-- dump date 20140620_033907 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_001497185.1 157954007 5664847 106..2442 1 NC_009897.1 hypothetical protein 2442 5664847 RMA_p01 Rickettsia massiliae MTU5 hypothetical protein YP_001497185.1 106 D 416276 CDS YP_001497186.1 157954008 5664849 2693..2971 1 NC_009897.1 hypothetical protein 2971 5664849 RMA_p02 Rickettsia massiliae MTU5 hypothetical protein YP_001497186.1 2693 D 416276 CDS YP_001497187.1 157954009 5664852 complement(2994..4574) 1 NC_009897.1 leucine-rich repeat-containing protein 4574 5664852 RMA_p03 Rickettsia massiliae MTU5 leucine-rich repeat-containing protein YP_001497187.1 2994 R 416276 CDS YP_001497188.1 157954010 5664848 complement(4665..6200) 1 NC_009897.1 guanosine polyphosphate pyrophosphohydrolase/synthetase 6200 spoT22 5664848 spoT22 Rickettsia massiliae MTU5 guanosine polyphosphate pyrophosphohydrolase/synthetase YP_001497188.1 4665 R 416276 CDS YP_001497189.1 157954011 5664844 7464..8015 1 NC_009897.1 site-specific recombinase 8015 5664844 RMA_p05 Rickettsia massiliae MTU5 site-specific recombinase YP_001497189.1 7464 D 416276 CDS YP_001497190.1 157954012 5664845 complement(8200..9243) 1 NC_009897.1 transposase 9243 5664845 RMA_p06 Rickettsia massiliae MTU5 transposase YP_001497190.1 8200 R 416276 CDS YP_001497191.1 157954013 5664850 9242..9514 1 NC_009897.1 hypothetical protein 9514 5664850 RMA_p07 Rickettsia massiliae MTU5 hypothetical protein YP_001497191.1 9242 D 416276 CDS YP_001497192.1 157954014 5664851 10001..10312 1 NC_009897.1 TPR repeat-containing protein 10312 5664851 RMA_p08 Rickettsia massiliae MTU5 TPR repeat-containing protein YP_001497192.1 10001 D 416276 CDS YP_001497193.1 157954015 5664853 complement(10933..12009) 1 NC_009897.1 hypothetical protein 12009 5664853 RMA_p10 Rickettsia massiliae MTU5 hypothetical protein YP_001497193.1 10933 R 416276 CDS YP_001497194.1 157954016 5664843 complement(11942..12316) 1 NC_009897.1 hypothetical protein 12316 5664843 RMA_p11 Rickettsia massiliae MTU5 hypothetical protein YP_001497194.1 11942 R 416276 CDS YP_001497195.1 157954017 5664846 13299..13784 1 NC_009897.1 hypothetical protein 13784 5664846 RMA_p12 Rickettsia massiliae MTU5 hypothetical protein YP_001497195.1 13299 D 416276 CDS YP_001497196.1 157954018 5664854 complement(14197..14838) 1 NC_009897.1 plasmid stability protein ParA 14838 parA2 5664854 parA2 Rickettsia massiliae MTU5 plasmid stability protein ParA YP_001497196.1 14197 R 416276 CDS YP_001498897.1 157964073 5666189 1..822 1 NC_009900.1 hypothetical protein 822 5666189 RMA_0001 Rickettsia massiliae MTU5 hypothetical protein YP_001498897.1 1 D 416276 CDS YP_001498898.1 157964074 5664855 1134..1463 1 NC_009900.1 thioredoxin 1463 trxA 5664855 trxA Rickettsia massiliae MTU5 thioredoxin YP_001498898.1 1134 D 416276 CDS YP_001498899.1 157964075 5665879 1441..2223 1 NC_009900.1 O-antigen export system ATP-binding protein RfbE 2223 rfbE 5665879 rfbE Rickettsia massiliae MTU5 O-antigen export system ATP-binding protein RfbE YP_001498899.1 1441 D 416276 CDS YP_001498900.1 157964076 5665880 2224..3000 1 NC_009900.1 O-antigen export system permease protein RfbA 3000 rfbA 5665880 rfbA Rickettsia massiliae MTU5 O-antigen export system permease protein RfbA YP_001498900.1 2224 D 416276 CDS YP_001498901.1 157964077 5665881 2997..6035 1 NC_009900.1 similar to related oxidoreductases; undetermined function; putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase 6035 gltD 5665881 gltD Rickettsia massiliae MTU5 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase YP_001498901.1 2997 D 416276 CDS YP_001498902.1 157964078 5665680 complement(6502..7314) 1 NC_009900.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 7314 lpxA 5665680 lpxA Rickettsia massiliae MTU5 UDP-N-acetylglucosamine acyltransferase YP_001498902.1 6502 R 416276 CDS YP_001498903.1 157964079 5665681 complement(7321..7758) 1 NC_009900.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 7758 fabZ 5665681 fabZ Rickettsia massiliae MTU5 (3R)-hydroxymyristoyl-ACP dehydratase YP_001498903.1 7321 R 416276 CDS YP_001498904.1 157964080 5665682 complement(7942..8979) 1 NC_009900.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 8979 lpxD 5665682 lpxD Rickettsia massiliae MTU5 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_001498904.1 7942 R 416276 CDS YP_001498905.1 157964081 5665536 complement(14440..14973) 1 NC_009900.1 putative P-loop hydrolase 14973 5665536 RMA_0017 Rickettsia massiliae MTU5 putative P-loop hydrolase YP_001498905.1 14440 R 416276 CDS YP_001498906.1 157964082 5665537 complement(14961..15938) 1 NC_009900.1 Zinc/manganese ABC transporter substrate binding protein 15938 znuA 5665537 znuA Rickettsia massiliae MTU5 Zinc/manganese ABC transporter substrate binding protein YP_001498906.1 14961 R 416276 CDS YP_001498907.1 157964083 5665798 complement(15914..17170) 1 NC_009900.1 Poly(A) polymerase 17170 pcnB 5665798 pcnB Rickettsia massiliae MTU5 Poly(A) polymerase YP_001498907.1 15914 R 416276 CDS YP_001498908.1 157964084 5665799 18551..23920 1 NC_009900.1 cell surface antigen Sca1 23920 sca1 5665799 sca1 Rickettsia massiliae MTU5 cell surface antigen Sca1 YP_001498908.1 18551 D 416276 CDS YP_001498909.1 157964085 5665424 complement(27840..28349) 1 NC_009900.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 28349 atpF 5665424 atpF Rickettsia massiliae MTU5 F0F1 ATP synthase subunit B YP_001498909.1 27840 R 416276 CDS YP_001498910.1 157964086 5665667 complement(28346..28819) 1 NC_009900.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.; F0F1 ATP synthase subunit B' 28819 atpX 5665667 atpX Rickettsia massiliae MTU5 F0F1 ATP synthase subunit B' YP_001498910.1 28346 R 416276 CDS YP_001498911.1 157964087 5665668 complement(28838..29074) 1 NC_009900.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 29074 atpE 5665668 atpE Rickettsia massiliae MTU5 F0F1 ATP synthase subunit C YP_001498911.1 28838 R 416276 CDS YP_001498912.1 157964088 5665669 complement(29133..29879) 1 NC_009900.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 29879 atpB 5665669 atpB Rickettsia massiliae MTU5 F0F1 ATP synthase subunit A YP_001498912.1 29133 R 416276 CDS YP_001498913.1 157964089 5665566 complement(29866..30234) 1 NC_009900.1 hypothetical protein 30234 5665566 RMA_0029 Rickettsia massiliae MTU5 hypothetical protein YP_001498913.1 29866 R 416276 CDS YP_001498914.1 157964090 5665567 complement(30240..31088) 1 NC_009900.1 protein-disulfide isomerase 31088 dsbG 5665567 dsbG Rickettsia massiliae MTU5 protein-disulfide isomerase YP_001498914.1 30240 R 416276 CDS YP_001498915.1 157964091 5665226 31191..31778 1 NC_009900.1 transcriptional regulator 31778 5665226 RMA_0031 Rickettsia massiliae MTU5 transcriptional regulator YP_001498915.1 31191 D 416276 CDS YP_001498916.1 157964092 5665227 complement(32025..33644) 1 NC_009900.1 putative methyltransferase 33644 5665227 RMA_0032 Rickettsia massiliae MTU5 putative methyltransferase YP_001498916.1 32025 R 416276 CDS YP_001498917.1 157964093 5665228 complement(34061..35143) 1 NC_009900.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 35143 recF 5665228 recF Rickettsia massiliae MTU5 recombination protein F YP_001498917.1 34061 R 416276 CDS YP_001498918.1 157964094 5664909 complement(37989..38660) 1 NC_009900.1 hypothetical protein 38660 5664909 RMA_0043 Rickettsia massiliae MTU5 hypothetical protein YP_001498918.1 37989 R 416276 CDS YP_001498919.1 157964095 5665823 41691..42284 1 NC_009900.1 Sco2 protein precursor 42284 5665823 RMA_0048 Rickettsia massiliae MTU5 Sco2 protein precursor YP_001498919.1 41691 D 416276 CDS YP_001498920.1 157964096 5665121 complement(42295..42864) 1 NC_009900.1 hypothetical protein 42864 5665121 RMA_0049 Rickettsia massiliae MTU5 hypothetical protein YP_001498920.1 42295 R 416276 CDS YP_001498921.1 157964097 5665122 42929..43600 1 NC_009900.1 putative colicin V production membrane protein 43600 cvpA 5665122 cvpA Rickettsia massiliae MTU5 putative colicin V production membrane protein YP_001498921.1 42929 D 416276 CDS YP_001498922.1 157964098 5664957 complement(46959..48290) 1 NC_009900.1 hypothetical protein 48290 5664957 RMA_0056 Rickettsia massiliae MTU5 hypothetical protein YP_001498922.1 46959 R 416276 CDS YP_001498923.1 157964099 5664958 complement(48388..49059) 1 NC_009900.1 hypothetical protein 49059 5664958 RMA_0057 Rickettsia massiliae MTU5 hypothetical protein YP_001498923.1 48388 R 416276 CDS YP_001498924.1 157964100 5665719 53007..55589 1 NC_009900.1 chaperone ClpB 55589 clpB 5665719 clpB Rickettsia massiliae MTU5 chaperone ClpB YP_001498924.1 53007 D 416276 CDS YP_001498925.1 157964101 5665180 complement(55829..56368) 1 NC_009900.1 hypothetical protein 56368 5665180 RMA_0064 Rickettsia massiliae MTU5 hypothetical protein YP_001498925.1 55829 R 416276 CDS YP_001498926.1 157964102 5665181 complement(56448..57482) 1 NC_009900.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 57482 gcp 5665181 gcp Rickettsia massiliae MTU5 putative DNA-binding/iron metalloprotein/AP endonuclease YP_001498926.1 56448 R 416276 CDS YP_001498927.1 157964103 5665811 complement(57665..58858) 1 NC_009900.1 Acyl-CoA desaturase 1 58858 aco1 5665811 aco1 Rickettsia massiliae MTU5 Acyl-CoA desaturase 1 YP_001498927.1 57665 R 416276 CDS YP_001498928.1 157964104 5665813 59709..60146 1 NC_009900.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 60146 rpsF 5665813 rpsF Rickettsia massiliae MTU5 30S ribosomal protein S6 YP_001498928.1 59709 D 416276 CDS YP_001498929.1 157964105 5666073 60171..60458 1 NC_009900.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 60458 rpsR 5666073 rpsR Rickettsia massiliae MTU5 30S ribosomal protein S18 YP_001498929.1 60171 D 416276 CDS YP_001498930.1 157964106 5666074 60470..60985 1 NC_009900.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 60985 rplI 5666074 rplI Rickettsia massiliae MTU5 50S ribosomal protein L9 YP_001498930.1 60470 D 416276 CDS YP_001498931.1 157964107 5665588 61279..62712 1 NC_009900.1 tRNA(Ile)-lysidine synthetase 62712 tilS 5665588 tilS Rickettsia massiliae MTU5 tRNA(Ile)-lysidine synthetase YP_001498931.1 61279 D 416276 CDS YP_001498932.1 157964108 5665589 62810..64729 1 NC_009900.1 ATP-dependent metalloprotease FtsH 64729 ftsH 5665589 ftsH Rickettsia massiliae MTU5 ATP-dependent metalloprotease FtsH YP_001498932.1 62810 D 416276 CDS YP_001498933.1 157964109 5664880 66128..66913 1 NC_009900.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 66913 sdhB 5664880 sdhB Rickettsia massiliae MTU5 succinate dehydrogenase iron-sulfur subunit YP_001498933.1 66128 D 416276 CDS YP_001498934.1 157964110 5666157 complement(67259..68515) 1 NC_009900.1 hypothetical protein 68515 5666157 RMA_0077 Rickettsia massiliae MTU5 hypothetical protein YP_001498934.1 67259 R 416276 CDS YP_001498935.1 157964111 5666158 complement(68458..69252) 1 NC_009900.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 69252 lgt 5666158 lgt Rickettsia massiliae MTU5 prolipoprotein diacylglyceryl transferase YP_001498935.1 68458 R 416276 CDS YP_001498936.1 157964112 5665060 69482..70645 1 NC_009900.1 hypothetical protein 70645 5665060 RMA_0079 Rickettsia massiliae MTU5 hypothetical protein YP_001498936.1 69482 D 416276 CDS YP_001498937.1 157964113 5665061 70830..72512 1 NC_009900.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 72512 yidC 5665061 yidC Rickettsia massiliae MTU5 putative inner membrane protein translocase component YidC YP_001498937.1 70830 D 416276 CDS YP_001498938.1 157964114 5666143 72512..73057 1 NC_009900.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 73057 pgsA 5666143 pgsA Rickettsia massiliae MTU5 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001498938.1 72512 D 416276 CDS YP_001498939.1 157964115 5666144 73071..73631 1 NC_009900.1 hypothetical protein 73631 5666144 RMA_0082 Rickettsia massiliae MTU5 hypothetical protein YP_001498939.1 73071 D 416276 CDS YP_001498940.1 157964116 5666145 complement(73804..74223) 1 NC_009900.1 hypothetical protein 74223 5666145 RMA_0083 Rickettsia massiliae MTU5 hypothetical protein YP_001498940.1 73804 R 416276 CDS YP_001498941.1 157964117 5665803 74418..74849 1 NC_009900.1 tellurite resistance protein-like protein 74849 5665803 RMA_0084 Rickettsia massiliae MTU5 tellurite resistance protein-like protein YP_001498941.1 74418 D 416276 CDS YP_001498942.1 157964118 5666191 complement(76181..76879) 1 NC_009900.1 polypeptide deformylase 76879 def3 5666191 def3 Rickettsia massiliae MTU5 polypeptide deformylase YP_001498942.1 76181 R 416276 CDS YP_001498943.1 157964119 5666192 77058..78560 1 NC_009900.1 ATP/ADP translocase 78560 tlc1 5666192 tlc1 Rickettsia massiliae MTU5 ATP/ADP translocase YP_001498943.1 77058 D 416276 CDS YP_001498944.1 157964120 5664923 78564..79883 1 NC_009900.1 sugar phosphate permease 79883 uhpC 5664923 uhpC Rickettsia massiliae MTU5 sugar phosphate permease YP_001498944.1 78564 D 416276 CDS YP_001498945.1 157964121 5664924 79902..80336 1 NC_009900.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 80336 ndk 5664924 ndk Rickettsia massiliae MTU5 nucleoside diphosphate kinase YP_001498945.1 79902 D 416276 CDS YP_001498946.1 157964122 5665112 80340..82208 1 NC_009900.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 82208 gidA 5665112 gidA Rickettsia massiliae MTU5 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_001498946.1 80340 D 416276 CDS YP_001498947.1 157964123 5665113 82186..82767 1 NC_009900.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 82767 gidB 5665113 gidB Rickettsia massiliae MTU5 16S rRNA methyltransferase GidB YP_001498947.1 82186 D 416276 CDS YP_001498948.1 157964124 5665114 82764..83531 1 NC_009900.1 chromosome partitioning ATPase 83531 soj 5665114 soj Rickettsia massiliae MTU5 chromosome partitioning ATPase YP_001498948.1 82764 D 416276 CDS YP_001498949.1 157964125 5665024 83518..84381 1 NC_009900.1 ParB-like partition protein 84381 5665024 RMA_0094 Rickettsia massiliae MTU5 ParB-like partition protein YP_001498949.1 83518 D 416276 CDS YP_001498950.1 157964126 5665025 84643..86310 1 NC_009900.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 86310 abcT1 5665025 abcT1 Rickettsia massiliae MTU5 putative ABC transporter ATP-binding protein YP_001498950.1 84643 D 416276 CDS YP_001498951.1 157964127 5666182 86301..86630 1 NC_009900.1 hypothetical protein 86630 5666182 RMA_0096 Rickettsia massiliae MTU5 hypothetical protein YP_001498951.1 86301 D 416276 CDS YP_001498952.1 157964128 5666183 86663..87490 1 NC_009900.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 87490 kdsA 5666183 kdsA Rickettsia massiliae MTU5 2-dehydro-3-deoxyphosphooctonate aldolase YP_001498952.1 86663 D 416276 CDS YP_001498953.1 157964129 5666274 complement(89522..89854) 1 NC_009900.1 Iron-sulfur cluster assembly accessory protein 89854 iscA1 5666274 iscA1 Rickettsia massiliae MTU5 Iron-sulfur cluster assembly accessory protein YP_001498953.1 89522 R 416276 CDS YP_001498954.1 157964130 5666275 90109..91269 1 NC_009900.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 91269 dgt 5666275 dgt Rickettsia massiliae MTU5 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_001498954.1 90109 D 416276 CDS YP_001498955.1 157964131 5666276 91413..93149 1 NC_009900.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 93149 argS 5666276 argS Rickettsia massiliae MTU5 arginyl-tRNA synthetase YP_001498955.1 91413 D 416276 CDS YP_001498956.1 157964132 5665817 93304..93996 1 NC_009900.1 hypothetical protein 93996 5665817 RMA_0104 Rickettsia massiliae MTU5 hypothetical protein YP_001498956.1 93304 D 416276 CDS YP_001498957.1 157964133 5665818 94187..96400 1 NC_009900.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 96400 parC 5665818 parC Rickettsia massiliae MTU5 DNA topoisomerase IV subunit A YP_001498957.1 94187 D 416276 CDS YP_001498958.1 157964134 5665220 complement(97617..98939) 1 NC_009900.1 hypothetical protein 98939 5665220 RMA_0106 Rickettsia massiliae MTU5 hypothetical protein YP_001498958.1 97617 R 416276 CDS YP_001498959.1 157964135 5665221 99203..99775 1 NC_009900.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 99775 dcd 5665221 dcd Rickettsia massiliae MTU5 deoxycytidine triphosphate deaminase YP_001498959.1 99203 D 416276 CDS YP_001498960.1 157964136 5665222 99809..100279 1 NC_009900.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 100279 secB 5665222 secB Rickettsia massiliae MTU5 preprotein translocase subunit SecB YP_001498960.1 99809 D 416276 CDS YP_001498961.1 157964137 5665726 100486..101217 1 NC_009900.1 transcriptional activator protein CzcR 101217 czcR 5665726 czcR Rickettsia massiliae MTU5 transcriptional activator protein CzcR YP_001498961.1 100486 D 416276 CDS YP_001498962.1 157964138 5665727 101221..102042 1 NC_009900.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 102042 queF 5665727 queF Rickettsia massiliae MTU5 7-cyano-7-deazaguanine reductase YP_001498962.1 101221 D 416276 CDS YP_001498963.1 157964139 5665728 complement(102367..102933) 1 NC_009900.1 hypothetical protein 102933 5665728 RMA_0111 Rickettsia massiliae MTU5 hypothetical protein YP_001498963.1 102367 R 416276 CDS YP_001498964.1 157964140 5665594 complement(102982..104409) 1 NC_009900.1 NAD(p) transhydrogenase subunit beta 104409 pntB 5665594 pntB Rickettsia massiliae MTU5 NAD(p) transhydrogenase subunit beta YP_001498964.1 102982 R 416276 CDS YP_001498965.1 157964141 5665595 complement(104517..105251) 1 NC_009900.1 OmpW family outer-membrane protein 105251 ompW 5665595 ompW Rickettsia massiliae MTU5 OmpW family outer-membrane protein YP_001498965.1 104517 R 416276 CDS YP_001498966.1 157964142 5665912 105400..106290 1 NC_009900.1 S-adenosylmethionine transporter 106290 sam 5665912 sam Rickettsia massiliae MTU5 S-adenosylmethionine transporter YP_001498966.1 105400 D 416276 CDS YP_001498967.1 157964143 5665913 106268..107533 1 NC_009900.1 proline/betaine transporter 107533 proP1 5665913 proP1 Rickettsia massiliae MTU5 proline/betaine transporter YP_001498967.1 106268 D 416276 CDS YP_001498968.1 157964144 5665914 107530..108024 1 NC_009900.1 hypothetical protein 108024 5665914 RMA_0116 Rickettsia massiliae MTU5 hypothetical protein YP_001498968.1 107530 D 416276 CDS YP_001498969.1 157964145 5665083 108366..108668 1 NC_009900.1 preprotein translocase subunit SecG 108668 secG 5665083 secG Rickettsia massiliae MTU5 preprotein translocase subunit SecG YP_001498969.1 108366 D 416276 CDS YP_001498970.1 157964146 5665013 complement(109631..115048) 1 NC_009900.1 cell surface antigen Sca2 115048 sca2 5665013 sca2 Rickettsia massiliae MTU5 cell surface antigen Sca2 YP_001498970.1 109631 R 416276 CDS YP_001498971.1 157964147 5665693 115281..116660 1 NC_009900.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 116660 cysS 5665693 cysS Rickettsia massiliae MTU5 cysteinyl-tRNA synthetase YP_001498971.1 115281 D 416276 CDS YP_001498972.1 157964148 5665694 116853..117791 1 NC_009900.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 117791 rpsB 5665694 rpsB Rickettsia massiliae MTU5 30S ribosomal protein S2 YP_001498972.1 116853 D 416276 CDS YP_001498973.1 157964149 5665490 117979..118908 1 NC_009900.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 118908 tsf 5665490 tsf Rickettsia massiliae MTU5 elongation factor Ts YP_001498973.1 117979 D 416276 CDS YP_001498974.1 157964150 5665026 complement(120427..121851) 1 NC_009900.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 121851 kdtA 5665026 kdtA Rickettsia massiliae MTU5 3-deoxy-D-manno-octulosonic-acid transferase YP_001498974.1 120427 R 416276 CDS YP_001498975.1 157964151 5665027 complement(121797..122477) 1 NC_009900.1 hypothetical protein 122477 5665027 RMA_0126 Rickettsia massiliae MTU5 hypothetical protein YP_001498975.1 121797 R 416276 CDS YP_001498976.1 157964152 5665028 complement(122625..123845) 1 NC_009900.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 123845 aatA 5665028 aatA Rickettsia massiliae MTU5 aspartate aminotransferase YP_001498976.1 122625 R 416276 CDS YP_001498977.1 157964153 5665874 complement(123890..124153) 1 NC_009900.1 hypothetical protein 124153 5665874 RMA_0128 Rickettsia massiliae MTU5 hypothetical protein YP_001498977.1 123890 R 416276 CDS YP_001498978.1 157964154 5665875 complement(124146..124397) 1 NC_009900.1 antitoxin of toxin-antitoxin 124397 5665875 RMA_0129 Rickettsia massiliae MTU5 antitoxin of toxin-antitoxin YP_001498978.1 124146 R 416276 CDS YP_001498979.1 157964155 5665199 124539..125543 1 NC_009900.1 hypothetical protein 125543 5665199 RMA_0130 Rickettsia massiliae MTU5 hypothetical protein YP_001498979.1 124539 D 416276 CDS YP_001498980.1 157964156 5665200 125506..126303 1 NC_009900.1 VacJ lipoprotein precursor 126303 vacJ 5665200 vacJ Rickettsia massiliae MTU5 VacJ lipoprotein precursor YP_001498980.1 125506 D 416276 CDS YP_001498981.1 157964157 5665201 126200..126922 1 NC_009900.1 related to toluene tolerance; ABC transporter 126922 5665201 RMA_0132 Rickettsia massiliae MTU5 ABC transporter YP_001498981.1 126200 D 416276 CDS YP_001498982.1 157964158 5665528 127100..128128 1 NC_009900.1 ribose-phosphate pyrophosphokinase 128128 prs 5665528 prs Rickettsia massiliae MTU5 ribose-phosphate pyrophosphokinase YP_001498982.1 127100 D 416276 CDS YP_001498983.1 157964159 5665529 128059..129192 1 NC_009900.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 129192 alr 5665529 alr Rickettsia massiliae MTU5 alanine racemase YP_001498983.1 128059 D 416276 CDS YP_001498984.1 157964160 5665530 129330..130124 1 NC_009900.1 ABC transporter permease 130124 5665530 RMA_0135 Rickettsia massiliae MTU5 ABC transporter permease YP_001498984.1 129330 D 416276 CDS YP_001498985.1 157964161 5665229 130194..131033 1 NC_009900.1 ribonucleotide ABC transporter ATP-binding protein 131033 mkl 5665229 mkl Rickettsia massiliae MTU5 ribonucleotide ABC transporter ATP-binding protein YP_001498985.1 130194 D 416276 CDS YP_001498986.1 157964162 5665230 131035..131283 1 NC_009900.1 hypothetical protein 131283 5665230 RMA_0137 Rickettsia massiliae MTU5 hypothetical protein YP_001498986.1 131035 D 416276 CDS YP_001498987.1 157964163 5666041 complement(132534..132911) 1 NC_009900.1 hypothetical protein 132911 5666041 RMA_0138 Rickettsia massiliae MTU5 hypothetical protein YP_001498987.1 132534 R 416276 CDS YP_001498988.1 157964164 5666042 complement(132927..133361) 1 NC_009900.1 hypothetical protein 133361 5666042 RMA_0139 Rickettsia massiliae MTU5 hypothetical protein YP_001498988.1 132927 R 416276 CDS YP_001498989.1 157964165 5666043 133727..134020 1 NC_009900.1 required for 70S ribosome assembly; 50S ribosomal protein L28 134020 rpmB 5666043 rpmB Rickettsia massiliae MTU5 50S ribosomal protein L28 YP_001498989.1 133727 D 416276 CDS YP_001498990.1 157964166 5665266 134011..134253 1 NC_009900.1 RpmE; RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 134253 rpmE 5665266 rpmE Rickettsia massiliae MTU5 50S ribosomal protein L31 YP_001498990.1 134011 D 416276 CDS YP_001498991.1 157964167 5665084 134647..135288 1 NC_009900.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 135288 engB 5665084 engB Rickettsia massiliae MTU5 ribosome biogenesis GTP-binding protein YsxC YP_001498991.1 134647 D 416276 CDS YP_001498992.1 157964168 5665268 135236..136159 1 NC_009900.1 acetylglutamate kinase 136159 argB 5665268 argB Rickettsia massiliae MTU5 acetylglutamate kinase YP_001498992.1 135236 D 416276 CDS YP_001498993.1 157964169 5665604 136172..136459 1 NC_009900.1 type IV secretion system protein VirB3 136459 virB3 5665604 virB3 Rickettsia massiliae MTU5 type IV secretion system protein VirB3 YP_001498993.1 136172 D 416276 CDS YP_001498994.1 157964170 5665605 136521..138965 1 NC_009900.1 type IV secretion system ATPase VirB4 138965 virB4-1 5665605 virB4-1 Rickettsia massiliae MTU5 type IV secretion system ATPase VirB4 YP_001498994.1 136521 D 416276 CDS YP_001498995.1 157964171 5664963 139083..142493 1 NC_009900.1 VirB6 142493 virB6-1 5664963 virB6-1 Rickettsia massiliae MTU5 VirB6 YP_001498995.1 139083 D 416276 CDS YP_001498996.1 157964172 5664964 142468..144465 1 NC_009900.1 VirB6 144465 virB6-2 5664964 virB6-2 Rickettsia massiliae MTU5 VirB6 YP_001498996.1 142468 D 416276 CDS YP_001498997.1 157964173 5664965 144472..147372 1 NC_009900.1 VirB6 147372 virB6-3 5664965 virB6-3 Rickettsia massiliae MTU5 VirB6 YP_001498997.1 144472 D 416276 CDS YP_001498998.1 157964174 5665188 147547..150225 1 NC_009900.1 VirB6 150225 virB6-4 5665188 virB6-4 Rickettsia massiliae MTU5 VirB6 YP_001498998.1 147547 D 416276 CDS YP_001498999.1 157964175 5665949 157072..157812 1 NC_009900.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 157812 trmD 5665949 trmD Rickettsia massiliae MTU5 tRNA (guanine-N(1)-)-methyltransferase YP_001498999.1 157072 D 416276 CDS YP_001499000.1 157964176 5665950 157839..158255 1 NC_009900.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 158255 rplS 5665950 rplS Rickettsia massiliae MTU5 50S ribosomal protein L19 YP_001499000.1 157839 D 416276 CDS YP_001499001.1 157964177 5665478 complement(158428..158664) 1 NC_009900.1 hypothetical protein 158664 5665478 RMA_0160 Rickettsia massiliae MTU5 hypothetical protein YP_001499001.1 158428 R 416276 CDS YP_001499002.1 157964178 5665479 158731..159663 1 NC_009900.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 159663 secF 5665479 secF Rickettsia massiliae MTU5 preprotein translocase subunit SecF YP_001499002.1 158731 D 416276 CDS YP_001499003.1 157964179 5666017 159788..161053 1 NC_009900.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 161053 nuoF 5666017 nuoF Rickettsia massiliae MTU5 NADH dehydrogenase I subunit F YP_001499003.1 159788 D 416276 CDS YP_001499004.1 157964180 5666018 161234..162037 1 NC_009900.1 Signal peptidase I 162037 lepB 5666018 lepB Rickettsia massiliae MTU5 Signal peptidase I YP_001499004.1 161234 D 416276 CDS YP_001499005.1 157964181 5666019 162037..162720 1 NC_009900.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 162720 rnc 5666019 rnc Rickettsia massiliae MTU5 ribonuclease III YP_001499005.1 162037 D 416276 CDS YP_001499006.1 157964182 5664994 162701..163744 1 NC_009900.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 163744 era 5664994 era Rickettsia massiliae MTU5 GTP-binding protein Era YP_001499006.1 162701 D 416276 CDS YP_001499007.1 157964183 5664995 163856..164335 1 NC_009900.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 164335 ruvC 5664995 ruvC Rickettsia massiliae MTU5 Holliday junction resolvase YP_001499007.1 163856 D 416276 CDS YP_001499008.1 157964184 5664996 164328..165029 1 NC_009900.1 tRNA/rRNA methyltransferase 165029 5664996 RMA_0167 Rickettsia massiliae MTU5 tRNA/rRNA methyltransferase YP_001499008.1 164328 D 416276 CDS YP_001499009.1 157964185 5665626 complement(165010..165396) 1 NC_009900.1 nucleotidyltransferase substrate binding protein 165396 5665626 RMA_0168 Rickettsia massiliae MTU5 nucleotidyltransferase substrate binding protein YP_001499009.1 165010 R 416276 CDS YP_001499010.1 157964186 5665627 complement(165377..165682) 1 NC_009900.1 nucleotidyltransferase domain-containing protein 165682 5665627 RMA_0169 Rickettsia massiliae MTU5 nucleotidyltransferase domain-containing protein YP_001499010.1 165377 R 416276 CDS YP_001499011.1 157964187 5665786 complement(165687..166784) 1 NC_009900.1 putative nucleoside-diphosphate-sugar epimerase 166784 5665786 RMA_0170 Rickettsia massiliae MTU5 putative nucleoside-diphosphate-sugar epimerase YP_001499011.1 165687 R 416276 CDS YP_001499012.1 157964188 5665787 complement(166730..167692) 1 NC_009900.1 hypothetical protein 167692 mrp 5665787 mrp Rickettsia massiliae MTU5 hypothetical protein YP_001499012.1 166730 R 416276 CDS YP_001499013.1 157964189 5665788 167794..168834 1 NC_009900.1 protease activity modulator HflK 168834 hflK 5665788 hflK Rickettsia massiliae MTU5 protease activity modulator HflK YP_001499013.1 167794 D 416276 CDS YP_001499014.1 157964190 5665792 168927..169787 1 NC_009900.1 membrane protease subunit stomatin/prohibitin-like protein 169787 hflC2 5665792 hflC2 Rickettsia massiliae MTU5 membrane protease subunit stomatin/prohibitin-like protein YP_001499014.1 168927 D 416276 CDS YP_001499015.1 157964191 5665793 169810..171351 1 NC_009900.1 serine protease 171351 htrA 5665793 htrA Rickettsia massiliae MTU5 serine protease YP_001499015.1 169810 D 416276 CDS YP_001499016.1 157964192 5665794 171386..172129 1 NC_009900.1 hypothetical protein 172129 5665794 RMA_0175 Rickettsia massiliae MTU5 hypothetical protein YP_001499016.1 171386 D 416276 CDS YP_001499017.1 157964193 5665869 172282..172656 1 NC_009900.1 succinate dehydrogenase cytochrome b-556 subunit 172656 sdhC 5665869 sdhC Rickettsia massiliae MTU5 succinate dehydrogenase cytochrome b-556 subunit YP_001499017.1 172282 D 416276 CDS YP_001499018.1 157964194 5665870 172806..173183 1 NC_009900.1 succinate dehydrogenase hydrophobic membrane anchor protein 173183 sdhD 5665870 sdhD Rickettsia massiliae MTU5 succinate dehydrogenase hydrophobic membrane anchor protein YP_001499018.1 172806 D 416276 CDS YP_001499019.1 157964195 5665654 173320..175119 1 NC_009900.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 175119 sdhA 5665654 sdhA Rickettsia massiliae MTU5 succinate dehydrogenase flavoprotein subunit YP_001499019.1 173320 D 416276 CDS YP_001499020.1 157964196 5665655 175222..175878 1 NC_009900.1 amino acid ABC transporter permease 175878 yqiY 5665655 yqiY Rickettsia massiliae MTU5 amino acid ABC transporter permease YP_001499020.1 175222 D 416276 CDS YP_001499021.1 157964197 5665656 175948..176427 1 NC_009900.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 176427 rpsL 5665656 rpsL Rickettsia massiliae MTU5 30S ribosomal protein S12 YP_001499021.1 175948 D 416276 CDS YP_001499022.1 157964198 5665701 176454..176936 1 NC_009900.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 176936 rpsG 5665701 rpsG Rickettsia massiliae MTU5 30S ribosomal protein S7 YP_001499022.1 176454 D 416276 CDS YP_001499023.1 157964199 5665702 176946..179042 1 NC_009900.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 179042 fusA 5665702 fusA Rickettsia massiliae MTU5 elongation factor G YP_001499023.1 176946 D 416276 CDS YP_001499024.1 157964200 5665274 179358..179666 1 NC_009900.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 179666 secE 5665274 secE Rickettsia massiliae MTU5 preprotein translocase subunit SecE YP_001499024.1 179358 D 416276 CDS YP_001499025.1 157964201 5664890 179679..180260 1 NC_009900.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 180260 nusG 5664890 nusG Rickettsia massiliae MTU5 transcription antitermination protein NusG YP_001499025.1 179679 D 416276 CDS YP_001499026.1 157964202 5664891 180533..180970 1 NC_009900.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 180970 rplK 5664891 rplK Rickettsia massiliae MTU5 50S ribosomal protein L11 YP_001499026.1 180533 D 416276 CDS YP_001499027.1 157964203 5665091 180970..181695 1 NC_009900.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 181695 rplA 5665091 rplA Rickettsia massiliae MTU5 50S ribosomal protein L1 YP_001499027.1 180970 D 416276 CDS YP_001499028.1 157964204 5665092 181806..182315 1 NC_009900.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 182315 rplJ 5665092 rplJ Rickettsia massiliae MTU5 50S ribosomal protein L10 YP_001499028.1 181806 D 416276 CDS YP_001499029.1 157964205 5665093 182459..182887 1 NC_009900.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 182887 rplL 5665093 rplL Rickettsia massiliae MTU5 50S ribosomal protein L7/L12 YP_001499029.1 182459 D 416276 CDS YP_001499030.1 157964206 5665053 183736..187857 1 NC_009900.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 187857 rpoB 5665053 rpoB Rickettsia massiliae MTU5 DNA-directed RNA polymerase subunit beta YP_001499030.1 183736 D 416276 CDS YP_001499031.1 157964207 5665054 188111..192235 1 NC_009900.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 192235 rpoC 5665054 rpoC Rickettsia massiliae MTU5 DNA-directed RNA polymerase subunit beta' YP_001499031.1 188111 D 416276 CDS YP_001499032.1 157964208 5665055 complement(192639..193814) 1 NC_009900.1 hypothetical protein 193814 5665055 RMA_0191 Rickettsia massiliae MTU5 hypothetical protein YP_001499032.1 192639 R 416276 CDS YP_001499033.1 157964209 5665902 193974..195476 1 NC_009900.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 195476 pepA 5665902 pepA Rickettsia massiliae MTU5 leucyl aminopeptidase YP_001499033.1 193974 D 416276 CDS YP_001499034.1 157964210 5665903 195663..196478 1 NC_009900.1 chromosome partitioning protein-like protein 196478 5665903 RMA_0193 Rickettsia massiliae MTU5 chromosome partitioning protein-like protein YP_001499034.1 195663 D 416276 CDS YP_001499035.1 157964211 5665050 196555..197025 1 NC_009900.1 hypothetical protein 197025 5665050 RMA_0194 Rickettsia massiliae MTU5 hypothetical protein YP_001499035.1 196555 D 416276 CDS YP_001499036.1 157964212 5665051 197102..198925 1 NC_009900.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 198925 aspS 5665051 aspS Rickettsia massiliae MTU5 aspartyl-tRNA synthetase YP_001499036.1 197102 D 416276 CDS YP_001499037.1 157964213 5665052 complement(199193..201331) 1 NC_009900.1 hypothetical protein 201331 5665052 RMA_0196 Rickettsia massiliae MTU5 hypothetical protein YP_001499037.1 199193 R 416276 CDS YP_001499038.1 157964214 5665970 complement(201701..202450) 1 NC_009900.1 integral membrane protein 202450 5665970 RMA_0197 Rickettsia massiliae MTU5 integral membrane protein YP_001499038.1 201701 R 416276 CDS YP_001499039.1 157964215 5665971 complement(202485..203342) 1 NC_009900.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 203342 dapB 5665971 dapB Rickettsia massiliae MTU5 dihydrodipicolinate reductase YP_001499039.1 202485 R 416276 CDS YP_001499040.1 157964216 5665972 complement(203467..203946) 1 NC_009900.1 flavoprotein oxygenase DIM6/NTAB family protein 203946 5665972 RMA_0199 Rickettsia massiliae MTU5 flavoprotein oxygenase DIM6/NTAB family protein YP_001499040.1 203467 R 416276 CDS YP_001499041.1 157964217 5665480 complement(203931..204662) 1 NC_009900.1 amino acid ABC transporter substrate-binding protein 204662 yqiX 5665480 yqiX Rickettsia massiliae MTU5 amino acid ABC transporter substrate-binding protein YP_001499041.1 203931 R 416276 CDS YP_001499042.1 157964218 5665481 complement(204832..206319) 1 NC_009900.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 206319 gatB 5665481 gatB Rickettsia massiliae MTU5 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_001499042.1 204832 R 416276 CDS YP_001499043.1 157964219 5666092 complement(206319..207806) 1 NC_009900.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 207806 gatA 5666092 gatA Rickettsia massiliae MTU5 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_001499043.1 206319 R 416276 CDS YP_001499044.1 157964220 5666093 complement(207803..208141) 1 NC_009900.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 208141 gatC 5666093 gatC Rickettsia massiliae MTU5 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_001499044.1 207803 R 416276 CDS YP_001499045.1 157964221 5666094 complement(208908..209474) 1 NC_009900.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 209474 frr 5666094 frr Rickettsia massiliae MTU5 ribosome recycling factor YP_001499045.1 208908 R 416276 CDS YP_001499046.1 157964222 5665918 complement(209761..210513) 1 NC_009900.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 210513 pyrH 5665918 pyrH Rickettsia massiliae MTU5 uridylate kinase YP_001499046.1 209761 R 416276 CDS YP_001499047.1 157964223 5665919 complement(210498..210827) 1 NC_009900.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit E 210827 mnhE 5665919 mnhE Rickettsia massiliae MTU5 putative monovalent cation/H+ antiporter subunit E YP_001499047.1 210498 R 416276 CDS YP_001499048.1 157964224 5665920 complement(210805..212379) 1 NC_009900.1 MFS-type multidrug resistance protein B 212379 emrB 5665920 emrB Rickettsia massiliae MTU5 MFS-type multidrug resistance protein B YP_001499048.1 210805 R 416276 CDS YP_001499049.1 157964225 5665583 212589..212798 1 NC_009900.1 hypothetical protein 212798 5665583 RMA_0208 Rickettsia massiliae MTU5 hypothetical protein YP_001499049.1 212589 D 416276 CDS YP_001499050.1 157964226 5665584 complement(213426..214016) 1 NC_009900.1 hypothetical protein 214016 5665584 RMA_0209 Rickettsia massiliae MTU5 hypothetical protein YP_001499050.1 213426 R 416276 CDS YP_001499051.1 157964227 5666148 complement(214746..217052) 1 NC_009900.1 Outer membrane protein omp1 217052 omp1 5666148 omp1 Rickettsia massiliae MTU5 Outer membrane protein omp1 YP_001499051.1 214746 R 416276 CDS YP_001499052.1 157964228 5665449 complement(217291..218370) 1 NC_009900.1 putative membrane-associated zinc metalloprotease 218370 5665449 RMA_0211 Rickettsia massiliae MTU5 putative membrane-associated zinc metalloprotease YP_001499052.1 217291 R 416276 CDS YP_001499053.1 157964229 5665450 218650..219120 1 NC_009900.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 219120 nusB 5665450 nusB Rickettsia massiliae MTU5 transcription antitermination protein NusB YP_001499053.1 218650 D 416276 CDS YP_001499054.1 157964230 5665738 219124..219942 1 NC_009900.1 ribosomal RNA large subunit methyltransferase J 219942 rrmJ 5665738 rrmJ Rickettsia massiliae MTU5 ribosomal RNA large subunit methyltransferase J YP_001499054.1 219124 D 416276 CDS YP_001499055.1 157964231 5665739 complement(220005..221102) 1 NC_009900.1 hypothetical protein 221102 5665739 RMA_0214 Rickettsia massiliae MTU5 hypothetical protein YP_001499055.1 220005 R 416276 CDS YP_001499056.1 157964232 5665740 221253..222206 1 NC_009900.1 hypothetical protein 222206 5665740 RMA_0215 Rickettsia massiliae MTU5 hypothetical protein YP_001499056.1 221253 D 416276 CDS YP_001499057.1 157964233 5665056 complement(222265..222705) 1 NC_009900.1 oligoketide cyclase/lipid transport protein 222705 5665056 RMA_0216 Rickettsia massiliae MTU5 oligoketide cyclase/lipid transport protein YP_001499057.1 222265 R 416276 CDS YP_001499058.1 157964234 5665057 complement(222705..223025) 1 NC_009900.1 hypothetical protein 223025 5665057 RMA_0217 Rickettsia massiliae MTU5 hypothetical protein YP_001499058.1 222705 R 416276 CDS YP_001499059.2 229594326 5665126 222999..223730 1 NC_009900.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 223730 5665126 RMA_0218 Rickettsia massiliae MTU5 16S ribosomal RNA methyltransferase RsmE YP_001499059.2 222999 D 416276 CDS YP_001499060.1 157964236 5665127 complement(223816..224052) 1 NC_009900.1 hypothetical protein 224052 5665127 RMA_0219 Rickettsia massiliae MTU5 hypothetical protein YP_001499060.1 223816 R 416276 CDS YP_001499061.1 157964237 5665128 complement(224305..227364) 1 NC_009900.1 hydrophobe/amphiphile efflux-1 (HAE1) family protein 227364 acrF 5665128 acrF Rickettsia massiliae MTU5 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001499061.1 224305 R 416276 CDS YP_001499062.1 157964238 5666194 227724..228143 1 NC_009900.1 DNA-binding protein HU 228143 hupA 5666194 hupA Rickettsia massiliae MTU5 DNA-binding protein HU YP_001499062.1 227724 D 416276 CDS YP_001499063.1 157964239 5666195 228280..229092 1 NC_009900.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 229092 holB 5666195 holB Rickettsia massiliae MTU5 DNA polymerase III subunit delta' YP_001499063.1 228280 D 416276 CDS YP_001499064.1 157964240 5666196 229297..230655 1 NC_009900.1 Signal recognition particle protein 230655 ffh 5666196 ffh Rickettsia massiliae MTU5 Signal recognition particle protein YP_001499064.1 229297 D 416276 CDS YP_001499065.1 157964241 5665072 233432..234598 1 NC_009900.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 234598 hemN 5665072 hemN Rickettsia massiliae MTU5 coproporphyrinogen III oxidase YP_001499065.1 233432 D 416276 CDS YP_001499066.1 157964242 5665294 complement(237186..238388) 1 NC_009900.1 Na+/H+-dicarboxylate symporter 238388 gltP 5665294 gltP Rickettsia massiliae MTU5 Na+/H+-dicarboxylate symporter YP_001499066.1 237186 R 416276 CDS YP_001499067.1 157964243 5665295 complement(238426..238740) 1 NC_009900.1 divalent cation tolerance protein 238740 cutA 5665295 cutA Rickettsia massiliae MTU5 divalent cation tolerance protein YP_001499067.1 238426 R 416276 CDS YP_001499068.1 157964244 5666107 complement(238743..239165) 1 NC_009900.1 putative 6-pyruvoyl tetrahydropterin synthase 239165 5666107 RMA_0237 Rickettsia massiliae MTU5 putative 6-pyruvoyl tetrahydropterin synthase YP_001499068.1 238743 R 416276 CDS YP_001499069.1 157964245 5666108 complement(239328..240533) 1 NC_009900.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 240533 sucB 5666108 sucB Rickettsia massiliae MTU5 dihydrolipoamide succinyltransferase YP_001499069.1 239328 R 416276 CDS YP_001499070.1 157964246 5666109 complement(240695..243481) 1 NC_009900.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 243481 sucA 5666109 sucA Rickettsia massiliae MTU5 2-oxoglutarate dehydrogenase E1 component YP_001499070.1 240695 R 416276 CDS YP_001499071.1 157964247 5665182 complement(244574..246223) 1 NC_009900.1 DNA repair protein RecN 246223 recN 5665182 recN Rickettsia massiliae MTU5 DNA repair protein RecN YP_001499071.1 244574 R 416276 CDS YP_001499072.1 157964248 5665183 complement(246219..246974) 1 NC_009900.1 DNA uptake lipoprotein 246974 comL 5665183 comL Rickettsia massiliae MTU5 DNA uptake lipoprotein YP_001499072.1 246219 R 416276 CDS YP_001499073.1 157964249 5664867 complement(247546..248670) 1 NC_009900.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 248670 dnaJ 5664867 dnaJ Rickettsia massiliae MTU5 chaperone protein DnaJ YP_001499073.1 247546 R 416276 CDS YP_001499074.1 157964250 5664868 complement(248797..250797) 1 NC_009900.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 250797 dnaK 5664868 dnaK Rickettsia massiliae MTU5 molecular chaperone DnaK YP_001499074.1 248797 R 416276 CDS YP_001499075.1 157964251 5664869 250743..252236 1 NC_009900.1 heat shock protease 252236 5664869 RMA_0247 Rickettsia massiliae MTU5 heat shock protease YP_001499075.1 250743 D 416276 CDS YP_001499076.1 157964252 5666134 complement(254866..255243) 1 NC_009900.1 hypothetical protein 255243 5666134 RMA_0250 Rickettsia massiliae MTU5 hypothetical protein YP_001499076.1 254866 R 416276 CDS YP_001499077.1 157964253 5666135 255413..255895 1 NC_009900.1 hypothetical protein 255895 5666135 RMA_0251 Rickettsia massiliae MTU5 hypothetical protein YP_001499077.1 255413 D 416276 CDS YP_001499078.1 157964254 5666136 255903..256877 1 NC_009900.1 required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 256877 holA 5666136 holA Rickettsia massiliae MTU5 DNA polymerase III subunit delta YP_001499078.1 255903 D 416276 CDS YP_001499079.1 157964255 5665375 256983..257549 1 NC_009900.1 ubiquinone biosynthesis protein coq7 257549 coq7 5665375 coq7 Rickettsia massiliae MTU5 ubiquinone biosynthesis protein coq7 YP_001499079.1 256983 D 416276 CDS YP_001499080.1 157964256 5665376 258176..259027 1 NC_009900.1 cytochrome c oxidase subunit III 259027 coxC 5665376 coxC Rickettsia massiliae MTU5 cytochrome c oxidase subunit III YP_001499080.1 258176 D 416276 CDS YP_001499081.1 157964257 5665377 259135..259545 1 NC_009900.1 VirB2-like protein 259545 virB2 5665377 virB2 Rickettsia massiliae MTU5 VirB2-like protein YP_001499081.1 259135 D 416276 CDS YP_001499082.1 157964258 5665538 complement(259979..260611) 1 NC_009900.1 hypothetical protein 260611 5665538 RMA_0256 Rickettsia massiliae MTU5 hypothetical protein YP_001499082.1 259979 R 416276 CDS YP_001499083.1 157964259 5665539 260663..261511 1 NC_009900.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 261511 dapD 5665539 dapD Rickettsia massiliae MTU5 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_001499083.1 260663 D 416276 CDS YP_001499084.1 157964260 5665187 complement(263634..266051) 1 NC_009900.1 bifunctional penicillin-binding protein 1C 266051 pbpC 5665187 pbpC Rickettsia massiliae MTU5 bifunctional penicillin-binding protein 1C YP_001499084.1 263634 R 416276 CDS YP_001499085.1 157964261 5665591 complement(271262..271708) 1 NC_009900.1 similar to related nucleotide-binding proteins; universal stress protein UspA 271708 uspA 5665591 uspA Rickettsia massiliae MTU5 universal stress protein UspA YP_001499085.1 271262 R 416276 CDS YP_001499086.1 157964262 5665592 complement(271718..272710) 1 NC_009900.1 TRAP-type transport system, periplasmic protein 272710 imp 5665592 imp Rickettsia massiliae MTU5 TRAP-type transport system, periplasmic protein YP_001499086.1 271718 R 416276 CDS YP_001499087.1 157964263 5665593 complement(272664..273728) 1 NC_009900.1 hypothetical protein 273728 5665593 RMA_0268 Rickettsia massiliae MTU5 hypothetical protein YP_001499087.1 272664 R 416276 CDS YP_001499088.1 157964264 5666061 complement(273732..274079) 1 NC_009900.1 ferredoxin 274079 fdxB 5666061 fdxB Rickettsia massiliae MTU5 ferredoxin YP_001499088.1 273732 R 416276 CDS YP_001499089.1 157964265 5666062 complement(274141..275931) 1 NC_009900.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 275931 hscA 5666062 hscA Rickettsia massiliae MTU5 chaperone protein HscA YP_001499089.1 274141 R 416276 CDS YP_001499090.1 157964266 5666063 complement(275919..276419) 1 NC_009900.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 276419 hscB 5666063 hscB Rickettsia massiliae MTU5 co-chaperone HscB YP_001499090.1 275919 R 416276 CDS YP_001499091.1 157964267 5665170 276478..277062 1 NC_009900.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 277062 rnhB 5665170 rnhB Rickettsia massiliae MTU5 ribonuclease HII YP_001499091.1 276478 D 416276 CDS YP_001499092.1 157964268 5665171 complement(277221..279206) 1 NC_009900.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 279206 uvrB 5665171 uvrB Rickettsia massiliae MTU5 excinuclease ABC subunit B YP_001499092.1 277221 R 416276 CDS YP_001499093.1 157964269 5665100 279276..279587 1 NC_009900.1 GrxC family glutaredoxin 279587 grxC1 5665100 grxC1 Rickettsia massiliae MTU5 GrxC family glutaredoxin YP_001499093.1 279276 D 416276 CDS YP_001499094.1 157964270 5665101 279732..281522 1 NC_009900.1 multidrug resistance protein Atm1 281522 atm1 5665101 atm1 Rickettsia massiliae MTU5 multidrug resistance protein Atm1 YP_001499094.1 279732 D 416276 CDS YP_001499095.1 157964271 5665102 281875..284595 1 NC_009900.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 284595 gyrA 5665102 gyrA Rickettsia massiliae MTU5 DNA gyrase subunit A YP_001499095.1 281875 D 416276 CDS YP_001499096.1 157964272 5665691 286635..286823 1 NC_009900.1 hypothetical protein 286823 5665691 RMA_0278 Rickettsia massiliae MTU5 hypothetical protein YP_001499096.1 286635 D 416276 CDS YP_001499097.1 157964273 5665692 287270..287800 1 NC_009900.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 287800 def 5665692 def Rickettsia massiliae MTU5 peptide deformylase YP_001499097.1 287270 D 416276 CDS YP_001499098.1 157964274 5665765 287797..288705 1 NC_009900.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 288705 fmt 5665765 fmt Rickettsia massiliae MTU5 methionyl-tRNA formyltransferase YP_001499098.1 287797 D 416276 CDS YP_001499099.1 157964275 5666169 complement(293862..294923) 1 NC_009900.1 putative ATPase n2B 294923 n2B 5666169 n2B Rickettsia massiliae MTU5 putative ATPase n2B YP_001499099.1 293862 R 416276 CDS YP_001499100.1 157964276 5666069 296560..296859 1 NC_009900.1 ankyrin repeat-containing protein 296859 5666069 RMA_0292 Rickettsia massiliae MTU5 ankyrin repeat-containing protein YP_001499100.1 296560 D 416276 CDS YP_001499101.1 157964277 5666020 297022..297291 1 NC_009900.1 hypothetical protein 297291 5666020 RMA_0293 Rickettsia massiliae MTU5 hypothetical protein YP_001499101.1 297022 D 416276 CDS YP_001499102.1 157964278 5666021 complement(297576..299399) 1 NC_009900.1 multidrug ABC transporter ATP-binding protein 299399 abcT3 5666021 abcT3 Rickettsia massiliae MTU5 multidrug ABC transporter ATP-binding protein YP_001499102.1 297576 R 416276 CDS YP_001499103.1 157964279 5666022 299507..299800 1 NC_009900.1 hypothetical protein 299800 5666022 RMA_0295 Rickettsia massiliae MTU5 hypothetical protein YP_001499103.1 299507 D 416276 CDS YP_001499104.1 157964280 5666084 299952..301322 1 NC_009900.1 cytochrome d ubiquinol oxidase subunit I 301322 cydA 5666084 cydA Rickettsia massiliae MTU5 cytochrome d ubiquinol oxidase subunit I YP_001499104.1 299952 D 416276 CDS YP_001499105.1 157964281 5666085 301330..302349 1 NC_009900.1 cytochrome d ubiquinol oxidase subunit II 302349 cydB 5666085 cydB Rickettsia massiliae MTU5 cytochrome d ubiquinol oxidase subunit II YP_001499105.1 301330 D 416276 CDS YP_001499106.1 157964282 5665612 302479..302793 1 NC_009900.1 antitoxin of toxin-antitoxin (TA) system StbD 302793 5665612 RMA_0298 Rickettsia massiliae MTU5 antitoxin of toxin-antitoxin (TA) system StbD YP_001499106.1 302479 D 416276 CDS YP_001499107.1 157964283 5665613 302804..303064 1 NC_009900.1 putative toxin of toxin-antitoxin (TA) system StbD 303064 5665613 RMA_0299 Rickettsia massiliae MTU5 putative toxin of toxin-antitoxin (TA) system StbD YP_001499107.1 302804 D 416276 CDS YP_001499108.1 157964284 5665614 303048..303905 1 NC_009900.1 Beta 1,4 glucosyltransferase 303905 lgtF 5665614 lgtF Rickettsia massiliae MTU5 Beta 1,4 glucosyltransferase YP_001499108.1 303048 D 416276 CDS YP_001499109.1 157964285 5665275 303907..305220 1 NC_009900.1 protease 305220 mpp 5665275 mpp Rickettsia massiliae MTU5 protease YP_001499109.1 303907 D 416276 CDS YP_001499110.1 157964286 5665276 305374..306084 1 NC_009900.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 306084 purC 5665276 purC Rickettsia massiliae MTU5 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_001499110.1 305374 D 416276 CDS YP_001499111.1 157964287 5665277 306306..307901 1 NC_009900.1 hypothetical protein 307901 5665277 RMA_0303 Rickettsia massiliae MTU5 hypothetical protein YP_001499111.1 306306 D 416276 CDS YP_001499112.1 157964288 5665599 307952..309907 1 NC_009900.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 309907 thrS 5665599 thrS Rickettsia massiliae MTU5 threonyl-tRNA synthetase YP_001499112.1 307952 D 416276 CDS YP_001499113.1 157964289 5665877 312622..313197 1 NC_009900.1 ABC transporter ATPase 313197 5665877 RMA_0307 Rickettsia massiliae MTU5 ABC transporter ATPase YP_001499113.1 312622 D 416276 CDS YP_001499114.1 157964290 5665878 complement(314386..314988) 1 NC_009900.1 hypothetical protein 314988 5665878 RMA_0308 Rickettsia massiliae MTU5 hypothetical protein YP_001499114.1 314386 R 416276 CDS YP_001499115.1 157964291 5665308 316202..317563 1 NC_009900.1 Type I secretion outer membrane protein TolC 317563 tolC 5665308 tolC Rickettsia massiliae MTU5 Type I secretion outer membrane protein TolC YP_001499115.1 316202 D 416276 CDS YP_001499116.1 157964292 5665309 317565..317951 1 NC_009900.1 hypothetical protein 317951 5665309 RMA_0313 Rickettsia massiliae MTU5 hypothetical protein YP_001499116.1 317565 D 416276 CDS YP_001499117.1 157964293 5664920 318146..319891 1 NC_009900.1 ankyrin repeat-containing protein 319891 5664920 RMA_0314 Rickettsia massiliae MTU5 ankyrin repeat-containing protein YP_001499117.1 318146 D 416276 CDS YP_001499118.1 157964294 5664921 320101..322089 1 NC_009900.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 322089 parE 5664921 parE Rickettsia massiliae MTU5 DNA topoisomerase IV subunit B YP_001499118.1 320101 D 416276 CDS YP_001499119.1 157964295 5664922 322089..323567 1 NC_009900.1 carboxyl-terminal protease 323567 ctp 5664922 ctp Rickettsia massiliae MTU5 carboxyl-terminal protease YP_001499119.1 322089 D 416276 CDS YP_001499120.1 157964296 5665814 323779..325275 1 NC_009900.1 histidine kinase sensor protein 325275 barA 5665814 barA Rickettsia massiliae MTU5 histidine kinase sensor protein YP_001499120.1 323779 D 416276 CDS YP_001499121.1 157964297 5665815 325326..326078 1 NC_009900.1 hypothetical protein 326078 5665815 RMA_0318 Rickettsia massiliae MTU5 hypothetical protein YP_001499121.1 325326 D 416276 CDS YP_001499122.1 157964298 5665816 326091..326756 1 NC_009900.1 hypothetical protein 326756 5665816 RMA_0319 Rickettsia massiliae MTU5 hypothetical protein YP_001499122.1 326091 D 416276 CDS YP_001499123.1 157964299 5665904 326746..328020 1 NC_009900.1 WD-40 repeat-containing protein 328020 5665904 RMA_0320 Rickettsia massiliae MTU5 WD-40 repeat-containing protein YP_001499123.1 326746 D 416276 CDS YP_001499124.1 157964300 5665905 328110..328580 1 NC_009900.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 328580 rplM 5665905 rplM Rickettsia massiliae MTU5 50S ribosomal protein L13 YP_001499124.1 328110 D 416276 CDS YP_001499125.1 157964301 5665851 328587..329066 1 NC_009900.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 329066 rpsI 5665851 rpsI Rickettsia massiliae MTU5 30S ribosomal protein S9 YP_001499125.1 328587 D 416276 CDS YP_001499126.1 157964302 5665195 329903..330346 1 NC_009900.1 transposase 330346 5665195 RMA_0323 Rickettsia massiliae MTU5 transposase YP_001499126.1 329903 D 416276 CDS YP_001499127.1 157964303 5664864 331134..331445 1 NC_009900.1 putative pterin-4-alpha-carbinolamine dehydratase 331445 5664864 RMA_0325 Rickettsia massiliae MTU5 putative pterin-4-alpha-carbinolamine dehydratase YP_001499127.1 331134 D 416276 CDS YP_001499128.1 157964304 5664865 331914..332243 1 NC_009900.1 hypothetical protein 332243 5664865 RMA_0326 Rickettsia massiliae MTU5 hypothetical protein YP_001499128.1 331914 D 416276 CDS YP_001499129.1 157964305 5664866 complement(332504..332992) 1 NC_009900.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 332992 nudH 5664866 nudH Rickettsia massiliae MTU5 dinucleoside polyphosphate hydrolase YP_001499129.1 332504 R 416276 CDS YP_001499130.1 157964306 5665957 complement(333014..334384) 1 NC_009900.1 involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; response regulator PleD 334384 pleD 5665957 pleD Rickettsia massiliae MTU5 response regulator PleD YP_001499130.1 333014 R 416276 CDS YP_001499131.1 157964307 5665958 334460..335026 1 NC_009900.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 335026 efp 5665958 efp Rickettsia massiliae MTU5 elongation factor P YP_001499131.1 334460 D 416276 CDS YP_001499132.1 157964308 5664969 335292..336038 1 NC_009900.1 extragenic suppressor protein suhB 336038 suhB 5664969 suhB Rickettsia massiliae MTU5 extragenic suppressor protein suhB YP_001499132.1 335292 D 416276 CDS YP_001499133.1 157964309 5664970 336098..336433 1 NC_009900.1 hypothetical protein 336433 5664970 RMA_0331 Rickettsia massiliae MTU5 hypothetical protein YP_001499133.1 336098 D 416276 CDS YP_001499134.1 157964310 5664971 336440..337162 1 NC_009900.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 337162 psd 5664971 psd Rickettsia massiliae MTU5 phosphatidylserine decarboxylase YP_001499134.1 336440 D 416276 CDS YP_001499135.1 157964311 5664917 337311..338078 1 NC_009900.1 CDP-diacylglycerol--serine O-phosphatidyltransferase 338078 pssA 5664917 pssA Rickettsia massiliae MTU5 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_001499135.1 337311 D 416276 CDS YP_001499136.1 157964312 5664918 338072..339139 1 NC_009900.1 multidrug resistance protein A 339139 emrA 5664918 emrA Rickettsia massiliae MTU5 multidrug resistance protein A YP_001499136.1 338072 D 416276 CDS YP_001499137.1 157964313 5664919 339464..339976 1 NC_009900.1 hypothetical protein 339976 5664919 RMA_0335 Rickettsia massiliae MTU5 hypothetical protein YP_001499137.1 339464 D 416276 CDS YP_001499138.1 157964314 5665519 complement(340105..340323) 1 NC_009900.1 hypothetical protein 340323 5665519 RMA_0336 Rickettsia massiliae MTU5 hypothetical protein YP_001499138.1 340105 R 416276 CDS YP_001499139.1 157964315 5665520 complement(340305..340547) 1 NC_009900.1 BolA-like protein 340547 bolA1 5665520 bolA1 Rickettsia massiliae MTU5 BolA-like protein YP_001499139.1 340305 R 416276 CDS YP_001499140.1 157964316 5665854 340602..341825 1 NC_009900.1 EAL domain-containing protein 341825 5665854 RMA_0338 Rickettsia massiliae MTU5 EAL domain-containing protein YP_001499140.1 340602 D 416276 CDS YP_001499141.1 157964317 5665855 342046..343503 1 NC_009900.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 343503 murC 5665855 murC Rickettsia massiliae MTU5 UDP-N-acetylmuramate--L-alanine ligase YP_001499141.1 342046 D 416276 CDS YP_001499142.1 157964318 5665856 343513..344490 1 NC_009900.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 344490 murB 5665856 murB Rickettsia massiliae MTU5 UDP-N-acetylenolpyruvoylglucosamine reductase YP_001499142.1 343513 D 416276 CDS YP_001499143.1 157964319 5665609 344733..345698 1 NC_009900.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 345698 ddl 5665609 ddl Rickettsia massiliae MTU5 D-alanine--D-alanine ligase YP_001499143.1 344733 D 416276 CDS YP_001499144.1 157964320 5665610 345692..346498 1 NC_009900.1 cell division protein ftsQ 346498 ftsQ 5665610 ftsQ Rickettsia massiliae MTU5 cell division protein ftsQ YP_001499144.1 345692 D 416276 CDS YP_001499145.1 157964321 5665611 346627..347862 1 NC_009900.1 cell division protein ftsA 347862 ftsA 5665611 ftsA Rickettsia massiliae MTU5 cell division protein ftsA YP_001499145.1 346627 D 416276 CDS YP_001499146.1 157964322 5665016 complement(348008..348484) 1 NC_009900.1 membrane protease regulatory membrane protein 348484 5665016 RMA_0344 Rickettsia massiliae MTU5 membrane protease regulatory membrane protein YP_001499146.1 348008 R 416276 CDS YP_001499147.1 157964323 5665017 complement(348468..348995) 1 NC_009900.1 cytochrome c 348995 cycM 5665017 cycM Rickettsia massiliae MTU5 cytochrome c YP_001499147.1 348468 R 416276 CDS YP_001499148.1 157964324 5665106 349104..350180 1 NC_009900.1 hypothetical protein 350180 5665106 RMA_0346 Rickettsia massiliae MTU5 hypothetical protein YP_001499148.1 349104 D 416276 CDS YP_001499149.1 157964325 5665107 complement(350189..351091) 1 NC_009900.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 351091 lpxC 5665107 lpxC Rickettsia massiliae MTU5 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_001499149.1 350189 R 416276 CDS YP_001499150.1 157964326 5665108 complement(351439..352587) 1 NC_009900.1 hypothetical protein 352587 5665108 RMA_0348 Rickettsia massiliae MTU5 hypothetical protein YP_001499150.1 351439 R 416276 CDS YP_001499151.1 157964327 5665888 353015..355087 1 NC_009900.1 ribonuclease E 355087 rne 5665888 rne Rickettsia massiliae MTU5 ribonuclease E YP_001499151.1 353015 D 416276 CDS YP_001499152.1 157964328 5665889 355330..356349 1 NC_009900.1 cytochrome c oxidase assembly protein 356349 coxW 5665889 coxW Rickettsia massiliae MTU5 cytochrome c oxidase assembly protein YP_001499152.1 355330 D 416276 CDS YP_001499153.1 157964329 5665890 356353..357273 1 NC_009900.1 ribosomal large subunit pseudouridine synthase 357273 rluA1 5665890 rluA1 Rickettsia massiliae MTU5 ribosomal large subunit pseudouridine synthase YP_001499153.1 356353 D 416276 CDS YP_001499154.1 157964330 5665997 357380..358609 1 NC_009900.1 penicillin-binding protein 4* 358609 pbpE 5665997 pbpE Rickettsia massiliae MTU5 penicillin-binding protein 4* YP_001499154.1 357380 D 416276 CDS YP_001499155.1 157964331 5665998 358691..359569 1 NC_009900.1 exodeoxyribonuclease III 359569 xth1 5665998 xth1 Rickettsia massiliae MTU5 exodeoxyribonuclease III YP_001499155.1 358691 D 416276 CDS YP_001499156.1 157964332 5666075 359592..360572 1 NC_009900.1 pyruvate dehydrogenase e1 component subunit alpha 360572 pdhA 5666075 pdhA Rickettsia massiliae MTU5 pyruvate dehydrogenase e1 component subunit alpha YP_001499156.1 359592 D 416276 CDS YP_001499157.1 157964333 5666076 360733..361713 1 NC_009900.1 catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acyltransferase within the complex. The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2); it contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase; pyruvate dehydrogenase subunit beta 361713 pdhB 5666076 pdhB Rickettsia massiliae MTU5 pyruvate dehydrogenase subunit beta YP_001499157.1 360733 D 416276 CDS YP_001499158.1 157964334 5666077 complement(361851..363680) 1 NC_009900.1 GTP-binding protein TypA 363680 typA 5666077 typA Rickettsia massiliae MTU5 GTP-binding protein TypA YP_001499158.1 361851 R 416276 CDS YP_001499159.1 157964335 5665744 364838..365392 1 NC_009900.1 Outer membrane protein 365392 hlpA 5665744 hlpA Rickettsia massiliae MTU5 Outer membrane protein YP_001499159.1 364838 D 416276 CDS YP_001499160.1 157964336 5665745 365467..366918 1 NC_009900.1 catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 366918 icd 5665745 icd Rickettsia massiliae MTU5 isocitrate dehydrogenase YP_001499160.1 365467 D 416276 CDS YP_001499161.1 157964337 5665746 367024..367353 1 NC_009900.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit G 367353 5665746 RMA_0359 Rickettsia massiliae MTU5 putative monovalent cation/H+ antiporter subunit G YP_001499161.1 367024 D 416276 CDS YP_001499162.1 157964338 5666199 367399..368490 1 NC_009900.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit B 368490 mnhB 5666199 mnhB Rickettsia massiliae MTU5 putative monovalent cation/H+ antiporter subunit B YP_001499162.1 367399 D 416276 CDS YP_001499163.1 157964339 5666200 368477..369130 1 NC_009900.1 Heme exporter protein B 369130 ccmB 5666200 ccmB Rickettsia massiliae MTU5 Heme exporter protein B YP_001499163.1 368477 D 416276 CDS YP_001499164.1 157964340 5666186 369207..369665 1 NC_009900.1 hypothetical protein 369665 5666186 RMA_0362 Rickettsia massiliae MTU5 hypothetical protein YP_001499164.1 369207 D 416276 CDS YP_001499165.1 157964341 5666187 369687..370214 1 NC_009900.1 ubiquinol-cytochrome c reductase, iron-sulfur subunit 370214 petA 5666187 petA Rickettsia massiliae MTU5 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_001499165.1 369687 D 416276 CDS YP_001499166.1 157964342 5666188 370165..371418 1 NC_009900.1 cytochrome b 371418 petB 5666188 petB Rickettsia massiliae MTU5 cytochrome b YP_001499166.1 370165 D 416276 CDS YP_001499167.1 157964343 5666271 371536..371817 1 NC_009900.1 endo/excinuclease amino terminal domain-containing protein 371817 5666271 RMA_0365 Rickettsia massiliae MTU5 endo/excinuclease amino terminal domain-containing protein YP_001499167.1 371536 D 416276 CDS YP_001499168.1 157964344 5666272 371889..372698 1 NC_009900.1 cytochrome c1, heme protein 372698 fbcH 5666272 fbcH Rickettsia massiliae MTU5 cytochrome c1, heme protein YP_001499168.1 371889 D 416276 CDS YP_001499169.1 157964345 5666273 372989..373420 1 NC_009900.1 hypothetical protein 373420 5666273 RMA_0367 Rickettsia massiliae MTU5 hypothetical protein YP_001499169.1 372989 D 416276 CDS YP_001499170.1 157964346 5666268 373441..373983 1 NC_009900.1 small heat shock protein 373983 hspC1 5666268 hspC1 Rickettsia massiliae MTU5 small heat shock protein YP_001499170.1 373441 D 416276 CDS YP_001499171.1 157964347 5666269 complement(374250..374924) 1 NC_009900.1 hypothetical protein 374924 5666269 RMA_0369 Rickettsia massiliae MTU5 hypothetical protein YP_001499171.1 374250 R 416276 CDS YP_001499172.1 157964348 5666263 complement(375978..376991) 1 NC_009900.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 376991 prfB 5666263 prfB Rickettsia massiliae MTU5 peptide chain release factor 2 YP_001499172.1 375978 R 416276 CDS YP_001499173.1 157964349 5666264 377240..379054 1 NC_009900.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 379054 lepA 5666264 lepA Rickettsia massiliae MTU5 GTP-binding protein LepA YP_001499173.1 377240 D 416276 CDS YP_001499174.1 157964350 5666248 383223..383516 1 NC_009900.1 hypothetical protein 383516 5666248 RMA_0377 Rickettsia massiliae MTU5 hypothetical protein YP_001499174.1 383223 D 416276 CDS YP_001499175.1 157964351 5666244 386546..386869 1 NC_009900.1 hypothetical protein 386869 5666244 RMA_0382 Rickettsia massiliae MTU5 hypothetical protein YP_001499175.1 386546 D 416276 CDS YP_001499176.1 157964352 5666221 complement(389031..390149) 1 NC_009900.1 rod shape-determining protein RodA 390149 rodA 5666221 rodA Rickettsia massiliae MTU5 rod shape-determining protein RodA YP_001499176.1 389031 R 416276 CDS YP_001499177.1 157964353 5666222 complement(390350..392548) 1 NC_009900.1 protease II 392548 ptrB 5666222 ptrB Rickettsia massiliae MTU5 protease II YP_001499177.1 390350 R 416276 CDS YP_001499178.1 157964354 5665906 complement(392724..394268) 1 NC_009900.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 394268 nuoL3 5665906 nuoL3 Rickettsia massiliae MTU5 putative monovalent cation/H+ antiporter subunit D YP_001499178.1 392724 R 416276 CDS YP_001499179.1 157964355 5665907 complement(394264..394626) 1 NC_009900.1 toxin of toxin-antitoxin (TA) system VapC 394626 vapC1 5665907 vapC1 Rickettsia massiliae MTU5 toxin of toxin-antitoxin (TA) system VapC YP_001499179.1 394264 R 416276 CDS YP_001499180.1 157964356 5665908 complement(394678..394980) 1 NC_009900.1 antitoxin of toxin-antitoxin (TA) system VapB 394980 vapB1 5665908 vapB1 Rickettsia massiliae MTU5 antitoxin of toxin-antitoxin (TA) system VapB YP_001499180.1 394678 R 416276 CDS YP_001499181.1 157964357 5666008 complement(395135..396658) 1 NC_009900.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 396658 nuoL2 5666008 nuoL2 Rickettsia massiliae MTU5 putative monovalent cation/H+ antiporter subunit D YP_001499181.1 395135 R 416276 CDS YP_001499182.1 157964358 5666009 complement(396742..398043) 1 NC_009900.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 398043 nuoN2 5666009 nuoN2 Rickettsia massiliae MTU5 putative monovalent cation/H+ antiporter subunit D YP_001499182.1 396742 R 416276 CDS YP_001499183.1 157964359 5666010 complement(398040..398381) 1 NC_009900.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 398381 mnhC 5666010 mnhC Rickettsia massiliae MTU5 putative monovalent cation/H+ antiporter subunit C YP_001499183.1 398040 R 416276 CDS YP_001499184.1 157964360 5665830 complement(398473..399243) 1 NC_009900.1 VirB9 399243 virB9-1 5665830 virB9-1 Rickettsia massiliae MTU5 VirB9 YP_001499184.1 398473 R 416276 CDS YP_001499185.1 157964361 5665831 complement(399227..399952) 1 NC_009900.1 virulence protein 399952 virB8-1 5665831 virB8-1 Rickettsia massiliae MTU5 virulence protein YP_001499185.1 399227 R 416276 CDS YP_001499186.1 157964362 5665832 400381..400569 1 NC_009900.1 hypothetical protein 400569 5665832 RMA_0397 Rickettsia massiliae MTU5 hypothetical protein YP_001499186.1 400381 D 416276 CDS YP_001499187.1 157964363 5666070 400622..401353 1 NC_009900.1 virulence protein 401353 virB8-2 5666070 virB8-2 Rickettsia massiliae MTU5 virulence protein YP_001499187.1 400622 D 416276 CDS YP_001499188.1 157964364 5666071 401340..401813 1 NC_009900.1 VirB9 401813 virB9-2 5666071 virB9-2 Rickettsia massiliae MTU5 VirB9 YP_001499188.1 401340 D 416276 CDS YP_001499189.1 157964365 5666072 401997..403439 1 NC_009900.1 VirB10 403439 virB10 5666072 virB10 Rickettsia massiliae MTU5 VirB10 YP_001499189.1 401997 D 416276 CDS YP_001499190.1 157964366 5665915 403397..404440 1 NC_009900.1 type IV secretion system ATPase VirB11 404440 virB11 5665915 virB11 Rickettsia massiliae MTU5 type IV secretion system ATPase VirB11 YP_001499190.1 403397 D 416276 CDS YP_001499191.1 157964367 5665916 404607..406382 1 NC_009900.1 type IV secretion system protein VirB8 406382 virD4 5665916 virD4 Rickettsia massiliae MTU5 type IV secretion system protein VirB8 YP_001499191.1 404607 D 416276 CDS YP_001499192.1 157964368 5665917 406392..407804 1 NC_009900.1 guanosine pentaphosphate phosphohydrolase 407804 gppA 5665917 gppA Rickettsia massiliae MTU5 guanosine pentaphosphate phosphohydrolase YP_001499192.1 406392 D 416276 CDS YP_001499193.1 157964369 5666050 complement(408046..408861) 1 NC_009900.1 hypothetical protein 408861 5666050 RMA_0404 Rickettsia massiliae MTU5 hypothetical protein YP_001499193.1 408046 R 416276 CDS YP_001499194.1 157964370 5665208 410787..411671 1 NC_009900.1 hypothetical protein 411671 5665208 RMA_0407 Rickettsia massiliae MTU5 hypothetical protein YP_001499194.1 410787 D 416276 CDS YP_001499195.1 157964371 5665209 411628..412479 1 NC_009900.1 hypothetical protein 412479 5665209 RMA_0408 Rickettsia massiliae MTU5 hypothetical protein YP_001499195.1 411628 D 416276 CDS YP_001499196.1 157964372 5665210 412476..413258 1 NC_009900.1 3'(2'),5'-bisphosphate nucleotidase 413258 cysQ 5665210 cysQ Rickettsia massiliae MTU5 3'(2'),5'-bisphosphate nucleotidase YP_001499196.1 412476 D 416276 CDS YP_001499197.1 157964373 5665571 complement(413398..416073) 1 NC_009900.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 416073 mutS 5665571 mutS Rickettsia massiliae MTU5 DNA mismatch repair protein MutS YP_001499197.1 413398 R 416276 CDS YP_001499198.1 157964374 5665572 complement(416244..416693) 1 NC_009900.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B 416693 lacA 5665572 lacA Rickettsia massiliae MTU5 ribose-5-phosphate isomerase B YP_001499198.1 416244 R 416276 CDS YP_001499199.1 157964375 5665573 416730..417404 1 NC_009900.1 membrane-bound metallopeptidase 417404 nlpD1 5665573 nlpD1 Rickettsia massiliae MTU5 membrane-bound metallopeptidase YP_001499199.1 416730 D 416276 CDS YP_001499200.1 157964376 5665166 418295..419188 1 NC_009900.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 419188 thyX 5665166 thyX Rickettsia massiliae MTU5 FAD-dependent thymidylate synthase YP_001499200.1 418295 D 416276 CDS YP_001499201.1 157964377 5666058 419263..420597 1 NC_009900.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 420597 tolB 5666058 tolB Rickettsia massiliae MTU5 translocation protein TolB YP_001499201.1 419263 D 416276 CDS YP_001499202.1 157964378 5666059 complement(420752..421684) 1 NC_009900.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 421684 rpoH 5666059 rpoH Rickettsia massiliae MTU5 RNA polymerase factor sigma-32 YP_001499202.1 420752 R 416276 CDS YP_001499203.1 157964379 5666060 421719..422288 1 NC_009900.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 422288 cox11 5666060 cox11 Rickettsia massiliae MTU5 cytochrome C oxidase assembly protein YP_001499203.1 421719 D 416276 CDS YP_001499204.1 157964380 5665118 complement(422504..423388) 1 NC_009900.1 hypothetical protein 423388 5665118 RMA_0419 Rickettsia massiliae MTU5 hypothetical protein YP_001499204.1 422504 R 416276 CDS YP_001499205.1 157964381 5665119 423627..424751 1 NC_009900.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 424751 mnmA 5665119 mnmA Rickettsia massiliae MTU5 tRNA-specific 2-thiouridylase MnmA YP_001499205.1 423627 D 416276 CDS YP_001499206.1 157964382 5665120 424877..426277 1 NC_009900.1 cationic amino acid transporter-1 426277 atrC1 5665120 atrC1 Rickettsia massiliae MTU5 cationic amino acid transporter-1 YP_001499206.1 424877 D 416276 CDS YP_001499207.1 157964383 5665462 426346..427671 1 NC_009900.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 427671 hisS 5665462 hisS Rickettsia massiliae MTU5 histidyl-tRNA synthetase YP_001499207.1 426346 D 416276 CDS YP_001499208.1 157964384 5666123 complement(431061..431510) 1 NC_009900.1 hypothetical protein 431510 5666123 RMA_0429 Rickettsia massiliae MTU5 hypothetical protein YP_001499208.1 431061 R 416276 CDS YP_001499209.1 157964385 5664968 433910..434644 1 NC_009900.1 hypothetical protein 434644 tolQ 5664968 tolQ Rickettsia massiliae MTU5 hypothetical protein YP_001499209.1 433910 D 416276 CDS YP_001499210.1 157964386 5665202 434644..435075 1 NC_009900.1 hypothetical protein 435075 tolR 5665202 tolR Rickettsia massiliae MTU5 hypothetical protein YP_001499210.1 434644 D 416276 CDS YP_001499211.1 157964387 5665203 435053..436039 1 NC_009900.1 links inner and outer membranes; periplasmic protein TonB 436039 5665203 RMA_0434 Rickettsia massiliae MTU5 periplasmic protein TonB YP_001499211.1 435053 D 416276 CDS YP_001499212.1 157964388 5665204 437045..437752 1 NC_009900.1 guanosine polyphosphate pyrophosphohydrolase/synthetase 437752 spoT2 5665204 spoT2 Rickettsia massiliae MTU5 guanosine polyphosphate pyrophosphohydrolase/synthetase YP_001499212.1 437045 D 416276 CDS YP_001499213.1 157964389 5665002 complement(437703..439034) 1 NC_009900.1 proline/betaine transporter 439034 proP2 5665002 proP2 Rickettsia massiliae MTU5 proline/betaine transporter YP_001499213.1 437703 R 416276 CDS YP_001499214.1 157964390 5665003 complement(439168..440706) 1 NC_009900.1 HlyD family secretion protein 440706 5665003 RMA_0437 Rickettsia massiliae MTU5 HlyD family secretion protein YP_001499214.1 439168 R 416276 CDS YP_001499215.1 157964391 5665004 complement(440888..442669) 1 NC_009900.1 alkaline protease secretion ATP-binding protein AprD 442669 aprD 5665004 aprD Rickettsia massiliae MTU5 alkaline protease secretion ATP-binding protein AprD YP_001499215.1 440888 R 416276 CDS YP_001499216.1 157964392 5665560 complement(442656..443675) 1 NC_009900.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 443675 asd 5665560 asd Rickettsia massiliae MTU5 aspartate-semialdehyde dehydrogenase YP_001499216.1 442656 R 416276 CDS YP_001499217.1 157964393 5665561 complement(443665..444063) 1 NC_009900.1 protein kinase C inhibitor 1 444063 pkcI 5665561 pkcI Rickettsia massiliae MTU5 protein kinase C inhibitor 1 YP_001499217.1 443665 R 416276 CDS YP_001499218.1 157964394 5665562 complement(444196..444576) 1 NC_009900.1 hypothetical protein 444576 5665562 RMA_0441 Rickettsia massiliae MTU5 hypothetical protein YP_001499218.1 444196 R 416276 CDS YP_001499219.1 157964395 5664856 444803..445375 1 NC_009900.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 445375 hslV 5664856 hslV Rickettsia massiliae MTU5 ATP-dependent protease peptidase subunit YP_001499219.1 444803 D 416276 CDS YP_001499220.1 157964396 5664857 445372..446724 1 NC_009900.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 446724 hslU 5664857 hslU Rickettsia massiliae MTU5 ATP-dependent protease ATP-binding subunit HslU YP_001499220.1 445372 D 416276 CDS YP_001499221.1 157964397 5665300 449075..449518 1 NC_009900.1 transposase 449518 5665300 RMA_0449 Rickettsia massiliae MTU5 transposase YP_001499221.1 449075 D 416276 CDS YP_001499222.1 157964398 5665763 450072..451412 1 NC_009900.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 451412 lpxB 5665763 lpxB Rickettsia massiliae MTU5 lipid-A-disaccharide synthase YP_001499222.1 450072 D 416276 CDS YP_001499223.1 157964399 5665764 complement(451409..451684) 1 NC_009900.1 hypothetical protein 451684 5665764 RMA_0453 Rickettsia massiliae MTU5 hypothetical protein YP_001499223.1 451409 R 416276 CDS YP_001499224.1 157964400 5666038 452008..453060 1 NC_009900.1 aminodeoxychorismate lyase 453060 5666038 RMA_0454 Rickettsia massiliae MTU5 aminodeoxychorismate lyase YP_001499224.1 452008 D 416276 CDS YP_001499225.1 157964401 5666039 453176..453514 1 NC_009900.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 453514 cyaY 5666039 cyaY Rickettsia massiliae MTU5 frataxin-like protein YP_001499225.1 453176 D 416276 CDS YP_001499226.1 157964402 5666040 453652..454323 1 NC_009900.1 hypothetical protein 454323 5666040 RMA_0456 Rickettsia massiliae MTU5 hypothetical protein YP_001499226.1 453652 D 416276 CDS YP_001499227.1 157964403 5665747 454611..455288 1 NC_009900.1 hypothetical protein 455288 5665747 RMA_0457 Rickettsia massiliae MTU5 hypothetical protein YP_001499227.1 454611 D 416276 CDS YP_001499228.1 157964404 5665749 455924..456367 1 NC_009900.1 transposase 456367 5665749 RMA_0459 Rickettsia massiliae MTU5 transposase YP_001499228.1 455924 D 416276 CDS YP_001499229.1 157964405 5665153 457153..457536 1 NC_009900.1 hypothetical protein 457536 5665153 RMA_0461 Rickettsia massiliae MTU5 hypothetical protein YP_001499229.1 457153 D 416276 CDS YP_001499230.1 157964406 5665154 complement(457619..458962) 1 NC_009900.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 458962 gltX 5665154 gltX Rickettsia massiliae MTU5 glutamyl-tRNA synthetase YP_001499230.1 457619 R 416276 CDS YP_001499231.1 157964407 5665475 complement(459071..461401) 1 NC_009900.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 461401 topA 5665475 topA Rickettsia massiliae MTU5 DNA topoisomerase I YP_001499231.1 459071 R 416276 CDS YP_001499232.1 157964408 5665510 complement(462695..463303) 1 NC_009900.1 thioredoxin peroxidase 1 463303 tdpX1 5665510 tdpX1 Rickettsia massiliae MTU5 thioredoxin peroxidase 1 YP_001499232.1 462695 R 416276 CDS YP_001499233.1 157964409 5665296 complement(463379..464317) 1 NC_009900.1 membrane protease subunit stomatin/prohibitin-like protein 464317 hflC1 5665296 hflC1 Rickettsia massiliae MTU5 membrane protease subunit stomatin/prohibitin-like protein YP_001499233.1 463379 R 416276 CDS YP_001499234.1 157964410 5665297 complement(464687..466255) 1 NC_009900.1 putative membrane-associated metal-dependent hydrolase 466255 5665297 RMA_0470 Rickettsia massiliae MTU5 putative membrane-associated metal-dependent hydrolase YP_001499234.1 464687 R 416276 CDS YP_001499235.1 157964411 5665298 466258..466755 1 NC_009900.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 466755 5665298 RMA_0471 Rickettsia massiliae MTU5 Holliday junction resolvase-like protein YP_001499235.1 466258 D 416276 CDS YP_001499236.1 157964412 5664884 466911..467273 1 NC_009900.1 plasmid maintenance system antidote protein 467273 5664884 RMA_0472 Rickettsia massiliae MTU5 plasmid maintenance system antidote protein YP_001499236.1 466911 D 416276 CDS YP_001499237.1 157964413 5664885 467359..468225 1 NC_009900.1 dTDP-4-dehydrorhamnose reductase 468225 5664885 RMA_0473 Rickettsia massiliae MTU5 dTDP-4-dehydrorhamnose reductase YP_001499237.1 467359 D 416276 CDS YP_001499238.1 157964414 5664886 468420..469448 1 NC_009900.1 putative nucleoside-diphosphate sugar epimerase CapD 469448 capD 5664886 capD Rickettsia massiliae MTU5 putative nucleoside-diphosphate sugar epimerase CapD YP_001499238.1 468420 D 416276 CDS YP_001499239.1 157964415 5664938 469441..470574 1 NC_009900.1 UDP-N-acetylglucosamine 2-epimerase 470574 rffE 5664938 rffE Rickettsia massiliae MTU5 UDP-N-acetylglucosamine 2-epimerase YP_001499239.1 469441 D 416276 CDS YP_001499240.1 157964416 5664939 470534..471880 1 NC_009900.1 hypothetical protein 471880 5664939 RMA_0476 Rickettsia massiliae MTU5 hypothetical protein YP_001499240.1 470534 D 416276 CDS YP_001499241.1 157964417 5664940 471896..472279 1 NC_009900.1 hypothetical protein 472279 5664940 RMA_0477 Rickettsia massiliae MTU5 hypothetical protein YP_001499241.1 471896 D 416276 CDS YP_001499242.1 157964418 5665290 472695..474545 1 NC_009900.1 glycosyltransferase 474545 5665290 RMA_0478 Rickettsia massiliae MTU5 glycosyltransferase YP_001499242.1 472695 D 416276 CDS YP_001499243.1 157964419 5665291 complement(474550..475548) 1 NC_009900.1 RND family efflux transporter MFP subunit 475548 5665291 RMA_0479 Rickettsia massiliae MTU5 RND family efflux transporter MFP subunit YP_001499243.1 474550 R 416276 CDS YP_001499244.1 157964420 5665292 complement(475637..476437) 1 NC_009900.1 hypothetical protein 476437 5665292 RMA_0480 Rickettsia massiliae MTU5 hypothetical protein YP_001499244.1 475637 R 416276 CDS YP_001499245.1 157964421 5665345 complement(476441..477208) 1 NC_009900.1 putative hydrolase/acyltransferase 477208 5665345 RMA_0481 Rickettsia massiliae MTU5 putative hydrolase/acyltransferase YP_001499245.1 476441 R 416276 CDS YP_001499246.1 157964422 5665346 477241..478413 1 NC_009900.1 glycosyltransferase 478413 5665346 RMA_0482 Rickettsia massiliae MTU5 glycosyltransferase YP_001499246.1 477241 D 416276 CDS YP_001499247.1 157964423 5665347 complement(478937..479530) 1 NC_009900.1 ATPase components of ABC transporters 479530 5665347 RMA_0483 Rickettsia massiliae MTU5 ATPase components of ABC transporters YP_001499247.1 478937 R 416276 CDS YP_001499248.1 157964424 5665018 complement(480964..481647) 1 NC_009900.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 481647 rpsD 5665018 rpsD Rickettsia massiliae MTU5 30S ribosomal protein S4 YP_001499248.1 480964 R 416276 CDS YP_001499249.1 157964425 5665019 481690..482616 1 NC_009900.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 482616 cyoB 5665019 cyoB Rickettsia massiliae MTU5 protoheme IX farnesyltransferase YP_001499249.1 481690 D 416276 CDS YP_001499250.1 157964426 5665263 483780..484163 1 NC_009900.1 hypothetical protein 484163 5665263 RMA_0487 Rickettsia massiliae MTU5 hypothetical protein YP_001499250.1 483780 D 416276 CDS YP_001499251.1 157964427 5665264 complement(485011..487536) 1 NC_009900.1 Outer membrane assembly protein 487536 asmA 5665264 asmA Rickettsia massiliae MTU5 Outer membrane assembly protein YP_001499251.1 485011 R 416276 CDS YP_001499252.1 157964428 5665265 complement(487858..488355) 1 NC_009900.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 488355 rimM 5665265 rimM Rickettsia massiliae MTU5 16S rRNA-processing protein RimM YP_001499252.1 487858 R 416276 CDS YP_001499253.1 157964429 5665670 488370..491048 1 NC_009900.1 hypothetical protein 491048 5665670 RMA_0490 Rickettsia massiliae MTU5 hypothetical protein YP_001499253.1 488370 D 416276 CDS YP_001499254.1 157964430 5665671 491062..491304 1 NC_009900.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 491304 xseB 5665671 xseB Rickettsia massiliae MTU5 exodeoxyribonuclease VII small subunit YP_001499254.1 491062 D 416276 CDS YP_001499255.1 157964431 5665547 complement(492662..493225) 1 NC_009900.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 493225 mpg 5665547 mpg Rickettsia massiliae MTU5 3-methyladenine DNA glycosylase YP_001499255.1 492662 R 416276 CDS YP_001499256.1 157964432 5665789 complement(493497..493745) 1 NC_009900.1 hypothetical protein 493745 5665789 RMA_0498 Rickettsia massiliae MTU5 hypothetical protein YP_001499256.1 493497 R 416276 CDS YP_001499257.1 157964433 5665790 complement(493738..494241) 1 NC_009900.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 494241 nuoE 5665790 nuoE Rickettsia massiliae MTU5 NADH dehydrogenase subunit E YP_001499257.1 493738 R 416276 CDS YP_001499258.1 157964434 5665732 complement(494661..495929) 1 NC_009900.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 495929 nuoD 5665732 nuoD Rickettsia massiliae MTU5 NADH dehydrogenase subunit D YP_001499258.1 494661 R 416276 CDS YP_001499259.1 157964435 5665733 complement(495935..496663) 1 NC_009900.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C 496663 nuoC 5665733 nuoC Rickettsia massiliae MTU5 NADH dehydrogenase subunit C YP_001499259.1 495935 R 416276 CDS YP_001499260.1 157964436 5665734 complement(496641..497165) 1 NC_009900.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 497165 nuoB 5665734 nuoB Rickettsia massiliae MTU5 NADH dehydrogenase subunit B YP_001499260.1 496641 R 416276 CDS YP_001499261.1 157964437 5666137 complement(497170..497703) 1 NC_009900.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 497703 nuoA 5666137 nuoA Rickettsia massiliae MTU5 NADH dehydrogenase subunit A YP_001499261.1 497170 R 416276 CDS YP_001499262.1 157964438 5666138 complement(497700..498938) 1 NC_009900.1 putative lipid A core - O-antigen ligase 498938 rfaL 5666138 rfaL Rickettsia massiliae MTU5 putative lipid A core - O-antigen ligase YP_001499262.1 497700 R 416276 CDS YP_001499263.1 157964439 5666280 complement(498939..499427) 1 NC_009900.1 hypothetical protein 499427 5666280 RMA_0506 Rickettsia massiliae MTU5 hypothetical protein YP_001499263.1 498939 R 416276 CDS YP_001499264.1 157964440 5665270 501218..502138 1 NC_009900.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 502138 xerD 5665270 xerD Rickettsia massiliae MTU5 site-specific tyrosine recombinase XerD YP_001499264.1 501218 D 416276 CDS YP_001499265.1 157964441 5665446 502214..503230 1 NC_009900.1 hypothetical protein 503230 5665446 RMA_0510 Rickettsia massiliae MTU5 hypothetical protein YP_001499265.1 502214 D 416276 CDS YP_001499266.1 157964442 5665447 503341..504519 1 NC_009900.1 hypothetical protein 504519 5665447 RMA_0511 Rickettsia massiliae MTU5 hypothetical protein YP_001499266.1 503341 D 416276 CDS YP_001499267.1 157964443 5666208 complement(504708..505490) 1 NC_009900.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 505490 fabI 5666208 fabI Rickettsia massiliae MTU5 enoyl-(acyl carrier protein) reductase YP_001499267.1 504708 R 416276 CDS YP_001499268.1 157964444 5666209 505560..507083 1 NC_009900.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 507083 lnt 5666209 lnt Rickettsia massiliae MTU5 apolipoprotein N-acyltransferase YP_001499268.1 505560 D 416276 CDS YP_001499269.1 157964445 5666260 507756..508577 1 NC_009900.1 negative regulator of beta-lactamase expression 508577 ampD1 5666260 ampD1 Rickettsia massiliae MTU5 negative regulator of beta-lactamase expression YP_001499269.1 507756 D 416276 CDS YP_001499270.1 157964446 5665730 complement(512714..513256) 1 NC_009900.1 disulfide bond formation protein DsbB 513256 dsbB 5665730 dsbB Rickettsia massiliae MTU5 disulfide bond formation protein DsbB YP_001499270.1 512714 R 416276 CDS YP_001499271.1 157964447 5665731 513413..514981 1 NC_009900.1 class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase 514981 lysK 5665731 lysK Rickettsia massiliae MTU5 lysyl-tRNA synthetase YP_001499271.1 513413 D 416276 CDS YP_001499272.1 157964448 5665254 515111..516043 1 NC_009900.1 putative permease 516043 5665254 RMA_0526 Rickettsia massiliae MTU5 putative permease YP_001499272.1 515111 D 416276 CDS YP_001499273.1 157964449 5665255 516095..518485 1 NC_009900.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 518485 tme 5665255 tme Rickettsia massiliae MTU5 malic enzyme YP_001499273.1 516095 D 416276 CDS YP_001499274.1 157964450 5665625 complement(519598..520011) 1 NC_009900.1 hypothetical protein 520011 5665625 RMA_0530 Rickettsia massiliae MTU5 hypothetical protein YP_001499274.1 519598 R 416276 CDS YP_001499275.1 157964451 5665348 complement(519977..520264) 1 NC_009900.1 AbrB family transcriptional regulator 520264 5665348 RMA_0531 Rickettsia massiliae MTU5 AbrB family transcriptional regulator YP_001499275.1 519977 R 416276 CDS YP_001499276.1 157964452 5665349 520419..521675 1 NC_009900.1 proline/betaine transporter 521675 proP3 5665349 proP3 Rickettsia massiliae MTU5 proline/betaine transporter YP_001499276.1 520419 D 416276 CDS YP_001499277.1 157964453 5665367 complement(524392..525354) 1 NC_009900.1 Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 525354 mdh 5665367 mdh Rickettsia massiliae MTU5 malate dehydrogenase YP_001499277.1 524392 R 416276 CDS YP_001499278.1 157964454 5665324 525562..525960 1 NC_009900.1 transposase 525960 5665324 RMA_0537 Rickettsia massiliae MTU5 transposase YP_001499278.1 525562 D 416276 CDS YP_001499279.1 157964455 5665325 complement(525986..527107) 1 NC_009900.1 transposase 527107 5665325 RMA_0538 Rickettsia massiliae MTU5 transposase YP_001499279.1 525986 R 416276 CDS YP_001499280.1 157964456 5664914 complement(528523..530049) 1 NC_009900.1 ATP/ADP translocase 530049 tlc2 5664914 tlc2 Rickettsia massiliae MTU5 ATP/ADP translocase YP_001499280.1 528523 R 416276 CDS YP_001499281.1 157964457 5664915 complement(530258..531877) 1 NC_009900.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 531877 pyrG 5664915 pyrG Rickettsia massiliae MTU5 CTP synthetase YP_001499281.1 530258 R 416276 CDS YP_001499282.1 157964458 5664916 complement(531874..532614) 1 NC_009900.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 532614 kdsB 5664916 kdsB Rickettsia massiliae MTU5 3-deoxy-manno-octulosonate cytidylyltransferase YP_001499282.1 531874 R 416276 CDS YP_001499283.1 157964459 5664998 complement(533372..533683) 1 NC_009900.1 ADP-ribose pyrophosphatase MutT 533683 mutT 5664998 mutT Rickettsia massiliae MTU5 ADP-ribose pyrophosphatase MutT YP_001499283.1 533372 R 416276 CDS YP_001499284.1 157964460 5665015 533817..535403 1 NC_009900.1 hypothetical protein 535403 5665015 RMA_0544 Rickettsia massiliae MTU5 hypothetical protein YP_001499284.1 533817 D 416276 CDS YP_001499285.1 157964461 5665257 535396..535965 1 NC_009900.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 535965 folE 5665257 folE Rickettsia massiliae MTU5 GTP cyclohydrolase I YP_001499285.1 535396 D 416276 CDS YP_001499286.1 157964462 5665258 536098..537411 1 NC_009900.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 537411 proS 5665258 proS Rickettsia massiliae MTU5 prolyl-tRNA synthetase YP_001499286.1 536098 D 416276 CDS YP_001499287.1 157964463 5665259 537616..538587 1 NC_009900.1 cell filamentation protein Fic 538587 5665259 RMA_0547 Rickettsia massiliae MTU5 cell filamentation protein Fic YP_001499287.1 537616 D 416276 CDS YP_001499288.1 157964464 5665833 538646..538984 1 NC_009900.1 hypothetical protein 538984 5665833 RMA_0548 Rickettsia massiliae MTU5 hypothetical protein YP_001499288.1 538646 D 416276 CDS YP_001499289.1 157964465 5665834 538965..539603 1 NC_009900.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 539603 ruvA 5665834 ruvA Rickettsia massiliae MTU5 Holliday junction DNA helicase RuvA YP_001499289.1 538965 D 416276 CDS YP_001499290.1 157964466 5665835 540774..541835 1 NC_009900.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 541835 ruvB 5665835 ruvB Rickettsia massiliae MTU5 Holliday junction DNA helicase RuvB YP_001499290.1 540774 D 416276 CDS YP_001499291.1 157964467 5665384 541783..543591 1 NC_009900.1 multidrug resistance protein 543591 msbA1 5665384 msbA1 Rickettsia massiliae MTU5 multidrug resistance protein YP_001499291.1 541783 D 416276 CDS YP_001499292.1 157964468 5665385 543764..545014 1 NC_009900.1 AmpG protein 545014 ampG4 5665385 ampG4 Rickettsia massiliae MTU5 AmpG protein YP_001499292.1 543764 D 416276 CDS YP_001499293.1 157964469 5665386 545173..546114 1 NC_009900.1 penicillin-binding protein dacF 546114 dacF 5665386 dacF Rickettsia massiliae MTU5 penicillin-binding protein dacF YP_001499293.1 545173 D 416276 CDS YP_001499294.1 157964470 5665549 complement(546284..547264) 1 NC_009900.1 rare lipoprotein A 547264 rlpA 5665549 rlpA Rickettsia massiliae MTU5 rare lipoprotein A YP_001499294.1 546284 R 416276 CDS YP_001499295.1 157964471 5665550 complement(547224..547847) 1 NC_009900.1 putative periplasmic or secreted lipoprotein 547847 osmY 5665550 osmY Rickettsia massiliae MTU5 putative periplasmic or secreted lipoprotein YP_001499295.1 547224 R 416276 CDS YP_001499296.1 157964472 5665551 complement(548049..548591) 1 NC_009900.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 548591 ispZ 5665551 ispZ Rickettsia massiliae MTU5 intracellular septation protein A YP_001499296.1 548049 R 416276 CDS YP_001499297.1 157964473 5665709 complement(548616..549473) 1 NC_009900.1 FTR1 family protein 549473 5665709 RMA_0557 Rickettsia massiliae MTU5 FTR1 family protein YP_001499297.1 548616 R 416276 CDS YP_001499298.1 157964474 5665710 complement(549474..549914) 1 NC_009900.1 hypothetical protein 549914 5665710 RMA_0558 Rickettsia massiliae MTU5 hypothetical protein YP_001499298.1 549474 R 416276 CDS YP_001499299.1 157964475 5665646 complement(550060..551100) 1 NC_009900.1 hypothetical protein 551100 5665646 RMA_0559 Rickettsia massiliae MTU5 hypothetical protein YP_001499299.1 550060 R 416276 CDS YP_001499300.1 157964476 5665647 551195..551821 1 NC_009900.1 protocatechuate-3,4-dioxygenase subunit beta 551821 5665647 RMA_0560 Rickettsia massiliae MTU5 protocatechuate-3,4-dioxygenase subunit beta YP_001499300.1 551195 D 416276 CDS YP_001499301.1 157964477 5665648 552011..552688 1 NC_009900.1 Thiol:disulfide interchange protein tlpA 552688 tlpA 5665648 tlpA Rickettsia massiliae MTU5 Thiol:disulfide interchange protein tlpA YP_001499301.1 552011 D 416276 CDS YP_001499302.1 157964478 5665695 552838..553752 1 NC_009900.1 signal peptide peptidase SppA 553752 sppA1 5665695 sppA1 Rickettsia massiliae MTU5 signal peptide peptidase SppA YP_001499302.1 552838 D 416276 CDS YP_001499303.1 157964479 5665696 553754..554200 1 NC_009900.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 554200 dut 5665696 dut Rickettsia massiliae MTU5 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_001499303.1 553754 D 416276 CDS YP_001499304.1 157964480 5665697 554411..556384 1 NC_009900.1 soluble lytic murein transglycosylase precursor 556384 mltE1 5665697 mltE1 Rickettsia massiliae MTU5 soluble lytic murein transglycosylase precursor YP_001499304.1 554411 D 416276 CDS YP_001499305.1 157964481 5665167 556455..557435 1 NC_009900.1 hypothetical protein 557435 5665167 RMA_0565 Rickettsia massiliae MTU5 hypothetical protein YP_001499305.1 556455 D 416276 CDS YP_001499306.1 157964482 5665168 557639..558595 1 NC_009900.1 microcin C7 self-immunity protein 558595 mccF 5665168 mccF Rickettsia massiliae MTU5 microcin C7 self-immunity protein YP_001499306.1 557639 D 416276 CDS YP_001499307.1 157964483 5665169 complement(558818..561358) 1 NC_009900.1 endonuclease 561358 5665169 RMA_0567 Rickettsia massiliae MTU5 endonuclease YP_001499307.1 558818 R 416276 CDS YP_001499308.1 157964484 5665499 561576..561866 1 NC_009900.1 hypothetical protein 561866 5665499 RMA_0568 Rickettsia massiliae MTU5 hypothetical protein YP_001499308.1 561576 D 416276 CDS YP_001499309.1 157964485 5665500 complement(561899..562627) 1 NC_009900.1 putative glutamine amidotransferase 562627 5665500 RMA_0569 Rickettsia massiliae MTU5 putative glutamine amidotransferase YP_001499309.1 561899 R 416276 CDS YP_001499310.1 157964486 5665501 complement(562834..564456) 1 NC_009900.1 cytochrome c oxidase polypeptide I 564456 coxA 5665501 coxA Rickettsia massiliae MTU5 cytochrome c oxidase polypeptide I YP_001499310.1 562834 R 416276 CDS YP_001499311.1 157964487 5664934 complement(565045..566058) 1 NC_009900.1 cytochrome c oxidase polypeptide II 566058 coxB 5664934 coxB Rickettsia massiliae MTU5 cytochrome c oxidase polypeptide II YP_001499311.1 565045 R 416276 CDS YP_001499312.1 157964488 5666030 566720..568177 1 NC_009900.1 membrane-bound metallopeptidase 568177 nlpD2 5666030 nlpD2 Rickettsia massiliae MTU5 membrane-bound metallopeptidase YP_001499312.1 566720 D 416276 CDS YP_001499313.1 157964489 5666031 568122..569030 1 NC_009900.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 569030 lspA 5666031 lspA Rickettsia massiliae MTU5 lipoprotein signal peptidase YP_001499313.1 568122 D 416276 CDS YP_001499314.1 157964490 5665237 569133..569384 1 NC_009900.1 hypothetical protein 569384 5665237 RMA_0576 Rickettsia massiliae MTU5 hypothetical protein YP_001499314.1 569133 D 416276 CDS YP_001499315.1 157964491 5665238 569556..571052 1 NC_009900.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 571052 murD 5665238 murD Rickettsia massiliae MTU5 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_001499315.1 569556 D 416276 CDS YP_001499316.1 157964492 5665239 571170..572318 1 NC_009900.1 cell division protein ftsW 572318 ftsW 5665239 ftsW Rickettsia massiliae MTU5 cell division protein ftsW YP_001499316.1 571170 D 416276 CDS YP_001499317.1 157964493 5665129 572315..573445 1 NC_009900.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 573445 murG 5665129 murG Rickettsia massiliae MTU5 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_001499317.1 572315 D 416276 CDS YP_001499318.1 157964494 5665130 573844..574512 1 NC_009900.1 hypothetical protein 574512 5665130 RMA_0580 Rickettsia massiliae MTU5 hypothetical protein YP_001499318.1 573844 D 416276 CDS YP_001499319.1 157964495 5665131 574917..575261 1 NC_009900.1 hypothetical protein 575261 5665131 RMA_0581 Rickettsia massiliae MTU5 hypothetical protein YP_001499319.1 574917 D 416276 CDS YP_001499320.1 157964496 5665862 complement(581106..582131) 1 NC_009900.1 glycosyltransferase 582131 5665862 RMA_0592 Rickettsia massiliae MTU5 glycosyltransferase YP_001499320.1 581106 R 416276 CDS YP_001499321.1 157964497 5665778 complement(582122..582667) 1 NC_009900.1 hypothetical protein 582667 5665778 RMA_0593 Rickettsia massiliae MTU5 hypothetical protein YP_001499321.1 582122 R 416276 CDS YP_001499322.1 157964498 5666104 583100..583912 1 NC_009900.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 583912 dapF 5666104 dapF Rickettsia massiliae MTU5 diaminopimelate epimerase YP_001499322.1 583100 D 416276 CDS YP_001499323.1 157964499 5666105 583887..585152 1 NC_009900.1 MiaB-like tRNA modifying enzyme 585152 5666105 RMA_0597 Rickettsia massiliae MTU5 MiaB-like tRNA modifying enzyme YP_001499323.1 583887 D 416276 CDS YP_001499324.1 157964500 5666106 585234..586403 1 NC_009900.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 586403 pheS 5666106 pheS Rickettsia massiliae MTU5 phenylalanyl-tRNA synthetase subunit alpha YP_001499324.1 585234 D 416276 CDS YP_001499325.1 157964501 5665322 586400..588856 1 NC_009900.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 588856 pheT 5665322 pheT Rickettsia massiliae MTU5 phenylalanyl-tRNA synthetase subunit beta YP_001499325.1 586400 D 416276 CDS YP_001499326.1 157964502 5665323 588861..590000 1 NC_009900.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 590000 dnaN 5665323 dnaN Rickettsia massiliae MTU5 DNA polymerase III subunit beta YP_001499326.1 588861 D 416276 CDS YP_001499327.1 157964503 5665933 590367..590879 1 NC_009900.1 hypothetical protein 590879 5665933 RMA_0601 Rickettsia massiliae MTU5 hypothetical protein YP_001499327.1 590367 D 416276 CDS YP_001499328.1 157964504 5665934 591008..593515 1 NC_009900.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 593515 leuS 5665934 leuS Rickettsia massiliae MTU5 leucyl-tRNA synthetase YP_001499328.1 591008 D 416276 CDS YP_001499329.1 157964505 5665935 complement(594389..595000) 1 NC_009900.1 ribonuclease D 595000 rnd2 5665935 rnd2 Rickettsia massiliae MTU5 ribonuclease D YP_001499329.1 594389 R 416276 CDS YP_001499330.1 157964506 5665062 complement(595151..595462) 1 NC_009900.1 septum formation initiator 595462 5665062 RMA_0604 Rickettsia massiliae MTU5 septum formation initiator YP_001499330.1 595151 R 416276 CDS YP_001499331.1 157964507 5665063 complement(595437..596141) 1 NC_009900.1 phosphatidate cytidylyltransferase 596141 cdsA 5665063 cdsA Rickettsia massiliae MTU5 phosphatidate cytidylyltransferase YP_001499331.1 595437 R 416276 CDS YP_001499332.1 157964508 5665064 complement(596101..596808) 1 NC_009900.1 undecaprenyl pyrophosphate synthetase 596808 uppS 5665064 uppS Rickettsia massiliae MTU5 undecaprenyl pyrophosphate synthetase YP_001499332.1 596101 R 416276 CDS YP_001499333.1 157964509 5664928 complement(596954..598396) 1 NC_009900.1 osmolarity sensor protein EnvZ 598396 envZ 5664928 envZ Rickettsia massiliae MTU5 osmolarity sensor protein EnvZ YP_001499333.1 596954 R 416276 CDS YP_001499334.1 157964510 5664929 complement(598371..599066) 1 NC_009900.1 PetR 599066 ompR 5664929 ompR Rickettsia massiliae MTU5 PetR YP_001499334.1 598371 R 416276 CDS YP_001499335.1 157964511 5664930 599267..600139 1 NC_009900.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 600139 ilvE 5664930 ilvE Rickettsia massiliae MTU5 branched-chain amino acid aminotransferase YP_001499335.1 599267 D 416276 CDS YP_001499336.1 157964512 5665387 600307..601209 1 NC_009900.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 601209 dapA 5665387 dapA Rickettsia massiliae MTU5 dihydrodipicolinate synthase YP_001499336.1 600307 D 416276 CDS YP_001499337.1 157964513 5665388 601188..601664 1 NC_009900.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 601664 smpB 5665388 smpB Rickettsia massiliae MTU5 SsrA-binding protein YP_001499337.1 601188 D 416276 CDS YP_001499338.1 157964514 5665389 601773..602597 1 NC_009900.1 Thiol:disulfide interchange protein dsbA 602597 dsbA 5665389 dsbA Rickettsia massiliae MTU5 Thiol:disulfide interchange protein dsbA YP_001499338.1 601773 D 416276 CDS YP_001499339.1 157964515 5665368 complement(602815..603693) 1 NC_009900.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 603693 sucD 5665368 sucD Rickettsia massiliae MTU5 succinyl-CoA synthetase subunit alpha YP_001499339.1 602815 R 416276 CDS YP_001499340.1 157964516 5665369 complement(603871..605031) 1 NC_009900.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 605031 sucC 5665369 sucC Rickettsia massiliae MTU5 succinyl-CoA synthetase subunit beta YP_001499340.1 603871 R 416276 CDS YP_001499341.1 157964517 5665579 complement(605438..605713) 1 NC_009900.1 AbrB family transcriptional regulator 605713 5665579 RMA_0617 Rickettsia massiliae MTU5 AbrB family transcriptional regulator YP_001499341.1 605438 R 416276 CDS YP_001499342.1 157964518 5665287 complement(606488..608524) 1 NC_009900.1 acylamino-acid-releasing protein 608524 5665287 RMA_0618 Rickettsia massiliae MTU5 acylamino-acid-releasing protein YP_001499342.1 606488 R 416276 CDS YP_001499343.1 157964519 5665288 complement(608612..609247) 1 NC_009900.1 hypothetical protein 609247 5665288 RMA_0619 Rickettsia massiliae MTU5 hypothetical protein YP_001499343.1 608612 R 416276 CDS YP_001499344.1 157964520 5665289 complement(610574..610927) 1 NC_009900.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 610927 rbfA 5665289 rbfA Rickettsia massiliae MTU5 ribosome-binding factor A YP_001499344.1 610574 R 416276 CDS YP_001499345.1 157964521 5664904 complement(610931..611401) 1 NC_009900.1 hypothetical protein 611401 5664904 RMA_0621 Rickettsia massiliae MTU5 hypothetical protein YP_001499345.1 610931 R 416276 CDS YP_001499346.1 157964522 5664905 611495..612022 1 NC_009900.1 RDD family protein 612022 5664905 RMA_0622 Rickettsia massiliae MTU5 RDD family protein YP_001499346.1 611495 D 416276 CDS YP_001499347.1 157964523 5664906 612161..612772 1 NC_009900.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 612772 recR 5664906 recR Rickettsia massiliae MTU5 recombination protein RecR YP_001499347.1 612161 D 416276 CDS YP_001499348.1 157964524 5666080 complement(614933..615775) 1 NC_009900.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 615775 ppnK 5666080 ppnK Rickettsia massiliae MTU5 inorganic polyphosphate/ATP-NAD kinase YP_001499348.1 614933 R 416276 CDS YP_001499349.1 157964525 5664984 615784..617469 1 NC_009900.1 metallo-beta-lactamase family hydrolase 617469 5664984 RMA_0627 Rickettsia massiliae MTU5 metallo-beta-lactamase family hydrolase YP_001499349.1 615784 D 416276 CDS YP_001499350.1 157964526 5664985 617718..618710 1 NC_009900.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 618710 gpsA 5664985 gpsA Rickettsia massiliae MTU5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_001499350.1 617718 D 416276 CDS YP_001499351.1 157964527 5665677 619482..620432 1 NC_009900.1 putative permease 620432 5665677 RMA_0629 Rickettsia massiliae MTU5 putative permease YP_001499351.1 619482 D 416276 CDS YP_001499352.1 157964528 5665678 620490..621365 1 NC_009900.1 putative hydrolase/acyltransferase 621365 5665678 RMA_0630 Rickettsia massiliae MTU5 putative hydrolase/acyltransferase YP_001499352.1 620490 D 416276 CDS YP_001499353.1 157964529 5665679 621558..622499 1 NC_009900.1 thioredoxin reductase 622499 trxB1 5665679 trxB1 Rickettsia massiliae MTU5 thioredoxin reductase YP_001499353.1 621558 D 416276 CDS YP_001499354.1 157964530 5665772 622730..623056 1 NC_009900.1 hypothetical protein 623056 5665772 RMA_0632 Rickettsia massiliae MTU5 hypothetical protein YP_001499354.1 622730 D 416276 CDS YP_001499355.1 157964531 5665773 623218..624696 1 NC_009900.1 succinate semialdehyde dehydrogenase 624696 gabD 5665773 gabD Rickettsia massiliae MTU5 succinate semialdehyde dehydrogenase YP_001499355.1 623218 D 416276 CDS YP_001499356.1 157964532 5665774 624854..625204 1 NC_009900.1 hypothetical protein 625204 5665774 RMA_0634 Rickettsia massiliae MTU5 hypothetical protein YP_001499356.1 624854 D 416276 CDS YP_001499357.1 157964533 5664941 625197..626042 1 NC_009900.1 glycosyl transferase family protein 626042 lgtD 5664941 lgtD Rickettsia massiliae MTU5 glycosyl transferase family protein YP_001499357.1 625197 D 416276 CDS YP_001499358.1 157964534 5664942 626227..628188 1 NC_009900.1 DNA helicase II 628188 uvrD 5664942 uvrD Rickettsia massiliae MTU5 DNA helicase II YP_001499358.1 626227 D 416276 CDS YP_001499359.1 157964535 5664943 629651..631003 1 NC_009900.1 hypothetical protein 631003 5664943 RMA_0637 Rickettsia massiliae MTU5 hypothetical protein YP_001499359.1 629651 D 416276 CDS YP_001499360.1 157964536 5666201 complement(631180..632220) 1 NC_009900.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 632220 tdcB 5666201 tdcB Rickettsia massiliae MTU5 threonine dehydratase YP_001499360.1 631180 R 416276 CDS YP_001499361.1 157964537 5666202 632294..634633 1 NC_009900.1 ATP-dependent protease La 634633 lon1 5666202 lon1 Rickettsia massiliae MTU5 ATP-dependent protease La YP_001499361.1 632294 D 416276 CDS YP_001499362.1 157964538 5666205 complement(635796..636164) 1 NC_009900.1 hypothetical protein 636164 5666205 RMA_0642 Rickettsia massiliae MTU5 hypothetical protein YP_001499362.1 635796 R 416276 CDS YP_001499363.1 157964539 5665216 637259..637837 1 NC_009900.1 putative sigma(54) modulation protein 637837 yhbH 5665216 yhbH Rickettsia massiliae MTU5 putative sigma(54) modulation protein YP_001499363.1 637259 D 416276 CDS YP_001499364.1 157964540 5665514 complement(638361..639233) 1 NC_009900.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 639233 folD 5665514 folD Rickettsia massiliae MTU5 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_001499364.1 638361 R 416276 CDS YP_001499365.1 157964541 5665515 complement(639380..640393) 1 NC_009900.1 thioredoxin reductase 640393 trxB2 5665515 trxB2 Rickettsia massiliae MTU5 thioredoxin reductase YP_001499365.1 639380 R 416276 CDS YP_001499366.1 157964542 5665516 640740..641084 1 NC_009900.1 P pilus assembly protein, chaperone PapD 641084 famC 5665516 famC Rickettsia massiliae MTU5 P pilus assembly protein, chaperone PapD YP_001499366.1 640740 D 416276 CDS YP_001499367.1 157964543 5664982 644926..646779 1 NC_009900.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 646779 nrdA 5664982 nrdA Rickettsia massiliae MTU5 ribonucleotide-diphosphate reductase subunit alpha YP_001499367.1 644926 D 416276 CDS YP_001499368.1 157964544 5665540 647662..648672 1 NC_009900.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 648672 nrdF 5665540 nrdF Rickettsia massiliae MTU5 ribonucleotide-diphosphate reductase subunit beta YP_001499368.1 647662 D 416276 CDS YP_001499369.1 157964545 5665541 648789..651656 1 NC_009900.1 hypothetical protein 651656 5665541 RMA_0658 Rickettsia massiliae MTU5 hypothetical protein YP_001499369.1 648789 D 416276 CDS YP_001499370.1 157964546 5664895 complement(653695..654786) 1 NC_009900.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 654786 miaA 5664895 miaA Rickettsia massiliae MTU5 tRNA delta(2)-isopentenylpyrophosphate transferase YP_001499370.1 653695 R 416276 CDS YP_001499371.1 157964547 5664896 complement(655337..656725) 1 NC_009900.1 phosphomannomutase 656725 exoC 5664896 exoC Rickettsia massiliae MTU5 phosphomannomutase YP_001499371.1 655337 R 416276 CDS YP_001499372.1 157964548 5664897 complement(656896..657627) 1 NC_009900.1 ABC transporter ATP-binding protein 657627 abcT2 5664897 abcT2 Rickettsia massiliae MTU5 ABC transporter ATP-binding protein YP_001499372.1 656896 R 416276 CDS YP_001499373.1 157964549 5664887 complement(657802..658386) 1 NC_009900.1 hypothetical protein 658386 5664887 RMA_0666 Rickettsia massiliae MTU5 hypothetical protein YP_001499373.1 657802 R 416276 CDS YP_001499374.1 157964550 5664888 complement(658355..658951) 1 NC_009900.1 hypothetical protein 658951 5664888 RMA_0667 Rickettsia massiliae MTU5 hypothetical protein YP_001499374.1 658355 R 416276 CDS YP_001499375.1 157964551 5664889 complement(658957..659931) 1 NC_009900.1 KpsF 659931 kpsF 5664889 kpsF Rickettsia massiliae MTU5 KpsF YP_001499375.1 658957 R 416276 CDS YP_001499376.1 157964552 5664935 complement(660123..662360) 1 NC_009900.1 polynucleotide phosphorylase/polyadenylase 662360 pnp 5664935 pnp Rickettsia massiliae MTU5 polynucleotide phosphorylase/polyadenylase YP_001499376.1 660123 R 416276 CDS YP_001499377.1 157964553 5664936 complement(662499..662807) 1 NC_009900.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 662807 rpsO 5664936 rpsO Rickettsia massiliae MTU5 30S ribosomal protein S15 YP_001499377.1 662499 R 416276 CDS YP_001499378.1 157964554 5664937 complement(662810..663853) 1 NC_009900.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; proteins in this cluster have Rickettsial repeat elements (RPE) inserts; tRNA pseudouridine synthase B 663853 truB 5664937 truB Rickettsia massiliae MTU5 tRNA pseudouridine synthase B YP_001499378.1 662810 R 416276 CDS YP_001499379.1 157964555 5664947 663929..665467 1 NC_009900.1 ATP/ADP translocase 665467 tlc4 5664947 tlc4 Rickettsia massiliae MTU5 ATP/ADP translocase YP_001499379.1 663929 D 416276 CDS YP_001499380.1 157964556 5664948 665759..668842 1 NC_009900.1 cell surface antigen Sca4 668842 sca4 5664948 sca4 Rickettsia massiliae MTU5 cell surface antigen Sca4 YP_001499380.1 665759 D 416276 CDS YP_001499381.1 157964557 5664954 complement(668965..669360) 1 NC_009900.1 putative transcriptional regulator 669360 hipB 5664954 hipB Rickettsia massiliae MTU5 putative transcriptional regulator YP_001499381.1 668965 R 416276 CDS YP_001499382.1 157964558 5664955 669849..670715 1 NC_009900.1 putative ribonuclease BN 670715 rbn 5664955 rbn Rickettsia massiliae MTU5 putative ribonuclease BN YP_001499382.1 669849 D 416276 CDS YP_001499383.1 157964559 5664956 complement(670880..671725) 1 NC_009900.1 glutamine synthetase 671725 glnA 5664956 glnA Rickettsia massiliae MTU5 glutamine synthetase YP_001499383.1 670880 R 416276 CDS YP_001499384.1 157964560 5665005 671697..672434 1 NC_009900.1 hypothetical protein 672434 5665005 RMA_0677 Rickettsia massiliae MTU5 hypothetical protein YP_001499384.1 671697 D 416276 CDS YP_001499385.1 157964561 5665006 672690..673259 1 NC_009900.1 polypeptide deformylase 673259 def2 5665006 def2 Rickettsia massiliae MTU5 polypeptide deformylase YP_001499385.1 672690 D 416276 CDS YP_001499386.1 157964562 5665007 673464..673616 1 NC_009900.1 antitoxin of toxin-antitoxin 673616 5665007 RMA_0679 Rickettsia massiliae MTU5 antitoxin of toxin-antitoxin YP_001499386.1 673464 D 416276 CDS YP_001499387.1 157964563 5665074 complement(674132..674839) 1 NC_009900.1 hypothetical protein 674839 addA 5665074 addA Rickettsia massiliae MTU5 hypothetical protein YP_001499387.1 674132 R 416276 CDS YP_001499388.1 157964564 5665075 complement(675063..676877) 1 NC_009900.1 hypothetical protein 676877 5665075 RMA_0682 Rickettsia massiliae MTU5 hypothetical protein YP_001499388.1 675063 R 416276 CDS YP_001499389.1 157964565 5665065 complement(677124..679775) 1 NC_009900.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 679775 ppdK 5665065 ppdK Rickettsia massiliae MTU5 pyruvate phosphate dikinase YP_001499389.1 677124 R 416276 CDS YP_001499390.1 157964566 5665150 680701..681369 1 NC_009900.1 glutathione S-transferase 681369 5665150 RMA_0684 Rickettsia massiliae MTU5 glutathione S-transferase YP_001499390.1 680701 D 416276 CDS YP_001499391.1 157964567 5665067 complement(681480..682268) 1 NC_009900.1 biotin-protein ligase 682268 bpl1 5665067 bpl1 Rickettsia massiliae MTU5 biotin-protein ligase YP_001499391.1 681480 R 416276 CDS YP_001499392.1 157964568 5665094 682308..682850 1 NC_009900.1 BioY family protein 682850 bioY2 5665094 bioY2 Rickettsia massiliae MTU5 BioY family protein YP_001499392.1 682308 D 416276 CDS YP_001499393.1 157964569 5665095 683027..684313 1 NC_009900.1 folylpolyglutamate synthase 684313 folC 5665095 folC Rickettsia massiliae MTU5 folylpolyglutamate synthase YP_001499393.1 683027 D 416276 CDS YP_001499394.1 157964570 5665096 684457..685113 1 NC_009900.1 superoxide dismutase 685113 sodB 5665096 sodB Rickettsia massiliae MTU5 superoxide dismutase YP_001499394.1 684457 D 416276 CDS YP_001499395.1 157964571 5665172 685118..686914 1 NC_009900.1 putative esterase of the alpha/beta hydrolase superfamily protein 686914 rssA 5665172 rssA Rickettsia massiliae MTU5 putative esterase of the alpha/beta hydrolase superfamily protein YP_001499395.1 685118 D 416276 CDS YP_001499396.1 157964572 5665173 687023..687835 1 NC_009900.1 biotin-(acetyl-CoA carboxylase) ligase 687835 birA 5665173 birA Rickettsia massiliae MTU5 biotin-(acetyl-CoA carboxylase) ligase YP_001499396.1 687023 D 416276 CDS YP_001499397.1 157964573 5665217 688712..689128 1 NC_009900.1 hypothetical protein 689128 5665217 RMA_0691 Rickettsia massiliae MTU5 hypothetical protein YP_001499397.1 688712 D 416276 CDS YP_001499398.1 157964574 5665219 690088..690495 1 NC_009900.1 hypothetical protein 690495 5665219 RMA_0693 Rickettsia massiliae MTU5 hypothetical protein YP_001499398.1 690088 D 416276 CDS YP_001499399.1 157964575 5665362 693299..693616 1 NC_009900.1 nucleotidyltransferase substrate binding protein 693616 5665362 RMA_0697 Rickettsia massiliae MTU5 nucleotidyltransferase substrate binding protein YP_001499399.1 693299 D 416276 CDS YP_001499400.1 157964576 5665364 693912..694085 1 NC_009900.1 hypothetical protein 694085 5665364 RMA_0699 Rickettsia massiliae MTU5 hypothetical protein YP_001499400.1 693912 D 416276 CDS YP_001499401.1 157964577 5665372 694072..694401 1 NC_009900.1 hypothetical protein 694401 5665372 RMA_0700 Rickettsia massiliae MTU5 hypothetical protein YP_001499401.1 694072 D 416276 CDS YP_001499402.1 157964578 5665373 694444..695025 1 NC_009900.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 695025 infC 5665373 infC Rickettsia massiliae MTU5 translation initiation factor IF-3 YP_001499402.1 694444 D 416276 CDS YP_001499403.1 157964579 5665374 695171..696409 1 NC_009900.1 branched-chain alpha-keto acid dehydrogenase subunit E2 696409 pdhC 5665374 pdhC Rickettsia massiliae MTU5 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_001499403.1 695171 D 416276 CDS YP_001499404.1 157964580 5665390 696542..697627 1 NC_009900.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 697627 prfA 5665390 prfA Rickettsia massiliae MTU5 peptide chain release factor 1 YP_001499404.1 696542 D 416276 CDS YP_001499405.1 157964581 5665391 697572..699398 1 NC_009900.1 single-stranded-DNA-specific exonuclease RecJ 699398 recJ 5665391 recJ Rickettsia massiliae MTU5 single-stranded-DNA-specific exonuclease RecJ YP_001499405.1 697572 D 416276 CDS YP_001499406.1 157964582 5665392 699444..700766 1 NC_009900.1 putative methyltransferase 700766 5665392 RMA_0705 Rickettsia massiliae MTU5 putative methyltransferase YP_001499406.1 699444 D 416276 CDS YP_001499407.1 157964583 5665443 701107..702513 1 NC_009900.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 702513 rho 5665443 rho Rickettsia massiliae MTU5 transcription termination factor Rho YP_001499407.1 701107 D 416276 CDS YP_001499408.1 157964584 5665444 702639..703556 1 NC_009900.1 signal peptide peptidase SppA 703556 sppA2 5665444 sppA2 Rickettsia massiliae MTU5 signal peptide peptidase SppA YP_001499408.1 702639 D 416276 CDS YP_001499409.1 157964585 5665522 703556..703801 1 NC_009900.1 integration host factor beta-subunit 703801 himD 5665522 himD Rickettsia massiliae MTU5 integration host factor beta-subunit YP_001499409.1 703556 D 416276 CDS YP_001499410.1 157964586 5665565 707761..708921 1 NC_009900.1 integrase 708921 5665565 RMA_0713 Rickettsia massiliae MTU5 integrase YP_001499410.1 707761 D 416276 CDS YP_001499411.1 157964587 5665871 709137..709760 1 NC_009900.1 Phage-associated protein 709760 5665871 RMA_0714 Rickettsia massiliae MTU5 Phage-associated protein YP_001499411.1 709137 D 416276 CDS YP_001499412.1 157964588 5665872 709757..710017 1 NC_009900.1 putative toxin of toxin-antitoxin 710017 5665872 RMA_0715 Rickettsia massiliae MTU5 putative toxin of toxin-antitoxin YP_001499412.1 709757 D 416276 CDS YP_001499413.1 157964589 5665873 710474..710788 1 NC_009900.1 hypothetical protein 710788 5665873 RMA_0716 Rickettsia massiliae MTU5 hypothetical protein YP_001499413.1 710474 D 416276 CDS YP_001499414.1 157964590 5665319 710788..711342 1 NC_009900.1 conjugative transfer protein TraE 711342 traE 5665319 traE Rickettsia massiliae MTU5 conjugative transfer protein TraE YP_001499414.1 710788 D 416276 CDS YP_001499415.1 157964591 5665320 711339..711794 1 NC_009900.1 hypothetical protein 711794 5665320 RMA_0718 Rickettsia massiliae MTU5 hypothetical protein YP_001499415.1 711339 D 416276 CDS YP_001499416.1 157964592 5665321 711733..712086 1 NC_009900.1 hypothetical protein 712086 5665321 RMA_0719 Rickettsia massiliae MTU5 hypothetical protein YP_001499416.1 711733 D 416276 CDS YP_001499417.1 157964593 5665631 712111..713523 1 NC_009900.1 F pilus assembly protein TraB 713523 traB 5665631 traB Rickettsia massiliae MTU5 F pilus assembly protein TraB YP_001499417.1 712111 D 416276 CDS YP_001499418.1 157964594 5665632 713523..713762 1 NC_009900.1 conjugative transfer protein TraV 713762 traV 5665632 traV Rickettsia massiliae MTU5 conjugative transfer protein TraV YP_001499418.1 713523 D 416276 CDS YP_001499419.1 157964595 5665633 713762..716281 1 NC_009900.1 conjugative transfer protein TraC 716281 5665633 RMA_0722 Rickettsia massiliae MTU5 conjugative transfer protein TraC YP_001499419.1 713762 D 416276 CDS YP_001499420.1 157964596 5665819 716369..717955 1 NC_009900.1 ATPase family protein 717955 5665819 RMA_0723 Rickettsia massiliae MTU5 ATPase family protein YP_001499420.1 716369 D 416276 CDS YP_001499421.1 157964597 5665925 719018..719998 1 NC_009900.1 conjugal DNA transfer protein TraU 719998 traU 5665925 traU Rickettsia massiliae MTU5 conjugal DNA transfer protein TraU YP_001499421.1 719018 D 416276 CDS YP_001499422.1 157964598 5665926 719983..720450 1 NC_009900.1 conjugative transfer protein TrbC 720450 trbC 5665926 trbC Rickettsia massiliae MTU5 conjugative transfer protein TrbC YP_001499422.1 719983 D 416276 CDS YP_001499423.1 157964599 5665951 720420..722246 1 NC_009900.1 conjugative transfer protein TraN 722246 traN 5665951 traN Rickettsia massiliae MTU5 conjugative transfer protein TraN YP_001499423.1 720420 D 416276 CDS YP_001499424.1 157964600 5665952 722212..723123 1 NC_009900.1 F pilus assembly protein TraF 723123 traF 5665952 traF Rickettsia massiliae MTU5 F pilus assembly protein TraF YP_001499424.1 722212 D 416276 CDS YP_001499425.1 157964601 5665953 723138..724478 1 NC_009900.1 F pilus assembly protein TraH 724478 traH 5665953 traH Rickettsia massiliae MTU5 F pilus assembly protein TraH YP_001499425.1 723138 D 416276 CDS YP_001499426.1 157964602 5666044 724557..727286 1 NC_009900.1 conjugative transfer protein TraG 727286 traG 5666044 traG Rickettsia massiliae MTU5 conjugative transfer protein TraG YP_001499426.1 724557 D 416276 CDS YP_001499427.1 157964603 5666045 727264..728466 1 NC_009900.1 hypothetical protein 728466 5666045 RMA_0732 Rickettsia massiliae MTU5 hypothetical protein YP_001499427.1 727264 D 416276 CDS YP_001499428.1 157964604 5666046 728456..730162 1 NC_009900.1 putative conjugative transfer protein TraD 730162 traD_F 5666046 traD_F Rickettsia massiliae MTU5 putative conjugative transfer protein TraD YP_001499428.1 728456 D 416276 CDS YP_001499429.1 157964605 5665927 complement(730392..731435) 1 NC_009900.1 transposase 731435 5665927 RMA_0734 Rickettsia massiliae MTU5 transposase YP_001499429.1 730392 R 416276 CDS YP_001499430.1 157964606 5665928 complement(731479..735615) 1 NC_009900.1 conjugal transfer protein TraA 735615 traA_Ti 5665928 traA_Ti Rickettsia massiliae MTU5 conjugal transfer protein TraA YP_001499430.1 731479 R 416276 CDS YP_001499431.1 157964607 5665929 736269..737219 1 NC_009900.1 transposase 737219 5665929 RMA_0736 Rickettsia massiliae MTU5 transposase YP_001499431.1 736269 D 416276 CDS YP_001499432.1 157964608 5666126 complement(738541..739035) 1 NC_009900.1 hypothetical protein 739035 5666126 RMA_0739 Rickettsia massiliae MTU5 hypothetical protein YP_001499432.1 738541 R 416276 CDS YP_001499433.1 157964609 5666053 complement(739025..739786) 1 NC_009900.1 transposase 739786 5666053 RMA_0740 Rickettsia massiliae MTU5 transposase YP_001499433.1 739025 R 416276 CDS YP_001499434.1 157964610 5665687 complement(740443..740886) 1 NC_009900.1 transposase 740886 5665687 RMA_0742 Rickettsia massiliae MTU5 transposase YP_001499434.1 740443 R 416276 CDS YP_001499435.1 157964611 5666139 742440..742772 1 NC_009900.1 transposase 742772 5666139 RMA_0745 Rickettsia massiliae MTU5 transposase YP_001499435.1 742440 D 416276 CDS YP_001499436.1 157964612 5666140 742738..743607 1 NC_009900.1 transposase 743607 5666140 RMA_0746 Rickettsia massiliae MTU5 transposase YP_001499436.1 742738 D 416276 CDS YP_001499437.1 157964613 5666141 complement(743852..744826) 1 NC_009900.1 transposase 744826 5666141 RMA_0747 Rickettsia massiliae MTU5 transposase YP_001499437.1 743852 R 416276 CDS YP_001499438.1 157964614 5666251 745038..746159 1 NC_009900.1 transposase 746159 5666251 RMA_0748 Rickettsia massiliae MTU5 transposase YP_001499438.1 745038 D 416276 CDS YP_001499439.1 157964615 5666252 complement(746171..746776) 1 NC_009900.1 transposase 746776 5666252 RMA_0749 Rickettsia massiliae MTU5 transposase YP_001499439.1 746171 R 416276 CDS YP_001499440.1 157964616 5666253 747230..748666 1 NC_009900.1 transposase 748666 5666253 RMA_0750 Rickettsia massiliae MTU5 transposase YP_001499440.1 747230 D 416276 CDS YP_001499441.1 157964617 5666236 complement(748783..757167) 1 NC_009900.1 DNA polymerase III subunit alpha 757167 dnaE2 5666236 dnaE2 Rickettsia massiliae MTU5 DNA polymerase III subunit alpha YP_001499441.1 748783 R 416276 CDS YP_001499442.1 157964618 5666237 757523..757819 1 NC_009900.1 conjugal transfer protein TraD 757819 traD_Ti 5666237 traD_Ti Rickettsia massiliae MTU5 conjugal transfer protein TraD YP_001499442.1 757523 D 416276 CDS YP_001499443.1 157964619 5666238 complement(757845..758504) 1 NC_009900.1 guanosine polyphosphate pyrophosphohydrolase/synthetase 758504 spoT6 5666238 spoT6 Rickettsia massiliae MTU5 guanosine polyphosphate pyrophosphohydrolase/synthetase YP_001499443.1 757845 R 416276 CDS YP_001499444.1 157964620 5666225 complement(758663..759679) 1 NC_009900.1 Signal transduction histidine kinase 759679 5666225 RMA_0754 Rickettsia massiliae MTU5 Signal transduction histidine kinase YP_001499444.1 758663 R 416276 CDS YP_001499445.1 157964621 5666226 759968..760768 1 NC_009900.1 site-specific DNA adenine methylase 760768 dam2 5666226 dam2 Rickettsia massiliae MTU5 site-specific DNA adenine methylase YP_001499445.1 759968 D 416276 CDS YP_001499446.1 157964622 5666227 complement(761012..762733) 1 NC_009900.1 hypothetical protein 762733 5666227 RMA_0756 Rickettsia massiliae MTU5 hypothetical protein YP_001499446.1 761012 R 416276 CDS YP_001499447.1 157964623 5665151 763296..763451 1 NC_009900.1 hypothetical protein 763451 5665151 RMA_0757 Rickettsia massiliae MTU5 hypothetical protein YP_001499447.1 763296 D 416276 CDS YP_001499448.1 157964624 5666224 763545..764234 1 NC_009900.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 764234 cmk 5666224 cmk Rickettsia massiliae MTU5 cytidylate kinase YP_001499448.1 763545 D 416276 CDS YP_001499449.1 157964625 5666217 764382..766088 1 NC_009900.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 766088 rpsA 5666217 rpsA Rickettsia massiliae MTU5 30S ribosomal protein S1 YP_001499449.1 764382 D 416276 CDS YP_001499450.1 157964626 5666218 766200..766850 1 NC_009900.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 766850 clpP 5666218 clpP Rickettsia massiliae MTU5 ATP-dependent Clp protease proteolytic subunit YP_001499450.1 766200 D 416276 CDS YP_001499451.1 157964627 5665089 769554..770594 1 NC_009900.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 770594 fni 5665089 fni Rickettsia massiliae MTU5 isopentenyl pyrophosphate isomerase YP_001499451.1 769554 D 416276 CDS YP_001499452.1 157964628 5665090 complement(770743..770892) 1 NC_009900.1 putative acetyltransferase 770892 5665090 RMA_0767 Rickettsia massiliae MTU5 putative acetyltransferase YP_001499452.1 770743 R 416276 CDS YP_001499453.1 157964629 5665110 complement(771134..771592) 1 NC_009900.1 acetyltransferase GNAT family protein 771592 5665110 RMA_0769 Rickettsia massiliae MTU5 acetyltransferase GNAT family protein YP_001499453.1 771134 R 416276 CDS YP_001499454.1 157964630 5665111 complement(771651..772169) 1 NC_009900.1 hypothetical protein 772169 5665111 RMA_0770 Rickettsia massiliae MTU5 hypothetical protein YP_001499454.1 771651 R 416276 CDS YP_001499455.1 157964631 5664877 complement(772610..773104) 1 NC_009900.1 hypothetical protein 773104 5664877 RMA_0772 Rickettsia massiliae MTU5 hypothetical protein YP_001499455.1 772610 R 416276 CDS YP_001499456.1 157964632 5665470 complement(774548..775294) 1 NC_009900.1 UDP-N-acetylglucosamine pyrophosphorylase 775294 glmU 5665470 glmU Rickettsia massiliae MTU5 UDP-N-acetylglucosamine pyrophosphorylase YP_001499456.1 774548 R 416276 CDS YP_001499457.1 157964633 5664987 complement(775291..776217) 1 NC_009900.1 hypothetical protein 776217 5664987 RMA_0775 Rickettsia massiliae MTU5 hypothetical protein YP_001499457.1 775291 R 416276 CDS YP_001499458.1 157964634 5664988 complement(776263..776388) 1 NC_009900.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 776388 rpmJ 5664988 rpmJ Rickettsia massiliae MTU5 50S ribosomal protein L36 YP_001499458.1 776263 R 416276 CDS YP_001499459.1 157964635 5665022 776909..777658 1 NC_009900.1 hypothetical protein 777658 5665022 RMA_0778 Rickettsia massiliae MTU5 hypothetical protein YP_001499459.1 776909 D 416276 CDS YP_001499460.1 157964636 5665023 777760..778602 1 NC_009900.1 soluble lytic murein transglycosylase and related regulatory protein 778602 mltE2 5665023 mltE2 Rickettsia massiliae MTU5 soluble lytic murein transglycosylase and related regulatory protein YP_001499460.1 777760 D 416276 CDS YP_001499461.1 157964637 5665068 778586..779092 1 NC_009900.1 hypothetical protein 779092 5665068 RMA_0780 Rickettsia massiliae MTU5 hypothetical protein YP_001499461.1 778586 D 416276 CDS YP_001499462.1 157964638 5665069 779409..779918 1 NC_009900.1 transposase 779918 5665069 RMA_0781 Rickettsia massiliae MTU5 transposase YP_001499462.1 779409 D 416276 CDS YP_001499463.1 157964639 5665246 781799..782620 1 NC_009900.1 hypothetical protein 782620 5665246 RMA_0785 Rickettsia massiliae MTU5 hypothetical protein YP_001499463.1 781799 D 416276 CDS YP_001499464.1 157964640 5665247 782776..784155 1 NC_009900.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 784155 lpdA2 5665247 lpdA2 Rickettsia massiliae MTU5 dihydrolipoamide dehydrogenase YP_001499464.1 782776 D 416276 CDS YP_001499465.1 157964641 5665248 784403..784972 1 NC_009900.1 5-formyltetrahydrofolate cyclo-ligase 784972 5665248 RMA_0787 Rickettsia massiliae MTU5 5-formyltetrahydrofolate cyclo-ligase YP_001499465.1 784403 D 416276 CDS YP_001499466.1 157964642 5665271 complement(785365..786219) 1 NC_009900.1 ribonuclease D 786219 rnd 5665271 rnd Rickettsia massiliae MTU5 ribonuclease D YP_001499466.1 785365 R 416276 CDS YP_001499467.1 157964643 5665272 complement(786220..787056) 1 NC_009900.1 hypothetical protein 787056 5665272 RMA_0789 Rickettsia massiliae MTU5 hypothetical protein YP_001499467.1 786220 R 416276 CDS YP_001499468.1 157964644 5665273 787115..788131 1 NC_009900.1 related to GcvT; putative aminomethyltransferase 788131 5665273 RMA_0790 Rickettsia massiliae MTU5 putative aminomethyltransferase YP_001499468.1 787115 D 416276 CDS YP_001499469.1 157964645 5665313 788761..789423 1 NC_009900.1 ankyrin repeat-containing protein 789423 5665313 RMA_0791 Rickettsia massiliae MTU5 ankyrin repeat-containing protein YP_001499469.1 788761 D 416276 CDS YP_001499470.1 157964646 5665461 792650..793666 1 NC_009900.1 microcin C7 resistance protein 793666 mccF2 5665461 mccF2 Rickettsia massiliae MTU5 microcin C7 resistance protein YP_001499470.1 792650 D 416276 CDS YP_001499471.1 157964647 5665472 793663..794718 1 NC_009900.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 794718 hemC 5665472 hemC Rickettsia massiliae MTU5 porphobilinogen deaminase YP_001499471.1 793663 D 416276 CDS YP_001499472.1 157964648 5665471 complement(796626..797618) 1 NC_009900.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 797618 trpS 5665471 trpS Rickettsia massiliae MTU5 tryptophanyl-tRNA synthetase YP_001499472.1 796626 R 416276 CDS YP_001499473.1 157964649 5665487 797697..798422 1 NC_009900.1 1-acyl-sn-glycerol-3-phosphate acyltransferase 798422 plsC 5665487 plsC Rickettsia massiliae MTU5 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_001499473.1 797697 D 416276 CDS YP_001499474.1 157964650 5665505 798475..798927 1 NC_009900.1 AtsE-like protein 798927 5665505 RMA_0805 Rickettsia massiliae MTU5 AtsE-like protein YP_001499474.1 798475 D 416276 CDS YP_001499475.1 157964651 5665506 799486..800211 1 NC_009900.1 alpha/beta family hydrolase 800211 5665506 RMA_0806 Rickettsia massiliae MTU5 alpha/beta family hydrolase YP_001499475.1 799486 D 416276 CDS YP_001499476.1 157964652 5665438 complement(801446..802213) 1 NC_009900.1 hypothetical protein 802213 5665438 RMA_0809 Rickettsia massiliae MTU5 hypothetical protein YP_001499476.1 801446 R 416276 CDS YP_001499477.1 157964653 5665439 complement(802191..802919) 1 NC_009900.1 hypothetical protein 802919 5665439 RMA_0810 Rickettsia massiliae MTU5 hypothetical protein YP_001499477.1 802191 R 416276 CDS YP_001499478.1 157964654 5665651 complement(802846..803487) 1 NC_009900.1 lysine efflux permease 803487 lysE 5665651 lysE Rickettsia massiliae MTU5 lysine efflux permease YP_001499478.1 802846 R 416276 CDS YP_001499479.1 157964655 5665652 complement(803895..805310) 1 NC_009900.1 AmpG protein 805310 ampG1 5665652 ampG1 Rickettsia massiliae MTU5 AmpG protein YP_001499479.1 803895 R 416276 CDS YP_001499480.1 157964656 5665336 806395..807921 1 NC_009900.1 ATP/ADP translocase 807921 tlc3 5665336 tlc3 Rickettsia massiliae MTU5 ATP/ADP translocase YP_001499480.1 806395 D 416276 CDS YP_001499481.1 157964657 5665337 807941..809689 1 NC_009900.1 hypothetical protein 809689 5665337 RMA_0817 Rickettsia massiliae MTU5 hypothetical protein YP_001499481.1 807941 D 416276 CDS YP_001499482.1 157964658 5665338 809696..810787 1 NC_009900.1 octaprenyl-diphosphate synthase 810787 ispB 5665338 ispB Rickettsia massiliae MTU5 octaprenyl-diphosphate synthase YP_001499482.1 809696 D 416276 CDS YP_001499483.1 157964659 5665370 complement(811080..813110) 1 NC_009900.1 aminopeptidase P 813110 pepP 5665370 pepP Rickettsia massiliae MTU5 aminopeptidase P YP_001499483.1 811080 R 416276 CDS YP_001499484.1 157964660 5665175 complement(813213..814502) 1 NC_009900.1 putrescine-ornithine antiporter 814502 potE 5665175 potE Rickettsia massiliae MTU5 putrescine-ornithine antiporter YP_001499484.1 813213 R 416276 CDS YP_001499485.1 157964661 5665176 complement(815619..815972) 1 NC_009900.1 Iron-sulfur cluster assembly accessory protein 815972 iscA2 5665176 iscA2 Rickettsia massiliae MTU5 Iron-sulfur cluster assembly accessory protein YP_001499485.1 815619 R 416276 CDS YP_001499486.1 157964662 5665711 complement(815976..816377) 1 NC_009900.1 scaffold protein 816377 iscU 5665711 iscU Rickettsia massiliae MTU5 scaffold protein YP_001499486.1 815976 R 416276 CDS YP_001499487.1 157964663 5665712 complement(816523..817755) 1 NC_009900.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 817755 iscS 5665712 iscS Rickettsia massiliae MTU5 cysteine desulfurase YP_001499487.1 816523 R 416276 CDS YP_001499488.1 157964664 5665713 complement(817858..818976) 1 NC_009900.1 NifS-like protein 818976 spl1 5665713 spl1 Rickettsia massiliae MTU5 NifS-like protein YP_001499488.1 817858 R 416276 CDS YP_001499489.1 157964665 5665628 complement(818973..819392) 1 NC_009900.1 Iron-sulfur cluster assembly transcription factor IscR 819392 iscR 5665628 iscR Rickettsia massiliae MTU5 Iron-sulfur cluster assembly transcription factor IscR YP_001499489.1 818973 R 416276 CDS YP_001499490.1 157964666 5665742 complement(821430..822317) 1 NC_009900.1 hypothetical protein 822317 5665742 RMA_0829 Rickettsia massiliae MTU5 hypothetical protein YP_001499490.1 821430 R 416276 CDS YP_001499491.1 157964667 5664912 827620..828996 1 NC_009900.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 828996 nuoN1 5664912 nuoN1 Rickettsia massiliae MTU5 NADH dehydrogenase subunit N YP_001499491.1 827620 D 416276 CDS YP_001499492.1 157964668 5664913 complement(828983..830527) 1 NC_009900.1 hypothetical protein 830527 5664913 RMA_0835 Rickettsia massiliae MTU5 hypothetical protein YP_001499492.1 828983 R 416276 CDS YP_001499493.1 157964669 5665408 complement(830622..831623) 1 NC_009900.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 831623 hemB 5665408 hemB Rickettsia massiliae MTU5 delta-aminolevulinic acid dehydratase YP_001499493.1 830622 R 416276 CDS YP_001499494.1 157964670 5665409 831788..832834 1 NC_009900.1 hypothetical protein 832834 5665409 RMA_0837 Rickettsia massiliae MTU5 hypothetical protein YP_001499494.1 831788 D 416276 CDS YP_001499495.1 157964671 5665410 complement(832831..834777) 1 NC_009900.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 834777 priA 5665410 priA Rickettsia massiliae MTU5 primosome assembly protein PriA YP_001499495.1 832831 R 416276 CDS YP_001499496.1 157964672 5665836 834841..835416 1 NC_009900.1 aromatic acid decarboxylase 835416 ubiX 5665836 ubiX Rickettsia massiliae MTU5 aromatic acid decarboxylase YP_001499496.1 834841 D 416276 CDS YP_001499497.1 157964673 5665837 835795..837282 1 NC_009900.1 unwinds double stranded DNA; replicative DNA helicase 837282 dnaB 5665837 dnaB Rickettsia massiliae MTU5 replicative DNA helicase YP_001499497.1 835795 D 416276 CDS YP_001499498.1 157964674 5665399 838994..839683 1 NC_009900.1 ribosomal large subunit pseudouridine synthase 839683 rluA2 5665399 rluA2 Rickettsia massiliae MTU5 ribosomal large subunit pseudouridine synthase YP_001499498.1 838994 D 416276 CDS YP_001499499.1 157964675 5665400 839705..842599 1 NC_009900.1 hypothetical protein 842599 5665400 RMA_0846 Rickettsia massiliae MTU5 hypothetical protein YP_001499499.1 839705 D 416276 CDS YP_001499500.1 157964676 5665401 842604..843401 1 NC_009900.1 N6-adenine-specific methylase 843401 5665401 RMA_0847 Rickettsia massiliae MTU5 N6-adenine-specific methylase YP_001499500.1 842604 D 416276 CDS YP_001499501.1 157964677 5665900 843373..844707 1 NC_009900.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 844707 radA 5665900 radA Rickettsia massiliae MTU5 DNA repair protein RadA YP_001499501.1 843373 D 416276 CDS YP_001499502.1 157964678 5665901 844704..845018 1 NC_009900.1 hypothetical protein 845018 5665901 RMA_0849 Rickettsia massiliae MTU5 hypothetical protein YP_001499502.1 844704 D 416276 CDS YP_001499503.1 157964679 5665954 845076..845900 1 NC_009900.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 845900 recO 5665954 recO Rickettsia massiliae MTU5 DNA repair protein RecO YP_001499503.1 845076 D 416276 CDS YP_001499504.1 157964680 5665955 846320..847012 1 NC_009900.1 putative glycoprotein endopeptidase 847012 5665955 RMA_0851 Rickettsia massiliae MTU5 putative glycoprotein endopeptidase YP_001499504.1 846320 D 416276 CDS YP_001499505.1 157964681 5665956 complement(847072..848382) 1 NC_009900.1 hypothetical protein 848382 5665956 RMA_0852 Rickettsia massiliae MTU5 hypothetical protein YP_001499505.1 847072 R 416276 CDS YP_001499506.1 157964682 5665939 complement(848756..851251) 1 NC_009900.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 851251 infB 5665939 infB Rickettsia massiliae MTU5 translation initiation factor IF-2 YP_001499506.1 848756 R 416276 CDS YP_001499507.1 157964683 5665940 complement(851490..853001) 1 NC_009900.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 853001 nusA 5665940 nusA Rickettsia massiliae MTU5 transcription elongation factor NusA YP_001499507.1 851490 R 416276 CDS YP_001499508.1 157964684 5665941 complement(853012..853506) 1 NC_009900.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 853506 5665941 RMA_0855 Rickettsia massiliae MTU5 hypothetical protein YP_001499508.1 853012 R 416276 CDS YP_001499509.1 157964685 5665994 complement(853850..854641) 1 NC_009900.1 hypothetical protein 854641 5665994 RMA_0856 Rickettsia massiliae MTU5 hypothetical protein YP_001499509.1 853850 R 416276 CDS YP_001499510.1 157964686 5665800 complement(855390..856163) 1 NC_009900.1 hemolysin A 856163 tlyA 5665800 tlyA Rickettsia massiliae MTU5 hemolysin A YP_001499510.1 855390 R 416276 CDS YP_001499511.1 157964687 5665801 complement(856304..857539) 1 NC_009900.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 857539 tyrS 5665801 tyrS Rickettsia massiliae MTU5 tyrosyl-tRNA synthetase YP_001499511.1 856304 R 416276 CDS YP_001499512.1 157964688 5665802 complement(857543..857827) 1 NC_009900.1 hypothetical protein 857827 5665802 RMA_0861 Rickettsia massiliae MTU5 hypothetical protein YP_001499512.1 857543 R 416276 CDS YP_001499513.1 157964689 5665827 complement(857830..858120) 1 NC_009900.1 hypothetical protein 858120 5665827 RMA_0862 Rickettsia massiliae MTU5 hypothetical protein YP_001499513.1 857830 R 416276 CDS YP_001499514.1 157964690 5665828 complement(858315..858623) 1 NC_009900.1 hypothetical protein 858623 5665828 RMA_0863 Rickettsia massiliae MTU5 hypothetical protein YP_001499514.1 858315 R 416276 CDS YP_001499515.1 157964691 5665829 859298..859831 1 NC_009900.1 hypothetical protein 859831 5665829 RMA_0864 Rickettsia massiliae MTU5 hypothetical protein YP_001499515.1 859298 D 416276 CDS YP_001499516.1 157964692 5666025 complement(864078..864560) 1 NC_009900.1 hypothetical protein 864560 5666025 RMA_0869 Rickettsia massiliae MTU5 hypothetical protein YP_001499516.1 864078 R 416276 CDS YP_001499517.1 157964693 5666055 complement(864625..864906) 1 NC_009900.1 hypothetical protein 864906 5666055 RMA_0870 Rickettsia massiliae MTU5 hypothetical protein YP_001499517.1 864625 R 416276 CDS YP_001499518.1 157964694 5666057 complement(865492..865920) 1 NC_009900.1 hypothetical protein 865920 5666057 RMA_0872 Rickettsia massiliae MTU5 hypothetical protein YP_001499518.1 865492 R 416276 CDS YP_001499519.1 157964695 5665965 868792..874476 1 NC_009900.1 large extracellular alpha-helical protein 874476 5665965 RMA_0876 Rickettsia massiliae MTU5 large extracellular alpha-helical protein YP_001499519.1 868792 D 416276 CDS YP_001499520.1 157964696 5665675 complement(876975..877334) 1 NC_009900.1 competence protein F 877334 comF2 5665675 comF2 Rickettsia massiliae MTU5 competence protein F YP_001499520.1 876975 R 416276 CDS YP_001499521.1 157964697 5665359 complement(879417..880712) 1 NC_009900.1 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase 880712 ubiH 5665359 ubiH Rickettsia massiliae MTU5 2-octaprenyl-6-methoxyphenyl hydroxylase YP_001499521.1 879417 R 416276 CDS YP_001499522.1 157964698 5666162 complement(880684..881019) 1 NC_009900.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit F 881019 5666162 RMA_0887 Rickettsia massiliae MTU5 putative monovalent cation/H+ antiporter subunit F YP_001499522.1 880684 R 416276 CDS YP_001499523.1 157964699 5666163 881489..882925 1 NC_009900.1 nitrogen assimilation regulatory protein NtrX 882925 ntrX 5666163 ntrX Rickettsia massiliae MTU5 nitrogen assimilation regulatory protein NtrX YP_001499523.1 881489 D 416276 CDS YP_001499524.1 157964700 5666164 882894..884663 1 NC_009900.1 hypothetical protein 884663 5666164 RMA_0889 Rickettsia massiliae MTU5 hypothetical protein YP_001499524.1 882894 D 416276 CDS YP_001499525.1 157964701 5666086 complement(884881..885885) 1 NC_009900.1 hypothetical protein 885885 5666086 RMA_0890 Rickettsia massiliae MTU5 hypothetical protein YP_001499525.1 884881 R 416276 CDS YP_001499526.1 157964702 5666087 complement(886517..888313) 1 NC_009900.1 penicillin-binding protein 888313 pbpA1 5666087 pbpA1 Rickettsia massiliae MTU5 penicillin-binding protein YP_001499526.1 886517 R 416276 CDS YP_001499527.1 157964703 5666088 complement(888288..888815) 1 NC_009900.1 hypothetical protein 888815 5666088 RMA_0892 Rickettsia massiliae MTU5 hypothetical protein YP_001499527.1 888288 R 416276 CDS YP_001499528.1 157964704 5665103 complement(889434..891119) 1 NC_009900.1 penicillin-binding protein 891119 pbpA2 5665103 pbpA2 Rickettsia massiliae MTU5 penicillin-binding protein YP_001499528.1 889434 R 416276 CDS YP_001499529.1 157964705 5665104 complement(891463..891864) 1 NC_009900.1 cell division protein FtsL 891864 ftsL 5665104 ftsL Rickettsia massiliae MTU5 cell division protein FtsL YP_001499529.1 891463 R 416276 CDS YP_001499530.1 157964706 5665105 complement(891868..892791) 1 NC_009900.1 S-adenosyl-methyltransferase MraW 892791 mraW 5665105 mraW Rickettsia massiliae MTU5 S-adenosyl-methyltransferase MraW YP_001499530.1 891868 R 416276 CDS YP_001499531.1 157964707 5665683 complement(892791..893297) 1 NC_009900.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 893297 mraZ 5665683 mraZ Rickettsia massiliae MTU5 cell division protein MraZ YP_001499531.1 892791 R 416276 CDS YP_001499532.1 157964708 5666129 894829..896226 1 NC_009900.1 Sodium/pantothenate symporter 896226 panF 5666129 panF Rickettsia massiliae MTU5 Sodium/pantothenate symporter YP_001499532.1 894829 D 416276 CDS YP_001499533.1 157964709 5666130 896288..896611 1 NC_009900.1 hypothetical protein 896611 5666130 RMA_0900 Rickettsia massiliae MTU5 hypothetical protein YP_001499533.1 896288 D 416276 CDS YP_001499534.1 157964710 5665839 complement(896854..898743) 1 NC_009900.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 898743 uvrC 5665839 uvrC Rickettsia massiliae MTU5 excinuclease ABC subunit C YP_001499534.1 896854 R 416276 CDS YP_001499535.1 157964711 5665840 complement(898911..899453) 1 NC_009900.1 hypothetical protein 899453 5665840 RMA_0902 Rickettsia massiliae MTU5 hypothetical protein YP_001499535.1 898911 R 416276 CDS YP_001499536.1 157964712 5665841 complement(899639..900277) 1 NC_009900.1 putative DNA alkylation repair protein 900277 5665841 RMA_0903 Rickettsia massiliae MTU5 putative DNA alkylation repair protein YP_001499536.1 899639 R 416276 CDS YP_001499537.1 157964713 5665686 complement(904647..904856) 1 NC_009900.1 hypothetical protein 904856 5665686 RMA_0908 Rickettsia massiliae MTU5 hypothetical protein YP_001499537.1 904647 R 416276 CDS YP_001499538.1 157964714 5666213 complement(906623..909358) 1 NC_009900.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 909358 secA 5666213 secA Rickettsia massiliae MTU5 preprotein translocase subunit SecA YP_001499538.1 906623 R 416276 CDS YP_001499539.1 157964715 5666231 909577..910425 1 NC_009900.1 protein export protein prsA 910425 prsA 5666231 prsA Rickettsia massiliae MTU5 protein export protein prsA YP_001499539.1 909577 D 416276 CDS YP_001499540.1 157964716 5666232 complement(910633..911028) 1 NC_009900.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 911028 acpS 5666232 acpS Rickettsia massiliae MTU5 4'-phosphopantetheinyl transferase YP_001499540.1 910633 R 416276 CDS YP_001499541.1 157964717 5666245 complement(911029..911517) 1 NC_009900.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 911517 rpoZ 5666245 rpoZ Rickettsia massiliae MTU5 DNA-directed RNA polymerase subunit omega YP_001499541.1 911029 R 416276 CDS YP_001499542.1 157964718 5666246 complement(911583..912842) 1 NC_009900.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 912842 murA 5666246 murA Rickettsia massiliae MTU5 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001499542.1 911583 R 416276 CDS YP_001499543.1 157964719 5666247 complement(913002..915428) 1 NC_009900.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 915428 gyrB 5666247 gyrB Rickettsia massiliae MTU5 DNA gyrase subunit B YP_001499543.1 913002 R 416276 CDS YP_001499544.1 157964720 5666257 915581..916549 1 NC_009900.1 HAD family hydrolase 916549 5666257 RMA_0918 Rickettsia massiliae MTU5 HAD family hydrolase YP_001499544.1 915581 D 416276 CDS YP_001499545.1 157964721 5665704 917056..918426 1 NC_009900.1 magnesium transporter 918426 mgtE 5665704 mgtE Rickettsia massiliae MTU5 magnesium transporter YP_001499545.1 917056 D 416276 CDS YP_001499546.1 157964722 5666265 complement(919666..920010) 1 NC_009900.1 proline/betaine transporter 920010 proP9 5666265 proP9 Rickettsia massiliae MTU5 proline/betaine transporter YP_001499546.1 919666 R 416276 CDS YP_001499547.1 157964723 5665705 complement(921645..921875) 1 NC_009900.1 putative antitoxin of toxin-antitoxin 921875 5665705 RMA_0924 Rickettsia massiliae MTU5 putative antitoxin of toxin-antitoxin YP_001499547.1 921645 R 416276 CDS YP_001499548.1 157964724 5666278 922192..922692 1 NC_009900.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 922692 yajC 5666278 yajC Rickettsia massiliae MTU5 preprotein translocase subunit YajC YP_001499548.1 922192 D 416276 CDS YP_001499549.1 157964725 5666279 922676..924232 1 NC_009900.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 924232 secD 5666279 secD Rickettsia massiliae MTU5 preprotein translocase subunit SecD YP_001499549.1 922676 D 416276 CDS YP_001499550.1 157964726 5664873 924458..925090 1 NC_009900.1 Sco2 protein precursor 925090 5664873 RMA_0927 Rickettsia massiliae MTU5 Sco2 protein precursor YP_001499550.1 924458 D 416276 CDS YP_001499551.1 157964727 5664874 925083..925214 1 NC_009900.1 hypothetical protein 925214 5664874 RMA_0928 Rickettsia massiliae MTU5 hypothetical protein YP_001499551.1 925083 D 416276 CDS YP_001499552.1 157964728 5664875 925177..925578 1 NC_009900.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 925578 ccmE 5664875 ccmE Rickettsia massiliae MTU5 cytochrome c-type biogenesis protein CcmE YP_001499552.1 925177 D 416276 CDS YP_001499553.1 157964729 5665097 925696..926229 1 NC_009900.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 926229 ppa 5665097 ppa Rickettsia massiliae MTU5 inorganic pyrophosphatase YP_001499553.1 925696 D 416276 CDS YP_001499554.1 157964730 5665098 926433..928100 1 NC_009900.1 integral membrane protein MviN 928100 mviN 5665098 mviN Rickettsia massiliae MTU5 integral membrane protein MviN YP_001499554.1 926433 D 416276 CDS YP_001499555.1 157964731 5665099 928078..928833 1 NC_009900.1 F pilin acetylation protein TraX 928833 traX 5665099 traX Rickettsia massiliae MTU5 F pilin acetylation protein TraX YP_001499555.1 928078 D 416276 CDS YP_001499556.1 157964732 5665076 928871..929509 1 NC_009900.1 hypothetical protein 929509 5665076 RMA_0933 Rickettsia massiliae MTU5 hypothetical protein YP_001499556.1 928871 D 416276 CDS YP_001499557.1 157964733 5665077 complement(929724..931865) 1 NC_009900.1 ATP-dependent DNA helicase RecG 931865 recG 5665077 recG Rickettsia massiliae MTU5 ATP-dependent DNA helicase RecG YP_001499557.1 929724 R 416276 CDS YP_001499558.1 157964734 5665124 933321..933962 1 NC_009900.1 succinyl-CoA:3-ketoacid-coenzyme A transferase 933962 scoA 5665124 scoA Rickettsia massiliae MTU5 succinyl-CoA:3-ketoacid-coenzyme A transferase YP_001499558.1 933321 D 416276 CDS YP_001499559.1 157964735 5665125 934019..934549 1 NC_009900.1 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B 934549 scoB 5665125 scoB Rickettsia massiliae MTU5 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B YP_001499559.1 934019 D 416276 CDS YP_001499560.1 157964736 5665140 complement(935288..936886) 1 NC_009900.1 Actin polymerization protein RickA 936886 rickA 5665140 rickA Rickettsia massiliae MTU5 Actin polymerization protein RickA YP_001499560.1 935288 R 416276 CDS YP_001499561.1 157964737 5665191 complement(936998..938107) 1 NC_009900.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 938107 mraY 5665191 mraY Rickettsia massiliae MTU5 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001499561.1 936998 R 416276 CDS YP_001499562.1 157964738 5665192 complement(938286..939635) 1 NC_009900.1 UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase 939635 murF 5665192 murF Rickettsia massiliae MTU5 UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase YP_001499562.1 938286 R 416276 CDS YP_001499563.1 157964739 5665193 complement(939839..941293) 1 NC_009900.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 941293 murE 5665193 murE Rickettsia massiliae MTU5 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001499563.1 939839 R 416276 CDS YP_001499564.1 157964740 5665240 complement(941425..944829) 1 NC_009900.1 transcription-repair coupling factor 944829 mfd 5665240 mfd Rickettsia massiliae MTU5 transcription-repair coupling factor YP_001499564.1 941425 R 416276 CDS YP_001499565.1 157964741 5665241 complement(944805..945068) 1 NC_009900.1 hypothetical protein 945068 5665241 RMA_0946 Rickettsia massiliae MTU5 hypothetical protein YP_001499565.1 944805 R 416276 CDS YP_001499566.1 157964742 5665242 945232..945603 1 NC_009900.1 rhodanese-related sulfurtransferase 945603 pspE 5665242 pspE Rickettsia massiliae MTU5 rhodanese-related sulfurtransferase YP_001499566.1 945232 D 416276 CDS YP_001499567.1 157964743 5665284 945604..946995 1 NC_009900.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 946995 dnaA 5665284 dnaA Rickettsia massiliae MTU5 chromosomal replication initiation protein YP_001499567.1 945604 D 416276 CDS YP_001499568.1 157964744 5665311 949291..950766 1 NC_009900.1 patatin-like phospholipase 950766 pat1 5665311 pat1 Rickettsia massiliae MTU5 patatin-like phospholipase YP_001499568.1 949291 D 416276 CDS YP_001499569.1 157964745 5665465 complement(953048..954202) 1 NC_009900.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 954202 ychF 5665465 ychF Rickettsia massiliae MTU5 GTP-dependent nucleic acid-binding protein EngD YP_001499569.1 953048 R 416276 CDS YP_001499570.1 157964746 5665405 complement(954758..955321) 1 NC_009900.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 955321 pth 5665405 pth Rickettsia massiliae MTU5 peptidyl-tRNA hydrolase YP_001499570.1 954758 R 416276 CDS YP_001499571.1 157964747 5665406 complement(955637..956272) 1 NC_009900.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 956272 rplY 5665406 rplY Rickettsia massiliae MTU5 50S ribosomal protein L25/general stress protein Ctc YP_001499571.1 955637 R 416276 CDS YP_001499572.1 157964748 5665407 complement(957027..957722) 1 NC_009900.1 organic radical activating protein 957722 nrdG 5665407 nrdG Rickettsia massiliae MTU5 organic radical activating protein YP_001499572.1 957027 R 416276 CDS YP_001499573.1 157964749 5665502 957798..958076 1 NC_009900.1 50S ribosomal protein L35 958076 rpmI 5665502 rpmI Rickettsia massiliae MTU5 50S ribosomal protein L35 YP_001499573.1 957798 D 416276 CDS YP_001499574.1 157964750 5665503 958096..958449 1 NC_009900.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 958449 rplT 5665503 rplT Rickettsia massiliae MTU5 50S ribosomal protein L20 YP_001499574.1 958096 D 416276 CDS YP_001499575.1 157964751 5665504 958523..958666 1 NC_009900.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 958666 rpmH 5665504 rpmH Rickettsia massiliae MTU5 50S ribosomal protein L34 YP_001499575.1 958523 D 416276 CDS YP_001499576.1 157964752 5665543 958680..959042 1 NC_009900.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 959042 rnpA 5665543 rnpA Rickettsia massiliae MTU5 ribonuclease P YP_001499576.1 958680 D 416276 CDS YP_001499577.1 157964753 5665544 complement(959502..961028) 1 NC_009900.1 hypothetical protein 961028 5665544 RMA_0967 Rickettsia massiliae MTU5 hypothetical protein YP_001499577.1 959502 R 416276 CDS YP_001499578.1 157964754 5665581 complement(963073..963516) 1 NC_009900.1 transposase 963516 5665581 RMA_0970 Rickettsia massiliae MTU5 transposase YP_001499578.1 963073 R 416276 CDS YP_001499579.1 157964755 5665582 complement(963691..964650) 1 NC_009900.1 magnesium/cobalt transporter CorA 964650 corA 5665582 corA Rickettsia massiliae MTU5 magnesium/cobalt transporter CorA YP_001499579.1 963691 R 416276 CDS YP_001499580.1 157964756 5665637 965072..965515 1 NC_009900.1 transposase 965515 5665637 RMA_0972 Rickettsia massiliae MTU5 transposase YP_001499580.1 965072 D 416276 CDS YP_001499581.1 157964757 5665638 complement(966505..966828) 1 NC_009900.1 transposase 966828 5665638 RMA_0973 Rickettsia massiliae MTU5 transposase YP_001499581.1 966505 R 416276 CDS YP_001499582.1 157964758 5665752 complement(971220..973019) 1 NC_009900.1 nitrogen regulation protein NtrY 973019 ntrY 5665752 ntrY Rickettsia massiliae MTU5 nitrogen regulation protein NtrY YP_001499582.1 971220 R 416276 CDS YP_001499583.1 157964759 5665454 complement(973381..973587) 1 NC_009900.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 973587 rpsU 5665454 rpsU Rickettsia massiliae MTU5 30S ribosomal protein S21 YP_001499583.1 973381 R 416276 CDS YP_001499584.1 157964760 5665455 973615..974271 1 NC_009900.1 hypothetical protein 974271 5665455 RMA_0979 Rickettsia massiliae MTU5 hypothetical protein YP_001499584.1 973615 D 416276 CDS YP_001499585.1 157964761 5665760 975601..978921 1 NC_009900.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 978921 ileS 5665760 ileS Rickettsia massiliae MTU5 isoleucyl-tRNA synthetase YP_001499585.1 975601 D 416276 CDS YP_001499586.1 157964762 5665757 complement(981232..983292) 1 NC_009900.1 Acetyl-CoA carboxylase, biotin carboxylase 983292 accC 5665757 accC Rickettsia massiliae MTU5 Acetyl-CoA carboxylase, biotin carboxylase YP_001499586.1 981232 R 416276 CDS YP_001499587.1 157964763 5665758 complement(983327..984871) 1 NC_009900.1 propionyl-CoA carboxylase subunit beta 984871 pccB 5665758 pccB Rickettsia massiliae MTU5 propionyl-CoA carboxylase subunit beta YP_001499587.1 983327 R 416276 CDS YP_001499588.1 157964764 5665805 complement(985238..985681) 1 NC_009900.1 transposase 985681 5665805 RMA_0987 Rickettsia massiliae MTU5 transposase YP_001499588.1 985238 R 416276 CDS YP_001499589.1 157964765 5665806 986028..989474 1 NC_009900.1 Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein; acylglycerophosphoethanolamine acyltransferase 989474 aas 5665806 aas Rickettsia massiliae MTU5 acylglycerophosphoethanolamine acyltransferase YP_001499589.1 986028 D 416276 CDS YP_001499590.1 157964766 5665807 complement(989726..990010) 1 NC_009900.1 regulator of competence-specific genes TfoX 990010 tfoX 5665807 tfoX Rickettsia massiliae MTU5 regulator of competence-specific genes TfoX YP_001499590.1 989726 R 416276 CDS YP_001499591.1 157964767 5665848 complement(989950..990711) 1 NC_009900.1 Zinc/manganese ABC transporter permease protein 990711 znuB 5665848 znuB Rickettsia massiliae MTU5 Zinc/manganese ABC transporter permease protein YP_001499591.1 989950 R 416276 CDS YP_001499592.1 157964768 5665849 990846..991715 1 NC_009900.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 991715 ubiG 5665849 ubiG Rickettsia massiliae MTU5 3-demethylubiquinone-9 3-methyltransferase YP_001499592.1 990846 D 416276 CDS YP_001499593.1 157964769 5665850 991932..993473 1 NC_009900.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 993473 gltX 5665850 gltX Rickettsia massiliae MTU5 glutamyl-tRNA synthetase YP_001499593.1 991932 D 416276 CDS YP_001499594.1 157964770 5665882 993470..994006 1 NC_009900.1 hypothetical protein 994006 5665882 RMA_0993 Rickettsia massiliae MTU5 hypothetical protein YP_001499594.1 993470 D 416276 CDS YP_001499595.1 157964771 5665883 complement(994632..995075) 1 NC_009900.1 transposase 995075 5665883 RMA_0994 Rickettsia massiliae MTU5 transposase YP_001499595.1 994632 R 416276 CDS YP_001499596.1 157964772 5665884 995884..996588 1 NC_009900.1 guanosine polyphosphate pyrophosphohydrolase/synthetase 996588 spoT14 5665884 spoT14 Rickettsia massiliae MTU5 guanosine polyphosphate pyrophosphohydrolase/synthetase YP_001499596.1 995884 D 416276 CDS YP_001499597.1 157964773 5665885 complement(996713..997132) 1 NC_009900.1 guanosine polyphosphate pyrophosphohydrolase/synthetase 997132 spoT12 5665885 spoT12 Rickettsia massiliae MTU5 guanosine polyphosphate pyrophosphohydrolase/synthetase YP_001499597.1 996713 R 416276 CDS YP_001499598.1 157964774 5665886 complement(998092..999762) 1 NC_009900.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 999762 groEL 5665886 groEL Rickettsia massiliae MTU5 chaperonin GroEL YP_001499598.1 998092 R 416276 CDS YP_001499599.1 157964775 5665887 complement(999762..1000061) 1 NC_009900.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 1000061 groES 5665887 groES Rickettsia massiliae MTU5 co-chaperonin GroES YP_001499599.1 999762 R 416276 CDS YP_001499600.1 157964776 5666033 complement(1004948..1005700) 1 NC_009900.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 1005700 rph 5666033 rph Rickettsia massiliae MTU5 ribonuclease PH YP_001499600.1 1004948 R 416276 CDS YP_001499601.1 157964777 5666034 1005846..1006430 1 NC_009900.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 1006430 grpE 5666034 grpE Rickettsia massiliae MTU5 heat shock protein GrpE YP_001499601.1 1005846 D 416276 CDS YP_001499602.1 157964778 5666112 1006450..1007628 1 NC_009900.1 permease PerM-like protein 1007628 perM 5666112 perM Rickettsia massiliae MTU5 permease PerM-like protein YP_001499602.1 1006450 D 416276 CDS YP_001499603.1 157964779 5666113 1007632..1008315 1 NC_009900.1 hypothetical protein 1008315 5666113 RMA_1009 Rickettsia massiliae MTU5 hypothetical protein YP_001499603.1 1007632 D 416276 CDS YP_001499604.1 157964780 5666206 complement(1011739..1012026) 1 NC_009900.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1012026 rpsT 5666206 rpsT Rickettsia massiliae MTU5 30S ribosomal protein S20 YP_001499604.1 1011739 R 416276 CDS YP_001499605.1 157964781 5665619 complement(1012030..1012440) 1 NC_009900.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 1012440 rplQ 5665619 rplQ Rickettsia massiliae MTU5 50S ribosomal protein L17 YP_001499605.1 1012030 R 416276 CDS YP_001499606.1 157964782 5665620 complement(1012451..1013473) 1 NC_009900.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1013473 rpoA 5665620 rpoA Rickettsia massiliae MTU5 DNA-directed RNA polymerase subunit alpha YP_001499606.1 1012451 R 416276 CDS YP_001499607.1 157964783 5665781 complement(1013492..1013878) 1 NC_009900.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1013878 rpsK 5665781 rpsK Rickettsia massiliae MTU5 30S ribosomal protein S11 YP_001499607.1 1013492 R 416276 CDS YP_001499608.1 157964784 5665782 complement(1013900..1014277) 1 NC_009900.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1014277 rpsM 5665782 rpsM Rickettsia massiliae MTU5 30S ribosomal protein S13 YP_001499608.1 1013900 R 416276 CDS YP_001499609.1 157964785 5665783 complement(1014338..1014979) 1 NC_009900.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1014979 adk 5665783 adk Rickettsia massiliae MTU5 adenylate kinase YP_001499609.1 1014338 R 416276 CDS YP_001499610.1 157964786 5664901 complement(1014992..1016293) 1 NC_009900.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 1016293 secY 5664901 secY Rickettsia massiliae MTU5 preprotein translocase subunit SecY YP_001499610.1 1014992 R 416276 CDS YP_001499611.1 157964787 5664902 complement(1016297..1016758) 1 NC_009900.1 late assembly protein; 50S ribosomal protein L15 1016758 rplO 5664902 rplO Rickettsia massiliae MTU5 50S ribosomal protein L15 YP_001499611.1 1016297 R 416276 CDS YP_001499612.1 157964788 5664903 complement(1016772..1016963) 1 NC_009900.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 1016963 rpmD 5664903 rpmD Rickettsia massiliae MTU5 50S ribosomal protein L30 YP_001499612.1 1016772 R 416276 CDS YP_001499613.1 157964789 5665921 complement(1016987..1017541) 1 NC_009900.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1017541 rpsE 5665921 rpsE Rickettsia massiliae MTU5 30S ribosomal protein S5 YP_001499613.1 1016987 R 416276 CDS YP_001499614.1 157964790 5665922 complement(1017535..1017894) 1 NC_009900.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 1017894 rplR 5665922 rplR Rickettsia massiliae MTU5 50S ribosomal protein L18 YP_001499614.1 1017535 R 416276 CDS YP_001499615.1 157964791 5665923 complement(1017910..1018443) 1 NC_009900.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 1018443 rplF 5665923 rplF Rickettsia massiliae MTU5 50S ribosomal protein L6 YP_001499615.1 1017910 R 416276 CDS YP_001499616.1 157964792 5666228 complement(1018453..1018851) 1 NC_009900.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 1018851 rpsH 5666228 rpsH Rickettsia massiliae MTU5 30S ribosomal protein S8 YP_001499616.1 1018453 R 416276 CDS YP_001499617.1 157964793 5666229 complement(1018871..1019194) 1 NC_009900.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 1019194 rpsN 5666229 rpsN Rickettsia massiliae MTU5 30S ribosomal protein S14 YP_001499617.1 1018871 R 416276 CDS YP_001499618.1 157964794 5666230 complement(1019194..1019736) 1 NC_009900.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1019736 rplE 5666230 rplE Rickettsia massiliae MTU5 50S ribosomal protein L5 YP_001499618.1 1019194 R 416276 CDS YP_001499619.1 157964795 5666026 complement(1019733..1020062) 1 NC_009900.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 1020062 rplX 5666026 rplX Rickettsia massiliae MTU5 50S ribosomal protein L24 YP_001499619.1 1019733 R 416276 CDS YP_001499620.1 157964796 5666027 complement(1020063..1020431) 1 NC_009900.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 1020431 rplN 5666027 rplN Rickettsia massiliae MTU5 50S ribosomal protein L14 YP_001499620.1 1020063 R 416276 CDS YP_001499621.1 157964797 5666028 complement(1020506..1020757) 1 NC_009900.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 1020757 rpsQ 5666028 rpsQ Rickettsia massiliae MTU5 30S ribosomal protein S17 YP_001499621.1 1020506 R 416276 CDS YP_001499622.1 157964798 5664881 complement(1020741..1020956) 1 NC_009900.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 1020956 rpmC 5664881 rpmC Rickettsia massiliae MTU5 50S ribosomal protein L29 YP_001499622.1 1020741 R 416276 CDS YP_001499623.1 157964799 5664882 complement(1020949..1021374) 1 NC_009900.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 1021374 rplP 5664882 rplP Rickettsia massiliae MTU5 50S ribosomal protein L16 YP_001499623.1 1020949 R 416276 CDS YP_001499624.1 157964800 5664883 complement(1021374..1022054) 1 NC_009900.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 1022054 rpsC 5664883 rpsC Rickettsia massiliae MTU5 30S ribosomal protein S3 YP_001499624.1 1021374 R 416276 CDS YP_001499625.1 157964801 5664898 complement(1022029..1022394) 1 NC_009900.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 1022394 rplV 5664898 rplV Rickettsia massiliae MTU5 50S ribosomal protein L22 YP_001499625.1 1022029 R 416276 CDS YP_001499626.1 157964802 5664899 complement(1022397..1022681) 1 NC_009900.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 1022681 rpsS 5664899 rpsS Rickettsia massiliae MTU5 30S ribosomal protein S19 YP_001499626.1 1022397 R 416276 CDS YP_001499627.1 157964803 5664900 complement(1022700..1023521) 1 NC_009900.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 1023521 rplB 5664900 rplB Rickettsia massiliae MTU5 50S ribosomal protein L2 YP_001499627.1 1022700 R 416276 CDS YP_001499628.1 157964804 5664944 complement(1023522..1023869) 1 NC_009900.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 1023869 rplW 5664944 rplW Rickettsia massiliae MTU5 50S ribosomal protein L23 YP_001499628.1 1023522 R 416276 CDS YP_001499629.1 157964805 5664945 complement(1023815..1024444) 1 NC_009900.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 1024444 rplD 5664945 rplD Rickettsia massiliae MTU5 50S ribosomal protein L4 YP_001499629.1 1023815 R 416276 CDS YP_001499630.1 157964806 5664946 complement(1024551..1025198) 1 NC_009900.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 1025198 rplC 5664946 rplC Rickettsia massiliae MTU5 50S ribosomal protein L3 YP_001499630.1 1024551 R 416276 CDS YP_001499631.1 157964807 5664972 complement(1025199..1025516) 1 NC_009900.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 1025516 rpsJ 5664972 rpsJ Rickettsia massiliae MTU5 30S ribosomal protein S10 YP_001499631.1 1025199 R 416276 CDS YP_001499632.1 157964808 5664973 complement(1025763..1026965) 1 NC_009900.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1026965 tuf 5664973 tuf Rickettsia massiliae MTU5 elongation factor Tu YP_001499632.1 1025763 R 416276 CDS YP_001499633.1 157964809 5666185 1027514..1028284 1 NC_009900.1 tRNA/rRNA methyltransferase 1028284 5666185 RMA_1043 Rickettsia massiliae MTU5 tRNA/rRNA methyltransferase YP_001499633.1 1027514 D 416276 CDS YP_001499634.1 157964810 5664989 1028386..1028838 1 NC_009900.1 hypothetical protein 1028838 5664989 RMA_1044 Rickettsia massiliae MTU5 hypothetical protein YP_001499634.1 1028386 D 416276 CDS YP_001499635.1 157964811 5664990 1028835..1030226 1 NC_009900.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1030226 fumC 5664990 fumC Rickettsia massiliae MTU5 fumarate hydratase YP_001499635.1 1028835 D 416276 CDS YP_001499636.1 157964812 5664991 1030295..1030576 1 NC_009900.1 antitoxin of toxin-antitoxin 1030576 5664991 RMA_1046 Rickettsia massiliae MTU5 antitoxin of toxin-antitoxin YP_001499636.1 1030295 D 416276 CDS YP_001499637.1 157964813 5665032 1030570..1030998 1 NC_009900.1 toxin of toxin-antitoxin 1030998 5665032 RMA_1047 Rickettsia massiliae MTU5 toxin of toxin-antitoxin YP_001499637.1 1030570 D 416276 CDS YP_001499638.1 157964814 5665033 1031237..1032598 1 NC_009900.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1032598 ftsZ 5665033 ftsZ Rickettsia massiliae MTU5 cell division protein FtsZ YP_001499638.1 1031237 D 416276 CDS YP_001499639.1 157964815 5665159 complement(1034151..1034726) 1 NC_009900.1 NifU-like protein 1034726 5665159 RMA_1051 Rickettsia massiliae MTU5 NifU-like protein YP_001499639.1 1034151 R 416276 CDS YP_001499640.1 157964816 5665160 complement(1035164..1036411) 1 NC_009900.1 AmpG protein 1036411 ampG2 5665160 ampG2 Rickettsia massiliae MTU5 AmpG protein YP_001499640.1 1035164 R 416276 CDS YP_001499641.1 157964817 5665213 complement(1036584..1037831) 1 NC_009900.1 ATP-dependent RNA helicase RhlE 1037831 rhlE 5665213 rhlE Rickettsia massiliae MTU5 ATP-dependent RNA helicase RhlE YP_001499641.1 1036584 R 416276 CDS YP_001499642.1 157964818 5665214 complement(1038334..1038576) 1 NC_009900.1 cold shock-like protein 1038576 cspA 5665214 cspA Rickettsia massiliae MTU5 cold shock-like protein YP_001499642.1 1038334 R 416276 CDS YP_001499643.1 157964819 5665215 1038659..1038790 1 NC_009900.1 hypothetical protein 1038790 5665215 RMA_1055 Rickettsia massiliae MTU5 hypothetical protein YP_001499643.1 1038659 D 416276 CDS YP_001499644.1 157964820 5666197 complement(1039981..1040979) 1 NC_009900.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 1040979 ksgA 5666197 ksgA Rickettsia massiliae MTU5 dimethyladenosine transferase YP_001499644.1 1039981 R 416276 CDS YP_001499645.1 157964821 5665250 complement(1041049..1041960) 1 NC_009900.1 hypothetical protein 1041960 5665250 RMA_1057 Rickettsia massiliae MTU5 hypothetical protein YP_001499645.1 1041049 R 416276 CDS YP_001499646.1 157964822 5665251 complement(1042092..1044233) 1 NC_009900.1 organic solvent tolerance protein-like protein 1044233 ostA 5665251 ostA Rickettsia massiliae MTU5 organic solvent tolerance protein-like protein YP_001499646.1 1042092 R 416276 CDS YP_001499647.1 157964823 5665305 1044460..1045836 1 NC_009900.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1045836 xseA 5665305 xseA Rickettsia massiliae MTU5 exodeoxyribonuclease VII large subunit YP_001499647.1 1044460 D 416276 CDS YP_001499648.1 157964824 5665306 1045996..1046373 1 NC_009900.1 hypothetical protein 1046373 5665306 RMA_1060 Rickettsia massiliae MTU5 hypothetical protein YP_001499648.1 1045996 D 416276 CDS YP_001499649.1 157964825 5665328 1047212..1048018 1 NC_009900.1 exodeoxyribonuclease III 1048018 xth2 5665328 xth2 Rickettsia massiliae MTU5 exodeoxyribonuclease III YP_001499649.1 1047212 D 416276 CDS YP_001499650.1 157964826 5665329 1048375..1049826 1 NC_009900.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1049826 engA 5665329 engA Rickettsia massiliae MTU5 GTP-binding protein EngA YP_001499650.1 1048375 D 416276 CDS YP_001499651.1 157964827 5665396 complement(1052653..1054089) 1 NC_009900.1 2-polyprenylphenol 6-hydroxylase 1054089 ubiB 5665396 ubiB Rickettsia massiliae MTU5 2-polyprenylphenol 6-hydroxylase YP_001499651.1 1052653 R 416276 CDS YP_001499652.1 157964828 5665397 complement(1054237..1054983) 1 NC_009900.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 1054983 ubiE 5665397 ubiE Rickettsia massiliae MTU5 ubiquinone/menaquinone biosynthesis methyltransferase YP_001499652.1 1054237 R 416276 CDS YP_001499653.1 157964829 5665398 1055012..1055851 1 NC_009900.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 1055851 mutM 5665398 mutM Rickettsia massiliae MTU5 formamidopyrimidine-DNA glycosylase YP_001499653.1 1055012 D 416276 CDS YP_001499654.1 157964830 5665511 complement(1057194..1057637) 1 NC_009900.1 transposase 1057637 5665511 RMA_1074 Rickettsia massiliae MTU5 transposase YP_001499654.1 1057194 R 416276 CDS YP_001499655.1 157964831 5665513 complement(1058684..1060114) 1 NC_009900.1 Poly-beta-hydroxyalkanoate depolymerase 1060114 5665513 RMA_1076 Rickettsia massiliae MTU5 Poly-beta-hydroxyalkanoate depolymerase YP_001499655.1 1058684 R 416276 CDS YP_001499656.1 157964832 5665568 complement(1061312..1062283) 1 NC_009900.1 putative deoxyribonuclease TatD 1062283 tatD 5665568 tatD Rickettsia massiliae MTU5 putative deoxyribonuclease TatD YP_001499656.1 1061312 R 416276 CDS YP_001499657.1 157964833 5665569 complement(1062336..1063862) 1 NC_009900.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1063862 metG 5665569 metG Rickettsia massiliae MTU5 methionyl-tRNA synthetase YP_001499657.1 1062336 R 416276 CDS YP_001499658.1 157964834 5665570 complement(1063859..1064470) 1 NC_009900.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1064470 tmk 5665570 tmk Rickettsia massiliae MTU5 thymidylate kinase YP_001499658.1 1063859 R 416276 CDS YP_001499659.1 157964835 5665634 1064729..1066093 1 NC_009900.1 proline/betaine transporter 1066093 proP4 5665634 proP4 Rickettsia massiliae MTU5 proline/betaine transporter YP_001499659.1 1064729 D 416276 CDS YP_001499660.1 157964836 5665635 complement(1066253..1067143) 1 NC_009900.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; 4-hydroxybenzoate polyprenyltransferase 1067143 ubiA 5665635 ubiA Rickettsia massiliae MTU5 4-hydroxybenzoate polyprenyltransferase YP_001499660.1 1066253 R 416276 CDS YP_001499661.1 157964837 5665622 1068146..1070671 1 NC_009900.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1070671 valS 5665622 valS Rickettsia massiliae MTU5 valyl-tRNA synthetase YP_001499661.1 1068146 D 416276 CDS YP_001499662.1 157964838 5665623 1070640..1071392 1 NC_009900.1 LPS biosynthesis protein 1071392 5665623 RMA_1088 Rickettsia massiliae MTU5 LPS biosynthesis protein YP_001499662.1 1070640 D 416276 CDS YP_001499663.1 157964839 5665606 1071445..1072278 1 NC_009900.1 LPS biosynthesis protein 1072278 5665606 RMA_1089 Rickettsia massiliae MTU5 LPS biosynthesis protein YP_001499663.1 1071445 D 416276 CDS YP_001499664.1 157964840 5665644 1074013..1075311 1 NC_009900.1 RmuC family protein 1075311 5665644 RMA_1093 Rickettsia massiliae MTU5 RmuC family protein YP_001499664.1 1074013 D 416276 CDS YP_001499665.1 157964841 5665776 1079240..1080067 1 NC_009900.1 putative oxidoreductase protein 1080067 5665776 RMA_1102 Rickettsia massiliae MTU5 putative oxidoreductase protein YP_001499665.1 1079240 D 416276 CDS YP_001499666.1 157964842 5665795 complement(1080850..1082127) 1 NC_009900.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1082127 clpX 5665795 clpX Rickettsia massiliae MTU5 ATP-dependent protease ATP-binding subunit ClpX YP_001499666.1 1080850 R 416276 CDS YP_001499667.1 157964843 5665796 complement(1082164..1082715) 1 NC_009900.1 ribosomal-protein-alanine acetyltransferase 1082715 rimJ 5665796 rimJ Rickettsia massiliae MTU5 ribosomal-protein-alanine acetyltransferase YP_001499667.1 1082164 R 416276 CDS YP_001499668.1 157964844 5665797 complement(1082881..1083597) 1 NC_009900.1 trans-regulatory protein ExsB 1083597 exsB 5665797 exsB Rickettsia massiliae MTU5 trans-regulatory protein ExsB YP_001499668.1 1082881 R 416276 CDS YP_001499669.1 157964845 5665845 complement(1083564..1083899) 1 NC_009900.1 HicB-like protein 1083899 5665845 RMA_1107 Rickettsia massiliae MTU5 HicB-like protein YP_001499669.1 1083564 R 416276 CDS YP_001499670.1 157964846 5666198 1084479..1086209 1 NC_009900.1 multidrug resistance protein 1086209 msbA2 5666198 msbA2 Rickettsia massiliae MTU5 multidrug resistance protein YP_001499670.1 1084479 D 416276 CDS YP_001499671.1 157964847 5665847 1086473..1086772 1 NC_009900.1 hypothetical protein 1086772 5665847 RMA_1109 Rickettsia massiliae MTU5 hypothetical protein YP_001499671.1 1086473 D 416276 CDS YP_001499672.1 157964848 5665897 1087441..1088616 1 NC_009900.1 MFS-type bicyclomycin resistance protein 1088616 bcr2 5665897 bcr2 Rickettsia massiliae MTU5 MFS-type bicyclomycin resistance protein YP_001499672.1 1087441 D 416276 CDS YP_001499673.1 157964849 5665898 1088690..1090045 1 NC_009900.1 lipoprotein releasing system, transmembrane protein, LolC/E family protein 1090045 5665898 RMA_1111 Rickettsia massiliae MTU5 lipoprotein releasing system, transmembrane protein, LolC/E family protein YP_001499673.1 1088690 D 416276 CDS YP_001499674.1 157964850 5665899 1090038..1090703 1 NC_009900.1 lipoprotein releasing system ATP-binding protein LolD 1090703 lolD 5665899 lolD Rickettsia massiliae MTU5 lipoprotein releasing system ATP-binding protein LolD YP_001499674.1 1090038 D 416276 CDS YP_001499675.1 157964851 5665973 1090915..1092813 1 NC_009900.1 hypothetical protein 1092813 5665973 RMA_1113 Rickettsia massiliae MTU5 hypothetical protein YP_001499675.1 1090915 D 416276 CDS YP_001499676.1 157964852 5665974 1092888..1094162 1 NC_009900.1 hemolysin-like protein 1094162 5665974 RMA_1114 Rickettsia massiliae MTU5 hemolysin-like protein YP_001499676.1 1092888 D 416276 CDS YP_001499677.1 157964853 5665975 1094155..1096146 1 NC_009900.1 cytochrome c-type biogenesis protein ccmF 1096146 ccmF 5665975 ccmF Rickettsia massiliae MTU5 cytochrome c-type biogenesis protein ccmF YP_001499677.1 1094155 D 416276 CDS YP_001499678.1 157964854 5666066 complement(1098578..1103545) 1 NC_009900.1 outer membrane protein OmpB 1103545 ompB 5666066 ompB Rickettsia massiliae MTU5 outer membrane protein OmpB YP_001499678.1 1098578 R 416276 CDS YP_001499679.1 157964855 5666081 complement(1103850..1104455) 1 NC_009900.1 guanosine polyphosphate pyrophosphohydrolase/synthetase 1104455 spoT11 5666081 spoT11 Rickettsia massiliae MTU5 guanosine polyphosphate pyrophosphohydrolase/synthetase YP_001499679.1 1103850 R 416276 CDS YP_001499680.1 157964856 5666082 complement(1104524..1104967) 1 NC_009900.1 transposase 1104967 5666082 RMA_1120 Rickettsia massiliae MTU5 transposase YP_001499680.1 1104524 R 416276 CDS YP_001499681.1 157964857 5666083 complement(1105441..1106424) 1 NC_009900.1 Beta-glucosidase 1106424 5666083 RMA_1121 Rickettsia massiliae MTU5 Beta-glucosidase YP_001499681.1 1105441 R 416276 CDS YP_001499682.1 157964858 5666098 complement(1106428..1106814) 1 NC_009900.1 hypothetical protein 1106814 5666098 RMA_1122 Rickettsia massiliae MTU5 hypothetical protein YP_001499682.1 1106428 R 416276 CDS YP_001499683.1 157964859 5666099 complement(1106947..1107306) 1 NC_009900.1 integration host factor alpha-subunit 1107306 himA 5666099 himA Rickettsia massiliae MTU5 integration host factor alpha-subunit YP_001499683.1 1106947 R 416276 CDS YP_001499684.1 157964860 5666100 1107819..1108331 1 NC_009900.1 bacterioferritin comigratory protein 1108331 bcp 5666100 bcp Rickettsia massiliae MTU5 bacterioferritin comigratory protein YP_001499684.1 1107819 D 416276 CDS YP_001499685.1 157964861 5666118 complement(1108442..1109314) 1 NC_009900.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 1109314 htrB 5666118 htrB Rickettsia massiliae MTU5 lipid A biosynthesis lauroyl acyltransferase YP_001499685.1 1108442 R 416276 CDS YP_001499686.1 157964862 5666119 complement(1109277..1110254) 1 NC_009900.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1110254 lpxK 5666119 lpxK Rickettsia massiliae MTU5 tetraacyldisaccharide 4'-kinase YP_001499686.1 1109277 R 416276 CDS YP_001499687.1 157964863 5666120 complement(1110258..1111133) 1 NC_009900.1 hypothetical protein 1111133 5666120 RMA_1127 Rickettsia massiliae MTU5 hypothetical protein YP_001499687.1 1110258 R 416276 CDS YP_001499688.1 157964864 5665824 complement(1112005..1114074) 1 NC_009900.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 1114074 ligA 5665824 ligA Rickettsia massiliae MTU5 NAD-dependent DNA ligase LigA YP_001499688.1 1112005 R 416276 CDS YP_001499689.1 157964865 5665826 complement(1114360..1115445) 1 NC_009900.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1115445 tgt 5665826 tgt Rickettsia massiliae MTU5 queuine tRNA-ribosyltransferase YP_001499689.1 1114360 R 416276 CDS YP_001499690.1 157964866 5664872 1118228..1118578 1 NC_009900.1 hypothetical protein 1118578 5664872 RMA_1139 Rickettsia massiliae MTU5 hypothetical protein YP_001499690.1 1118228 D 416276 CDS YP_001499691.1 157964867 5665177 complement(1119901..1120350) 1 NC_009900.1 ABC transporter substrate binding protein 1120350 5665177 RMA_1143 Rickettsia massiliae MTU5 ABC transporter substrate binding protein YP_001499691.1 1119901 R 416276 CDS YP_001499692.1 157964868 5665178 complement(1120375..1120674) 1 NC_009900.1 hypothetical protein 1120674 5665178 RMA_1144 Rickettsia massiliae MTU5 hypothetical protein YP_001499692.1 1120375 R 416276 CDS YP_001499693.1 157964869 5665179 complement(1120662..1121129) 1 NC_009900.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 1121129 rnhA 5665179 rnhA Rickettsia massiliae MTU5 ribonuclease H YP_001499693.1 1120662 R 416276 CDS YP_001499694.1 157964870 5665930 complement(1121129..1121641) 1 NC_009900.1 hypothetical protein 1121641 5665930 RMA_1146 Rickettsia massiliae MTU5 hypothetical protein YP_001499694.1 1121129 R 416276 CDS YP_001499695.1 157964871 5666193 1122366..1123193 1 NC_009900.1 hypothetical protein 1123193 5666193 RMA_1147 Rickettsia massiliae MTU5 hypothetical protein YP_001499695.1 1122366 D 416276 CDS YP_001499696.1 157964872 5665932 1123187..1123762 1 NC_009900.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 1123762 coaE 5665932 coaE Rickettsia massiliae MTU5 dephospho-CoA kinase YP_001499696.1 1123187 D 416276 CDS YP_001499697.1 157964873 5665863 1123750..1124439 1 NC_009900.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 1124439 dnaQ 5665863 dnaQ Rickettsia massiliae MTU5 DNA polymerase III subunit epsilon YP_001499697.1 1123750 D 416276 CDS YP_001499698.1 157964874 5665864 1124544..1125302 1 NC_009900.1 Surfeit locus protein 1 1125302 surf1 5665864 surf1 Rickettsia massiliae MTU5 Surfeit locus protein 1 YP_001499698.1 1124544 D 416276 CDS YP_001499699.1 157964875 5665865 1125358..1127826 1 NC_009900.1 ATP-dependent helicase 1127826 5665865 RMA_1151 Rickettsia massiliae MTU5 ATP-dependent helicase YP_001499699.1 1125358 D 416276 CDS YP_001499700.1 157964876 5664999 1128593..1129549 1 NC_009900.1 malonyl CoA-acyl carrier protein transacylase 1129549 fabD 5664999 fabD Rickettsia massiliae MTU5 malonyl CoA-acyl carrier protein transacylase YP_001499700.1 1128593 D 416276 CDS YP_001499701.1 157964877 5664926 complement(1135438..1136502) 1 NC_009900.1 Poly-beta-hydroxybutyrate polymerase 1136502 phbC 5664926 phbC Rickettsia massiliae MTU5 Poly-beta-hydroxybutyrate polymerase YP_001499701.1 1135438 R 416276 CDS YP_001499702.1 157964878 5664927 1136698..1138200 1 NC_009900.1 ATP/ADP translocase 1138200 tlc5 5664927 tlc5 Rickettsia massiliae MTU5 ATP/ADP translocase YP_001499702.1 1136698 D 416276 CDS YP_001499703.1 157964879 5665161 complement(1138725..1139156) 1 NC_009900.1 (di)nucleoside polyphosphate hydrolase-like protein 1139156 5665161 RMA_1167 Rickettsia massiliae MTU5 (di)nucleoside polyphosphate hydrolase-like protein YP_001499703.1 1138725 R 416276 CDS YP_001499704.1 157964880 5665162 complement(1139725..1140636) 1 NC_009900.1 hemolysin C 1140636 tlyC 5665162 tlyC Rickettsia massiliae MTU5 hemolysin C YP_001499704.1 1139725 R 416276 CDS YP_001499705.1 157964881 5665163 complement(1140641..1141174) 1 NC_009900.1 putative metalloprotease 1141174 5665163 RMA_1169 Rickettsia massiliae MTU5 putative metalloprotease YP_001499705.1 1140641 R 416276 CDS YP_001499706.1 157964882 5665155 complement(1141171..1141374) 1 NC_009900.1 PemK-like growth inhibitor 1141374 5665155 RMA_1170 Rickettsia massiliae MTU5 PemK-like growth inhibitor YP_001499706.1 1141171 R 416276 CDS YP_001499707.1 157964883 5665156 complement(1141829..1142719) 1 NC_009900.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 1142719 lipA 5665156 lipA Rickettsia massiliae MTU5 lipoyl synthase YP_001499707.1 1141829 R 416276 CDS YP_001499708.1 157964884 5665157 complement(1142712..1143974) 1 NC_009900.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1143974 glyA 5665157 glyA Rickettsia massiliae MTU5 serine hydroxymethyltransferase YP_001499708.1 1142712 R 416276 CDS YP_001499709.1 157964885 5665085 complement(1144091..1144741) 1 NC_009900.1 Serine esterase 1144741 5665085 RMA_1173 Rickettsia massiliae MTU5 Serine esterase YP_001499709.1 1144091 R 416276 CDS YP_001499710.1 157964886 5665086 complement(1144901..1145383) 1 NC_009900.1 glutaredoxin-like protein grla 1145383 grxC2 5665086 grxC2 Rickettsia massiliae MTU5 glutaredoxin-like protein grla YP_001499710.1 1144901 R 416276 CDS YP_001499711.1 157964887 5665087 1145274..1145906 1 NC_009900.1 endonuclease III 1145906 nth 5665087 nth Rickettsia massiliae MTU5 endonuclease III YP_001499711.1 1145274 D 416276 CDS YP_001499712.1 157964888 5665340 complement(1146979..1147350) 1 NC_009900.1 hypothetical protein 1147350 5665340 RMA_1177 Rickettsia massiliae MTU5 hypothetical protein YP_001499712.1 1146979 R 416276 CDS YP_001499713.1 157964889 5665341 1147500..1147712 1 NC_009900.1 hypothetical protein 1147712 5665341 RMA_1178 Rickettsia massiliae MTU5 hypothetical protein YP_001499713.1 1147500 D 416276 CDS YP_001499714.1 157964890 5665245 complement(1148370..1148603) 1 NC_009900.1 hypothetical protein 1148603 5665245 RMA_1181 Rickettsia massiliae MTU5 hypothetical protein YP_001499714.1 1148370 R 416276 CDS YP_001499715.1 157964891 5665417 complement(1148747..1149592) 1 NC_009900.1 putative methyltransferase 1149592 5665417 RMA_1182 Rickettsia massiliae MTU5 putative methyltransferase YP_001499715.1 1148747 R 416276 CDS YP_001499716.1 157964892 5665418 1149581..1150735 1 NC_009900.1 ABC transporter substrate-binding protein 1150735 5665418 RMA_1183 Rickettsia massiliae MTU5 ABC transporter substrate-binding protein YP_001499716.1 1149581 D 416276 CDS YP_001499717.1 157964893 5665419 complement(1150896..1151060) 1 NC_009900.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 1151060 tatA 5665419 tatA Rickettsia massiliae MTU5 twin arginine translocase protein A YP_001499717.1 1150896 R 416276 CDS YP_001499718.1 157964894 5665132 1151123..1151734 1 NC_009900.1 phosphatidylglycerophosphatase A 1151734 pgpA 5665132 pgpA Rickettsia massiliae MTU5 phosphatidylglycerophosphatase A YP_001499718.1 1151123 D 416276 CDS YP_001499719.1 157964895 5665133 1151802..1152140 1 NC_009900.1 50S ribosomal protein L21 1152140 rplU 5665133 rplU Rickettsia massiliae MTU5 50S ribosomal protein L21 YP_001499719.1 1151802 D 416276 CDS YP_001499720.1 157964896 5665134 1152165..1152428 1 NC_009900.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1152428 rpmA 5665134 rpmA Rickettsia massiliae MTU5 50S ribosomal protein L27 YP_001499720.1 1152165 D 416276 CDS YP_001499721.1 157964897 5665440 1152690..1153919 1 NC_009900.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1153919 lysC 5665440 lysC Rickettsia massiliae MTU5 aspartate kinase YP_001499721.1 1152690 D 416276 CDS YP_001499722.1 157964898 5665441 1154185..1154697 1 NC_009900.1 hypothetical protein 1154697 5665441 RMA_1189 Rickettsia massiliae MTU5 hypothetical protein YP_001499722.1 1154185 D 416276 CDS YP_001499723.1 157964899 5665442 1155183..1155818 1 NC_009900.1 beta-lactamase 1155818 5665442 RMA_1190 Rickettsia massiliae MTU5 beta-lactamase YP_001499723.1 1155183 D 416276 CDS YP_001499724.1 157964900 5665558 complement(1156680..1158017) 1 NC_009900.1 proline/betaine transporter 1158017 proP5 5665558 proP5 Rickettsia massiliae MTU5 proline/betaine transporter YP_001499724.1 1156680 R 416276 CDS YP_001499725.1 157964901 5665559 complement(1158147..1158269) 1 NC_009900.1 hypothetical protein 1158269 5665559 RMA_1193 Rickettsia massiliae MTU5 hypothetical protein YP_001499725.1 1158147 R 416276 CDS YP_001499726.1 157964902 5665426 complement(1158247..1158570) 1 NC_009900.1 hypothetical protein 1158570 5665426 RMA_1194 Rickettsia massiliae MTU5 hypothetical protein YP_001499726.1 1158247 R 416276 CDS YP_001499727.1 157964903 5665427 complement(1158567..1158914) 1 NC_009900.1 hypothetical protein 1158914 5665427 RMA_1195 Rickettsia massiliae MTU5 hypothetical protein YP_001499727.1 1158567 R 416276 CDS YP_001499728.1 157964904 5665428 complement(1158921..1159262) 1 NC_009900.1 hypothetical protein 1159262 5665428 RMA_1196 Rickettsia massiliae MTU5 hypothetical protein YP_001499728.1 1158921 R 416276 CDS YP_001499729.1 157964905 5665894 complement(1159263..1164071) 1 NC_009900.1 NAD-specific glutamate dehydrogenase 1164071 5665894 RMA_1197 Rickettsia massiliae MTU5 NAD-specific glutamate dehydrogenase YP_001499729.1 1159263 R 416276 CDS YP_001499730.1 157964906 5665895 1164099..1165436 1 NC_009900.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1165436 trmE 5665895 trmE Rickettsia massiliae MTU5 tRNA modification GTPase TrmE YP_001499730.1 1164099 D 416276 CDS YP_001499731.1 157964907 5665896 1165846..1167147 1 NC_009900.1 hypothetical protein 1167147 5665896 RMA_1199 Rickettsia massiliae MTU5 hypothetical protein YP_001499731.1 1165846 D 416276 CDS YP_001499732.1 157964908 5665231 complement(1167965..1168441) 1 NC_009900.1 hypothetical protein 1168441 5665231 RMA_1200 Rickettsia massiliae MTU5 hypothetical protein YP_001499732.1 1167965 R 416276 CDS YP_001499733.1 157964909 5665959 1169631..1170662 1 NC_009900.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1170662 recA 5665959 recA Rickettsia massiliae MTU5 recombinase A YP_001499733.1 1169631 D 416276 CDS YP_001499734.1 157964910 5665960 1170631..1171380 1 NC_009900.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1171380 fabG 5665960 fabG Rickettsia massiliae MTU5 3-ketoacyl-ACP reductase YP_001499734.1 1170631 D 416276 CDS YP_001499735.1 157964911 5665961 1171545..1171805 1 NC_009900.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1171805 acpP 5665961 acpP Rickettsia massiliae MTU5 acyl carrier protein YP_001499735.1 1171545 D 416276 CDS YP_001499736.1 157964912 5664960 1171841..1173115 1 NC_009900.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1173115 fabF 5664960 fabF Rickettsia massiliae MTU5 3-oxoacyl-(acyl carrier protein) synthase II YP_001499736.1 1171841 D 416276 CDS YP_001499737.1 157964913 5664961 1173398..1175179 1 NC_009900.1 ABC transporter ATP-binding protein 1175179 uup 5664961 uup Rickettsia massiliae MTU5 ABC transporter ATP-binding protein YP_001499737.1 1173398 D 416276 CDS YP_001499738.1 157964914 5664962 1175260..1176330 1 NC_009900.1 hypothetical protein 1176330 5664962 RMA_1208 Rickettsia massiliae MTU5 hypothetical protein YP_001499738.1 1175260 D 416276 CDS YP_001499739.1 157964915 5665979 complement(1176594..1177748) 1 NC_009900.1 ATPase 1177748 5665979 RMA_1209 Rickettsia massiliae MTU5 ATPase YP_001499739.1 1176594 R 416276 CDS YP_001499740.1 157964916 5665980 complement(1177818..1178537) 1 NC_009900.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 1178537 gmk 5665980 gmk Rickettsia massiliae MTU5 guanylate kinase YP_001499740.1 1177818 R 416276 CDS YP_001499741.1 157964917 5665981 complement(1178644..1178955) 1 NC_009900.1 hypothetical protein 1178955 5665981 RMA_1211 Rickettsia massiliae MTU5 hypothetical protein YP_001499741.1 1178644 R 416276 CDS YP_001499742.1 157964918 5665945 complement(1179275..1180114) 1 NC_009900.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 1180114 mreC 5665945 mreC Rickettsia massiliae MTU5 rod shape-determining protein MreC YP_001499742.1 1179275 R 416276 CDS YP_001499743.1 157964919 5665946 complement(1180117..1181157) 1 NC_009900.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1181157 mreB 5665946 mreB Rickettsia massiliae MTU5 rod shape-determining protein MreB YP_001499743.1 1180117 R 416276 CDS YP_001499744.1 157964920 5665947 complement(1181368..1182480) 1 NC_009900.1 putative permease 1182480 5665947 RMA_1214 Rickettsia massiliae MTU5 putative permease YP_001499744.1 1181368 R 416276 CDS YP_001499745.1 157964921 5665058 complement(1182886..1183380) 1 NC_009900.1 peptidoglycan-associated lipoprotein 1183380 pal 5665058 pal Rickettsia massiliae MTU5 peptidoglycan-associated lipoprotein YP_001499745.1 1182886 R 416276 CDS YP_001499746.1 157964922 5665983 complement(1183846..1184799) 1 NC_009900.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1184799 fabH 5665983 fabH Rickettsia massiliae MTU5 3-oxoacyl-ACP synthase YP_001499746.1 1183846 R 416276 CDS YP_001499747.1 157964923 5665984 complement(1184807..1185040) 1 NC_009900.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1185040 rpmF 5665984 rpmF Rickettsia massiliae MTU5 50S ribosomal protein L32 YP_001499747.1 1184807 R 416276 CDS YP_001499748.1 157964924 5665988 1185094..1185576 1 NC_009900.1 tmRNA-binding protein 1185576 smpA 5665988 smpA Rickettsia massiliae MTU5 tmRNA-binding protein YP_001499748.1 1185094 D 416276 CDS YP_001499749.1 157964925 5665989 1185731..1186642 1 NC_009900.1 Signal recognition particle-docking protein FtsY 1186642 ftsY 5665989 ftsY Rickettsia massiliae MTU5 Signal recognition particle-docking protein FtsY YP_001499749.1 1185731 D 416276 CDS YP_001499750.1 157964926 5665990 1186805..1189432 1 NC_009900.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 1189432 polA 5665990 polA Rickettsia massiliae MTU5 DNA polymerase I YP_001499750.1 1186805 D 416276 CDS YP_001499751.1 157964927 5666116 complement(1193005..1196550) 1 NC_009900.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1196550 dnaE 5666116 dnaE Rickettsia massiliae MTU5 DNA polymerase III subunit alpha YP_001499751.1 1193005 R 416276 CDS YP_001499752.1 157964928 5666117 complement(1196715..1198022) 1 NC_009900.1 UDP-glucose 6-dehydrogenase 1198022 udg 5666117 udg Rickettsia massiliae MTU5 UDP-glucose 6-dehydrogenase YP_001499752.1 1196715 R 416276 CDS YP_001499753.1 157964929 5665047 1198205..1200781 1 NC_009900.1 hypothetical protein 1200781 5665047 RMA_1230 Rickettsia massiliae MTU5 hypothetical protein YP_001499753.1 1198205 D 416276 CDS YP_001499754.1 157964930 5665048 1200739..1202457 1 NC_009900.1 AmpG protein 1202457 ampG3 5665048 ampG3 Rickettsia massiliae MTU5 AmpG protein YP_001499754.1 1200739 D 416276 CDS YP_001499755.1 157964931 5665049 1202524..1203285 1 NC_009900.1 Sec-independent protein translocase protein TatC 1203285 tatC 5665049 tatC Rickettsia massiliae MTU5 Sec-independent protein translocase protein TatC YP_001499755.1 1202524 D 416276 CDS YP_001499756.1 157964932 5666173 1203263..1204540 1 NC_009900.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1204540 serS 5666173 serS Rickettsia massiliae MTU5 seryl-tRNA synthetase YP_001499756.1 1203263 D 416276 CDS YP_001499757.1 157964933 5666174 1204883..1207315 1 NC_009900.1 VirB4 1207315 virB4-2 5666174 virB4-2 Rickettsia massiliae MTU5 VirB4 YP_001499757.1 1204883 D 416276 CDS YP_001499758.1 157964934 5666175 1207448..1210957 1 NC_009900.1 hypothetical protein 1210957 5666175 RMA_1235 Rickettsia massiliae MTU5 hypothetical protein YP_001499758.1 1207448 D 416276 CDS YP_001499759.1 157964935 5666095 1210962..1211867 1 NC_009900.1 tellurium resistance protein TerC 1211867 terC 5666095 terC Rickettsia massiliae MTU5 tellurium resistance protein TerC YP_001499759.1 1210962 D 416276 CDS YP_001499760.1 157964936 5666096 1211905..1212624 1 NC_009900.1 hypothetical protein 1212624 5666096 RMA_1237 Rickettsia massiliae MTU5 hypothetical protein YP_001499760.1 1211905 D 416276 CDS YP_001499761.1 157964937 5666097 1212718..1214382 1 NC_009900.1 putative methyltransferase 1214382 5666097 RMA_1238 Rickettsia massiliae MTU5 putative methyltransferase YP_001499761.1 1212718 D 416276 CDS YP_001499762.1 157964938 5665280 1215169..1215795 1 NC_009900.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 1215795 nuoJ 5665280 nuoJ Rickettsia massiliae MTU5 NADH dehydrogenase subunit J YP_001499762.1 1215169 D 416276 CDS YP_001499763.1 157964939 5666179 1215764..1216102 1 NC_009900.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 1216102 nuoK 5666179 nuoK Rickettsia massiliae MTU5 NADH dehydrogenase subunit K YP_001499763.1 1215764 D 416276 CDS YP_001499764.1 157964940 5666180 1216099..1218075 1 NC_009900.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 1218075 nuoL1 5666180 nuoL1 Rickettsia massiliae MTU5 NADH dehydrogenase subunit L YP_001499764.1 1216099 D 416276 CDS YP_001499765.1 157964941 5666181 1218228..1219709 1 NC_009900.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 1219709 nuoM 5666181 nuoM Rickettsia massiliae MTU5 NADH dehydrogenase subunit M YP_001499765.1 1218228 D 416276 CDS YP_001499766.1 157964942 5666101 1220082..1220702 1 NC_009900.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 1220702 ccmA 5666101 ccmA Rickettsia massiliae MTU5 cytochrome c biogenesis protein CcmA YP_001499766.1 1220082 D 416276 CDS YP_001499767.1 157964943 5666102 complement(1221292..1221780) 1 NC_009900.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1221780 nuoI 5666102 nuoI Rickettsia massiliae MTU5 NADH dehydrogenase subunit I YP_001499767.1 1221292 R 416276 CDS YP_001499768.1 157964944 5666103 complement(1221960..1222982) 1 NC_009900.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 1222982 nuoH 5666103 nuoH Rickettsia massiliae MTU5 NADH dehydrogenase subunit H YP_001499768.1 1221960 R 416276 CDS YP_001499769.1 157964945 5666005 complement(1223102..1225177) 1 NC_009900.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 1225177 nuoG 5666005 nuoG Rickettsia massiliae MTU5 NADH dehydrogenase subunit G YP_001499769.1 1223102 R 416276 CDS YP_001499770.1 157964946 5666006 complement(1225123..1225479) 1 NC_009900.1 hypothetical protein 1225479 5666006 RMA_1249 Rickettsia massiliae MTU5 hypothetical protein YP_001499770.1 1225123 R 416276 CDS YP_001499771.1 157964947 5666007 complement(1225648..1228284) 1 NC_009900.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1228284 acnA 5666007 acnA Rickettsia massiliae MTU5 aconitate hydratase YP_001499771.1 1225648 R 416276 CDS YP_001499772.1 157964948 5664978 complement(1228487..1228819) 1 NC_009900.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 1228819 atpC 5664978 atpC Rickettsia massiliae MTU5 F0F1 ATP synthase subunit epsilon YP_001499772.1 1228487 R 416276 CDS YP_001499773.1 157964949 5664979 complement(1228859..1230358) 1 NC_009900.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 1230358 atpD 5664979 atpD Rickettsia massiliae MTU5 F0F1 ATP synthase subunit beta YP_001499773.1 1228859 R 416276 CDS YP_001499774.1 157964950 5664980 complement(1230456..1231433) 1 NC_009900.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 1231433 atpG 5664980 atpG Rickettsia massiliae MTU5 F0F1 ATP synthase subunit gamma YP_001499774.1 1230456 R 416276 CDS YP_001499775.1 157964951 5665008 complement(1231560..1233161) 1 NC_009900.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 1233161 atpA 5665008 atpA Rickettsia massiliae MTU5 F0F1 ATP synthase subunit alpha YP_001499775.1 1231560 R 416276 CDS YP_001499776.1 157964952 5665009 complement(1233256..1233819) 1 NC_009900.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 1233819 atpH 5665009 atpH Rickettsia massiliae MTU5 F0F1 ATP synthase subunit delta YP_001499776.1 1233256 R 416276 CDS YP_001499777.1 157964953 5665010 complement(1233972..1235351) 1 NC_009900.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1235351 lpdA1 5665010 lpdA1 Rickettsia massiliae MTU5 dihydrolipoamide dehydrogenase YP_001499777.1 1233972 R 416276 CDS YP_001499778.1 157964954 5665986 complement(1238217..1240589) 1 NC_009900.1 penicillin-binding protein 1A 1240589 mrcA 5665986 mrcA Rickettsia massiliae MTU5 penicillin-binding protein 1A YP_001499778.1 1238217 R 416276 CDS YP_001499779.1 157964955 5665987 complement(1240582..1241934) 1 NC_009900.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1241934 miaB 5665987 miaB Rickettsia massiliae MTU5 (dimethylallyl)adenosine tRNA methylthiotransferase YP_001499779.1 1240582 R 416276 CDS YP_001499780.1 157964956 5665031 complement(1243276..1244121) 1 NC_009900.1 hypothetical protein 1244121 5665031 RMA_1265 Rickettsia massiliae MTU5 hypothetical protein YP_001499780.1 1243276 R 416276 CDS YP_001499781.1 157964957 5665035 complement(1244348..1244860) 1 NC_009900.1 hypothetical protein 1244860 5665035 RMA_1266 Rickettsia massiliae MTU5 hypothetical protein YP_001499781.1 1244348 R 416276 CDS YP_001499782.1 157964958 5665036 complement(1244829..1246565) 1 NC_009900.1 glutathione-regulated potassium-efflux system protein KefB 1246565 kefB 5665036 kefB Rickettsia massiliae MTU5 glutathione-regulated potassium-efflux system protein KefB YP_001499782.1 1244829 R 416276 CDS YP_001499783.1 157964959 5665037 complement(1246553..1246906) 1 NC_009900.1 Iojap-related protein 1246906 5665037 RMA_1268 Rickettsia massiliae MTU5 Iojap-related protein YP_001499783.1 1246553 R 416276 CDS YP_001499784.1 157964960 5665038 1247016..1247273 1 NC_009900.1 BolA-like protein 1247273 bolA2 5665038 bolA2 Rickettsia massiliae MTU5 BolA-like protein YP_001499784.1 1247016 D 416276 CDS YP_001499785.1 157964961 5665039 complement(1247578..1247901) 1 NC_009900.1 transposase 1247901 5665039 RMA_1270 Rickettsia massiliae MTU5 transposase YP_001499785.1 1247578 R 416276 CDS YP_001499786.1 157964962 5665059 1255835..1256056 1 NC_009900.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1256056 infA 5665059 infA Rickettsia massiliae MTU5 translation initiation factor IF-1 YP_001499786.1 1255835 D 416276 CDS YP_001499787.1 157964963 5665196 1256062..1256715 1 NC_009900.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1256715 maf 5665196 maf Rickettsia massiliae MTU5 Maf-like protein YP_001499787.1 1256062 D 416276 CDS YP_001499788.1 157964964 5665197 complement(1256848..1257285) 1 NC_009900.1 DnaK suppressor-like protein 1257285 dksA 5665197 dksA Rickettsia massiliae MTU5 DnaK suppressor-like protein YP_001499788.1 1256848 R 416276 CDS YP_001499789.1 157964965 5665198 complement(1257386..1258303) 1 NC_009900.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 1258303 xerC 5665198 xerC Rickettsia massiliae MTU5 site-specific tyrosine recombinase XerC YP_001499789.1 1257386 R 416276 CDS YP_001499790.1 157964966 5665207 complement(1259131..1259733) 1 NC_009900.1 phospholipase D superfamily protein PLD 1259733 pldA 5665207 pldA Rickettsia massiliae MTU5 phospholipase D superfamily protein PLD YP_001499790.1 1259131 R 416276 CDS YP_001499791.1 157964967 5665403 complement(1261796..1263274) 1 NC_009900.1 UbiD family decarboxylase 1263274 ubiD 5665403 ubiD Rickettsia massiliae MTU5 UbiD family decarboxylase YP_001499791.1 1261796 R 416276 CDS YP_001499792.1 157964968 5665404 complement(1263431..1265008) 1 NC_009900.1 parvulin-like peptidyl-prolyl isomerase 1265008 surA 5665404 surA Rickettsia massiliae MTU5 parvulin-like peptidyl-prolyl isomerase YP_001499792.1 1263431 R 416276 CDS YP_001499793.1 157964969 5665302 complement(1265198..1271113) 1 NC_009900.1 outer membrane protein OmpA 1271113 ompA 5665302 ompA Rickettsia massiliae MTU5 outer membrane protein OmpA YP_001499793.1 1265198 R 416276 CDS YP_001499794.1 157964970 5665303 complement(1271335..1272144) 1 NC_009900.1 ankyrin repeat-containing protein 1272144 5665303 RMA_1297 Rickettsia massiliae MTU5 ankyrin repeat-containing protein YP_001499794.1 1271335 R 416276 CDS YP_001499795.1 157964971 5665304 complement(1272706..1274952) 1 NC_009900.1 cell division protein FtsK 1274952 ftsK 5665304 ftsK Rickettsia massiliae MTU5 cell division protein FtsK YP_001499795.1 1272706 R 416276 CDS YP_001499796.1 157964972 5665414 1276160..1276939 1 NC_009900.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 1276939 map 5665414 map Rickettsia massiliae MTU5 methionine aminopeptidase YP_001499796.1 1276160 D 416276 CDS YP_001499797.1 157964973 5665457 1277911..1278894 1 NC_009900.1 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase 1278894 mraY2 5665457 mraY2 Rickettsia massiliae MTU5 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase YP_001499797.1 1277911 D 416276 CDS YP_001499798.1 157964974 5665458 1278792..1279214 1 NC_009900.1 hypothetical protein 1279214 5665458 RMA_1306 Rickettsia massiliae MTU5 hypothetical protein YP_001499798.1 1278792 D 416276 CDS YP_001499799.1 157964975 5665459 complement(1279615..1280343) 1 NC_009900.1 hypothetical protein 1280343 5665459 RMA_1307 Rickettsia massiliae MTU5 hypothetical protein YP_001499799.1 1279615 R 416276 CDS YP_001499800.1 157964976 5665482 complement(1280590..1281273) 1 NC_009900.1 putative outer surface protein 1281273 5665482 RMA_1308 Rickettsia massiliae MTU5 putative outer surface protein YP_001499800.1 1280590 R 416276 CDS YP_001499801.1 157964977 5665483 complement(1281533..1281883) 1 NC_009900.1 ferredoxin 1281883 fdxA 5665483 fdxA Rickettsia massiliae MTU5 ferredoxin YP_001499801.1 1281533 R 416276 CDS YP_001499802.1 157964978 5665484 complement(1281888..1282580) 1 NC_009900.1 Heme exporter protein C 1282580 ccmC 5665484 ccmC Rickettsia massiliae MTU5 Heme exporter protein C YP_001499802.1 1281888 R 416276 CDS YP_001499803.1 157964979 5665493 complement(1282674..1283246) 1 NC_009900.1 cytosine deaminase 1283246 5665493 RMA_1311 Rickettsia massiliae MTU5 cytosine deaminase YP_001499803.1 1282674 R 416276 CDS YP_001499804.1 157964980 5665494 complement(1283221..1284141) 1 NC_009900.1 cation diffusion facilitator family transporter 1284141 5665494 RMA_1312 Rickettsia massiliae MTU5 cation diffusion facilitator family transporter YP_001499804.1 1283221 R 416276 CDS YP_001499805.1 157964981 5665495 1284328..1284807 1 NC_009900.1 17 kDa surface antigen 1284807 omp 5665495 omp Rickettsia massiliae MTU5 17 kDa surface antigen YP_001499805.1 1284328 D 416276 CDS YP_001499806.1 157964982 5665525 1284844..1285236 1 NC_009900.1 phosphatidylethanolamine-binding protein PEBP 1285236 5665525 RMA_1314 Rickettsia massiliae MTU5 phosphatidylethanolamine-binding protein PEBP YP_001499806.1 1284844 D 416276 CDS YP_001499807.1 157964983 5665526 1285416..1286117 1 NC_009900.1 Zinc ABC transporter ATP-binding protein 1286117 znuC 5665526 znuC Rickettsia massiliae MTU5 Zinc ABC transporter ATP-binding protein YP_001499807.1 1285416 D 416276 CDS YP_001499808.1 157964984 5665587 complement(1289959..1292850) 1 NC_009900.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 1292850 uvrA 5665587 uvrA Rickettsia massiliae MTU5 excinuclease ABC subunit A YP_001499808.1 1289959 R 416276 CDS YP_001499809.1 157964985 5665574 1292930..1293388 1 NC_009900.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 1293388 ssb 5665574 ssb Rickettsia massiliae MTU5 single-stranded DNA-binding protein YP_001499809.1 1292930 D 416276 CDS YP_001499810.1 157964986 5665575 1293388..1294224 1 NC_009900.1 DAP2 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein 1294224 5665575 RMA_1321 Rickettsia massiliae MTU5 DAP2 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein YP_001499810.1 1293388 D 416276 CDS YP_001499811.1 157964987 5665615 complement(1294893..1295468) 1 NC_009900.1 hypothetical protein 1295468 5665615 RMA_1323 Rickettsia massiliae MTU5 hypothetical protein YP_001499811.1 1294893 R 416276 CDS YP_001499812.1 157964988 5665411 1295908..1296231 1 NC_009900.1 hypothetical protein 1296231 5665411 RMA_1324 Rickettsia massiliae MTU5 hypothetical protein YP_001499812.1 1295908 D 416276 CDS YP_001499813.1 157964989 5665617 1296369..1298240 1 NC_009900.1 molecular chaperone; heat shock protein 90 1298240 htpG 5665617 htpG Rickettsia massiliae MTU5 heat shock protein 90 YP_001499813.1 1296369 D 416276 CDS YP_001499814.1 157964990 5665601 1298371..1299672 1 NC_009900.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase 1299672 hemA 5665601 hemA Rickettsia massiliae MTU5 5-aminolevulinate synthase YP_001499814.1 1298371 D 416276 CDS YP_001499815.1 157964991 5665603 1301327..1302673 1 NC_009900.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1302673 tig 5665603 tig Rickettsia massiliae MTU5 trigger factor YP_001499815.1 1301327 D 416276 CDS YP_001499816.1 157964992 5665640 complement(1302816..1303916) 1 NC_009900.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1303916 obgE 5665640 obgE Rickettsia massiliae MTU5 GTPase ObgE YP_001499816.1 1302816 R 416276 CDS YP_001499817.1 157964993 5665641 complement(1303919..1305247) 1 NC_009900.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 1305247 gltA 5665641 gltA Rickettsia massiliae MTU5 type II citrate synthase YP_001499817.1 1303919 R 416276 CDS YP_001499818.1 157964994 5665642 complement(1305346..1305576) 1 NC_009900.1 transcriptional regulator 1305576 5665642 RMA_1331 Rickettsia massiliae MTU5 transcriptional regulator YP_001499818.1 1305346 R 416276 CDS YP_001499819.1 157964995 5665706 complement(1305882..1306766) 1 NC_009900.1 uracil-DNA glycosylase 1306766 5665706 RMA_1332 Rickettsia massiliae MTU5 uracil-DNA glycosylase YP_001499819.1 1305882 R 416276 CDS YP_001499820.1 157964996 5665707 1306685..1307626 1 NC_009900.1 ribosomal large subunit pseudouridine synthases RluD subfamily protein 1307626 5665707 RMA_1333 Rickettsia massiliae MTU5 ribosomal large subunit pseudouridine synthases RluD subfamily protein YP_001499820.1 1306685 D 416276 CDS YP_001499821.1 157964997 5665708 1309435..1310970 1 NC_009900.1 fusion of hemK/trmB; N-terminal HemK domain transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; C-terminal; bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase 1310970 hemK 5665708 hemK Rickettsia massiliae MTU5 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase YP_001499821.1 1309435 D 416276 CDS YP_001499822.1 157964998 5665698 complement(1310936..1311874) 1 NC_009900.1 Sua5/YciO/YrdC/YwlC family translation factor protein 1311874 5665698 RMA_1335 Rickettsia massiliae MTU5 Sua5/YciO/YrdC/YwlC family translation factor protein YP_001499822.1 1310936 R 416276 CDS YP_001499823.1 157964999 5665699 complement(1311871..1313898) 1 NC_009900.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 1313898 glyS 5665699 glyS Rickettsia massiliae MTU5 glycyl-tRNA synthetase subunit beta YP_001499823.1 1311871 R 416276 CDS YP_001499824.1 157965000 5665700 complement(1313865..1314731) 1 NC_009900.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 1314731 glyQ 5665700 glyQ Rickettsia massiliae MTU5 glycyl-tRNA synthetase subunit alpha YP_001499824.1 1313865 R 416276 CDS YP_001499825.1 157965001 5665723 complement(1314763..1315173) 1 NC_009900.1 toxin of toxin-antitoxin 1315173 vapC3 5665723 vapC3 Rickettsia massiliae MTU5 toxin of toxin-antitoxin YP_001499825.1 1314763 R 416276 CDS YP_001499826.1 157965002 5665724 complement(1315167..1315403) 1 NC_009900.1 putative antitoxin of toxin-antitoxin 1315403 5665724 RMA_1339 Rickettsia massiliae MTU5 putative antitoxin of toxin-antitoxin YP_001499826.1 1315167 R 416276 CDS YP_001499827.1 157965003 5665725 complement(1315493..1316128) 1 NC_009900.1 hypothetical protein 1316128 5665725 RMA_1340 Rickettsia massiliae MTU5 hypothetical protein YP_001499827.1 1315493 R 416276 CDS YP_001499828.1 157965004 5665753 1319199..1319381 1 NC_009900.1 hypothetical protein 1319381 5665753 RMA_1344 Rickettsia massiliae MTU5 hypothetical protein YP_001499828.1 1319199 D 416276 CDS YP_001499829.1 157965005 5665754 1319366..1321213 1 NC_009900.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1321213 mutL 5665754 mutL Rickettsia massiliae MTU5 DNA mismatch repair protein YP_001499829.1 1319366 D 416276 CDS YP_001499830.1 157965006 5665755 1321434..1321604 1 NC_009900.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1321604 rpmG 5665755 rpmG Rickettsia massiliae MTU5 50S ribosomal protein L33 YP_001499830.1 1321434 D 416276 CDS YP_001499831.1 157965007 5665842 1321618..1321953 1 NC_009900.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1321953 rpsP 5665842 rpsP Rickettsia massiliae MTU5 30S ribosomal protein S16 YP_001499831.1 1321618 D 416276 CDS YP_001499832.1 157965008 5665534 1322393..1323142 1 NC_009900.1 negative regulator of beta-lactamase expression 1323142 ampD2 5665534 ampD2 Rickettsia massiliae MTU5 negative regulator of beta-lactamase expression YP_001499832.1 1322393 D 416276 CDS YP_001499833.1 157965009 5665844 1323133..1323768 1 NC_009900.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 1323768 lipB 5665844 lipB Rickettsia massiliae MTU5 lipoate-protein ligase B YP_001499833.1 1323133 D 416276 CDS YP_001499834.1 157965010 5665909 1323765..1324280 1 NC_009900.1 hypothetical protein 1324280 5665909 RMA_1350 Rickettsia massiliae MTU5 hypothetical protein YP_001499834.1 1323765 D 416276 CDS YP_001499835.1 157965011 5665910 complement(1324290..1325510) 1 NC_009900.1 Na+/H+ antiporter NhaA 1325510 nhaA 5665910 nhaA Rickettsia massiliae MTU5 Na+/H+ antiporter NhaA YP_001499835.1 1324290 R 416276 CDS YP_001499836.1 157965012 5666016 1328223..1329371 1 NC_009900.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 1329371 dapE 5666016 dapE Rickettsia massiliae MTU5 succinyl-diaminopimelate desuccinylase YP_001499836.1 1328223 D 416276 CDS YP_001499837.1 157965013 5665360 1329524..1329994 1 NC_009900.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 1329994 holC 5665360 holC Rickettsia massiliae MTU5 DNA polymerase III subunit chi YP_001499837.1 1329524 D 416276 CDS YP_001499838.1 157965014 5666003 complement(1330000..1331112) 1 NC_009900.1 putative permease 1331112 5666003 RMA_1360 Rickettsia massiliae MTU5 putative permease YP_001499838.1 1330000 R 416276 CDS YP_001499839.1 157965015 5666004 complement(1331221..1331376) 1 NC_009900.1 hypothetical protein 1331376 5666004 RMA_1361 Rickettsia massiliae MTU5 hypothetical protein YP_001499839.1 1331221 R 416276 CDS YP_001499840.1 157965016 5666131 complement(1331476..1331745) 1 NC_009900.1 DNA-damage-inducible protein J 1331745 dinJ 5666131 dinJ Rickettsia massiliae MTU5 DNA-damage-inducible protein J YP_001499840.1 1331476 R 416276 CDS YP_001499841.1 157965017 5666132 complement(1331832..1332491) 1 NC_009900.1 hypothetical protein 1332491 5666132 RMA_1363 Rickettsia massiliae MTU5 hypothetical protein YP_001499841.1 1331832 R 416276 CDS YP_001499842.1 157965018 5666133 1332488..1333258 1 NC_009900.1 beta-lactamase superfamily hydrolase 1333258 phnP 5666133 phnP Rickettsia massiliae MTU5 beta-lactamase superfamily hydrolase YP_001499842.1 1332488 D 416276 CDS YP_001499843.1 157965019 5666089 1333262..1333984 1 NC_009900.1 glutamine ABC transporter ATP-binding protein 1333984 glnQ 5666089 glnQ Rickettsia massiliae MTU5 glutamine ABC transporter ATP-binding protein YP_001499843.1 1333262 D 416276 CDS YP_001499844.1 157965020 5666090 1334236..1334403 1 NC_009900.1 antitoxin of toxin-antitoxin 1334403 5666090 RMA_1366 Rickettsia massiliae MTU5 antitoxin of toxin-antitoxin YP_001499844.1 1334236 D 416276 CDS YP_001499845.1 157965021 5666150 1335505..1336245 1 NC_009900.1 putative aspartyl protease 1336245 5666150 RMA_1368 Rickettsia massiliae MTU5 putative aspartyl protease YP_001499845.1 1335505 D 416276 CDS YP_001499846.1 157965022 5666151 complement(1336772..1337098) 1 NC_009900.1 hypothetical protein 1337098 5666151 RMA_1369 Rickettsia massiliae MTU5 hypothetical protein YP_001499846.1 1336772 R 416276 CDS YP_001499847.1 157965023 5666152 complement(1337115..1338665) 1 NC_009900.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; rhe tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 1338665 dnaX 5666152 dnaX Rickettsia massiliae MTU5 DNA polymerase III subunits gamma and tau YP_001499847.1 1337115 R 416276 CDS YP_001499848.1 157965024 5665361 complement(1338891..1339571) 1 NC_009900.1 Outer membrane lipoprotein-sorting protein LolA 1339571 lolA 5665361 lolA Rickettsia massiliae MTU5 Outer membrane lipoprotein-sorting protein LolA YP_001499848.1 1338891 R 416276 CDS YP_001499849.1 157965025 5666160 1339605..1340729 1 NC_009900.1 NAD(P) transhydrogenase subunit alpha 1340729 pntA1 5666160 pntA1 Rickettsia massiliae MTU5 NAD(P) transhydrogenase subunit alpha YP_001499849.1 1339605 D 416276 CDS YP_001499850.1 157965026 5666161 1340717..1341124 1 NC_009900.1 NAD(P) transhydrogenase subunit alpha 1341124 pntA2 5666161 pntA2 Rickettsia massiliae MTU5 NAD(P) transhydrogenase subunit alpha YP_001499850.1 1340717 D 416276 CDS YP_001499851.1 157965027 5666176 complement(1341283..1341879) 1 NC_009900.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 1341879 greA 5666176 greA Rickettsia massiliae MTU5 transcription elongation factor GreA YP_001499851.1 1341283 R 416276 CDS YP_001499852.1 157965028 5666177 1341913..1342539 1 NC_009900.1 dolichol kinase 1342539 sec59 5666177 sec59 Rickettsia massiliae MTU5 dolichol kinase YP_001499852.1 1341913 D 416276 CDS YP_001499853.1 157965029 5666178 1342478..1344331 1 NC_009900.1 synthesizes RNA primers at the replication forks; DNA primase 1344331 dnaG 5666178 dnaG Rickettsia massiliae MTU5 DNA primase YP_001499853.1 1342478 D 416276 CDS YP_001499854.1 157965030 5665316 1344376..1346277 1 NC_009900.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 1346277 rpoD 5665316 rpoD Rickettsia massiliae MTU5 RNA polymerase sigma factor RpoD YP_001499854.1 1344376 D 416276 CDS YP_001499855.1 157965031 5665317 1346373..1347113 1 NC_009900.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1347113 truA 5665317 truA Rickettsia massiliae MTU5 tRNA pseudouridine synthase A YP_001499855.1 1346373 D 416276 CDS YP_001499856.1 157965032 5665318 complement(1347325..1349976) 1 NC_009900.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1349976 alaS 5665318 alaS Rickettsia massiliae MTU5 alanyl-tRNA synthetase YP_001499856.1 1347325 R 416276 CDS YP_001499857.1 157965033 5665451 1350155..1351729 1 NC_009900.1 hypothetical protein 1351729 5665451 RMA_1380 Rickettsia massiliae MTU5 hypothetical protein YP_001499857.1 1350155 D 416276 CDS YP_001499858.1 157965034 5665452 1351801..1352439 1 NC_009900.1 hypothetical protein 1352439 5665452 RMA_1381 Rickettsia massiliae MTU5 hypothetical protein YP_001499858.1 1351801 D 416276 CDS YP_001499859.1 157965035 5665453 1352440..1353399 1 NC_009900.1 hypothetical protein 1353399 5665453 RMA_1382 Rickettsia massiliae MTU5 hypothetical protein YP_001499859.1 1352440 D 416276 CDS YP_001499860.1 157965036 5665943 1354294..1355565 1 NC_009900.1 proline/betaine transporter 1355565 proP7 5665943 proP7 Rickettsia massiliae MTU5 proline/betaine transporter YP_001499860.1 1354294 D 416276 CDS YP_001499861.1 157965037 5665944 1355543..1356388 1 NC_009900.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 1356388 hemF 5665944 hemF Rickettsia massiliae MTU5 coproporphyrinogen III oxidase YP_001499861.1 1355543 D 416276 CDS YP_001499862.1 157965038 5665379 complement(1358018..1358467) 1 NC_009900.1 hypothetical protein 1358467 5665379 RMA_1387 Rickettsia massiliae MTU5 hypothetical protein YP_001499862.1 1358018 R 416276 CDS YP_001499863.1 157965039 5665380 complement(1358467..1359507) 1 NC_009900.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1359507 hemH 5665380 hemH Rickettsia massiliae MTU5 ferrochelatase YP_001499863.1 1358467 R 416276 CDS YP_001499864.1 157965040 5665657 complement(1359464..1360549) 1 NC_009900.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 1360549 hemE 5665657 hemE Rickettsia massiliae MTU5 uroporphyrinogen decarboxylase YP_001499864.1 1359464 R 416276 CDS