-- dump date 20140620_034015 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 562019000001 SEQ_END SEQ_END NC_012730.1 1288492 1288492 DR NC_012730.1; contig end 1288492..1288492 Rickettsia peacockii str. Rustic 562019000002 SEQ_END SEQ_END NC_012732.1 26406 26406 DR NC_012732.1; contig end 26406..26406 Rickettsia peacockii str. Rustic YP_002916064.1 CDS RPR_00005 NC_012730.1 1 825 D COG1806 Uncharacterized protein conserved in bacteria; hypothetical protein 1..825 Rickettsia peacockii str. Rustic 7942330 YP_002916065.1 CDS RPR_00010 NC_012730.1 1043 1360 D COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin 1043..1360 Rickettsia peacockii str. Rustic 7942881 YP_002916066.1 CDS RPR_00015 NC_012730.1 1371 2120 D COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component; O-antigen export system ATP-binding protein RfbE 1371..2120 Rickettsia peacockii str. Rustic 7942882 YP_002916067.1 CDS RPR_00020 NC_012730.1 2121 2897 D COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component; O-antigen export system permease protein RfbA 2121..2897 Rickettsia peacockii str. Rustic 7942883 YP_002916068.1 CDS RPR_00025 NC_012730.1 2894 5995 D undetermined function; putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase 2894..5995 Rickettsia peacockii str. Rustic 7942884 YP_002916069.1 CDS RPR_00030 NC_012730.1 6040 6279 R COG2337 Growth inhibitor; hypothetical protein complement(6040..6279) Rickettsia peacockii str. Rustic 7942885 YP_002916070.1 CDS RPR_00035 NC_012730.1 6625 7419 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(6625..7419) Rickettsia peacockii str. Rustic 7942886 YP_002916071.1 CDS fabZ NC_012730.1 7427 7864 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(7427..7864) Rickettsia peacockii str. Rustic 7942887 YP_002916072.1 CDS lpxD NC_012730.1 8060 9100 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(8060..9100) Rickettsia peacockii str. Rustic 7942888 YP_002916073.1 CDS RPR_00050 NC_012730.1 9930 10484 D COG1752 Predicted esterase of the alpha-beta hydrolase superfamily; alpha-beta hydrolase family esterase 9930..10484 Rickettsia peacockii str. Rustic 7942889 YP_002916074.1 CDS RPR_00055 NC_012730.1 11128 11874 R COG3022 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein complement(11128..11874) Rickettsia peacockii str. Rustic 7942890 YP_002916075.1 CDS himD NC_012730.1 12639 12881 R COG0776 Bacterial nucleoid DNA-binding protein; integration host factor beta-subunit complement(12639..12881) Rickettsia peacockii str. Rustic 7942891 YP_002916076.1 CDS rho NC_012730.1 13914 15290 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(13914..15290) Rickettsia peacockii str. Rustic 7942158 YP_002916077.1 CDS RPR_00105 NC_012730.1 17042 18805 R COG0608 Single-stranded DNA-specific exonuclease; single-stranded-DNA-specific exonuclease RecJ complement(17042..18805) Rickettsia peacockii str. Rustic 7942892 YP_002916078.1 CDS prfA NC_012730.1 18964 20031 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(18964..20031) Rickettsia peacockii str. Rustic 7942893 YP_002916079.1 CDS RPR_00115 NC_012730.1 20164 21402 R COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes; branched-chain alpha-keto acid dehydrogenase subunit E2 complement(20164..21402) Rickettsia peacockii str. Rustic 7942894 YP_002916080.1 CDS infC NC_012730.1 21548 22021 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(21548..22021) Rickettsia peacockii str. Rustic 7942895 YP_002916081.1 CDS RPR_00125 NC_012730.1 22172 22501 R COG5346 Predicted membrane protein; hypothetical protein complement(22172..22501) Rickettsia peacockii str. Rustic 7942896 YP_002916082.1 CDS RPR_00135 NC_012730.1 22851 23135 R hypothetical protein complement(22851..23135) Rickettsia peacockii str. Rustic 7942897 YP_002916083.1 CDS RPR_00140 NC_012730.1 23132 23608 R COG5448 Uncharacterized conserved protein; putative cytoplasmic protein complement(23132..23608) Rickettsia peacockii str. Rustic 7942898 YP_002916084.1 CDS RPR_00145 NC_012730.1 24069 24881 R COG0340 Biotin-(acetyl-CoA carboxylase) ligase; biotin--protein ligase complement(24069..24881) Rickettsia peacockii str. Rustic 7942899 YP_002916085.1 CDS RPR_00170 NC_012730.1 26792 27421 R COG0605 Superoxide dismutase; superoxide dismutase complement(26792..27421) Rickettsia peacockii str. Rustic 7942900 YP_002916086.1 CDS RPR_00180 NC_012730.1 27592 28872 R COG0285 Folylpolyglutamate synthase; folylpolyglutamate synthase complement(27592..28872) Rickettsia peacockii str. Rustic 7942901 YP_002916087.1 CDS RPR_00200 NC_012730.1 29684 30436 D COG4285 Uncharacterized conserved protein; putative N-terminal of biotin-protein ligase 29684..30436 Rickettsia peacockii str. Rustic 7942902 YP_002916088.1 CDS RPR_00205 NC_012730.1 30548 31216 R COG0625 Glutathione S-transferase; glutathione S-transferase family protein complement(30548..31216) Rickettsia peacockii str. Rustic 7942903 YP_002916089.1 CDS RPR_00210 NC_012730.1 32147 34783 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 32147..34783 Rickettsia peacockii str. Rustic 7942904 YP_002916090.1 CDS RPR_00215 NC_012730.1 35046 36854 D hypothetical protein 35046..36854 Rickettsia peacockii str. Rustic 7942905 YP_002916091.1 CDS RPR_00220 NC_012730.1 37090 37785 D COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; hypothetical protein 37090..37785 Rickettsia peacockii str. Rustic 7942906 YP_002916092.1 CDS RPR_00225 NC_012730.1 37786 38190 R COG4113 Predicted nucleic acid-binding protein, contains PIN domain; toxin of toxin-antitoxin system complement(37786..38190) Rickettsia peacockii str. Rustic 7942907 YP_002916093.1 CDS RPR_00230 NC_012730.1 38194 38448 R COG4118 Antitoxin of toxin-antitoxin stability system; hypothetical protein complement(38194..38448) Rickettsia peacockii str. Rustic 7942908 YP_002916094.1 CDS RPR_00235 NC_012730.1 38659 39210 R COG0242 N-formylmethionyl-tRNA deformylase; polypeptide deformylase complement(38659..39210) Rickettsia peacockii str. Rustic 7942909 YP_002916095.1 CDS RPR_00240 NC_012730.1 39503 40225 R COG1496 Uncharacterized conserved protein; putative cytoplasmic protein complement(39503..40225) Rickettsia peacockii str. Rustic 7942910 YP_002916096.1 CDS RPR_00245 NC_012730.1 40224 41054 D IPR014746 Glutamine synthetase/guanido kinase, catalytic region; Glutamine synthetase/guanido kinase, catalytic region 40224..41054 Rickettsia peacockii str. Rustic 7942911 YP_002916097.1 CDS RPR_00250 NC_012730.1 41204 42031 R COG1295 Predicted membrane protein; ribonuclease BN, putative complement(41204..42031) Rickettsia peacockii str. Rustic 7942912 YP_002916098.1 CDS RPR_00255 NC_012730.1 42565 42942 D COG1396 Predicted transcriptional regulators; transcriptional regulator 42565..42942 Rickettsia peacockii str. Rustic 7942913 YP_002916099.1 CDS RPR_00260 NC_012730.1 43061 46117 R antigenic heat-stable 120 kDa protein (cell surface protein Sca4) complement(43061..46117) Rickettsia peacockii str. Rustic 7942914 YP_002916100.1 CDS RPR_00265 NC_012730.1 46410 47945 R COG3202 ATP/ADP translocase; ADP,ATP carrier protein complement(46410..47945) Rickettsia peacockii str. Rustic 7942915 YP_002916101.1 CDS truB NC_012730.1 48030 49067 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; proteins in this cluster have Rickettsial repeat elements (RPE) inserts; tRNA pseudouridine synthase B 48030..49067 Rickettsia peacockii str. Rustic 7942916 YP_002916102.1 CDS rpsO NC_012730.1 49103 49378 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 49103..49378 Rickettsia peacockii str. Rustic 7942917 YP_002916103.1 CDS RPR_00280 NC_012730.1 49526 51772 D COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); polynucleotide phosphorylase/polyadenylase 49526..51772 Rickettsia peacockii str. Rustic 7942918 YP_002916104.1 CDS RPR_00285 NC_012730.1 51972 52931 D COG0794 Predicted sugar phosphate isomerase involved in capsule formation; arabinose-5-phosphate isomerase 51972..52931 Rickettsia peacockii str. Rustic 7942919 YP_002916105.1 CDS RPR_00290 NC_012730.1 52937 53533 D COG5375 Uncharacterized protein conserved in bacteria; hypothetical protein 52937..53533 Rickettsia peacockii str. Rustic 7942920 YP_002916106.1 CDS RPR_00295 NC_012730.1 53577 54086 D COG1934 Uncharacterized protein conserved in bacteria; hypothetical protein 53577..54086 Rickettsia peacockii str. Rustic 7942921 YP_002916107.1 CDS RPR_00300 NC_012730.1 54269 54991 D COG1137 ABC-type (unclassified) transport system, ATPase component; ABC transporter ATP-binding protein 54269..54991 Rickettsia peacockii str. Rustic 7942922 YP_002916108.1 CDS RPR_00310 NC_012730.1 55162 56550 D COG1109 Phosphomannomutase; phosphomannomutase 55162..56550 Rickettsia peacockii str. Rustic 7942923 YP_002916109.1 CDS RPR_00315 NC_012730.1 56621 56947 D hypothetical protein 56621..56947 Rickettsia peacockii str. Rustic 7942924 YP_002916110.1 CDS miaA NC_012730.1 57110 58174 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 57110..58174 Rickettsia peacockii str. Rustic 7942925 YP_002916111.1 CDS RPR_00340 NC_012730.1 60728 63106 R truncated homolog of RrIowa_0780; hypothetical protein complement(60728..63106) Rickettsia peacockii str. Rustic 7942926 YP_002916112.1 CDS nrdF NC_012730.1 63254 64240 R B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta complement(63254..64240) Rickettsia peacockii str. Rustic 7942159 YP_002916113.1 CDS RPR_00365 NC_012730.1 65101 66924 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(65101..66924) Rickettsia peacockii str. Rustic 7942927 YP_002916114.1 CDS RPR_00370 NC_012730.1 67341 67592 R COG3397 Uncharacterized protein conserved in bacteria; chitin binding domain-containing protein complement(67341..67592) Rickettsia peacockii str. Rustic 7942928 YP_002916115.1 CDS RPR_00375 NC_012730.1 67651 67968 R hypothetical protein complement(67651..67968) Rickettsia peacockii str. Rustic 7942929 YP_002916116.1 CDS RPR_00380 NC_012730.1 68116 68592 R COG5430 Uncharacterized secreted protein; hypothetical protein complement(68116..68592) Rickettsia peacockii str. Rustic 7942930 YP_002916117.1 CDS RPR_00420 NC_012730.1 71222 71536 R COG3121 P pilus assembly protein, chaperone PapD; hypothetical protein complement(71222..71536) Rickettsia peacockii str. Rustic 7942931 YP_002916118.1 CDS RPR_00425 NC_012730.1 71646 71846 R COG5430 Uncharacterized secreted protein; protein U precursor complement(71646..71846) Rickettsia peacockii str. Rustic 7942932 YP_002916119.1 CDS RPR_00435 NC_012730.1 72660 73682 D COG0492 Thioredoxin reductase; thioredoxin reductase 72660..73682 Rickettsia peacockii str. Rustic 7942933 YP_002916120.1 CDS RPR_00440 NC_012730.1 73832 74926 D COG2801 Transposase and inactivated derivatives; transposase ISRpe1 73832..74926 Rickettsia peacockii str. Rustic 7942934 YP_002916121.1 CDS RPR_00445 NC_012730.1 75015 75881 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 75015..75881 Rickettsia peacockii str. Rustic 7942935 YP_002916122.1 CDS RPR_00450 NC_012730.1 75912 76427 R COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily; carbonic anhydrase complement(75912..76427) Rickettsia peacockii str. Rustic 7942936 YP_002916123.1 CDS RPR_00455 NC_012730.1 76427 77005 R COG1544 Ribosome-associated protein Y (PSrp-1); ribosome-associated factor Y complement(76427..77005) Rickettsia peacockii str. Rustic 7942937 YP_002916124.1 CDS RPR_00460 NC_012730.1 77122 77430 R hypothetical protein complement(77122..77430) Rickettsia peacockii str. Rustic 7942938 YP_002916125.1 CDS RPR_00490 NC_012730.1 80774 83110 R COG0466 ATP-dependent Lon protease, bacterial type; ATP-dependent endopeptidase Lon complement(80774..83110) Rickettsia peacockii str. Rustic 7942940 YP_002916126.1 CDS RPR_00495 NC_012730.1 83196 84227 D catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 83196..84227 Rickettsia peacockii str. Rustic 7942941 YP_002916127.1 CDS RPR_00505 NC_012730.1 84662 85756 R COG2801 Transposase and inactivated derivatives; transposase ISRpe1 complement(84662..85756) Rickettsia peacockii str. Rustic 7942942 YP_002916128.1 CDS RPR_00515 NC_012730.1 86384 86545 R hypothetical protein complement(86384..86545) Rickettsia peacockii str. Rustic 7942943 YP_002916129.1 CDS RPR_00520 NC_012730.1 86661 87266 R hypothetical protein complement(86661..87266) Rickettsia peacockii str. Rustic 7942944 YP_002916130.1 CDS RPR_00525 NC_012730.1 87332 89293 R COG0210 Superfamily I DNA and RNA helicases; DNA helicase II complement(87332..89293) Rickettsia peacockii str. Rustic 7942945 YP_002916131.1 CDS RPR_00530 NC_012730.1 89371 90216 R COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyl transferase complement(89371..90216) Rickettsia peacockii str. Rustic 7942946 YP_002916132.1 CDS RPR_00535 NC_012730.1 90209 90556 R hypothetical protein complement(90209..90556) Rickettsia peacockii str. Rustic 7942947 YP_002916133.1 CDS RPR_00540 NC_012730.1 90724 92133 R COG1012 NAD-dependent aldehyde dehydrogenases; succinate-semialdehyde dehydrogenase (NADP+) complement(90724..92133) Rickettsia peacockii str. Rustic 7942948 YP_002916134.1 CDS RPR_00545 NC_012730.1 92258 92410 R hypothetical protein complement(92258..92410) Rickettsia peacockii str. Rustic 7942949 YP_002916135.1 CDS RPR_00550 NC_012730.1 92519 92746 R hypothetical protein complement(92519..92746) Rickettsia peacockii str. Rustic 7942950 YP_002916136.1 CDS RPR_00555 NC_012730.1 92808 93104 R hypothetical protein complement(92808..93104) Rickettsia peacockii str. Rustic 7942951 YP_002916137.1 CDS RPR_00560 NC_012730.1 93324 94256 R COG0492 Thioredoxin reductase; thioredoxin reductase complement(93324..94256) Rickettsia peacockii str. Rustic 7942952 YP_002916138.1 CDS RPR_00565 NC_012730.1 94458 95330 R COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase complement(94458..95330) Rickettsia peacockii str. Rustic 7942953 YP_002916139.1 CDS RPR_00570 NC_012730.1 95399 96328 R COG0679 Predicted permeases; permease complement(95399..96328) Rickettsia peacockii str. Rustic 7942954 YP_002916140.1 CDS RPR_00585 NC_012730.1 97778 99460 R COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily; hypothetical protein complement(97778..99460) Rickettsia peacockii str. Rustic 7942955 YP_002916141.1 CDS ppnK NC_012730.1 99547 100314 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 99547..100314 Rickettsia peacockii str. Rustic 7942956 YP_002916142.1 CDS recR NC_012730.1 102192 102797 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(102192..102797) Rickettsia peacockii str. Rustic 7942957 YP_002916143.1 CDS RPR_00605 NC_012730.1 102955 103476 R COG1714 Predicted membrane protein/domain; hypothetical protein complement(102955..103476) Rickettsia peacockii str. Rustic 7942958 YP_002916144.1 CDS RPR_00610 NC_012730.1 103619 104053 D COG1238 Predicted membrane protein; hypothetical protein 103619..104053 Rickettsia peacockii str. Rustic 7942959 YP_002916145.1 CDS rbfA NC_012730.1 104050 104412 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 104050..104412 Rickettsia peacockii str. Rustic 7942960 YP_002916146.1 CDS RPR_00625 NC_012730.1 105840 106475 D COG4395 Uncharacterized protein conserved in bacteria; hypothetical protein 105840..106475 Rickettsia peacockii str. Rustic 7942961 YP_002916147.1 CDS RPR_00630 NC_012730.1 106563 108611 D COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; acylamino-acid-releasing enzyme 106563..108611 Rickettsia peacockii str. Rustic 7941998 YP_002916148.1 CDS RPR_00645 NC_012730.1 109389 109643 D COG2002 Regulators of stationary/sporulation gene expression; hypothetical protein 109389..109643 Rickettsia peacockii str. Rustic 7942331 YP_002916149.1 CDS RPR_00650 NC_012730.1 109630 110019 D COG5611 Predicted nucleic-acid-binding protein, contains PIN domain; hypothetical protein 109630..110019 Rickettsia peacockii str. Rustic 7942332 YP_002916150.1 CDS sucC NC_012730.1 110052 111212 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 110052..111212 Rickettsia peacockii str. Rustic 7942333 YP_002916151.1 CDS RPR_00660 NC_012730.1 111388 112266 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 111388..112266 Rickettsia peacockii str. Rustic 7942334 YP_002916152.1 CDS RPR_00665 NC_012730.1 112278 113372 R COG2801 Transposase and inactivated derivatives; transposase ISRpe1 complement(112278..113372) Rickettsia peacockii str. Rustic 7942335 YP_002916153.1 CDS RPR_00670 NC_012730.1 115478 116854 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 115478..116854 Rickettsia peacockii str. Rustic 7942336 YP_002916154.1 CDS RPR_00675 NC_012730.1 116841 118382 R hypothetical protein complement(116841..118382) Rickettsia peacockii str. Rustic 7942337 YP_002916155.1 CDS RPR_00680 NC_012730.1 118447 119463 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(118447..119463) Rickettsia peacockii str. Rustic 7942338 YP_002916156.1 CDS RPR_00685 NC_012730.1 119677 120573 D hypothetical protein 119677..120573 Rickettsia peacockii str. Rustic 7942339 YP_002916157.1 CDS RPR_00690 NC_012730.1 120659 122605 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(120659..122605) Rickettsia peacockii str. Rustic 7942340 YP_002916158.1 CDS RPR_00695 NC_012730.1 122667 123242 D COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; aromatic acid decarboxylase 122667..123242 Rickettsia peacockii str. Rustic 7942341 YP_002916159.1 CDS RPR_00705 NC_012730.1 123609 125093 D unwinds double stranded DNA; replicative DNA helicase 123609..125093 Rickettsia peacockii str. Rustic 7942342 YP_002916160.1 CDS RPR_00710 NC_012730.1 125254 125463 R hypothetical protein complement(125254..125463) Rickettsia peacockii str. Rustic 7942343 YP_002916161.1 CDS RPR_00735 NC_012730.1 126964 127656 D COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; ribosomal large subunit pseudouridine synthase B 126964..127656 Rickettsia peacockii str. Rustic 7942344 YP_002916162.1 CDS RPR_00740 NC_012730.1 127703 130582 D COG1357 Uncharacterized low-complexity proteins; hypothetical protein 127703..130582 Rickettsia peacockii str. Rustic 7942345 YP_002916163.1 CDS RPR_00745 NC_012730.1 130587 131324 D COG0742 N6-adenine-specific methylase; hypothetical protein 130587..131324 Rickettsia peacockii str. Rustic 7942346 YP_002916164.1 CDS RPR_00750 NC_012730.1 131445 132779 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 131445..132779 Rickettsia peacockii str. Rustic 7942347 YP_002916165.1 CDS RPR_00755 NC_012730.1 132776 133090 D hypothetical protein 132776..133090 Rickettsia peacockii str. Rustic 7942348 YP_002916166.1 CDS recO NC_012730.1 133213 133926 D involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 133213..133926 Rickettsia peacockii str. Rustic 7942349 YP_002916167.1 CDS RPR_00770 NC_012730.1 134478 135170 D COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone; glycoprotease family protein 134478..135170 Rickettsia peacockii str. Rustic 7942350 YP_002916168.1 CDS RPR_00775 NC_012730.1 135227 136489 R hypothetical protein complement(135227..136489) Rickettsia peacockii str. Rustic 7942351 YP_002916169.1 CDS infB NC_012730.1 136860 139355 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(136860..139355) Rickettsia peacockii str. Rustic 7942352 YP_002916170.1 CDS nusA NC_012730.1 139586 141097 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(139586..141097) Rickettsia peacockii str. Rustic 7942353 YP_002916171.1 CDS RPR_00790 NC_012730.1 141176 142270 R COG2801 Transposase and inactivated derivatives; transposase ISRpe1 complement(141176..142270) Rickettsia peacockii str. Rustic 7942354 YP_002916172.1 CDS RPR_00800 NC_012730.1 142512 143930 R F pilus assembly protein TraB complement(142512..143930) Rickettsia peacockii str. Rustic 7942355 YP_002916173.1 CDS RPR_00805 NC_012730.1 143956 144288 R hypothetical protein complement(143956..144288) Rickettsia peacockii str. Rustic 7942356 YP_002916174.1 CDS RPR_00810 NC_012730.1 144248 144703 R hypothetical protein complement(144248..144703) Rickettsia peacockii str. Rustic 7942357 YP_002916175.1 CDS RPR_00815 NC_012730.1 144707 145258 R conjugative transfer protein TraE complement(144707..145258) Rickettsia peacockii str. Rustic 7942358 YP_002916176.1 CDS RPR_00820 NC_012730.1 145258 145566 R hypothetical protein complement(145258..145566) Rickettsia peacockii str. Rustic 7942359 YP_002916177.1 CDS RPR_00830 NC_012730.1 145974 147758 R leucine-rich repeat-containing protein complement(145974..147758) Rickettsia peacockii str. Rustic 7942360 YP_002916178.1 CDS RPR_00900 NC_012730.1 152605 152871 R hypothetical protein complement(152605..152871) Rickettsia peacockii str. Rustic 7942362 YP_002916179.1 CDS RPR_00905 NC_012730.1 152911 153387 R ankyrin repeat-containing protein complement(152911..153387) Rickettsia peacockii str. Rustic 7942363 YP_002916180.1 CDS RPR_00910 NC_012730.1 153687 154706 D COG0042 tRNA-dihydrouridine synthase; nifR3-like protein 153687..154706 Rickettsia peacockii str. Rustic 7942365 YP_002916181.1 CDS RPR_00915 NC_012730.1 154724 155413 D hypothetical protein 154724..155413 Rickettsia peacockii str. Rustic 7942366 YP_002916182.1 CDS RPR_00930 NC_012730.1 156571 157026 R ATPase YjeE, predicted to have essential role in cell wall biosynthesis; ATPase YjeE, truncated complement(156571..157026) Rickettsia peacockii str. Rustic 7942367 YP_002916183.1 CDS RPR_00935 NC_012730.1 157014 157967 R COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; zinc/manganese ABC transporter substrate binding protein complement(157014..157967) Rickettsia peacockii str. Rustic 7942368 YP_002916184.1 CDS RPR_00940 NC_012730.1 158047 159273 R COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; poly(A) polymerase complement(158047..159273) Rickettsia peacockii str. Rustic 7942369 YP_002916185.1 CDS RPR_00950 NC_012730.1 160072 160809 R COG0658 Predicted membrane metal-binding protein; DNA translocation competence protein complement(160072..160809) Rickettsia peacockii str. Rustic 7942370 YP_002916186.1 CDS RPR_00960 NC_012730.1 161183 162277 R COG2801 Transposase and inactivated derivatives; transposase ISRpe1 complement(161183..162277) Rickettsia peacockii str. Rustic 7942371 YP_002916187.1 CDS RPR_00965 NC_012730.1 162330 163091 R COG1189 Predicted rRNA methylase; hemolysin complement(162330..163091) Rickettsia peacockii str. Rustic 7942372 YP_002916188.1 CDS RPR_00970 NC_012730.1 163250 164485 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(163250..164485) Rickettsia peacockii str. Rustic 7942373 YP_002916189.1 CDS RPR_01045 NC_012730.1 171283 171777 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(171283..171777) Rickettsia peacockii str. Rustic 7942376 YP_002916190.1 CDS RPR_01050 NC_012730.1 171777 172250 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.; F0F1 ATP synthase subunit B' complement(171777..172250) Rickettsia peacockii str. Rustic 7942377 YP_002916191.1 CDS RPR_01055 NC_012730.1 172269 172493 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(172269..172493) Rickettsia peacockii str. Rustic 7942378 YP_002916192.1 CDS RPR_01060 NC_012730.1 172689 173417 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(172689..173417) Rickettsia peacockii str. Rustic 7942379 YP_002916193.1 CDS RPR_01065 NC_012730.1 173422 173685 R COG5336 Uncharacterized protein conserved in bacteria; hypothetical protein complement(173422..173685) Rickettsia peacockii str. Rustic 7942380 YP_002916194.1 CDS RPR_01070 NC_012730.1 173796 174629 R COG1651 Protein-disulfide isomerase; Periplasmic thiol:disulfide interchange protein DsbA complement(173796..174629) Rickettsia peacockii str. Rustic 7942381 YP_002916195.1 CDS RPR_01075 NC_012730.1 174793 175314 D COG1329 Transcriptional regulators, similar to M. xanthus CarD; carD-like transcriptional regulator 174793..175314 Rickettsia peacockii str. Rustic 7942382 YP_002916196.1 CDS RPR_01080 NC_012730.1 175561 177165 R COG0500 SAM-dependent methyltransferases; hypothetical protein complement(175561..177165) Rickettsia peacockii str. Rustic 7942383 YP_002916197.1 CDS recF NC_012730.1 177598 178680 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F complement(177598..178680) Rickettsia peacockii str. Rustic 7942384 YP_002916198.1 CDS RPR_01100 NC_012730.1 179513 180607 R COG2801 Transposase and inactivated derivatives; transposase ISRpe1 complement(179513..180607) Rickettsia peacockii str. Rustic 7942385 YP_002916199.1 CDS RPR_01120 NC_012730.1 182576 183247 R hypothetical protein complement(182576..183247) Rickettsia peacockii str. Rustic 7942386 YP_002916200.1 CDS RPR_01165 NC_012730.1 186760 187329 R COG1678 Putative transcriptional regulator; hypothetical protein complement(186760..187329) Rickettsia peacockii str. Rustic 7942387 YP_002916201.1 CDS RPR_01170 NC_012730.1 187395 188063 D COG1286 Uncharacterized membrane protein, required for colicin V production; hypothetical protein 187395..188063 Rickettsia peacockii str. Rustic 7942388 YP_002916202.1 CDS RPR_01180 NC_012730.1 188949 190010 D hypothetical protein 188949..190010 Rickettsia peacockii str. Rustic 7942389 YP_002916203.1 CDS RPR_01185 NC_012730.1 190061 190744 R COG0293 23S rRNA methylase; cell division protein ftsJ complement(190061..190744) Rickettsia peacockii str. Rustic 7942390 YP_002916204.1 CDS nusB NC_012730.1 190879 191349 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(190879..191349) Rickettsia peacockii str. Rustic 7942391 YP_002916205.1 CDS RPR_01195 NC_012730.1 191631 192704 D COG0750 Predicted membrane-associated Zn-dependent proteases 1; M50 family membrane endopeptidase 191631..192704 Rickettsia peacockii str. Rustic 7942392 YP_002916206.1 CDS RPR_01200 NC_012730.1 192945 195251 D COG4775 Outer membrane protein/protective antigen OMA87; outer membrane protein assembly factor 192945..195251 Rickettsia peacockii str. Rustic 7942393 YP_002916207.1 CDS RPR_01205 NC_012730.1 195949 196539 D hypothetical protein 195949..196539 Rickettsia peacockii str. Rustic 7942395 YP_002916208.1 CDS RPR_01225 NC_012730.1 197595 199154 D COG0477 Permeases of the major facilitator superfamily; multidrug resistance protein B 197595..199154 Rickettsia peacockii str. Rustic 7942396 YP_002916209.1 CDS RPR_01230 NC_012730.1 199138 199461 D subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit E 199138..199461 Rickettsia peacockii str. Rustic 7942397 YP_002916210.1 CDS pyrH NC_012730.1 199470 200198 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 199470..200198 Rickettsia peacockii str. Rustic 7942398 YP_002916211.1 CDS frr NC_012730.1 200486 201046 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 200486..201046 Rickettsia peacockii str. Rustic 7942399 YP_002916212.1 CDS gatC NC_012730.1 201828 202130 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 201828..202130 Rickettsia peacockii str. Rustic 7942400 YP_002916213.1 CDS gatA NC_012730.1 202133 203614 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 202133..203614 Rickettsia peacockii str. Rustic 7942401 YP_002916214.1 CDS gatB NC_012730.1 203617 205068 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 203617..205068 Rickettsia peacockii str. Rustic 7942402 YP_002916215.1 CDS RPR_01265 NC_012730.1 205325 206050 D COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; glutamine-binding protein 205325..206050 Rickettsia peacockii str. Rustic 7942403 YP_002916216.1 CDS RPR_01270 NC_012730.1 206035 206514 D COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family; flavoprotein oxygenase DIM6/NTAB family protein 206035..206514 Rickettsia peacockii str. Rustic 7942404 YP_002916217.1 CDS RPR_01275 NC_012730.1 206795 207514 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 206795..207514 Rickettsia peacockii str. Rustic 7942405 YP_002916218.1 CDS RPR_01280 NC_012730.1 207600 208310 D COG0670 Integral membrane protein, interacts with FtsH; stabilizing membrane protein 207600..208310 Rickettsia peacockii str. Rustic 7942406 YP_002916219.1 CDS RPR_01285 NC_012730.1 208694 210808 D hypothetical protein 208694..210808 Rickettsia peacockii str. Rustic 7942407 YP_002916220.1 CDS RPR_01290 NC_012730.1 210966 212060 D COG2801 Transposase and inactivated derivatives; transposase ISRpe1 210966..212060 Rickettsia peacockii str. Rustic 7942408 YP_002916221.1 CDS RPR_01315 NC_012730.1 214174 219141 R COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain; outer membrane protein B (cell surface antigen sca5) complement(214174..219141) Rickettsia peacockii str. Rustic 7942409 YP_002916222.1 CDS RPR_01320 NC_012730.1 219535 220140 R COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein complement(219535..220140) Rickettsia peacockii str. Rustic 7942410 YP_002916223.1 CDS RPR_01325 NC_012730.1 220505 221449 R COG1472 Beta-glucosidase-related glycosidases; putative beta-glucosidase complement(220505..221449) Rickettsia peacockii str. Rustic 7942411 YP_002916224.1 CDS himA NC_012730.1 221998 222285 R COG0776 Bacterial nucleoid DNA-binding protein; integration host factor alpha-subunit complement(221998..222285) Rickettsia peacockii str. Rustic 7942082 YP_002916225.1 CDS RPR_01345 NC_012730.1 223379 223849 D COG1225 Peroxiredoxin; thioredoxin peroxidase 223379..223849 Rickettsia peacockii str. Rustic 7942493 YP_002916226.1 CDS RPR_01350 NC_012730.1 223969 224841 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(223969..224841) Rickettsia peacockii str. Rustic 7942494 YP_002916227.1 CDS lpxK NC_012730.1 224816 225781 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(224816..225781) Rickettsia peacockii str. Rustic 7942495 YP_002916228.1 CDS RPR_01360 NC_012730.1 225785 226639 R COG0739 Membrane proteins related to metalloendopeptidases; putative periplasmic protein complement(225785..226639) Rickettsia peacockii str. Rustic 7942496 YP_002916229.1 CDS RPR_01365 NC_012730.1 226639 227361 R COG2961 Protein involved in catabolism of external DNA; protein involved in external DNA uptake complement(226639..227361) Rickettsia peacockii str. Rustic 7942497 YP_002916230.1 CDS ligA NC_012730.1 228071 230140 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(228071..230140) Rickettsia peacockii str. Rustic 7942498 YP_002916231.1 CDS tgt NC_012730.1 230426 231511 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(230426..231511) Rickettsia peacockii str. Rustic 7942499 YP_002916232.1 CDS RPR_01425 NC_012730.1 234436 235023 D hypothetical protein 234436..235023 Rickettsia peacockii str. Rustic 7942500 YP_002916233.1 CDS RPR_01430 NC_012730.1 235202 235654 R hypothetical protein complement(235202..235654) Rickettsia peacockii str. Rustic 7942501 YP_002916234.1 CDS RPR_01445 NC_012730.1 236111 236560 R COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component; toluene transport system protein complement(236111..236560) Rickettsia peacockii str. Rustic 7942502 YP_002916235.1 CDS RPR_01450 NC_012730.1 236585 236884 R COG3761 NADH:ubiquinone oxidoreductase 17.2 kDa subunit; hypothetical protein complement(236585..236884) Rickettsia peacockii str. Rustic 7942503 YP_002916236.1 CDS rnhA NC_012730.1 236872 237339 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(236872..237339) Rickettsia peacockii str. Rustic 7942504 YP_002916237.1 CDS RPR_01460 NC_012730.1 237339 237812 R COG3814 Uncharacterized protein conserved in bacteria; hypothetical protein complement(237339..237812) Rickettsia peacockii str. Rustic 7942505 YP_002916238.1 CDS RPR_01465 NC_012730.1 238591 239403 D COG3494 Uncharacterized protein conserved in bacteria; hypothetical protein 238591..239403 Rickettsia peacockii str. Rustic 7942506 YP_002916239.1 CDS coaE NC_012730.1 239397 239972 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 239397..239972 Rickettsia peacockii str. Rustic 7942507 YP_002916240.1 CDS RPR_01475 NC_012730.1 239960 240649 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 239960..240649 Rickettsia peacockii str. Rustic 7942508 YP_002916241.1 CDS RPR_01480 NC_012730.1 240776 241498 D COG3346 Uncharacterized conserved protein; surfeit locus protein 1 240776..241498 Rickettsia peacockii str. Rustic 7942509 YP_002916242.1 CDS RPR_01485 NC_012730.1 241554 244022 D COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); ATP-dependent helicase 241554..244022 Rickettsia peacockii str. Rustic 7942510 YP_002916243.1 CDS RPR_01490 NC_012730.1 244528 245070 R hypothetical protein complement(244528..245070) Rickettsia peacockii str. Rustic 7942511 YP_002916244.1 CDS RPR_01495 NC_012730.1 245279 246223 D COG0331 (acyl-carrier-protein) S-malonyltransferase; malonyl CoA-ACP transacylase 245279..246223 Rickettsia peacockii str. Rustic 7942512 YP_002916245.1 CDS RPR_01500 NC_012730.1 246294 247388 R COG2801 Transposase and inactivated derivatives; transposase ISRpe1 complement(246294..247388) Rickettsia peacockii str. Rustic 7942513 YP_002916246.1 CDS RPR_01580 NC_012730.1 253944 255038 D COG2801 Transposase and inactivated derivatives; transposase ISRpe1 253944..255038 Rickettsia peacockii str. Rustic 7942515 YP_002916247.1 CDS RPR_01590 NC_012730.1 255648 256700 R COG1566 Multidrug resistance efflux pump; multidrug resistance protein A complement(255648..256700) Rickettsia peacockii str. Rustic 7942516 YP_002916248.1 CDS RPR_01595 NC_012730.1 256709 257473 R COG1183 Phosphatidylserine synthase; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(256709..257473) Rickettsia peacockii str. Rustic 7942517 YP_002916249.1 CDS RPR_01600 NC_012730.1 257735 258430 R catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase complement(257735..258430) Rickettsia peacockii str. Rustic 7942518 YP_002916250.1 CDS RPR_01605 NC_012730.1 258464 258787 R hypothetical protein complement(258464..258787) Rickettsia peacockii str. Rustic 7942519 YP_002916251.1 CDS RPR_01610 NC_012730.1 258859 259605 R COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family; extragenic suppressor protein suhB complement(258859..259605) Rickettsia peacockii str. Rustic 7942520 YP_002916252.1 CDS RPR_01615 NC_012730.1 259833 260399 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(259833..260399) Rickettsia peacockii str. Rustic 7942521 YP_002916253.1 CDS pleD NC_012730.1 260475 261827 D involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; response regulator PleD 260475..261827 Rickettsia peacockii str. Rustic 7942522 YP_002916254.1 CDS RPR_01625 NC_012730.1 261852 262337 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 261852..262337 Rickettsia peacockii str. Rustic 7942523 YP_002916255.1 CDS RPR_01640 NC_012730.1 263186 263515 R COG2154 Pterin-4a-carbinolamine dehydratase; putative pterin-4-alpha-carbinolamine dehydratase (PHS) complement(263186..263515) Rickettsia peacockii str. Rustic 7942524 YP_002916256.1 CDS rpsI NC_012730.1 265002 265481 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(265002..265481) Rickettsia peacockii str. Rustic 7942526 YP_002916257.1 CDS rplM NC_012730.1 265488 265955 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(265488..265955) Rickettsia peacockii str. Rustic 7942527 YP_002916258.1 CDS RPR_01665 NC_012730.1 266048 267292 R COG1520 FOG: WD40-like repeat; PQQ repeat-containing protein complement(266048..267292) Rickettsia peacockii str. Rustic 7942528 YP_002916259.1 CDS RPR_01670 NC_012730.1 267315 267977 R hypothetical protein complement(267315..267977) Rickettsia peacockii str. Rustic 7942529 YP_002916260.1 CDS RPR_01675 NC_012730.1 267990 268727 R COG1729 Uncharacterized protein conserved in bacteria; Tol system periplasmic component complement(267990..268727) Rickettsia peacockii str. Rustic 7942530 YP_002916261.1 CDS RPR_01680 NC_012730.1 268793 270286 R COG0642 Signal transduction histidine kinase; sensory transduction protein kinase complement(268793..270286) Rickettsia peacockii str. Rustic 7942531 YP_002916262.1 CDS RPR_01685 NC_012730.1 270501 271871 R COG0793 Periplasmic protease; tail-specific protease precursor complement(270501..271871) Rickettsia peacockii str. Rustic 7942532 YP_002916263.1 CDS RPR_01690 NC_012730.1 272000 273988 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(272000..273988) Rickettsia peacockii str. Rustic 7942533 YP_002916264.1 CDS RPR_01695 NC_012730.1 274198 275919 R COG0666 FOG: Ankyrin repeat; hypothetical protein complement(274198..275919) Rickettsia peacockii str. Rustic 7942534 YP_002916265.1 CDS RPR_01700 NC_012730.1 275968 276117 R hypothetical protein complement(275968..276117) Rickettsia peacockii str. Rustic 7942535 YP_002916266.1 CDS RPR_01705 NC_012730.1 276126 276524 R COG3827 Uncharacterized protein conserved in bacteria; hypothetical protein complement(276126..276524) Rickettsia peacockii str. Rustic 7942536 YP_002916267.1 CDS RPR_01710 NC_012730.1 276526 277902 R COG1538 Outer membrane protein; type I secretion outer membrane protein, TolC precursor complement(276526..277902) Rickettsia peacockii str. Rustic 7942537 YP_002916268.1 CDS RPR_01715 NC_012730.1 278232 278447 D hypothetical protein 278232..278447 Rickettsia peacockii str. Rustic 7942538 YP_002916269.1 CDS RPR_01725 NC_012730.1 278652 279116 D hypothetical protein 278652..279116 Rickettsia peacockii str. Rustic 7942539 YP_002916270.1 CDS RPR_01735 NC_012730.1 279313 279729 D hypothetical protein 279313..279729 Rickettsia peacockii str. Rustic 7942540 YP_002916271.1 CDS RPR_01775 NC_012730.1 282774 282998 R hypothetical protein complement(282774..282998) Rickettsia peacockii str. Rustic 7942541 YP_002916272.1 CDS thrS NC_012730.1 283086 284993 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(283086..284993) Rickettsia peacockii str. Rustic 7942542 YP_002916273.1 CDS RPR_01785 NC_012730.1 285109 286677 R hypothetical protein complement(285109..286677) Rickettsia peacockii str. Rustic 7942543 YP_002916274.1 CDS RPR_01790 NC_012730.1 286897 287607 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(286897..287607) Rickettsia peacockii str. Rustic 7942544 YP_002916275.1 CDS RPR_01795 NC_012730.1 287761 288999 R COG0612 Predicted Zn-dependent peptidases; similar to mitochondrial protease; protease complement(287761..288999) Rickettsia peacockii str. Rustic 7942545 YP_002916276.1 CDS RPR_01800 NC_012730.1 289076 289924 R COG0463 Glycosyltransferases involved in cell wall biogenesis; beta 1,4 glucosyltransferase complement(289076..289924) Rickettsia peacockii str. Rustic 7942546 YP_002916277.1 CDS RPR_01805 NC_012730.1 289917 290174 R COG4115 Uncharacterized protein conserved in bacteria; Putative toxin of toxin-antitoxin (TA) system complement(289917..290174) Rickettsia peacockii str. Rustic 7942547 YP_002916278.1 CDS RPR_01810 NC_012730.1 290185 290427 R COG2161 Antitoxin of toxin-antitoxin stability system; RelB complement(290185..290427) Rickettsia peacockii str. Rustic 7942548 YP_002916279.1 CDS RPR_01815 NC_012730.1 290629 291648 R COG1294 Cytochrome bd-type quinol oxidase, subunit 2; cytochrome d ubiquinol oxidase subunit II complement(290629..291648) Rickettsia peacockii str. Rustic 7942549 YP_002916280.1 CDS RPR_01820 NC_012730.1 291656 293026 R COG1271 Cytochrome bd-type quinol oxidase, subunit 1; cyanide-insensitive cytochrome bd-type quinol oxidase subunit I complement(291656..293026) Rickettsia peacockii str. Rustic 7942550 YP_002916281.1 CDS RPR_01825 NC_012730.1 293181 293453 R hypothetical protein complement(293181..293453) Rickettsia peacockii str. Rustic 7942551 YP_002916282.1 CDS RPR_01830 NC_012730.1 293634 295403 D COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug resistance ABC transporter ATP-binding and permease protein 293634..295403 Rickettsia peacockii str. Rustic 7942552 YP_002916283.1 CDS RPR_01855 NC_012730.1 296827 297924 D COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); S-adenosylmethionine:tRNA ribosyltransferase-isomerase 296827..297924 Rickettsia peacockii str. Rustic 7942553 YP_002916284.1 CDS RPR_01870 NC_012730.1 299386 300480 R COG2801 Transposase and inactivated derivatives; transposase ISRpe1 complement(299386..300480) Rickettsia peacockii str. Rustic 7942554 YP_002916285.1 CDS RPR_01875 NC_012730.1 300540 301106 R COG4421 Capsular polysaccharide biosynthesis protein; hypothetical protein complement(300540..301106) Rickettsia peacockii str. Rustic 7942555 YP_002916286.1 CDS RPR_01880 NC_012730.1 304918 305334 R COG0147 Anthranilate/para-aminobenzoate synthases component I; hypothetical protein complement(304918..305334) Rickettsia peacockii str. Rustic 7942156 YP_002916287.1 CDS fmt NC_012730.1 305551 306462 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(305551..306462) Rickettsia peacockii str. Rustic 7942558 YP_002916288.1 CDS def NC_012730.1 306459 306986 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(306459..306986) Rickettsia peacockii str. Rustic 7942559 YP_002916289.1 CDS RPR_01900 NC_012730.1 307435 307620 R hypothetical protein complement(307435..307620) Rickettsia peacockii str. Rustic 7942560 YP_002916290.1 CDS RPR_01920 NC_012730.1 309641 312358 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(309641..312358) Rickettsia peacockii str. Rustic 7942561 YP_002916291.1 CDS RPR_01925 NC_012730.1 312726 312896 R hypothetical protein complement(312726..312896) Rickettsia peacockii str. Rustic 7942562 YP_002916292.1 CDS RPR_01945 NC_012730.1 315330 315638 R COG0695 Glutaredoxin and related proteins; glutaredoxin 3 complement(315330..315638) Rickettsia peacockii str. Rustic 7942563 YP_002916293.1 CDS RPR_01950 NC_012730.1 315709 317694 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 315709..317694 Rickettsia peacockii str. Rustic 7942564 YP_002916294.1 CDS rnhB NC_012730.1 317848 318414 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(317848..318414) Rickettsia peacockii str. Rustic 7942565 YP_002916295.1 CDS hscB NC_012730.1 318498 318998 D J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 318498..318998 Rickettsia peacockii str. Rustic 7942566 YP_002916296.1 CDS hscA NC_012730.1 318989 320776 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 318989..320776 Rickettsia peacockii str. Rustic 7942567 YP_002916297.1 CDS RPR_01970 NC_012730.1 320840 321178 D COG0633 Ferredoxin; ferredoxin 320840..321178 Rickettsia peacockii str. Rustic 7942568 YP_002916298.1 CDS RPR_01975 NC_012730.1 321191 322261 D hypothetical protein 321191..322261 Rickettsia peacockii str. Rustic 7942569 YP_002916299.1 CDS RPR_01980 NC_012730.1 322266 323207 D COG2358 TRAP-type uncharacterized transport system, periplasmic component; immunogenic protein 322266..323207 Rickettsia peacockii str. Rustic 7942570 YP_002916300.1 CDS RPR_01985 NC_012730.1 323217 323663 D COG0589 Universal stress protein UspA and related nucleotide-binding proteins; hypothetical protein 323217..323663 Rickettsia peacockii str. Rustic 7942571 YP_002916301.1 CDS dapD NC_012730.1 326018 326842 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(326018..326842) Rickettsia peacockii str. Rustic 7942572 YP_002916302.1 CDS RPR_02010 NC_012730.1 326918 327550 D hypothetical protein 326918..327550 Rickettsia peacockii str. Rustic 7942573 YP_002916303.1 CDS RPR_02015 NC_012730.1 327894 328253 R COG3838 Type IV secretory pathway, VirB2 components (pilins); virB2 protein complement(327894..328253) Rickettsia peacockii str. Rustic 7942656 YP_002916304.1 CDS RPR_02020 NC_012730.1 328409 329260 R COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3; cytochrome c oxidase subunit III complement(328409..329260) Rickettsia peacockii str. Rustic 7942657 YP_002916305.1 CDS RPR_02025 NC_012730.1 329801 330340 R COG2941 Ubiquinone biosynthesis protein COQ7; 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase complement(329801..330340) Rickettsia peacockii str. Rustic 7942658 YP_002916306.1 CDS holA NC_012730.1 330476 331450 R required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(330476..331450) Rickettsia peacockii str. Rustic 7942659 YP_002916307.1 CDS RPR_02035 NC_012730.1 331458 331931 R hypothetical protein complement(331458..331931) Rickettsia peacockii str. Rustic 7942660 YP_002916308.1 CDS RPR_02050 NC_012730.1 333629 335101 R COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; heat shock protease complement(333629..335101) Rickettsia peacockii str. Rustic 7942661 YP_002916309.1 CDS dnaK NC_012730.1 335186 337069 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 335186..337069 Rickettsia peacockii str. Rustic 7942662 YP_002916310.1 CDS RPR_02060 NC_012730.1 337198 338319 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 337198..338319 Rickettsia peacockii str. Rustic 7942663 YP_002916311.1 CDS RPR_02070 NC_012730.1 338861 339616 D COG4105 DNA uptake lipoprotein; ComL family lipoprotein 338861..339616 Rickettsia peacockii str. Rustic 7942664 YP_002916312.1 CDS RPR_02075 NC_012730.1 339624 341261 D COG0497 ATPase involved in DNA repair; DNA repair protein RecN 339624..341261 Rickettsia peacockii str. Rustic 7942665 YP_002916313.1 CDS RPR_02080 NC_012730.1 341438 342928 D COG2317 Zn-dependent carboxypeptidase; thermostable carboxypeptidase 341438..342928 Rickettsia peacockii str. Rustic 7942666 YP_002916314.1 CDS sucA NC_012730.1 343065 345851 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 343065..345851 Rickettsia peacockii str. Rustic 7942667 YP_002916315.1 CDS RPR_02090 NC_012730.1 346016 347203 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 346016..347203 Rickettsia peacockii str. Rustic 7942668 YP_002916316.1 CDS RPR_02095 NC_012730.1 347373 347789 D COG0720 6-pyruvoyl-tetrahydropterin synthase; hypothetical protein 347373..347789 Rickettsia peacockii str. Rustic 7942669 YP_002916317.1 CDS RPR_02100 NC_012730.1 347792 348106 D COG1324 Uncharacterized protein involved in tolerance to divalent cations; periplasmic divalent cation tolerance protein 347792..348106 Rickettsia peacockii str. Rustic 7942670 YP_002916318.1 CDS RPR_02105 NC_012730.1 348147 349346 D COG1301 Na+/H+-dicarboxylate symporters; Na+/H+-dicarboxylate symporter 348147..349346 Rickettsia peacockii str. Rustic 7942671 YP_002916319.1 CDS RPR_02120 NC_012730.1 350282 351376 R COG2801 Transposase and inactivated derivatives; transposase ISRpe1 complement(350282..351376) Rickettsia peacockii str. Rustic 7942672 YP_002916320.1 CDS RPR_02125 NC_012730.1 351451 351654 R hypothetical protein complement(351451..351654) Rickettsia peacockii str. Rustic 7942673 YP_002916321.1 CDS RPR_02130 NC_012730.1 351651 351893 R COG0271 Stress-induced morphogen (activity unknown); hypothetical protein complement(351651..351893) Rickettsia peacockii str. Rustic 7942674 YP_002916322.1 CDS RPR_02135 NC_012730.1 351957 353174 D COG2200 FOG: EAL domain; hypothetical protein 351957..353174 Rickettsia peacockii str. Rustic 7942675 YP_002916323.1 CDS murC NC_012730.1 353395 354852 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 353395..354852 Rickettsia peacockii str. Rustic 7942676 YP_002916324.1 CDS murB NC_012730.1 355075 355962 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 355075..355962 Rickettsia peacockii str. Rustic 7942677 YP_002916325.1 CDS ddl NC_012730.1 356206 357177 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 356206..357177 Rickettsia peacockii str. Rustic 7942678 YP_002916326.1 CDS RPR_02155 NC_012730.1 357174 357977 D COG1589 Cell division septal protein; cell division protein 357174..357977 Rickettsia peacockii str. Rustic 7942679 YP_002916327.1 CDS RPR_02160 NC_012730.1 358105 359340 D COG0849 Actin-like ATPase involved in cell division; cell division protein ftsA 358105..359340 Rickettsia peacockii str. Rustic 7942680 YP_002916328.1 CDS RPR_02165 NC_012730.1 359483 359953 R hypothetical protein complement(359483..359953) Rickettsia peacockii str. Rustic 7942681 YP_002916329.1 CDS RPR_02170 NC_012730.1 359943 360470 R COG3474 Cytochrome c2; cytochrome c complement(359943..360470) Rickettsia peacockii str. Rustic 7942682 YP_002916330.1 CDS RPR_02175 NC_012730.1 360584 361615 D hypothetical protein 360584..361615 Rickettsia peacockii str. Rustic 7942683 YP_002916331.1 CDS lpxC NC_012730.1 361662 362537 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(361662..362537) Rickettsia peacockii str. Rustic 7942684 YP_002916332.1 CDS RPR_02185 NC_012730.1 362895 364043 R hypothetical protein complement(362895..364043) Rickettsia peacockii str. Rustic 7942685 YP_002916333.1 CDS RPR_02190 NC_012730.1 364470 366542 D COG1530 Ribonucleases G and E; ribonuclease E 364470..366542 Rickettsia peacockii str. Rustic 7942686 YP_002916334.1 CDS RPR_02195 NC_012730.1 366835 367803 D COG1612 Uncharacterized protein required for cytochrome oxidase assembly; cytochrome c oxidase assembly protein 366835..367803 Rickettsia peacockii str. Rustic 7942687 YP_002916335.1 CDS RPR_02200 NC_012730.1 367816 368727 D COG0564 Pseudouridylate synthases, 23S RNA-specific; hypothetical protein 367816..368727 Rickettsia peacockii str. Rustic 7942688 YP_002916336.1 CDS RPR_02205 NC_012730.1 368882 370063 D COG1680 Beta-lactamase class C and other penicillin binding proteins; penicillin-binding protein 4* 368882..370063 Rickettsia peacockii str. Rustic 7942689 YP_002916337.1 CDS RPR_02210 NC_012730.1 370210 371025 D COG0708 Exonuclease III; exodeoxyribonuclease III 370210..371025 Rickettsia peacockii str. Rustic 7942690 YP_002916338.1 CDS RPR_02215 NC_012730.1 371048 372028 D COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit; pyruvate dehydrogenase e1 component, alpha subunit precursor 371048..372028 Rickettsia peacockii str. Rustic 7942691 YP_002916339.1 CDS RPR_02220 NC_012730.1 372189 373169 D catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acyltransferase within the complex. The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2); it contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase; pyruvate dehydrogenase subunit beta 372189..373169 Rickettsia peacockii str. Rustic 7942692 YP_002916340.1 CDS RPR_02225 NC_012730.1 373307 375136 R COG1217 Predicted membrane GTPase involved in stress response; GTP-binding protein complement(373307..375136) Rickettsia peacockii str. Rustic 7942693 YP_002916341.1 CDS RPR_02245 NC_012730.1 376330 376815 D COG2825 Outer membrane protein; Outer membrane protein H precursor 376330..376815 Rickettsia peacockii str. Rustic 7942694 YP_002916342.1 CDS RPR_02250 NC_012730.1 376993 378444 D catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 376993..378444 Rickettsia peacockii str. Rustic 7942695 YP_002916343.1 CDS RPR_02255 NC_012730.1 378559 378879 D subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit G 378559..378879 Rickettsia peacockii str. Rustic 7942696 YP_002916344.1 CDS RPR_02260 NC_012730.1 378943 380016 D subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit B 378943..380016 Rickettsia peacockii str. Rustic 7942697 YP_002916345.1 CDS RPR_02265 NC_012730.1 380009 380656 D heme exporter protein B 380009..380656 Rickettsia peacockii str. Rustic 7942698 YP_002916346.1 CDS RPR_02270 NC_012730.1 380731 381189 D hypothetical protein 380731..381189 Rickettsia peacockii str. Rustic 7942699 YP_002916347.1 CDS RPR_02275 NC_012730.1 381211 381744 D COG0723 Rieske Fe-S protein; ubiquinol-cytochrome c reductase iron-sulfur subunit 381211..381744 Rickettsia peacockii str. Rustic 7942700 YP_002916348.1 CDS RPR_02280 NC_012730.1 381751 382947 D COG1290 Cytochrome b subunit of the bc complex; cytochrome b 381751..382947 Rickettsia peacockii str. Rustic 7942701 YP_002916349.1 CDS RPR_02285 NC_012730.1 383450 384205 D COG2857 Cytochrome c1; cytochrome c1, heme protein precursor 383450..384205 Rickettsia peacockii str. Rustic 7942702 YP_002916350.1 CDS RPR_02300 NC_012730.1 384994 385497 D COG0071 Molecular chaperone (small heat shock protein); small heat shock protein 384994..385497 Rickettsia peacockii str. Rustic 7942703 YP_002916351.1 CDS prfB NC_012730.1 387398 388255 R recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 complement(387398..388255) Rickettsia peacockii str. Rustic 7942704 YP_002916352.1 CDS RPR_02330 NC_012730.1 388623 390425 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 388623..390425 Rickettsia peacockii str. Rustic 7942705 YP_002916353.1 CDS RPR_02340 NC_012730.1 390727 391821 D COG2801 Transposase and inactivated derivatives; transposase ISRpe1 390727..391821 Rickettsia peacockii str. Rustic 7942707 YP_002916354.1 CDS RPR_02350 NC_012730.1 392166 394739 D COG0542 ATPases with chaperone activity, ATP-binding subunit; clpB protein 392166..394739 Rickettsia peacockii str. Rustic 7942708 YP_002916355.1 CDS RPR_02355 NC_012730.1 394980 395471 R hypothetical protein complement(394980..395471) Rickettsia peacockii str. Rustic 7942709 YP_002916356.1 CDS RPR_02360 NC_012730.1 395598 396632 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease complement(395598..396632) Rickettsia peacockii str. Rustic 7942710 YP_002916357.1 CDS RPR_02365 NC_012730.1 396815 398008 R COG1398 Fatty-acid desaturase; acyl-CoA desaturase complement(396815..398008) Rickettsia peacockii str. Rustic 7942711 YP_002916358.1 CDS rpsF NC_012730.1 398963 399328 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 398963..399328 Rickettsia peacockii str. Rustic 7942712 YP_002916359.1 CDS rpsR NC_012730.1 399353 399640 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 399353..399640 Rickettsia peacockii str. Rustic 7942713 YP_002916360.1 CDS rplI NC_012730.1 399652 400167 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 399652..400167 Rickettsia peacockii str. Rustic 7942714 YP_002916361.1 CDS RPR_02390 NC_012730.1 400470 402071 D COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; tRNA(Ile)-lysidine synthetase 400470..402071 Rickettsia peacockii str. Rustic 7942715 YP_002916362.1 CDS RPR_02395 NC_012730.1 402172 404085 D COG0465 ATP-dependent Zn proteases; cell division protein ftsH 402172..404085 Rickettsia peacockii str. Rustic 7942716 YP_002916363.1 CDS sdhB NC_012730.1 404903 405688 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 404903..405688 Rickettsia peacockii str. Rustic 7942798 YP_002916364.1 CDS RPR_02415 NC_012730.1 406262 407482 R COG1565 Uncharacterized conserved protein; hypothetical protein complement(406262..407482) Rickettsia peacockii str. Rustic 7942800 YP_002916365.1 CDS RPR_02420 NC_012730.1 407461 408240 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(407461..408240) Rickettsia peacockii str. Rustic 7942801 YP_002916366.1 CDS RPR_02430 NC_012730.1 408485 409648 D COG0668 Small-conductance mechanosensitive channel; hypothetical protein 408485..409648 Rickettsia peacockii str. Rustic 7942802 YP_002916367.1 CDS RPR_02435 NC_012730.1 409840 411522 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 409840..411522 Rickettsia peacockii str. Rustic 7942803 YP_002916368.1 CDS RPR_02440 NC_012730.1 411526 412071 D COG0558 Phosphatidylglycerophosphate synthase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 411526..412071 Rickettsia peacockii str. Rustic 7942804 YP_002916369.1 CDS RPR_02445 NC_012730.1 412085 412639 D hypothetical protein 412085..412639 Rickettsia peacockii str. Rustic 7942805 YP_002916370.1 CDS RPR_02450 NC_012730.1 412814 413197 R putative prokaryotic lipoprotein; hypothetical protein complement(412814..413197) Rickettsia peacockii str. Rustic 7942806 YP_002916371.1 CDS RPR_02485 NC_012730.1 415312 415986 R COG0242 N-formylmethionyl-tRNA deformylase; peptide deformylase complement(415312..415986) Rickettsia peacockii str. Rustic 7942807 YP_002916372.1 CDS RPR_02490 NC_012730.1 416185 417690 D COG3202 ATP/ADP translocase; ADP,ATP carrier protein 416185..417690 Rickettsia peacockii str. Rustic 7942808 YP_002916373.1 CDS RPR_02495 NC_012730.1 417910 419211 D COG2271 Sugar phosphate permease; glycerol-3-phosphate transporter 417910..419211 Rickettsia peacockii str. Rustic 7942809 YP_002916374.1 CDS ndk NC_012730.1 419236 419658 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 419236..419658 Rickettsia peacockii str. Rustic 7942810 YP_002916375.1 CDS RPR_02505 NC_012730.1 419662 421530 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 419662..421530 Rickettsia peacockii str. Rustic 7942811 YP_002916376.1 CDS gidB NC_012730.1 421514 422089 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 421514..422089 Rickettsia peacockii str. Rustic 7942812 YP_002916377.1 CDS RPR_02515 NC_012730.1 422086 422853 D COG1192 ATPases involved in chromosome partitioning; chromosome partitioning protein 422086..422853 Rickettsia peacockii str. Rustic 7942813 YP_002916378.1 CDS RPR_02520 NC_012730.1 422840 423700 D COG1475 Predicted transcriptional regulators; stage 0 sporulation protein J 422840..423700 Rickettsia peacockii str. Rustic 7942814 YP_002916379.1 CDS RPR_02525 NC_012730.1 423938 425605 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 423938..425605 Rickettsia peacockii str. Rustic 7942815 YP_002916380.1 CDS RPR_02535 NC_012730.1 425960 426784 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 425960..426784 Rickettsia peacockii str. Rustic 7942816 YP_002916381.1 CDS RPR_02555 NC_012730.1 428607 428939 R COG0316 Uncharacterized conserved protein; HesB protein family protein complement(428607..428939) Rickettsia peacockii str. Rustic 7942817 YP_002916382.1 CDS RPR_02560 NC_012730.1 429169 430323 D dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 429169..430323 Rickettsia peacockii str. Rustic 7942818 YP_002916383.1 CDS argS NC_012730.1 430473 432203 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 430473..432203 Rickettsia peacockii str. Rustic 7942819 YP_002916384.1 CDS RPR_02570 NC_012730.1 432376 433050 D hypothetical protein 432376..433050 Rickettsia peacockii str. Rustic 7942820 YP_002916385.1 CDS RPR_02575 NC_012730.1 433228 435444 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 433228..435444 Rickettsia peacockii str. Rustic 7942821 YP_002916386.1 CDS RPR_02585 NC_012730.1 436144 437460 R COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases; hypothetical protein complement(436144..437460) Rickettsia peacockii str. Rustic 7942822 YP_002916387.1 CDS dcd NC_012730.1 437742 438308 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 437742..438308 Rickettsia peacockii str. Rustic 7942823 YP_002916388.1 CDS RPR_02595 NC_012730.1 438354 438812 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 438354..438812 Rickettsia peacockii str. Rustic 7942824 YP_002916389.1 CDS RPR_02600 NC_012730.1 439037 439750 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; transcriptional activator protein czcR 439037..439750 Rickettsia peacockii str. Rustic 7942825 YP_002916390.1 CDS queF NC_012730.1 439754 440575 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 439754..440575 Rickettsia peacockii str. Rustic 7942826 YP_002916391.1 CDS RPR_02610 NC_012730.1 440893 441453 R COG3820 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein complement(440893..441453) Rickettsia peacockii str. Rustic 7942827 YP_002916392.1 CDS RPR_02615 NC_012730.1 441508 442659 R COG1282 NAD/NADP transhydrogenase beta subunit. N-terminal truncation of 82 AA's due to frameshift. Rusults in change from nine putative transmembrane domains to six.; truncated NAD(P) transhydrogenase subunit beta complement(441508..442659) Rickettsia peacockii str. Rustic 7942828 YP_002916393.1 CDS RPR_02625 NC_012730.1 443043 443777 R COG3047 Outer membrane protein W; hypothetical protein complement(443043..443777) Rickettsia peacockii str. Rustic 7942829 YP_002916394.1 CDS RPR_02630 NC_012730.1 443932 444816 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 443932..444816 Rickettsia peacockii str. Rustic 7942830 YP_002916395.1 CDS RPR_02635 NC_012730.1 444803 446059 D COG0477 Permeases of the major facilitator superfamily; major facilitator transporter 444803..446059 Rickettsia peacockii str. Rustic 7942831 YP_002916396.1 CDS secG NC_012730.1 446895 447197 D preprotein translocase subunit SecG 446895..447197 Rickettsia peacockii str. Rustic 7942833 YP_002916397.1 CDS RPR_02655 NC_012730.1 448103 453301 R 190 kDa antigen precursor complement(448103..453301) Rickettsia peacockii str. Rustic 7942834 YP_002916398.1 CDS cysS NC_012730.1 453598 454977 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 453598..454977 Rickettsia peacockii str. Rustic 7942835 YP_002916399.1 CDS rpsB NC_012730.1 455224 456111 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 455224..456111 Rickettsia peacockii str. Rustic 7942836 YP_002916400.1 CDS tsf NC_012730.1 456308 457237 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 456308..457237 Rickettsia peacockii str. Rustic 7942837 YP_002916401.1 CDS RPR_02690 NC_012730.1 458752 460146 R catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase complement(458752..460146) Rickettsia peacockii str. Rustic 7942838 YP_002916402.1 CDS RPR_02695 NC_012730.1 460143 460799 R COG2121 Uncharacterized protein conserved in bacteria; lipoprotein complement(460143..460799) Rickettsia peacockii str. Rustic 7942839 YP_002916403.1 CDS RPR_02700 NC_012730.1 460950 462155 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(460950..462155) Rickettsia peacockii str. Rustic 7942840 YP_002916404.1 CDS RPR_02705 NC_012730.1 462277 462471 R COG4115 Uncharacterized protein conserved in bacteria; hypothetical protein complement(462277..462471) Rickettsia peacockii str. Rustic 7942841 YP_002916405.1 CDS RPR_02710 NC_012730.1 462464 462715 R COG2161 Antitoxin of toxin-antitoxin stability system; antitoxin of toxin-antitoxin complement(462464..462715) Rickettsia peacockii str. Rustic 7942842 YP_002916406.1 CDS RPR_02715 NC_012730.1 463195 463848 D COG0500 SAM-dependent methyltransferases; SAM-dependent methyltransferase 463195..463848 Rickettsia peacockii str. Rustic 7942843 YP_002916407.1 CDS RPR_02720 NC_012730.1 463826 464608 D COG2853 Surface lipoprotein; vacJ lipoprotein precursor 463826..464608 Rickettsia peacockii str. Rustic 7942844 YP_002916408.1 CDS RPR_02725 NC_012730.1 464628 465227 D COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component; hypothetical protein 464628..465227 Rickettsia peacockii str. Rustic 7942845 YP_002916409.1 CDS alr NC_012730.1 466467 467534 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 466467..467534 Rickettsia peacockii str. Rustic 7942846 YP_002916410.1 CDS RPR_02755 NC_012730.1 467691 468470 D COG0767 ABC-type transport system involved in resistance to organic solvents, permease component; ABC transporter permease 467691..468470 Rickettsia peacockii str. Rustic 7942847 YP_002916411.1 CDS RPR_02760 NC_012730.1 468619 469374 D COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component; ribonucleotide ABC transporter ATP-binding protein 468619..469374 Rickettsia peacockii str. Rustic 7942848 YP_002916412.1 CDS RPR_02765 NC_012730.1 469376 469624 D hypothetical membrane protein 469376..469624 Rickettsia peacockii str. Rustic 7942849 YP_002916413.1 CDS RPR_02770 NC_012730.1 469702 470106 R hypothetical protein complement(469702..470106) Rickettsia peacockii str. Rustic 7942850 YP_002916414.1 CDS RPR_02775 NC_012730.1 470189 470473 R hypothetical protein complement(470189..470473) Rickettsia peacockii str. Rustic 7942851 YP_002916415.1 CDS RPR_02780 NC_012730.1 470781 471278 R COG1871 Chemotaxis protein; stimulates methylation of MCP proteins, CheD superfamily; hypothetical protein complement(470781..471278) Rickettsia peacockii str. Rustic 7942852 YP_002916416.1 CDS rpmB NC_012730.1 472074 472367 D required for 70S ribosome assembly; 50S ribosomal protein L28 472074..472367 Rickettsia peacockii str. Rustic 7942853 YP_002916417.1 CDS RPR_02805 NC_012730.1 472364 472600 D RpmE; RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 472364..472600 Rickettsia peacockii str. Rustic 7942854 YP_002916418.1 CDS engB NC_012730.1 472958 473596 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 472958..473596 Rickettsia peacockii str. Rustic 7942856 YP_002916419.1 CDS RPR_02815 NC_012730.1 473544 474467 D COG0548 Acetylglutamate kinase; acetylglutamate kinase 473544..474467 Rickettsia peacockii str. Rustic 7942857 YP_002916420.1 CDS RPR_02820 NC_012730.1 474480 474767 D COG3702 Type IV secretory pathway, VirB3 components; type IV secretion system protein VirB3 474480..474767 Rickettsia peacockii str. Rustic 7942858 YP_002916421.1 CDS RPR_02825 NC_012730.1 474983 477400 D COG3451 Type IV secretory pathway, VirB4 components; type IV secretion system ATPase VirB4 474983..477400 Rickettsia peacockii str. Rustic 7942859 YP_002916422.1 CDS RPR_02830 NC_012730.1 477518 480484 D COG3704 Type IV secretory pathway, VirB6 components; virB6a protein 477518..480484 Rickettsia peacockii str. Rustic 7942860 YP_002916423.1 CDS RPR_02835 NC_012730.1 480471 482456 D COG3704 Type IV secretory pathway, VirB6 components; virB6b protein 480471..482456 Rickettsia peacockii str. Rustic 7942861 YP_002916424.1 CDS RPR_02840 NC_012730.1 482463 485363 D COG3704 Type IV secretory pathway, VirB6 components; virB6c protein 482463..485363 Rickettsia peacockii str. Rustic 7942862 YP_002916425.1 CDS RPR_02845 NC_012730.1 485537 488212 D COG3704 Type IV secretory pathway, VirB6 components; virB6d protein 485537..488212 Rickettsia peacockii str. Rustic 7942863 YP_002916426.1 CDS RPR_02850 NC_012730.1 488365 491826 D COG3704 Type IV secretory pathway, VirB6 components; virB6e protein 488365..491826 Rickettsia peacockii str. Rustic 7942864 YP_002916427.1 CDS trmD NC_012730.1 495051 495755 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 495051..495755 Rickettsia peacockii str. Rustic 7942865 YP_002916428.1 CDS rplS NC_012730.1 495773 496189 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 495773..496189 Rickettsia peacockii str. Rustic 7942866 YP_002916429.1 CDS RPR_02895 NC_012730.1 496395 497489 D COG2801 Transposase and inactivated derivatives; transposase ISRpe1 496395..497489 Rickettsia peacockii str. Rustic 7942867 YP_002916430.1 CDS RPR_02925 NC_012730.1 500043 500321 D COG1396 Predicted transcriptional regulators; transcriptional regulator 500043..500321 Rickettsia peacockii str. Rustic 7942869 YP_002916431.1 CDS cmk NC_012730.1 500444 501103 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 500444..501103 Rickettsia peacockii str. Rustic 7942870 YP_002916432.1 CDS rpsA NC_012730.1 501358 503064 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 501358..503064 Rickettsia peacockii str. Rustic 7942871 YP_002916433.1 CDS clpP NC_012730.1 503224 503829 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 503224..503829 Rickettsia peacockii str. Rustic 7942872 YP_002916434.1 CDS RPR_02945 NC_012730.1 504401 504568 D hypothetical protein 504401..504568 Rickettsia peacockii str. Rustic 7942874 YP_002916435.1 CDS RPR_02950 NC_012730.1 504847 505875 D catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 504847..505875 Rickettsia peacockii str. Rustic 7942875 YP_002916436.1 CDS RPR_02955 NC_012730.1 505906 507000 R COG2801 Transposase and inactivated derivatives; transposase ISRpe1 complement(505906..507000) Rickettsia peacockii str. Rustic 7942876 YP_002916437.1 CDS RPR_02990 NC_012730.1 509354 511981 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(509354..511981) Rickettsia peacockii str. Rustic 7942877 YP_002916438.1 CDS RPR_02995 NC_012730.1 512145 513056 R COG0552 Signal recognition particle GTPase; cell division protein complement(512145..513056) Rickettsia peacockii str. Rustic 7942878 YP_002916439.1 CDS RPR_03000 NC_012730.1 513260 513733 R COG2913 Small protein A (tmRNA-binding); SmpA/OmlA family lipoprotein complement(513260..513733) Rickettsia peacockii str. Rustic 7942879 YP_002916440.1 CDS rpmF NC_012730.1 513829 514029 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 513829..514029 Rickettsia peacockii str. Rustic 7942880 YP_002916441.1 CDS RPR_03010 NC_012730.1 514037 514993 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 514037..514993 Rickettsia peacockii str. Rustic 7942000 YP_002916442.1 CDS RPR_03020 NC_012730.1 515481 515948 D COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; peptidoglycan-associated lipoprotein precursor 515481..515948 Rickettsia peacockii str. Rustic 7942001 YP_002916443.1 CDS RPR_03025 NC_012730.1 516376 517464 D COG0795 Predicted permeases; hypothetical protein 516376..517464 Rickettsia peacockii str. Rustic 7942003 YP_002916444.1 CDS RPR_03030 NC_012730.1 517675 518715 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 517675..518715 Rickettsia peacockii str. Rustic 7942004 YP_002916445.1 CDS RPR_03035 NC_012730.1 518727 519566 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 518727..519566 Rickettsia peacockii str. Rustic 7942005 YP_002916446.1 CDS RPR_03040 NC_012730.1 519920 520156 D COG1396 Predicted transcriptional regulators; hypothetical protein 519920..520156 Rickettsia peacockii str. Rustic 7942006 YP_002916447.1 CDS gmk NC_012730.1 520297 520986 D COG0194 Guanylate kinase; guanylate kinase 520297..520986 Rickettsia peacockii str. Rustic 7942007 YP_002916448.1 CDS RPR_03050 NC_012730.1 521056 522210 D COG1373 Predicted ATPase (AAA+ superfamily); ATPase 521056..522210 Rickettsia peacockii str. Rustic 7942008 YP_002916449.1 CDS RPR_03060 NC_012730.1 522476 523543 R hypothetical protein complement(522476..523543) Rickettsia peacockii str. Rustic 7942009 YP_002916450.1 CDS RPR_03065 NC_012730.1 523620 525401 R COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein complement(523620..525401) Rickettsia peacockii str. Rustic 7942010 YP_002916451.1 CDS RPR_03070 NC_012730.1 525683 526969 R FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II complement(525683..526969) Rickettsia peacockii str. Rustic 7942011 YP_002916452.1 CDS acpP NC_012730.1 527006 527251 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(527006..527251) Rickettsia peacockii str. Rustic 7942012 YP_002916453.1 CDS fabG NC_012730.1 527430 528155 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(527430..528155) Rickettsia peacockii str. Rustic 7942013 YP_002916454.1 CDS recA NC_012730.1 528148 529179 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(528148..529179) Rickettsia peacockii str. Rustic 7942014 YP_002916455.1 CDS RPR_03120 NC_012730.1 531654 532955 R hypothetical protein complement(531654..532955) Rickettsia peacockii str. Rustic 7942015 YP_002916456.1 CDS trmE NC_012730.1 533348 534685 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(533348..534685) Rickettsia peacockii str. Rustic 7942016 YP_002916457.1 CDS RPR_03130 NC_012730.1 534770 539518 D COG2902 NAD-specific glutamate dehydrogenase; hypothetical protein 534770..539518 Rickettsia peacockii str. Rustic 7942017 YP_002916458.1 CDS RPR_03135 NC_012730.1 539531 539875 D COG1426 Uncharacterized protein conserved in bacteria; hypothetical protein 539531..539875 Rickettsia peacockii str. Rustic 7942018 YP_002916459.1 CDS RPR_03140 NC_012730.1 539882 540229 D COG0419 ATPase involved in DNA repair; hypothetical protein 539882..540229 Rickettsia peacockii str. Rustic 7942019 YP_002916460.1 CDS RPR_03145 NC_012730.1 540232 540549 D COG3027 Uncharacterized protein conserved in bacteria; hypothetical protein 540232..540549 Rickettsia peacockii str. Rustic 7942020 YP_002916461.1 CDS RPR_03150 NC_012730.1 540877 542118 D COG0477 Permeases of the major facilitator superfamily; proline/betaine transporter 540877..542118 Rickettsia peacockii str. Rustic 7942021 YP_002916462.1 CDS RPR_03155 NC_012730.1 542220 542807 D hypothetical protein 542220..542807 Rickettsia peacockii str. Rustic 7942022 YP_002916463.1 CDS RPR_03170 NC_012730.1 544040 544534 R COG1396 Predicted transcriptional regulators; hypothetical protein complement(544040..544534) Rickettsia peacockii str. Rustic 7942023 YP_002916464.1 CDS RPR_03175 NC_012730.1 544818 546023 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase complement(544818..546023) Rickettsia peacockii str. Rustic 7942024 YP_002916465.1 CDS rpmA NC_012730.1 546307 546567 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(546307..546567) Rickettsia peacockii str. Rustic 7942025 YP_002916466.1 CDS rplU NC_012730.1 546592 546909 R COG0261 Ribosomal protein L21; 50S ribosomal protein L21 complement(546592..546909) Rickettsia peacockii str. Rustic 7942026 YP_002916467.1 CDS RPR_03190 NC_012730.1 546998 547597 R COG1267 Phosphatidylglycerophosphatase A and related proteins; phosphatidylglycerophosphatase A complement(546998..547597) Rickettsia peacockii str. Rustic 7942027 YP_002916468.1 CDS tatA NC_012730.1 547678 547845 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 547678..547845 Rickettsia peacockii str. Rustic 7942028 YP_002916469.1 CDS RPR_03200 NC_012730.1 548077 549195 R COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component; hypothetical protein complement(548077..549195) Rickettsia peacockii str. Rustic 7942029 YP_002916470.1 CDS RPR_03205 NC_012730.1 549220 550065 D COG0313 Predicted methyltransferases; tetrapyrrole methylase 549220..550065 Rickettsia peacockii str. Rustic 7942030 YP_002916471.1 CDS RPR_03225 NC_012730.1 551100 551276 R COG5510 Predicted small secreted protein; entericidin B-like protein complement(551100..551276) Rickettsia peacockii str. Rustic 7942031 YP_002916472.1 CDS RPR_03230 NC_012730.1 551514 551954 D hypothetical protein 551514..551954 Rickettsia peacockii str. Rustic 7942032 YP_002916473.1 CDS RPR_03235 NC_012730.1 552106 552297 D hypothetical protein 552106..552297 Rickettsia peacockii str. Rustic 7942033 YP_002916474.1 CDS RPR_03240 NC_012730.1 552342 552824 D hypothetical protein 552342..552824 Rickettsia peacockii str. Rustic 7942034 YP_002916475.1 CDS RPR_03245 NC_012730.1 552898 553530 R COG0177 Predicted EndoIII-related endonuclease; endonuclease III complement(552898..553530) Rickettsia peacockii str. Rustic 7942035 YP_002916476.1 CDS RPR_03250 NC_012730.1 553568 553903 D COG0278 Glutaredoxin-related protein; glutaredoxin 553568..553903 Rickettsia peacockii str. Rustic 7942036 YP_002916477.1 CDS RPR_03255 NC_012730.1 554059 554709 D COG0400 Predicted esterase; carboxylesterase 554059..554709 Rickettsia peacockii str. Rustic 7942037 YP_002916478.1 CDS glyA NC_012730.1 554824 556086 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 554824..556086 Rickettsia peacockii str. Rustic 7942038 YP_002916479.1 CDS RPR_03265 NC_012730.1 556079 556969 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 556079..556969 Rickettsia peacockii str. Rustic 7942039 YP_002916480.1 CDS RPR_03280 NC_012730.1 557651 558154 D COG0319 Predicted metal-dependent hydrolase; putative metalloprotease 557651..558154 Rickettsia peacockii str. Rustic 7942040 YP_002916481.1 CDS RPR_03285 NC_012730.1 558171 559070 D COG1253 Hemolysins and related proteins containing CBS domains; hemolysin 558171..559070 Rickettsia peacockii str. Rustic 7942041 YP_002916482.1 CDS RPR_03305 NC_012730.1 560638 562047 R COG3202 ATP/ADP translocase; ADP,ATP carrier protein complement(560638..562047) Rickettsia peacockii str. Rustic 7942042 YP_002916483.1 CDS RPR_03310 NC_012730.1 562486 563169 D COG3243 Poly(3-hydroxyalkanoate) synthetase; Poly-beta-hydroxybutyrate polymerase 562486..563169 Rickettsia peacockii str. Rustic 7942043 YP_002916484.1 CDS RPR_03370 NC_012730.1 567581 568675 R COG2801 Transposase and inactivated derivatives; transposase ISRpe1 complement(567581..568675) Rickettsia peacockii str. Rustic 7942044 YP_002916485.1 CDS RPR_03380 NC_012730.1 568956 569297 D COG0666 FOG: Ankyrin repeat; ankyrin repeat-containing protein 568956..569297 Rickettsia peacockii str. Rustic 7942045 YP_002916486.1 CDS RPR_03390 NC_012730.1 569817 570911 D COG2801 Transposase and inactivated derivatives; transposase ISRpe1 569817..570911 Rickettsia peacockii str. Rustic 7942046 YP_002916487.1 CDS uvrC NC_012730.1 571215 573134 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(571215..573134) Rickettsia peacockii str. Rustic 7942047 YP_002916488.1 CDS RPR_03400 NC_012730.1 573309 573836 R COG2847 Uncharacterized protein conserved in bacteria; hypothetical protein complement(573309..573836) Rickettsia peacockii str. Rustic 7942048 YP_002916489.1 CDS RPR_03495 NC_012730.1 581497 584217 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(581497..584217) Rickettsia peacockii str. Rustic 7942050 YP_002916490.1 CDS RPR_03500 NC_012730.1 584433 585281 D COG0760 Parvulin-like peptidyl-prolyl isomerase; protein export protein prsA precursor 584433..585281 Rickettsia peacockii str. Rustic 7942051 YP_002916491.1 CDS acpS NC_012730.1 585492 585887 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(585492..585887) Rickettsia peacockii str. Rustic 7942052 YP_002916492.1 CDS rpoZ NC_012730.1 585888 586271 R Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(585888..586271) Rickettsia peacockii str. Rustic 7942053 YP_002916493.1 CDS RPR_03515 NC_012730.1 586450 587709 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(586450..587709) Rickettsia peacockii str. Rustic 7942054 YP_002916494.1 CDS gyrB NC_012730.1 587801 590224 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(587801..590224) Rickettsia peacockii str. Rustic 7942055 YP_002916495.1 CDS RPR_03525 NC_012730.1 590330 591190 D COG0647 Predicted sugar phosphatases of the HAD superfamily; HAD family hydrolase 590330..591190 Rickettsia peacockii str. Rustic 7942056 YP_002916496.1 CDS RPR_03530 NC_012730.1 591696 593066 D COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); Mg2+ transporter 591696..593066 Rickettsia peacockii str. Rustic 7942058 YP_002916497.1 CDS RPR_03550 NC_012730.1 596332 596562 R COG4710 Predicted DNA-binding protein with an HTH domain; putative antitoxin of toxin-antitoxin complement(596332..596562) Rickettsia peacockii str. Rustic 7942060 YP_002916498.1 CDS yajC NC_012730.1 596954 597379 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 596954..597379 Rickettsia peacockii str. Rustic 7942061 YP_002916499.1 CDS secD NC_012730.1 597363 598919 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 597363..598919 Rickettsia peacockii str. Rustic 7942062 YP_002916500.1 CDS RPR_03565 NC_012730.1 599164 599781 D COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems; sco2 protein precursor 599164..599781 Rickettsia peacockii str. Rustic 7942063 YP_002916501.1 CDS RPR_03570 NC_012730.1 599883 600269 D CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 599883..600269 Rickettsia peacockii str. Rustic 7942064 YP_002916502.1 CDS RPR_03575 NC_012730.1 600397 600918 D catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 600397..600918 Rickettsia peacockii str. Rustic 7942065 YP_002916503.1 CDS RPR_03580 NC_012730.1 601129 602796 D COG0728 Uncharacterized membrane protein, putative virulence factor; integral membrane protein MviN 601129..602796 Rickettsia peacockii str. Rustic 7942066 YP_002916504.1 CDS RPR_03585 NC_012730.1 602777 603529 D hypothetical protein 602777..603529 Rickettsia peacockii str. Rustic 7942067 YP_002916505.1 CDS RPR_03605 NC_012730.1 605425 607566 R COG1200 RecG-like helicase; ATP-dependent DNA helicase complement(605425..607566) Rickettsia peacockii str. Rustic 7942068 YP_002916506.1 CDS RPR_03610 NC_012730.1 607752 608846 D COG2801 Transposase and inactivated derivatives; transposase ISRpe1 607752..608846 Rickettsia peacockii str. Rustic 7942069 YP_002916507.1 CDS rnpA NC_012730.1 608872 609228 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(608872..609228) Rickettsia peacockii str. Rustic 7942070 YP_002916508.1 CDS rpmH NC_012730.1 609248 609382 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(609248..609382) Rickettsia peacockii str. Rustic 7942071 YP_002916509.1 CDS rplT NC_012730.1 609465 609818 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(609465..609818) Rickettsia peacockii str. Rustic 7942072 YP_002916510.1 CDS rpmI NC_012730.1 609838 610044 R COG0291 Ribosomal protein L35; 50S ribosomal protein L35 complement(609838..610044) Rickettsia peacockii str. Rustic 7942073 YP_002916511.1 CDS RPR_03635 NC_012730.1 610210 610887 D COG0602 Organic radical activating enzymes; queuosine biosynthesis protein 610210..610887 Rickettsia peacockii str. Rustic 7942074 YP_002916512.1 CDS RPR_03650 NC_012730.1 611642 612253 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 611642..612253 Rickettsia peacockii str. Rustic 7942075 YP_002916513.1 CDS RPR_03655 NC_012730.1 612575 613123 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 612575..613123 Rickettsia peacockii str. Rustic 7942076 YP_002916514.1 CDS RPR_03670 NC_012730.1 613762 614859 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 613762..614859 Rickettsia peacockii str. Rustic 7942077 YP_002916515.1 CDS RPR_03690 NC_012730.1 617437 618666 R COG3621 Patatin [General function prediction only]. As a result of a frameshift mutation, protein is truncated relative to most but not all rickettsial patatins, and contains the entire patatin superfamily domain; truncated putative patatin b1 precursor complement(617437..618666) Rickettsia peacockii str. Rustic 7942078 YP_002916516.1 CDS RPR_03720 NC_012730.1 619952 621349 R COG0591 Na+/proline symporter; major facilitator superfamily permease complement(619952..621349) Rickettsia peacockii str. Rustic 7942160 YP_002916517.1 CDS RPR_03725 NC_012730.1 622002 622520 R COG0666 FOG: Ankyrin repeat; hypothetical protein complement(622002..622520) Rickettsia peacockii str. Rustic 7942079 YP_002916518.1 CDS RPR_03730 NC_012730.1 622944 623393 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 622944..623393 Rickettsia peacockii str. Rustic 7942080 YP_002916519.1 CDS mraW NC_012730.1 623393 624316 D COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; S-adenosyl-methyltransferase MraW 623393..624316 Rickettsia peacockii str. Rustic 7942081 YP_002916520.1 CDS RPR_03740 NC_012730.1 624323 624721 D cell division protein FtsL 624323..624721 Rickettsia peacockii str. Rustic 7942574 YP_002916521.1 CDS RPR_03745 NC_012730.1 625065 626750 D COG0768 Cell division protein FtsI/penicillin-binding protein 2; cell division protein 625065..626750 Rickettsia peacockii str. Rustic 7942575 YP_002916522.1 CDS RPR_03750 NC_012730.1 626925 627119 D hypothetical protein 626925..627119 Rickettsia peacockii str. Rustic 7942576 YP_002916523.1 CDS RPR_03755 NC_012730.1 627369 627890 D hypothetical protein 627369..627890 Rickettsia peacockii str. Rustic 7942577 YP_002916524.1 CDS RPR_03760 NC_012730.1 627880 629661 D COG0768 Cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein 627880..629661 Rickettsia peacockii str. Rustic 7942578 YP_002916525.1 CDS RPR_03775 NC_012730.1 631507 633252 R COG1357 Uncharacterized low-complexity proteins; hypothetical protein complement(631507..633252) Rickettsia peacockii str. Rustic 7942579 YP_002916526.1 CDS RPR_03780 NC_012730.1 633245 634669 R COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; nitrogen assimilation regulatory protein ntrX complement(633245..634669) Rickettsia peacockii str. Rustic 7942580 YP_002916527.1 CDS RPR_03785 NC_012730.1 635176 635475 D subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit F 635176..635475 Rickettsia peacockii str. Rustic 7942581 YP_002916528.1 CDS RPR_03790 NC_012730.1 635456 636742 D Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase 635456..636742 Rickettsia peacockii str. Rustic 7942582 YP_002916529.1 CDS RPR_03885 NC_012730.1 647188 647826 D COG0671 Membrane-associated phospholipid phosphatase; hypothetical protein 647188..647826 Rickettsia peacockii str. Rustic 7942583 YP_002916530.1 CDS RPR_03890 NC_012730.1 648111 648848 D LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily; hypothetical protein 648111..648848 Rickettsia peacockii str. Rustic 7942584 YP_002916531.1 CDS RPR_03920 NC_012730.1 650799 651893 D COG2801 Transposase and inactivated derivatives; transposase ISRpe1 650799..651893 Rickettsia peacockii str. Rustic 7942585 YP_002916532.1 CDS aspS NC_012730.1 652092 653939 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(652092..653939) Rickettsia peacockii str. Rustic 7942586 YP_002916533.1 CDS RPR_03930 NC_012730.1 654000 654434 R hypothetical protein complement(654000..654434) Rickettsia peacockii str. Rustic 7942587 YP_002916534.1 CDS RPR_03935 NC_012730.1 654517 655317 R COG1192 ATPases involved in chromosome partitioning; chromosome partitioning ATPase protein complement(654517..655317) Rickettsia peacockii str. Rustic 7942588 YP_002916535.1 CDS RPR_03940 NC_012730.1 655536 657038 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(655536..657038) Rickettsia peacockii str. Rustic 7942589 YP_002916536.1 CDS RPR_03945 NC_012730.1 657247 658368 D COG0085 DNA-directed RNA polymerase, beta subunit/140 kDa subunit; hypothetical protein 657247..658368 Rickettsia peacockii str. Rustic 7942590 YP_002916537.1 CDS RPR_03950 NC_012730.1 658772 662890 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(658772..662890) Rickettsia peacockii str. Rustic 7942591 YP_002916538.1 CDS rpoB NC_012730.1 663148 667269 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(663148..667269) Rickettsia peacockii str. Rustic 7942592 YP_002916539.1 CDS rplL NC_012730.1 668076 668510 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(668076..668510) Rickettsia peacockii str. Rustic 7942593 YP_002916540.1 CDS rplJ NC_012730.1 668654 669163 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(668654..669163) Rickettsia peacockii str. Rustic 7942594 YP_002916541.1 CDS rplA NC_012730.1 669274 669993 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(669274..669993) Rickettsia peacockii str. Rustic 7942595 YP_002916542.1 CDS rplK NC_012730.1 669999 670436 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(669999..670436) Rickettsia peacockii str. Rustic 7942596 YP_002916543.1 CDS nusG NC_012730.1 670707 671285 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(670707..671285) Rickettsia peacockii str. Rustic 7942597 YP_002916544.1 CDS secE NC_012730.1 671301 671555 R forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(671301..671555) Rickettsia peacockii str. Rustic 7942598 YP_002916545.1 CDS RPR_03990 NC_012730.1 671923 674022 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(671923..674022) Rickettsia peacockii str. Rustic 7942600 YP_002916546.1 CDS RPR_03995 NC_012730.1 674034 674516 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(674034..674516) Rickettsia peacockii str. Rustic 7942601 YP_002916547.1 CDS rpsL NC_012730.1 674543 674932 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(674543..674932) Rickettsia peacockii str. Rustic 7942602 YP_002916548.1 CDS RPR_04005 NC_012730.1 675093 675749 R COG0765 ABC-type amino acid transport system, permease component; amino acid ABC transporter permease complement(675093..675749) Rickettsia peacockii str. Rustic 7942603 YP_002916549.1 CDS sdhA NC_012730.1 675896 677686 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(675896..677686) Rickettsia peacockii str. Rustic 7942604 YP_002916550.1 CDS RPR_04015 NC_012730.1 677820 678197 R COG2142 Succinate dehydrogenase, hydrophobic anchor subunit; succinate dehydrogenase membrane anchor subunit complement(677820..678197) Rickettsia peacockii str. Rustic 7942605 YP_002916551.1 CDS RPR_04025 NC_012730.1 678345 678719 R COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit; succinate dehydrogenase cytochrome b-556 subunit complement(678345..678719) Rickettsia peacockii str. Rustic 7942606 YP_002916552.1 CDS RPR_04030 NC_012730.1 678886 679629 R COG1054 Predicted sulfurtransferase; hypothetical protein complement(678886..679629) Rickettsia peacockii str. Rustic 7942607 YP_002916553.1 CDS RPR_04035 NC_012730.1 679802 681280 R COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; endopeptidase complement(679802..681280) Rickettsia peacockii str. Rustic 7942608 YP_002916554.1 CDS RPR_04040 NC_012730.1 681318 682178 R COG0330 Membrane protease subunits, stomatin/prohibitin homologs; protease activity modulator complement(681318..682178) Rickettsia peacockii str. Rustic 7942609 YP_002916555.1 CDS RPR_04045 NC_012730.1 682271 683311 R COG0330 Membrane protease subunits, stomatin/prohibitin homologs; protease activity modulator HflK complement(682271..683311) Rickettsia peacockii str. Rustic 7942610 YP_002916556.1 CDS RPR_04050 NC_012730.1 683417 684376 D COG0489 ATPases involved in chromosome partitioning; Mrp protein 683417..684376 Rickettsia peacockii str. Rustic 7942611 YP_002916557.1 CDS RPR_04055 NC_012730.1 684373 685419 D COG3660 Predicted nucleoside-diphosphate-sugar epimerase; hypothetical protein 684373..685419 Rickettsia peacockii str. Rustic 7942612 YP_002916558.1 CDS RPR_04060 NC_012730.1 685528 686097 D hypothetical protein 685528..686097 Rickettsia peacockii str. Rustic 7942613 YP_002916559.1 CDS RPR_04065 NC_012730.1 686078 686770 R COG0565 rRNA methylase; rRNA methylase complement(686078..686770) Rickettsia peacockii str. Rustic 7942614 YP_002916560.1 CDS ruvC NC_012730.1 686772 687245 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(686772..687245) Rickettsia peacockii str. Rustic 7942615 YP_002916561.1 CDS era NC_012730.1 687363 688382 R COG1159 GTPase; GTP-binding protein Era complement(687363..688382) Rickettsia peacockii str. Rustic 7942616 YP_002916562.1 CDS rnc NC_012730.1 688375 689058 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(688375..689058) Rickettsia peacockii str. Rustic 7942617 YP_002916563.1 CDS RPR_04085 NC_012730.1 689058 689858 R COG0681 Signal peptidase I; signal peptidase I complement(689058..689858) Rickettsia peacockii str. Rustic 7942618 YP_002916564.1 CDS RPR_04090 NC_012730.1 690042 691307 R part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F complement(690042..691307) Rickettsia peacockii str. Rustic 7942619 YP_002916565.1 CDS secF NC_012730.1 691472 692398 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(691472..692398) Rickettsia peacockii str. Rustic 7942620 YP_002916566.1 CDS RPR_04100 NC_012730.1 692471 692707 D COG3750 Uncharacterized protein conserved in bacteria; hypothetical protein 692471..692707 Rickettsia peacockii str. Rustic 7942621 YP_002916567.1 CDS RPR_04105 NC_012730.1 692763 693857 R COG2801 Transposase and inactivated derivatives; transposase ISRpe1 complement(692763..693857) Rickettsia peacockii str. Rustic 7942622 YP_002916568.1 CDS dnaA NC_012730.1 694602 695993 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein complement(694602..695993) Rickettsia peacockii str. Rustic 7942623 YP_002916569.1 CDS RPR_04115 NC_012730.1 695994 696326 R COG0607 Rhodanese-related sulfurtransferase; hypothetical protein complement(695994..696326) Rickettsia peacockii str. Rustic 7942624 YP_002916570.1 CDS RPR_04120 NC_012730.1 696482 696745 D COG2938 Uncharacterized conserved protein; hypothetical protein 696482..696745 Rickettsia peacockii str. Rustic 7942625 YP_002916571.1 CDS RPR_04125 NC_012730.1 696757 700125 D COG1197 Transcription-repair coupling factor (superfamily II helicase); transcription-repair coupling factor 696757..700125 Rickettsia peacockii str. Rustic 7942626 YP_002916572.1 CDS murE NC_012730.1 700272 701711 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 700272..701711 Rickettsia peacockii str. Rustic 7942627 YP_002916573.1 CDS RPR_04135 NC_012730.1 701920 703269 D COG0770 UDP-N-acetylmuramyl pentapeptide synthase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 701920..703269 Rickettsia peacockii str. Rustic 7942628 YP_002916574.1 CDS mraY NC_012730.1 703454 704539 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 703454..704539 Rickettsia peacockii str. Rustic 7942629 YP_002916575.1 CDS RPR_04150 NC_012730.1 704800 705894 R COG2801 Transposase and inactivated derivatives; transposase ISRpe1 complement(704800..705894) Rickettsia peacockii str. Rustic 7942630 YP_002916576.1 CDS RPR_04155 NC_012730.1 706087 706371 D hypothetical protein 706087..706371 Rickettsia peacockii str. Rustic 7942631 YP_002916577.1 CDS RPR_04180 NC_012730.1 708774 709262 D COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase 708774..709262 Rickettsia peacockii str. Rustic 7942632 YP_002916578.1 CDS RPR_04190 NC_012730.1 710362 711462 R COG0772 Bacterial cell division membrane protein; rod shape-determining protein rodA complement(710362..711462) Rickettsia peacockii str. Rustic 7942633 YP_002916579.1 CDS RPR_04195 NC_012730.1 711584 712678 R COG2801 Transposase and inactivated derivatives; transposase ISRpe1 complement(711584..712678) Rickettsia peacockii str. Rustic 7942634 YP_002916580.1 CDS RPR_04210 NC_012730.1 715044 716582 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D complement(715044..716582) Rickettsia peacockii str. Rustic 7942635 YP_002916581.1 CDS RPR_04215 NC_012730.1 716584 716988 R COG1487 Predicted nucleic acid-binding protein, contains PIN domain; Toxin of toxin-antitoxin system VapC complement(716584..716988) Rickettsia peacockii str. Rustic 7942636 YP_002916582.1 CDS RPR_04220 NC_012730.1 716979 717266 R Antitoxin of toxin-antitoxin (TA) system VapB complement(716979..717266) Rickettsia peacockii str. Rustic 7942637 YP_002916583.1 CDS RPR_04225 NC_012730.1 717453 718916 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D complement(717453..718916) Rickettsia peacockii str. Rustic 7942638 YP_002916584.1 CDS RPR_04230 NC_012730.1 719062 720177 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D complement(719062..720177) Rickettsia peacockii str. Rustic 7942639 YP_002916585.1 CDS RPR_04235 NC_012730.1 720360 720695 R subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C complement(720360..720695) Rickettsia peacockii str. Rustic 7942640 YP_002916586.1 CDS RPR_04240 NC_012730.1 720774 721526 R COG3504 Type IV secretory pathway, VirB9 components; conjugal transfer protein trbG precursor, virB9a complement(720774..721526) Rickettsia peacockii str. Rustic 7942641 YP_002916587.1 CDS RPR_04245 NC_012730.1 721528 722226 R COG3736 Type IV secretory pathway, component VirB8; virB8a protein complement(721528..722226) Rickettsia peacockii str. Rustic 7942642 YP_002916588.1 CDS RPR_04250 NC_012730.1 722691 722870 D virB7 protein 722691..722870 Rickettsia peacockii str. Rustic 7942643 YP_002916589.1 CDS RPR_04255 NC_012730.1 722920 723651 D COG3736 Type IV secretory pathway, component VirB8; virB8b protein 722920..723651 Rickettsia peacockii str. Rustic 7942644 YP_002916590.1 CDS RPR_04260 NC_012730.1 723638 724111 D COG3504 Type IV secretory pathway, VirB9 components; virB9b protein 723638..724111 Rickettsia peacockii str. Rustic 7942645 YP_002916591.1 CDS RPR_04265 NC_012730.1 724295 725743 D COG2948 Type IV secretory pathway, VirB10 components; virB10 protein 724295..725743 Rickettsia peacockii str. Rustic 7942646 YP_002916592.1 CDS RPR_04270 NC_012730.1 725740 726744 D COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis; type IV secretion system ATPase VirB11 725740..726744 Rickettsia peacockii str. Rustic 7942647 YP_002916593.1 CDS RPR_04275 NC_012730.1 726899 728674 D COG3505 Type IV secretory pathway, VirD4 components; type IV secretion system component VirD4 726899..728674 Rickettsia peacockii str. Rustic 7942648 YP_002916594.1 CDS RPR_04280 NC_012730.1 728667 730088 D COG0248 Exopolyphosphatase; exopolyphosphatase 728667..730088 Rickettsia peacockii str. Rustic 7942649 YP_002916595.1 CDS RPR_04315 NC_012730.1 732492 732776 R phage host specificity protein complement(732492..732776) Rickettsia peacockii str. Rustic 7942650 YP_002916596.1 CDS RPR_04320 NC_012730.1 733018 733902 D hypothetical protein 733018..733902 Rickettsia peacockii str. Rustic 7942651 YP_002916597.1 CDS RPR_04325 NC_012730.1 733886 734710 D hypothetical protein 733886..734710 Rickettsia peacockii str. Rustic 7942652 YP_002916598.1 CDS RPR_04330 NC_012730.1 734713 735489 D COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase; 3'(2'),5'-bisphosphate nucleotidase 734713..735489 Rickettsia peacockii str. Rustic 7942653 YP_002916599.1 CDS RPR_04335 NC_012730.1 735629 738301 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(735629..738301) Rickettsia peacockii str. Rustic 7942654 YP_002916600.1 CDS RPR_04340 NC_012730.1 738472 738906 R catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B complement(738472..738906) Rickettsia peacockii str. Rustic 7942655 YP_002916601.1 CDS RPR_04345 NC_012730.1 738994 739632 D COG0739 Membrane proteins related to metalloendopeptidases; peptidoglycan-specific endopeptidase, M23 family protein 738994..739632 Rickettsia peacockii str. Rustic 7942799 YP_002916602.1 CDS RPR_04350 NC_012730.1 739633 740325 D COG1451 Predicted metal-dependent hydrolase; zinc metalloprotease 739633..740325 Rickettsia peacockii str. Rustic 7942247 YP_002916603.1 CDS thyX NC_012730.1 740434 741318 D flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 740434..741318 Rickettsia peacockii str. Rustic 7942717 YP_002916604.1 CDS tolB NC_012730.1 741393 742727 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 741393..742727 Rickettsia peacockii str. Rustic 7942718 YP_002916605.1 CDS RPR_04365 NC_012730.1 742865 743746 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(742865..743746) Rickettsia peacockii str. Rustic 7942719 YP_002916606.1 CDS RPR_04370 NC_012730.1 743835 744401 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 743835..744401 Rickettsia peacockii str. Rustic 7942720 YP_002916607.1 CDS RPR_04375 NC_012730.1 744499 745479 R COG0457 FOG: TPR repeat; hypothetical protein complement(744499..745479) Rickettsia peacockii str. Rustic 7942721 YP_002916608.1 CDS RPR_04376 NC_012730.1 745659 746639 R COG0457 FOG: TPR repeat; hypothetical protein complement(745659..746639) Rickettsia peacockii str. Rustic 7942157 YP_002916609.1 CDS mnmA NC_012730.1 746901 747998 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 746901..747998 Rickettsia peacockii str. Rustic 7942722 YP_002916610.1 CDS RPR_04385 NC_012730.1 748129 749526 D COG0531 Amino acid transporters; cationic amino acid transporter-1 748129..749526 Rickettsia peacockii str. Rustic 7942723 YP_002916611.1 CDS hisS NC_012730.1 749676 750920 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 749676..750920 Rickettsia peacockii str. Rustic 7942724 YP_002916612.1 CDS RPR_04435 NC_012730.1 755783 756508 D COG0811 Biopolymer transport proteins; tolQ protein 755783..756508 Rickettsia peacockii str. Rustic 7942725 YP_002916613.1 CDS RPR_04440 NC_012730.1 756508 756939 D COG0848 Biopolymer transport protein; tolR protein 756508..756939 Rickettsia peacockii str. Rustic 7942726 YP_002916614.1 CDS RPR_04445 NC_012730.1 756929 757900 D COG0810 Periplasmic protein TonB, links inner and outer membranes; tonB/tolA protein 756929..757900 Rickettsia peacockii str. Rustic 7942727 YP_002916615.1 CDS RPR_04450 NC_012730.1 758888 759595 D COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; hypothetical protein 758888..759595 Rickettsia peacockii str. Rustic 7942161 YP_002916616.1 CDS RPR_04455 NC_012730.1 759546 760862 R COG0477 Permeases of the major facilitator superfamily; proline/betaine transporter complement(759546..760862) Rickettsia peacockii str. Rustic 7942728 YP_002916617.1 CDS RPR_04460 NC_012730.1 761001 762536 R COG0845 Membrane-fusion protein; type I secretion adaptor protein complement(761001..762536) Rickettsia peacockii str. Rustic 7942729 YP_002916618.1 CDS RPR_04465 NC_012730.1 762721 764475 R COG4618 ABC-type protease/lipase transport system, ATPase and permease components; type I protein secretion ATP-binding protein complement(762721..764475) Rickettsia peacockii str. Rustic 7942730 YP_002916619.1 CDS RPR_04470 NC_012730.1 764486 765502 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(764486..765502) Rickettsia peacockii str. Rustic 7942731 YP_002916620.1 CDS RPR_04475 NC_012730.1 765495 765854 R COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; hypothetical protein complement(765495..765854) Rickettsia peacockii str. Rustic 7942732 YP_002916621.1 CDS RPR_04480 NC_012730.1 766044 766394 R hypothetical protein complement(766044..766394) Rickettsia peacockii str. Rustic 7942733 YP_002916622.1 CDS RPR_04485 NC_012730.1 766668 767216 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 766668..767216 Rickettsia peacockii str. Rustic 7942734 YP_002916623.1 CDS hslU NC_012730.1 767213 768565 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 767213..768565 Rickettsia peacockii str. Rustic 7942735 YP_002916624.1 CDS RPR_04520 NC_012730.1 770711 771289 D hypothetical protein 770711..771289 Rickettsia peacockii str. Rustic 7942736 YP_002916625.1 CDS lpxB NC_012730.1 771299 772639 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 771299..772639 Rickettsia peacockii str. Rustic 7942737 YP_002916626.1 CDS RPR_04530 NC_012730.1 772636 772908 R hypothetical protein complement(772636..772908) Rickettsia peacockii str. Rustic 7942738 YP_002916627.1 CDS RPR_04535 NC_012730.1 773256 774275 D COG1559 Predicted periplasmic solute-binding protein; hypothetical protein 773256..774275 Rickettsia peacockii str. Rustic 7942739 YP_002916628.1 CDS cyaY NC_012730.1 774415 774726 D defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 774415..774726 Rickettsia peacockii str. Rustic 7942740 YP_002916629.1 CDS RPR_04555 NC_012730.1 775843 776319 D hypothetical protein 775843..776319 Rickettsia peacockii str. Rustic 7942741 YP_002916630.1 CDS RPR_04575 NC_012730.1 778916 779908 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(778916..779908) Rickettsia peacockii str. Rustic 7942743 YP_002916631.1 CDS RPR_04580 NC_012730.1 780136 780711 D COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 780136..780711 Rickettsia peacockii str. Rustic 7942744 YP_002916632.1 CDS RPR_04585 NC_012730.1 780776 781216 D COG5622 Protein required for attachment to host cells; hypothetical protein 780776..781216 Rickettsia peacockii str. Rustic 7942745 YP_002916633.1 CDS RPR_04590 NC_012730.1 781453 782172 D COG2945 Predicted hydrolase of the alpha/beta superfamily; hypothetical protein 781453..782172 Rickettsia peacockii str. Rustic 7942746 YP_002916634.1 CDS RPR_04595 NC_012730.1 782364 783368 R COG2956 Predicted N-acetylglucosaminyl transferase; hypothetical protein complement(782364..783368) Rickettsia peacockii str. Rustic 7942747 YP_002916635.1 CDS RPR_04600 NC_012730.1 783361 784116 R hypothetical protein complement(783361..784116) Rickettsia peacockii str. Rustic 7942748 YP_002916636.1 CDS RPR_04605 NC_012730.1 784100 784774 R COG1587 Uroporphyrinogen-III synthase; uroporphyrinogen-III synthase complement(784100..784774) Rickettsia peacockii str. Rustic 7942749 YP_002916637.1 CDS RPR_04610 NC_012730.1 784752 785393 R COG1279 Lysine efflux permease; lysine efflux permease complement(784752..785393) Rickettsia peacockii str. Rustic 7942750 YP_002916638.1 CDS RPR_04620 NC_012730.1 785988 787373 R COG0477 Permeases of the major facilitator superfamily; AmpG complement(785988..787373) Rickettsia peacockii str. Rustic 7942751 YP_002916639.1 CDS RPR_04640 NC_012730.1 788435 789940 D COG3202 ATP/ADP translocase; ADP,ATP carrier protein 788435..789940 Rickettsia peacockii str. Rustic 7942752 YP_002916640.1 CDS RPR_04645 NC_012730.1 790136 791794 D hypothetical protein 790136..791794 Rickettsia peacockii str. Rustic 7942753 YP_002916641.1 CDS RPR_04650 NC_012730.1 791781 792896 D COG0142 Geranylgeranyl pyrophosphate synthase; octaprenyl-diphosphate synthase 791781..792896 Rickettsia peacockii str. Rustic 7942754 YP_002916642.1 CDS RPR_04655 NC_012730.1 793211 795058 R COG0006 Xaa-Pro aminopeptidase; putative aminopeptidase complement(793211..795058) Rickettsia peacockii str. Rustic 7942757 YP_002916643.1 CDS RPR_04660 NC_012730.1 795200 796483 R COG0531 Amino acid transporters; amino acid permease complement(795200..796483) Rickettsia peacockii str. Rustic 7942758 YP_002916644.1 CDS RPR_04670 NC_012730.1 797336 797668 R COG0316 Uncharacterized conserved protein; HesB protein family protein complement(797336..797668) Rickettsia peacockii str. Rustic 7942759 YP_002916645.1 CDS RPR_04675 NC_012730.1 797672 798067 R COG0822 NifU homolog involved in Fe-S cluster formation; scaffold protein complement(797672..798067) Rickettsia peacockii str. Rustic 7942760 YP_002916646.1 CDS RPR_04680 NC_012730.1 798219 799451 R catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase complement(798219..799451) Rickettsia peacockii str. Rustic 7942761 YP_002916647.1 CDS RPR_04685 NC_012730.1 799554 800672 R COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; NifS protein complement(799554..800672) Rickettsia peacockii str. Rustic 7942762 YP_002916648.1 CDS RPR_04690 NC_012730.1 800669 801088 R COG1959 Predicted transcriptional regulator; Rrf2 family protein complement(800669..801088) Rickettsia peacockii str. Rustic 7942763 YP_002916649.1 CDS RPR_04710 NC_012730.1 803076 803948 R hypothetical protein complement(803076..803948) Rickettsia peacockii str. Rustic 7942764 YP_002916650.1 CDS RPR_04715 NC_012730.1 804399 804848 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; putative histone and other protein acetyltransferase 804399..804848 Rickettsia peacockii str. Rustic 7942765 YP_002916651.1 CDS RPR_04730 NC_012730.1 805464 806558 D COG2801 Transposase and inactivated derivatives; transposase ISRpe1 805464..806558 Rickettsia peacockii str. Rustic 7942766 YP_002916652.1 CDS dnaE NC_012730.1 814640 818185 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(814640..818185) Rickettsia peacockii str. Rustic 7942767 YP_002916653.1 CDS RPR_04805 NC_012730.1 818343 819641 R COG1004 Predicted UDP-glucose 6-dehydrogenase; UDP-glucose 6-dehydrogenase complement(818343..819641) Rickettsia peacockii str. Rustic 7942768 YP_002916654.1 CDS RPR_04810 NC_012730.1 819889 822399 D hypothetical protein 819889..822399 Rickettsia peacockii str. Rustic 7942769 YP_002916655.1 CDS RPR_04815 NC_012730.1 822537 824078 D COG0477 Permeases of the major facilitator superfamily; AmpG 822537..824078 Rickettsia peacockii str. Rustic 7942770 YP_002916656.1 CDS RPR_04820 NC_012730.1 824145 824900 D COG0805 Sec-independent protein secretion pathway component TatC; Sec-independent protein translocase protein 824145..824900 Rickettsia peacockii str. Rustic 7942771 YP_002916657.1 CDS RPR_04825 NC_012730.1 824878 826155 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 824878..826155 Rickettsia peacockii str. Rustic 7942772 YP_002916658.1 CDS RPR_04830 NC_012730.1 826493 828925 D COG3451 Type IV secretory pathway, VirB4 components; virB4b ATPase 826493..828925 Rickettsia peacockii str. Rustic 7942773 YP_002916659.1 CDS RPR_04835 NC_012730.1 829061 832549 D hypothetical protein 829061..832549 Rickettsia peacockii str. Rustic 7942774 YP_002916660.1 CDS RPR_04840 NC_012730.1 832554 833459 D COG0861 Membrane protein TerC, possibly involved in tellurium resistance; tellurium resistance protein TerC 832554..833459 Rickettsia peacockii str. Rustic 7942775 YP_002916661.1 CDS RPR_04845 NC_012730.1 833503 834246 D COG3637 Opacity protein and related surface antigens; hypothetical protein 833503..834246 Rickettsia peacockii str. Rustic 7942776 YP_002916662.1 CDS RPR_04850 NC_012730.1 834301 835965 D COG0500 SAM-dependent methyltransferases; hypothetical protein 834301..835965 Rickettsia peacockii str. Rustic 7942777 YP_002916663.1 CDS RPR_04855 NC_012730.1 836008 836229 D hypothetical protein 836008..836229 Rickettsia peacockii str. Rustic 7942778 YP_002916664.1 CDS RPR_04860 NC_012730.1 836302 836730 D COG2944 Predicted transcriptional regulator; hypothetical protein 836302..836730 Rickettsia peacockii str. Rustic 7942779 YP_002916665.1 CDS RPR_04865 NC_012730.1 836763 837380 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 836763..837380 Rickettsia peacockii str. Rustic 7942780 YP_002916666.1 CDS RPR_04870 NC_012730.1 837373 837687 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 837373..837687 Rickettsia peacockii str. Rustic 7942781 YP_002916667.1 CDS RPR_04875 NC_012730.1 837720 839660 D Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 837720..839660 Rickettsia peacockii str. Rustic 7942782 YP_002916668.1 CDS RPR_04880 NC_012730.1 839814 841295 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 839814..841295 Rickettsia peacockii str. Rustic 7942783 YP_002916669.1 CDS RPR_04885 NC_012730.1 841581 842285 D ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 841581..842285 Rickettsia peacockii str. Rustic 7942784 YP_002916670.1 CDS RPR_04890 NC_012730.1 842770 843249 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(842770..843249) Rickettsia peacockii str. Rustic 7942785 YP_002916671.1 CDS RPR_04895 NC_012730.1 843436 844455 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(843436..844455) Rickettsia peacockii str. Rustic 7942786 YP_002916672.1 CDS RPR_04900 NC_012730.1 844577 846607 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G complement(844577..846607) Rickettsia peacockii str. Rustic 7942787 YP_002916673.1 CDS RPR_04905 NC_012730.1 846595 846951 R COG3671 Predicted membrane protein; hypothetical protein complement(846595..846951) Rickettsia peacockii str. Rustic 7942788 YP_002916674.1 CDS RPR_04910 NC_012730.1 847120 849756 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(847120..849756) Rickettsia peacockii str. Rustic 7942789 YP_002916675.1 CDS atpC NC_012730.1 849938 850276 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(849938..850276) Rickettsia peacockii str. Rustic 7942790 YP_002916676.1 CDS RPR_04920 NC_012730.1 850334 851755 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(850334..851755) Rickettsia peacockii str. Rustic 7942791 YP_002916677.1 CDS RPR_04925 NC_012730.1 851928 852899 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(851928..852899) Rickettsia peacockii str. Rustic 7942792 YP_002916678.1 CDS RPR_04930 NC_012730.1 853032 854564 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(853032..854564) Rickettsia peacockii str. Rustic 7942793 YP_002916679.1 CDS RPR_04935 NC_012730.1 854730 855284 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(854730..855284) Rickettsia peacockii str. Rustic 7942794 YP_002916680.1 CDS RPR_04940 NC_012730.1 855446 856825 R Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(855446..856825) Rickettsia peacockii str. Rustic 7942795 YP_002916681.1 CDS RPR_04945 NC_012730.1 856980 857408 R COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); ferroxidase complement(856980..857408) Rickettsia peacockii str. Rustic 7942796 YP_002916682.1 CDS tig NC_012730.1 859829 861166 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(859829..861166) Rickettsia peacockii str. Rustic 7942797 YP_002916683.1 CDS RPR_04980 NC_012730.1 862457 863701 R catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase complement(862457..863701) Rickettsia peacockii str. Rustic 7942165 YP_002916684.1 CDS RPR_04985 NC_012730.1 863880 865745 R molecular chaperone; heat shock protein 90 complement(863880..865745) Rickettsia peacockii str. Rustic 7942166 YP_002916685.1 CDS RPR_04990 NC_012730.1 865889 866206 R COG1872 Uncharacterized conserved protein; hypothetical protein complement(865889..866206) Rickettsia peacockii str. Rustic 7942167 YP_002916686.1 CDS RPR_05010 NC_012730.1 867882 868709 R hypothetical protein complement(867882..868709) Rickettsia peacockii str. Rustic 7942169 YP_002916687.1 CDS RPR_05015 NC_012730.1 868721 869179 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(868721..869179) Rickettsia peacockii str. Rustic 7942170 YP_002916688.1 CDS uvrA NC_012730.1 869288 872149 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 869288..872149 Rickettsia peacockii str. Rustic 7942171 YP_002916689.1 CDS RPR_05055 NC_012730.1 874366 875067 R COG1121 ABC-type Mn/Zn transport systems, ATPase component; zinc ABC transporter ATP-binding protein complement(874366..875067) Rickettsia peacockii str. Rustic 7942172 YP_002916690.1 CDS RPR_05060 NC_012730.1 875207 875671 R COG1881 Phospholipid-binding protein; phosphatidylethanolamine-binding protein PEBP complement(875207..875671) Rickettsia peacockii str. Rustic 7942173 YP_002916691.1 CDS RPR_05065 NC_012730.1 875802 876281 R COG4520 Surface antigen; 17 kDa common-antigen complement(875802..876281) Rickettsia peacockii str. Rustic 7942174 YP_002916692.1 CDS RPR_05070 NC_012730.1 876483 877388 D COG0053 Predicted Co/Zn/Cd cation transporters; CzcD 876483..877388 Rickettsia peacockii str. Rustic 7942175 YP_002916693.1 CDS RPR_05075 NC_012730.1 877369 877875 D COG0590 Cytosine/adenosine deaminases; tRNA-specific adenosine deaminase 877369..877875 Rickettsia peacockii str. Rustic 7942176 YP_002916694.1 CDS RPR_05080 NC_012730.1 877890 878582 D COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component; heme chaperone heme-lyase 877890..878582 Rickettsia peacockii str. Rustic 7942177 YP_002916695.1 CDS RPR_05085 NC_012730.1 878587 878913 D COG1146 Ferredoxin; ferredoxin 878587..878913 Rickettsia peacockii str. Rustic 7942178 YP_002916696.1 CDS RPR_05090 NC_012730.1 879237 879911 D COG3637 Opacity protein and related surface antigens; hypothetical protein 879237..879911 Rickettsia peacockii str. Rustic 7942179 YP_002916697.1 CDS RPR_05095 NC_012730.1 880158 880895 D COG3637 Opacity protein and related surface antigens; hypothetical protein 880158..880895 Rickettsia peacockii str. Rustic 7942180 YP_002916698.1 CDS RPR_05100 NC_012730.1 881389 881712 R hypothetical protein complement(881389..881712) Rickettsia peacockii str. Rustic 7942181 YP_002916699.1 CDS RPR_05105 NC_012730.1 881709 882692 R COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; UDP-phosphate alpha-N-acetylglucosaminyltransferase complement(881709..882692) Rickettsia peacockii str. Rustic 7942182 YP_002916700.1 CDS RPR_05125 NC_012730.1 883609 884388 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(883609..884388) Rickettsia peacockii str. Rustic 7942183 YP_002916701.1 CDS RPR_05135 NC_012730.1 885595 887829 D COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; cell division protein 885595..887829 Rickettsia peacockii str. Rustic 7942184 YP_002916702.1 CDS RPR_05175 NC_012730.1 893135 894709 D COG0760 Parvulin-like peptidyl-prolyl isomerase; peptidyl-prolyl cis-trans isomerase 893135..894709 Rickettsia peacockii str. Rustic 7942185 YP_002916703.1 CDS RPR_05180 NC_012730.1 894862 896340 D COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; 3-polyprenyl-4-hydroxybenzoate decarboxylase 894862..896340 Rickettsia peacockii str. Rustic 7942186 YP_002916704.1 CDS RPR_05195 NC_012730.1 897063 897665 D COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; phospholipase D superfamily protein PLD 897063..897665 Rickettsia peacockii str. Rustic 7942187 YP_002916705.1 CDS xerC NC_012730.1 898176 899093 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 898176..899093 Rickettsia peacockii str. Rustic 7942188 YP_002916706.1 CDS RPR_05210 NC_012730.1 899196 899627 D COG1734 DnaK suppressor protein; dnaK suppressor protein 899196..899627 Rickettsia peacockii str. Rustic 7942189 YP_002916707.1 CDS RPR_05215 NC_012730.1 899761 900408 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(899761..900408) Rickettsia peacockii str. Rustic 7942190 YP_002916708.1 CDS infA NC_012730.1 900420 900635 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(900420..900635) Rickettsia peacockii str. Rustic 7942191 YP_002916709.1 CDS RPR_05290 NC_012730.1 908297 908536 R COG0271 Stress-induced morphogen (activity unknown); BolA complement(908297..908536) Rickettsia peacockii str. Rustic 7942193 YP_002916710.1 CDS RPR_05295 NC_012730.1 908692 909018 D COG0799 Uncharacterized homolog of plant Iojap protein; iojap superfamily protein 908692..909018 Rickettsia peacockii str. Rustic 7942194 YP_002916711.1 CDS RPR_05300 NC_012730.1 909015 910742 D COG0475 Kef-type K+ transport systems, membrane components; glutathione-regulated potassium-efflux system protein 909015..910742 Rickettsia peacockii str. Rustic 7942195 YP_002916712.1 CDS RPR_05305 NC_012730.1 910735 911214 D COG3807 Uncharacterized protein conserved in bacteria; hypothetical protein 910735..911214 Rickettsia peacockii str. Rustic 7942196 YP_002916713.1 CDS RPR_05310 NC_012730.1 911338 912432 R COG2801 Transposase and inactivated derivatives; transposase ISRpe1 complement(911338..912432) Rickettsia peacockii str. Rustic 7942197 YP_002916714.1 CDS hemC NC_012730.1 912723 913778 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(912723..913778) Rickettsia peacockii str. Rustic 7942198 YP_002916715.1 CDS RPR_05320 NC_012730.1 913775 914764 R COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF; microcin C7 self-immunity protein complement(913775..914764) Rickettsia peacockii str. Rustic 7942199 YP_002916716.1 CDS RPR_05355 NC_012730.1 918583 918921 R hypothetical protein complement(918583..918921) Rickettsia peacockii str. Rustic 7942200 YP_002916717.1 CDS RPR_05365 NC_012730.1 919250 920257 R COG0354 Predicted aminomethyltransferase related to GcvT; hypothetical protein complement(919250..920257) Rickettsia peacockii str. Rustic 7942201 YP_002916718.1 CDS RPR_05370 NC_012730.1 920370 921161 D COG1723 Uncharacterized conserved protein; hypothetical protein 920370..921161 Rickettsia peacockii str. Rustic 7942202 YP_002916719.1 CDS RPR_05375 NC_012730.1 921171 922016 D COG0349 Ribonuclease D; ribonuclease D 921171..922016 Rickettsia peacockii str. Rustic 7942203 YP_002916720.1 CDS RPR_05380 NC_012730.1 922086 922295 R hypothetical protein complement(922086..922295) Rickettsia peacockii str. Rustic 7942204 YP_002916721.1 CDS RPR_05385 NC_012730.1 922392 922913 R COG0212 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase complement(922392..922913) Rickettsia peacockii str. Rustic 7942205 YP_002916722.1 CDS RPR_05390 NC_012730.1 923205 924584 R Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(923205..924584) Rickettsia peacockii str. Rustic 7942206 YP_002916723.1 CDS RPR_05395 NC_012730.1 924737 925417 R COG0500 SAM-dependent methyltransferases; biotin synthesis protein BioC complement(924737..925417) Rickettsia peacockii str. Rustic 7942207 YP_002916724.1 CDS RPR_05400 NC_012730.1 925488 925943 R hypothetical protein complement(925488..925943) Rickettsia peacockii str. Rustic 7942208 YP_002916725.1 CDS RPR_05480 NC_012730.1 932501 933838 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 932501..933838 Rickettsia peacockii str. Rustic 7942209 YP_002916726.1 CDS RPR_05485 NC_012730.1 933842 936214 D COG5009 Membrane carboxypeptidase/penicillin-binding protein; multimodular transpeptidase-transglycosylase PBP 1A 933842..936214 Rickettsia peacockii str. Rustic 7942210 YP_002916727.1 CDS RPR_05495 NC_012730.1 936610 937704 D COG2801 Transposase and inactivated derivatives; transposase ISRpe1 936610..937704 Rickettsia peacockii str. Rustic 7942211 YP_002916728.1 CDS RPR_05500 NC_012730.1 938095 938841 R COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); UDP-N-acetylglucosamine pyrophosphorylase complement(938095..938841) Rickettsia peacockii str. Rustic 7942213 YP_002916729.1 CDS RPR_05505 NC_012730.1 938838 939599 R COG0217 Uncharacterized conserved protein; hypothetical protein complement(938838..939599) Rickettsia peacockii str. Rustic 7942214 YP_002916730.1 CDS rpmJ NC_012730.1 939808 939933 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 complement(939808..939933) Rickettsia peacockii str. Rustic 7942215 YP_002916731.1 CDS RPR_05515 NC_012730.1 940243 940425 D hypothetical protein 940243..940425 Rickettsia peacockii str. Rustic 7942162 YP_002916732.1 CDS RPR_05520 NC_012730.1 940887 941339 D hypothetical protein 940887..941339 Rickettsia peacockii str. Rustic 7942216 YP_002916733.1 CDS RPR_05525 NC_012730.1 941441 942283 D COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); virB1 protein 941441..942283 Rickettsia peacockii str. Rustic 7942217 YP_002916734.1 CDS RPR_05530 NC_012730.1 942288 942773 D hypothetical protein 942288..942773 Rickettsia peacockii str. Rustic 7942218 YP_002916735.1 CDS RPR_05535 NC_012730.1 942850 943944 R COG2801 Transposase and inactivated derivatives; transposase ISRpe1 complement(942850..943944) Rickettsia peacockii str. Rustic 7942219 YP_002916736.1 CDS smpB NC_012730.1 944131 944589 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(944131..944589) Rickettsia peacockii str. Rustic 7942220 YP_002916737.1 CDS RPR_05545 NC_012730.1 944586 945470 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(944586..945470) Rickettsia peacockii str. Rustic 7942221 YP_002916738.1 CDS RPR_05550 NC_012730.1 945656 946528 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(945656..946528) Rickettsia peacockii str. Rustic 7942222 YP_002916739.1 CDS RPR_05555 NC_012730.1 946744 947424 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; response regulator protein OmpR 946744..947424 Rickettsia peacockii str. Rustic 7942223 YP_002916740.1 CDS RPR_05560 NC_012730.1 947399 948838 D COG0642 Signal transduction histidine kinase; osmolarity sensor protein envZ 947399..948838 Rickettsia peacockii str. Rustic 7942224 YP_002916741.1 CDS RPR_05565 NC_012730.1 948984 949691 D COG0020 Undecaprenyl pyrophosphate synthase; UDP pyrophosphate synthetase 948984..949691 Rickettsia peacockii str. Rustic 7942225 YP_002916742.1 CDS RPR_05570 NC_012730.1 949651 950340 D COG0575 CDP-diglyceride synthetase; phosphatidate cytidylyltransferase 949651..950340 Rickettsia peacockii str. Rustic 7942226 YP_002916743.1 CDS RPR_05575 NC_012730.1 950340 950645 D COG2919 Septum formation initiator; septum formation initiator 950340..950645 Rickettsia peacockii str. Rustic 7942227 YP_002916744.1 CDS RPR_05580 NC_012730.1 950796 951407 D COG0349 Ribonuclease D; ribonuclease D 950796..951407 Rickettsia peacockii str. Rustic 7942228 YP_002916745.1 CDS RPR_05585 NC_012730.1 951812 951970 D hypothetical protein 951812..951970 Rickettsia peacockii str. Rustic 7942229 YP_002916746.1 CDS leuS NC_012730.1 952488 954995 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(952488..954995) Rickettsia peacockii str. Rustic 7942230 YP_002916747.1 CDS RPR_05600 NC_012730.1 955124 955627 R hypothetical protein complement(955124..955627) Rickettsia peacockii str. Rustic 7942231 YP_002916748.1 CDS RPR_05615 NC_012730.1 955987 957126 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(955987..957126) Rickettsia peacockii str. Rustic 7942232 YP_002916749.1 CDS pheT NC_012730.1 957131 959587 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(957131..959587) Rickettsia peacockii str. Rustic 7942233 YP_002916750.1 CDS pheS NC_012730.1 959584 960633 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(959584..960633) Rickettsia peacockii str. Rustic 7942234 YP_002916751.1 CDS RPR_05635 NC_012730.1 960876 962141 R COG0621 2-methylthioadenine synthetase; tRNA 2-methylthioadenosine synthase-like protein complement(960876..962141) Rickettsia peacockii str. Rustic 7942235 YP_002916752.1 CDS dapF NC_012730.1 962116 962928 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(962116..962928) Rickettsia peacockii str. Rustic 7942236 YP_002916753.1 CDS RPR_05660 NC_012730.1 963909 964928 D COG0438 Glycosyltransferase; capM protein 963909..964928 Rickettsia peacockii str. Rustic 7942237 YP_002916754.1 CDS RPR_05710 NC_012730.1 968646 969296 R hypothetical protein complement(968646..969296) Rickettsia peacockii str. Rustic 7942238 YP_002916755.1 CDS murG NC_012730.1 969693 970823 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDP diphospho-muramoyl pentapeptide beta-N acetylglucosaminyl transferase complement(969693..970823) Rickettsia peacockii str. Rustic 7942239 YP_002916756.1 CDS RPR_05720 NC_012730.1 970820 971953 R COG0772 Bacterial cell division membrane protein; cell division protein FtsW complement(970820..971953) Rickettsia peacockii str. Rustic 7942240 YP_002916757.1 CDS murD NC_012730.1 972085 973587 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(972085..973587) Rickettsia peacockii str. Rustic 7942241 YP_002916758.1 CDS RPR_05730 NC_012730.1 973759 974007 R hypothetical protein complement(973759..974007) Rickettsia peacockii str. Rustic 7942242 YP_002916759.1 CDS lspA NC_012730.1 974161 974781 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(974161..974781) Rickettsia peacockii str. Rustic 7942243 YP_002916760.1 CDS RPR_05740 NC_012730.1 974960 976324 R COG0739 Membrane proteins related to metalloendopeptidases; hypothetical protein complement(974960..976324) Rickettsia peacockii str. Rustic 7942244 YP_002916761.1 CDS RPR_05745 NC_012730.1 976563 976976 D COG0615 Cytidylyltransferase; glycerol-3-phosphate cytidyltransferase TagD 976563..976976 Rickettsia peacockii str. Rustic 7942245 YP_002916762.1 CDS RPR_05750 NC_012730.1 977147 978094 D COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2; cytochrome c oxidase polypeptide II 977147..978094 Rickettsia peacockii str. Rustic 7942246 YP_002916763.1 CDS RPR_05755 NC_012730.1 978287 978670 D COG0110 Acetyltransferase (isoleucine patch superfamily); hypothetical protein 978287..978670 Rickettsia peacockii str. Rustic 7941999 YP_002916764.1 CDS RPR_05760 NC_012730.1 978676 980274 D COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; cytochrome c oxidase polypeptide I 978676..980274 Rickettsia peacockii str. Rustic 7942412 YP_002916765.1 CDS RPR_05765 NC_012730.1 980484 981212 D COG2071 Predicted glutamine amidotransferases; glutamine amidotransferase, class I 980484..981212 Rickettsia peacockii str. Rustic 7942413 YP_002916766.1 CDS RPR_05770 NC_012730.1 981217 981618 R hypothetical protein complement(981217..981618) Rickettsia peacockii str. Rustic 7942414 YP_002916767.1 CDS RPR_05775 NC_012730.1 981768 984284 D COG2887 RecB family exonuclease; hypothetical protein 981768..984284 Rickettsia peacockii str. Rustic 7942415 YP_002916768.1 CDS RPR_05780 NC_012730.1 984506 985453 R COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF; muramoyltetrapeptide carboxypeptidase complement(984506..985453) Rickettsia peacockii str. Rustic 7942416 YP_002916769.1 CDS RPR_05785 NC_012730.1 985649 986605 R hypothetical protein complement(985649..986605) Rickettsia peacockii str. Rustic 7942417 YP_002916770.1 CDS RPR_05790 NC_012730.1 986692 988653 R COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); putative soluble lytic murein transglycosylase precursor complement(986692..988653) Rickettsia peacockii str. Rustic 7942418 YP_002916771.1 CDS dut NC_012730.1 988869 989315 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(988869..989315) Rickettsia peacockii str. Rustic 7942419 YP_002916772.1 CDS RPR_05800 NC_012730.1 989317 990231 R COG0616 Periplasmic serine proteases (ClpP class); signal peptide peptidase complement(989317..990231) Rickettsia peacockii str. Rustic 7942420 YP_002916773.1 CDS RPR_05805 NC_012730.1 990396 991040 R COG0526 Thiol-disulfide isomerase and thioredoxins; thiol:disulfide interchange protein complement(990396..991040) Rickettsia peacockii str. Rustic 7942421 YP_002916774.1 CDS RPR_05810 NC_012730.1 991248 991874 R COG3485 Protocatechuate 3,4-dioxygenase beta subunit; putative protocatechuate-3,4-dioxygenase, beta subunit complement(991248..991874) Rickettsia peacockii str. Rustic 7942422 YP_002916775.1 CDS RPR_05815 NC_012730.1 992015 993010 D COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1; FKBP-type peptidyl-prolyl cis-trans isomerase 992015..993010 Rickettsia peacockii str. Rustic 7942423 YP_002916776.1 CDS RPR_05820 NC_012730.1 993201 993581 D hypothetical protein 993201..993581 Rickettsia peacockii str. Rustic 7942424 YP_002916777.1 CDS RPR_05825 NC_012730.1 993591 994439 D COG0672 High-affinity Fe2+/Pb2+ permease; hypothetical protein 993591..994439 Rickettsia peacockii str. Rustic 7942425 YP_002916778.1 CDS RPR_05830 NC_012730.1 994469 995011 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 994469..995011 Rickettsia peacockii str. Rustic 7942426 YP_002916779.1 CDS RPR_05835 NC_012730.1 995309 995896 D COG2823 Predicted periplasmic or secreted lipoprotein; lipoprotein 995309..995896 Rickettsia peacockii str. Rustic 7942427 YP_002916780.1 CDS RPR_05840 NC_012730.1 995905 996867 D COG0797 Lipoproteins; rare lipoprotein A precursor 995905..996867 Rickettsia peacockii str. Rustic 7942428 YP_002916781.1 CDS RPR_05845 NC_012730.1 997034 997954 R COG1686 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein dacF precursor complement(997034..997954) Rickettsia peacockii str. Rustic 7942429 YP_002916782.1 CDS RPR_05860 NC_012730.1 999564 1001327 R COG1132 ABC-type multidrug transport system, ATPase and permease components; putative lipid A export ATP-binding/permease protein MsbA complement(999564..1001327) Rickettsia peacockii str. Rustic 7942430 YP_002916783.1 CDS ruvB NC_012730.1 1001320 1002348 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(1001320..1002348) Rickettsia peacockii str. Rustic 7942431 YP_002916784.1 CDS ruvA NC_012730.1 1003347 1003958 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(1003347..1003958) Rickettsia peacockii str. Rustic 7942432 YP_002916785.1 CDS RPR_05890 NC_012730.1 1004360 1005328 R COG3177 Uncharacterized conserved protein; putative cell filamentation proteins (fic) complement(1004360..1005328) Rickettsia peacockii str. Rustic 7942433 YP_002916786.1 CDS RPR_05895 NC_012730.1 1005541 1006821 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(1005541..1006821) Rickettsia peacockii str. Rustic 7942434 YP_002916787.1 CDS folE NC_012730.1 1006986 1007555 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(1006986..1007555) Rickettsia peacockii str. Rustic 7942435 YP_002916788.1 CDS RPR_05930 NC_012730.1 1010307 1011047 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1010307..1011047 Rickettsia peacockii str. Rustic 7942438 YP_002916789.1 CDS pyrG NC_012730.1 1011050 1012663 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1011050..1012663 Rickettsia peacockii str. Rustic 7942439 YP_002916790.1 CDS RPR_05940 NC_012730.1 1012874 1014397 D COG3202 ATP/ADP translocase; ADP,ATP carrier protein 1012874..1014397 Rickettsia peacockii str. Rustic 7942440 YP_002916791.1 CDS RPR_05955 NC_012730.1 1015855 1016820 D Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 1015855..1016820 Rickettsia peacockii str. Rustic 7942441 YP_002916792.1 CDS RPR_06030 NC_012730.1 1022704 1023222 R COG1495 Disulfide bond formation protein DsbB; hypothetical protein complement(1022704..1023222) Rickettsia peacockii str. Rustic 7942442 YP_002916793.1 CDS lysK NC_012730.1 1023402 1024970 D class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase 1023402..1024970 Rickettsia peacockii str. Rustic 7942443 YP_002916794.1 CDS RPR_06040 NC_012730.1 1025104 1026036 D COG0679 Predicted permeases; hypothetical protein 1025104..1026036 Rickettsia peacockii str. Rustic 7942444 YP_002916795.1 CDS RPR_06045 NC_012730.1 1026176 1028479 D NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 1026176..1028479 Rickettsia peacockii str. Rustic 7942445 YP_002916796.1 CDS RPR_06055 NC_012730.1 1029080 1030402 D hypothetical protein 1029080..1030402 Rickettsia peacockii str. Rustic 7942446 YP_002916797.1 CDS RPR_06070 NC_012730.1 1032649 1033743 D COG2801 Transposase and inactivated derivatives; transposase ISRpe1 1032649..1033743 Rickettsia peacockii str. Rustic 7942447 YP_002916798.1 CDS RPR_06080 NC_012730.1 1034115 1035332 R COG0477 Permeases of the major facilitator superfamily; proline/betaine transporter complement(1034115..1035332) Rickettsia peacockii str. Rustic 7942448 YP_002916799.1 CDS RPR_06085 NC_012730.1 1035569 1035817 D COG2002 Regulators of stationary/sporulation gene expression; hypothetical protein 1035569..1035817 Rickettsia peacockii str. Rustic 7942449 YP_002916800.1 CDS RPR_06090 NC_012730.1 1035810 1036196 D COG4374 Uncharacterized protein conserved in bacteria; hypothetical protein 1035810..1036196 Rickettsia peacockii str. Rustic 7942450 YP_002916801.1 CDS RPR_06095 NC_012730.1 1036464 1037558 D COG2801 Transposase and inactivated derivatives; transposase ISRpe1 1036464..1037558 Rickettsia peacockii str. Rustic 7942451 YP_002916802.1 CDS rpsT NC_012730.1 1037811 1038089 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(1037811..1038089) Rickettsia peacockii str. Rustic 7942453 YP_002916803.1 CDS rplQ NC_012730.1 1038108 1038518 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(1038108..1038518) Rickettsia peacockii str. Rustic 7942454 YP_002916804.1 CDS RPR_06110 NC_012730.1 1038529 1039551 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(1038529..1039551) Rickettsia peacockii str. Rustic 7942455 YP_002916805.1 CDS RPR_06115 NC_012730.1 1039570 1039953 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(1039570..1039953) Rickettsia peacockii str. Rustic 7942456 YP_002916806.1 CDS rpsM NC_012730.1 1039978 1040355 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(1039978..1040355) Rickettsia peacockii str. Rustic 7942457 YP_002916807.1 CDS adk NC_012730.1 1040414 1041052 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(1040414..1041052) Rickettsia peacockii str. Rustic 7942458 YP_002916808.1 CDS secY NC_012730.1 1041068 1042369 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(1041068..1042369) Rickettsia peacockii str. Rustic 7942459 YP_002916809.1 CDS rplO NC_012730.1 1042373 1042834 R late assembly protein; 50S ribosomal protein L15 complement(1042373..1042834) Rickettsia peacockii str. Rustic 7942460 YP_002916810.1 CDS rpmD NC_012730.1 1042848 1043039 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(1042848..1043039) Rickettsia peacockii str. Rustic 7942461 YP_002916811.1 CDS rpsE NC_012730.1 1043063 1043593 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(1043063..1043593) Rickettsia peacockii str. Rustic 7942462 YP_002916812.1 CDS rplR NC_012730.1 1043611 1043967 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(1043611..1043967) Rickettsia peacockii str. Rustic 7942463 YP_002916813.1 CDS rplF NC_012730.1 1043983 1044516 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(1043983..1044516) Rickettsia peacockii str. Rustic 7942464 YP_002916814.1 CDS rpsH NC_012730.1 1044525 1044923 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(1044525..1044923) Rickettsia peacockii str. Rustic 7942465 YP_002916815.1 CDS rpsN NC_012730.1 1044943 1045248 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(1044943..1045248) Rickettsia peacockii str. Rustic 7942466 YP_002916816.1 CDS rplE NC_012730.1 1045266 1045805 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(1045266..1045805) Rickettsia peacockii str. Rustic 7942467 YP_002916817.1 CDS rplX NC_012730.1 1045805 1046134 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(1045805..1046134) Rickettsia peacockii str. Rustic 7942468 YP_002916818.1 CDS rplN NC_012730.1 1046135 1046503 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(1046135..1046503) Rickettsia peacockii str. Rustic 7942469 YP_002916819.1 CDS rpsQ NC_012730.1 1046578 1046811 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(1046578..1046811) Rickettsia peacockii str. Rustic 7942470 YP_002916820.1 CDS rpmC NC_012730.1 1046813 1047028 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(1046813..1047028) Rickettsia peacockii str. Rustic 7942471 YP_002916821.1 CDS rplP NC_012730.1 1047021 1047431 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(1047021..1047431) Rickettsia peacockii str. Rustic 7942472 YP_002916822.1 CDS rpsC NC_012730.1 1047446 1048099 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(1047446..1048099) Rickettsia peacockii str. Rustic 7942473 YP_002916823.1 CDS rplV NC_012730.1 1048101 1048460 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(1048101..1048460) Rickettsia peacockii str. Rustic 7942474 YP_002916824.1 CDS rpsS NC_012730.1 1048469 1048747 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(1048469..1048747) Rickettsia peacockii str. Rustic 7942475 YP_002916825.1 CDS rplB NC_012730.1 1048772 1049593 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(1048772..1049593) Rickettsia peacockii str. Rustic 7942476 YP_002916826.1 CDS rplW NC_012730.1 1049594 1049890 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(1049594..1049890) Rickettsia peacockii str. Rustic 7942477 YP_002916827.1 CDS rplD NC_012730.1 1049887 1050510 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(1049887..1050510) Rickettsia peacockii str. Rustic 7942478 YP_002916828.1 CDS rplC NC_012730.1 1050621 1051268 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(1050621..1051268) Rickettsia peacockii str. Rustic 7942479 YP_002916829.1 CDS rpsJ NC_012730.1 1051269 1051586 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(1051269..1051586) Rickettsia peacockii str. Rustic 7942480 YP_002916830.1 CDS RPR_06240 NC_012730.1 1051583 1051717 R hypothetical protein complement(1051583..1051717) Rickettsia peacockii str. Rustic 7942481 YP_002916831.1 CDS RPR_06245 NC_012730.1 1051827 1053011 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(1051827..1053011) Rickettsia peacockii str. Rustic 7942482 YP_002916832.1 CDS RPR_06255 NC_012730.1 1053543 1054265 D COG0566 rRNA methylases; 23S rRNA Gm2251 methyltransferase 1053543..1054265 Rickettsia peacockii str. Rustic 7942485 YP_002916833.1 CDS RPR_06260 NC_012730.1 1054376 1054828 D hypothetical protein 1054376..1054828 Rickettsia peacockii str. Rustic 7942486 YP_002916834.1 CDS fumC NC_012730.1 1054825 1056216 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1054825..1056216 Rickettsia peacockii str. Rustic 7942487 YP_002916835.1 CDS RPR_06270 NC_012730.1 1056313 1056567 D COG4118 Antitoxin of toxin-antitoxin stability system; hypothetical protein 1056313..1056567 Rickettsia peacockii str. Rustic 7942488 YP_002916836.1 CDS RPR_06275 NC_012730.1 1056554 1056877 D hypothetical protein 1056554..1056877 Rickettsia peacockii str. Rustic 7942489 YP_002916837.1 CDS RPR_06280 NC_012730.1 1057217 1058575 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1057217..1058575 Rickettsia peacockii str. Rustic 7942490 YP_002916838.1 CDS RPR_06285 NC_012730.1 1058932 1059444 D hypothetical protein 1058932..1059444 Rickettsia peacockii str. Rustic 7942491 YP_002916839.1 CDS RPR_06290 NC_012730.1 1059676 1059990 D COG4574 Serine protease inhibitor ecotin; ecotin precursor 1059676..1059990 Rickettsia peacockii str. Rustic 7942492 YP_002916840.1 CDS RPR_06295 NC_012730.1 1060184 1060756 R COG0694 Thioredoxin-like proteins and domains; hypothetical protein complement(1060184..1060756) Rickettsia peacockii str. Rustic 7942248 YP_002916841.1 CDS RPR_06300 NC_012730.1 1061104 1062168 R COG0477 Permeases of the major facilitator superfamily; ampG protein complement(1061104..1062168) Rickettsia peacockii str. Rustic 7942249 YP_002916842.1 CDS RPR_06305 NC_012730.1 1062521 1063753 R COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase RhlE complement(1062521..1063753) Rickettsia peacockii str. Rustic 7942250 YP_002916843.1 CDS RPR_06310 NC_012730.1 1064265 1064477 R COG1278 Cold shock proteins; cold shock protein complement(1064265..1064477) Rickettsia peacockii str. Rustic 7942251 YP_002916844.1 CDS ksgA NC_012730.1 1065823 1066728 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(1065823..1066728) Rickettsia peacockii str. Rustic 7942253 YP_002916845.1 CDS RPR_06330 NC_012730.1 1066882 1067769 R COG0760 Parvulin-like peptidyl-prolyl isomerase; hypothetical protein complement(1066882..1067769) Rickettsia peacockii str. Rustic 7942254 YP_002916846.1 CDS RPR_06335 NC_012730.1 1067925 1070045 R COG1452 Organic solvent tolerance protein OstA; organic solvent tolerance protein complement(1067925..1070045) Rickettsia peacockii str. Rustic 7942255 YP_002916847.1 CDS xseA NC_012730.1 1070296 1071669 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1070296..1071669 Rickettsia peacockii str. Rustic 7942256 YP_002916848.1 CDS RPR_06355 NC_012730.1 1072345 1073127 D COG0708 Exonuclease III; exodeoxyribonuclease III 1072345..1073127 Rickettsia peacockii str. Rustic 7942257 YP_002916849.1 CDS RPR_06360 NC_012730.1 1073323 1073586 D COG4095 Uncharacterized conserved protein; hypothetical protein 1073323..1073586 Rickettsia peacockii str. Rustic 7942258 YP_002916850.1 CDS engA NC_012730.1 1073590 1074933 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1073590..1074933 Rickettsia peacockii str. Rustic 7942259 YP_002916851.1 CDS RPR_06410 NC_012730.1 1078858 1080294 R COG0661 Predicted unusual protein kinase; Ubiquinone biosynthesis monooxygenase UbiB complement(1078858..1080294) Rickettsia peacockii str. Rustic 7942260 YP_002916852.1 CDS ubiE NC_012730.1 1080442 1081188 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(1080442..1081188) Rickettsia peacockii str. Rustic 7942261 YP_002916853.1 CDS RPR_06420 NC_012730.1 1081217 1082038 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 1081217..1082038 Rickettsia peacockii str. Rustic 7942262 YP_002916854.1 CDS RPR_06445 NC_012730.1 1083981 1084229 D hypothetical protein 1083981..1084229 Rickettsia peacockii str. Rustic 7942263 YP_002916855.1 CDS RPR_06485 NC_012730.1 1086912 1087883 R COG0084 Mg-dependent DNase; TatD family deoxyribonuclease complement(1086912..1087883) Rickettsia peacockii str. Rustic 7942264 YP_002916856.1 CDS RPR_06490 NC_012730.1 1087936 1089462 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(1087936..1089462) Rickettsia peacockii str. Rustic 7942265 YP_002916857.1 CDS tmk NC_012730.1 1089459 1090070 R catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase complement(1089459..1090070) Rickettsia peacockii str. Rustic 7942266 YP_002916858.1 CDS RPR_06500 NC_012730.1 1090329 1091696 D COG0477 Permeases of the major facilitator superfamily; proline/betaine transporter 1090329..1091696 Rickettsia peacockii str. Rustic 7942267 YP_002916859.1 CDS ubiA NC_012730.1 1091847 1092695 R UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; 4-hydroxybenzoate polyprenyltransferase complement(1091847..1092695) Rickettsia peacockii str. Rustic 7942268 YP_002916860.1 CDS valS NC_012730.1 1093830 1096268 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1093830..1096268 Rickettsia peacockii str. Rustic 7942269 YP_002916861.1 CDS RPR_06535 NC_012730.1 1096237 1097037 D COG3475 LPS biosynthesis protein; LicD family protein 1096237..1097037 Rickettsia peacockii str. Rustic 7942270 YP_002916862.1 CDS RPR_06550 NC_012730.1 1098780 1100066 D COG1322 Uncharacterized protein conserved in bacteria; RmuC family protein 1098780..1100066 Rickettsia peacockii str. Rustic 7942271 YP_002916863.1 CDS RPR_06605 NC_012730.1 1105440 1105829 D COG5528 Predicted integral membrane protein; hypothetical protein 1105440..1105829 Rickettsia peacockii str. Rustic 7942272 YP_002916864.1 CDS clpX NC_012730.1 1106188 1107465 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(1106188..1107465) Rickettsia peacockii str. Rustic 7942273 YP_002916865.1 CDS RPR_06615 NC_012730.1 1107502 1108053 R COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; ribosomal-protein-alanine acetyltransferase complement(1107502..1108053) Rickettsia peacockii str. Rustic 7942274 YP_002916866.1 CDS RPR_06620 NC_012730.1 1108217 1108903 R COG0603 Predicted PP-loop superfamily ATPase; trans-regulatory protein ExsB complement(1108217..1108903) Rickettsia peacockii str. Rustic 7942275 YP_002916867.1 CDS RPR_06625 NC_012730.1 1108900 1109244 R COG1598 Uncharacterized conserved protein; HicB family protein complement(1108900..1109244) Rickettsia peacockii str. Rustic 7942276 YP_002916868.1 CDS RPR_06640 NC_012730.1 1109867 1111597 D COG1132 ABC-type multidrug transport system, ATPase and permease components; putative lipid A export ATP-binding/permease protein MsbA 1109867..1111597 Rickettsia peacockii str. Rustic 7942278 YP_002916869.1 CDS RPR_06645 NC_012730.1 1111900 1112148 D hypothetical protein 1111900..1112148 Rickettsia peacockii str. Rustic 7942279 YP_002916870.1 CDS RPR_06650 NC_012730.1 1112848 1113849 D COG0477 Permeases of the major facilitator superfamily; bicyclomycin resistance protein 1112848..1113849 Rickettsia peacockii str. Rustic 7942280 YP_002916871.1 CDS RPR_06655 NC_012730.1 1113982 1115337 D COG4591 ABC-type transport system, involved in lipoprotein release, permease component; lipoprotein releasing system transmembrane protein 1113982..1115337 Rickettsia peacockii str. Rustic 7942281 YP_002916872.1 CDS RPR_06660 NC_012730.1 1115330 1115995 D COG1136 ABC-type antimicrobial peptide transport system, ATPase component; lipoprotein releasing system ATP-binding protein 1115330..1115995 Rickettsia peacockii str. Rustic 7942282 YP_002916873.1 CDS RPR_06665 NC_012730.1 1116214 1118115 D hypothetical protein 1116214..1118115 Rickettsia peacockii str. Rustic 7942283 YP_002916874.1 CDS RPR_06670 NC_012730.1 1118190 1119464 D COG4536 Putative Mg2+ and Co2+ transporter CorB; magnesium and cobalt efflux protein 1118190..1119464 Rickettsia peacockii str. Rustic 7942284 YP_002916875.1 CDS RPR_06675 NC_012730.1 1119457 1121442 D COG1138 Cytochrome c biogenesis factor; heme chaperone--apocytochrome heme-lyase 1119457..1121442 Rickettsia peacockii str. Rustic 7942285 YP_002916876.1 CDS RPR_06685 NC_012730.1 1121752 1122846 D COG2801 Transposase and inactivated derivatives; transposase ISRpe1 1121752..1122846 Rickettsia peacockii str. Rustic 7942286 YP_002916877.1 CDS RPR_06690 NC_012730.1 1122889 1123329 R COG2867 Oligoketide cyclase/lipid transport protein; hypothetical protein complement(1122889..1123329) Rickettsia peacockii str. Rustic 7942287 YP_002916878.1 CDS RPR_06695 NC_012730.1 1123329 1123613 R COG5508 Uncharacterized conserved small protein; hypothetical protein complement(1123329..1123613) Rickettsia peacockii str. Rustic 7942288 YP_002916879.1 CDS RPR_06700 NC_012730.1 1123627 1124361 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1123627..1124361 Rickettsia peacockii str. Rustic 7942289 YP_002916880.1 CDS RPR_06705 NC_012730.1 1124450 1124686 R COG2155 Uncharacterized conserved protein; hypothetical protein complement(1124450..1124686) Rickettsia peacockii str. Rustic 7942290 YP_002916881.1 CDS RPR_06710 NC_012730.1 1124943 1127618 R As a result of a frameshift mutation, protein is truncated relative to rickettsial homologs but contains the entire acriflavin resistance protein domain; truncated acriflavin resistance protein complement(1124943..1127618) Rickettsia peacockii str. Rustic 7942291 YP_002916882.1 CDS RPR_06720 NC_012730.1 1128447 1128779 D COG0776 Bacterial nucleoid DNA-binding protein; DNA-binding protein HU 1128447..1128779 Rickettsia peacockii str. Rustic 7942163 YP_002916883.1 CDS RPR_06725 NC_012730.1 1128919 1129728 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1128919..1129728 Rickettsia peacockii str. Rustic 7942292 YP_002916884.1 CDS RPR_06730 NC_012730.1 1129938 1131287 D COG0541 Signal recognition particle GTPase; signal recognition particle protein 1129938..1131287 Rickettsia peacockii str. Rustic 7942293 YP_002916885.1 CDS lnt NC_012730.1 1136106 1137605 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(1136106..1137605) Rickettsia peacockii str. Rustic 7942294 YP_002916886.1 CDS RPR_06795 NC_012730.1 1137681 1138463 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 1137681..1138463 Rickettsia peacockii str. Rustic 7942295 YP_002916887.1 CDS RPR_06800 NC_012730.1 1138659 1139822 R hypothetical protein complement(1138659..1139822) Rickettsia peacockii str. Rustic 7942296 YP_002916888.1 CDS xerD NC_012730.1 1141039 1141959 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD complement(1141039..1141959) Rickettsia peacockii str. Rustic 7942297 YP_002916889.1 CDS RPR_06840 NC_012730.1 1143768 1144241 D COG4765 Uncharacterized protein conserved in bacteria; hypothetical protein 1143768..1144241 Rickettsia peacockii str. Rustic 7942299 YP_002916890.1 CDS RPR_06845 NC_012730.1 1144242 1145477 D COG3307 Lipid A core - O-antigen ligase and related enzymes; O-antigen polymerase 1144242..1145477 Rickettsia peacockii str. Rustic 7942300 YP_002916891.1 CDS RPR_06850 NC_012730.1 1145635 1146006 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 1145635..1146006 Rickettsia peacockii str. Rustic 7942301 YP_002916892.1 CDS RPR_06855 NC_012730.1 1146011 1146535 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1146011..1146535 Rickettsia peacockii str. Rustic 7942302 YP_002916893.1 CDS RPR_06860 NC_012730.1 1146513 1147241 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C 1146513..1147241 Rickettsia peacockii str. Rustic 7942303 YP_002916894.1 CDS RPR_06865 NC_012730.1 1147340 1148515 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 1147340..1148515 Rickettsia peacockii str. Rustic 7942304 YP_002916895.1 CDS RPR_06870 NC_012730.1 1148933 1149436 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 1148933..1149436 Rickettsia peacockii str. Rustic 7942305 YP_002916896.1 CDS RPR_06875 NC_012730.1 1149429 1149677 D COG0759 Uncharacterized conserved protein; hypothetical protein 1149429..1149677 Rickettsia peacockii str. Rustic 7942306 YP_002916897.1 CDS RPR_06880 NC_012730.1 1149775 1149978 D COG2350 Uncharacterized protein conserved in bacteria; hypothetical protein 1149775..1149978 Rickettsia peacockii str. Rustic 7942307 YP_002916898.1 CDS RPR_06885 NC_012730.1 1149971 1150522 D responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 1149971..1150522 Rickettsia peacockii str. Rustic 7942308 YP_002916899.1 CDS RPR_06890 NC_012730.1 1150780 1151214 R hypothetical protein complement(1150780..1151214) Rickettsia peacockii str. Rustic 7942309 YP_002916900.1 CDS RPR_06905 NC_012730.1 1151910 1152152 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(1151910..1152152) Rickettsia peacockii str. Rustic 7942310 YP_002916901.1 CDS RPR_06910 NC_012730.1 1152165 1154795 R hypothetical protein complement(1152165..1154795) Rickettsia peacockii str. Rustic 7942311 YP_002916902.1 CDS rimM NC_012730.1 1154855 1155352 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1154855..1155352 Rickettsia peacockii str. Rustic 7942312 YP_002916903.1 CDS RPR_06920 NC_012730.1 1155701 1158193 D COG2982 Uncharacterized protein involved in outer membrane biogenesis; outer membrane assembly protein 1155701..1158193 Rickettsia peacockii str. Rustic 7942313 YP_002916904.1 CDS RPR_06925 NC_012730.1 1158334 1158693 R COG0457 FOG: TPR repeat; hypothetical protein complement(1158334..1158693) Rickettsia peacockii str. Rustic 7942314 YP_002916905.1 CDS RPR_06930 NC_012730.1 1158846 1159061 R hypothetical protein complement(1158846..1159061) Rickettsia peacockii str. Rustic 7942315 YP_002916906.1 CDS RPR_06935 NC_012730.1 1159261 1159929 D COG1533 DNA repair photolyase; spore photoproduct lyase 1159261..1159929 Rickettsia peacockii str. Rustic 7942316 YP_002916907.1 CDS RPR_06940 NC_012730.1 1160211 1161128 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(1160211..1161128) Rickettsia peacockii str. Rustic 7942317 YP_002916908.1 CDS rpsD NC_012730.1 1161253 1161870 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1161253..1161870 Rickettsia peacockii str. Rustic 7942318 YP_002916909.1 CDS RPR_06950 NC_012730.1 1162060 1162701 D 30S ribosomal protein S4 1162060..1162701 Rickettsia peacockii str. Rustic 7942319 YP_002916910.1 CDS RPR_06965 NC_012730.1 1164385 1165557 R COG0438 Glycosyltransferase; glycosyltransferase complement(1164385..1165557) Rickettsia peacockii str. Rustic 7942320 YP_002916911.1 CDS RPR_06970 NC_012730.1 1165590 1166357 D COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); alpha/beta hydrolase family protein 1165590..1166357 Rickettsia peacockii str. Rustic 7942321 YP_002916912.1 CDS RPR_06975 NC_012730.1 1166367 1167161 D hypothetical protein 1166367..1167161 Rickettsia peacockii str. Rustic 7942322 YP_002916913.1 CDS RPR_06995 NC_012730.1 1168255 1170069 R COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyltransferase complement(1168255..1170069) Rickettsia peacockii str. Rustic 7942323 YP_002916914.1 CDS RPR_07000 NC_012730.1 1170506 1170991 R COG0500 SAM-dependent methyltransferases; methyltransferase complement(1170506..1170991) Rickettsia peacockii str. Rustic 7942324 YP_002916915.1 CDS RPR_07015 NC_012730.1 1172304 1173437 R COG0381 UDP-N-acetylglucosamine 2-epimerase; UDP-2-acetamido-2,6-dideoxy-beta-L-talose 2-epimerase complement(1172304..1173437) Rickettsia peacockii str. Rustic 7942325 YP_002916916.1 CDS RPR_07020 NC_012730.1 1173430 1174455 R COG1086 Predicted nucleoside-diphosphate sugar epimerases; capD protein complement(1173430..1174455) Rickettsia peacockii str. Rustic 7942326 YP_002916917.1 CDS RPR_07025 NC_012730.1 1174638 1175492 R COG1091 dTDP-4-dehydrorhamnose reductase; UDP-2-acetamido-2,6-dideoxy-beta-L-mannose 4-dehydrogenase complement(1174638..1175492) Rickettsia peacockii str. Rustic 7942327 YP_002916918.1 CDS RPR_07030 NC_012730.1 1175663 1175833 R COG3093 Plasmid maintenance system antidote protein; plasmid maintenance system antidote protein complement(1175663..1175833) Rickettsia peacockii str. Rustic 7942328 YP_002916919.1 CDS RPR_07035 NC_012730.1 1176091 1176555 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(1176091..1176555) Rickettsia peacockii str. Rustic 7942329 YP_002916920.1 CDS RPR_07055 NC_012730.1 1178530 1179468 D COG0330 Membrane protease subunits, stomatin/prohibitin homologs; hypothetical protein 1178530..1179468 Rickettsia peacockii str. Rustic 7942083 YP_002916921.1 CDS RPR_07060 NC_012730.1 1179550 1180152 D COG0450 Peroxiredoxin; thioredoxin peroxidase 1 1179550..1180152 Rickettsia peacockii str. Rustic 7942084 YP_002916922.1 CDS RPR_07080 NC_012730.1 1181557 1183887 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1181557..1183887 Rickettsia peacockii str. Rustic 7942085 YP_002916923.1 CDS gltX NC_012730.1 1183996 1185339 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1183996..1185339 Rickettsia peacockii str. Rustic 7942086 YP_002916924.1 CDS RPR_07100 NC_012730.1 1186806 1187063 R COG1471: Ribosomal protein S4E; ribosomal protein S4E complement(1186806..1187063) Rickettsia peacockii str. Rustic 7942087 YP_002916925.1 CDS RPR_07115 NC_012730.1 1188540 1189499 R COG0598 Mg2+ and Co2+ transporters; magnesium and cobalt transport protein CorA complement(1188540..1189499) Rickettsia peacockii str. Rustic 7942164 YP_002916926.1 CDS RPR_07145 NC_012730.1 1194252 1196051 R COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; nitrogen regulation protein complement(1194252..1196051) Rickettsia peacockii str. Rustic 7942089 YP_002916927.1 CDS rpsU NC_012730.1 1196415 1196615 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1196415..1196615) Rickettsia peacockii str. Rustic 7942090 YP_002916928.1 CDS RPR_07155 NC_012730.1 1196694 1197305 D COG5590 Uncharacterized conserved protein; hypothetical protein 1196694..1197305 Rickettsia peacockii str. Rustic 7942091 YP_002916929.1 CDS ileS NC_012730.1 1198604 1201882 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 1198604..1201882 Rickettsia peacockii str. Rustic 7942092 YP_002916930.1 CDS RPR_07220 NC_012730.1 1204227 1206224 R COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit; propionyl-CoA carboxylase biotin-containing subunit complement(1204227..1206224) Rickettsia peacockii str. Rustic 7942093 YP_002916931.1 CDS RPR_07225 NC_012730.1 1206322 1207866 R COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta); propionyl-CoA carboxylase carboxyltransferase subunit complement(1206322..1207866) Rickettsia peacockii str. Rustic 7942094 YP_002916932.1 CDS RPR_07235 NC_012730.1 1208430 1211852 D Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein; acylglycerophosphoethanolamine acyltransferase 1208430..1211852 Rickettsia peacockii str. Rustic 7942095 YP_002916933.1 CDS RPR_07240 NC_012730.1 1212097 1212330 R putative COG3070 Regulator of competence-specific genes, TfoX N-terminal domain; hypothetical protein complement(1212097..1212330) Rickettsia peacockii str. Rustic 7942096 YP_002916934.1 CDS RPR_07245 NC_012730.1 1212327 1213088 R COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components; Zinc/manganese ABC transporter permease protein complement(1212327..1213088) Rickettsia peacockii str. Rustic 7942097 YP_002916935.1 CDS RPR_07250 NC_012730.1 1213229 1214098 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 1213229..1214098 Rickettsia peacockii str. Rustic 7942098 YP_002916936.1 CDS gltX NC_012730.1 1214397 1215938 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1214397..1215938 Rickettsia peacockii str. Rustic 7942099 YP_002916937.1 CDS RPR_07260 NC_012730.1 1215935 1216471 D COG5342 Invasion protein B, involved in pathogenesis; hypothetical protein 1215935..1216471 Rickettsia peacockii str. Rustic 7942100 YP_002916938.1 CDS groEL NC_012730.1 1218258 1219901 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(1218258..1219901) Rickettsia peacockii str. Rustic 7942101 YP_002916939.1 CDS groES NC_012730.1 1219929 1220216 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(1219929..1220216) Rickettsia peacockii str. Rustic 7942102 YP_002916940.1 CDS RPR_07305 NC_012730.1 1222331 1222726 R hypothetical protein complement(1222331..1222726) Rickettsia peacockii str. Rustic 7942103 YP_002916941.1 CDS rph NC_012730.1 1223422 1224141 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(1223422..1224141) Rickettsia peacockii str. Rustic 7942104 YP_002916942.1 CDS RPR_07320 NC_012730.1 1224365 1224901 D with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 1224365..1224901 Rickettsia peacockii str. Rustic 7942105 YP_002916943.1 CDS RPR_07325 NC_012730.1 1225045 1226100 D COG0628 Predicted permease; putative permease PerM-like protein 1225045..1226100 Rickettsia peacockii str. Rustic 7942106 YP_002916944.1 CDS RPR_07330 NC_012730.1 1226116 1226784 D COG0593 ATPase involved in DNA replication initiation; hypothetical protein 1226116..1226784 Rickettsia peacockii str. Rustic 7942107 YP_002916945.1 CDS RPR_07360 NC_012730.1 1228301 1229395 R COG2801 Transposase and inactivated derivatives; transposase ISRpe1 complement(1228301..1229395) Rickettsia peacockii str. Rustic 7942108 YP_002916946.1 CDS obgE NC_012730.1 1230109 1231101 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(1230109..1231101) Rickettsia peacockii str. Rustic 7942109 YP_002916947.1 CDS gltA NC_012730.1 1231210 1232517 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(1231210..1232517) Rickettsia peacockii str. Rustic 7942110 YP_002916948.1 CDS RPR_07390 NC_012730.1 1233160 1233945 R COG1573 Uracil-DNA glycosylase; N-terminus of bacteriophage-type DNA polymerase complement(1233160..1233945) Rickettsia peacockii str. Rustic 7942111 YP_002916949.1 CDS RPR_07395 NC_012730.1 1233962 1234903 D COG0564 Pseudouridylate synthases, 23S RNA-specific; ribosomal large subunit pseudouridine synthase D 1233962..1234903 Rickettsia peacockii str. Rustic 7942112 YP_002916950.1 CDS RPR_07430 NC_012730.1 1236534 1238108 D fusion of hemK/trmB; N-terminal HemK domain transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; C-terminal; bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase 1236534..1238108 Rickettsia peacockii str. Rustic 7942113 YP_002916951.1 CDS RPR_07435 NC_012730.1 1238074 1239012 R COG0009 Putative translation factor (SUA5); hypothetical protein complement(1238074..1239012) Rickettsia peacockii str. Rustic 7942114 YP_002916952.1 CDS glyS NC_012730.1 1239009 1241003 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(1239009..1241003) Rickettsia peacockii str. Rustic 7942115 YP_002916953.1 CDS glyQ NC_012730.1 1241000 1241866 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(1241000..1241866) Rickettsia peacockii str. Rustic 7942116 YP_002916954.1 CDS RPR_07450 NC_012730.1 1241898 1242305 R COG1487 Predicted nucleic acid-binding protein, contains PIN domain; putative plasmid stability protein complement(1241898..1242305) Rickettsia peacockii str. Rustic 7942117 YP_002916955.1 CDS RPR_07455 NC_012730.1 1242302 1242547 R COG2161 Antitoxin of toxin-antitoxin stability system; hypothetical protein complement(1242302..1242547) Rickettsia peacockii str. Rustic 7942118 YP_002916956.1 CDS RPR_07460 NC_012730.1 1242634 1243263 R COG1636 Uncharacterized protein conserved in bacteria; putative cytoplasmic protein complement(1242634..1243263) Rickettsia peacockii str. Rustic 7942119 YP_002916957.1 CDS RPR_07480 NC_012730.1 1244743 1245693 R hypothetical protein complement(1244743..1245693) Rickettsia peacockii str. Rustic 7942120 YP_002916958.1 CDS RPR_07485 NC_012730.1 1245703 1246338 R COG1474 Cdc6-related protein, AAA superfamily ATPase; hypothetical protein complement(1245703..1246338) Rickettsia peacockii str. Rustic 7942121 YP_002916959.1 CDS RPR_07490 NC_012730.1 1246413 1247984 R hypothetical protein complement(1246413..1247984) Rickettsia peacockii str. Rustic 7942122 YP_002916960.1 CDS alaS NC_012730.1 1248183 1250819 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1248183..1250819 Rickettsia peacockii str. Rustic 7942123 YP_002916961.1 CDS truA NC_012730.1 1251028 1251765 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(1251028..1251765) Rickettsia peacockii str. Rustic 7942124 YP_002916962.1 CDS RPR_07505 NC_012730.1 1251861 1253765 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(1251861..1253765) Rickettsia peacockii str. Rustic 7942125 YP_002916963.1 CDS dnaG NC_012730.1 1253810 1255597 R synthesizes RNA primers at the replication forks; DNA primase complement(1253810..1255597) Rickettsia peacockii str. Rustic 7942126 YP_002916964.1 CDS RPR_07515 NC_012730.1 1255602 1256216 R COG0170 Dolichol kinase; hypothetical protein complement(1255602..1256216) Rickettsia peacockii str. Rustic 7942127 YP_002916965.1 CDS greA NC_012730.1 1256345 1256965 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 1256345..1256965 Rickettsia peacockii str. Rustic 7942128 YP_002916966.1 CDS RPR_07545 NC_012730.1 1258731 1259369 D COG2834 Outer membrane lipoprotein-sorting protein; hypothetical protein 1258731..1259369 Rickettsia peacockii str. Rustic 7942129 YP_002916967.1 CDS RPR_07550 NC_012730.1 1259591 1261120 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; rhe tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 1259591..1261120 Rickettsia peacockii str. Rustic 7942130 YP_002916968.1 CDS RPR_07555 NC_012730.1 1261140 1261463 D COG0718 Uncharacterized protein conserved in bacteria; hypothetical protein 1261140..1261463 Rickettsia peacockii str. Rustic 7942131 YP_002916969.1 CDS RPR_07575 NC_012730.1 1262341 1263036 R COG3577 Predicted aspartyl protease; retroviral aspartyl protease family protein complement(1262341..1263036) Rickettsia peacockii str. Rustic 7942132 YP_002916970.1 CDS RPR_07595 NC_012730.1 1264235 1264474 R COG2161 Antitoxin of toxin-antitoxin stability system; RelB complement(1264235..1264474) Rickettsia peacockii str. Rustic 7942133 YP_002916971.1 CDS RPR_07600 NC_012730.1 1264679 1265401 R COG1126 ABC-type polar amino acid transport system, ATPase component; hypothetical protein complement(1264679..1265401) Rickettsia peacockii str. Rustic 7942134 YP_002916972.1 CDS RPR_07605 NC_012730.1 1265405 1266169 R COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I; beta-lactamase superfamily hydrolase complement(1265405..1266169) Rickettsia peacockii str. Rustic 7942135 YP_002916973.1 CDS RPR_07610 NC_012730.1 1266184 1266828 D COG0671 Membrane-associated phospholipid phosphatase; hypothetical protein 1266184..1266828 Rickettsia peacockii str. Rustic 7942136 YP_002916974.1 CDS RPR_07615 NC_012730.1 1266922 1267185 D COG3077 DNA-damage-inducible protein J; DNA-damage-inducible protein J 1266922..1267185 Rickettsia peacockii str. Rustic 7942137 YP_002916975.1 CDS RPR_07620 NC_012730.1 1267525 1268634 D COG0795 Predicted permeases; hypothetical protein 1267525..1268634 Rickettsia peacockii str. Rustic 7942138 YP_002916976.1 CDS RPR_07625 NC_012730.1 1268640 1269104 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(1268640..1269104) Rickettsia peacockii str. Rustic 7942139 YP_002916977.1 CDS RPR_07630 NC_012730.1 1269300 1270445 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(1269300..1270445) Rickettsia peacockii str. Rustic 7942141 YP_002916978.1 CDS RPR_07635 NC_012730.1 1270449 1271384 R COG0732 Restriction endonuclease S subunits; putative type I restriction enzyme S subunit complement(1270449..1271384) Rickettsia peacockii str. Rustic 7942142 YP_002916979.1 CDS RPR_07675 NC_012730.1 1274205 1274720 R COG1434 Uncharacterized conserved protein; hypothetical protein complement(1274205..1274720) Rickettsia peacockii str. Rustic 7942143 YP_002916980.1 CDS lipB NC_012730.1 1274717 1275346 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(1274717..1275346) Rickettsia peacockii str. Rustic 7942144 YP_002916981.1 CDS RPR_07685 NC_012730.1 1275343 1276086 R COG3023 Negative regulator of beta-lactamase expression; N-acetylmuramoyl-L-alanine amidase complement(1275343..1276086) Rickettsia peacockii str. Rustic 7942145 YP_002916982.1 CDS rpsP NC_012730.1 1276583 1276918 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(1276583..1276918) Rickettsia peacockii str. Rustic 7942147 YP_002916983.1 CDS rpmG NC_012730.1 1276935 1277105 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(1276935..1277105) Rickettsia peacockii str. Rustic 7942148 YP_002916984.1 CDS mutL NC_012730.1 1277326 1279158 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(1277326..1279158) Rickettsia peacockii str. Rustic 7942149 YP_002916985.1 CDS RPR_07730 NC_012730.1 1281453 1282142 R COG0457 FOG: TPR repeat; TPR repeat-containing protein complement(1281453..1282142) Rickettsia peacockii str. Rustic 7942150 YP_002916986.1 CDS RPR_07735 NC_012730.1 1282279 1283553 D COG0477 Permeases of the major facilitator superfamily; proline/betaine transporter 1282279..1283553 Rickettsia peacockii str. Rustic 7942151 YP_002916987.1 CDS RPR_07740 NC_012730.1 1283537 1284376 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 1283537..1284376 Rickettsia peacockii str. Rustic 7942152 YP_002916988.1 CDS RPR_07755 NC_012730.1 1285611 1286048 R COG1981 Predicted membrane protein; hypothetical protein complement(1285611..1286048) Rickettsia peacockii str. Rustic 7942153 YP_002916989.1 CDS hemH NC_012730.1 1286060 1287100 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(1286060..1287100) Rickettsia peacockii str. Rustic 7942154 YP_002916990.1 CDS hemE NC_012730.1 1287057 1288097 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(1287057..1288097) Rickettsia peacockii str. Rustic 7942155 YP_002921997.1 CDS RPR_p01 NC_012732.1 601 1332 D COG1192 ATPases involved in chromosome partitioning; plasmid stability protein ParA 601..1332 Rickettsia peacockii str. Rustic 7942982 YP_002921998.1 CDS RPR_p02 NC_012732.1 1335 1583 D hypothetical protein 1335..1583 Rickettsia peacockii str. Rustic 7942963 YP_002921999.1 CDS RPR_p03 NC_012732.1 1598 2023 D hypothetical protein 1598..2023 Rickettsia peacockii str. Rustic 7942964 YP_002922000.1 CDS RPR_p04 NC_012732.1 2771 5110 D COG0593 ATPase involved in DNA replication initiation; DnaA-like protein 2771..5110 Rickettsia peacockii str. Rustic 7942965 YP_002922001.1 CDS RPR_p05 NC_012732.1 6542 7636 D COG2801 Transposase and inactivated derivatives; transposase ISRpe1 6542..7636 Rickettsia peacockii str. Rustic 7942966 YP_002922002.1 CDS RPR_p06 NC_012732.1 7673 8290 R COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; hypothetical protein complement(7673..8290) Rickettsia peacockii str. Rustic 7942967 YP_002922003.1 CDS RPR_p07 NC_012732.1 8287 9420 R COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit; putative phenylpropionate dioxygenase complement(8287..9420) Rickettsia peacockii str. Rustic 7942968 YP_002922004.1 CDS RPR_p08 NC_012732.1 9608 10375 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); short chain dehydrogenase/reductase family oxidoreductase complement(9608..10375) Rickettsia peacockii str. Rustic 7942969 YP_002922005.1 CDS RPR_p09 NC_012732.1 10402 11364 R COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III; 3-oxoacyl-ACP synthase III complement(10402..11364) Rickettsia peacockii str. Rustic 7942970 YP_002922006.1 CDS RPR_p10 NC_012732.1 12066 12290 D COG0236 Acyl carrier protein; hypothetical protein 12066..12290 Rickettsia peacockii str. Rustic 7942971 YP_002922007.1 CDS RPR_p11 NC_012732.1 12513 14279 D COG1132 ABC-type multidrug transport system, ATPase and permease components; ABC transporter 12513..14279 Rickettsia peacockii str. Rustic 7942972 YP_002922008.1 CDS RPR_p12 NC_012732.1 15813 16340 D COG0071 Molecular chaperone (small heat shock protein); small heat shock protein 15813..16340 Rickettsia peacockii str. Rustic 7942973 YP_002922009.1 CDS RPR_p13 NC_012732.1 16422 16886 D COG0071 Molecular chaperone (small heat shock protein); small heat shock protein 16422..16886 Rickettsia peacockii str. Rustic 7942974 YP_002922010.1 CDS RPR_p14 NC_012732.1 17189 18103 D COG5464 Uncharacterized conserved protein, transposase like; hypothetical protein 17189..18103 Rickettsia peacockii str. Rustic 7942975 YP_002922011.1 CDS RPR_p15 NC_012732.1 18158 19252 R COG2801 Transposase and inactivated derivatives; transposase ISRpe1 complement(18158..19252) Rickettsia peacockii str. Rustic 7942976 YP_002922012.1 CDS RPR_p16 NC_012732.1 21210 21569 R putative lipoprotein; hypothetical protein complement(21210..21569) Rickettsia peacockii str. Rustic 7942977 YP_002922013.1 CDS RPR_p17 NC_012732.1 22268 22609 R COG2076 Membrane transporters of cations and cationic drugs; SMR-type multi-drug efflux transporter complement(22268..22609) Rickettsia peacockii str. Rustic 7942978 YP_002922014.1 CDS RPR_p18 NC_012732.1 22652 23170 R COG0457 FOG: TPR repeat; TPR repeat-containing protein complement(22652..23170) Rickettsia peacockii str. Rustic 7942979 YP_002922015.1 CDS RPR_p19 NC_012732.1 23382 24794 R only 5' half of CDS has similarity to part of Sca4 producing apparent chimeric protein; hypothetical protein complement(23382..24794) Rickettsia peacockii str. Rustic 7942980 YP_002922016.1 CDS RPR_p20 NC_012732.1 24972 26018 R COG0419 ATPase involved in DNA repair, truncated relative to rickettsial homologs; hypothetical protein complement(24972..26018) Rickettsia peacockii str. Rustic 7942981 RPR_t07772 tRNA RPR_t07772 NC_012730.1 77826 77902 D tRNA-Asp 77826..77902 Rickettsia peacockii str. Rustic 7942939 RPR_t07774 tRNA RPR_t07774 NC_012730.1 149237 149311 D tRNA-OTHER 149237..149311 Rickettsia peacockii str. Rustic 7942361 RPR_t07776 tRNA RPR_t07776 NC_012730.1 153361 153436 R tRNA-Phe complement(153361..153436) Rickettsia peacockii str. Rustic 7942364 RPR_t07778 tRNA RPR_t07778 NC_012730.1 166666 166742 D tRNA-Arg 166666..166742 Rickettsia peacockii str. Rustic 7942374 RPR_t07780 tRNA RPR_t07780 NC_012730.1 168208 168282 D tRNA-Glu 168208..168282 Rickettsia peacockii str. Rustic 7942375 RPR_t07782 tRNA RPR_t07782 NC_012730.1 195424 195499 D tRNA-Thr 195424..195499 Rickettsia peacockii str. Rustic 7942394 RPR_t07784 tRNA RPR_t07784 NC_012730.1 248666 248757 D tRNA-Ser 248666..248757 Rickettsia peacockii str. Rustic 7942514 RPR_t07786 tRNA RPR_t07786 NC_012730.1 264686 264762 R tRNA-Met complement(264686..264762) Rickettsia peacockii str. Rustic 7942525 RPR_t07788 tRNA RPR_t07788 NC_012730.1 390517 390591 D tRNA-Asn 390517..390591 Rickettsia peacockii str. Rustic 7942706 RPR_t07790 tRNA RPR_t07790 NC_012730.1 446639 446713 D tRNA-Thr 446639..446713 Rickettsia peacockii str. Rustic 7942832 RPR_t07792 tRNA RPR_t07792 NC_012730.1 472801 472877 D tRNA-Met 472801..472877 Rickettsia peacockii str. Rustic 7942855 RPR_t07794 tRNA RPR_t07794 NC_012730.1 499745 499821 R tRNA-Val complement(499745..499821) Rickettsia peacockii str. Rustic 7942868 RPR_t07796 tRNA RPR_t07796 NC_012730.1 503992 504067 D tRNA-Ala 503992..504067 Rickettsia peacockii str. Rustic 7942873 RPR_t07798 tRNA RPR_t07798 NC_012730.1 516258 516334 D tRNA-Met 516258..516334 Rickettsia peacockii str. Rustic 7942002 RPR_t07800 tRNA RPR_t07800 NC_012730.1 579562 579636 R tRNA-Ala complement(579562..579636) Rickettsia peacockii str. Rustic 7942049 RPR_t07802 tRNA RPR_t07802 NC_012730.1 591345 591431 D tRNA-Leu 591345..591431 Rickettsia peacockii str. Rustic 7942057 RPR_t07804 tRNA RPR_t07804 NC_012730.1 596143 596217 D tRNA-Gly 596143..596217 Rickettsia peacockii str. Rustic 7942059 RPR_t07806 tRNA RPR_t07806 NC_012730.1 671700 671775 R tRNA-Trp complement(671700..671775) Rickettsia peacockii str. Rustic 7942599 RPR_t07808 tRNA RPR_t07808 NC_012730.1 778767 778856 R tRNA-Ser complement(778767..778856) Rickettsia peacockii str. Rustic 7942742 RPR_t07810 tRNA RPR_t07810 NC_012730.1 792903 792979 D tRNA-Arg 792903..792979 Rickettsia peacockii str. Rustic 7942755 RPR_t07812 tRNA RPR_t07812 NC_012730.1 793085 793159 R tRNA-Gln complement(793085..793159) Rickettsia peacockii str. Rustic 7942756 RPR_t07814 tRNA RPR_t07814 NC_012730.1 866303 866379 D tRNA-Arg 866303..866379 Rickettsia peacockii str. Rustic 7942168 RPR_t07816 tRNA RPR_t07816 NC_012730.1 900653 900729 R tRNA-Pro complement(900653..900729) Rickettsia peacockii str. Rustic 7942192 RPR_t07818 tRNA RPR_t07818 NC_012730.1 937758 937845 R tRNA-Ser complement(937758..937845) Rickettsia peacockii str. Rustic 7942212 RPR_t07820 tRNA RPR_t07820 NC_012730.1 1010042 1010118 R tRNA-Ile complement(1010042..1010118) Rickettsia peacockii str. Rustic 7942436 RPR_t07822 tRNA RPR_t07822 NC_012730.1 1010133 1010208 R tRNA-Lys complement(1010133..1010208) Rickettsia peacockii str. Rustic 7942437 RPR_t07824 tRNA RPR_t07824 NC_012730.1 1037639 1037714 R tRNA-Val complement(1037639..1037714) Rickettsia peacockii str. Rustic 7942452 RPR_t07826 tRNA RPR_t07826 NC_012730.1 1053059 1053132 R tRNA-Gly complement(1053059..1053132) Rickettsia peacockii str. Rustic 7942483 RPR_t07828 tRNA RPR_t07828 NC_012730.1 1053268 1053353 R tRNA-Tyr complement(1053268..1053353) Rickettsia peacockii str. Rustic 7942484 RPR_t07830 tRNA RPR_t07830 NC_012730.1 1064868 1064953 D tRNA-Leu 1064868..1064953 Rickettsia peacockii str. Rustic 7942252 RPR_t07832 tRNA RPR_t07832 NC_012730.1 1109588 1109664 D tRNA-His 1109588..1109664 Rickettsia peacockii str. Rustic 7942277 RPR_t07834 tRNA RPR_t07834 NC_012730.1 1141981 1142055 R tRNA-Cys complement(1141981..1142055) Rickettsia peacockii str. Rustic 7942298 RPR_t07836 tRNA RPR_t07836 NC_012730.1 1269141 1269225 R tRNA-Leu complement(1269141..1269225) Rickettsia peacockii str. Rustic 7942140 RPR_t07838 tRNA RPR_t07838 NC_012730.1 1276324 1276398 R tRNA-Thr complement(1276324..1276398) Rickettsia peacockii str. Rustic 7942146 RPR_r07840 rRNA RPR_r07840 NC_012730.1 301512 301626 R 5S ribosomal RNA complement(301512..301626) Rickettsia peacockii str. Rustic 7942556 RPR_r07841 rRNA RPR_r07841 NC_012730.1 301929 304659 R 23S ribosomal RNA complement(301929..304659) Rickettsia peacockii str. Rustic 7942557 RPR_r07842 rRNA RPR_r07842 NC_012730.1 1191449 1192956 R 16S ribosomal RNA complement(1191449..1192956) Rickettsia peacockii str. Rustic 7942088