..1132694) 1 NC_009882.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 1132694 5647972 A1G_06760 Rickettsia rickettsii str. 'Sheila Smith' F0F1 ATP synthase subunit beta YP_001495309.1 1131273 R 392021 CDS YP_001495310.1 157829068 5647973 complement(1132867..1133838) 1 NC_009882.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 1133838 5647973 A1G_06765 Rickettsia rickettsii str. 'Sheila Smith' F0F1 ATP synthase subunit gamma YP_001495310.1 1132867 R 392021 CDS YP_001495311.1 157829069 5647513 complement(1133972..1135504) 1 NC_009882.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 1135504 5647513 A1G_06770 Rickettsia rickettsii str. 'Sheila Smith' F0F1 ATP synthase subunit alpha YP_001495311.1 1133972 R 392021 CDS YP_001495312.1 157829070 5647514 complement(1135670..1136224) 1 NC_009882.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 1136224 5647514 A1G_06775 Rickettsia rickettsii str. 'Sheila Smith' F0F1 ATP synthase subunit delta YP_001495312.1 1135670 R 392021 CDS YP_001495313.1 157829071 5647515 complement(1136388..1137767) 1 NC_009882.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1137767 5647515 A1G_06780 Rickettsia rickettsii str. 'Sheila Smith' dihydrolipoamide dehydrogenase YP_001495313.1 1136388 R 392021 CDS YP_001495314.1 157829072 5647516 complement(1137922..1138350) 1 NC_009882.1 COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); Strees induced DNA-binding protein 1138350 5647516 A1G_06785 Rickettsia rickettsii str. 'Sheila Smith' Strees induced DNA-binding protein YP_001495314.1 1137922 R 392021 CDS YP_001495315.1 157829073 5647517 1138547..1138807 1 NC_009882.1 hypothetical protein 1138807 5647517 A1G_06790 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495315.1 1138547 D 392021 CDS YP_001495316.1 157829074 5647518 1139018..1139221 1 NC_009882.1 hypothetical protein 1139221 5647518 A1G_06795 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495316.1 1139018 D 392021 CDS YP_001495317.1 157829075 5647519 1139309..1139425 1 NC_009882.1 hypothetical protein 1139425 5647519 A1G_06800 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495317.1 1139309 D 392021 CDS YP_001495318.1 157829076 5647520 complement(1139684..1139986) 1 NC_009882.1 COG2602 Beta-lactamase class D; hypothetical protein 1139986 5647520 A1G_06805 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495318.1 1139684 R 392021 CDS YP_001495319.1 157829077 5647521 complement(1140125..1140397) 1 NC_009882.1 COG2602 Beta-lactamase class D; hypothetical protein 1140397 5647521 A1G_06810 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495319.1 1140125 R 392021 CDS YP_001495320.1 157829078 5647522 complement(1140829..1143201) 1 NC_009882.1 COG5009 Membrane carboxypeptidase/penicillin-binding protein; penicillin-binding protein 1a 1143201 5647522 A1G_06815 Rickettsia rickettsii str. 'Sheila Smith' penicillin-binding protein 1a YP_001495320.1 1140829 R 392021 CDS YP_001495321.1 157829079 5647523 complement(1143205..1144542) 1 NC_009882.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1144542 5647523 A1G_06820 Rickettsia rickettsii str. 'Sheila Smith' (dimethylallyl)adenosine tRNA methylthiotransferase YP_001495321.1 1143205 R 392021 CDS YP_001495322.1 157829080 5647996 complement(1145297..1145404) 1 NC_009882.1 hypothetical protein 1145404 5647996 A1G_06830 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495322.1 1145297 R 392021 CDS YP_001495323.1 157829081 5647997 complement(1145815..1145958) 1 NC_009882.1 hypothetical protein 1145958 5647997 A1G_06845 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495323.1 1145815 R 392021 CDS YP_001495324.1 157829082 5647998 complement(1145998..1146147) 1 NC_009882.1 hypothetical protein 1146147 5647998 A1G_06850 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495324.1 1145998 R 392021 CDS YP_001495325.1 157829083 5647999 complement(1146228..1146581) 1 NC_009882.1 hypothetical protein 1146581 5647999 A1G_06855 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495325.1 1146228 R 392021 CDS YP_001495326.1 157829084 5648000 1146748..1147017 1 NC_009882.1 hypothetical protein 1147017 5648000 A1G_06860 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495326.1 1146748 D 392021 CDS YP_001495327.1 157829085 5648001 complement(1146886..1147365) 1 NC_009882.1 COG3807 Uncharacterized protein conserved in bacteria; hypothetical protein 1147365 5648001 A1G_06865 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495327.1 1146886 R 392021 CDS YP_001495328.1 157829086 5648002 complement(1147358..1149085) 1 NC_009882.1 COG0475 Kef-type K+ transport systems, membrane components; glutathione-regulated potassium-efflux system protein kefB 1149085 5648002 A1G_06870 Rickettsia rickettsii str. 'Sheila Smith' glutathione-regulated potassium-efflux system protein kefB YP_001495328.1 1147358 R 392021 CDS YP_001495329.1 157829087 5648003 complement(1149082..1149408) 1 NC_009882.1 COG0799 Uncharacterized homolog of plant Iojap protein; Iojap-related protein 1149408 5648003 A1G_06875 Rickettsia rickettsii str. 'Sheila Smith' Iojap-related protein YP_001495329.1 1149082 R 392021 CDS YP_001495330.1 157829088 5648004 1149564..1149803 1 NC_009882.1 COG0271 Stress-induced morphogen (activity unknown); hypothetical protein 1149803 5648004 A1G_06880 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495330.1 1149564 D 392021 CDS YP_001495331.1 157829089 5648005 1151064..1151249 1 NC_009882.1 hypothetical protein 1151249 5648005 A1G_06890 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495331.1 1151064 D 392021 CDS YP_001495332.1 157829090 5648006 1151463..1151654 1 NC_009882.1 hypothetical protein 1151654 5648006 A1G_06895 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495332.1 1151463 D 392021 CDS YP_001495333.1 157829091 5647874 1152365..1152502 1 NC_009882.1 hypothetical protein 1152502 5647874 A1G_06905 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495333.1 1152365 D 392021 CDS YP_001495334.1 157829092 5647875 complement(1152910..1153230) 1 NC_009882.1 hypothetical protein 1153230 5647875 A1G_06910 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495334.1 1152910 R 392021 CDS YP_001495335.1 157829093 5647876 complement(1153240..1153524) 1 NC_009882.1 cell surface antigen-like protein Sca13 1153524 5647876 A1G_06915 Rickettsia rickettsii str. 'Sheila Smith' cell surface antigen-like protein Sca13 YP_001495335.1 1153240 R 392021 CDS YP_001495336.1 157829094 5647877 complement(1155655..1155897) 1 NC_009882.1 hypothetical protein 1155897 5647877 A1G_06935 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495336.1 1155655 R 392021 CDS YP_001495337.1 157829095 5647878 complement(1156418..1156660) 1 NC_009882.1 hypothetical protein 1156660 5647878 A1G_06940 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495337.1 1156418 R 392021 CDS YP_001495338.1 157829096 5647880 1157376..1157591 1 NC_009882.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1157591 infA 5647880 infA Rickettsia rickettsii str. 'Sheila Smith' translation initiation factor IF-1 YP_001495338.1 1157376 D 392021 CDS YP_001495339.1 157829097 5647881 1157603..1158250 1 NC_009882.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1158250 5647881 A1G_06950 Rickettsia rickettsii str. 'Sheila Smith' Maf-like protein YP_001495339.1 1157603 D 392021 CDS YP_001495340.1 157829098 5647882 complement(1158384..1158815) 1 NC_009882.1 COG1734 DnaK suppressor protein; hypothetical protein 1158815 5647882 A1G_06955 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495340.1 1158384 R 392021 CDS YP_001495341.1 157829099 5647883 complement(1158983..1159900) 1 NC_009882.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 1159900 xerC 5647883 xerC Rickettsia rickettsii str. 'Sheila Smith' site-specific tyrosine recombinase XerC YP_001495341.1 1158983 R 392021 CDS YP_001495342.1 157829100 5648739 1160211..1160360 1 NC_009882.1 phasin family protein 1160360 5648739 A1G_06965 Rickettsia rickettsii str. 'Sheila Smith' phasin family protein YP_001495342.1 1160211 D 392021 CDS YP_001495343.1 157829101 5648740 complement(1160408..1161010) 1 NC_009882.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; hypothetical protein 1161010 5648740 A1G_06970 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495343.1 1160408 R 392021 CDS YP_001495344.1 157829102 5648741 complement(1161159..1161302) 1 NC_009882.1 hypothetical protein 1161302 5648741 A1G_06975 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495344.1 1161159 R 392021 CDS YP_001495345.1 157829103 5648742 complement(1161729..1163207) 1 NC_009882.1 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; hypothetical protein 1163207 5648742 A1G_06980 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495345.1 1161729 R 392021 CDS YP_001495346.1 157829104 5648743 complement(1163354..1164928) 1 NC_009882.1 COG0760 Parvulin-like peptidyl-prolyl isomerase; hypothetical protein 1164928 5648743 A1G_06985 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495346.1 1163354 R 392021 CDS YP_001495347.1 157829105 5648744 complement(1165122..1171871) 1 NC_009882.1 hypothetical protein 1171871 5648744 A1G_06990 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495347.1 1165122 R 392021 CDS YP_001495348.1 157829106 5648745 1171981..1172115 1 NC_009882.1 COG1140 Nitrate reductase beta subunit; hypothetical protein 1172115 5648745 A1G_06995 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495348.1 1171981 D 392021 CDS YP_001495349.1 157829107 5648746 complement(1172112..1172222) 1 NC_009882.1 hypothetical protein 1172222 5648746 A1G_07000 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495349.1 1172112 R 392021 CDS YP_001495350.1 157829108 5648747 complement(1172380..1172475) 1 NC_009882.1 hypothetical protein 1172475 5648747 A1G_07005 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495350.1 1172380 R 392021 CDS YP_001495351.1 157829109 5648748 complement(1172650..1174884) 1 NC_009882.1 COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; hypothetical protein 1174884 5648748 A1G_07010 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495351.1 1172650 R 392021 CDS YP_001495352.1 157829110 5648749 complement(1175135..1175920) 1 NC_009882.1 COG1835 Predicted acyltransferases; hypothetical protein 1175920 5648749 A1G_07015 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495352.1 1175135 R 392021 CDS YP_001495353.1 157829111 5648099 1176081..1176860 1 NC_009882.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 1176860 5648099 A1G_07020 Rickettsia rickettsii str. 'Sheila Smith' methionine aminopeptidase YP_001495353.1 1176081 D 392021 CDS YP_001495354.1 157829112 5648100 1177111..1177422 1 NC_009882.1 COG2003 DNA repair proteins; hypothetical protein 1177422 5648100 A1G_07025 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495354.1 1177111 D 392021 CDS YP_001495355.1 157829113 5648101 1177427..1177795 1 NC_009882.1 COG2003 DNA repair proteins; hypothetical protein 1177795 5648101 A1G_07030 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495355.1 1177427 D 392021 CDS YP_001495356.1 157829114 5648102 1177782..1178765 1 NC_009882.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase 1178765 5648102 A1G_07035 Rickettsia rickettsii str. 'Sheila Smith' undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase YP_001495356.1 1177782 D 392021 CDS YP_001495357.1 157829115 5648103 1178762..1179085 1 NC_009882.1 hypothetical protein 1179085 5648103 A1G_07040 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495357.1 1178762 D 392021 CDS YP_001495358.1 157829116 5648104 complement(1179567..1180307) 1 NC_009882.1 COG3637 Opacity protein and related surface antigens; hypothetical protein 1180307 5648104 A1G_07045 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495358.1 1179567 R 392021 CDS YP_001495359.1 157829117 5648105 complement(1180549..1181223) 1 NC_009882.1 COG3637 Opacity protein and related surface antigens; hypothetical protein 1181223 5648105 A1G_07050 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495359.1 1180549 R 392021 CDS YP_001495360.1 157829118 5648106 complement(1181458..1181808) 1 NC_009882.1 COG1146 Ferredoxin; ferredoxin 1181808 5648106 A1G_07055 Rickettsia rickettsii str. 'Sheila Smith' ferredoxin YP_001495360.1 1181458 R 392021 CDS YP_001495361.1 157829119 5648107 complement(1181813..1182505) 1 NC_009882.1 COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component; heme exporter protein C 1182505 5648107 A1G_07060 Rickettsia rickettsii str. 'Sheila Smith' heme exporter protein C YP_001495361.1 1181813 R 392021 CDS YP_001495362.1 157829120 5648108 complement(1182520..1183026) 1 NC_009882.1 COG0590 Cytosine/adenosine deaminases; cytosine deaminase 1183026 5648108 A1G_07065 Rickettsia rickettsii str. 'Sheila Smith' cytosine deaminase YP_001495362.1 1182520 R 392021 CDS YP_001495363.1 157829121 5648109 complement(1183007..1183912) 1 NC_009882.1 COG0053 Predicted Co/Zn/Cd cation transporters; protein p34 1183912 5648109 A1G_07070 Rickettsia rickettsii str. 'Sheila Smith' protein p34 YP_001495363.1 1183007 R 392021 CDS YP_001495364.1 157829122 5648673 1184114..1184593 1 NC_009882.1 COG4520 Surface antigen; 17 kD surface antigen 1184593 5648673 A1G_07075 Rickettsia rickettsii str. 'Sheila Smith' 17 kD surface antigen YP_001495364.1 1184114 D 392021 CDS YP_001495365.1 157829123 5648674 1184724..1184993 1 NC_009882.1 COG1881 Phospholipid-binding protein; hypothetical protein 1184993 5648674 A1G_07080 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495365.1 1184724 D 392021 CDS YP_001495366.1 157829124 5648675 1185329..1186030 1 NC_009882.1 COG1121 ABC-type Mn/Zn transport systems, ATPase component; zinc ABC transporter ATP-binding protein 1186030 5648675 A1G_07085 Rickettsia rickettsii str. 'Sheila Smith' zinc ABC transporter ATP-binding protein YP_001495366.1 1185329 D 392021 CDS YP_001495367.1 157829125 5648676 complement(1186127..1186504) 1 NC_009882.1 hypothetical protein 1186504 5648676 A1G_07090 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495367.1 1186127 R 392021 CDS YP_001495368.1 157829126 5648677 complement(1186756..1186848) 1 NC_009882.1 hypothetical protein 1186848 5648677 A1G_07095 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495368.1 1186756 R 392021 CDS YP_001495369.1 157829127 5648678 complement(1186829..1187119) 1 NC_009882.1 hypothetical protein 1187119 5648678 A1G_07100 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495369.1 1186829 R 392021 CDS YP_001495370.1 157829128 5648679 complement(1187342..1187629) 1 NC_009882.1 hypothetical protein 1187629 5648679 A1G_07105 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495370.1 1187342 R 392021 CDS YP_001495371.1 157829129 5648680 complement(1187767..1188048) 1 NC_009882.1 hypothetical protein 1188048 5648680 A1G_07110 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495371.1 1187767 R 392021 CDS YP_001495372.1 157829130 5648681 complement(1188220..1191081) 1 NC_009882.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 1191081 uvrA 5648681 uvrA Rickettsia rickettsii str. 'Sheila Smith' excinuclease ABC subunit A YP_001495372.1 1188220 R 392021 CDS YP_001495373.1 157829131 5648682 1191186..1191644 1 NC_009882.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 1191644 5648682 A1G_07120 Rickettsia rickettsii str. 'Sheila Smith' single-stranded DNA-binding protein YP_001495373.1 1191186 D 392021 CDS YP_001495374.1 157829132 5648683 1191656..1192486 1 NC_009882.1 hypothetical protein 1192486 5648683 A1G_07125 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495374.1 1191656 D 392021 CDS YP_001495375.1 157829133 5648039 1192527..1192820 1 NC_009882.1 MFS type sugar transporter 1192820 5648039 A1G_07130 Rickettsia rickettsii str. 'Sheila Smith' MFS type sugar transporter YP_001495375.1 1192527 D 392021 CDS YP_001495376.1 157829134 5648040 complement(1193313..1193675) 1 NC_009882.1 hypothetical protein 1193675 5648040 A1G_07135 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495376.1 1193313 R 392021 CDS YP_001495377.1 157829135 5648042 1194163..1194480 1 NC_009882.1 COG1872 Uncharacterized conserved protein; hypothetical protein 1194480 5648042 A1G_07140 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495377.1 1194163 D 392021 CDS YP_001495378.1 157829136 5648043 1194624..1196489 1 NC_009882.1 molecular chaperone; heat shock protein 90 1196489 5648043 A1G_07145 Rickettsia rickettsii str. 'Sheila Smith' heat shock protein 90 YP_001495378.1 1194624 D 392021 CDS YP_001495379.1 157829137 5648044 1196669..1197910 1 NC_009882.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase 1197910 5648044 A1G_07150 Rickettsia rickettsii str. 'Sheila Smith' 5-aminolevulinate synthase YP_001495379.1 1196669 D 392021 CDS YP_001495380.1 157829138 5648045 1198695..1198988 1 NC_009882.1 hypothetical protein 1198988 5648045 A1G_07155 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495380.1 1198695 D 392021 CDS YP_001495381.1 157829139 5648046 1199396..1200733 1 NC_009882.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1200733 tig 5648046 tig Rickettsia rickettsii str. 'Sheila Smith' trigger factor YP_001495381.1 1199396 D 392021 CDS YP_001495382.1 157829140 5648047 complement(1200837..1201883) 1 NC_009882.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1201883 obgE 5648047 obgE Rickettsia rickettsii str. 'Sheila Smith' GTPase ObgE YP_001495382.1 1200837 R 392021 CDS YP_001495383.1 157829141 5648048 complement(1201938..1203242) 1 NC_009882.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 1203242 gltA 5648048 gltA Rickettsia rickettsii str. 'Sheila Smith' type II citrate synthase YP_001495383.1 1201938 R 392021 CDS YP_001495384.1 157829142 5648555 complement(1203373..1203522) 1 NC_009882.1 COG3636 Predicted transcriptional regulator; transcriptional regulator 1203522 5648555 A1G_07175 Rickettsia rickettsii str. 'Sheila Smith' transcriptional regulator YP_001495384.1 1203373 R 392021 CDS YP_001495385.1 157829143 5648556 complement(1203885..1204670) 1 NC_009882.1 COG1573 Uracil-DNA glycosylase; hypothetical protein 1204670 5648556 A1G_07180 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495385.1 1203885 R 392021 CDS YP_001495386.1 157829144 5648557 1204687..1205628 1 NC_009882.1 COG0564 Pseudouridylate synthases, 23S RNA-specific; hypothetical protein 1205628 5648557 A1G_07185 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495386.1 1204687 D 392021 CDS YP_001495387.1 157829145 5648558 1205913..1206125 1 NC_009882.1 hypothetical protein 1206125 5648558 A1G_07190 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495387.1 1205913 D 392021 CDS YP_001495388.1 157829146 5648559 1206276..1206461 1 NC_009882.1 hypothetical protein 1206461 5648559 A1G_07195 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495388.1 1206276 D 392021 CDS YP_001495389.1 157829147 5648560 1206470..1208044 1 NC_009882.1 fusion of hemK/trmB; N-terminal HemK domain transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; C-terminal; bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase 1208044 5648560 A1G_07200 Rickettsia rickettsii str. 'Sheila Smith' bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase YP_001495389.1 1206470 D 392021 CDS YP_001495390.1 157829148 5648561 complement(1208013..1208948) 1 NC_009882.1 COG0009 Putative translation factor (SUA5); hypothetical protein 1208948 5648561 A1G_07205 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495390.1 1208013 R 392021 CDS YP_001495391.1 157829149 5648562 complement(1208945..1210957) 1 NC_009882.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 1210957 glyS 5648562 glyS Rickettsia rickettsii str. 'Sheila Smith' glycyl-tRNA synthetase subunit beta YP_001495391.1 1208945 R 392021 CDS YP_001495392.1 157829150 5648563 complement(1210936..1211802) 1 NC_009882.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 1211802 glyQ 5648563 glyQ Rickettsia rickettsii str. 'Sheila Smith' glycyl-tRNA synthetase subunit alpha YP_001495392.1 1210936 R 392021 CDS YP_001495393.1 157829151 5648564 complement(1211857..1212240) 1 NC_009882.1 COG1487 Predicted nucleic acid-binding protein, contains PIN domain; hypothetical protein 1212240 5648564 A1G_07220 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495393.1 1211857 R 392021 CDS YP_001495394.1 157829152 5648565 complement(1212237..1212482) 1 NC_009882.1 hypothetical protein 1212482 5648565 A1G_07225 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495394.1 1212237 R 392021 CDS YP_001495395.1 157829153 5648640 complement(1212569..1213198) 1 NC_009882.1 COG1636 Uncharacterized protein conserved in bacteria; hypothetical protein 1213198 5648640 A1G_07230 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495395.1 1212569 R 392021 CDS YP_001495396.1 157829154 5648641 complement(1214680..1215630) 1 NC_009882.1 hypothetical protein 1215630 5648641 A1G_07245 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495396.1 1214680 R 392021 CDS YP_001495397.1 157829155 5648642 complement(1215640..1216275) 1 NC_009882.1 COG1474 Cdc6-related protein, AAA superfamily ATPase; hypothetical protein 1216275 5648642 A1G_07250 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495397.1 1215640 R 392021 CDS YP_001495398.1 157829156 5648643 complement(1216350..1217921) 1 NC_009882.1 hypothetical protein 1217921 5648643 A1G_07255 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495398.1 1216350 R 392021 CDS YP_001495399.1 157829157 5648644 1218119..1220752 1 NC_009882.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1220752 alaS 5648644 alaS Rickettsia rickettsii str. 'Sheila Smith' alanyl-tRNA synthetase YP_001495399.1 1218119 D 392021 CDS YP_001495400.1 157829158 5648645 complement(1220952..1221689) 1 NC_009882.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1221689 truA 5648645 truA Rickettsia rickettsii str. 'Sheila Smith' tRNA pseudouridine synthase A YP_001495400.1 1220952 R 392021 CDS YP_001495401.1 157829159 5648646 complement(1221785..1223689) 1 NC_009882.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 1223689 5648646 A1G_07270 Rickettsia rickettsii str. 'Sheila Smith' RNA polymerase sigma factor RpoD YP_001495401.1 1221785 R 392021 CDS YP_001495402.1 157829160 5648647 complement(1223734..1225521) 1 NC_009882.1 synthesizes RNA primers at the replication forks; DNA primase 1225521 dnaG 5648647 dnaG Rickettsia rickettsii str. 'Sheila Smith' DNA primase YP_001495402.1 1223734 R 392021 CDS YP_001495403.1 157829161 5648648 complement(1225526..1226140) 1 NC_009882.1 COG0170 Dolichol kinase; hypothetical protein 1226140 5648648 A1G_07280 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495403.1 1225526 R 392021 CDS YP_001495404.1 157829162 5648649 1226269..1226889 1 NC_009882.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 1226889 greA 5648649 greA Rickettsia rickettsii str. 'Sheila Smith' transcription elongation factor GreA YP_001495404.1 1226269 D 392021 CDS YP_001495405.1 157829163 5648650 complement(1227047..1227445) 1 NC_009882.1 COG3288 NAD/NADP transhydrogenase alpha subunit; NAD(p) transhydrogenase subunit alpha 1227445 5648650 A1G_07290 Rickettsia rickettsii str. 'Sheila Smith' NAD(p) transhydrogenase subunit alpha YP_001495405.1 1227047 R 392021 CDS YP_001495406.1 157829164 5648728 complement(1227442..1228566) 1 NC_009882.1 COG3288 NAD/NADP transhydrogenase alpha subunit; NAD(P) transhydrogenase subunit alpha 1228566 5648728 A1G_07295 Rickettsia rickettsii str. 'Sheila Smith' NAD(P) transhydrogenase subunit alpha YP_001495406.1 1227442 R 392021 CDS YP_001495407.1 157829165 5648729 1228642..1229280 1 NC_009882.1 COG2834 Outer membrane lipoprotein-sorting protein; hypothetical protein 1229280 5648729 A1G_07300 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495407.1 1228642 D 392021 CDS YP_001495408.1 157829166 5648730 1229502..1231031 1 NC_009882.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; rhe tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 1231031 5648730 A1G_07305 Rickettsia rickettsii str. 'Sheila Smith' DNA polymerase III subunits gamma and tau YP_001495408.1 1229502 D 392021 CDS YP_001495409.1 157829167 5648731 1231051..1231374 1 NC_009882.1 COG0718 Uncharacterized protein conserved in bacteria; hypothetical protein 1231374 5648731 A1G_07310 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495409.1 1231051 D 392021 CDS YP_001495410.1 157829168 5648732 complement(1231583..1231732) 1 NC_009882.1 hypothetical protein 1231732 5648732 A1G_07315 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495410.1 1231583 R 392021 CDS YP_001495411.1 157829169 5648733 complement(1231786..1231863) 1 NC_009882.1 hypothetical protein 1231863 5648733 A1G_07320 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495411.1 1231786 R 392021 CDS YP_001495412.1 157829170 5648734 complement(1231860..1232027) 1 NC_009882.1 hypothetical protein 1232027 5648734 A1G_07325 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495412.1 1231860 R 392021 CDS YP_001495413.1 157829171 5648735 complement(1232252..1232947) 1 NC_009882.1 COG3577 Predicted aspartyl protease; hypothetical protein 1232947 5648735 A1G_07330 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495413.1 1232252 R 392021 CDS YP_001495414.1 157829172 5648736 complement(1233008..1233226) 1 NC_009882.1 beta-lactamase AmpC 1233226 5648736 A1G_07335 Rickettsia rickettsii str. 'Sheila Smith' beta-lactamase AmpC YP_001495414.1 1233008 R 392021 CDS YP_001495415.1 157829173 5648737 1233489..1233671 1 NC_009882.1 hypothetical protein 1233671 5648737 A1G_07340 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495415.1 1233489 D 392021 CDS YP_001495416.1 157829174 5648738 complement(1233787..1233873) 1 NC_009882.1 hypothetical protein 1233873 5648738 A1G_07345 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495416.1 1233787 R 392021 CDS YP_001495417.1 157829175 5648618 complement(1233866..1234000) 1 NC_009882.1 beta-lactamase AmpC 1234000 5648618 A1G_07350 Rickettsia rickettsii str. 'Sheila Smith' beta-lactamase AmpC YP_001495417.1 1233866 R 392021 CDS YP_001495418.1 157829176 5648619 complement(1234144..1234383) 1 NC_009882.1 COG2161 Antitoxin of toxin-antitoxin stability system; antitoxin of toxin-antitoxin system StbD 1234383 5648619 A1G_07355 Rickettsia rickettsii str. 'Sheila Smith' antitoxin of toxin-antitoxin system StbD YP_001495418.1 1234144 R 392021 CDS YP_001495419.1 157829177 5648620 complement(1234588..1235310) 1 NC_009882.1 COG1126 ABC-type polar amino acid transport system, ATPase component; glutamine ABC transporter ATP-binding protein 1235310 5648620 A1G_07360 Rickettsia rickettsii str. 'Sheila Smith' glutamine ABC transporter ATP-binding protein YP_001495419.1 1234588 R 392021 CDS YP_001495420.1 157829178 5648621 complement(1235314..1236078) 1 NC_009882.1 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I; PhnP protein 1236078 5648621 A1G_07365 Rickettsia rickettsii str. 'Sheila Smith' PhnP protein YP_001495420.1 1235314 R 392021 CDS YP_001495421.1 157829179 5648622 1236093..1236740 1 NC_009882.1 COG0671 Membrane-associated phospholipid phosphatase; hypothetical protein 1236740 5648622 A1G_07370 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495421.1 1236093 D 392021 CDS YP_001495422.1 157829180 5648623 1236834..1237097 1 NC_009882.1 COG3077 DNA-damage-inducible protein J; DNA-damage-inducible protein J 1237097 5648623 A1G_07375 Rickettsia rickettsii str. 'Sheila Smith' DNA-damage-inducible protein J YP_001495422.1 1236834 D 392021 CDS YP_001495423.1 157829181 5648624 1237189..1237332 1 NC_009882.1 COG3041 Uncharacterized protein conserved in bacteria; RelE/StbE family addiction module toxin 1237332 5648624 A1G_07380 Rickettsia rickettsii str. 'Sheila Smith' RelE/StbE family addiction module toxin YP_001495423.1 1237189 D 392021 CDS YP_001495424.1 157829182 5648625 1237534..1238550 1 NC_009882.1 COG0795 Predicted permeases; hypothetical protein 1238550 5648625 A1G_07385 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495424.1 1237534 D 392021 CDS YP_001495425.1 157829183 5648626 complement(1238556..1239020) 1 NC_009882.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 1239020 5648626 A1G_07390 Rickettsia rickettsii str. 'Sheila Smith' DNA polymerase III subunit chi YP_001495425.1 1238556 R 392021 CDS YP_001495426.1 157829184 5648627 complement(1239052..1239183) 1 NC_009882.1 succinyl-diaminopimelate desuccinylase 1239183 5648627 A1G_07395 Rickettsia rickettsii str. 'Sheila Smith' succinyl-diaminopimelate desuccinylase YP_001495426.1 1239052 R 392021 CDS YP_001495427.1 157829185 5648628 complement(1239220..1240365) 1 NC_009882.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 1240365 5648628 A1G_07400 Rickettsia rickettsii str. 'Sheila Smith' succinyl-diaminopimelate desuccinylase YP_001495427.1 1239220 R 392021 CDS YP_001495428.1 157829186 5647652 complement(1240369..1240623) 1 NC_009882.1 COG0732 Restriction endonuclease S subunits; hypothetical protein 1240623 5647652 A1G_07405 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495428.1 1240369 R 392021 CDS YP_001495429.1 157829187 5647653 complement(1241123..1241293) 1 NC_009882.1 hypothetical protein 1241293 5647653 A1G_07410 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495429.1 1241123 R 392021 CDS YP_001495430.1 157829188 5647654 complement(1241363..1241821) 1 NC_009882.1 COG0286 Type I restriction-modification system methyltransferase subunit; hypothetical protein 1241821 5647654 A1G_07415 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495430.1 1241363 R 392021 CDS YP_001495431.1 157829189 5647655 complement(1242535..1242714) 1 NC_009882.1 Type I restriction-modification system methyltransferase subunit 1242714 5647655 A1G_07420 Rickettsia rickettsii str. 'Sheila Smith' Type I restriction-modification system methyltransferase subunit YP_001495431.1 1242535 R 392021 CDS YP_001495432.1 157829190 5647656 complement(1242829..1242990) 1 NC_009882.1 Type I restriction-modification system methyltransferase subunit 1242990 5647656 A1G_07425 Rickettsia rickettsii str. 'Sheila Smith' Type I restriction-modification system methyltransferase subunit YP_001495432.1 1242829 R 392021 CDS YP_001495433.1 157829191 5647657 1243105..1243242 1 NC_009882.1 hypothetical protein 1243242 5647657 A1G_07430 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495433.1 1243105 D 392021 CDS YP_001495434.1 157829192 5647658 1243160..1243960 1 NC_009882.1 COG3004 Na+/H+ antiporter; Na+/H+ antiporter NhaA 1243960 5647658 A1G_07435 Rickettsia rickettsii str. 'Sheila Smith' Na+/H+ antiporter NhaA YP_001495434.1 1243160 D 392021 CDS YP_001495435.1 157829193 5647659 1243983..1244066 1 NC_009882.1 hypothetical protein 1244066 5647659 A1G_07440 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495435.1 1243983 D 392021 CDS YP_001495436.1 157829194 5647660 complement(1244077..1244592) 1 NC_009882.1 COG1434 Uncharacterized conserved protein; hypothetical protein 1244592 5647660 A1G_07445 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495436.1 1244077 R 392021 CDS YP_001495437.1 157829195 5647661 complement(1244589..1245218) 1 NC_009882.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 1245218 lipB 5647661 lipB Rickettsia rickettsii str. 'Sheila Smith' lipoate-protein ligase B YP_001495437.1 1244589 R 392021 CDS YP_001495438.1 157829196 5647662 complement(1245215..1245958) 1 NC_009882.1 COG3023 Negative regulator of beta-lactamase expression; hypothetical protein 1245958 5647662 A1G_07455 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495438.1 1245215 R 392021 CDS YP_001495439.1 157829197 5648761 complement(1246451..1246786) 1 NC_009882.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1246786 rpsP 5648761 rpsP Rickettsia rickettsii str. 'Sheila Smith' 30S ribosomal protein S16 YP_001495439.1 1246451 R 392021 CDS YP_001495440.1 157829198 5648762 complement(1246803..1246973) 1 NC_009882.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1246973 rpmG 5648762 rpmG Rickettsia rickettsii str. 'Sheila Smith' 50S ribosomal protein L33 YP_001495440.1 1246803 R 392021 CDS YP_001495441.1 157829199 5648763 complement(1247194..1249026) 1 NC_009882.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1249026 mutL 5648763 mutL Rickettsia rickettsii str. 'Sheila Smith' DNA mismatch repair protein YP_001495441.1 1247194 R 392021 CDS YP_001495442.1 157829200 5648764 complement(1249034..1249186) 1 NC_009882.1 hypothetical protein 1249186 5648764 A1G_07475 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495442.1 1249034 R 392021 CDS YP_001495443.1 157829201 5648765 1250262..1250714 1 NC_009882.1 hypothetical protein 1250714 5648765 A1G_07480 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495443.1 1250262 D 392021 CDS YP_001495444.1 157829202 5648766 complement(1250906..1251361) 1 NC_009882.1 COG0457 FOG: TPR repeat; hypothetical protein 1251361 5648766 A1G_07485 Rickettsia rickettsii str. 'Sheila Smith' hypothetical protein YP_001495444.1 1250906 R 392021 CDS YP_001495445.1 157829203 5648767 1251498..1252772 1 NC_009882.1 COG0477 Permeases of the major facilitator superfamily; proline/betaine transporter 1252772 5648767 A1G_07490 Rickettsia rickettsii str. 'Sheila Smith' proline/betaine transporter YP_001495445.1 1251498 D 392021 CDS YP_001495446.1 157829204 5648768 1252756..1253595 1 NC_009882.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 1253595 5648768 A1G_07495 Rickettsia rickettsii str. 'Sheila Smith' coproporphyrinogen III oxidase YP_001495446.1 1252756 D 392021 CDS YP_001495447.1 157829205 5648769 complement(1254829..1255266) 1 NC_009882.1 COG1981 Predicted membrane protein; putative integral membrane protein 1255266 5648769 A1G_07510 Rickettsia rickettsii str. 'Sheila Smith' putative integral membrane protein YP_001495447.1 1254829 R 392021 CDS YP_001495448.1 157829206 5648523 complement(1255278..1256318) 1 NC_009882.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1256318 hemH 5648523 hemH Rickettsia rickettsii str. 'Sheila Smith' ferrochelatase YP_001495448.1 1255278 R 392021 CDS YP_001495449.1 157829207 5648524 complement(1256275..1257315) 1 NC_009882.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 1257315 hemE 5648524 hemE Rickettsia rickettsii str. 'Sheila Smith' uroporphyrinogen decarboxylase YP_001495449.1 1256275 R 392021 CDS