-- dump date 20140620_033906 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 416276000001 SEQ_END SEQ_END NC_009897.1 15286 15286 DR NC_009897.1; contig end 15286..15286 Rickettsia massiliae MTU5 416276000002 SEQ_END SEQ_END NC_009900.1 1360898 1360898 DR NC_009900.1; contig end 1360898..1360898 Rickettsia massiliae MTU5 YP_001497185.1 CDS RMA_p01 NC_009897.1 106 2442 D hypothetical protein 106..2442 Rickettsia massiliae MTU5 5664847 YP_001497186.1 CDS RMA_p02 NC_009897.1 2693 2971 D hypothetical protein 2693..2971 Rickettsia massiliae MTU5 5664849 YP_001497187.1 CDS RMA_p03 NC_009897.1 2994 4574 R leucine-rich repeat-containing protein complement(2994..4574) Rickettsia massiliae MTU5 5664852 YP_001497188.1 CDS spoT22 NC_009897.1 4665 6200 R guanosine polyphosphate pyrophosphohydrolase/synthetase complement(4665..6200) Rickettsia massiliae MTU5 5664848 YP_001497189.1 CDS RMA_p05 NC_009897.1 7464 8015 D site-specific recombinase 7464..8015 Rickettsia massiliae MTU5 5664844 YP_001497190.1 CDS RMA_p06 NC_009897.1 8200 9243 R transposase complement(8200..9243) Rickettsia massiliae MTU5 5664845 YP_001497191.1 CDS RMA_p07 NC_009897.1 9242 9514 D hypothetical protein 9242..9514 Rickettsia massiliae MTU5 5664850 YP_001497192.1 CDS RMA_p08 NC_009897.1 10001 10312 D TPR repeat-containing protein 10001..10312 Rickettsia massiliae MTU5 5664851 YP_001497193.1 CDS RMA_p10 NC_009897.1 10933 12009 R hypothetical protein complement(10933..12009) Rickettsia massiliae MTU5 5664853 YP_001497194.1 CDS RMA_p11 NC_009897.1 11942 12316 R hypothetical protein complement(11942..12316) Rickettsia massiliae MTU5 5664843 YP_001497195.1 CDS RMA_p12 NC_009897.1 13299 13784 D hypothetical protein 13299..13784 Rickettsia massiliae MTU5 5664846 YP_001497196.1 CDS parA2 NC_009897.1 14197 14838 R plasmid stability protein ParA complement(14197..14838) Rickettsia massiliae MTU5 5664854 YP_001498897.1 CDS RMA_0001 NC_009900.1 1 822 D hypothetical protein 1..822 Rickettsia massiliae MTU5 5666189 YP_001498898.1 CDS trxA NC_009900.1 1134 1463 D thioredoxin 1134..1463 Rickettsia massiliae MTU5 5664855 YP_001498899.1 CDS rfbE NC_009900.1 1441 2223 D O-antigen export system ATP-binding protein RfbE 1441..2223 Rickettsia massiliae MTU5 5665879 YP_001498900.1 CDS rfbA NC_009900.1 2224 3000 D O-antigen export system permease protein RfbA 2224..3000 Rickettsia massiliae MTU5 5665880 YP_001498901.1 CDS gltD NC_009900.1 2997 6035 D similar to related oxidoreductases; undetermined function; putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase 2997..6035 Rickettsia massiliae MTU5 5665881 YP_001498902.1 CDS lpxA NC_009900.1 6502 7314 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(6502..7314) Rickettsia massiliae MTU5 5665680 YP_001498903.1 CDS fabZ NC_009900.1 7321 7758 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(7321..7758) Rickettsia massiliae MTU5 5665681 YP_001498904.1 CDS lpxD NC_009900.1 7942 8979 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(7942..8979) Rickettsia massiliae MTU5 5665682 YP_001498905.1 CDS RMA_0017 NC_009900.1 14440 14973 R putative P-loop hydrolase complement(14440..14973) Rickettsia massiliae MTU5 5665536 YP_001498906.1 CDS znuA NC_009900.1 14961 15938 R Zinc/manganese ABC transporter substrate binding protein complement(14961..15938) Rickettsia massiliae MTU5 5665537 YP_001498907.1 CDS pcnB NC_009900.1 15914 17170 R Poly(A) polymerase complement(15914..17170) Rickettsia massiliae MTU5 5665798 YP_001498908.1 CDS sca1 NC_009900.1 18551 23920 D cell surface antigen Sca1 18551..23920 Rickettsia massiliae MTU5 5665799 YP_001498909.1 CDS atpF NC_009900.1 27840 28349 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(27840..28349) Rickettsia massiliae MTU5 5665424 YP_001498910.1 CDS atpX NC_009900.1 28346 28819 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.; F0F1 ATP synthase subunit B' complement(28346..28819) Rickettsia massiliae MTU5 5665667 YP_001498911.1 CDS atpE NC_009900.1 28838 29074 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(28838..29074) Rickettsia massiliae MTU5 5665668 YP_001498912.1 CDS atpB NC_009900.1 29133 29879 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(29133..29879) Rickettsia massiliae MTU5 5665669 YP_001498913.1 CDS RMA_0029 NC_009900.1 29866 30234 R hypothetical protein complement(29866..30234) Rickettsia massiliae MTU5 5665566 YP_001498914.1 CDS dsbG NC_009900.1 30240 31088 R protein-disulfide isomerase complement(30240..31088) Rickettsia massiliae MTU5 5665567 YP_001498915.1 CDS RMA_0031 NC_009900.1 31191 31778 D transcriptional regulator 31191..31778 Rickettsia massiliae MTU5 5665226 YP_001498916.1 CDS RMA_0032 NC_009900.1 32025 33644 R putative methyltransferase complement(32025..33644) Rickettsia massiliae MTU5 5665227 YP_001498917.1 CDS recF NC_009900.1 34061 35143 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F complement(34061..35143) Rickettsia massiliae MTU5 5665228 YP_001498918.1 CDS RMA_0043 NC_009900.1 37989 38660 R hypothetical protein complement(37989..38660) Rickettsia massiliae MTU5 5664909 YP_001498919.1 CDS RMA_0048 NC_009900.1 41691 42284 D Sco2 protein precursor 41691..42284 Rickettsia massiliae MTU5 5665823 YP_001498920.1 CDS RMA_0049 NC_009900.1 42295 42864 R hypothetical protein complement(42295..42864) Rickettsia massiliae MTU5 5665121 YP_001498921.1 CDS cvpA NC_009900.1 42929 43600 D putative colicin V production membrane protein 42929..43600 Rickettsia massiliae MTU5 5665122 YP_001498922.1 CDS RMA_0056 NC_009900.1 46959 48290 R hypothetical protein complement(46959..48290) Rickettsia massiliae MTU5 5664957 YP_001498923.1 CDS RMA_0057 NC_009900.1 48388 49059 R hypothetical protein complement(48388..49059) Rickettsia massiliae MTU5 5664958 YP_001498924.1 CDS clpB NC_009900.1 53007 55589 D chaperone ClpB 53007..55589 Rickettsia massiliae MTU5 5665719 YP_001498925.1 CDS RMA_0064 NC_009900.1 55829 56368 R hypothetical protein complement(55829..56368) Rickettsia massiliae MTU5 5665180 YP_001498926.1 CDS gcp NC_009900.1 56448 57482 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease complement(56448..57482) Rickettsia massiliae MTU5 5665181 YP_001498927.1 CDS aco1 NC_009900.1 57665 58858 R Acyl-CoA desaturase 1 complement(57665..58858) Rickettsia massiliae MTU5 5665811 YP_001498928.1 CDS rpsF NC_009900.1 59709 60146 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 59709..60146 Rickettsia massiliae MTU5 5665813 YP_001498929.1 CDS rpsR NC_009900.1 60171 60458 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 60171..60458 Rickettsia massiliae MTU5 5666073 YP_001498930.1 CDS rplI NC_009900.1 60470 60985 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 60470..60985 Rickettsia massiliae MTU5 5666074 YP_001498931.1 CDS tilS NC_009900.1 61279 62712 D tRNA(Ile)-lysidine synthetase 61279..62712 Rickettsia massiliae MTU5 5665588 YP_001498932.1 CDS ftsH NC_009900.1 62810 64729 D ATP-dependent metalloprotease FtsH 62810..64729 Rickettsia massiliae MTU5 5665589 YP_001498933.1 CDS sdhB NC_009900.1 66128 66913 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 66128..66913 Rickettsia massiliae MTU5 5664880 YP_001498934.1 CDS RMA_0077 NC_009900.1 67259 68515 R hypothetical protein complement(67259..68515) Rickettsia massiliae MTU5 5666157 YP_001498935.1 CDS lgt NC_009900.1 68458 69252 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(68458..69252) Rickettsia massiliae MTU5 5666158 YP_001498936.1 CDS RMA_0079 NC_009900.1 69482 70645 D hypothetical protein 69482..70645 Rickettsia massiliae MTU5 5665060 YP_001498937.1 CDS yidC NC_009900.1 70830 72512 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 70830..72512 Rickettsia massiliae MTU5 5665061 YP_001498938.1 CDS pgsA NC_009900.1 72512 73057 D CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 72512..73057 Rickettsia massiliae MTU5 5666143 YP_001498939.1 CDS RMA_0082 NC_009900.1 73071 73631 D hypothetical protein 73071..73631 Rickettsia massiliae MTU5 5666144 YP_001498940.1 CDS RMA_0083 NC_009900.1 73804 74223 R hypothetical protein complement(73804..74223) Rickettsia massiliae MTU5 5666145 YP_001498941.1 CDS RMA_0084 NC_009900.1 74418 74849 D tellurite resistance protein-like protein 74418..74849 Rickettsia massiliae MTU5 5665803 YP_001498942.1 CDS def3 NC_009900.1 76181 76879 R polypeptide deformylase complement(76181..76879) Rickettsia massiliae MTU5 5666191 YP_001498943.1 CDS tlc1 NC_009900.1 77058 78560 D ATP/ADP translocase 77058..78560 Rickettsia massiliae MTU5 5666192 YP_001498944.1 CDS uhpC NC_009900.1 78564 79883 D sugar phosphate permease 78564..79883 Rickettsia massiliae MTU5 5664923 YP_001498945.1 CDS ndk NC_009900.1 79902 80336 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 79902..80336 Rickettsia massiliae MTU5 5664924 YP_001498946.1 CDS gidA NC_009900.1 80340 82208 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 80340..82208 Rickettsia massiliae MTU5 5665112 YP_001498947.1 CDS gidB NC_009900.1 82186 82767 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 82186..82767 Rickettsia massiliae MTU5 5665113 YP_001498948.1 CDS soj NC_009900.1 82764 83531 D chromosome partitioning ATPase 82764..83531 Rickettsia massiliae MTU5 5665114 YP_001498949.1 CDS RMA_0094 NC_009900.1 83518 84381 D ParB-like partition protein 83518..84381 Rickettsia massiliae MTU5 5665024 YP_001498950.1 CDS abcT1 NC_009900.1 84643 86310 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 84643..86310 Rickettsia massiliae MTU5 5665025 YP_001498951.1 CDS RMA_0096 NC_009900.1 86301 86630 D hypothetical protein 86301..86630 Rickettsia massiliae MTU5 5666182 YP_001498952.1 CDS kdsA NC_009900.1 86663 87490 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 86663..87490 Rickettsia massiliae MTU5 5666183 YP_001498953.1 CDS iscA1 NC_009900.1 89522 89854 R Iron-sulfur cluster assembly accessory protein complement(89522..89854) Rickettsia massiliae MTU5 5666274 YP_001498954.1 CDS dgt NC_009900.1 90109 91269 D dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 90109..91269 Rickettsia massiliae MTU5 5666275 YP_001498955.1 CDS argS NC_009900.1 91413 93149 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 91413..93149 Rickettsia massiliae MTU5 5666276 YP_001498956.1 CDS RMA_0104 NC_009900.1 93304 93996 D hypothetical protein 93304..93996 Rickettsia massiliae MTU5 5665817 YP_001498957.1 CDS parC NC_009900.1 94187 96400 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 94187..96400 Rickettsia massiliae MTU5 5665818 YP_001498958.1 CDS RMA_0106 NC_009900.1 97617 98939 R hypothetical protein complement(97617..98939) Rickettsia massiliae MTU5 5665220 YP_001498959.1 CDS dcd NC_009900.1 99203 99775 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 99203..99775 Rickettsia massiliae MTU5 5665221 YP_001498960.1 CDS secB NC_009900.1 99809 100279 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 99809..100279 Rickettsia massiliae MTU5 5665222 YP_001498961.1 CDS czcR NC_009900.1 100486 101217 D transcriptional activator protein CzcR 100486..101217 Rickettsia massiliae MTU5 5665726 YP_001498962.1 CDS queF NC_009900.1 101221 102042 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 101221..102042 Rickettsia massiliae MTU5 5665727 YP_001498963.1 CDS RMA_0111 NC_009900.1 102367 102933 R hypothetical protein complement(102367..102933) Rickettsia massiliae MTU5 5665728 YP_001498964.1 CDS pntB NC_009900.1 102982 104409 R NAD(p) transhydrogenase subunit beta complement(102982..104409) Rickettsia massiliae MTU5 5665594 YP_001498965.1 CDS ompW NC_009900.1 104517 105251 R OmpW family outer-membrane protein complement(104517..105251) Rickettsia massiliae MTU5 5665595 YP_001498966.1 CDS sam NC_009900.1 105400 106290 D S-adenosylmethionine transporter 105400..106290 Rickettsia massiliae MTU5 5665912 YP_001498967.1 CDS proP1 NC_009900.1 106268 107533 D proline/betaine transporter 106268..107533 Rickettsia massiliae MTU5 5665913 YP_001498968.1 CDS RMA_0116 NC_009900.1 107530 108024 D hypothetical protein 107530..108024 Rickettsia massiliae MTU5 5665914 YP_001498969.1 CDS secG NC_009900.1 108366 108668 D preprotein translocase subunit SecG 108366..108668 Rickettsia massiliae MTU5 5665083 YP_001498970.1 CDS sca2 NC_009900.1 109631 115048 R cell surface antigen Sca2 complement(109631..115048) Rickettsia massiliae MTU5 5665013 YP_001498971.1 CDS cysS NC_009900.1 115281 116660 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 115281..116660 Rickettsia massiliae MTU5 5665693 YP_001498972.1 CDS rpsB NC_009900.1 116853 117791 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 116853..117791 Rickettsia massiliae MTU5 5665694 YP_001498973.1 CDS tsf NC_009900.1 117979 118908 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 117979..118908 Rickettsia massiliae MTU5 5665490 YP_001498974.1 CDS kdtA NC_009900.1 120427 121851 R catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase complement(120427..121851) Rickettsia massiliae MTU5 5665026 YP_001498975.1 CDS RMA_0126 NC_009900.1 121797 122477 R hypothetical protein complement(121797..122477) Rickettsia massiliae MTU5 5665027 YP_001498976.1 CDS aatA NC_009900.1 122625 123845 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(122625..123845) Rickettsia massiliae MTU5 5665028 YP_001498977.1 CDS RMA_0128 NC_009900.1 123890 124153 R hypothetical protein complement(123890..124153) Rickettsia massiliae MTU5 5665874 YP_001498978.1 CDS RMA_0129 NC_009900.1 124146 124397 R antitoxin of toxin-antitoxin complement(124146..124397) Rickettsia massiliae MTU5 5665875 YP_001498979.1 CDS RMA_0130 NC_009900.1 124539 125543 D hypothetical protein 124539..125543 Rickettsia massiliae MTU5 5665199 YP_001498980.1 CDS vacJ NC_009900.1 125506 126303 D VacJ lipoprotein precursor 125506..126303 Rickettsia massiliae MTU5 5665200 YP_001498981.1 CDS RMA_0132 NC_009900.1 126200 126922 D related to toluene tolerance; ABC transporter 126200..126922 Rickettsia massiliae MTU5 5665201 YP_001498982.1 CDS prs NC_009900.1 127100 128128 D ribose-phosphate pyrophosphokinase 127100..128128 Rickettsia massiliae MTU5 5665528 YP_001498983.1 CDS alr NC_009900.1 128059 129192 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 128059..129192 Rickettsia massiliae MTU5 5665529 YP_001498984.1 CDS RMA_0135 NC_009900.1 129330 130124 D ABC transporter permease 129330..130124 Rickettsia massiliae MTU5 5665530 YP_001498985.1 CDS mkl NC_009900.1 130194 131033 D ribonucleotide ABC transporter ATP-binding protein 130194..131033 Rickettsia massiliae MTU5 5665229 YP_001498986.1 CDS RMA_0137 NC_009900.1 131035 131283 D hypothetical protein 131035..131283 Rickettsia massiliae MTU5 5665230 YP_001498987.1 CDS RMA_0138 NC_009900.1 132534 132911 R hypothetical protein complement(132534..132911) Rickettsia massiliae MTU5 5666041 YP_001498988.1 CDS RMA_0139 NC_009900.1 132927 133361 R hypothetical protein complement(132927..133361) Rickettsia massiliae MTU5 5666042 YP_001498989.1 CDS rpmB NC_009900.1 133727 134020 D required for 70S ribosome assembly; 50S ribosomal protein L28 133727..134020 Rickettsia massiliae MTU5 5666043 YP_001498990.1 CDS rpmE NC_009900.1 134011 134253 D RpmE; RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 134011..134253 Rickettsia massiliae MTU5 5665266 YP_001498991.1 CDS engB NC_009900.1 134647 135288 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 134647..135288 Rickettsia massiliae MTU5 5665084 YP_001498992.1 CDS argB NC_009900.1 135236 136159 D acetylglutamate kinase 135236..136159 Rickettsia massiliae MTU5 5665268 YP_001498993.1 CDS virB3 NC_009900.1 136172 136459 D type IV secretion system protein VirB3 136172..136459 Rickettsia massiliae MTU5 5665604 YP_001498994.1 CDS virB4-1 NC_009900.1 136521 138965 D type IV secretion system ATPase VirB4 136521..138965 Rickettsia massiliae MTU5 5665605 YP_001498995.1 CDS virB6-1 NC_009900.1 139083 142493 D VirB6 139083..142493 Rickettsia massiliae MTU5 5664963 YP_001498996.1 CDS virB6-2 NC_009900.1 142468 144465 D VirB6 142468..144465 Rickettsia massiliae MTU5 5664964 YP_001498997.1 CDS virB6-3 NC_009900.1 144472 147372 D VirB6 144472..147372 Rickettsia massiliae MTU5 5664965 YP_001498998.1 CDS virB6-4 NC_009900.1 147547 150225 D VirB6 147547..150225 Rickettsia massiliae MTU5 5665188 YP_001498999.1 CDS trmD NC_009900.1 157072 157812 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 157072..157812 Rickettsia massiliae MTU5 5665949 YP_001499000.1 CDS rplS NC_009900.1 157839 158255 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 157839..158255 Rickettsia massiliae MTU5 5665950 YP_001499001.1 CDS RMA_0160 NC_009900.1 158428 158664 R hypothetical protein complement(158428..158664) Rickettsia massiliae MTU5 5665478 YP_001499002.1 CDS secF NC_009900.1 158731 159663 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 158731..159663 Rickettsia massiliae MTU5 5665479 YP_001499003.1 CDS nuoF NC_009900.1 159788 161053 D part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 159788..161053 Rickettsia massiliae MTU5 5666017 YP_001499004.1 CDS lepB NC_009900.1 161234 162037 D Signal peptidase I 161234..162037 Rickettsia massiliae MTU5 5666018 YP_001499005.1 CDS rnc NC_009900.1 162037 162720 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 162037..162720 Rickettsia massiliae MTU5 5666019 YP_001499006.1 CDS era NC_009900.1 162701 163744 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 162701..163744 Rickettsia massiliae MTU5 5664994 YP_001499007.1 CDS ruvC NC_009900.1 163856 164335 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 163856..164335 Rickettsia massiliae MTU5 5664995 YP_001499008.1 CDS RMA_0167 NC_009900.1 164328 165029 D tRNA/rRNA methyltransferase 164328..165029 Rickettsia massiliae MTU5 5664996 YP_001499009.1 CDS RMA_0168 NC_009900.1 165010 165396 R nucleotidyltransferase substrate binding protein complement(165010..165396) Rickettsia massiliae MTU5 5665626 YP_001499010.1 CDS RMA_0169 NC_009900.1 165377 165682 R nucleotidyltransferase domain-containing protein complement(165377..165682) Rickettsia massiliae MTU5 5665627 YP_001499011.1 CDS RMA_0170 NC_009900.1 165687 166784 R putative nucleoside-diphosphate-sugar epimerase complement(165687..166784) Rickettsia massiliae MTU5 5665786 YP_001499012.1 CDS mrp NC_009900.1 166730 167692 R hypothetical protein complement(166730..167692) Rickettsia massiliae MTU5 5665787 YP_001499013.1 CDS hflK NC_009900.1 167794 168834 D protease activity modulator HflK 167794..168834 Rickettsia massiliae MTU5 5665788 YP_001499014.1 CDS hflC2 NC_009900.1 168927 169787 D membrane protease subunit stomatin/prohibitin-like protein 168927..169787 Rickettsia massiliae MTU5 5665792 YP_001499015.1 CDS htrA NC_009900.1 169810 171351 D serine protease 169810..171351 Rickettsia massiliae MTU5 5665793 YP_001499016.1 CDS RMA_0175 NC_009900.1 171386 172129 D hypothetical protein 171386..172129 Rickettsia massiliae MTU5 5665794 YP_001499017.1 CDS sdhC NC_009900.1 172282 172656 D succinate dehydrogenase cytochrome b-556 subunit 172282..172656 Rickettsia massiliae MTU5 5665869 YP_001499018.1 CDS sdhD NC_009900.1 172806 173183 D succinate dehydrogenase hydrophobic membrane anchor protein 172806..173183 Rickettsia massiliae MTU5 5665870 YP_001499019.1 CDS sdhA NC_009900.1 173320 175119 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 173320..175119 Rickettsia massiliae MTU5 5665654 YP_001499020.1 CDS yqiY NC_009900.1 175222 175878 D amino acid ABC transporter permease 175222..175878 Rickettsia massiliae MTU5 5665655 YP_001499021.1 CDS rpsL NC_009900.1 175948 176427 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 175948..176427 Rickettsia massiliae MTU5 5665656 YP_001499022.1 CDS rpsG NC_009900.1 176454 176936 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 176454..176936 Rickettsia massiliae MTU5 5665701 YP_001499023.1 CDS fusA NC_009900.1 176946 179042 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 176946..179042 Rickettsia massiliae MTU5 5665702 YP_001499024.1 CDS secE NC_009900.1 179358 179666 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 179358..179666 Rickettsia massiliae MTU5 5665274 YP_001499025.1 CDS nusG NC_009900.1 179679 180260 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 179679..180260 Rickettsia massiliae MTU5 5664890 YP_001499026.1 CDS rplK NC_009900.1 180533 180970 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 180533..180970 Rickettsia massiliae MTU5 5664891 YP_001499027.1 CDS rplA NC_009900.1 180970 181695 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 180970..181695 Rickettsia massiliae MTU5 5665091 YP_001499028.1 CDS rplJ NC_009900.1 181806 182315 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 181806..182315 Rickettsia massiliae MTU5 5665092 YP_001499029.1 CDS rplL NC_009900.1 182459 182887 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 182459..182887 Rickettsia massiliae MTU5 5665093 YP_001499030.1 CDS rpoB NC_009900.1 183736 187857 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 183736..187857 Rickettsia massiliae MTU5 5665053 YP_001499031.1 CDS rpoC NC_009900.1 188111 192235 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 188111..192235 Rickettsia massiliae MTU5 5665054 YP_001499032.1 CDS RMA_0191 NC_009900.1 192639 193814 R hypothetical protein complement(192639..193814) Rickettsia massiliae MTU5 5665055 YP_001499033.1 CDS pepA NC_009900.1 193974 195476 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 193974..195476 Rickettsia massiliae MTU5 5665902 YP_001499034.1 CDS RMA_0193 NC_009900.1 195663 196478 D chromosome partitioning protein-like protein 195663..196478 Rickettsia massiliae MTU5 5665903 YP_001499035.1 CDS RMA_0194 NC_009900.1 196555 197025 D hypothetical protein 196555..197025 Rickettsia massiliae MTU5 5665050 YP_001499036.1 CDS aspS NC_009900.1 197102 198925 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 197102..198925 Rickettsia massiliae MTU5 5665051 YP_001499037.1 CDS RMA_0196 NC_009900.1 199193 201331 R hypothetical protein complement(199193..201331) Rickettsia massiliae MTU5 5665052 YP_001499038.1 CDS RMA_0197 NC_009900.1 201701 202450 R integral membrane protein complement(201701..202450) Rickettsia massiliae MTU5 5665970 YP_001499039.1 CDS dapB NC_009900.1 202485 203342 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(202485..203342) Rickettsia massiliae MTU5 5665971 YP_001499040.1 CDS RMA_0199 NC_009900.1 203467 203946 R flavoprotein oxygenase DIM6/NTAB family protein complement(203467..203946) Rickettsia massiliae MTU5 5665972 YP_001499041.1 CDS yqiX NC_009900.1 203931 204662 R amino acid ABC transporter substrate-binding protein complement(203931..204662) Rickettsia massiliae MTU5 5665480 YP_001499042.1 CDS gatB NC_009900.1 204832 206319 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(204832..206319) Rickettsia massiliae MTU5 5665481 YP_001499043.1 CDS gatA NC_009900.1 206319 207806 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(206319..207806) Rickettsia massiliae MTU5 5666092 YP_001499044.1 CDS gatC NC_009900.1 207803 208141 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(207803..208141) Rickettsia massiliae MTU5 5666093 YP_001499045.1 CDS frr NC_009900.1 208908 209474 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(208908..209474) Rickettsia massiliae MTU5 5666094 YP_001499046.1 CDS pyrH NC_009900.1 209761 210513 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(209761..210513) Rickettsia massiliae MTU5 5665918 YP_001499047.1 CDS mnhE NC_009900.1 210498 210827 R subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit E complement(210498..210827) Rickettsia massiliae MTU5 5665919 YP_001499048.1 CDS emrB NC_009900.1 210805 212379 R MFS-type multidrug resistance protein B complement(210805..212379) Rickettsia massiliae MTU5 5665920 YP_001499049.1 CDS RMA_0208 NC_009900.1 212589 212798 D hypothetical protein 212589..212798 Rickettsia massiliae MTU5 5665583 YP_001499050.1 CDS RMA_0209 NC_009900.1 213426 214016 R hypothetical protein complement(213426..214016) Rickettsia massiliae MTU5 5665584 YP_001499051.1 CDS omp1 NC_009900.1 214746 217052 R Outer membrane protein omp1 complement(214746..217052) Rickettsia massiliae MTU5 5666148 YP_001499052.1 CDS RMA_0211 NC_009900.1 217291 218370 R putative membrane-associated zinc metalloprotease complement(217291..218370) Rickettsia massiliae MTU5 5665449 YP_001499053.1 CDS nusB NC_009900.1 218650 219120 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 218650..219120 Rickettsia massiliae MTU5 5665450 YP_001499054.1 CDS rrmJ NC_009900.1 219124 219942 D ribosomal RNA large subunit methyltransferase J 219124..219942 Rickettsia massiliae MTU5 5665738 YP_001499055.1 CDS RMA_0214 NC_009900.1 220005 221102 R hypothetical protein complement(220005..221102) Rickettsia massiliae MTU5 5665739 YP_001499056.1 CDS RMA_0215 NC_009900.1 221253 222206 D hypothetical protein 221253..222206 Rickettsia massiliae MTU5 5665740 YP_001499057.1 CDS RMA_0216 NC_009900.1 222265 222705 R oligoketide cyclase/lipid transport protein complement(222265..222705) Rickettsia massiliae MTU5 5665056 YP_001499058.1 CDS RMA_0217 NC_009900.1 222705 223025 R hypothetical protein complement(222705..223025) Rickettsia massiliae MTU5 5665057 YP_001499059.2 CDS RMA_0218 NC_009900.1 222999 223730 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 222999..223730 Rickettsia massiliae MTU5 5665126 YP_001499060.1 CDS RMA_0219 NC_009900.1 223816 224052 R hypothetical protein complement(223816..224052) Rickettsia massiliae MTU5 5665127 YP_001499061.1 CDS acrF NC_009900.1 224305 227364 R hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(224305..227364) Rickettsia massiliae MTU5 5665128 YP_001499062.1 CDS hupA NC_009900.1 227724 228143 D DNA-binding protein HU 227724..228143 Rickettsia massiliae MTU5 5666194 YP_001499063.1 CDS holB NC_009900.1 228280 229092 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 228280..229092 Rickettsia massiliae MTU5 5666195 YP_001499064.1 CDS ffh NC_009900.1 229297 230655 D Signal recognition particle protein 229297..230655 Rickettsia massiliae MTU5 5666196 YP_001499065.1 CDS hemN NC_009900.1 233432 234598 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 233432..234598 Rickettsia massiliae MTU5 5665072 YP_001499066.1 CDS gltP NC_009900.1 237186 238388 R Na+/H+-dicarboxylate symporter complement(237186..238388) Rickettsia massiliae MTU5 5665294 YP_001499067.1 CDS cutA NC_009900.1 238426 238740 R divalent cation tolerance protein complement(238426..238740) Rickettsia massiliae MTU5 5665295 YP_001499068.1 CDS RMA_0237 NC_009900.1 238743 239165 R putative 6-pyruvoyl tetrahydropterin synthase complement(238743..239165) Rickettsia massiliae MTU5 5666107 YP_001499069.1 CDS sucB NC_009900.1 239328 240533 R component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase complement(239328..240533) Rickettsia massiliae MTU5 5666108 YP_001499070.1 CDS sucA NC_009900.1 240695 243481 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(240695..243481) Rickettsia massiliae MTU5 5666109 YP_001499071.1 CDS recN NC_009900.1 244574 246223 R DNA repair protein RecN complement(244574..246223) Rickettsia massiliae MTU5 5665182 YP_001499072.1 CDS comL NC_009900.1 246219 246974 R DNA uptake lipoprotein complement(246219..246974) Rickettsia massiliae MTU5 5665183 YP_001499073.1 CDS dnaJ NC_009900.1 247546 248670 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(247546..248670) Rickettsia massiliae MTU5 5664867 YP_001499074.1 CDS dnaK NC_009900.1 248797 250797 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(248797..250797) Rickettsia massiliae MTU5 5664868 YP_001499075.1 CDS RMA_0247 NC_009900.1 250743 252236 D heat shock protease 250743..252236 Rickettsia massiliae MTU5 5664869 YP_001499076.1 CDS RMA_0250 NC_009900.1 254866 255243 R hypothetical protein complement(254866..255243) Rickettsia massiliae MTU5 5666134 YP_001499077.1 CDS RMA_0251 NC_009900.1 255413 255895 D hypothetical protein 255413..255895 Rickettsia massiliae MTU5 5666135 YP_001499078.1 CDS holA NC_009900.1 255903 256877 D required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 255903..256877 Rickettsia massiliae MTU5 5666136 YP_001499079.1 CDS coq7 NC_009900.1 256983 257549 D ubiquinone biosynthesis protein coq7 256983..257549 Rickettsia massiliae MTU5 5665375 YP_001499080.1 CDS coxC NC_009900.1 258176 259027 D cytochrome c oxidase subunit III 258176..259027 Rickettsia massiliae MTU5 5665376 YP_001499081.1 CDS virB2 NC_009900.1 259135 259545 D VirB2-like protein 259135..259545 Rickettsia massiliae MTU5 5665377 YP_001499082.1 CDS RMA_0256 NC_009900.1 259979 260611 R hypothetical protein complement(259979..260611) Rickettsia massiliae MTU5 5665538 YP_001499083.1 CDS dapD NC_009900.1 260663 261511 D catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 260663..261511 Rickettsia massiliae MTU5 5665539 YP_001499084.1 CDS pbpC NC_009900.1 263634 266051 R bifunctional penicillin-binding protein 1C complement(263634..266051) Rickettsia massiliae MTU5 5665187 YP_001499085.1 CDS uspA NC_009900.1 271262 271708 R similar to related nucleotide-binding proteins; universal stress protein UspA complement(271262..271708) Rickettsia massiliae MTU5 5665591 YP_001499086.1 CDS imp NC_009900.1 271718 272710 R TRAP-type transport system, periplasmic protein complement(271718..272710) Rickettsia massiliae MTU5 5665592 YP_001499087.1 CDS RMA_0268 NC_009900.1 272664 273728 R hypothetical protein complement(272664..273728) Rickettsia massiliae MTU5 5665593 YP_001499088.1 CDS fdxB NC_009900.1 273732 274079 R ferredoxin complement(273732..274079) Rickettsia massiliae MTU5 5666061 YP_001499089.1 CDS hscA NC_009900.1 274141 275931 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(274141..275931) Rickettsia massiliae MTU5 5666062 YP_001499090.1 CDS hscB NC_009900.1 275919 276419 R J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB complement(275919..276419) Rickettsia massiliae MTU5 5666063 YP_001499091.1 CDS rnhB NC_009900.1 276478 277062 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 276478..277062 Rickettsia massiliae MTU5 5665170 YP_001499092.1 CDS uvrB NC_009900.1 277221 279206 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(277221..279206) Rickettsia massiliae MTU5 5665171 YP_001499093.1 CDS grxC1 NC_009900.1 279276 279587 D GrxC family glutaredoxin 279276..279587 Rickettsia massiliae MTU5 5665100 YP_001499094.1 CDS atm1 NC_009900.1 279732 281522 D multidrug resistance protein Atm1 279732..281522 Rickettsia massiliae MTU5 5665101 YP_001499095.1 CDS gyrA NC_009900.1 281875 284595 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 281875..284595 Rickettsia massiliae MTU5 5665102 YP_001499096.1 CDS RMA_0278 NC_009900.1 286635 286823 D hypothetical protein 286635..286823 Rickettsia massiliae MTU5 5665691 YP_001499097.1 CDS def NC_009900.1 287270 287800 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 287270..287800 Rickettsia massiliae MTU5 5665692 YP_001499098.1 CDS fmt NC_009900.1 287797 288705 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 287797..288705 Rickettsia massiliae MTU5 5665765 YP_001499099.1 CDS n2B NC_009900.1 293862 294923 R putative ATPase n2B complement(293862..294923) Rickettsia massiliae MTU5 5666169 YP_001499100.1 CDS RMA_0292 NC_009900.1 296560 296859 D ankyrin repeat-containing protein 296560..296859 Rickettsia massiliae MTU5 5666069 YP_001499101.1 CDS RMA_0293 NC_009900.1 297022 297291 D hypothetical protein 297022..297291 Rickettsia massiliae MTU5 5666020 YP_001499102.1 CDS abcT3 NC_009900.1 297576 299399 R multidrug ABC transporter ATP-binding protein complement(297576..299399) Rickettsia massiliae MTU5 5666021 YP_001499103.1 CDS RMA_0295 NC_009900.1 299507 299800 D hypothetical protein 299507..299800 Rickettsia massiliae MTU5 5666022 YP_001499104.1 CDS cydA NC_009900.1 299952 301322 D cytochrome d ubiquinol oxidase subunit I 299952..301322 Rickettsia massiliae MTU5 5666084 YP_001499105.1 CDS cydB NC_009900.1 301330 302349 D cytochrome d ubiquinol oxidase subunit II 301330..302349 Rickettsia massiliae MTU5 5666085 YP_001499106.1 CDS RMA_0298 NC_009900.1 302479 302793 D antitoxin of toxin-antitoxin (TA) system StbD 302479..302793 Rickettsia massiliae MTU5 5665612 YP_001499107.1 CDS RMA_0299 NC_009900.1 302804 303064 D putative toxin of toxin-antitoxin (TA) system StbD 302804..303064 Rickettsia massiliae MTU5 5665613 YP_001499108.1 CDS lgtF NC_009900.1 303048 303905 D Beta 1,4 glucosyltransferase 303048..303905 Rickettsia massiliae MTU5 5665614 YP_001499109.1 CDS mpp NC_009900.1 303907 305220 D protease 303907..305220 Rickettsia massiliae MTU5 5665275 YP_001499110.1 CDS purC NC_009900.1 305374 306084 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 305374..306084 Rickettsia massiliae MTU5 5665276 YP_001499111.1 CDS RMA_0303 NC_009900.1 306306 307901 D hypothetical protein 306306..307901 Rickettsia massiliae MTU5 5665277 YP_001499112.1 CDS thrS NC_009900.1 307952 309907 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 307952..309907 Rickettsia massiliae MTU5 5665599 YP_001499113.1 CDS RMA_0307 NC_009900.1 312622 313197 D ABC transporter ATPase 312622..313197 Rickettsia massiliae MTU5 5665877 YP_001499114.1 CDS RMA_0308 NC_009900.1 314386 314988 R hypothetical protein complement(314386..314988) Rickettsia massiliae MTU5 5665878 YP_001499115.1 CDS tolC NC_009900.1 316202 317563 D Type I secretion outer membrane protein TolC 316202..317563 Rickettsia massiliae MTU5 5665308 YP_001499116.1 CDS RMA_0313 NC_009900.1 317565 317951 D hypothetical protein 317565..317951 Rickettsia massiliae MTU5 5665309 YP_001499117.1 CDS RMA_0314 NC_009900.1 318146 319891 D ankyrin repeat-containing protein 318146..319891 Rickettsia massiliae MTU5 5664920 YP_001499118.1 CDS parE NC_009900.1 320101 322089 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 320101..322089 Rickettsia massiliae MTU5 5664921 YP_001499119.1 CDS ctp NC_009900.1 322089 323567 D carboxyl-terminal protease 322089..323567 Rickettsia massiliae MTU5 5664922 YP_001499120.1 CDS barA NC_009900.1 323779 325275 D histidine kinase sensor protein 323779..325275 Rickettsia massiliae MTU5 5665814 YP_001499121.1 CDS RMA_0318 NC_009900.1 325326 326078 D hypothetical protein 325326..326078 Rickettsia massiliae MTU5 5665815 YP_001499122.1 CDS RMA_0319 NC_009900.1 326091 326756 D hypothetical protein 326091..326756 Rickettsia massiliae MTU5 5665816 YP_001499123.1 CDS RMA_0320 NC_009900.1 326746 328020 D WD-40 repeat-containing protein 326746..328020 Rickettsia massiliae MTU5 5665904 YP_001499124.1 CDS rplM NC_009900.1 328110 328580 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 328110..328580 Rickettsia massiliae MTU5 5665905 YP_001499125.1 CDS rpsI NC_009900.1 328587 329066 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 328587..329066 Rickettsia massiliae MTU5 5665851 YP_001499126.1 CDS RMA_0323 NC_009900.1 329903 330346 D transposase 329903..330346 Rickettsia massiliae MTU5 5665195 YP_001499127.1 CDS RMA_0325 NC_009900.1 331134 331445 D putative pterin-4-alpha-carbinolamine dehydratase 331134..331445 Rickettsia massiliae MTU5 5664864 YP_001499128.1 CDS RMA_0326 NC_009900.1 331914 332243 D hypothetical protein 331914..332243 Rickettsia massiliae MTU5 5664865 YP_001499129.1 CDS nudH NC_009900.1 332504 332992 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(332504..332992) Rickettsia massiliae MTU5 5664866 YP_001499130.1 CDS pleD NC_009900.1 333014 334384 R involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; response regulator PleD complement(333014..334384) Rickettsia massiliae MTU5 5665957 YP_001499131.1 CDS efp NC_009900.1 334460 335026 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 334460..335026 Rickettsia massiliae MTU5 5665958 YP_001499132.1 CDS suhB NC_009900.1 335292 336038 D extragenic suppressor protein suhB 335292..336038 Rickettsia massiliae MTU5 5664969 YP_001499133.1 CDS RMA_0331 NC_009900.1 336098 336433 D hypothetical protein 336098..336433 Rickettsia massiliae MTU5 5664970 YP_001499134.1 CDS psd NC_009900.1 336440 337162 D catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 336440..337162 Rickettsia massiliae MTU5 5664971 YP_001499135.1 CDS pssA NC_009900.1 337311 338078 D CDP-diacylglycerol--serine O-phosphatidyltransferase 337311..338078 Rickettsia massiliae MTU5 5664917 YP_001499136.1 CDS emrA NC_009900.1 338072 339139 D multidrug resistance protein A 338072..339139 Rickettsia massiliae MTU5 5664918 YP_001499137.1 CDS RMA_0335 NC_009900.1 339464 339976 D hypothetical protein 339464..339976 Rickettsia massiliae MTU5 5664919 YP_001499138.1 CDS RMA_0336 NC_009900.1 340105 340323 R hypothetical protein complement(340105..340323) Rickettsia massiliae MTU5 5665519 YP_001499139.1 CDS bolA1 NC_009900.1 340305 340547 R BolA-like protein complement(340305..340547) Rickettsia massiliae MTU5 5665520 YP_001499140.1 CDS RMA_0338 NC_009900.1 340602 341825 D EAL domain-containing protein 340602..341825 Rickettsia massiliae MTU5 5665854 YP_001499141.1 CDS murC NC_009900.1 342046 343503 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 342046..343503 Rickettsia massiliae MTU5 5665855 YP_001499142.1 CDS murB NC_009900.1 343513 344490 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 343513..344490 Rickettsia massiliae MTU5 5665856 YP_001499143.1 CDS ddl NC_009900.1 344733 345698 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 344733..345698 Rickettsia massiliae MTU5 5665609 YP_001499144.1 CDS ftsQ NC_009900.1 345692 346498 D cell division protein ftsQ 345692..346498 Rickettsia massiliae MTU5 5665610 YP_001499145.1 CDS ftsA NC_009900.1 346627 347862 D cell division protein ftsA 346627..347862 Rickettsia massiliae MTU5 5665611 YP_001499146.1 CDS RMA_0344 NC_009900.1 348008 348484 R membrane protease regulatory membrane protein complement(348008..348484) Rickettsia massiliae MTU5 5665016 YP_001499147.1 CDS cycM NC_009900.1 348468 348995 R cytochrome c complement(348468..348995) Rickettsia massiliae MTU5 5665017 YP_001499148.1 CDS RMA_0346 NC_009900.1 349104 350180 D hypothetical protein 349104..350180 Rickettsia massiliae MTU5 5665106 YP_001499149.1 CDS lpxC NC_009900.1 350189 351091 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(350189..351091) Rickettsia massiliae MTU5 5665107 YP_001499150.1 CDS RMA_0348 NC_009900.1 351439 352587 R hypothetical protein complement(351439..352587) Rickettsia massiliae MTU5 5665108 YP_001499151.1 CDS rne NC_009900.1 353015 355087 D ribonuclease E 353015..355087 Rickettsia massiliae MTU5 5665888 YP_001499152.1 CDS coxW NC_009900.1 355330 356349 D cytochrome c oxidase assembly protein 355330..356349 Rickettsia massiliae MTU5 5665889 YP_001499153.1 CDS rluA1 NC_009900.1 356353 357273 D ribosomal large subunit pseudouridine synthase 356353..357273 Rickettsia massiliae MTU5 5665890 YP_001499154.1 CDS pbpE NC_009900.1 357380 358609 D penicillin-binding protein 4* 357380..358609 Rickettsia massiliae MTU5 5665997 YP_001499155.1 CDS xth1 NC_009900.1 358691 359569 D exodeoxyribonuclease III 358691..359569 Rickettsia massiliae MTU5 5665998 YP_001499156.1 CDS pdhA NC_009900.1 359592 360572 D pyruvate dehydrogenase e1 component subunit alpha 359592..360572 Rickettsia massiliae MTU5 5666075 YP_001499157.1 CDS pdhB NC_009900.1 360733 361713 D catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acyltransferase within the complex. The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2); it contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase; pyruvate dehydrogenase subunit beta 360733..361713 Rickettsia massiliae MTU5 5666076 YP_001499158.1 CDS typA NC_009900.1 361851 363680 R GTP-binding protein TypA complement(361851..363680) Rickettsia massiliae MTU5 5666077 YP_001499159.1 CDS hlpA NC_009900.1 364838 365392 D Outer membrane protein 364838..365392 Rickettsia massiliae MTU5 5665744 YP_001499160.1 CDS icd NC_009900.1 365467 366918 D catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 365467..366918 Rickettsia massiliae MTU5 5665745 YP_001499161.1 CDS RMA_0359 NC_009900.1 367024 367353 D subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit G 367024..367353 Rickettsia massiliae MTU5 5665746 YP_001499162.1 CDS mnhB NC_009900.1 367399 368490 D subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit B 367399..368490 Rickettsia massiliae MTU5 5666199 YP_001499163.1 CDS ccmB NC_009900.1 368477 369130 D Heme exporter protein B 368477..369130 Rickettsia massiliae MTU5 5666200 YP_001499164.1 CDS RMA_0362 NC_009900.1 369207 369665 D hypothetical protein 369207..369665 Rickettsia massiliae MTU5 5666186 YP_001499165.1 CDS petA NC_009900.1 369687 370214 D ubiquinol-cytochrome c reductase, iron-sulfur subunit 369687..370214 Rickettsia massiliae MTU5 5666187 YP_001499166.1 CDS petB NC_009900.1 370165 371418 D cytochrome b 370165..371418 Rickettsia massiliae MTU5 5666188 YP_001499167.1 CDS RMA_0365 NC_009900.1 371536 371817 D endo/excinuclease amino terminal domain-containing protein 371536..371817 Rickettsia massiliae MTU5 5666271 YP_001499168.1 CDS fbcH NC_009900.1 371889 372698 D cytochrome c1, heme protein 371889..372698 Rickettsia massiliae MTU5 5666272 YP_001499169.1 CDS RMA_0367 NC_009900.1 372989 373420 D hypothetical protein 372989..373420 Rickettsia massiliae MTU5 5666273 YP_001499170.1 CDS hspC1 NC_009900.1 373441 373983 D small heat shock protein 373441..373983 Rickettsia massiliae MTU5 5666268 YP_001499171.1 CDS RMA_0369 NC_009900.1 374250 374924 R hypothetical protein complement(374250..374924) Rickettsia massiliae MTU5 5666269 YP_001499172.1 CDS prfB NC_009900.1 375978 376991 R recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 complement(375978..376991) Rickettsia massiliae MTU5 5666263 YP_001499173.1 CDS lepA NC_009900.1 377240 379054 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 377240..379054 Rickettsia massiliae MTU5 5666264 YP_001499174.1 CDS RMA_0377 NC_009900.1 383223 383516 D hypothetical protein 383223..383516 Rickettsia massiliae MTU5 5666248 YP_001499175.1 CDS RMA_0382 NC_009900.1 386546 386869 D hypothetical protein 386546..386869 Rickettsia massiliae MTU5 5666244 YP_001499176.1 CDS rodA NC_009900.1 389031 390149 R rod shape-determining protein RodA complement(389031..390149) Rickettsia massiliae MTU5 5666221 YP_001499177.1 CDS ptrB NC_009900.1 390350 392548 R protease II complement(390350..392548) Rickettsia massiliae MTU5 5666222 YP_001499178.1 CDS nuoL3 NC_009900.1 392724 394268 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D complement(392724..394268) Rickettsia massiliae MTU5 5665906 YP_001499179.1 CDS vapC1 NC_009900.1 394264 394626 R toxin of toxin-antitoxin (TA) system VapC complement(394264..394626) Rickettsia massiliae MTU5 5665907 YP_001499180.1 CDS vapB1 NC_009900.1 394678 394980 R antitoxin of toxin-antitoxin (TA) system VapB complement(394678..394980) Rickettsia massiliae MTU5 5665908 YP_001499181.1 CDS nuoL2 NC_009900.1 395135 396658 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D complement(395135..396658) Rickettsia massiliae MTU5 5666008 YP_001499182.1 CDS nuoN2 NC_009900.1 396742 398043 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D complement(396742..398043) Rickettsia massiliae MTU5 5666009 YP_001499183.1 CDS mnhC NC_009900.1 398040 398381 R subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C complement(398040..398381) Rickettsia massiliae MTU5 5666010 YP_001499184.1 CDS virB9-1 NC_009900.1 398473 399243 R VirB9 complement(398473..399243) Rickettsia massiliae MTU5 5665830 YP_001499185.1 CDS virB8-1 NC_009900.1 399227 399952 R virulence protein complement(399227..399952) Rickettsia massiliae MTU5 5665831 YP_001499186.1 CDS RMA_0397 NC_009900.1 400381 400569 D hypothetical protein 400381..400569 Rickettsia massiliae MTU5 5665832 YP_001499187.1 CDS virB8-2 NC_009900.1 400622 401353 D virulence protein 400622..401353 Rickettsia massiliae MTU5 5666070 YP_001499188.1 CDS virB9-2 NC_009900.1 401340 401813 D VirB9 401340..401813 Rickettsia massiliae MTU5 5666071 YP_001499189.1 CDS virB10 NC_009900.1 401997 403439 D VirB10 401997..403439 Rickettsia massiliae MTU5 5666072 YP_001499190.1 CDS virB11 NC_009900.1 403397 404440 D type IV secretion system ATPase VirB11 403397..404440 Rickettsia massiliae MTU5 5665915 YP_001499191.1 CDS virD4 NC_009900.1 404607 406382 D type IV secretion system protein VirB8 404607..406382 Rickettsia massiliae MTU5 5665916 YP_001499192.1 CDS gppA NC_009900.1 406392 407804 D guanosine pentaphosphate phosphohydrolase 406392..407804 Rickettsia massiliae MTU5 5665917 YP_001499193.1 CDS RMA_0404 NC_009900.1 408046 408861 R hypothetical protein complement(408046..408861) Rickettsia massiliae MTU5 5666050 YP_001499194.1 CDS RMA_0407 NC_009900.1 410787 411671 D hypothetical protein 410787..411671 Rickettsia massiliae MTU5 5665208 YP_001499195.1 CDS RMA_0408 NC_009900.1 411628 412479 D hypothetical protein 411628..412479 Rickettsia massiliae MTU5 5665209 YP_001499196.1 CDS cysQ NC_009900.1 412476 413258 D 3'(2'),5'-bisphosphate nucleotidase 412476..413258 Rickettsia massiliae MTU5 5665210 YP_001499197.1 CDS mutS NC_009900.1 413398 416073 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(413398..416073) Rickettsia massiliae MTU5 5665571 YP_001499198.1 CDS lacA NC_009900.1 416244 416693 R catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B complement(416244..416693) Rickettsia massiliae MTU5 5665572 YP_001499199.1 CDS nlpD1 NC_009900.1 416730 417404 D membrane-bound metallopeptidase 416730..417404 Rickettsia massiliae MTU5 5665573 YP_001499200.1 CDS thyX NC_009900.1 418295 419188 D flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 418295..419188 Rickettsia massiliae MTU5 5665166 YP_001499201.1 CDS tolB NC_009900.1 419263 420597 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 419263..420597 Rickettsia massiliae MTU5 5666058 YP_001499202.1 CDS rpoH NC_009900.1 420752 421684 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(420752..421684) Rickettsia massiliae MTU5 5666059 YP_001499203.1 CDS cox11 NC_009900.1 421719 422288 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 421719..422288 Rickettsia massiliae MTU5 5666060 YP_001499204.1 CDS RMA_0419 NC_009900.1 422504 423388 R hypothetical protein complement(422504..423388) Rickettsia massiliae MTU5 5665118 YP_001499205.1 CDS mnmA NC_009900.1 423627 424751 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 423627..424751 Rickettsia massiliae MTU5 5665119 YP_001499206.1 CDS atrC1 NC_009900.1 424877 426277 D cationic amino acid transporter-1 424877..426277 Rickettsia massiliae MTU5 5665120 YP_001499207.1 CDS hisS NC_009900.1 426346 427671 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 426346..427671 Rickettsia massiliae MTU5 5665462 YP_001499208.1 CDS RMA_0429 NC_009900.1 431061 431510 R hypothetical protein complement(431061..431510) Rickettsia massiliae MTU5 5666123 YP_001499209.1 CDS tolQ NC_009900.1 433910 434644 D hypothetical protein 433910..434644 Rickettsia massiliae MTU5 5664968 YP_001499210.1 CDS tolR NC_009900.1 434644 435075 D hypothetical protein 434644..435075 Rickettsia massiliae MTU5 5665202 YP_001499211.1 CDS RMA_0434 NC_009900.1 435053 436039 D links inner and outer membranes; periplasmic protein TonB 435053..436039 Rickettsia massiliae MTU5 5665203 YP_001499212.1 CDS spoT2 NC_009900.1 437045 437752 D guanosine polyphosphate pyrophosphohydrolase/synthetase 437045..437752 Rickettsia massiliae MTU5 5665204 YP_001499213.1 CDS proP2 NC_009900.1 437703 439034 R proline/betaine transporter complement(437703..439034) Rickettsia massiliae MTU5 5665002 YP_001499214.1 CDS RMA_0437 NC_009900.1 439168 440706 R HlyD family secretion protein complement(439168..440706) Rickettsia massiliae MTU5 5665003 YP_001499215.1 CDS aprD NC_009900.1 440888 442669 R alkaline protease secretion ATP-binding protein AprD complement(440888..442669) Rickettsia massiliae MTU5 5665004 YP_001499216.1 CDS asd NC_009900.1 442656 443675 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(442656..443675) Rickettsia massiliae MTU5 5665560 YP_001499217.1 CDS pkcI NC_009900.1 443665 444063 R protein kinase C inhibitor 1 complement(443665..444063) Rickettsia massiliae MTU5 5665561 YP_001499218.1 CDS RMA_0441 NC_009900.1 444196 444576 R hypothetical protein complement(444196..444576) Rickettsia massiliae MTU5 5665562 YP_001499219.1 CDS hslV NC_009900.1 444803 445375 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 444803..445375 Rickettsia massiliae MTU5 5664856 YP_001499220.1 CDS hslU NC_009900.1 445372 446724 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 445372..446724 Rickettsia massiliae MTU5 5664857 YP_001499221.1 CDS RMA_0449 NC_009900.1 449075 449518 D transposase 449075..449518 Rickettsia massiliae MTU5 5665300 YP_001499222.1 CDS lpxB NC_009900.1 450072 451412 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 450072..451412 Rickettsia massiliae MTU5 5665763 YP_001499223.1 CDS RMA_0453 NC_009900.1 451409 451684 R hypothetical protein complement(451409..451684) Rickettsia massiliae MTU5 5665764 YP_001499224.1 CDS RMA_0454 NC_009900.1 452008 453060 D aminodeoxychorismate lyase 452008..453060 Rickettsia massiliae MTU5 5666038 YP_001499225.1 CDS cyaY NC_009900.1 453176 453514 D defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 453176..453514 Rickettsia massiliae MTU5 5666039 YP_001499226.1 CDS RMA_0456 NC_009900.1 453652 454323 D hypothetical protein 453652..454323 Rickettsia massiliae MTU5 5666040 YP_001499227.1 CDS RMA_0457 NC_009900.1 454611 455288 D hypothetical protein 454611..455288 Rickettsia massiliae MTU5 5665747 YP_001499228.1 CDS RMA_0459 NC_009900.1 455924 456367 D transposase 455924..456367 Rickettsia massiliae MTU5 5665749 YP_001499229.1 CDS RMA_0461 NC_009900.1 457153 457536 D hypothetical protein 457153..457536 Rickettsia massiliae MTU5 5665153 YP_001499230.1 CDS gltX NC_009900.1 457619 458962 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(457619..458962) Rickettsia massiliae MTU5 5665154 YP_001499231.1 CDS topA NC_009900.1 459071 461401 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(459071..461401) Rickettsia massiliae MTU5 5665475 YP_001499232.1 CDS tdpX1 NC_009900.1 462695 463303 R thioredoxin peroxidase 1 complement(462695..463303) Rickettsia massiliae MTU5 5665510 YP_001499233.1 CDS hflC1 NC_009900.1 463379 464317 R membrane protease subunit stomatin/prohibitin-like protein complement(463379..464317) Rickettsia massiliae MTU5 5665296 YP_001499234.1 CDS RMA_0470 NC_009900.1 464687 466255 R putative membrane-associated metal-dependent hydrolase complement(464687..466255) Rickettsia massiliae MTU5 5665297 YP_001499235.1 CDS RMA_0471 NC_009900.1 466258 466755 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 466258..466755 Rickettsia massiliae MTU5 5665298 YP_001499236.1 CDS RMA_0472 NC_009900.1 466911 467273 D plasmid maintenance system antidote protein 466911..467273 Rickettsia massiliae MTU5 5664884 YP_001499237.1 CDS RMA_0473 NC_009900.1 467359 468225 D dTDP-4-dehydrorhamnose reductase 467359..468225 Rickettsia massiliae MTU5 5664885 YP_001499238.1 CDS capD NC_009900.1 468420 469448 D putative nucleoside-diphosphate sugar epimerase CapD 468420..469448 Rickettsia massiliae MTU5 5664886 YP_001499239.1 CDS rffE NC_009900.1 469441 470574 D UDP-N-acetylglucosamine 2-epimerase 469441..470574 Rickettsia massiliae MTU5 5664938 YP_001499240.1 CDS RMA_0476 NC_009900.1 470534 471880 D hypothetical protein 470534..471880 Rickettsia massiliae MTU5 5664939 YP_001499241.1 CDS RMA_0477 NC_009900.1 471896 472279 D hypothetical protein 471896..472279 Rickettsia massiliae MTU5 5664940 YP_001499242.1 CDS RMA_0478 NC_009900.1 472695 474545 D glycosyltransferase 472695..474545 Rickettsia massiliae MTU5 5665290 YP_001499243.1 CDS RMA_0479 NC_009900.1 474550 475548 R RND family efflux transporter MFP subunit complement(474550..475548) Rickettsia massiliae MTU5 5665291 YP_001499244.1 CDS RMA_0480 NC_009900.1 475637 476437 R hypothetical protein complement(475637..476437) Rickettsia massiliae MTU5 5665292 YP_001499245.1 CDS RMA_0481 NC_009900.1 476441 477208 R putative hydrolase/acyltransferase complement(476441..477208) Rickettsia massiliae MTU5 5665345 YP_001499246.1 CDS RMA_0482 NC_009900.1 477241 478413 D glycosyltransferase 477241..478413 Rickettsia massiliae MTU5 5665346 YP_001499247.1 CDS RMA_0483 NC_009900.1 478937 479530 R ATPase components of ABC transporters complement(478937..479530) Rickettsia massiliae MTU5 5665347 YP_001499248.1 CDS rpsD NC_009900.1 480964 481647 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(480964..481647) Rickettsia massiliae MTU5 5665018 YP_001499249.1 CDS cyoB NC_009900.1 481690 482616 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 481690..482616 Rickettsia massiliae MTU5 5665019 YP_001499250.1 CDS RMA_0487 NC_009900.1 483780 484163 D hypothetical protein 483780..484163 Rickettsia massiliae MTU5 5665263 YP_001499251.1 CDS asmA NC_009900.1 485011 487536 R Outer membrane assembly protein complement(485011..487536) Rickettsia massiliae MTU5 5665264 YP_001499252.1 CDS rimM NC_009900.1 487858 488355 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(487858..488355) Rickettsia massiliae MTU5 5665265 YP_001499253.1 CDS RMA_0490 NC_009900.1 488370 491048 D hypothetical protein 488370..491048 Rickettsia massiliae MTU5 5665670 YP_001499254.1 CDS xseB NC_009900.1 491062 491304 D catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 491062..491304 Rickettsia massiliae MTU5 5665671 YP_001499255.1 CDS mpg NC_009900.1 492662 493225 R responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase complement(492662..493225) Rickettsia massiliae MTU5 5665547 YP_001499256.1 CDS RMA_0498 NC_009900.1 493497 493745 R hypothetical protein complement(493497..493745) Rickettsia massiliae MTU5 5665789 YP_001499257.1 CDS nuoE NC_009900.1 493738 494241 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(493738..494241) Rickettsia massiliae MTU5 5665790 YP_001499258.1 CDS nuoD NC_009900.1 494661 495929 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(494661..495929) Rickettsia massiliae MTU5 5665732 YP_001499259.1 CDS nuoC NC_009900.1 495935 496663 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C complement(495935..496663) Rickettsia massiliae MTU5 5665733 YP_001499260.1 CDS nuoB NC_009900.1 496641 497165 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(496641..497165) Rickettsia massiliae MTU5 5665734 YP_001499261.1 CDS nuoA NC_009900.1 497170 497703 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A complement(497170..497703) Rickettsia massiliae MTU5 5666137 YP_001499262.1 CDS rfaL NC_009900.1 497700 498938 R putative lipid A core - O-antigen ligase complement(497700..498938) Rickettsia massiliae MTU5 5666138 YP_001499263.1 CDS RMA_0506 NC_009900.1 498939 499427 R hypothetical protein complement(498939..499427) Rickettsia massiliae MTU5 5666280 YP_001499264.1 CDS xerD NC_009900.1 501218 502138 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 501218..502138 Rickettsia massiliae MTU5 5665270 YP_001499265.1 CDS RMA_0510 NC_009900.1 502214 503230 D hypothetical protein 502214..503230 Rickettsia massiliae MTU5 5665446 YP_001499266.1 CDS RMA_0511 NC_009900.1 503341 504519 D hypothetical protein 503341..504519 Rickettsia massiliae MTU5 5665447 YP_001499267.1 CDS fabI NC_009900.1 504708 505490 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase complement(504708..505490) Rickettsia massiliae MTU5 5666208 YP_001499268.1 CDS lnt NC_009900.1 505560 507083 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 505560..507083 Rickettsia massiliae MTU5 5666209 YP_001499269.1 CDS ampD1 NC_009900.1 507756 508577 D negative regulator of beta-lactamase expression 507756..508577 Rickettsia massiliae MTU5 5666260 YP_001499270.1 CDS dsbB NC_009900.1 512714 513256 R disulfide bond formation protein DsbB complement(512714..513256) Rickettsia massiliae MTU5 5665730 YP_001499271.1 CDS lysK NC_009900.1 513413 514981 D class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase 513413..514981 Rickettsia massiliae MTU5 5665731 YP_001499272.1 CDS RMA_0526 NC_009900.1 515111 516043 D putative permease 515111..516043 Rickettsia massiliae MTU5 5665254 YP_001499273.1 CDS tme NC_009900.1 516095 518485 D NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 516095..518485 Rickettsia massiliae MTU5 5665255 YP_001499274.1 CDS RMA_0530 NC_009900.1 519598 520011 R hypothetical protein complement(519598..520011) Rickettsia massiliae MTU5 5665625 YP_001499275.1 CDS RMA_0531 NC_009900.1 519977 520264 R AbrB family transcriptional regulator complement(519977..520264) Rickettsia massiliae MTU5 5665348 YP_001499276.1 CDS proP3 NC_009900.1 520419 521675 D proline/betaine transporter 520419..521675 Rickettsia massiliae MTU5 5665349 YP_001499277.1 CDS mdh NC_009900.1 524392 525354 R Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase complement(524392..525354) Rickettsia massiliae MTU5 5665367 YP_001499278.1 CDS RMA_0537 NC_009900.1 525562 525960 D transposase 525562..525960 Rickettsia massiliae MTU5 5665324 YP_001499279.1 CDS RMA_0538 NC_009900.1 525986 527107 R transposase complement(525986..527107) Rickettsia massiliae MTU5 5665325 YP_001499280.1 CDS tlc2 NC_009900.1 528523 530049 R ATP/ADP translocase complement(528523..530049) Rickettsia massiliae MTU5 5664914 YP_001499281.1 CDS pyrG NC_009900.1 530258 531877 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(530258..531877) Rickettsia massiliae MTU5 5664915 YP_001499282.1 CDS kdsB NC_009900.1 531874 532614 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(531874..532614) Rickettsia massiliae MTU5 5664916 YP_001499283.1 CDS mutT NC_009900.1 533372 533683 R ADP-ribose pyrophosphatase MutT complement(533372..533683) Rickettsia massiliae MTU5 5664998 YP_001499284.1 CDS RMA_0544 NC_009900.1 533817 535403 D hypothetical protein 533817..535403 Rickettsia massiliae MTU5 5665015 YP_001499285.1 CDS folE NC_009900.1 535396 535965 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 535396..535965 Rickettsia massiliae MTU5 5665257 YP_001499286.1 CDS proS NC_009900.1 536098 537411 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 536098..537411 Rickettsia massiliae MTU5 5665258 YP_001499287.1 CDS RMA_0547 NC_009900.1 537616 538587 D cell filamentation protein Fic 537616..538587 Rickettsia massiliae MTU5 5665259 YP_001499288.1 CDS RMA_0548 NC_009900.1 538646 538984 D hypothetical protein 538646..538984 Rickettsia massiliae MTU5 5665833 YP_001499289.1 CDS ruvA NC_009900.1 538965 539603 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 538965..539603 Rickettsia massiliae MTU5 5665834 YP_001499290.1 CDS ruvB NC_009900.1 540774 541835 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 540774..541835 Rickettsia massiliae MTU5 5665835 YP_001499291.1 CDS msbA1 NC_009900.1 541783 543591 D multidrug resistance protein 541783..543591 Rickettsia massiliae MTU5 5665384 YP_001499292.1 CDS ampG4 NC_009900.1 543764 545014 D AmpG protein 543764..545014 Rickettsia massiliae MTU5 5665385 YP_001499293.1 CDS dacF NC_009900.1 545173 546114 D penicillin-binding protein dacF 545173..546114 Rickettsia massiliae MTU5 5665386 YP_001499294.1 CDS rlpA NC_009900.1 546284 547264 R rare lipoprotein A complement(546284..547264) Rickettsia massiliae MTU5 5665549 YP_001499295.1 CDS osmY NC_009900.1 547224 547847 R putative periplasmic or secreted lipoprotein complement(547224..547847) Rickettsia massiliae MTU5 5665550 YP_001499296.1 CDS ispZ NC_009900.1 548049 548591 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(548049..548591) Rickettsia massiliae MTU5 5665551 YP_001499297.1 CDS RMA_0557 NC_009900.1 548616 549473 R FTR1 family protein complement(548616..549473) Rickettsia massiliae MTU5 5665709 YP_001499298.1 CDS RMA_0558 NC_009900.1 549474 549914 R hypothetical protein complement(549474..549914) Rickettsia massiliae MTU5 5665710 YP_001499299.1 CDS RMA_0559 NC_009900.1 550060 551100 R hypothetical protein complement(550060..551100) Rickettsia massiliae MTU5 5665646 YP_001499300.1 CDS RMA_0560 NC_009900.1 551195 551821 D protocatechuate-3,4-dioxygenase subunit beta 551195..551821 Rickettsia massiliae MTU5 5665647 YP_001499301.1 CDS tlpA NC_009900.1 552011 552688 D Thiol:disulfide interchange protein tlpA 552011..552688 Rickettsia massiliae MTU5 5665648 YP_001499302.1 CDS sppA1 NC_009900.1 552838 553752 D signal peptide peptidase SppA 552838..553752 Rickettsia massiliae MTU5 5665695 YP_001499303.1 CDS dut NC_009900.1 553754 554200 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 553754..554200 Rickettsia massiliae MTU5 5665696 YP_001499304.1 CDS mltE1 NC_009900.1 554411 556384 D soluble lytic murein transglycosylase precursor 554411..556384 Rickettsia massiliae MTU5 5665697 YP_001499305.1 CDS RMA_0565 NC_009900.1 556455 557435 D hypothetical protein 556455..557435 Rickettsia massiliae MTU5 5665167 YP_001499306.1 CDS mccF NC_009900.1 557639 558595 D microcin C7 self-immunity protein 557639..558595 Rickettsia massiliae MTU5 5665168 YP_001499307.1 CDS RMA_0567 NC_009900.1 558818 561358 R endonuclease complement(558818..561358) Rickettsia massiliae MTU5 5665169 YP_001499308.1 CDS RMA_0568 NC_009900.1 561576 561866 D hypothetical protein 561576..561866 Rickettsia massiliae MTU5 5665499 YP_001499309.1 CDS RMA_0569 NC_009900.1 561899 562627 R putative glutamine amidotransferase complement(561899..562627) Rickettsia massiliae MTU5 5665500 YP_001499310.1 CDS coxA NC_009900.1 562834 564456 R cytochrome c oxidase polypeptide I complement(562834..564456) Rickettsia massiliae MTU5 5665501 YP_001499311.1 CDS coxB NC_009900.1 565045 566058 R cytochrome c oxidase polypeptide II complement(565045..566058) Rickettsia massiliae MTU5 5664934 YP_001499312.1 CDS nlpD2 NC_009900.1 566720 568177 D membrane-bound metallopeptidase 566720..568177 Rickettsia massiliae MTU5 5666030 YP_001499313.1 CDS lspA NC_009900.1 568122 569030 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 568122..569030 Rickettsia massiliae MTU5 5666031 YP_001499314.1 CDS RMA_0576 NC_009900.1 569133 569384 D hypothetical protein 569133..569384 Rickettsia massiliae MTU5 5665237 YP_001499315.1 CDS murD NC_009900.1 569556 571052 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 569556..571052 Rickettsia massiliae MTU5 5665238 YP_001499316.1 CDS ftsW NC_009900.1 571170 572318 D cell division protein ftsW 571170..572318 Rickettsia massiliae MTU5 5665239 YP_001499317.1 CDS murG NC_009900.1 572315 573445 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 572315..573445 Rickettsia massiliae MTU5 5665129 YP_001499318.1 CDS RMA_0580 NC_009900.1 573844 574512 D hypothetical protein 573844..574512 Rickettsia massiliae MTU5 5665130 YP_001499319.1 CDS RMA_0581 NC_009900.1 574917 575261 D hypothetical protein 574917..575261 Rickettsia massiliae MTU5 5665131 YP_001499320.1 CDS RMA_0592 NC_009900.1 581106 582131 R glycosyltransferase complement(581106..582131) Rickettsia massiliae MTU5 5665862 YP_001499321.1 CDS RMA_0593 NC_009900.1 582122 582667 R hypothetical protein complement(582122..582667) Rickettsia massiliae MTU5 5665778 YP_001499322.1 CDS dapF NC_009900.1 583100 583912 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 583100..583912 Rickettsia massiliae MTU5 5666104 YP_001499323.1 CDS RMA_0597 NC_009900.1 583887 585152 D MiaB-like tRNA modifying enzyme 583887..585152 Rickettsia massiliae MTU5 5666105 YP_001499324.1 CDS pheS NC_009900.1 585234 586403 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 585234..586403 Rickettsia massiliae MTU5 5666106 YP_001499325.1 CDS pheT NC_009900.1 586400 588856 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 586400..588856 Rickettsia massiliae MTU5 5665322 YP_001499326.1 CDS dnaN NC_009900.1 588861 590000 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 588861..590000 Rickettsia massiliae MTU5 5665323 YP_001499327.1 CDS RMA_0601 NC_009900.1 590367 590879 D hypothetical protein 590367..590879 Rickettsia massiliae MTU5 5665933 YP_001499328.1 CDS leuS NC_009900.1 591008 593515 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 591008..593515 Rickettsia massiliae MTU5 5665934 YP_001499329.1 CDS rnd2 NC_009900.1 594389 595000 R ribonuclease D complement(594389..595000) Rickettsia massiliae MTU5 5665935 YP_001499330.1 CDS RMA_0604 NC_009900.1 595151 595462 R septum formation initiator complement(595151..595462) Rickettsia massiliae MTU5 5665062 YP_001499331.1 CDS cdsA NC_009900.1 595437 596141 R phosphatidate cytidylyltransferase complement(595437..596141) Rickettsia massiliae MTU5 5665063 YP_001499332.1 CDS uppS NC_009900.1 596101 596808 R undecaprenyl pyrophosphate synthetase complement(596101..596808) Rickettsia massiliae MTU5 5665064 YP_001499333.1 CDS envZ NC_009900.1 596954 598396 R osmolarity sensor protein EnvZ complement(596954..598396) Rickettsia massiliae MTU5 5664928 YP_001499334.1 CDS ompR NC_009900.1 598371 599066 R PetR complement(598371..599066) Rickettsia massiliae MTU5 5664929 YP_001499335.1 CDS ilvE NC_009900.1 599267 600139 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 599267..600139 Rickettsia massiliae MTU5 5664930 YP_001499336.1 CDS dapA NC_009900.1 600307 601209 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 600307..601209 Rickettsia massiliae MTU5 5665387 YP_001499337.1 CDS smpB NC_009900.1 601188 601664 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 601188..601664 Rickettsia massiliae MTU5 5665388 YP_001499338.1 CDS dsbA NC_009900.1 601773 602597 D Thiol:disulfide interchange protein dsbA 601773..602597 Rickettsia massiliae MTU5 5665389 YP_001499339.1 CDS sucD NC_009900.1 602815 603693 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(602815..603693) Rickettsia massiliae MTU5 5665368 YP_001499340.1 CDS sucC NC_009900.1 603871 605031 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(603871..605031) Rickettsia massiliae MTU5 5665369 YP_001499341.1 CDS RMA_0617 NC_009900.1 605438 605713 R AbrB family transcriptional regulator complement(605438..605713) Rickettsia massiliae MTU5 5665579 YP_001499342.1 CDS RMA_0618 NC_009900.1 606488 608524 R acylamino-acid-releasing protein complement(606488..608524) Rickettsia massiliae MTU5 5665287 YP_001499343.1 CDS RMA_0619 NC_009900.1 608612 609247 R hypothetical protein complement(608612..609247) Rickettsia massiliae MTU5 5665288 YP_001499344.1 CDS rbfA NC_009900.1 610574 610927 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(610574..610927) Rickettsia massiliae MTU5 5665289 YP_001499345.1 CDS RMA_0621 NC_009900.1 610931 611401 R hypothetical protein complement(610931..611401) Rickettsia massiliae MTU5 5664904 YP_001499346.1 CDS RMA_0622 NC_009900.1 611495 612022 D RDD family protein 611495..612022 Rickettsia massiliae MTU5 5664905 YP_001499347.1 CDS recR NC_009900.1 612161 612772 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 612161..612772 Rickettsia massiliae MTU5 5664906 YP_001499348.1 CDS ppnK NC_009900.1 614933 615775 R catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase complement(614933..615775) Rickettsia massiliae MTU5 5666080 YP_001499349.1 CDS RMA_0627 NC_009900.1 615784 617469 D metallo-beta-lactamase family hydrolase 615784..617469 Rickettsia massiliae MTU5 5664984 YP_001499350.1 CDS gpsA NC_009900.1 617718 618710 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 617718..618710 Rickettsia massiliae MTU5 5664985 YP_001499351.1 CDS RMA_0629 NC_009900.1 619482 620432 D putative permease 619482..620432 Rickettsia massiliae MTU5 5665677 YP_001499352.1 CDS RMA_0630 NC_009900.1 620490 621365 D putative hydrolase/acyltransferase 620490..621365 Rickettsia massiliae MTU5 5665678 YP_001499353.1 CDS trxB1 NC_009900.1 621558 622499 D thioredoxin reductase 621558..622499 Rickettsia massiliae MTU5 5665679 YP_001499354.1 CDS RMA_0632 NC_009900.1 622730 623056 D hypothetical protein 622730..623056 Rickettsia massiliae MTU5 5665772 YP_001499355.1 CDS gabD NC_009900.1 623218 624696 D succinate semialdehyde dehydrogenase 623218..624696 Rickettsia massiliae MTU5 5665773 YP_001499356.1 CDS RMA_0634 NC_009900.1 624854 625204 D hypothetical protein 624854..625204 Rickettsia massiliae MTU5 5665774 YP_001499357.1 CDS lgtD NC_009900.1 625197 626042 D glycosyl transferase family protein 625197..626042 Rickettsia massiliae MTU5 5664941 YP_001499358.1 CDS uvrD NC_009900.1 626227 628188 D DNA helicase II 626227..628188 Rickettsia massiliae MTU5 5664942 YP_001499359.1 CDS RMA_0637 NC_009900.1 629651 631003 D hypothetical protein 629651..631003 Rickettsia massiliae MTU5 5664943 YP_001499360.1 CDS tdcB NC_009900.1 631180 632220 R catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase complement(631180..632220) Rickettsia massiliae MTU5 5666201 YP_001499361.1 CDS lon1 NC_009900.1 632294 634633 D ATP-dependent protease La 632294..634633 Rickettsia massiliae MTU5 5666202 YP_001499362.1 CDS RMA_0642 NC_009900.1 635796 636164 R hypothetical protein complement(635796..636164) Rickettsia massiliae MTU5 5666205 YP_001499363.1 CDS yhbH NC_009900.1 637259 637837 D putative sigma(54) modulation protein 637259..637837 Rickettsia massiliae MTU5 5665216 YP_001499364.1 CDS folD NC_009900.1 638361 639233 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(638361..639233) Rickettsia massiliae MTU5 5665514 YP_001499365.1 CDS trxB2 NC_009900.1 639380 640393 R thioredoxin reductase complement(639380..640393) Rickettsia massiliae MTU5 5665515 YP_001499366.1 CDS famC NC_009900.1 640740 641084 D P pilus assembly protein, chaperone PapD 640740..641084 Rickettsia massiliae MTU5 5665516 YP_001499367.1 CDS nrdA NC_009900.1 644926 646779 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 644926..646779 Rickettsia massiliae MTU5 5664982 YP_001499368.1 CDS nrdF NC_009900.1 647662 648672 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 647662..648672 Rickettsia massiliae MTU5 5665540 YP_001499369.1 CDS RMA_0658 NC_009900.1 648789 651656 D hypothetical protein 648789..651656 Rickettsia massiliae MTU5 5665541 YP_001499370.1 CDS miaA NC_009900.1 653695 654786 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(653695..654786) Rickettsia massiliae MTU5 5664895 YP_001499371.1 CDS exoC NC_009900.1 655337 656725 R phosphomannomutase complement(655337..656725) Rickettsia massiliae MTU5 5664896 YP_001499372.1 CDS abcT2 NC_009900.1 656896 657627 R ABC transporter ATP-binding protein complement(656896..657627) Rickettsia massiliae MTU5 5664897 YP_001499373.1 CDS RMA_0666 NC_009900.1 657802 658386 R hypothetical protein complement(657802..658386) Rickettsia massiliae MTU5 5664887 YP_001499374.1 CDS RMA_0667 NC_009900.1 658355 658951 R hypothetical protein complement(658355..658951) Rickettsia massiliae MTU5 5664888 YP_001499375.1 CDS kpsF NC_009900.1 658957 659931 R KpsF complement(658957..659931) Rickettsia massiliae MTU5 5664889 YP_001499376.1 CDS pnp NC_009900.1 660123 662360 R polynucleotide phosphorylase/polyadenylase complement(660123..662360) Rickettsia massiliae MTU5 5664935 YP_001499377.1 CDS rpsO NC_009900.1 662499 662807 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(662499..662807) Rickettsia massiliae MTU5 5664936 YP_001499378.1 CDS truB NC_009900.1 662810 663853 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; proteins in this cluster have Rickettsial repeat elements (RPE) inserts; tRNA pseudouridine synthase B complement(662810..663853) Rickettsia massiliae MTU5 5664937 YP_001499379.1 CDS tlc4 NC_009900.1 663929 665467 D ATP/ADP translocase 663929..665467 Rickettsia massiliae MTU5 5664947 YP_001499380.1 CDS sca4 NC_009900.1 665759 668842 D cell surface antigen Sca4 665759..668842 Rickettsia massiliae MTU5 5664948 YP_001499381.1 CDS hipB NC_009900.1 668965 669360 R putative transcriptional regulator complement(668965..669360) Rickettsia massiliae MTU5 5664954 YP_001499382.1 CDS rbn NC_009900.1 669849 670715 D putative ribonuclease BN 669849..670715 Rickettsia massiliae MTU5 5664955 YP_001499383.1 CDS glnA NC_009900.1 670880 671725 R glutamine synthetase complement(670880..671725) Rickettsia massiliae MTU5 5664956 YP_001499384.1 CDS RMA_0677 NC_009900.1 671697 672434 D hypothetical protein 671697..672434 Rickettsia massiliae MTU5 5665005 YP_001499385.1 CDS def2 NC_009900.1 672690 673259 D polypeptide deformylase 672690..673259 Rickettsia massiliae MTU5 5665006 YP_001499386.1 CDS RMA_0679 NC_009900.1 673464 673616 D antitoxin of toxin-antitoxin 673464..673616 Rickettsia massiliae MTU5 5665007 YP_001499387.1 CDS addA NC_009900.1 674132 674839 R hypothetical protein complement(674132..674839) Rickettsia massiliae MTU5 5665074 YP_001499388.1 CDS RMA_0682 NC_009900.1 675063 676877 R hypothetical protein complement(675063..676877) Rickettsia massiliae MTU5 5665075 YP_001499389.1 CDS ppdK NC_009900.1 677124 679775 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase complement(677124..679775) Rickettsia massiliae MTU5 5665065 YP_001499390.1 CDS RMA_0684 NC_009900.1 680701 681369 D glutathione S-transferase 680701..681369 Rickettsia massiliae MTU5 5665150 YP_001499391.1 CDS bpl1 NC_009900.1 681480 682268 R biotin-protein ligase complement(681480..682268) Rickettsia massiliae MTU5 5665067 YP_001499392.1 CDS bioY2 NC_009900.1 682308 682850 D BioY family protein 682308..682850 Rickettsia massiliae MTU5 5665094 YP_001499393.1 CDS folC NC_009900.1 683027 684313 D folylpolyglutamate synthase 683027..684313 Rickettsia massiliae MTU5 5665095 YP_001499394.1 CDS sodB NC_009900.1 684457 685113 D superoxide dismutase 684457..685113 Rickettsia massiliae MTU5 5665096 YP_001499395.1 CDS rssA NC_009900.1 685118 686914 D putative esterase of the alpha/beta hydrolase superfamily protein 685118..686914 Rickettsia massiliae MTU5 5665172 YP_001499396.1 CDS birA NC_009900.1 687023 687835 D biotin-(acetyl-CoA carboxylase) ligase 687023..687835 Rickettsia massiliae MTU5 5665173 YP_001499397.1 CDS RMA_0691 NC_009900.1 688712 689128 D hypothetical protein 688712..689128 Rickettsia massiliae MTU5 5665217 YP_001499398.1 CDS RMA_0693 NC_009900.1 690088 690495 D hypothetical protein 690088..690495 Rickettsia massiliae MTU5 5665219 YP_001499399.1 CDS RMA_0697 NC_009900.1 693299 693616 D nucleotidyltransferase substrate binding protein 693299..693616 Rickettsia massiliae MTU5 5665362 YP_001499400.1 CDS RMA_0699 NC_009900.1 693912 694085 D hypothetical protein 693912..694085 Rickettsia massiliae MTU5 5665364 YP_001499401.1 CDS RMA_0700 NC_009900.1 694072 694401 D hypothetical protein 694072..694401 Rickettsia massiliae MTU5 5665372 YP_001499402.1 CDS infC NC_009900.1 694444 695025 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 694444..695025 Rickettsia massiliae MTU5 5665373 YP_001499403.1 CDS pdhC NC_009900.1 695171 696409 D branched-chain alpha-keto acid dehydrogenase subunit E2 695171..696409 Rickettsia massiliae MTU5 5665374 YP_001499404.1 CDS prfA NC_009900.1 696542 697627 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 696542..697627 Rickettsia massiliae MTU5 5665390 YP_001499405.1 CDS recJ NC_009900.1 697572 699398 D single-stranded-DNA-specific exonuclease RecJ 697572..699398 Rickettsia massiliae MTU5 5665391 YP_001499406.1 CDS RMA_0705 NC_009900.1 699444 700766 D putative methyltransferase 699444..700766 Rickettsia massiliae MTU5 5665392 YP_001499407.1 CDS rho NC_009900.1 701107 702513 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 701107..702513 Rickettsia massiliae MTU5 5665443 YP_001499408.1 CDS sppA2 NC_009900.1 702639 703556 D signal peptide peptidase SppA 702639..703556 Rickettsia massiliae MTU5 5665444 YP_001499409.1 CDS himD NC_009900.1 703556 703801 D integration host factor beta-subunit 703556..703801 Rickettsia massiliae MTU5 5665522 YP_001499410.1 CDS RMA_0713 NC_009900.1 707761 708921 D integrase 707761..708921 Rickettsia massiliae MTU5 5665565 YP_001499411.1 CDS RMA_0714 NC_009900.1 709137 709760 D Phage-associated protein 709137..709760 Rickettsia massiliae MTU5 5665871 YP_001499412.1 CDS RMA_0715 NC_009900.1 709757 710017 D putative toxin of toxin-antitoxin 709757..710017 Rickettsia massiliae MTU5 5665872 YP_001499413.1 CDS RMA_0716 NC_009900.1 710474 710788 D hypothetical protein 710474..710788 Rickettsia massiliae MTU5 5665873 YP_001499414.1 CDS traE NC_009900.1 710788 711342 D conjugative transfer protein TraE 710788..711342 Rickettsia massiliae MTU5 5665319 YP_001499415.1 CDS RMA_0718 NC_009900.1 711339 711794 D hypothetical protein 711339..711794 Rickettsia massiliae MTU5 5665320 YP_001499416.1 CDS RMA_0719 NC_009900.1 711733 712086 D hypothetical protein 711733..712086 Rickettsia massiliae MTU5 5665321 YP_001499417.1 CDS traB NC_009900.1 712111 713523 D F pilus assembly protein TraB 712111..713523 Rickettsia massiliae MTU5 5665631 YP_001499418.1 CDS traV NC_009900.1 713523 713762 D conjugative transfer protein TraV 713523..713762 Rickettsia massiliae MTU5 5665632 YP_001499419.1 CDS RMA_0722 NC_009900.1 713762 716281 D conjugative transfer protein TraC 713762..716281 Rickettsia massiliae MTU5 5665633 YP_001499420.1 CDS RMA_0723 NC_009900.1 716369 717955 D ATPase family protein 716369..717955 Rickettsia massiliae MTU5 5665819 YP_001499421.1 CDS traU NC_009900.1 719018 719998 D conjugal DNA transfer protein TraU 719018..719998 Rickettsia massiliae MTU5 5665925 YP_001499422.1 CDS trbC NC_009900.1 719983 720450 D conjugative transfer protein TrbC 719983..720450 Rickettsia massiliae MTU5 5665926 YP_001499423.1 CDS traN NC_009900.1 720420 722246 D conjugative transfer protein TraN 720420..722246 Rickettsia massiliae MTU5 5665951 YP_001499424.1 CDS traF NC_009900.1 722212 723123 D F pilus assembly protein TraF 722212..723123 Rickettsia massiliae MTU5 5665952 YP_001499425.1 CDS traH NC_009900.1 723138 724478 D F pilus assembly protein TraH 723138..724478 Rickettsia massiliae MTU5 5665953 YP_001499426.1 CDS traG NC_009900.1 724557 727286 D conjugative transfer protein TraG 724557..727286 Rickettsia massiliae MTU5 5666044 YP_001499427.1 CDS RMA_0732 NC_009900.1 727264 728466 D hypothetical protein 727264..728466 Rickettsia massiliae MTU5 5666045 YP_001499428.1 CDS traD_F NC_009900.1 728456 730162 D putative conjugative transfer protein TraD 728456..730162 Rickettsia massiliae MTU5 5666046 YP_001499429.1 CDS RMA_0734 NC_009900.1 730392 731435 R transposase complement(730392..731435) Rickettsia massiliae MTU5 5665927 YP_001499430.1 CDS traA_Ti NC_009900.1 731479 735615 R conjugal transfer protein TraA complement(731479..735615) Rickettsia massiliae MTU5 5665928 YP_001499431.1 CDS RMA_0736 NC_009900.1 736269 737219 D transposase 736269..737219 Rickettsia massiliae MTU5 5665929 YP_001499432.1 CDS RMA_0739 NC_009900.1 738541 739035 R hypothetical protein complement(738541..739035) Rickettsia massiliae MTU5 5666126 YP_001499433.1 CDS RMA_0740 NC_009900.1 739025 739786 R transposase complement(739025..739786) Rickettsia massiliae MTU5 5666053 YP_001499434.1 CDS RMA_0742 NC_009900.1 740443 740886 R transposase complement(740443..740886) Rickettsia massiliae MTU5 5665687 YP_001499435.1 CDS RMA_0745 NC_009900.1 742440 742772 D transposase 742440..742772 Rickettsia massiliae MTU5 5666139 YP_001499436.1 CDS RMA_0746 NC_009900.1 742738 743607 D transposase 742738..743607 Rickettsia massiliae MTU5 5666140 YP_001499437.1 CDS RMA_0747 NC_009900.1 743852 744826 R transposase complement(743852..744826) Rickettsia massiliae MTU5 5666141 YP_001499438.1 CDS RMA_0748 NC_009900.1 745038 746159 D transposase 745038..746159 Rickettsia massiliae MTU5 5666251 YP_001499439.1 CDS RMA_0749 NC_009900.1 746171 746776 R transposase complement(746171..746776) Rickettsia massiliae MTU5 5666252 YP_001499440.1 CDS RMA_0750 NC_009900.1 747230 748666 D transposase 747230..748666 Rickettsia massiliae MTU5 5666253 YP_001499441.1 CDS dnaE2 NC_009900.1 748783 757167 R DNA polymerase III subunit alpha complement(748783..757167) Rickettsia massiliae MTU5 5666236 YP_001499442.1 CDS traD_Ti NC_009900.1 757523 757819 D conjugal transfer protein TraD 757523..757819 Rickettsia massiliae MTU5 5666237 YP_001499443.1 CDS spoT6 NC_009900.1 757845 758504 R guanosine polyphosphate pyrophosphohydrolase/synthetase complement(757845..758504) Rickettsia massiliae MTU5 5666238 YP_001499444.1 CDS RMA_0754 NC_009900.1 758663 759679 R Signal transduction histidine kinase complement(758663..759679) Rickettsia massiliae MTU5 5666225 YP_001499445.1 CDS dam2 NC_009900.1 759968 760768 D site-specific DNA adenine methylase 759968..760768 Rickettsia massiliae MTU5 5666226 YP_001499446.1 CDS RMA_0756 NC_009900.1 761012 762733 R hypothetical protein complement(761012..762733) Rickettsia massiliae MTU5 5666227 YP_001499447.1 CDS RMA_0757 NC_009900.1 763296 763451 D hypothetical protein 763296..763451 Rickettsia massiliae MTU5 5665151 YP_001499448.1 CDS cmk NC_009900.1 763545 764234 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 763545..764234 Rickettsia massiliae MTU5 5666224 YP_001499449.1 CDS rpsA NC_009900.1 764382 766088 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 764382..766088 Rickettsia massiliae MTU5 5666217 YP_001499450.1 CDS clpP NC_009900.1 766200 766850 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 766200..766850 Rickettsia massiliae MTU5 5666218 YP_001499451.1 CDS fni NC_009900.1 769554 770594 D catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 769554..770594 Rickettsia massiliae MTU5 5665089 YP_001499452.1 CDS RMA_0767 NC_009900.1 770743 770892 R putative acetyltransferase complement(770743..770892) Rickettsia massiliae MTU5 5665090 YP_001499453.1 CDS RMA_0769 NC_009900.1 771134 771592 R acetyltransferase GNAT family protein complement(771134..771592) Rickettsia massiliae MTU5 5665110 YP_001499454.1 CDS RMA_0770 NC_009900.1 771651 772169 R hypothetical protein complement(771651..772169) Rickettsia massiliae MTU5 5665111 YP_001499455.1 CDS RMA_0772 NC_009900.1 772610 773104 R hypothetical protein complement(772610..773104) Rickettsia massiliae MTU5 5664877 YP_001499456.1 CDS glmU NC_009900.1 774548 775294 R UDP-N-acetylglucosamine pyrophosphorylase complement(774548..775294) Rickettsia massiliae MTU5 5665470 YP_001499457.1 CDS RMA_0775 NC_009900.1 775291 776217 R hypothetical protein complement(775291..776217) Rickettsia massiliae MTU5 5664987 YP_001499458.1 CDS rpmJ NC_009900.1 776263 776388 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 complement(776263..776388) Rickettsia massiliae MTU5 5664988 YP_001499459.1 CDS RMA_0778 NC_009900.1 776909 777658 D hypothetical protein 776909..777658 Rickettsia massiliae MTU5 5665022 YP_001499460.1 CDS mltE2 NC_009900.1 777760 778602 D soluble lytic murein transglycosylase and related regulatory protein 777760..778602 Rickettsia massiliae MTU5 5665023 YP_001499461.1 CDS RMA_0780 NC_009900.1 778586 779092 D hypothetical protein 778586..779092 Rickettsia massiliae MTU5 5665068 YP_001499462.1 CDS RMA_0781 NC_009900.1 779409 779918 D transposase 779409..779918 Rickettsia massiliae MTU5 5665069 YP_001499463.1 CDS RMA_0785 NC_009900.1 781799 782620 D hypothetical protein 781799..782620 Rickettsia massiliae MTU5 5665246 YP_001499464.1 CDS lpdA2 NC_009900.1 782776 784155 D Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 782776..784155 Rickettsia massiliae MTU5 5665247 YP_001499465.1 CDS RMA_0787 NC_009900.1 784403 784972 D 5-formyltetrahydrofolate cyclo-ligase 784403..784972 Rickettsia massiliae MTU5 5665248 YP_001499466.1 CDS rnd NC_009900.1 785365 786219 R ribonuclease D complement(785365..786219) Rickettsia massiliae MTU5 5665271 YP_001499467.1 CDS RMA_0789 NC_009900.1 786220 787056 R hypothetical protein complement(786220..787056) Rickettsia massiliae MTU5 5665272 YP_001499468.1 CDS RMA_0790 NC_009900.1 787115 788131 D related to GcvT; putative aminomethyltransferase 787115..788131 Rickettsia massiliae MTU5 5665273 YP_001499469.1 CDS RMA_0791 NC_009900.1 788761 789423 D ankyrin repeat-containing protein 788761..789423 Rickettsia massiliae MTU5 5665313 YP_001499470.1 CDS mccF2 NC_009900.1 792650 793666 D microcin C7 resistance protein 792650..793666 Rickettsia massiliae MTU5 5665461 YP_001499471.1 CDS hemC NC_009900.1 793663 794718 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 793663..794718 Rickettsia massiliae MTU5 5665472 YP_001499472.1 CDS trpS NC_009900.1 796626 797618 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(796626..797618) Rickettsia massiliae MTU5 5665471 YP_001499473.1 CDS plsC NC_009900.1 797697 798422 D 1-acyl-sn-glycerol-3-phosphate acyltransferase 797697..798422 Rickettsia massiliae MTU5 5665487 YP_001499474.1 CDS RMA_0805 NC_009900.1 798475 798927 D AtsE-like protein 798475..798927 Rickettsia massiliae MTU5 5665505 YP_001499475.1 CDS RMA_0806 NC_009900.1 799486 800211 D alpha/beta family hydrolase 799486..800211 Rickettsia massiliae MTU5 5665506 YP_001499476.1 CDS RMA_0809 NC_009900.1 801446 802213 R hypothetical protein complement(801446..802213) Rickettsia massiliae MTU5 5665438 YP_001499477.1 CDS RMA_0810 NC_009900.1 802191 802919 R hypothetical protein complement(802191..802919) Rickettsia massiliae MTU5 5665439 YP_001499478.1 CDS lysE NC_009900.1 802846 803487 R lysine efflux permease complement(802846..803487) Rickettsia massiliae MTU5 5665651 YP_001499479.1 CDS ampG1 NC_009900.1 803895 805310 R AmpG protein complement(803895..805310) Rickettsia massiliae MTU5 5665652 YP_001499480.1 CDS tlc3 NC_009900.1 806395 807921 D ATP/ADP translocase 806395..807921 Rickettsia massiliae MTU5 5665336 YP_001499481.1 CDS RMA_0817 NC_009900.1 807941 809689 D hypothetical protein 807941..809689 Rickettsia massiliae MTU5 5665337 YP_001499482.1 CDS ispB NC_009900.1 809696 810787 D octaprenyl-diphosphate synthase 809696..810787 Rickettsia massiliae MTU5 5665338 YP_001499483.1 CDS pepP NC_009900.1 811080 813110 R aminopeptidase P complement(811080..813110) Rickettsia massiliae MTU5 5665370 YP_001499484.1 CDS potE NC_009900.1 813213 814502 R putrescine-ornithine antiporter complement(813213..814502) Rickettsia massiliae MTU5 5665175 YP_001499485.1 CDS iscA2 NC_009900.1 815619 815972 R Iron-sulfur cluster assembly accessory protein complement(815619..815972) Rickettsia massiliae MTU5 5665176 YP_001499486.1 CDS iscU NC_009900.1 815976 816377 R scaffold protein complement(815976..816377) Rickettsia massiliae MTU5 5665711 YP_001499487.1 CDS iscS NC_009900.1 816523 817755 R catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase complement(816523..817755) Rickettsia massiliae MTU5 5665712 YP_001499488.1 CDS spl1 NC_009900.1 817858 818976 R NifS-like protein complement(817858..818976) Rickettsia massiliae MTU5 5665713 YP_001499489.1 CDS iscR NC_009900.1 818973 819392 R Iron-sulfur cluster assembly transcription factor IscR complement(818973..819392) Rickettsia massiliae MTU5 5665628 YP_001499490.1 CDS RMA_0829 NC_009900.1 821430 822317 R hypothetical protein complement(821430..822317) Rickettsia massiliae MTU5 5665742 YP_001499491.1 CDS nuoN1 NC_009900.1 827620 828996 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 827620..828996 Rickettsia massiliae MTU5 5664912 YP_001499492.1 CDS RMA_0835 NC_009900.1 828983 830527 R hypothetical protein complement(828983..830527) Rickettsia massiliae MTU5 5664913 YP_001499493.1 CDS hemB NC_009900.1 830622 831623 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(830622..831623) Rickettsia massiliae MTU5 5665408 YP_001499494.1 CDS RMA_0837 NC_009900.1 831788 832834 D hypothetical protein 831788..832834 Rickettsia massiliae MTU5 5665409 YP_001499495.1 CDS priA NC_009900.1 832831 834777 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(832831..834777) Rickettsia massiliae MTU5 5665410 YP_001499496.1 CDS ubiX NC_009900.1 834841 835416 D aromatic acid decarboxylase 834841..835416 Rickettsia massiliae MTU5 5665836 YP_001499497.1 CDS dnaB NC_009900.1 835795 837282 D unwinds double stranded DNA; replicative DNA helicase 835795..837282 Rickettsia massiliae MTU5 5665837 YP_001499498.1 CDS rluA2 NC_009900.1 838994 839683 D ribosomal large subunit pseudouridine synthase 838994..839683 Rickettsia massiliae MTU5 5665399 YP_001499499.1 CDS RMA_0846 NC_009900.1 839705 842599 D hypothetical protein 839705..842599 Rickettsia massiliae MTU5 5665400 YP_001499500.1 CDS RMA_0847 NC_009900.1 842604 843401 D N6-adenine-specific methylase 842604..843401 Rickettsia massiliae MTU5 5665401 YP_001499501.1 CDS radA NC_009900.1 843373 844707 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 843373..844707 Rickettsia massiliae MTU5 5665900 YP_001499502.1 CDS RMA_0849 NC_009900.1 844704 845018 D hypothetical protein 844704..845018 Rickettsia massiliae MTU5 5665901 YP_001499503.1 CDS recO NC_009900.1 845076 845900 D involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 845076..845900 Rickettsia massiliae MTU5 5665954 YP_001499504.1 CDS RMA_0851 NC_009900.1 846320 847012 D putative glycoprotein endopeptidase 846320..847012 Rickettsia massiliae MTU5 5665955 YP_001499505.1 CDS RMA_0852 NC_009900.1 847072 848382 R hypothetical protein complement(847072..848382) Rickettsia massiliae MTU5 5665956 YP_001499506.1 CDS infB NC_009900.1 848756 851251 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(848756..851251) Rickettsia massiliae MTU5 5665939 YP_001499507.1 CDS nusA NC_009900.1 851490 853001 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(851490..853001) Rickettsia massiliae MTU5 5665940 YP_001499508.1 CDS RMA_0855 NC_009900.1 853012 853506 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(853012..853506) Rickettsia massiliae MTU5 5665941 YP_001499509.1 CDS RMA_0856 NC_009900.1 853850 854641 R hypothetical protein complement(853850..854641) Rickettsia massiliae MTU5 5665994 YP_001499510.1 CDS tlyA NC_009900.1 855390 856163 R hemolysin A complement(855390..856163) Rickettsia massiliae MTU5 5665800 YP_001499511.1 CDS tyrS NC_009900.1 856304 857539 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(856304..857539) Rickettsia massiliae MTU5 5665801 YP_001499512.1 CDS RMA_0861 NC_009900.1 857543 857827 R hypothetical protein complement(857543..857827) Rickettsia massiliae MTU5 5665802 YP_001499513.1 CDS RMA_0862 NC_009900.1 857830 858120 R hypothetical protein complement(857830..858120) Rickettsia massiliae MTU5 5665827 YP_001499514.1 CDS RMA_0863 NC_009900.1 858315 858623 R hypothetical protein complement(858315..858623) Rickettsia massiliae MTU5 5665828 YP_001499515.1 CDS RMA_0864 NC_009900.1 859298 859831 D hypothetical protein 859298..859831 Rickettsia massiliae MTU5 5665829 YP_001499516.1 CDS RMA_0869 NC_009900.1 864078 864560 R hypothetical protein complement(864078..864560) Rickettsia massiliae MTU5 5666025 YP_001499517.1 CDS RMA_0870 NC_009900.1 864625 864906 R hypothetical protein complement(864625..864906) Rickettsia massiliae MTU5 5666055 YP_001499518.1 CDS RMA_0872 NC_009900.1 865492 865920 R hypothetical protein complement(865492..865920) Rickettsia massiliae MTU5 5666057 YP_001499519.1 CDS RMA_0876 NC_009900.1 868792 874476 D large extracellular alpha-helical protein 868792..874476 Rickettsia massiliae MTU5 5665965 YP_001499520.1 CDS comF2 NC_009900.1 876975 877334 R competence protein F complement(876975..877334) Rickettsia massiliae MTU5 5665675 YP_001499521.1 CDS ubiH NC_009900.1 879417 880712 R Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(879417..880712) Rickettsia massiliae MTU5 5665359 YP_001499522.1 CDS RMA_0887 NC_009900.1 880684 881019 R subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit F complement(880684..881019) Rickettsia massiliae MTU5 5666162 YP_001499523.1 CDS ntrX NC_009900.1 881489 882925 D nitrogen assimilation regulatory protein NtrX 881489..882925 Rickettsia massiliae MTU5 5666163 YP_001499524.1 CDS RMA_0889 NC_009900.1 882894 884663 D hypothetical protein 882894..884663 Rickettsia massiliae MTU5 5666164 YP_001499525.1 CDS RMA_0890 NC_009900.1 884881 885885 R hypothetical protein complement(884881..885885) Rickettsia massiliae MTU5 5666086 YP_001499526.1 CDS pbpA1 NC_009900.1 886517 888313 R penicillin-binding protein complement(886517..888313) Rickettsia massiliae MTU5 5666087 YP_001499527.1 CDS RMA_0892 NC_009900.1 888288 888815 R hypothetical protein complement(888288..888815) Rickettsia massiliae MTU5 5666088 YP_001499528.1 CDS pbpA2 NC_009900.1 889434 891119 R penicillin-binding protein complement(889434..891119) Rickettsia massiliae MTU5 5665103 YP_001499529.1 CDS ftsL NC_009900.1 891463 891864 R cell division protein FtsL complement(891463..891864) Rickettsia massiliae MTU5 5665104 YP_001499530.1 CDS mraW NC_009900.1 891868 892791 R S-adenosyl-methyltransferase MraW complement(891868..892791) Rickettsia massiliae MTU5 5665105 YP_001499531.1 CDS mraZ NC_009900.1 892791 893297 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(892791..893297) Rickettsia massiliae MTU5 5665683 YP_001499532.1 CDS panF NC_009900.1 894829 896226 D Sodium/pantothenate symporter 894829..896226 Rickettsia massiliae MTU5 5666129 YP_001499533.1 CDS RMA_0900 NC_009900.1 896288 896611 D hypothetical protein 896288..896611 Rickettsia massiliae MTU5 5666130 YP_001499534.1 CDS uvrC NC_009900.1 896854 898743 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(896854..898743) Rickettsia massiliae MTU5 5665839 YP_001499535.1 CDS RMA_0902 NC_009900.1 898911 899453 R hypothetical protein complement(898911..899453) Rickettsia massiliae MTU5 5665840 YP_001499536.1 CDS RMA_0903 NC_009900.1 899639 900277 R putative DNA alkylation repair protein complement(899639..900277) Rickettsia massiliae MTU5 5665841 YP_001499537.1 CDS RMA_0908 NC_009900.1 904647 904856 R hypothetical protein complement(904647..904856) Rickettsia massiliae MTU5 5665686 YP_001499538.1 CDS secA NC_009900.1 906623 909358 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(906623..909358) Rickettsia massiliae MTU5 5666213 YP_001499539.1 CDS prsA NC_009900.1 909577 910425 D protein export protein prsA 909577..910425 Rickettsia massiliae MTU5 5666231 YP_001499540.1 CDS acpS NC_009900.1 910633 911028 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(910633..911028) Rickettsia massiliae MTU5 5666232 YP_001499541.1 CDS rpoZ NC_009900.1 911029 911517 R Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(911029..911517) Rickettsia massiliae MTU5 5666245 YP_001499542.1 CDS murA NC_009900.1 911583 912842 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(911583..912842) Rickettsia massiliae MTU5 5666246 YP_001499543.1 CDS gyrB NC_009900.1 913002 915428 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(913002..915428) Rickettsia massiliae MTU5 5666247 YP_001499544.1 CDS RMA_0918 NC_009900.1 915581 916549 D HAD family hydrolase 915581..916549 Rickettsia massiliae MTU5 5666257 YP_001499545.1 CDS mgtE NC_009900.1 917056 918426 D magnesium transporter 917056..918426 Rickettsia massiliae MTU5 5665704 YP_001499546.1 CDS proP9 NC_009900.1 919666 920010 R proline/betaine transporter complement(919666..920010) Rickettsia massiliae MTU5 5666265 YP_001499547.1 CDS RMA_0924 NC_009900.1 921645 921875 R putative antitoxin of toxin-antitoxin complement(921645..921875) Rickettsia massiliae MTU5 5665705 YP_001499548.1 CDS yajC NC_009900.1 922192 922692 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 922192..922692 Rickettsia massiliae MTU5 5666278 YP_001499549.1 CDS secD NC_009900.1 922676 924232 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 922676..924232 Rickettsia massiliae MTU5 5666279 YP_001499550.1 CDS RMA_0927 NC_009900.1 924458 925090 D Sco2 protein precursor 924458..925090 Rickettsia massiliae MTU5 5664873 YP_001499551.1 CDS RMA_0928 NC_009900.1 925083 925214 D hypothetical protein 925083..925214 Rickettsia massiliae MTU5 5664874 YP_001499552.1 CDS ccmE NC_009900.1 925177 925578 D CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 925177..925578 Rickettsia massiliae MTU5 5664875 YP_001499553.1 CDS ppa NC_009900.1 925696 926229 D catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 925696..926229 Rickettsia massiliae MTU5 5665097 YP_001499554.1 CDS mviN NC_009900.1 926433 928100 D integral membrane protein MviN 926433..928100 Rickettsia massiliae MTU5 5665098 YP_001499555.1 CDS traX NC_009900.1 928078 928833 D F pilin acetylation protein TraX 928078..928833 Rickettsia massiliae MTU5 5665099 YP_001499556.1 CDS RMA_0933 NC_009900.1 928871 929509 D hypothetical protein 928871..929509 Rickettsia massiliae MTU5 5665076 YP_001499557.1 CDS recG NC_009900.1 929724 931865 R ATP-dependent DNA helicase RecG complement(929724..931865) Rickettsia massiliae MTU5 5665077 YP_001499558.1 CDS scoA NC_009900.1 933321 933962 D succinyl-CoA:3-ketoacid-coenzyme A transferase 933321..933962 Rickettsia massiliae MTU5 5665124 YP_001499559.1 CDS scoB NC_009900.1 934019 934549 D succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B 934019..934549 Rickettsia massiliae MTU5 5665125 YP_001499560.1 CDS rickA NC_009900.1 935288 936886 R Actin polymerization protein RickA complement(935288..936886) Rickettsia massiliae MTU5 5665140 YP_001499561.1 CDS mraY NC_009900.1 936998 938107 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(936998..938107) Rickettsia massiliae MTU5 5665191 YP_001499562.1 CDS murF NC_009900.1 938286 939635 R UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase complement(938286..939635) Rickettsia massiliae MTU5 5665192 YP_001499563.1 CDS murE NC_009900.1 939839 941293 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(939839..941293) Rickettsia massiliae MTU5 5665193 YP_001499564.1 CDS mfd NC_009900.1 941425 944829 R transcription-repair coupling factor complement(941425..944829) Rickettsia massiliae MTU5 5665240 YP_001499565.1 CDS RMA_0946 NC_009900.1 944805 945068 R hypothetical protein complement(944805..945068) Rickettsia massiliae MTU5 5665241 YP_001499566.1 CDS pspE NC_009900.1 945232 945603 D rhodanese-related sulfurtransferase 945232..945603 Rickettsia massiliae MTU5 5665242 YP_001499567.1 CDS dnaA NC_009900.1 945604 946995 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 945604..946995 Rickettsia massiliae MTU5 5665284 YP_001499568.1 CDS pat1 NC_009900.1 949291 950766 D patatin-like phospholipase 949291..950766 Rickettsia massiliae MTU5 5665311 YP_001499569.1 CDS ychF NC_009900.1 953048 954202 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(953048..954202) Rickettsia massiliae MTU5 5665465 YP_001499570.1 CDS pth NC_009900.1 954758 955321 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(954758..955321) Rickettsia massiliae MTU5 5665405 YP_001499571.1 CDS rplY NC_009900.1 955637 956272 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc complement(955637..956272) Rickettsia massiliae MTU5 5665406 YP_001499572.1 CDS nrdG NC_009900.1 957027 957722 R organic radical activating protein complement(957027..957722) Rickettsia massiliae MTU5 5665407 YP_001499573.1 CDS rpmI NC_009900.1 957798 958076 D 50S ribosomal protein L35 957798..958076 Rickettsia massiliae MTU5 5665502 YP_001499574.1 CDS rplT NC_009900.1 958096 958449 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 958096..958449 Rickettsia massiliae MTU5 5665503 YP_001499575.1 CDS rpmH NC_009900.1 958523 958666 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 958523..958666 Rickettsia massiliae MTU5 5665504 YP_001499576.1 CDS rnpA NC_009900.1 958680 959042 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 958680..959042 Rickettsia massiliae MTU5 5665543 YP_001499577.1 CDS RMA_0967 NC_009900.1 959502 961028 R hypothetical protein complement(959502..961028) Rickettsia massiliae MTU5 5665544 YP_001499578.1 CDS RMA_0970 NC_009900.1 963073 963516 R transposase complement(963073..963516) Rickettsia massiliae MTU5 5665581 YP_001499579.1 CDS corA NC_009900.1 963691 964650 R magnesium/cobalt transporter CorA complement(963691..964650) Rickettsia massiliae MTU5 5665582 YP_001499580.1 CDS RMA_0972 NC_009900.1 965072 965515 D transposase 965072..965515 Rickettsia massiliae MTU5 5665637 YP_001499581.1 CDS RMA_0973 NC_009900.1 966505 966828 R transposase complement(966505..966828) Rickettsia massiliae MTU5 5665638 YP_001499582.1 CDS ntrY NC_009900.1 971220 973019 R nitrogen regulation protein NtrY complement(971220..973019) Rickettsia massiliae MTU5 5665752 YP_001499583.1 CDS rpsU NC_009900.1 973381 973587 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(973381..973587) Rickettsia massiliae MTU5 5665454 YP_001499584.1 CDS RMA_0979 NC_009900.1 973615 974271 D hypothetical protein 973615..974271 Rickettsia massiliae MTU5 5665455 YP_001499585.1 CDS ileS NC_009900.1 975601 978921 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 975601..978921 Rickettsia massiliae MTU5 5665760 YP_001499586.1 CDS accC NC_009900.1 981232 983292 R Acetyl-CoA carboxylase, biotin carboxylase complement(981232..983292) Rickettsia massiliae MTU5 5665757 YP_001499587.1 CDS pccB NC_009900.1 983327 984871 R propionyl-CoA carboxylase subunit beta complement(983327..984871) Rickettsia massiliae MTU5 5665758 YP_001499588.1 CDS RMA_0987 NC_009900.1 985238 985681 R transposase complement(985238..985681) Rickettsia massiliae MTU5 5665805 YP_001499589.1 CDS aas NC_009900.1 986028 989474 D Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein; acylglycerophosphoethanolamine acyltransferase 986028..989474 Rickettsia massiliae MTU5 5665806 YP_001499590.1 CDS tfoX NC_009900.1 989726 990010 R regulator of competence-specific genes TfoX complement(989726..990010) Rickettsia massiliae MTU5 5665807 YP_001499591.1 CDS znuB NC_009900.1 989950 990711 R Zinc/manganese ABC transporter permease protein complement(989950..990711) Rickettsia massiliae MTU5 5665848 YP_001499592.1 CDS ubiG NC_009900.1 990846 991715 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 990846..991715 Rickettsia massiliae MTU5 5665849 YP_001499593.1 CDS gltX NC_009900.1 991932 993473 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 991932..993473 Rickettsia massiliae MTU5 5665850 YP_001499594.1 CDS RMA_0993 NC_009900.1 993470 994006 D hypothetical protein 993470..994006 Rickettsia massiliae MTU5 5665882 YP_001499595.1 CDS RMA_0994 NC_009900.1 994632 995075 R transposase complement(994632..995075) Rickettsia massiliae MTU5 5665883 YP_001499596.1 CDS spoT14 NC_009900.1 995884 996588 D guanosine polyphosphate pyrophosphohydrolase/synthetase 995884..996588 Rickettsia massiliae MTU5 5665884 YP_001499597.1 CDS spoT12 NC_009900.1 996713 997132 R guanosine polyphosphate pyrophosphohydrolase/synthetase complement(996713..997132) Rickettsia massiliae MTU5 5665885 YP_001499598.1 CDS groEL NC_009900.1 998092 999762 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(998092..999762) Rickettsia massiliae MTU5 5665886 YP_001499599.1 CDS groES NC_009900.1 999762 1000061 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(999762..1000061) Rickettsia massiliae MTU5 5665887 YP_001499600.1 CDS rph NC_009900.1 1004948 1005700 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(1004948..1005700) Rickettsia massiliae MTU5 5666033 YP_001499601.1 CDS grpE NC_009900.1 1005846 1006430 D with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 1005846..1006430 Rickettsia massiliae MTU5 5666034 YP_001499602.1 CDS perM NC_009900.1 1006450 1007628 D permease PerM-like protein 1006450..1007628 Rickettsia massiliae MTU5 5666112 YP_001499603.1 CDS RMA_1009 NC_009900.1 1007632 1008315 D hypothetical protein 1007632..1008315 Rickettsia massiliae MTU5 5666113 YP_001499604.1 CDS rpsT NC_009900.1 1011739 1012026 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(1011739..1012026) Rickettsia massiliae MTU5 5666206 YP_001499605.1 CDS rplQ NC_009900.1 1012030 1012440 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(1012030..1012440) Rickettsia massiliae MTU5 5665619 YP_001499606.1 CDS rpoA NC_009900.1 1012451 1013473 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(1012451..1013473) Rickettsia massiliae MTU5 5665620 YP_001499607.1 CDS rpsK NC_009900.1 1013492 1013878 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(1013492..1013878) Rickettsia massiliae MTU5 5665781 YP_001499608.1 CDS rpsM NC_009900.1 1013900 1014277 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(1013900..1014277) Rickettsia massiliae MTU5 5665782 YP_001499609.1 CDS adk NC_009900.1 1014338 1014979 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(1014338..1014979) Rickettsia massiliae MTU5 5665783 YP_001499610.1 CDS secY NC_009900.1 1014992 1016293 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(1014992..1016293) Rickettsia massiliae MTU5 5664901 YP_001499611.1 CDS rplO NC_009900.1 1016297 1016758 R late assembly protein; 50S ribosomal protein L15 complement(1016297..1016758) Rickettsia massiliae MTU5 5664902 YP_001499612.1 CDS rpmD NC_009900.1 1016772 1016963 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(1016772..1016963) Rickettsia massiliae MTU5 5664903 YP_001499613.1 CDS rpsE NC_009900.1 1016987 1017541 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(1016987..1017541) Rickettsia massiliae MTU5 5665921 YP_001499614.1 CDS rplR NC_009900.1 1017535 1017894 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(1017535..1017894) Rickettsia massiliae MTU5 5665922 YP_001499615.1 CDS rplF NC_009900.1 1017910 1018443 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(1017910..1018443) Rickettsia massiliae MTU5 5665923 YP_001499616.1 CDS rpsH NC_009900.1 1018453 1018851 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(1018453..1018851) Rickettsia massiliae MTU5 5666228 YP_001499617.1 CDS rpsN NC_009900.1 1018871 1019194 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(1018871..1019194) Rickettsia massiliae MTU5 5666229 YP_001499618.1 CDS rplE NC_009900.1 1019194 1019736 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(1019194..1019736) Rickettsia massiliae MTU5 5666230 YP_001499619.1 CDS rplX NC_009900.1 1019733 1020062 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(1019733..1020062) Rickettsia massiliae MTU5 5666026 YP_001499620.1 CDS rplN NC_009900.1 1020063 1020431 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(1020063..1020431) Rickettsia massiliae MTU5 5666027 YP_001499621.1 CDS rpsQ NC_009900.1 1020506 1020757 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(1020506..1020757) Rickettsia massiliae MTU5 5666028 YP_001499622.1 CDS rpmC NC_009900.1 1020741 1020956 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(1020741..1020956) Rickettsia massiliae MTU5 5664881 YP_001499623.1 CDS rplP NC_009900.1 1020949 1021374 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(1020949..1021374) Rickettsia massiliae MTU5 5664882 YP_001499624.1 CDS rpsC NC_009900.1 1021374 1022054 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(1021374..1022054) Rickettsia massiliae MTU5 5664883 YP_001499625.1 CDS rplV NC_009900.1 1022029 1022394 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(1022029..1022394) Rickettsia massiliae MTU5 5664898 YP_001499626.1 CDS rpsS NC_009900.1 1022397 1022681 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(1022397..1022681) Rickettsia massiliae MTU5 5664899 YP_001499627.1 CDS rplB NC_009900.1 1022700 1023521 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(1022700..1023521) Rickettsia massiliae MTU5 5664900 YP_001499628.1 CDS rplW NC_009900.1 1023522 1023869 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(1023522..1023869) Rickettsia massiliae MTU5 5664944 YP_001499629.1 CDS rplD NC_009900.1 1023815 1024444 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(1023815..1024444) Rickettsia massiliae MTU5 5664945 YP_001499630.1 CDS rplC NC_009900.1 1024551 1025198 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(1024551..1025198) Rickettsia massiliae MTU5 5664946 YP_001499631.1 CDS rpsJ NC_009900.1 1025199 1025516 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(1025199..1025516) Rickettsia massiliae MTU5 5664972 YP_001499632.1 CDS tuf NC_009900.1 1025763 1026965 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(1025763..1026965) Rickettsia massiliae MTU5 5664973 YP_001499633.1 CDS RMA_1043 NC_009900.1 1027514 1028284 D tRNA/rRNA methyltransferase 1027514..1028284 Rickettsia massiliae MTU5 5666185 YP_001499634.1 CDS RMA_1044 NC_009900.1 1028386 1028838 D hypothetical protein 1028386..1028838 Rickettsia massiliae MTU5 5664989 YP_001499635.1 CDS fumC NC_009900.1 1028835 1030226 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1028835..1030226 Rickettsia massiliae MTU5 5664990 YP_001499636.1 CDS RMA_1046 NC_009900.1 1030295 1030576 D antitoxin of toxin-antitoxin 1030295..1030576 Rickettsia massiliae MTU5 5664991 YP_001499637.1 CDS RMA_1047 NC_009900.1 1030570 1030998 D toxin of toxin-antitoxin 1030570..1030998 Rickettsia massiliae MTU5 5665032 YP_001499638.1 CDS ftsZ NC_009900.1 1031237 1032598 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1031237..1032598 Rickettsia massiliae MTU5 5665033 YP_001499639.1 CDS RMA_1051 NC_009900.1 1034151 1034726 R NifU-like protein complement(1034151..1034726) Rickettsia massiliae MTU5 5665159 YP_001499640.1 CDS ampG2 NC_009900.1 1035164 1036411 R AmpG protein complement(1035164..1036411) Rickettsia massiliae MTU5 5665160 YP_001499641.1 CDS rhlE NC_009900.1 1036584 1037831 R ATP-dependent RNA helicase RhlE complement(1036584..1037831) Rickettsia massiliae MTU5 5665213 YP_001499642.1 CDS cspA NC_009900.1 1038334 1038576 R cold shock-like protein complement(1038334..1038576) Rickettsia massiliae MTU5 5665214 YP_001499643.1 CDS RMA_1055 NC_009900.1 1038659 1038790 D hypothetical protein 1038659..1038790 Rickettsia massiliae MTU5 5665215 YP_001499644.1 CDS ksgA NC_009900.1 1039981 1040979 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(1039981..1040979) Rickettsia massiliae MTU5 5666197 YP_001499645.1 CDS RMA_1057 NC_009900.1 1041049 1041960 R hypothetical protein complement(1041049..1041960) Rickettsia massiliae MTU5 5665250 YP_001499646.1 CDS ostA NC_009900.1 1042092 1044233 R organic solvent tolerance protein-like protein complement(1042092..1044233) Rickettsia massiliae MTU5 5665251 YP_001499647.1 CDS xseA NC_009900.1 1044460 1045836 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1044460..1045836 Rickettsia massiliae MTU5 5665305 YP_001499648.1 CDS RMA_1060 NC_009900.1 1045996 1046373 D hypothetical protein 1045996..1046373 Rickettsia massiliae MTU5 5665306 YP_001499649.1 CDS xth2 NC_009900.1 1047212 1048018 D exodeoxyribonuclease III 1047212..1048018 Rickettsia massiliae MTU5 5665328 YP_001499650.1 CDS engA NC_009900.1 1048375 1049826 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1048375..1049826 Rickettsia massiliae MTU5 5665329 YP_001499651.1 CDS ubiB NC_009900.1 1052653 1054089 R 2-polyprenylphenol 6-hydroxylase complement(1052653..1054089) Rickettsia massiliae MTU5 5665396 YP_001499652.1 CDS ubiE NC_009900.1 1054237 1054983 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(1054237..1054983) Rickettsia massiliae MTU5 5665397 YP_001499653.1 CDS mutM NC_009900.1 1055012 1055851 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 1055012..1055851 Rickettsia massiliae MTU5 5665398 YP_001499654.1 CDS RMA_1074 NC_009900.1 1057194 1057637 R transposase complement(1057194..1057637) Rickettsia massiliae MTU5 5665511 YP_001499655.1 CDS RMA_1076 NC_009900.1 1058684 1060114 R Poly-beta-hydroxyalkanoate depolymerase complement(1058684..1060114) Rickettsia massiliae MTU5 5665513 YP_001499656.1 CDS tatD NC_009900.1 1061312 1062283 R putative deoxyribonuclease TatD complement(1061312..1062283) Rickettsia massiliae MTU5 5665568 YP_001499657.1 CDS metG NC_009900.1 1062336 1063862 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(1062336..1063862) Rickettsia massiliae MTU5 5665569 YP_001499658.1 CDS tmk NC_009900.1 1063859 1064470 R catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase complement(1063859..1064470) Rickettsia massiliae MTU5 5665570 YP_001499659.1 CDS proP4 NC_009900.1 1064729 1066093 D proline/betaine transporter 1064729..1066093 Rickettsia massiliae MTU5 5665634 YP_001499660.1 CDS ubiA NC_009900.1 1066253 1067143 R UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; 4-hydroxybenzoate polyprenyltransferase complement(1066253..1067143) Rickettsia massiliae MTU5 5665635 YP_001499661.1 CDS valS NC_009900.1 1068146 1070671 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1068146..1070671 Rickettsia massiliae MTU5 5665622 YP_001499662.1 CDS RMA_1088 NC_009900.1 1070640 1071392 D LPS biosynthesis protein 1070640..1071392 Rickettsia massiliae MTU5 5665623 YP_001499663.1 CDS RMA_1089 NC_009900.1 1071445 1072278 D LPS biosynthesis protein 1071445..1072278 Rickettsia massiliae MTU5 5665606 YP_001499664.1 CDS RMA_1093 NC_009900.1 1074013 1075311 D RmuC family protein 1074013..1075311 Rickettsia massiliae MTU5 5665644 YP_001499665.1 CDS RMA_1102 NC_009900.1 1079240 1080067 D putative oxidoreductase protein 1079240..1080067 Rickettsia massiliae MTU5 5665776 YP_001499666.1 CDS clpX NC_009900.1 1080850 1082127 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(1080850..1082127) Rickettsia massiliae MTU5 5665795 YP_001499667.1 CDS rimJ NC_009900.1 1082164 1082715 R ribosomal-protein-alanine acetyltransferase complement(1082164..1082715) Rickettsia massiliae MTU5 5665796 YP_001499668.1 CDS exsB NC_009900.1 1082881 1083597 R trans-regulatory protein ExsB complement(1082881..1083597) Rickettsia massiliae MTU5 5665797 YP_001499669.1 CDS RMA_1107 NC_009900.1 1083564 1083899 R HicB-like protein complement(1083564..1083899) Rickettsia massiliae MTU5 5665845 YP_001499670.1 CDS msbA2 NC_009900.1 1084479 1086209 D multidrug resistance protein 1084479..1086209 Rickettsia massiliae MTU5 5666198 YP_001499671.1 CDS RMA_1109 NC_009900.1 1086473 1086772 D hypothetical protein 1086473..1086772 Rickettsia massiliae MTU5 5665847 YP_001499672.1 CDS bcr2 NC_009900.1 1087441 1088616 D MFS-type bicyclomycin resistance protein 1087441..1088616 Rickettsia massiliae MTU5 5665897 YP_001499673.1 CDS RMA_1111 NC_009900.1 1088690 1090045 D lipoprotein releasing system, transmembrane protein, LolC/E family protein 1088690..1090045 Rickettsia massiliae MTU5 5665898 YP_001499674.1 CDS lolD NC_009900.1 1090038 1090703 D lipoprotein releasing system ATP-binding protein LolD 1090038..1090703 Rickettsia massiliae MTU5 5665899 YP_001499675.1 CDS RMA_1113 NC_009900.1 1090915 1092813 D hypothetical protein 1090915..1092813 Rickettsia massiliae MTU5 5665973 YP_001499676.1 CDS RMA_1114 NC_009900.1 1092888 1094162 D hemolysin-like protein 1092888..1094162 Rickettsia massiliae MTU5 5665974 YP_001499677.1 CDS ccmF NC_009900.1 1094155 1096146 D cytochrome c-type biogenesis protein ccmF 1094155..1096146 Rickettsia massiliae MTU5 5665975 YP_001499678.1 CDS ompB NC_009900.1 1098578 1103545 R outer membrane protein OmpB complement(1098578..1103545) Rickettsia massiliae MTU5 5666066 YP_001499679.1 CDS spoT11 NC_009900.1 1103850 1104455 R guanosine polyphosphate pyrophosphohydrolase/synthetase complement(1103850..1104455) Rickettsia massiliae MTU5 5666081 YP_001499680.1 CDS RMA_1120 NC_009900.1 1104524 1104967 R transposase complement(1104524..1104967) Rickettsia massiliae MTU5 5666082 YP_001499681.1 CDS RMA_1121 NC_009900.1 1105441 1106424 R Beta-glucosidase complement(1105441..1106424) Rickettsia massiliae MTU5 5666083 YP_001499682.1 CDS RMA_1122 NC_009900.1 1106428 1106814 R hypothetical protein complement(1106428..1106814) Rickettsia massiliae MTU5 5666098 YP_001499683.1 CDS himA NC_009900.1 1106947 1107306 R integration host factor alpha-subunit complement(1106947..1107306) Rickettsia massiliae MTU5 5666099 YP_001499684.1 CDS bcp NC_009900.1 1107819 1108331 D bacterioferritin comigratory protein 1107819..1108331 Rickettsia massiliae MTU5 5666100 YP_001499685.1 CDS htrB NC_009900.1 1108442 1109314 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(1108442..1109314) Rickettsia massiliae MTU5 5666118 YP_001499686.1 CDS lpxK NC_009900.1 1109277 1110254 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(1109277..1110254) Rickettsia massiliae MTU5 5666119 YP_001499687.1 CDS RMA_1127 NC_009900.1 1110258 1111133 R hypothetical protein complement(1110258..1111133) Rickettsia massiliae MTU5 5666120 YP_001499688.1 CDS ligA NC_009900.1 1112005 1114074 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(1112005..1114074) Rickettsia massiliae MTU5 5665824 YP_001499689.1 CDS tgt NC_009900.1 1114360 1115445 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(1114360..1115445) Rickettsia massiliae MTU5 5665826 YP_001499690.1 CDS RMA_1139 NC_009900.1 1118228 1118578 D hypothetical protein 1118228..1118578 Rickettsia massiliae MTU5 5664872 YP_001499691.1 CDS RMA_1143 NC_009900.1 1119901 1120350 R ABC transporter substrate binding protein complement(1119901..1120350) Rickettsia massiliae MTU5 5665177 YP_001499692.1 CDS RMA_1144 NC_009900.1 1120375 1120674 R hypothetical protein complement(1120375..1120674) Rickettsia massiliae MTU5 5665178 YP_001499693.1 CDS rnhA NC_009900.1 1120662 1121129 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(1120662..1121129) Rickettsia massiliae MTU5 5665179 YP_001499694.1 CDS RMA_1146 NC_009900.1 1121129 1121641 R hypothetical protein complement(1121129..1121641) Rickettsia massiliae MTU5 5665930 YP_001499695.1 CDS RMA_1147 NC_009900.1 1122366 1123193 D hypothetical protein 1122366..1123193 Rickettsia massiliae MTU5 5666193 YP_001499696.1 CDS coaE NC_009900.1 1123187 1123762 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 1123187..1123762 Rickettsia massiliae MTU5 5665932 YP_001499697.1 CDS dnaQ NC_009900.1 1123750 1124439 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 1123750..1124439 Rickettsia massiliae MTU5 5665863 YP_001499698.1 CDS surf1 NC_009900.1 1124544 1125302 D Surfeit locus protein 1 1124544..1125302 Rickettsia massiliae MTU5 5665864 YP_001499699.1 CDS RMA_1151 NC_009900.1 1125358 1127826 D ATP-dependent helicase 1125358..1127826 Rickettsia massiliae MTU5 5665865 YP_001499700.1 CDS fabD NC_009900.1 1128593 1129549 D malonyl CoA-acyl carrier protein transacylase 1128593..1129549 Rickettsia massiliae MTU5 5664999 YP_001499701.1 CDS phbC NC_009900.1 1135438 1136502 R Poly-beta-hydroxybutyrate polymerase complement(1135438..1136502) Rickettsia massiliae MTU5 5664926 YP_001499702.1 CDS tlc5 NC_009900.1 1136698 1138200 D ATP/ADP translocase 1136698..1138200 Rickettsia massiliae MTU5 5664927 YP_001499703.1 CDS RMA_1167 NC_009900.1 1138725 1139156 R (di)nucleoside polyphosphate hydrolase-like protein complement(1138725..1139156) Rickettsia massiliae MTU5 5665161 YP_001499704.1 CDS tlyC NC_009900.1 1139725 1140636 R hemolysin C complement(1139725..1140636) Rickettsia massiliae MTU5 5665162 YP_001499705.1 CDS RMA_1169 NC_009900.1 1140641 1141174 R putative metalloprotease complement(1140641..1141174) Rickettsia massiliae MTU5 5665163 YP_001499706.1 CDS RMA_1170 NC_009900.1 1141171 1141374 R PemK-like growth inhibitor complement(1141171..1141374) Rickettsia massiliae MTU5 5665155 YP_001499707.1 CDS lipA NC_009900.1 1141829 1142719 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(1141829..1142719) Rickettsia massiliae MTU5 5665156 YP_001499708.1 CDS glyA NC_009900.1 1142712 1143974 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(1142712..1143974) Rickettsia massiliae MTU5 5665157 YP_001499709.1 CDS RMA_1173 NC_009900.1 1144091 1144741 R Serine esterase complement(1144091..1144741) Rickettsia massiliae MTU5 5665085 YP_001499710.1 CDS grxC2 NC_009900.1 1144901 1145383 R glutaredoxin-like protein grla complement(1144901..1145383) Rickettsia massiliae MTU5 5665086 YP_001499711.1 CDS nth NC_009900.1 1145274 1145906 D endonuclease III 1145274..1145906 Rickettsia massiliae MTU5 5665087 YP_001499712.1 CDS RMA_1177 NC_009900.1 1146979 1147350 R hypothetical protein complement(1146979..1147350) Rickettsia massiliae MTU5 5665340 YP_001499713.1 CDS RMA_1178 NC_009900.1 1147500 1147712 D hypothetical protein 1147500..1147712 Rickettsia massiliae MTU5 5665341 YP_001499714.1 CDS RMA_1181 NC_009900.1 1148370 1148603 R hypothetical protein complement(1148370..1148603) Rickettsia massiliae MTU5 5665245 YP_001499715.1 CDS RMA_1182 NC_009900.1 1148747 1149592 R putative methyltransferase complement(1148747..1149592) Rickettsia massiliae MTU5 5665417 YP_001499716.1 CDS RMA_1183 NC_009900.1 1149581 1150735 D ABC transporter substrate-binding protein 1149581..1150735 Rickettsia massiliae MTU5 5665418 YP_001499717.1 CDS tatA NC_009900.1 1150896 1151060 R TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A complement(1150896..1151060) Rickettsia massiliae MTU5 5665419 YP_001499718.1 CDS pgpA NC_009900.1 1151123 1151734 D phosphatidylglycerophosphatase A 1151123..1151734 Rickettsia massiliae MTU5 5665132 YP_001499719.1 CDS rplU NC_009900.1 1151802 1152140 D 50S ribosomal protein L21 1151802..1152140 Rickettsia massiliae MTU5 5665133 YP_001499720.1 CDS rpmA NC_009900.1 1152165 1152428 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1152165..1152428 Rickettsia massiliae MTU5 5665134 YP_001499721.1 CDS lysC NC_009900.1 1152690 1153919 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1152690..1153919 Rickettsia massiliae MTU5 5665440 YP_001499722.1 CDS RMA_1189 NC_009900.1 1154185 1154697 D hypothetical protein 1154185..1154697 Rickettsia massiliae MTU5 5665441 YP_001499723.1 CDS RMA_1190 NC_009900.1 1155183 1155818 D beta-lactamase 1155183..1155818 Rickettsia massiliae MTU5 5665442 YP_001499724.1 CDS proP5 NC_009900.1 1156680 1158017 R proline/betaine transporter complement(1156680..1158017) Rickettsia massiliae MTU5 5665558 YP_001499725.1 CDS RMA_1193 NC_009900.1 1158147 1158269 R hypothetical protein complement(1158147..1158269) Rickettsia massiliae MTU5 5665559 YP_001499726.1 CDS RMA_1194 NC_009900.1 1158247 1158570 R hypothetical protein complement(1158247..1158570) Rickettsia massiliae MTU5 5665426 YP_001499727.1 CDS RMA_1195 NC_009900.1 1158567 1158914 R hypothetical protein complement(1158567..1158914) Rickettsia massiliae MTU5 5665427 YP_001499728.1 CDS RMA_1196 NC_009900.1 1158921 1159262 R hypothetical protein complement(1158921..1159262) Rickettsia massiliae MTU5 5665428 YP_001499729.1 CDS RMA_1197 NC_009900.1 1159263 1164071 R NAD-specific glutamate dehydrogenase complement(1159263..1164071) Rickettsia massiliae MTU5 5665894 YP_001499730.1 CDS trmE NC_009900.1 1164099 1165436 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1164099..1165436 Rickettsia massiliae MTU5 5665895 YP_001499731.1 CDS RMA_1199 NC_009900.1 1165846 1167147 D hypothetical protein 1165846..1167147 Rickettsia massiliae MTU5 5665896 YP_001499732.1 CDS RMA_1200 NC_009900.1 1167965 1168441 R hypothetical protein complement(1167965..1168441) Rickettsia massiliae MTU5 5665231 YP_001499733.1 CDS recA NC_009900.1 1169631 1170662 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1169631..1170662 Rickettsia massiliae MTU5 5665959 YP_001499734.1 CDS fabG NC_009900.1 1170631 1171380 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1170631..1171380 Rickettsia massiliae MTU5 5665960 YP_001499735.1 CDS acpP NC_009900.1 1171545 1171805 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1171545..1171805 Rickettsia massiliae MTU5 5665961 YP_001499736.1 CDS fabF NC_009900.1 1171841 1173115 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1171841..1173115 Rickettsia massiliae MTU5 5664960 YP_001499737.1 CDS uup NC_009900.1 1173398 1175179 D ABC transporter ATP-binding protein 1173398..1175179 Rickettsia massiliae MTU5 5664961 YP_001499738.1 CDS RMA_1208 NC_009900.1 1175260 1176330 D hypothetical protein 1175260..1176330 Rickettsia massiliae MTU5 5664962 YP_001499739.1 CDS RMA_1209 NC_009900.1 1176594 1177748 R ATPase complement(1176594..1177748) Rickettsia massiliae MTU5 5665979 YP_001499740.1 CDS gmk NC_009900.1 1177818 1178537 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(1177818..1178537) Rickettsia massiliae MTU5 5665980 YP_001499741.1 CDS RMA_1211 NC_009900.1 1178644 1178955 R hypothetical protein complement(1178644..1178955) Rickettsia massiliae MTU5 5665981 YP_001499742.1 CDS mreC NC_009900.1 1179275 1180114 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(1179275..1180114) Rickettsia massiliae MTU5 5665945 YP_001499743.1 CDS mreB NC_009900.1 1180117 1181157 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(1180117..1181157) Rickettsia massiliae MTU5 5665946 YP_001499744.1 CDS RMA_1214 NC_009900.1 1181368 1182480 R putative permease complement(1181368..1182480) Rickettsia massiliae MTU5 5665947 YP_001499745.1 CDS pal NC_009900.1 1182886 1183380 R peptidoglycan-associated lipoprotein complement(1182886..1183380) Rickettsia massiliae MTU5 5665058 YP_001499746.1 CDS fabH NC_009900.1 1183846 1184799 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(1183846..1184799) Rickettsia massiliae MTU5 5665983 YP_001499747.1 CDS rpmF NC_009900.1 1184807 1185040 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(1184807..1185040) Rickettsia massiliae MTU5 5665984 YP_001499748.1 CDS smpA NC_009900.1 1185094 1185576 D tmRNA-binding protein 1185094..1185576 Rickettsia massiliae MTU5 5665988 YP_001499749.1 CDS ftsY NC_009900.1 1185731 1186642 D Signal recognition particle-docking protein FtsY 1185731..1186642 Rickettsia massiliae MTU5 5665989 YP_001499750.1 CDS polA NC_009900.1 1186805 1189432 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 1186805..1189432 Rickettsia massiliae MTU5 5665990 YP_001499751.1 CDS dnaE NC_009900.1 1193005 1196550 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(1193005..1196550) Rickettsia massiliae MTU5 5666116 YP_001499752.1 CDS udg NC_009900.1 1196715 1198022 R UDP-glucose 6-dehydrogenase complement(1196715..1198022) Rickettsia massiliae MTU5 5666117 YP_001499753.1 CDS RMA_1230 NC_009900.1 1198205 1200781 D hypothetical protein 1198205..1200781 Rickettsia massiliae MTU5 5665047 YP_001499754.1 CDS ampG3 NC_009900.1 1200739 1202457 D AmpG protein 1200739..1202457 Rickettsia massiliae MTU5 5665048 YP_001499755.1 CDS tatC NC_009900.1 1202524 1203285 D Sec-independent protein translocase protein TatC 1202524..1203285 Rickettsia massiliae MTU5 5665049 YP_001499756.1 CDS serS NC_009900.1 1203263 1204540 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1203263..1204540 Rickettsia massiliae MTU5 5666173 YP_001499757.1 CDS virB4-2 NC_009900.1 1204883 1207315 D VirB4 1204883..1207315 Rickettsia massiliae MTU5 5666174 YP_001499758.1 CDS RMA_1235 NC_009900.1 1207448 1210957 D hypothetical protein 1207448..1210957 Rickettsia massiliae MTU5 5666175 YP_001499759.1 CDS terC NC_009900.1 1210962 1211867 D tellurium resistance protein TerC 1210962..1211867 Rickettsia massiliae MTU5 5666095 YP_001499760.1 CDS RMA_1237 NC_009900.1 1211905 1212624 D hypothetical protein 1211905..1212624 Rickettsia massiliae MTU5 5666096 YP_001499761.1 CDS RMA_1238 NC_009900.1 1212718 1214382 D putative methyltransferase 1212718..1214382 Rickettsia massiliae MTU5 5666097 YP_001499762.1 CDS nuoJ NC_009900.1 1215169 1215795 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 1215169..1215795 Rickettsia massiliae MTU5 5665280 YP_001499763.1 CDS nuoK NC_009900.1 1215764 1216102 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 1215764..1216102 Rickettsia massiliae MTU5 5666179 YP_001499764.1 CDS nuoL1 NC_009900.1 1216099 1218075 D Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 1216099..1218075 Rickettsia massiliae MTU5 5666180 YP_001499765.1 CDS nuoM NC_009900.1 1218228 1219709 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 1218228..1219709 Rickettsia massiliae MTU5 5666181 YP_001499766.1 CDS ccmA NC_009900.1 1220082 1220702 D ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 1220082..1220702 Rickettsia massiliae MTU5 5666101 YP_001499767.1 CDS nuoI NC_009900.1 1221292 1221780 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(1221292..1221780) Rickettsia massiliae MTU5 5666102 YP_001499768.1 CDS nuoH NC_009900.1 1221960 1222982 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(1221960..1222982) Rickettsia massiliae MTU5 5666103 YP_001499769.1 CDS nuoG NC_009900.1 1223102 1225177 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G complement(1223102..1225177) Rickettsia massiliae MTU5 5666005 YP_001499770.1 CDS RMA_1249 NC_009900.1 1225123 1225479 R hypothetical protein complement(1225123..1225479) Rickettsia massiliae MTU5 5666006 YP_001499771.1 CDS acnA NC_009900.1 1225648 1228284 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(1225648..1228284) Rickettsia massiliae MTU5 5666007 YP_001499772.1 CDS atpC NC_009900.1 1228487 1228819 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(1228487..1228819) Rickettsia massiliae MTU5 5664978 YP_001499773.1 CDS atpD NC_009900.1 1228859 1230358 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(1228859..1230358) Rickettsia massiliae MTU5 5664979 YP_001499774.1 CDS atpG NC_009900.1 1230456 1231433 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(1230456..1231433) Rickettsia massiliae MTU5 5664980 YP_001499775.1 CDS atpA NC_009900.1 1231560 1233161 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(1231560..1233161) Rickettsia massiliae MTU5 5665008 YP_001499776.1 CDS atpH NC_009900.1 1233256 1233819 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(1233256..1233819) Rickettsia massiliae MTU5 5665009 YP_001499777.1 CDS lpdA1 NC_009900.1 1233972 1235351 R Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(1233972..1235351) Rickettsia massiliae MTU5 5665010 YP_001499778.1 CDS mrcA NC_009900.1 1238217 1240589 R penicillin-binding protein 1A complement(1238217..1240589) Rickettsia massiliae MTU5 5665986 YP_001499779.1 CDS miaB NC_009900.1 1240582 1241934 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1240582..1241934) Rickettsia massiliae MTU5 5665987 YP_001499780.1 CDS RMA_1265 NC_009900.1 1243276 1244121 R hypothetical protein complement(1243276..1244121) Rickettsia massiliae MTU5 5665031 YP_001499781.1 CDS RMA_1266 NC_009900.1 1244348 1244860 R hypothetical protein complement(1244348..1244860) Rickettsia massiliae MTU5 5665035 YP_001499782.1 CDS kefB NC_009900.1 1244829 1246565 R glutathione-regulated potassium-efflux system protein KefB complement(1244829..1246565) Rickettsia massiliae MTU5 5665036 YP_001499783.1 CDS RMA_1268 NC_009900.1 1246553 1246906 R Iojap-related protein complement(1246553..1246906) Rickettsia massiliae MTU5 5665037 YP_001499784.1 CDS bolA2 NC_009900.1 1247016 1247273 D BolA-like protein 1247016..1247273 Rickettsia massiliae MTU5 5665038 YP_001499785.1 CDS RMA_1270 NC_009900.1 1247578 1247901 R transposase complement(1247578..1247901) Rickettsia massiliae MTU5 5665039 YP_001499786.1 CDS infA NC_009900.1 1255835 1256056 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1255835..1256056 Rickettsia massiliae MTU5 5665059 YP_001499787.1 CDS maf NC_009900.1 1256062 1256715 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1256062..1256715 Rickettsia massiliae MTU5 5665196 YP_001499788.1 CDS dksA NC_009900.1 1256848 1257285 R DnaK suppressor-like protein complement(1256848..1257285) Rickettsia massiliae MTU5 5665197 YP_001499789.1 CDS xerC NC_009900.1 1257386 1258303 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(1257386..1258303) Rickettsia massiliae MTU5 5665198 YP_001499790.1 CDS pldA NC_009900.1 1259131 1259733 R phospholipase D superfamily protein PLD complement(1259131..1259733) Rickettsia massiliae MTU5 5665207 YP_001499791.1 CDS ubiD NC_009900.1 1261796 1263274 R UbiD family decarboxylase complement(1261796..1263274) Rickettsia massiliae MTU5 5665403 YP_001499792.1 CDS surA NC_009900.1 1263431 1265008 R parvulin-like peptidyl-prolyl isomerase complement(1263431..1265008) Rickettsia massiliae MTU5 5665404 YP_001499793.1 CDS ompA NC_009900.1 1265198 1271113 R outer membrane protein OmpA complement(1265198..1271113) Rickettsia massiliae MTU5 5665302 YP_001499794.1 CDS RMA_1297 NC_009900.1 1271335 1272144 R ankyrin repeat-containing protein complement(1271335..1272144) Rickettsia massiliae MTU5 5665303 YP_001499795.1 CDS ftsK NC_009900.1 1272706 1274952 R cell division protein FtsK complement(1272706..1274952) Rickettsia massiliae MTU5 5665304 YP_001499796.1 CDS map NC_009900.1 1276160 1276939 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 1276160..1276939 Rickettsia massiliae MTU5 5665414 YP_001499797.1 CDS mraY2 NC_009900.1 1277911 1278894 D undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase 1277911..1278894 Rickettsia massiliae MTU5 5665457 YP_001499798.1 CDS RMA_1306 NC_009900.1 1278792 1279214 D hypothetical protein 1278792..1279214 Rickettsia massiliae MTU5 5665458 YP_001499799.1 CDS RMA_1307 NC_009900.1 1279615 1280343 R hypothetical protein complement(1279615..1280343) Rickettsia massiliae MTU5 5665459 YP_001499800.1 CDS RMA_1308 NC_009900.1 1280590 1281273 R putative outer surface protein complement(1280590..1281273) Rickettsia massiliae MTU5 5665482 YP_001499801.1 CDS fdxA NC_009900.1 1281533 1281883 R ferredoxin complement(1281533..1281883) Rickettsia massiliae MTU5 5665483 YP_001499802.1 CDS ccmC NC_009900.1 1281888 1282580 R Heme exporter protein C complement(1281888..1282580) Rickettsia massiliae MTU5 5665484 YP_001499803.1 CDS RMA_1311 NC_009900.1 1282674 1283246 R cytosine deaminase complement(1282674..1283246) Rickettsia massiliae MTU5 5665493 YP_001499804.1 CDS RMA_1312 NC_009900.1 1283221 1284141 R cation diffusion facilitator family transporter complement(1283221..1284141) Rickettsia massiliae MTU5 5665494 YP_001499805.1 CDS omp NC_009900.1 1284328 1284807 D 17 kDa surface antigen 1284328..1284807 Rickettsia massiliae MTU5 5665495 YP_001499806.1 CDS RMA_1314 NC_009900.1 1284844 1285236 D phosphatidylethanolamine-binding protein PEBP 1284844..1285236 Rickettsia massiliae MTU5 5665525 YP_001499807.1 CDS znuC NC_009900.1 1285416 1286117 D Zinc ABC transporter ATP-binding protein 1285416..1286117 Rickettsia massiliae MTU5 5665526 YP_001499808.1 CDS uvrA NC_009900.1 1289959 1292850 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(1289959..1292850) Rickettsia massiliae MTU5 5665587 YP_001499809.1 CDS ssb NC_009900.1 1292930 1293388 D binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 1292930..1293388 Rickettsia massiliae MTU5 5665574 YP_001499810.1 CDS RMA_1321 NC_009900.1 1293388 1294224 D DAP2 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein 1293388..1294224 Rickettsia massiliae MTU5 5665575 YP_001499811.1 CDS RMA_1323 NC_009900.1 1294893 1295468 R hypothetical protein complement(1294893..1295468) Rickettsia massiliae MTU5 5665615 YP_001499812.1 CDS RMA_1324 NC_009900.1 1295908 1296231 D hypothetical protein 1295908..1296231 Rickettsia massiliae MTU5 5665411 YP_001499813.1 CDS htpG NC_009900.1 1296369 1298240 D molecular chaperone; heat shock protein 90 1296369..1298240 Rickettsia massiliae MTU5 5665617 YP_001499814.1 CDS hemA NC_009900.1 1298371 1299672 D catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase 1298371..1299672 Rickettsia massiliae MTU5 5665601 YP_001499815.1 CDS tig NC_009900.1 1301327 1302673 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1301327..1302673 Rickettsia massiliae MTU5 5665603 YP_001499816.1 CDS obgE NC_009900.1 1302816 1303916 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(1302816..1303916) Rickettsia massiliae MTU5 5665640 YP_001499817.1 CDS gltA NC_009900.1 1303919 1305247 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(1303919..1305247) Rickettsia massiliae MTU5 5665641 YP_001499818.1 CDS RMA_1331 NC_009900.1 1305346 1305576 R transcriptional regulator complement(1305346..1305576) Rickettsia massiliae MTU5 5665642 YP_001499819.1 CDS RMA_1332 NC_009900.1 1305882 1306766 R uracil-DNA glycosylase complement(1305882..1306766) Rickettsia massiliae MTU5 5665706 YP_001499820.1 CDS RMA_1333 NC_009900.1 1306685 1307626 D ribosomal large subunit pseudouridine synthases RluD subfamily protein 1306685..1307626 Rickettsia massiliae MTU5 5665707 YP_001499821.1 CDS hemK NC_009900.1 1309435 1310970 D fusion of hemK/trmB; N-terminal HemK domain transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; C-terminal; bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase 1309435..1310970 Rickettsia massiliae MTU5 5665708 YP_001499822.1 CDS RMA_1335 NC_009900.1 1310936 1311874 R Sua5/YciO/YrdC/YwlC family translation factor protein complement(1310936..1311874) Rickettsia massiliae MTU5 5665698 YP_001499823.1 CDS glyS NC_009900.1 1311871 1313898 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(1311871..1313898) Rickettsia massiliae MTU5 5665699 YP_001499824.1 CDS glyQ NC_009900.1 1313865 1314731 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(1313865..1314731) Rickettsia massiliae MTU5 5665700 YP_001499825.1 CDS vapC3 NC_009900.1 1314763 1315173 R toxin of toxin-antitoxin complement(1314763..1315173) Rickettsia massiliae MTU5 5665723 YP_001499826.1 CDS RMA_1339 NC_009900.1 1315167 1315403 R putative antitoxin of toxin-antitoxin complement(1315167..1315403) Rickettsia massiliae MTU5 5665724 YP_001499827.1 CDS RMA_1340 NC_009900.1 1315493 1316128 R hypothetical protein complement(1315493..1316128) Rickettsia massiliae MTU5 5665725 YP_001499828.1 CDS RMA_1344 NC_009900.1 1319199 1319381 D hypothetical protein 1319199..1319381 Rickettsia massiliae MTU5 5665753 YP_001499829.1 CDS mutL NC_009900.1 1319366 1321213 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1319366..1321213 Rickettsia massiliae MTU5 5665754 YP_001499830.1 CDS rpmG NC_009900.1 1321434 1321604 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1321434..1321604 Rickettsia massiliae MTU5 5665755 YP_001499831.1 CDS rpsP NC_009900.1 1321618 1321953 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1321618..1321953 Rickettsia massiliae MTU5 5665842 YP_001499832.1 CDS ampD2 NC_009900.1 1322393 1323142 D negative regulator of beta-lactamase expression 1322393..1323142 Rickettsia massiliae MTU5 5665534 YP_001499833.1 CDS lipB NC_009900.1 1323133 1323768 D lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 1323133..1323768 Rickettsia massiliae MTU5 5665844 YP_001499834.1 CDS RMA_1350 NC_009900.1 1323765 1324280 D hypothetical protein 1323765..1324280 Rickettsia massiliae MTU5 5665909 YP_001499835.1 CDS nhaA NC_009900.1 1324290 1325510 R Na+/H+ antiporter NhaA complement(1324290..1325510) Rickettsia massiliae MTU5 5665910 YP_001499836.1 CDS dapE NC_009900.1 1328223 1329371 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 1328223..1329371 Rickettsia massiliae MTU5 5666016 YP_001499837.1 CDS holC NC_009900.1 1329524 1329994 D binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 1329524..1329994 Rickettsia massiliae MTU5 5665360 YP_001499838.1 CDS RMA_1360 NC_009900.1 1330000 1331112 R putative permease complement(1330000..1331112) Rickettsia massiliae MTU5 5666003 YP_001499839.1 CDS RMA_1361 NC_009900.1 1331221 1331376 R hypothetical protein complement(1331221..1331376) Rickettsia massiliae MTU5 5666004 YP_001499840.1 CDS dinJ NC_009900.1 1331476 1331745 R DNA-damage-inducible protein J complement(1331476..1331745) Rickettsia massiliae MTU5 5666131 YP_001499841.1 CDS RMA_1363 NC_009900.1 1331832 1332491 R hypothetical protein complement(1331832..1332491) Rickettsia massiliae MTU5 5666132 YP_001499842.1 CDS phnP NC_009900.1 1332488 1333258 D beta-lactamase superfamily hydrolase 1332488..1333258 Rickettsia massiliae MTU5 5666133 YP_001499843.1 CDS glnQ NC_009900.1 1333262 1333984 D glutamine ABC transporter ATP-binding protein 1333262..1333984 Rickettsia massiliae MTU5 5666089 YP_001499844.1 CDS RMA_1366 NC_009900.1 1334236 1334403 D antitoxin of toxin-antitoxin 1334236..1334403 Rickettsia massiliae MTU5 5666090 YP_001499845.1 CDS RMA_1368 NC_009900.1 1335505 1336245 D putative aspartyl protease 1335505..1336245 Rickettsia massiliae MTU5 5666150 YP_001499846.1 CDS RMA_1369 NC_009900.1 1336772 1337098 R hypothetical protein complement(1336772..1337098) Rickettsia massiliae MTU5 5666151 YP_001499847.1 CDS dnaX NC_009900.1 1337115 1338665 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; rhe tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(1337115..1338665) Rickettsia massiliae MTU5 5666152 YP_001499848.1 CDS lolA NC_009900.1 1338891 1339571 R Outer membrane lipoprotein-sorting protein LolA complement(1338891..1339571) Rickettsia massiliae MTU5 5665361 YP_001499849.1 CDS pntA1 NC_009900.1 1339605 1340729 D NAD(P) transhydrogenase subunit alpha 1339605..1340729 Rickettsia massiliae MTU5 5666160 YP_001499850.1 CDS pntA2 NC_009900.1 1340717 1341124 D NAD(P) transhydrogenase subunit alpha 1340717..1341124 Rickettsia massiliae MTU5 5666161 YP_001499851.1 CDS greA NC_009900.1 1341283 1341879 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(1341283..1341879) Rickettsia massiliae MTU5 5666176 YP_001499852.1 CDS sec59 NC_009900.1 1341913 1342539 D dolichol kinase 1341913..1342539 Rickettsia massiliae MTU5 5666177 YP_001499853.1 CDS dnaG NC_009900.1 1342478 1344331 D synthesizes RNA primers at the replication forks; DNA primase 1342478..1344331 Rickettsia massiliae MTU5 5666178 YP_001499854.1 CDS rpoD NC_009900.1 1344376 1346277 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 1344376..1346277 Rickettsia massiliae MTU5 5665316 YP_001499855.1 CDS truA NC_009900.1 1346373 1347113 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1346373..1347113 Rickettsia massiliae MTU5 5665317 YP_001499856.1 CDS alaS NC_009900.1 1347325 1349976 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1347325..1349976) Rickettsia massiliae MTU5 5665318 YP_001499857.1 CDS RMA_1380 NC_009900.1 1350155 1351729 D hypothetical protein 1350155..1351729 Rickettsia massiliae MTU5 5665451 YP_001499858.1 CDS RMA_1381 NC_009900.1 1351801 1352439 D hypothetical protein 1351801..1352439 Rickettsia massiliae MTU5 5665452 YP_001499859.1 CDS RMA_1382 NC_009900.1 1352440 1353399 D hypothetical protein 1352440..1353399 Rickettsia massiliae MTU5 5665453 YP_001499860.1 CDS proP7 NC_009900.1 1354294 1355565 D proline/betaine transporter 1354294..1355565 Rickettsia massiliae MTU5 5665943 YP_001499861.1 CDS hemF NC_009900.1 1355543 1356388 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 1355543..1356388 Rickettsia massiliae MTU5 5665944 YP_001499862.1 CDS RMA_1387 NC_009900.1 1358018 1358467 R hypothetical protein complement(1358018..1358467) Rickettsia massiliae MTU5 5665379 YP_001499863.1 CDS hemH NC_009900.1 1358467 1359507 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(1358467..1359507) Rickettsia massiliae MTU5 5665380 YP_001499864.1 CDS hemE NC_009900.1 1359464 1360549 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(1359464..1360549) Rickettsia massiliae MTU5 5665657 RMA_RNA01 tRNA RMA_RNA01 NC_009900.1 12029 12104 R tRNA-Phe complement(12029..12104) Rickettsia massiliae MTU5 5665658 RMA_RNA02 tRNA RMA_RNA02 NC_009900.1 24029 24103 D tRNA-Glu 24029..24103 Rickettsia massiliae MTU5 5665866 RMA_RNA03 tRNA RMA_RNA03 NC_009900.1 108112 108186 D tRNA-Thr 108112..108186 Rickettsia massiliae MTU5 5665011 RMA_RNA04 tRNA RMA_RNA04 NC_009900.1 134478 134554 D tRNA-Met 134478..134554 Rickettsia massiliae MTU5 5665267 RMA_RNA05 tRNA RMA_RNA05 NC_009900.1 179192 179267 D tRNA-Trp 179192..179267 Rickettsia massiliae MTU5 5665703 RMA_RNA06 tRNA RMA_RNA06 NC_009900.1 214501 214576 R tRNA-Thr complement(214501..214576) Rickettsia massiliae MTU5 5665448 RMA_RNA09 tRNA RMA_RNA09 NC_009900.1 329314 329390 D tRNA-Met 329314..329390 Rickettsia massiliae MTU5 5665852 RMA_RNA10 tRNA RMA_RNA10 NC_009900.1 379146 379220 D tRNA-Asn 379146..379220 Rickettsia massiliae MTU5 5666254 RMA_RNA11 tRNA RMA_RNA11 NC_009900.1 501122 501196 D tRNA-Cys 501122..501196 Rickettsia massiliae MTU5 5665445 RMA_RNA12 tRNA RMA_RNA12 NC_009900.1 532713 532788 D tRNA-Lys 532713..532788 Rickettsia massiliae MTU5 5665014 RMA_RNA13 tRNA RMA_RNA13 NC_009900.1 532804 532880 D tRNA-Ile 532804..532880 Rickettsia massiliae MTU5 5664997 RMA_RNA14 tRNA RMA_RNA14 NC_009900.1 636348 636424 R tRNA-Asp complement(636348..636424) Rickettsia massiliae MTU5 5665393 RMA_RNA16 tRNA RMA_RNA16 NC_009900.1 762873 762949 R tRNA-Val complement(762873..762949) Rickettsia massiliae MTU5 5666223 RMA_RNA17 tRNA RMA_RNA17 NC_009900.1 767013 767088 D tRNA-Ala 767013..767088 Rickettsia massiliae MTU5 5666219 RMA_RNA18 tRNA RMA_RNA18 NC_009900.1 774213 774300 R tRNA-Ser complement(774213..774300) Rickettsia massiliae MTU5 5664986 RMA_RNA19 tRNA RMA_RNA19 NC_009900.1 796477 796566 R tRNA-Ser complement(796477..796566) Rickettsia massiliae MTU5 5665486 RMA_RNA20 tRNA RMA_RNA20 NC_009900.1 810810 810886 D tRNA-Arg 810810..810886 Rickettsia massiliae MTU5 5665174 RMA_RNA21 tRNA RMA_RNA21 NC_009900.1 810963 811037 R tRNA-Gln complement(810963..811037) Rickettsia massiliae MTU5 5665082 RMA_RNA22 tRNA RMA_RNA22 NC_009900.1 862660 862736 D tRNA-Arg 862660..862736 Rickettsia massiliae MTU5 5666024 RMA_RNA23 tRNA RMA_RNA23 NC_009900.1 904536 904610 R tRNA-Ala complement(904536..904610) Rickettsia massiliae MTU5 5665892 RMA_RNA24 tRNA RMA_RNA24 NC_009900.1 916704 916790 D tRNA-Leu 916704..916790 Rickettsia massiliae MTU5 5666258 RMA_RNA25 tRNA RMA_RNA25 NC_009900.1 921456 921530 D tRNA-Gly 921456..921530 Rickettsia massiliae MTU5 5666277 RMA_RNA27 tRNA RMA_RNA27 NC_009900.1 1011587 1011662 R tRNA-Val complement(1011587..1011662) Rickettsia massiliae MTU5 5665618 RMA_RNA28 tRNA RMA_RNA28 NC_009900.1 1027038 1027111 R tRNA-Gly complement(1027038..1027111) Rickettsia massiliae MTU5 5664974 RMA_RNA29 tRNA RMA_RNA29 NC_009900.1 1027282 1027367 R tRNA-Tyr complement(1027282..1027367) Rickettsia massiliae MTU5 5666207 RMA_RNA30 tRNA RMA_RNA30 NC_009900.1 1038937 1039022 D tRNA-Leu 1038937..1039022 Rickettsia massiliae MTU5 5665249 RMA_RNA31 tRNA RMA_RNA31 NC_009900.1 1084243 1084319 D tRNA-His 1084243..1084319 Rickettsia massiliae MTU5 5665846 RMA_RNA33 tRNA RMA_RNA33 NC_009900.1 1130411 1130502 D tRNA-Ser 1130411..1130502 Rickettsia massiliae MTU5 5665001 RMA_RNA34 tRNA RMA_RNA34 NC_009900.1 1182498 1182574 R tRNA-Met complement(1182498..1182574) Rickettsia massiliae MTU5 5665982 RMA_RNA35 tRNA RMA_RNA35 NC_009900.1 1255747 1255823 D tRNA-Pro 1255747..1255823 Rickettsia massiliae MTU5 5665143 RMA_RNA36 tRNA RMA_RNA36 NC_009900.1 1295741 1295817 R tRNA-Arg complement(1295741..1295817) Rickettsia massiliae MTU5 5665616 RMA_RNA37 tRNA RMA_RNA37 NC_009900.1 1322131 1322205 D tRNA-Thr 1322131..1322205 Rickettsia massiliae MTU5 5665843 RMA_RNA38 tRNA RMA_RNA38 NC_009900.1 1329409 1329493 D tRNA-Leu 1329409..1329493 Rickettsia massiliae MTU5 5666002 RMA_RNA07 rRNA rrl NC_009900.1 289553 292333 D 23S ribosomal RNA 289553..292333 Rickettsia massiliae MTU5 5665766 RMA_RNA08 rRNA rrf NC_009900.1 292583 292701 D 5S ribosomal RNA 292583..292701 Rickettsia massiliae MTU5 5665435 RMA_RNA26 rRNA rrs NC_009900.1 968391 969898 R 16S ribosomal RNA complement(968391..969898) Rickettsia massiliae MTU5 5665750