-- dump date 20140620_032938 -- class Genbank::CDS -- table cds_note -- id note YP_002296275.1 Contains a type I secretion target ggxgxdxxx repeat (2 copies) domain; Contains a Cadherin domain; identified by match to protein family HMM PF02789 YP_002296276.1 identified by match to protein family HMM PF00028 match to protein family HMM PF00353 YP_002296277.1 identified by match to protein family HMM PF07848 YP_002296278.1 identified by match to protein family HMM PF00441 match to protein family HMM PF02770 match to protein family HMM PF08028 YP_002296279.1 identified by match to protein family HMM PF00126 match to protein family HMM PF03466 YP_002296280.1 identified by Glimmer2 putative YP_002296281.1 Contains Sigma-70 region 2 and Sigma-70 region 4, see PF04542 YP_002296282.1 identified by match to protein family HMM PF04542 match to protein family HMM PF04545 match to protein family HMM TIGR02937 YP_002296283.1 identified by match to protein family HMM PF04946 YP_002296284.1 identified by Glimmer2 putative YP_002296286.1 identified by Glimmer2 putative YP_002296287.1 identified by Glimmer2 putative YP_002296289.1 identified by match to protein family HMM PF00005 match to protein family HMM PF00664 YP_002296290.1 identified by match to protein family HMM PF00583 YP_002296291.1 identified by match to protein family HMM TIGR01409 YP_002296292.1 identified by match to protein family HMM PF00593 match to protein family HMM PF07715 YP_002296293.1 TIGR00133 With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF07995 YP_002296294.1 identified by Glimmer2 putative YP_002296297.1 identified by Glimmer2 putative YP_002296300.1 identified by match to protein family HMM PF00239 match to protein family HMM PF07508 YP_002296301.1 identified by Glimmer2 putative YP_002296303.1 identified by match to protein family HMM PF01381 YP_002296304.1 identified by match to protein family HMM PF06114 YP_002296305.1 identified by Glimmer2 putative YP_002296313.1 identified by Glimmer2 putative YP_002296317.1 identified by Glimmer2 putative YP_002296318.1 identified by Glimmer2 putative YP_002296323.1 identified by match to protein family HMM PF01555 match to protein family HMM PF02195 YP_002296324.1 identified by match to protein family HMM PF01555 match to protein family HMM PF02195 YP_002296327.1 identified by Glimmer2 putative YP_002296328.1 identified by match to protein family HMM PF05876 YP_002296330.1 identified by match to protein family HMM PF05136 match to protein family HMM TIGR01539 YP_002296331.1 identified by match to protein family HMM PF04586 YP_002296332.1 identified by match to protein family HMM PF01510 YP_002296333.1 identified by Glimmer2 putative YP_002296335.1 identified by Glimmer2 putative YP_002296336.1 identified by match to protein family HMM PF07929 YP_002296337.1 identified by Glimmer2 putative YP_002296342.1 identified by Glimmer2 putative YP_002296343.1 identified by match to protein family HMM PF05016 YP_002296344.1 identified by match to protein family HMM PF03693 match to protein family HMM TIGR02606 YP_002296345.1 identified by Glimmer2 putative YP_002296348.1 identified by Glimmer2 putative YP_002296352.1 identified by Glimmer2 putative YP_002296353.1 identified by Glimmer2 putative YP_002296354.1 identified by Glimmer2 putative YP_002296356.1 identified by match to protein family HMM PF07505 YP_002296358.1 identified by match to protein family HMM PF04851 YP_002296360.1 identified by match to protein family HMM PF01555 YP_002296362.1 identified by match to protein family HMM PF00176 match to protein family HMM PF00271 YP_002296363.1 identified by match to protein family HMM PF01850 YP_002296366.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002296367.1 Strong similarity With PabA from E; coli, which Has a different enzymatic function; identified by match to protein family HMM PF01967 match to protein family HMM TIGR00581 YP_002296368.1 Alternate namesAlso matched to TIGR02044: Cu(I)-responsive transcriptional regulator and PF00376: transcriptional regulator, MerR family; identified by match to protein family HMM PF00218 YP_002296369.1 identified by match to protein family HMM PF00591 match to protein family HMM PF02885 match to protein family HMM TIGR01245 YP_002296370.1 identified by match to protein family HMM PF00117 match to protein family HMM TIGR00566 YP_002296371.1 identified by match to protein family HMM PF00376 match to protein family HMM TIGR02044 YP_002296372.1 identified by match to protein family HMM PF04748 YP_002296373.1 identified by match to protein family HMM PF00403 YP_002296374.1 identified by match to protein family HMM PF00425 match to protein family HMM PF04715 match to protein family HMM TIGR00564 YP_002296375.1 identified by match to protein family HMM PF00639 YP_002296376.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_002296377.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_002296378.1 identified by match to protein family HMM PF03840 match to protein family HMM TIGR00810 YP_002296379.1 identified by match to protein family HMM PF00117 match to protein family HMM PF06418 match to protein family HMM TIGR00337 YP_002296380.1 identified by match to protein family HMM PF00793 match to protein family HMM TIGR01362 YP_002296381.1 identified by match to protein family HMM PF01553 YP_002296382.1 catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase YP_002296383.1 E2 component of pyruvate dehydrogenase complex YP_002296384.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes identified by match to protein family HMM PF04977 YP_002296385.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_002296386.1 identified by match to protein family HMM PF00364 match to protein family HMM PF02779 match to protein family HMM PF02780 YP_002296387.1 identified by match to protein family HMM PF00198 match to protein family HMM PF00364 match to protein family HMM PF02817 match to protein family HMM TIGR01349 YP_002296388.1 [includes] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synt Hase [pathway] Isoprenoid biosynthesis identified by match to protein family HMM PF00070 match to protein family HMM PF01134 match to protein family HMM PF02852 match to protein family HMM PF07992 match to protein family HMM TIGR01350 YP_002296389.1 PF01207 With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF04055 match to protein family HMM TIGR00510 YP_002296390.1 identified by match to protein family HMM PF03364 YP_002296391.1 contains Sigma-54 interaction domain identified by match to protein family HMM PF02464 match to protein family HMM TIGR00199 YP_002296392.1 identified by match to protein family HMM PF01128 match to protein family HMM PF02542 match to protein family HMM TIGR00151 match to protein family HMM TIGR00453 YP_002296393.1 contains Sigma-54 interaction domain identified by match to protein family HMM PF01207 match to protein family HMM TIGR00737 YP_002296394.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_002296395.1 identified by match to protein family HMM PF00072 match to protein family HMM PF00158 match to protein family HMM PF02954 match to protein family HMM TIGR01818 YP_002296396.1 identified by match to protein family HMM PF00512 match to protein family HMM PF00672 match to protein family HMM PF00989 match to protein family HMM PF02518 YP_002296397.1 Also called RNA chaperone Hfq; identified by match to protein family HMM PF00072 match to protein family HMM PF00158 match to protein family HMM PF02954 YP_002296398.1 identified by match to protein family HMM PF02080 match to protein family HMM PF02254 YP_002296399.1 identified by match to protein family HMM PF01063 YP_002296400.1 [Synonyms] IMPase Inositol-1-phosphatase identified by match to protein family HMM PF00702 match to protein family HMM TIGR01549 YP_002296401.1 identified by match to protein family HMM PF01423 match to protein family HMM TIGR02383 YP_002296402.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era YP_002296403.1 Alternate namesMatched to PF00376: transcriptional regulator, MerR family; identified by match to protein family HMM PF00551 match to protein family HMM PF01842 match to protein family HMM TIGR00655 YP_002296404.1 identified by match to protein family HMM PF00459 YP_002296405.1 identified by match to protein family HMM PF00106 match to protein family HMM PF01370 YP_002296406.1 [synonyms] 8-hydroxy-5-deazaflavin-reducing hydrogenase subunit beta identified by match to protein family HMM PF03819 match to protein family HMM TIGR00444 YP_002296407.1 identified by match to protein family HMM PF00376 YP_002296409.1 identified by match to protein family HMM PF00441 match to protein family HMM PF02770 match to protein family HMM PF02771 match to protein family HMM PF08028 YP_002296410.1 identified by match to protein family HMM PF04422 match to protein family HMM PF04432 YP_002296411.1 PF00501 With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF01047 YP_002296412.1 identified by match to protein family HMM PF01906 YP_002296413.1 identified by match to protein family HMM PF00501 YP_002296414.1 identified by Glimmer2 putative YP_002296415.1 identified by match to protein family HMM PF00501 YP_002296416.1 PF01728TIGR00438; ribosomal RNA large subunit methyltransferase J; With a good score above the trusted cutoff and characterized homologs YP_002296418.1 Has few homologs With this identity non of which is characterized; identified by match to protein family HMM PF00535 YP_002296419.1 identified by match to protein family HMM PF02541 YP_002296420.1 identified by match to protein family HMM PF01728 YP_002296421.1 identified by Glimmer2 putative YP_002296422.1 identified by Glimmer2 putative YP_002296423.1 PF01425 YP_002296424.1 identified by Glimmer2 putative YP_002296425.1 identified by Glimmer2 putative YP_002296426.1 identified by Glimmer2 putative YP_002296427.1 Member of the two-component regulatory system zraS YP_002296428.1 identified by Glimmer2 putative YP_002296429.1 identified by Glimmer2 putative YP_002296431.1 identified by match to protein family HMM PF00072 match to protein family HMM PF00158 match to protein family HMM PF02954 YP_002296432.1 identified by Glimmer2 putative YP_002296434.1 Also called mannose-6-phosphate isomerase.Gene symbol synonyms rfbM rfbM1 identified by match to protein family HMM PF01656 YP_002296435.1 Gene symbol synonym Contains PF01047: transcriptional regulator, MarR family YP_002296437.1 identified by Glimmer2 putative YP_002296438.1 identified by Glimmer2 putative YP_002296439.1 identified by Glimmer2 putative YP_002296440.1 identified by Glimmer2 putative YP_002296441.1 One of three proteins involved in switching the direction of the flagellar rotation YP_002296442.1 Part of the flhB operon YP_002296443.1 Gene name synonym flaR.Part of the fliL operon; Type III secrestion system; Export component integral to plasma membrane YP_002296444.1 Part of the C ring in the flagellar basal body of many bacteria along With fliG and fliM.Orgainization of fliN in the C ring, see J Bacteriol; 2006 Apr188(7):2502-11; Rotor YP_002296445.1 identified by match to protein family HMM PF01706 match to protein family HMM TIGR00207 YP_002296446.1 Gene symbol synonym flaO.MS-ring protein mounting flange for rotor YP_002296447.1 Gene symbol synonym flbO; identified by match to protein family HMM PF00813 match to protein family HMM TIGR01103 YP_002296448.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum YP_002296450.1 identified by match to protein family HMM PF01514 match to protein family HMM TIGR00206 YP_002296451.1 Export component integral to plasma membrane substrate specificity switch Has a large cytoplasmic domain thought to be the target for the docking of soluble export components FliI, FliH, and FliJ; identified by match to protein family HMM PF03748 YP_002296452.1 Part of the fliQR operon.Type III secretion system; Export component integral to plasma membrane; identified by match to protein family HMM PF01052 match to protein family HMM PF02154 match to protein family HMM TIGR01397 YP_002296453.1 gene symbol synonym flbF.Part of the flhB operon; Export component integral to plasma membrane Has a large cytoplasmic domain thought to be the target for the docking of soluble export components FliI, FliH, and FliJ YP_002296454.1 identified by Glimmer2 putative YP_002296456.1 Part of the FliQR operon.Type III secretion system; Export component integral to plasma membrane; identified by match to protein family HMM PF01311 YP_002296457.1 Part of the proximal rod With flgB and flgC.MS-ring rod junction protein export gate periplasmic space; identified by match to protein family HMM PF00771 match to protein family HMM TIGR01398 YP_002296458.1 Part of the proximal rod With fliE and flgB YP_002296459.1 Part of the proximal rod with fliE and flgC transmission shaft periplasmic space YP_002296460.1 involved in type III protein export during flagellum assembly YP_002296461.1 identified by match to protein family HMM PF02049 YP_002296462.1 identified by Glimmer2 putative YP_002296464.1 identified by Glimmer2 putative YP_002296465.1 identified by match to protein family HMM PF01384 YP_002296467.1 identified by match to protein family HMM PF06748 YP_002296468.1 identified by Glimmer2 putative YP_002296469.1 identified by match to protein family HMM PF07378 YP_002296470.1 Gene symbol synonym flaP.P-ring protein part of bushing internal disulfide bridge periplasmic space; identified by match to protein family HMM PF07309 YP_002296471.1 Three putative domains within the geneREC, trans_reg_c, & OmpR; identified by match to protein family HMM PF00669 match to protein family HMM PF00700 YP_002296472.1 identified by Glimmer2 putative YP_002296473.1 Part of the hook-filament junction; HAP1 first hook-filament junction protein cell exterior YP_002296474.1 Gene symbol sysnonym flaK.Located on cell exterior; identified by match to protein family HMM PF02119 YP_002296475.1 Stator protein converts proton energy into torque integral to plasma membrane; identified by match to protein family HMM PF00072 match to protein family HMM PF00486 YP_002296476.1 Also called lateral flagellar motor protein MotA.Stator protein exerts torque against rotor YP_002296477.1 identified by Glimmer2 putative YP_002296478.1 identified by Glimmer2 putative YP_002296479.1 Gene symbol synonym flaC.Rod protein transmission shaft periplasmic space; identified by match to protein family HMM PF00691 YP_002296480.1 Gene symbol synonym flaB.Distal rod protein transmission shaft periplasmic space; identified by match to protein family HMM PF01618 YP_002296481.1 Chaperone for P-ring protein periplasmic space; identified by match to protein family HMM PF07721 YP_002296482.1 Gene symbol synonym flbN.L-ring protein part of bushing lipoprotein outer membrane; identified by match to protein family HMM PF00460 YP_002296483.1 identified by Glimmer2 putative YP_002296484.1 identified by match to protein family HMM PF03240 YP_002296485.1 gene symbol synonyms fla FIV, flaV.Part of the filament cap in flagella; Also called hook-capping protein; Located on cell exterior; identified by match to protein family HMM PF02107 YP_002296487.1 identified by Glimmer2 putative YP_002296488.1 identified by match to protein family HMM PF03963 YP_002296489.1 identified by match to protein family HMM PF02120 YP_002296490.1 identified by Glimmer2 putative YP_002296491.1 identified by Glimmer2 putative YP_002296492.1 identified by match to protein family HMM PF00596 YP_002296495.1 identified by match to protein family HMM PF00128 match to protein family HMM PF02922 match to protein family HMM TIGR02100 YP_002296496.1 identified by match to protein family HMM PF00535 YP_002296497.1 identified by match to protein family HMM PF01553 YP_002296498.1 [contains] FAD binding domain identified by match to protein family HMM PF01073 match to protein family HMM PF01370 match to protein family HMM PF04321 match to protein family HMM PF07993 YP_002296500.1 Contains PF03466 identified by match to protein family HMM PF00205 match to protein family HMM PF02775 match to protein family HMM PF02776 YP_002296501.1 type III RuBisCO; involved in carbon fixation YP_002296502.1 identified by match to protein family HMM PF01636 YP_002296503.1 identified by match to protein family HMM PF00126 match to protein family HMM PF03466 YP_002296504.1 [contains] von Willebrand factor type A domain identified by match to protein family HMM PF00016 match to protein family HMM PF02788 YP_002296505.1 identified by match to protein family HMM PF00101 YP_002296506.1 identified by Glimmer2 putative YP_002296507.1 identified by Glimmer2 putative YP_002296508.1 identified by match to protein family HMM PF04230 YP_002296511.1 identified by match to protein family HMM PF00245 match to protein family HMM TIGR01409 YP_002296512.1 identified by match to protein family HMM PF05787 YP_002296513.1 identified by match to protein family HMM PF02608 YP_002296514.1 identified by match to protein family HMM PF00005 YP_002296515.1 identified by match to protein family HMM PF02653 YP_002296516.1 identified by Glimmer2 putative YP_002296517.1 identified by match to protein family HMM PF00149 match to protein family HMM PF02872 YP_002296518.1 identified by match to protein family HMM PF05014 YP_002296521.1 identified by match to protein family HMM PF00582 YP_002296522.1 identified by match to protein family HMM PF00583 YP_002296523.1 Contains Sigma-70 region 2 and Sigma-70 region 4, see PF04542 identified by match to protein family HMM PF03061 match to protein family HMM TIGR00369 YP_002296524.1 identified by match to protein family HMM PF01575 YP_002296525.1 identified by Glimmer2 putative YP_002296526.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane YP_002296527.1 identified by match to protein family HMM PF04542 match to protein family HMM PF04545 match to protein family HMM TIGR02937 YP_002296529.1 [synonyms] ATP:glycerol 3-phosphotransferase Glycerokinase identified by match to protein family HMM PF00450 YP_002296530.1 [contains] ACT domain identified by match to protein family HMM PF01266 YP_002296531.1 Also called S-(hydroxymethyl)glutathione dehydrogenase and Glutathione-dependent formaldehyde dehydrogenase; identified by match to protein family HMM PF02615 YP_002296532.1 identified by match to protein family HMM PF00370 match to protein family HMM PF02782 match to protein family HMM TIGR01311 YP_002296533.1 identified by match to protein family HMM PF01842 YP_002296534.1 identified by match to protein family HMM PF00107 match to protein family HMM TIGR02818 YP_002296535.1 identified by match to protein family HMM PF00512 match to protein family HMM PF02518 YP_002296536.1 identified by match to protein family HMM PF00440 YP_002296537.1 No HMMs but some homologs With the same identity; identified by match to protein family HMM TIGR01730 YP_002296538.1 identified by match to protein family HMM PF00873 YP_002296539.1 identified by Glimmer2 putative YP_002296541.1 identified by match to protein family HMM PF00561 YP_002296542.1 Contains TIGR01730 YP_002296543.1 identified by match to protein family HMM PF00593 match to protein family HMM PF07715 YP_002296544.1 [synonyms] bacteriochlorophyll 4-vinyl reductase identified by match to protein family HMM PF00440 YP_002296545.1 identified by match to protein family HMM PF00529 match to protein family HMM TIGR01730 YP_002296546.1 identified by match to protein family HMM PF00873 YP_002296547.1 [synonyms] PHA depolymerase PHB depolymerase identified by match to protein family HMM PF02310 match to protein family HMM PF04055 match to protein family HMM TIGR02026 YP_002296548.1 identified by match to protein family HMM PF02830 match to protein family HMM TIGR02019 YP_002296550.1 identified by match to protein family HMM PF02322 YP_002296551.1 identified by match to protein family HMM TIGR01840 YP_002296552.1 identified by match to protein family HMM PF01654 YP_002296554.1 identified by Glimmer2 putative YP_002296555.1 identified by match to protein family HMM PF00245 match to protein family HMM TIGR01409 YP_002296556.1 [Synonyms] Phytate 3-phosphatase Myo-inositol-hexaphosphate 3-phosphohydrolase identified by match to protein family HMM PF00593 match to protein family HMM PF07715 YP_002296557.1 Also called sensory transducer YP_002296558.1 identified by match to protein family HMM PF00593 match to protein family HMM PF07715 YP_002296559.1 identified by match to protein family HMM PF02333 YP_002296560.1 identified by match to protein family HMM PF00015 match to protein family HMM PF00672 match to protein family HMM PF07238 YP_002296562.1 identified by match to protein family HMM PF00015 match to protein family HMM PF00672 YP_002296563.1 Contains PF01966 identified by match to protein family HMM PF04329 match to protein family HMM PF04330 match to protein family HMM PF04331 YP_002296564.1 identified by match to protein family HMM PF06057 YP_002296565.1 identified by match to protein family HMM PF00122 match to protein family HMM PF00702 match to protein family HMM TIGR01494 match to protein family HMM TIGR01524 YP_002296566.1 identified by match to protein family HMM PF01966 YP_002296567.1 identified by match to protein family HMM PF01061 YP_002296568.1 identified by match to protein family HMM PF00005 match to protein family HMM PF01061 YP_002296569.1 identified by Glimmer2 putative YP_002296570.1 identified by match to protein family HMM PF00440 YP_002296571.1 identified by match to protein family HMM PF00593 match to protein family HMM PF07715 YP_002296574.1 identified by match to protein family HMM PF00440 YP_002296575.1 identified by match to protein family HMM PF02550 YP_002296576.1 identified by Glimmer2 putative YP_002296577.1 identified by match to protein family HMM PF01497 YP_002296578.1 identified by match to protein family HMM PF01032 YP_002296580.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_002296581.1 identified by Glimmer2 putative YP_002296582.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_002296583.1 identified by match to protein family HMM PF03477 match to protein family HMM TIGR02487 YP_002296584.1 [Includes] Adenosylcobinamide kinase Adenosylcobinamide-phosphate guanylyltransferase YP_002296585.1 identified by match to protein family HMM PF01656 match to protein family HMM PF07685 match to protein family HMM TIGR00313 YP_002296586.1 identified by match to protein family HMM PF03186 match to protein family HMM TIGR00380 YP_002296587.1 identified by match to protein family HMM PF02283 YP_002296588.1 identified by match to protein family HMM PF01923 match to protein family HMM TIGR00636 YP_002296589.1 identified by Glimmer2 putative YP_002296590.1 identified by match to protein family HMM PF00155 match to protein family HMM PF00266 match to protein family HMM TIGR01409 YP_002296591.1 identified by match to protein family HMM PF00015 match to protein family HMM PF00989 match to protein family HMM TIGR00229 YP_002296594.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space YP_002296595.1 identified by Glimmer2 putative YP_002296596.1 identified by match to protein family HMM PF00756 YP_002296597.2 identified by match to protein family HMM PF00593 match to protein family HMM PF07715 match to protein family HMM TIGR01783 YP_003475887.1 identified by match to protein family HMM PF00593 match to protein family HMM PF07715 match to protein family HMM TIGR01783 YP_002296599.1 identified by match to protein family HMM PF01584 match to protein family HMM PF02518 YP_002296600.1 identified by match to protein family HMM PF01627 YP_002296601.1 Chemotaxis response regulator; identified by match to protein family HMM PF00072 YP_002296602.1 identified by match to protein family HMM PF01739 match to protein family HMM PF03705 YP_002296604.1 [contains] response regulator receiver domain; PAS domain S-box; identified by match to protein family HMM PF00072 match to protein family HMM PF01339 YP_002296605.1 Part of the sigB operon.Alternate name: modulator protein RsbR identified by match to protein family HMM PF00072 match to protein family HMM PF00989 match to protein family HMM TIGR00229 YP_002296606.1 identified by match to protein family HMM PF02518 YP_002296607.1 identified by match to protein family HMM PF02518 YP_002296608.1 identified by match to protein family HMM PF01740 YP_002296609.1 identified by Glimmer2 putative YP_002296610.1 Also called response regulator receiver; identified by match to protein family HMM PF00072 YP_002296611.1 identified by match to protein family HMM PF00512 match to protein family HMM PF00989 match to protein family HMM PF02518 match to protein family HMM TIGR00229 YP_002296612.1 Contains PF00072 YP_002296613.1 PF00535 identified by match to protein family HMM PF00072 YP_002296614.1 identified by match to protein family HMM PF00015 YP_002296615.1 identified by match to protein family HMM PF00072 match to protein family HMM PF00196 YP_002296616.1 identified by Glimmer2 putative YP_002296617.1 identified by match to protein family HMM PF00535 YP_002296618.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit YP_002296619.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex YP_002296621.1 identified by Glimmer2 putative YP_002296622.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0 YP_002296623.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0 YP_002296624.1 identified by match to protein family HMM TIGR02230 YP_002296625.1 [synonyms] ATP synt Hase subunit alpha Vegetative protein 100 YP_002296626.1 [synonyms] ATP synt Hase gamma chain identified by match to protein family HMM PF00119 match to protein family HMM TIGR01131 YP_002296627.1 identified by Glimmer2 putative YP_002296628.1 identified by match to protein family HMM PF00430 YP_002296629.1 identified by Glimmer2 putative YP_002296630.1 [synonyms] Hydroxymethylglutaryl-CoA lyase HMG-CoA lyase identified by match to protein family HMM PF00231 YP_002296632.1 identified by match to protein family HMM PF07370 YP_002296634.1 [synonyms] 3-methylcrotonyl-CoA carboxylase biotin-containing subunit identified by match to protein family HMM PF00682 YP_002296635.1 Gene symbol synonym Alternate names: K(+) YP_002296636.1 Also called methyl-accepting chemotaxis receptor YP_002296637.1 identified by match to protein family HMM PF00015 match to protein family HMM PF00672 YP_002296638.1 identified by match to protein family HMM PF00289 match to protein family HMM PF00364 match to protein family HMM PF01071 match to protein family HMM PF02222 match to protein family HMM PF02785 match to protein family HMM PF02786 YP_002296639.1 identified by Glimmer2 putative YP_002296640.1 identified by match to protein family HMM PF00015 match to protein family HMM PF00672 YP_002296641.1 identified by Glimmer2 putative YP_002296642.1 identified by match to protein family HMM PF00378 YP_002296643.1 [synonyms] 3-Methylcrotonyl-CoA carboxylase non-biotin-containing subunit YP_002296646.1 [Synonyms] Alkane omega-hydroxylase YP_002296647.1 identified by match to protein family HMM PF01039 YP_002296648.1 [Synonyms] C signal YP_002296649.1 identified by match to protein family HMM PF00326 match to protein family HMM PF02129 YP_002296650.1 identified by match to protein family HMM PF00487 YP_002296651.1 identified by match to protein family HMM PF01323 YP_002296652.1 identified by match to protein family HMM PF00106 YP_002296653.1 identified by match to protein family HMM PF00704 YP_002296654.1 identified by match to protein family HMM PF00108 match to protein family HMM PF02803 match to protein family HMM TIGR01930 YP_002296655.1 identified by match to protein family HMM PF00440 YP_002296656.1 identified by match to protein family HMM PF00027 YP_002296657.1 identified by match to protein family HMM PF01594 YP_002296658.1 NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate YP_002296659.1 [synonyms] Lipoyl-[acyl-carrier protein] -protein-N-lipoyltransferase Lipoate-protein ligase B identified by match to protein family HMM PF00593 match to protein family HMM PF07715 YP_002296660.1 identified by Glimmer2 putative YP_002296661.1 identified by match to protein family HMM PF00571 match to protein family HMM PF01769 match to protein family HMM PF03448 match to protein family HMM TIGR00400 YP_002296662.1 identified by Glimmer2 putative YP_002296663.1 [synonyms] Acylphosphate phosphohydrolase identified by match to protein family HMM PF03099 match to protein family HMM TIGR00214 YP_002296667.1 identified by match to protein family HMM PF00708 YP_002296668.1 identified by match to protein family HMM PF00289 match to protein family HMM PF00364 match to protein family HMM PF02222 match to protein family HMM PF02785 match to protein family HMM PF02786 YP_002296669.1 identified by match to protein family HMM PF03692 YP_002296671.1 identified by match to protein family HMM PF01654 YP_002296672.1 identified by match to protein family HMM PF02322 match to protein family HMM TIGR00203 YP_002296673.1 identified by Glimmer2 putative YP_002296674.1 identified by match to protein family HMM PF01039 YP_002296675.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_002296676.1 identified by match to protein family HMM PF00702 match to protein family HMM TIGR01509 match to protein family HMM TIGR01549 YP_002296677.1 identified by Glimmer2 putative YP_002296678.1 identified by match to protein family HMM PF00849 match to protein family HMM PF01479 match to protein family HMM TIGR00005 YP_002296679.1 identified by Glimmer2 putative YP_002296681.1 [synonyms] protease Do YP_002296682.1 identified by Glimmer2 putative YP_002296684.1 Member of the two-component regulatory system kdpD YP_002296685.1 Part of the kdp operon.Also matched to PF02702: Osmosensitive K+ channel His kinase sensor domain; identified by match to protein family HMM PF00089 match to protein family HMM PF00595 match to protein family HMM TIGR02037 YP_002296687.1 identified by match to protein family HMM PF01177 match to protein family HMM TIGR00035 YP_002296688.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_002296689.1 identified by Glimmer2 putative YP_002296690.1 Alternate name; Gene symbol synonyms: momR, mor identified by match to protein family HMM PF00512 match to protein family HMM PF00582 match to protein family HMM PF02518 match to protein family HMM PF02702 YP_002296691.1 identified by match to protein family HMM PF02669 match to protein family HMM TIGR00681 YP_002296692.1 identified by match to protein family HMM PF00122 match to protein family HMM PF00702 match to protein family HMM TIGR01494 match to protein family HMM TIGR01497 YP_002296693.1 identified by match to protein family HMM PF03814 match to protein family HMM TIGR00680 YP_002296695.1 identified by match to protein family HMM PF00126 match to protein family HMM PF03466 YP_002296696.1 identified by Glimmer2 putative YP_002296697.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_002296698.1 PF01018 PF01926: GTPase of unknown function; With a good score above the trusted cutoff and uncharacterized homologs YP_002296699.1 involved in the peptidyltransferase reaction during translation YP_002296700.1 PF00829 TIGR00061: ribosomal protein L21; With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF01037 match to protein family HMM PF01047 YP_002296702.1 identified by match to protein family HMM PF00696 match to protein family HMM PF01472 match to protein family HMM TIGR01027 YP_002296703.1 identified by match to protein family HMM PF01018 match to protein family HMM PF01926 match to protein family HMM TIGR00231 match to protein family HMM TIGR02729 YP_002296704.1 identified by Glimmer2 putative YP_002296705.1 identified by Glimmer2 putative YP_002296707.1 contain iron-sulphur centres similar to those of bacterial-type 4FE-4S ferredoxins identified by match to protein family HMM PF00149 YP_002296708.1 identified by match to protein family HMM TIGR02665 YP_002296709.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC YP_002296711.1 identified by match to protein family HMM PF06796 match to protein family HMM TIGR02973 YP_002296712.1 identified by match to protein family HMM PF00037 match to protein family HMM TIGR00402 YP_002296713.1 identified by match to protein family HMM PF03892 YP_002296714.1 identified by Glimmer2 putative YP_002296715.1 identified by Glimmer2 putative YP_002296716.1 identified by match to protein family HMM PF00122 match to protein family HMM PF00403 match to protein family HMM PF00702 match to protein family HMM TIGR01494 match to protein family HMM TIGR01511 match to protein family HMM TIGR01525 YP_002296717.1 identified by match to protein family HMM TIGR01494 YP_002296718.1 identified by Glimmer2 putative YP_002296721.1 identified by match to protein family HMM PF02810 YP_002296722.1 identified by match to protein family HMM PF00175 match to protein family HMM PF00258 YP_002296724.1 Also called Propeptide, PepSY amd peptidase M4 YP_002296727.1 Also called methyl-accepting chemotaxis protein YP_002296728.1 [synonyms] Nitrogenase metalloclusters biosynthesis protein nifS YP_002296729.1 identified by match to protein family HMM PF03413 YP_002296730.1 [contains] HesB-like domain identified by match to protein family HMM PF00072 match to protein family HMM PF00486 YP_002296731.1 identified by match to protein family HMM PF00512 match to protein family HMM PF00672 match to protein family HMM PF02518 YP_002296732.1 [Synonyms] ferredoxin 2[4Fe-4S] III identified by match to protein family HMM PF00015 match to protein family HMM PF00672 YP_002296733.1 identified by match to protein family HMM PF00266 match to protein family HMM PF01212 YP_002296734.1 identified by match to protein family HMM PF01106 match to protein family HMM PF01592 match to protein family HMM PF04324 match to protein family HMM TIGR02000 YP_002296735.1 [contains] Appr-1-p processing enzyme family domain identified by match to protein family HMM PF01521 match to protein family HMM TIGR00049 YP_002296736.1 identified by Glimmer2 putative YP_002296737.1 identified by match to protein family HMM PF00037 match to protein family HMM TIGR02936 YP_002296740.1 identified by match to protein family HMM PF01661 YP_002296743.1 with SufCD activates cysteine desulfurase SufS YP_002296744.1 identified by match to protein family HMM PF01883 YP_002296745.1 identified by match to protein family HMM PF01592 match to protein family HMM TIGR01994 YP_002296746.1 identified by match to protein family HMM PF00266 match to protein family HMM PF01212 match to protein family HMM TIGR01979 YP_002296747.1 identified by match to protein family HMM PF01458 match to protein family HMM TIGR01981 YP_002296748.1 identified by match to protein family HMM PF00005 match to protein family HMM TIGR01978 YP_002296749.1 identified by Glimmer2 putative YP_002296750.1 DNA-binding response regulator.Matched to PF00072: Response regulator receiver domain and PF00486: Transcriptional regulatory protein, C terminal; identified by match to protein family HMM PF02082 match to protein family HMM TIGR00738 match to protein family HMM TIGR02944 YP_002296751.1 identified by match to protein family HMM PF01609 YP_002296753.1 identified by match to protein family HMM PF07332 YP_002296755.1 identified by Glimmer2 putative YP_002296756.1 identified by Glimmer2 putative YP_002296757.1 Also called chromosome segregation protein SMC; identified by match to protein family HMM PF00512 match to protein family HMM PF02518 YP_002296758.1 Has several homologs identified as protein-disulfide isomerase non of which are characterized; identified by match to protein family HMM PF00027 match to protein family HMM PF00999 YP_002296759.1 identified by match to protein family HMM PF00582 YP_002296760.1 identified by match to protein family HMM PF00571 YP_002296762.1 identified by Glimmer2 putative YP_002296763.1 identified by Glimmer2 putative YP_002296764.1 identified by Glimmer2 putative YP_002296765.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_002296766.1 identified by match to protein family HMM PF00633 match to protein family HMM PF00730 match to protein family HMM TIGR01084 YP_002296767.1 identified by match to protein family HMM PF00092 match to protein family HMM PF06707 YP_002296771.1 identified by Glimmer2 putative YP_002296772.1 identified by match to protein family HMM PF00128 match to protein family HMM TIGR02456 match to protein family HMM TIGR02457 YP_002296775.1 identified by match to protein family HMM PF00128 YP_002296776.1 Gene symbol synonym galDAlso matched to NAD dependent epimerase YP_002296777.1 identified by match to protein family HMM PF03976 YP_002296780.1 identified by match to protein family HMM PF01053 match to protein family HMM PF01212 YP_002296781.1 identified by match to protein family HMM PF06299 YP_002296782.1 identified by match to protein family HMM PF01979 match to protein family HMM PF07969 match to protein family HMM TIGR02318 YP_002296783.1 similarity to protein tyrosine YP_002296784.1 identified by match to protein family HMM PF01073 match to protein family HMM PF01370 match to protein family HMM PF02719 match to protein family HMM PF04321 match to protein family HMM PF07993 YP_002296785.1 identified by Glimmer2 putative YP_002296786.1 identified by match to protein family HMM PF00534 YP_002296789.1 Also called HIT family protein YP_002296790.1 Contains PF00015 YP_002296791.1 PHA synt Hase,PHB polymerase, poly-beta-hydroxybutyrate polymerase; identified by match to protein family HMM PF00441 match to protein family HMM PF02770 match to protein family HMM PF08028 YP_002296792.1 identified by Glimmer2 putative YP_002296794.1 identified by Glimmer2 putative YP_002296795.1 identified by match to protein family HMM PF00332 match to protein family HMM PF00535 YP_002296796.1 identified by match to protein family HMM PF01230 YP_002296797.1 [synonyms] PBE PBFE [Includes] Enoyl-CoA hydratase 3,2-trans-enoyl-CoA isomerase 3-hydroxyacyl-CoA dehydrogenase identified by match to protein family HMM PF00015 match to protein family HMM PF00672 YP_002296798.1 identified by match to protein family HMM PF00561 YP_002296799.1 identified by match to protein family HMM PF05233 match to protein family HMM PF07879 match to protein family HMM TIGR01848 YP_002296801.1 identified by match to protein family HMM PF05534 YP_002296803.1 identified by match to protein family HMM PF00378 match to protein family HMM PF00725 match to protein family HMM PF02737 YP_002296804.1 TIGR00225 PF03572: Peptidase family S41B; PubMed: 9141685 Microbiology; 1997 Apr143 ( Pt 4):1221-33; This article explains the characterization of this gene product; identified by match to protein family HMM PF00106 match to protein family HMM PF01370 YP_002296805.1 PF01551 identified by match to protein family HMM PF00106 YP_002296806.1 synonym identified by match to protein family HMM PF01636 YP_002296807.1 identified by match to protein family HMM PF00293 YP_002296808.1 Gene symbol synonyms identified by match to protein family HMM PF01126 YP_002296809.1 identified by match to protein family HMM PF04748 YP_002296810.1 identified by match to protein family HMM PF00595 match to protein family HMM PF03572 match to protein family HMM TIGR00225 YP_002296811.1 identified by match to protein family HMM PF01551 YP_002296812.1 identified by match to protein family HMM PF00202 match to protein family HMM TIGR01885 YP_002296813.1 [Synonyms] Geranyltranstransferase Farnesyl-diphosphate synt Hase identified by match to protein family HMM PF02274 YP_002296814.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_002296815.1 identified by Glimmer2 putative YP_002296816.1 identified by match to protein family HMM PF01206 YP_002296818.1 identified by match to protein family HMM PF00850 YP_002296819.1 PF01343 TIGR00705: signal peptide peptidase SppA, 67K type, With a good score; PubMed: 3522590 'Molecular cloning and sequencing of the sppA gene and characterization of the encoded pr identified by match to protein family HMM PF02609 match to protein family HMM TIGR01280 YP_002296820.1 identified by match to protein family HMM PF00348 YP_002296821.1 [Synonyms] Transaminase B YP_002296822.1 identified by match to protein family HMM PF02779 match to protein family HMM PF02780 match to protein family HMM TIGR00204 YP_002296824.1 Has some homology to DNA polymerase III, epsilon subunit; identified by match to protein family HMM PF08085 YP_002296825.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_002296826.1 [synonyms] NADH-dependent enoyl-ACP reductase identified by match to protein family HMM PF01343 match to protein family HMM TIGR00705 match to protein family HMM TIGR00706 YP_002296827.1 identified by match to protein family HMM PF00425 match to protein family HMM PF04715 match to protein family HMM TIGR00553 YP_002296828.1 identified by Glimmer2 putative YP_002296829.1 identified by match to protein family HMM PF01063 YP_002296830.1 identified by match to protein family HMM PF02554 YP_002296831.1 PF01556 PF00226: DnaJ domain; Has many homologs from the same family; identified by match to protein family HMM PF00929 YP_002296833.1 [synonyms] PNP YP_002296834.1 identified by match to protein family HMM PF03631 match to protein family HMM TIGR00765 YP_002296836.1 identified by Glimmer2 putative YP_002296838.1 identified by match to protein family HMM PF00226 match to protein family HMM PF01556 YP_002296839.1 Alternate name identified by match to protein family HMM PF05433 YP_002296840.1 identified by Glimmer2 putative YP_002296841.1 identified by match to protein family HMM PF01545 match to protein family HMM TIGR01297 YP_002296844.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_002296845.1 identified by Glimmer2 putative YP_002296846.1 identified by Glimmer2 putative YP_002296848.1 identified by Glimmer2 putative YP_002296849.1 identified by match to protein family HMM PF00106 match to protein family HMM PF01370 YP_002296851.1 identified by Glimmer2 putative YP_002296854.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_002296856.1 identified by match to protein family HMM PF00533 match to protein family HMM PF01653 match to protein family HMM PF03119 match to protein family HMM PF03120 match to protein family HMM TIGR00575 YP_002296858.1 identified by Glimmer2 putative YP_002296859.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_002296860.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_002296861.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_002296862.1 identified by match to protein family HMM PF02491 match to protein family HMM TIGR01174 YP_002296863.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_002296864.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_002296865.1 Gene symbol synonym mra; identified by match to protein family HMM PF01565 match to protein family HMM PF02873 match to protein family HMM TIGR00179 YP_002296866.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_002296867.1 Gene symbol synonym pbpB.Also called penicillin-binding protein 3; identified by match to protein family HMM PF01225 match to protein family HMM PF02875 match to protein family HMM TIGR01082 YP_002296868.1 identified by match to protein family HMM PF03033 match to protein family HMM PF04101 match to protein family HMM TIGR01133 YP_002296869.1 identified by match to protein family HMM PF01098 match to protein family HMM TIGR02614 YP_002296870.1 identified by match to protein family HMM PF02875 match to protein family HMM TIGR01087 YP_002296871.1 identified by match to protein family HMM PF00953 match to protein family HMM TIGR00445 YP_002296872.1 identified by match to protein family HMM PF01225 match to protein family HMM PF02875 match to protein family HMM TIGR01143 YP_002296873.1 ABC transporter ATP-binding protein identified by match to protein family HMM PF01225 match to protein family HMM PF02875 match to protein family HMM TIGR01085 YP_002296874.1 PF00226 Has many homologs from the same family, many of which are DnaJ-like protein djLA; SP:Q45885: DnaJ-like protein djlA (Mucoidy activation protein mucZ); identified by match to protein family HMM PF00905 match to protein family HMM PF03717 YP_002296876.1 identified by match to protein family HMM PF01795 match to protein family HMM TIGR00006 YP_002296877.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_002296878.1 identified by Glimmer2 putative YP_002296879.1 identified by Glimmer2 putative YP_002296880.1 identified by Glimmer2 putative YP_002296881.1 Contains PF02518, PF00072, and TIGR00229; identified by match to protein family HMM PF00226 YP_002296882.1 identified by match to protein family HMM PF00583 YP_002296883.1 identified by match to protein family HMM PF01968 match to protein family HMM PF02538 match to protein family HMM PF05378 YP_002296884.1 identified by Glimmer2 putative YP_002296885.1 Has no HMMs but some homologs With the identification of thiolSome other homologs are identified as: C-type cytochrome biogenesis protein i.g; GB:AAY47612.1 YP_002296887.1 PF05193 PF00675: Insulinase (Peptidase family M16) YP_002296888.1 identified by match to protein family HMM PF00072 match to protein family HMM PF00512 match to protein family HMM PF01627 match to protein family HMM PF02518 match to protein family HMM TIGR00229 YP_002296890.1 5'-methylthioadenosine nucleosidaseS-adenosylhomocysteine nucleosidase identified by match to protein family HMM PF00126 match to protein family HMM PF03466 YP_002296891.1 identified by match to protein family HMM PF00070 match to protein family HMM PF01134 match to protein family HMM PF07992 match to protein family HMM TIGR01292 YP_002296892.1 identified by Glimmer2 putative YP_002296894.1 identified by match to protein family HMM TIGR01409 YP_002296895.1 identified by match to protein family HMM PF00675 match to protein family HMM PF05193 YP_002296896.1 identified by match to protein family HMM PF00378 YP_002296897.1 identified by match to protein family HMM PF00270 match to protein family HMM PF00271 YP_002296898.1 identified by match to protein family HMM PF00023 match to protein family HMM PF01048 match to protein family HMM TIGR01704 YP_002296899.1 identified by match to protein family HMM PF00903 YP_002296900.1 identified by Glimmer2 putative YP_002296901.1 identified by match to protein family HMM PF04227 YP_002296902.1 identified by Glimmer2 putative YP_002296903.1 PF00535 identified by match to protein family HMM PF01068 match to protein family HMM PF01331 match to protein family HMM PF04679 YP_002296907.1 D-N-alpha-carbamilase identified by match to protein family HMM PF04952 YP_002296909.1 identified by match to protein family HMM PF00534 YP_002296911.1 identified by match to protein family HMM PF00535 YP_002296912.1 identified by match to protein family HMM PF01381 YP_002296913.1 Gene symbol synonyms identified by match to protein family HMM PF00535 YP_002296914.1 identified by Glimmer2 putative YP_002296915.1 identified by Glimmer2 putative YP_002296916.1 identified by match to protein family HMM PF01047 YP_002296917.1 identified by match to protein family HMM PF03544 match to protein family HMM TIGR01352 YP_002296918.1 identified by match to protein family HMM PF00005 YP_002296919.1 identified by Glimmer2 putative YP_002296920.1 One of three proteins involved in switching the direction of the flagellar rotation YP_002296921.1 identified by Glimmer2 putative YP_002296923.1 Secretion protein from the HlyD family.Contains TIGR01730: efflux transporter RND family, MFP subunit YP_002296924.1 identified by Glimmer2 putative YP_002296925.1 identified by match to protein family HMM PF01895 match to protein family HMM TIGR02135 YP_002296926.1 identified by Glimmer2 putative YP_002296927.1 identified by Glimmer2 putative YP_002296928.1 Links inner and outer membranes; identified by match to protein family HMM PF01706 match to protein family HMM TIGR00207 YP_002296930.1 identified by match to protein family HMM PF00873 YP_002296931.1 identified by match to protein family HMM PF00529 match to protein family HMM TIGR01730 YP_002296933.1 identified by Glimmer2 putative YP_002296935.1 Contains PF02518 YP_002296936.1 identified by match to protein family HMM TIGR01352 YP_002296937.1 identified by Glimmer2 putative YP_002296938.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002296939.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_002296940.1 Modulates Rho-dependent transcription termination YP_002296941.1 TIGR01632 PF03946: Ribosomal protein L11, N-terminal domain; PF00298: Ribosomal protein L11, RNA binding domain; With a good score above the trusted cutoff and uncharacterized homologs YP_002296942.1 TIGR01169 PF00687: L1P family of ribosomal proteins; With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF00072 match to protein family HMM PF00486 YP_002296943.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_002296944.1 TIGR00855 PF00542: Ribosomal protein L7 YP_002296945.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_002296946.1 identified by match to protein family HMM PF00009 match to protein family HMM PF03143 match to protein family HMM PF03144 match to protein family HMM TIGR00231 match to protein family HMM TIGR00485 YP_002296947.1 [contains] helix-turn-helix motif in region 16-69 identified by match to protein family HMM PF00584 match to protein family HMM TIGR00964 YP_002296948.1 identified by match to protein family HMM PF00467 match to protein family HMM PF02357 match to protein family HMM TIGR00922 YP_002296949.1 identified by match to protein family HMM PF00298 match to protein family HMM PF03946 match to protein family HMM TIGR01632 YP_002296950.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_002296951.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_002296952.1 TIGR00484 PF00009: Elongation factor Tu GTP binding domain; With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF00542 match to protein family HMM TIGR00855 YP_002296953.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002296954.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_002296955.1 PF00297 With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF01381 YP_002296956.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_002296957.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_002296958.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_002296959.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_002296960.1 TIGR01044 PF00237: Ribosomal protein L22p YP_002296961.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_002296962.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_002296963.1 one of the stabilizing components for the large ribosomal subunit YP_002296964.1 identified by match to protein family HMM PF00573 YP_002296965.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_002296966.1 identified by match to protein family HMM PF00181 match to protein family HMM PF03947 match to protein family HMM TIGR01171 YP_002296967.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_002296968.1 identified by match to protein family HMM PF00237 match to protein family HMM TIGR01044 YP_002296969.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_002296970.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_002296971.1 identified by match to protein family HMM PF00831 match to protein family HMM TIGR00012 YP_002296972.1 identified by match to protein family HMM PF00366 YP_002296973.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_002296974.1 identified by match to protein family HMM PF00467 match to protein family HMM TIGR01079 YP_002296975.1 identified by match to protein family HMM PF00281 match to protein family HMM PF00673 YP_002296976.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_002296977.1 identified by match to protein family HMM PF00410 YP_002296978.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_002296979.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_002296980.1 identified by match to protein family HMM PF00333 match to protein family HMM PF03719 match to protein family HMM TIGR01021 YP_002296981.1 identified by Glimmer2 putative YP_002296982.1 identified by match to protein family HMM PF00256 match to protein family HMM PF01305 match to protein family HMM TIGR01071 YP_002296983.1 identified by Glimmer2 putative YP_002296984.1 identified by match to protein family HMM PF00406 match to protein family HMM PF05191 match to protein family HMM TIGR01351 YP_002296985.1 identified by Glimmer2 putative YP_002296986.1 identified by match to protein family HMM PF00411 YP_002296987.1 identified by match to protein family HMM PF01000 match to protein family HMM PF01193 match to protein family HMM PF03118 match to protein family HMM TIGR02027 YP_002296988.1 identified by match to protein family HMM PF01196 match to protein family HMM TIGR00059 YP_002296989.1 activates fatty acids by binding to coenzyme A YP_002296990.1 identified by match to protein family HMM PF05239 YP_002296992.1 8-amino-7-ketopelargonate synt Hase7-keto-8-amino-pelargonic acid synthetase 7-KAP synthetase L-alanine--pimelyl CoA ligase YP_002296994.1 identified by match to protein family HMM PF06439 YP_002296995.1 identified by match to protein family HMM PF04333 YP_002296997.1 identified by Glimmer2 putative YP_002296998.1 identified by match to protein family HMM PF00106 match to protein family HMM PF01073 match to protein family HMM PF01370 match to protein family HMM PF04321 match to protein family HMM PF07993 YP_002296999.1 identified by match to protein family HMM PF00550 YP_002297000.1 identified by match to protein family HMM PF00155 match to protein family HMM PF00202 match to protein family HMM PF00266 match to protein family HMM PF00464 match to protein family HMM PF01212 YP_002297005.1 Bkd operon transcriptional regulator; Possible alternate gene symbol; bkdR YP_002297006.1 identified by match to protein family HMM PF00149 YP_002297008.1 identified by Glimmer2 putative YP_002297009.1 identified by match to protein family HMM PF03739 YP_002297010.1 identified by match to protein family HMM PF04116 YP_002297012.1 identified by match to protein family HMM PF01037 YP_002297014.1 identified by match to protein family HMM PF01262 match to protein family HMM PF05222 match to protein family HMM TIGR00518 YP_002297015.1 identified by match to protein family HMM PF00753 YP_002297017.1 identified by match to protein family HMM PF01047 YP_002297018.1 identified by match to protein family HMM PF04273 match to protein family HMM TIGR01244 YP_002297020.1 identified by match to protein family HMM PF01658 match to protein family HMM PF07994 YP_002297021.1 identified by Glimmer2 putative YP_002297022.1 identified by Glimmer2 putative YP_002297023.1 synonym identified by match to protein family HMM PF00483 YP_002297024.1 [synonyms] GeneName: coxII, ctaB, ctaC YP_002297025.1 [synonyms] GeneName: ctaD YP_002297026.1 identified by Glimmer2 putative YP_002297027.1 identified by match to protein family HMM PF00534 YP_002297031.1 identified by match to protein family HMM PF00291 YP_002297032.1 identified by match to protein family HMM PF00116 match to protein family HMM PF02790 match to protein family HMM TIGR02866 ; Sigma-54 interaction domain YP_002297033.1 identified by match to protein family HMM PF00115 match to protein family HMM TIGR02891 YP_002297034.1 membrane protein involved in the flagellar export apparatus YP_002297035.1 Contains PF00158 YP_002297036.1 motA is also known as pomA; identified by match to protein family HMM PF01609 YP_002297037.1 Part of the C ring in the flagellar basal body of many bacteria along With fliG and fliM.Orgainization of fliN in the C ring, see J Bacteriol; 2006 Apr188(7):2502-11 YP_002297038.1 Export component negative regulator of FliI cytoplasmic; identified by match to protein family HMM PF00994 match to protein family HMM PF03453 match to protein family HMM PF03454 match to protein family HMM TIGR00177 YP_002297039.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_002297040.1 identified by match to protein family HMM PF01656 YP_002297041.1 identified by match to protein family HMM PF00448 YP_002297042.1 identified by match to protein family HMM PF00771 match to protein family HMM TIGR01398 YP_002297043.1 identified by match to protein family HMM PF00072 match to protein family HMM PF00158 match to protein family HMM PF02954 match to protein family HMM PF07728 YP_002297044.1 identified by match to protein family HMM PF01618 YP_002297045.1 identified by match to protein family HMM PF01052 match to protein family HMM TIGR02480 YP_002297047.1 Gene symbol synonym identified by match to protein family HMM PF01514 match to protein family HMM TIGR00206 YP_002297048.1 identified by match to protein family HMM PF00614 YP_002297049.1 PF00310 identified by match to protein family HMM PF05532 YP_002297052.1 identified by match to protein family HMM PF01618 YP_002297053.1 PF01625 identified by match to protein family HMM PF01618 YP_002297054.1 identified by Glimmer2 putative YP_002297055.1 identified by match to protein family HMM PF03544 match to protein family HMM TIGR01352 YP_002297056.1 identified by Glimmer2 putative YP_002297057.1 identified by match to protein family HMM PF00310 YP_002297058.1 identified by match to protein family HMM PF00593 match to protein family HMM PF07715 YP_002297060.1 Gene symbol synonyms rffG, rmlB.Part of an rfb gene cluster; identified by match to protein family HMM PF01975 match to protein family HMM TIGR00087 YP_002297061.1 Gene symobol synonym rmlA.Part of a rfb gene cluster; Alternate name: dTDP-D-glucose synt Hase homotetramer YP_002297062.1 identified by match to protein family HMM PF01625 match to protein family HMM TIGR00401 YP_002297063.1 Contains PF01061 YP_002297066.1 PF00535 identified by match to protein family HMM PF00873 match to protein family HMM TIGR00914 YP_002297067.1 PF00535 YP_002297069.1 identified by match to protein family HMM TIGR01656 match to protein family HMM TIGR01662 YP_002297070.1 identified by Glimmer2 putative YP_002297071.1 Also called paracrystalline surface layer protein YP_002297072.1 identified by match to protein family HMM PF01061 YP_002297073.1 Gene name synonym sedoheptulose 7-phosphate isomerase.Gene symbol synonyms lpcA tfrA; identified by match to protein family HMM PF00005 YP_002297074.1 identified by match to protein family HMM PF01041 YP_002297075.1 GB identified by match to protein family HMM PF00535 YP_002297076.1 identified by match to protein family HMM PF00535 YP_002297077.1 identified by match to protein family HMM PF00534 match to protein family HMM PF00535 YP_002297078.1 identified by match to protein family HMM PF01381 YP_002297079.1 identified by Glimmer2 putative YP_002297081.1 identified by Glimmer2 putative YP_002297083.1 identified by match to protein family HMM PF01047 match to protein family HMM PF03551 YP_002297084.1 identified by Glimmer2 putative YP_002297085.1 identified by Glimmer2 putative YP_002297088.1 identified by Glimmer2 putative YP_002297090.1 identified by match to protein family HMM PF03591 YP_002297091.1 identified by match to protein family HMM PF05437 YP_002297093.1 identified by Glimmer2 putative YP_002297094.1 identified by Glimmer2 putative YP_002297097.1 identified by match to protein family HMM PF00691 match to protein family HMM PF01389 match to protein family HMM PF01617 match to protein family HMM PF02462 YP_002297098.1 identified by match to protein family HMM PF00691 YP_002297099.1 identified by match to protein family HMM PF00196 YP_002297100.1 identified by match to protein family HMM PF00072 match to protein family HMM PF00196 YP_002297103.1 identified by match to protein family HMM PF04378 YP_002297104.1 identified by match to protein family HMM PF00892 YP_002297105.1 Contains Sigma-70 region 2 and Sigma-70 region 4, see PF04542 identified by match to protein family HMM PF01464 YP_002297106.1 identified by Glimmer2 putative YP_002297107.1 Synonym identified by match to protein family HMM PF04325 YP_002297108.1 identified by match to protein family HMM PF05401 match to protein family HMM PF07719 match to protein family HMM PF07721 YP_002297109.1 identified by match to protein family HMM PF04172 YP_002297110.1 identified by match to protein family HMM PF03788 YP_002297111.1 ATP-independent RNA helicase YP_002297112.1 TIGR00503 With a good score above the trusted cutoff and characterized homologs YP_002297113.1 identified by Glimmer2 putative YP_002297114.1 identified by Glimmer2 putative YP_002297116.1 identified by Glimmer2 putative YP_002297118.1 identified by match to protein family HMM PF01979 match to protein family HMM PF07969 YP_002297120.1 identified by match to protein family HMM PF00270 match to protein family HMM PF00271 YP_002297121.1 Gene symbol synonym flbO; identified by match to protein family HMM PF00009 match to protein family HMM PF03144 match to protein family HMM TIGR00231 match to protein family HMM TIGR00503 YP_002297122.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum YP_002297124.1 identified by match to protein family HMM PF00015 YP_002297126.1 identified by Glimmer2 putative YP_002297127.1 identified by match to protein family HMM PF06094 YP_002297128.1 identified by match to protein family HMM PF04168 match to protein family HMM PF04169 match to protein family HMM PF04174 YP_002297129.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_002297131.1 identified by Glimmer2 putative YP_002297133.1 Part of the proximal rod With fliE and flgC transmission shaft periplasmic space YP_002297134.1 Part of the hook-basal body (HBB) complex of the bacterial flagella.Component of the proximal rod transmission shaft With fliE and flgB; Located in the periplasmic space YP_002297135.1 Part of the proximal rod With flgB and flgC.MS-ring rod junction protein export gate periplasmic space YP_002297136.1 Part of the fliQR operon.Type III secretion system; Export component integral to plasma membrane; identified by match to protein family HMM PF00691 YP_002297137.1 Export component integral to plasma membrane; identified by match to protein family HMM PF00515 match to protein family HMM PF07721 YP_002297138.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_002297139.1 Sensory box histidine kinase YP_002297140.1 Also called methyl-accepting chemotaxis receptor YP_002297141.1 Also called methyl-accepting chemotaxis receptor YP_002297142.1 identified by match to protein family HMM TIGR01396 YP_002297143.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002297144.1 identified by match to protein family HMM PF02049 YP_002297145.1 identified by match to protein family HMM PF01313 match to protein family HMM TIGR01402 YP_002297146.1 identified by match to protein family HMM PF01311 match to protein family HMM TIGR01400 YP_002297147.1 Alternate names identified by match to protein family HMM PF01312 match to protein family HMM TIGR00328 YP_002297148.1 identified by match to protein family HMM PF00072 match to protein family HMM PF00512 match to protein family HMM PF02518 match to protein family HMM TIGR00229 YP_002297149.1 catalyzes the formation of 2-oxoglutarate from isocitrate YP_002297150.1 identified by match to protein family HMM PF00015 match to protein family HMM PF00672 YP_002297151.1 identified by match to protein family HMM PF00154 match to protein family HMM TIGR02012 YP_002297152.1 identified by match to protein family HMM PF01411 match to protein family HMM PF02272 match to protein family HMM PF07973 match to protein family HMM TIGR00344 YP_002297153.1 identified by match to protein family HMM PF00004 match to protein family HMM PF07728 YP_002297154.1 identified by match to protein family HMM PF00211 YP_002297155.1 identified by match to protein family HMM PF05762 YP_002297156.1 identified by match to protein family HMM PF00180 match to protein family HMM TIGR02924 YP_002297157.1 identified by Glimmer2 putative YP_002297158.1 identified by Glimmer2 putative YP_002297159.1 identified by Glimmer2 putative YP_002297160.1 identified by Glimmer2 putative YP_002297161.1 identified by match to protein family HMM PF00180 match to protein family HMM TIGR00127 YP_002297162.1 Catalyzes the rate-limiting step in dNTP synthesis YP_002297163.1 identified by match to protein family HMM PF03641 match to protein family HMM TIGR00730 YP_002297164.1 Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis YP_002297165.1 identified by match to protein family HMM PF01292 YP_002297167.1 PF03588 TIGR00667: leucyl YP_002297168.1 Also called methyl-accepting chemotaxis receptor YP_002297169.1 [Synonyms] fabG Acetyl-CoA carboxylase subunit A [function] This protein is a component of the acetyl coenzyme A carboxylase complex YP_002297170.1 [synonyms] fabE [function] This protein is a component of the acetyl coenzyme A carboxylase complex first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malony YP_002297171.1 also known as dehydroquinase class II YP_002297172.1 identified by match to protein family HMM PF02867 match to protein family HMM TIGR02504 YP_002297173.1 PF01435 YP_002297174.1 identified by match to protein family HMM PF05071 YP_002297175.1 PF01136 identified by match to protein family HMM PF02470 YP_002297176.1 PF01136 Has uncharacterized homologs YP_002297177.1 No HMMs and With conserved hypothetical homologs; identified by match to protein family HMM PF03588 match to protein family HMM TIGR00667 YP_002297178.1 identified by match to protein family HMM PF00015 match to protein family HMM PF00672 YP_002297179.1 identified by match to protein family HMM PF00289 match to protein family HMM PF01071 match to protein family HMM PF02222 match to protein family HMM PF02785 match to protein family HMM PF02786 match to protein family HMM TIGR00514 YP_002297180.1 identified by Glimmer2 putative YP_002297181.1 identified by match to protein family HMM PF01220 match to protein family HMM TIGR01088 YP_002297182.1 identified by match to protein family HMM PF01323 YP_002297183.1 identified by match to protein family HMM PF01435 match to protein family HMM PF07719 YP_002297184.1 identified by match to protein family HMM PF00155 YP_002297185.1 identified by match to protein family HMM PF01136 YP_002297186.1 identified by match to protein family HMM PF01136; one gene withORF00936 YP_002297187.1 identified by match to protein family HMM PF00561 YP_002297188.1 identified by match to protein family HMM PF03054 match to protein family HMM TIGR00420 YP_002297189.1 identified by Glimmer2 putative YP_002297191.1 Phospho-2-dehydro-3-deoxyheptonate aldolase 1,(Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHPsynthetase 1) (3-deoxy-D-arabino-heptulosonate 7-phosphate synt Hase1) YP_002297192.1 PF01979 Has some homologs With the same identity; Shared homology With Xaa-Pro dipeptidase GB:BAA77794.1 shows that the gene Has been cloned and expressed (PUBMED: 9989239); identified by match to protein family HMM PF05860 match to protein family HMM PF07581 match to protein family HMM TIGR01901 YP_002297194.1 Also called response regulator receiver; identified by match to protein family HMM PF00515 match to protein family HMM PF07719 YP_002297195.1 identified by Glimmer2 putative YP_002297196.1 Contains GAF domain YP_002297197.1 NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_002297198.1 identified by Glimmer2 putative YP_002297199.1 Also many matches to oligopeptide ABC transporter; identified by match to protein family HMM PF01474 match to protein family HMM TIGR01358 YP_002297200.1 PF00254Characterization: SP:O08437 identified by match to protein family HMM PF01979 match to protein family HMM PF07969 YP_002297202.1 identified by match to protein family HMM PF00072 YP_002297203.1 identified by Glimmer2 putative YP_002297204.1 identified by match to protein family HMM PF00563 match to protein family HMM PF00989 match to protein family HMM PF00990 match to protein family HMM PF01590 match to protein family HMM TIGR00229 match to protein family HMM TIGR00254 YP_002297205.1 Contains Sigma-70 region 2 and Sigma-70 region 4, see PF04542 identified by match to protein family HMM PF00795 match to protein family HMM PF02540 match to protein family HMM TIGR00552 YP_002297206.1 identified by match to protein family HMM PF01266 YP_002297207.1 identified by Glimmer2 putative YP_002297209.1 identified by match to protein family HMM PF00496 YP_002297210.1 identified by Glimmer2 putative YP_002297211.1 ATP pyrophosphate-lyase 1, Adenylylcyclase 1 YP_002297212.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_002297213.1 TIGR00435 With a good score above the trusted cutoff and characterized homologs YP_002297215.1 identified by match to protein family HMM PF04542 match to protein family HMM PF04545 match to protein family HMM TIGR02937 YP_002297216.1 identified by Glimmer2 putative YP_002297217.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_002297218.1 identified by match to protein family HMM PF00378 YP_002297219.1 identified by Glimmer2 putative YP_002297222.1 Contains PF03806 identified by match to protein family HMM PF00749 match to protein family HMM TIGR00464 YP_002297223.1 identified by match to protein family HMM PF01406 match to protein family HMM TIGR00435 YP_002297224.1 identified by match to protein family HMM PF00682 match to protein family HMM TIGR00977 YP_002297225.1 identified by match to protein family HMM PF00588 match to protein family HMM TIGR00050 YP_002297227.1 Contains PF00512 and PF02518; identified by match to protein family HMM PF00163 match to protein family HMM PF01479 match to protein family HMM TIGR01017 YP_002297230.1 identified by match to protein family HMM PF00561 YP_002297232.1 TIGR00916 identified by match to protein family HMM PF03806 YP_002297233.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine YP_002297234.1 identified by match to protein family HMM PF01722 YP_002297235.1 identified by match to protein family HMM PF00586 match to protein family HMM PF02769 match to protein family HMM TIGR01736 YP_002297236.1 identified by match to protein family HMM PF07685 match to protein family HMM TIGR01737 YP_002297237.1 Contains PF00072 identified by match to protein family HMM PF00512 match to protein family HMM PF02518 YP_002297238.1 Contains PF02518 YP_002297239.1 TIGR01891 PF01546: Peptidase family M20 YP_002297240.1 identified by match to protein family HMM PF00072 YP_002297241.1 identified by match to protein family HMM PF06055 YP_002297242.1 identified by Glimmer2 putative YP_002297243.1 identified by match to protein family HMM PF00155 match to protein family HMM PF01053 match to protein family HMM PF01212 match to protein family HMM TIGR01821 YP_002297244.1 identified by Glimmer2 putative YP_002297245.1 Stator protein converts proton energy into torque integral to plasma membrane; identified by match to protein family HMM PF01609 YP_002297246.1 identified by match to protein family HMM PF00155 match to protein family HMM PF00392 YP_002297247.1 identified by match to protein family HMM PF00072 match to protein family HMM PF00486 YP_002297248.1 Belongs to TIGR01411 identified by match to protein family HMM PF00512 match to protein family HMM PF00672 match to protein family HMM PF02518 YP_002297249.1 part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_002297251.1 identified by match to protein family HMM PF05960 match to protein family HMM TIGR01409 YP_002297255.1 identified by Glimmer2 putative YP_002297256.1 identified by match to protein family HMM PF01618 YP_002297258.1 identified by match to protein family HMM PF02416 match to protein family HMM TIGR01411 YP_002297259.1 identified by match to protein family HMM PF02355 match to protein family HMM PF07549 match to protein family HMM TIGR00916 match to protein family HMM TIGR00966 match to protein family HMM TIGR01129 YP_002297261.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_002297262.1 identified by match to protein family HMM PF00278 match to protein family HMM PF02784 YP_002297264.1 identified by match to protein family HMM PF00441 match to protein family HMM PF02770 match to protein family HMM PF08028 YP_002297266.1 identified by match to protein family HMM PF03372 YP_002297267.1 identified by match to protein family HMM PF04828 YP_002297268.1 Part of the twin-arginine translocation (Tat) pathway; identified by match to protein family HMM PF03372 match to protein family HMM TIGR00195 match to protein family HMM TIGR00633 YP_002297269.1 Part of the twin-arginine translocation (Tat) pathway; identified by match to protein family HMM PF01521 match to protein family HMM TIGR00049 YP_002297270.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002297271.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_002297272.1 TIGR00080 identified by match to protein family HMM PF05036 YP_002297273.1 identified by match to protein family HMM PF00933 YP_002297274.1 identified by Glimmer2 putative YP_002297275.1 identified by Glimmer2 putative YP_002297276.1 identified by match to protein family HMM PF04079 match to protein family HMM TIGR00281 YP_002297277.1 preprotein translocase subunit YajC.FUNCTION: Not known may be immunogenic membrane protein as one homolog elicits an immunogenic response in mice; identified by match to protein family HMM PF02416 match to protein family HMM TIGR01411 YP_002297278.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_002297279.1 [function] Possible flavoprotein oxidoreductase; Probably part of an operon y4aABCD involved in the synthesis of an isoprenoid compound; [similarity] To phytoene dehydrogenase and to amine oxidase; identified by match to protein family HMM PF00902 match to protein family HMM TIGR00945 YP_002297280.1 [region] 27-288: similar to Hypothetical 32.5 kDa protein y4aD of Rhizobium sp; 299-572: putative phytoene synt Hase [function] Probably part of the operon y4aABCD involved in the synthesis of an isoprenoid compound [similarity] To phytoene and squal identified by match to protein family HMM PF00587 match to protein family HMM PF02403 match to protein family HMM TIGR00414 YP_002297281.1 identified by match to protein family HMM PF01975 match to protein family HMM TIGR00087 YP_002297282.1 identified by match to protein family HMM PF01135 match to protein family HMM TIGR00080 YP_002297283.1 identified by match to protein family HMM PF01476 match to protein family HMM PF01551 YP_002297285.1 Alternate name YP_002297286.1 Alternate name identified by match to protein family HMM PF05673 YP_002297287.1 [synonyms] CDP-diglyceride-choline O-phosphatidyltransferase identified by match to protein family HMM PF02699 match to protein family HMM TIGR00739 YP_002297288.1 identified by Glimmer2 putative YP_002297289.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_002297290.1 identified by match to protein family HMM PF00494 YP_002297291.1 identified by match to protein family HMM PF00081 match to protein family HMM PF02777 YP_002297293.1 identified by Glimmer2 putative YP_002297294.1 Gene symbol synonym pmpM YP_002297295.1 identified by match to protein family HMM PF01094 YP_002297296.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_002297297.1 identified by Glimmer2 putative YP_002297298.1 identified by Glimmer2 putative YP_002297303.1 next to the CO dehydrogenase accessory factor, possibly involved in the attachment of molybdenum to CO dehydrogenase; identified by match to protein family HMM PF06206 YP_002297304.1 part of the CO oxidising (Cox) system operon; identified by match to protein family HMM PF01467 match to protein family HMM TIGR00125 match to protein family HMM TIGR01510 YP_002297305.1 part of the CO oxidising (Cox) system operon YP_002297306.1 part of the CO oxidising (Cox) system operon.[synonyms] CO dehydrogenase subunit M YP_002297307.1 part of the CO oxidising (Cox) system operon.[synonyms] CO dehydrogenase subunit L identified by match to protein family HMM PF01471 YP_002297308.1 part of the CO oxidising (Cox) system operon.[synonyms] CO dehydrogenase subunit S identified by match to protein family HMM PF05433 YP_002297309.1 part of the CO oxidising (Cox) system operon; identified by match to protein family HMM PF00005 match to protein family HMM PF00664 YP_002297310.1 part of the CO oxidising (Cox) system operon; identified by match to protein family HMM PF00994 match to protein family HMM PF01128 YP_002297312.1 identified by Glimmer2 putative YP_002297313.1 identified by match to protein family HMM PF02625 YP_002297314.1 identified by match to protein family HMM PF05762 YP_002297315.1 identified by match to protein family HMM PF07728 YP_002297316.1 identified by Glimmer2 putative YP_002297317.1 part of the putative prophage RcenMu genome; identified by match to protein family HMM PF01315 match to protein family HMM PF02738; similar to phage Mu genome YP_002297318.1 identified by Glimmer2 putative YP_002297319.1 identified by Glimmer2 putative YP_002297320.1 part of the putative prophage RcenMu genome; similar to phage Mu genome YP_002297321.1 part of the putative prophage RcenMu genome; identified by match to protein family HMM PF02643; similar to phage Mu genome YP_002297322.1 part of the putative prophage RcenMu genome; similar to phage Mu genome YP_002297323.1 part of the putative prophage RcenMu genome; identified by match to protein family HMM PF01596 YP_002297324.1 part of the putative prophage RcenMu genome; identified by match to protein family HMM PF00892 YP_002297325.1 part of the putative prophage RcenMu genome; identified by match to protein family HMM PF04800 YP_002297326.1 part of the putative prophage RcenMu genome YP_002297327.1 part of the putative prophage RcenMu genome YP_002297328.1 gp05species of closest match: Burkhol YP_002297329.1 part of the putative prophage RcenMu genome YP_002297330.1 part of the putative prophage RcenMu genome; identified by match to protein family HMM PF00665 YP_002297331.1 part of the putative prophage RcenMu genome YP_002297332.1 part of the putative prophage RcenMu genome; similar to phage Mu genome YP_002297333.1 part of the putative prophage RcenMu genome YP_002297334.1 part of the putative prophage RcenMu genome; similar to phage Mu genome YP_002297335.1 part of the putative prophage RcenMu genome YP_002297336.1 part of the putative prophage RcenMu genome YP_002297337.1 part of the putative prophage RcenMu genome YP_002297338.1 part of the putative prophage RcenMu genome; similar to phage Mu genome YP_002297339.1 part of the putative prophage RcenMu genome; similar to phage Mu genome YP_002297340.1 part of the putative prophage RcenMu genome; similar to phage Mu genome; similar to phage Mu genome YP_002297341.1 part of the putative prophage RcenMu genome; similar to phage Mu genome YP_002297342.1 part of the putative prophage RcenMu genome; identified by match to protein family HMM PF06252; similar to phage Mu genome YP_002297343.1 part of the putative prophage RcenMu genome YP_002297344.1 part of the putative prophage RcenMu genome YP_002297345.1 part of the putative prophage RcenMu genome; identified by match to protein family HMM PF05838 YP_002297346.1 part of the putative prophage RcenMu genome YP_002297347.1 part of the putative prophage RcenMu genome YP_002297348.1 part of the putative prophage RcenMu genome; similar to phage Mu genome YP_002297349.1 part of the putative prophage RcenMu genome; similar to phage Mu genome YP_002297350.1 part of the putative prophage RcenMu genome YP_002297351.1 part of the putative prophage RcenMu genome YP_002297352.1 part of the putative prophage RcenMu genome YP_002297353.1 part of the putative prophage RcenMu genome; identified by match to protein family HMM PF04233 YP_002297354.1 part of the putative prophage RcenMu genome YP_002297355.1 part of the putative prophage RcenMu genome YP_002297356.1 part of the putative prophage RcenMu genome YP_002297357.1 part of the putative prophage RcenMu genome YP_002297358.1 part of the putative prophage RcenMu genome; identified by match to protein family HMM PF07030 YP_002297359.1 part of the putative prophage RcenMu genome; identified by match to protein family HMM PF05069 match to protein family HMM TIGR01635 YP_002297360.1 part of the putative prophage RcenMu genome YP_002297361.1 part of the putative prophage RcenMu genome YP_002297362.1 part of the putative prophage RcenMu genome; identified by match to protein family HMM PF04984 YP_002297363.1 gp51 species of closest match is Burkhol YP_002297364.1 part of the putative prophage RcenMu genome YP_002297365.1 part of the putative prophage RcenMu genome YP_002297366.1 part of the putative prophage RcenMu genome; identified by match to protein family HMM TIGR01760 YP_002297367.1 part of the putative prophage RcenMu genome YP_002297368.1 part of the putative prophage RcenMu genome; identified by match to protein family HMM PF05489 YP_002297369.1 part of the putative prophage RcenMu genome; identified by match to protein family HMM PF05954 YP_002297370.1 identified by match to protein family HMM PF04717 match to protein family HMM TIGR01644 YP_002297371.1 identified by match to protein family HMM PF04965 YP_002297372.1 identified by match to protein family HMM PF04865 YP_002297373.1 identified by Glimmer2 putative YP_002297374.1 identified by Glimmer2 putative YP_002297378.1 [Synonyms] Rhodanese-like protein YP_002297379.1 PF07973 YP_002297380.1 identified by match to protein family HMM PF00078 YP_002297382.1 identified by Glimmer2 putative YP_002297383.1 identified by Glimmer2 putative YP_002297385.1 PF01135 YP_002297387.1 Also called outer membrane efflux protein; identified by match to protein family HMM PF01502 YP_002297388.1 identified by match to protein family HMM PF01053 match to protein family HMM PF01212 match to protein family HMM TIGR01324 YP_002297389.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_002297390.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_002297391.1 identified by match to protein family HMM PF07973 YP_002297392.1 identified by match to protein family HMM PF00293 match to protein family HMM TIGR00052 YP_002297393.1 identified by match to protein family HMM PF02566 YP_002297394.1 Also called penicillin-binding protein 5.Gene symbol synonym PFv YP_002297395.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_002297396.1 TIGR00398 YP_002297397.1 identified by match to protein family HMM PF00293 YP_002297398.1 identified by match to protein family HMM PF01135 YP_002297399.1 Contains PF02518 identified by match to protein family HMM PF00581 YP_002297400.1 identified by match to protein family HMM PF02321 match to protein family HMM TIGR01844 YP_002297402.1 identified by Glimmer2 putative YP_002297403.1 identified by match to protein family HMM PF00920 match to protein family HMM TIGR00110 YP_002297404.1 identified by match to protein family HMM PF02698 YP_002297405.1 identified by match to protein family HMM TIGR02283 YP_002297406.1 Also called methyl-accepting chemotaxis receptor YP_002297407.1 [contains] EAL domain, region 9-239; diguanylate cyclase (GGDEF) domain, region 401-562; identified by match to protein family HMM PF00144 match to protein family HMM PF00768 match to protein family HMM PF07943 YP_002297408.1 PF00930Characterized gene (PMID: 9010758) YP_002297409.1 identified by match to protein family HMM PF01406 match to protein family HMM TIGR00398 YP_002297410.1 identified by match to protein family HMM PF01026 match to protein family HMM TIGR00010 YP_002297411.1 Gene symbol synonyms cir feuA; identified by match to protein family HMM PF00753 YP_002297412.1 identified by match to protein family HMM PF00072 match to protein family HMM PF00512 match to protein family HMM PF02518 YP_002297414.1 identified by match to protein family HMM PF00593 match to protein family HMM PF07715 match to protein family HMM TIGR01778 YP_002297416.1 Represses a number of genes involved in the response to DNA damage YP_002297417.1 Also called ComEC YP_002297418.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_002297419.1 both chromosomal and plasmid encoded identified by match to protein family HMM PF00015 match to protein family HMM PF00672 YP_002297420.1 identified by match to protein family HMM PF00563 match to protein family HMM PF00990 match to protein family HMM TIGR00254 YP_002297421.1 Gene symbol synonym pgsB; identified by match to protein family HMM PF00326 match to protein family HMM PF00930 match to protein family HMM PF07676 YP_002297422.1 homology to uncharacterized Phosphatidate cytidyltransferasesresides near Lipid-A biosynthesis proteins may have function related to Biosynthesis and degradation of murein sacculus and peptidoglycan; identified by match to protein family HMM PF01609 YP_002297423.1 identified by match to protein family HMM PF01494 match to protein family HMM TIGR01988 YP_002297424.1 resides in the region of lipid A biosynthesis proteins identified by match to protein family HMM PF00593 match to protein family HMM PF07715 YP_002297425.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_002297426.1 Alternate names; Gene symbol synonym: skp; identified by match to protein family HMM PF00126 match to protein family HMM PF03466 YP_002297427.1 identified by match to protein family HMM PF00361 match to protein family HMM TIGR01409 YP_002297428.1 TIGR00054 TIGR role Has a good score above the trusted cutoff; SP|Q8UFL7| Hypothetical zinc metalloprotease Atu1380 YP_002297429.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_002297430.1 identified by match to protein family HMM PF03772 match to protein family HMM TIGR00360 YP_002297431.1 Gene symbol synonyms ispU, rth.Also called undecaprenyl diphosphate synt Hase; identified by match to protein family HMM PF00749 match to protein family HMM TIGR00464 YP_002297432.1 PF01765 TIGR00496: ribosome recycling factor; With a good score above the trusted cutoff and characterized homologs; identified by match to protein family HMM PF00285 match to protein family HMM TIGR01798 YP_002297433.1 Catalyzes the phosphorylation of UMP to UDP YP_002297434.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_002297435.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_002297436.1 identified by Glimmer2 putative YP_002297437.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_002297438.1 identified by match to protein family HMM PF00132 match to protein family HMM PF04613 match to protein family HMM TIGR01853 YP_002297439.1 identified by match to protein family HMM PF02163 match to protein family HMM TIGR00054 YP_002297440.1 identified by match to protein family HMM PF02670 match to protein family HMM TIGR00243 YP_002297441.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_002297442.1 identified by Glimmer2 putative YP_002297443.1 identified by match to protein family HMM PF01765 match to protein family HMM TIGR00496 YP_002297444.1 identified by match to protein family HMM PF00696 match to protein family HMM TIGR02075 YP_002297445.1 identified by match to protein family HMM PF00627 match to protein family HMM PF00889 match to protein family HMM TIGR00116 YP_002297446.1 identified by match to protein family HMM PF00318 match to protein family HMM TIGR01011 YP_002297448.1 [Synonyms] DL-methylmalonyl-CoA racemase Gene name identified by match to protein family HMM PF01336 match to protein family HMM PF02811 match to protein family HMM PF07733 match to protein family HMM TIGR00594 YP_002297449.1 identified by match to protein family HMM PF00892 YP_002297452.1 Catalyzes the transfer of electrons from NADH to quinone YP_002297453.1 [Synonyms] NADH dehydrogenase I, chain M identified by match to protein family HMM PF02687 match to protein family HMM TIGR02212 YP_002297454.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_002297455.1 [synonyms] NADH dehydrogenase I, chain K YP_002297456.1 [Synonyms] NADH dehydrogenase I, chain J identified by match to protein family HMM PF04140 YP_002297457.1 Catalyzes the transfer of electrons from NADH to quinone YP_002297458.1 [Synonyms] NADH dehydrogenase I chain H identified by match to protein family HMM PF00860 YP_002297459.1 Catalyzes the transfer of electrons from NADH to quinone YP_002297460.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase YP_002297461.1 [Synonyms] NADH dehydrogenase I, chain E identified by match to protein family HMM PF00903 YP_002297462.1 [Synonyms] NADH dehydrogenase I, chain D identified by match to protein family HMM PF00753 match to protein family HMM PF07521 YP_002297463.1 Catalyzes the transfer of electrons from NADH to quinone YP_002297464.1 [Synonyms] NADH dehydrogenase I, chain B identified by match to protein family HMM PF02237 match to protein family HMM PF03099 match to protein family HMM TIGR00121 YP_002297465.1 [Synonyms] NADH dehydrogenase I, chain A identified by match to protein family HMM PF00361 match to protein family HMM TIGR01770 YP_002297466.1 identified by Glimmer2 putative YP_002297467.1 identified by match to protein family HMM PF00361 match to protein family HMM PF00662 match to protein family HMM TIGR01974 YP_002297468.1 TIGR00763 PF02190: ATP-dependent protease La (LON) domain; identified by match to protein family HMM PF00420 YP_002297469.1 identified by Glimmer2 putative YP_002297470.1 binds and unfolds substrates as part of the ClpXP protease YP_002297471.1 PF00574 TIGR00493: ATP-dependent Clp protease, proteolytic subunit ClpP; identified by match to protein family HMM PF00146 YP_002297472.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_002297473.1 identified by match to protein family HMM PF01512 match to protein family HMM TIGR01959 YP_002297474.1 identified by Glimmer2 putative YP_002297475.1 identified by match to protein family HMM PF00346 match to protein family HMM TIGR01962 YP_002297476.1 identified by match to protein family HMM PF00329 match to protein family HMM TIGR01961 YP_002297477.1 identified by match to protein family HMM PF01058 match to protein family HMM TIGR01957 YP_002297478.1 identified by match to protein family HMM PF00507 YP_002297480.1 identified by Glimmer2 putative YP_002297481.1 identified by Glimmer2 putative YP_002297483.1 identified by match to protein family HMM PF00004 match to protein family HMM PF06689 match to protein family HMM PF07724 match to protein family HMM TIGR00382 YP_002297484.1 identified by match to protein family HMM PF00574 match to protein family HMM TIGR00493 YP_002297485.1 identified by match to protein family HMM PF00254 match to protein family HMM PF05697 match to protein family HMM PF05698 match to protein family HMM TIGR00115 YP_002297486.1 catalyzes branch migration in Holliday junction intermediates YP_002297487.1 identified by match to protein family HMM PF01256 match to protein family HMM PF03853 match to protein family HMM TIGR00196 match to protein family HMM TIGR00197 YP_002297489.1 identified by match to protein family HMM PF05982 YP_002297490.1 identified by match to protein family HMM PF00543 YP_002297491.1 Part of the C ring in the flagellar basal body of many bacteria along With fliG and fliM.Orgainization of fliN in the C ring, see JRotor YP_002297492.1 identified by Glimmer2 putative YP_002297493.1 appears to have same function with Nitrogen fixation protein fixS,also part of the fix GHIS cluster YP_002297494.1 identified by match to protein family HMM PF01323 YP_002297495.1 identified by match to protein family HMM PF00270 match to protein family HMM PF00271 match to protein family HMM PF02559 match to protein family HMM PF03461 match to protein family HMM PF04851 match to protein family HMM TIGR00580 YP_002297496.1 identified by match to protein family HMM PF03937 YP_002297497.1 identified by match to protein family HMM PF01609 YP_002297498.1 cytochrome c oxidase, identified by match to protein family HMM PF01336 YP_002297499.1 identified by match to protein family HMM PF00270 match to protein family HMM PF00271 YP_002297500.1 CcoN; FixN YP_002297501.1 identified by match to protein family HMM PF00195 match to protein family HMM PF02797 YP_002297502.1 identified by match to protein family HMM PF04140 YP_002297503.1 identified by match to protein family HMM PF00027 match to protein family HMM PF00325 YP_002297504.1 identified by match to protein family HMM PF01052 match to protein family HMM TIGR02480 YP_002297506.1 identified by match to protein family HMM PF00122 match to protein family HMM PF00403 match to protein family HMM PF00702 match to protein family HMM TIGR01494 match to protein family HMM TIGR01511 match to protein family HMM TIGR01525 YP_002297508.1 identified by match to protein family HMM PF00037 match to protein family HMM TIGR02745 YP_002297509.1 identified by match to protein family HMM PF00034 match to protein family HMM TIGR00782 YP_002297510.1 identified by match to protein family HMM PF05545 YP_002297511.1 identified by match to protein family HMM PF02433 match to protein family HMM TIGR00781 YP_002297512.1 identified by match to protein family HMM PF00115 match to protein family HMM TIGR00780 YP_002297513.1 identified by Glimmer2 putative YP_002297514.1 identified by Glimmer2 putative YP_002297515.1 identified by Glimmer2 putative YP_002297516.1 identified by Glimmer2 putative YP_002297518.1 identified by Glimmer2 putative YP_002297519.1 identified by Glimmer2 putative YP_002297520.1 identified by Glimmer2 putative YP_002297522.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_002297523.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_002297524.1 identified by match to protein family HMM PF05136 match to protein family HMM TIGR01539 YP_002297525.1 identified by Glimmer2 putative YP_002297526.1 [synonyms] (Poly(3-hydroxybutyrate) polymerase) (PHB polymerase) (PHB synt Hase) (Poly(3-hydroxyalkanoate) polymerase) YP_002297529.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_002297532.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_002297533.1 identified by Glimmer2 putative YP_002297535.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002297536.1 identified by match to protein family HMM PF03320 match to protein family HMM TIGR00330 YP_002297537.1 identified by match to protein family HMM PF00742 match to protein family HMM PF01408 match to protein family HMM PF01842 match to protein family HMM PF03447 YP_002297538.1 identified by match to protein family HMM PF00155 YP_002297540.1 identified by match to protein family HMM PF00561 match to protein family HMM PF07167 match to protein family HMM TIGR01838 YP_002297541.1 identified by Glimmer2 putative YP_002297542.1 identified by match to protein family HMM PF01724 YP_002297543.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_002297544.1 [synonyms] Beta-ketoacyl-ACP synt Hase III identified by match to protein family HMM PF00583 YP_002297545.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_002297546.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_002297549.1 identified by match to protein family HMM PF03061 match to protein family HMM TIGR00369 YP_002297550.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_002297551.1 identified by match to protein family HMM PF02629 YP_002297552.1 identified by match to protein family HMM PF01041 match to protein family HMM PF01053 match to protein family HMM PF01212 match to protein family HMM TIGR01326 YP_002297553.1 Also called N utilization substance protein B homolog identified by match to protein family HMM PF07690 YP_002297554.1 [synonyms] DMRL synt Hase 1 Lumazine synt Hase 1 Riboflavin synt Hase 1 beta subunit identified by match to protein family HMM PF03091 YP_002297555.1 [includes] GTP cyclohydrolase-II, 3,4-dihydroxy-2-butanone 4-phosphate synt Hase YP_002297556.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_002297557.1 [includes] Diaminohydroxyphosphoribosylaminopyrimidi ne deaminase, 5-amino-6-(5-phosphoribosylamino)uracil reductase identified by match to protein family HMM PF00376 YP_002297558.1 identified by match to protein family HMM PF00216 match to protein family HMM TIGR00987 YP_002297559.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_002297560.1 identified by match to protein family HMM PF02504 match to protein family HMM TIGR00182 YP_002297561.1 identified by match to protein family HMM PF01783 match to protein family HMM TIGR01031 YP_002297563.1 Gene symbol synonym identified by match to protein family HMM PF03981 YP_002297564.1 identified by match to protein family HMM PF04355 YP_002297565.1 identified by match to protein family HMM PF03030 match to protein family HMM TIGR01104 YP_002297568.1 identified by match to protein family HMM PF02769 match to protein family HMM TIGR01379 YP_002297569.1 identified by match to protein family HMM PF01029 match to protein family HMM TIGR01951 YP_002297570.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_002297571.1 identified by Glimmer2 putative YP_002297572.1 [contains] alpha YP_002297573.1 [contains] alpha YP_002297574.1 identified by match to protein family HMM PF03477 match to protein family HMM TIGR00244 YP_002297575.1 identified by match to protein family HMM PF00464 match to protein family HMM PF01212 YP_002297576.1 Also called penicillin amidase; identified by match to protein family HMM PF05443 YP_002297577.1 [synonyms] NADH:FMN oxidoreductase identified by match to protein family HMM PF02502 match to protein family HMM TIGR00689 match to protein family HMM TIGR01120 YP_002297578.1 Stator protein converts proton energy into torque integral to plasma membrane YP_002297579.1 identified by match to protein family HMM PF01047 YP_002297580.1 identified by match to protein family HMM PF03446 match to protein family HMM TIGR01692 YP_002297581.1 PF04377 PF04376: Arginine-tRNA-protein transferase, N terminus; identified by match to protein family HMM PF00378 YP_002297582.1 identified by match to protein family HMM PF00441 match to protein family HMM PF02770 match to protein family HMM PF02771 match to protein family HMM PF08028 YP_002297584.1 identified by match to protein family HMM PF00781 YP_002297585.1 identified by match to protein family HMM PF00149 YP_002297586.1 identified by Glimmer2 putative YP_002297588.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002297589.1 identified by match to protein family HMM PF00561 YP_002297590.1 identified by Glimmer2 putative YP_002297591.1 identified by match to protein family HMM PF00171 YP_002297592.1 identified by Glimmer2 putative YP_002297593.1 identified by match to protein family HMM PF01804 YP_002297594.1 identified by match to protein family HMM PF00036 match to protein family HMM PF00691 YP_002297595.1 identified by match to protein family HMM PF04169 match to protein family HMM PF04174 YP_002297596.1 identified by match to protein family HMM PF04168 YP_002297597.1 identified by Glimmer2 putative YP_002297598.1 identified by match to protein family HMM TIGR01409 YP_002297599.1 identified by match to protein family HMM PF03480 YP_002297600.1 identified by match to protein family HMM PF00034 YP_002297601.1 identified by match to protein family HMM PF00072 YP_002297602.1 PF00160This gene in a cluster of genes from the same function YP_002297603.1 PF00160These genes are in a cluster of homologs genes from the same family; identified by match to protein family HMM PF03061 YP_002297604.1 Gene symbol synonym flaC.Rod protein transmission shaft periplasmic space; identified by match to protein family HMM PF00204 match to protein family HMM PF00986 match to protein family HMM PF01751 match to protein family HMM PF02518 match to protein family HMM TIGR01055 YP_002297605.1 makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella YP_002297606.1 required for the assembly of the flagellar basal body P-ring; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum YP_002297607.1 Gene symbol synonym flbN.L-ring protein part of bushing lipoprotein outer membrane identified by match to protein family HMM PF00561 YP_002297608.1 Also called DnaK suppressor protein YP_002297609.1 regulator of the sigma 54 transcriptional activator FlbD; represses FlbD when the class II flagellar structure is absent and activates FlbD when the structure is present YP_002297610.1 Gene symbol synonym flaP.P-ring protein part of bushing internal disulfide bridge periplasmic space; identified by match to protein family HMM PF01037 YP_002297611.1 identified by match to protein family HMM PF03968 match to protein family HMM PF04453 YP_002297612.1 identified by Glimmer2 putative YP_002297613.1 identified by Glimmer2 putative YP_002297614.1 Hook-length control protein cell exterior; identified by match to protein family HMM PF00465 YP_002297615.1 gene symbol synonyms fla FIV, flaV.Part of the filament cap in flagella; Also called hook-capping protein; Located on cell exterior; identified by match to protein family HMM PF07027 YP_002297618.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_002297619.1 identified by match to protein family HMM PF00160 YP_002297620.1 identified by match to protein family HMM PF00460 YP_002297621.1 identified by match to protein family HMM PF00460 match to protein family HMM PF06429 match to protein family HMM TIGR02488 YP_002297622.1 identified by match to protein family HMM PF03240 match to protein family HMM TIGR01409 YP_002297623.1 identified by match to protein family HMM PF02107 YP_002297624.1 Gene symbol synonym Contains PF00196: transcriptional regulator, LuxR family and PF00072: Response regulator receiver domain; identified by match to protein family HMM PF01258 match to protein family HMM TIGR02420 YP_002297625.1 identified by Glimmer2 putative YP_002297626.1 identified by match to protein family HMM PF02119 YP_002297628.1 identified by Glimmer2 putative YP_002297631.1 [contains]tetratricopeptide repeat identified by Glimmer2 putative YP_002297632.1 hydrogenase 4 Fe-S subunit identified by match to protein family HMM PF06627 YP_002297634.1 identified by match to protein family HMM PF01926 match to protein family HMM TIGR00231 match to protein family HMM TIGR00650 YP_002297638.1 identified by match to protein family HMM PF00196 match to protein family HMM PF04545 YP_002297639.1 identified by match to protein family HMM PF00196 YP_002297640.1 identified by Glimmer2 putative YP_002297641.1 Also called response regulator receiver domain protein YP_002297642.1 identified by Glimmer2 putative YP_002297643.1 identified by Glimmer2 putative YP_002297645.1 identified by match to protein family HMM PF02358 match to protein family HMM TIGR00685 match to protein family HMM TIGR01484 YP_002297646.1 Contains TIGR01730 identified by match to protein family HMM PF01979 match to protein family HMM TIGR00221 YP_002297647.1 identified by match to protein family HMM PF07719 YP_002297648.1 [synonyms] Phosphatidylserine synt Hase identified by match to protein family HMM PF01058 YP_002297649.1 identified by match to protein family HMM PF00346 YP_002297650.1 identified by match to protein family HMM PF00361 YP_002297652.1 identified by match to protein family HMM PF00146 YP_002297653.1 identified by Glimmer2 putative YP_002297654.1 identified by match to protein family HMM PF00575 YP_002297655.1 identified by match to protein family HMM PF01112 YP_002297657.1 identified by match to protein family HMM PF00072 YP_002297659.1 Gene symbol synonym YP_002297660.1 GB identified by match to protein family HMM PF01209 YP_002297661.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_002297662.1 identified by match to protein family HMM PF03551 YP_002297663.1 identified by match to protein family HMM PF00873 YP_002297664.1 identified by match to protein family HMM PF01066 match to protein family HMM TIGR00473 YP_002297665.1 identified by Glimmer2 putative YP_002297666.1 identified by match to protein family HMM PF00072 YP_002297670.1 TIGR00493 PF00574: Clp protease; identified by match to protein family HMM PF03631 match to protein family HMM TIGR00765 YP_002297671.1 identified by match to protein family HMM TIGR02122 YP_002297672.1 identified by match to protein family HMM PF00271 match to protein family HMM PF04408 YP_002297673.1 -Synonym Agmatine iminohydrolase YP_002297674.1 Part of the pot operon; identified by match to protein family HMM PF02470 YP_002297675.1 Part of the pot operon; identified by match to protein family HMM PF00005 YP_002297676.1 Contains TIGR01187 identified by match to protein family HMM PF02405 match to protein family HMM TIGR00056 YP_002297677.1 identified by match to protein family HMM PF00528 YP_002297678.1 identified by match to protein family HMM PF00156 match to protein family HMM TIGR01090 YP_002297679.1 identified by Glimmer2 putative YP_002297680.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002297681.1 Contains PF02518 YP_002297682.1 identified by match to protein family HMM PF00106 match to protein family HMM PF07993 YP_002297683.1 [synonyms] Gamma-Glu-Put synthetase Glutamate--putrescine ligase identified by match to protein family HMM PF02633 YP_002297684.1 identified by Glimmer2 putative YP_002297685.1 identified by match to protein family HMM PF00171 YP_002297686.1 synonym identified by match to protein family HMM PF00574 YP_002297687.1 identified by match to protein family HMM PF00903 YP_002297688.1 identified by Glimmer2 putative YP_002297689.1 identified by Glimmer2 putative YP_002297690.1 identified by match to protein family HMM PF00528 YP_002297691.1 identified by match to protein family HMM PF00528 YP_002297692.1 identified by match to protein family HMM PF00005 match to protein family HMM PF03459 match to protein family HMM TIGR01187 YP_002297693.1 identified by match to protein family HMM PF01547 YP_002297694.1 identified by match to protein family HMM PF00202 YP_002297695.1 identified by Glimmer2 putative YP_002297696.1 identified by match to protein family HMM PF00378 YP_002297697.1 identified by match to protein family HMM PF00072 match to protein family HMM PF00512 match to protein family HMM PF02518 YP_002297698.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002297699.1 identified by match to protein family HMM PF00120 YP_002297700.1 Contains TIGR00229 YP_002297701.1 identified by match to protein family HMM PF01266 YP_002297702.1 identified by match to protein family HMM PF00202 YP_002297706.1 identified by match to protein family HMM PF07568 YP_002297707.1 identified by match to protein family HMM PF01073 match to protein family HMM PF01370 match to protein family HMM PF02719 match to protein family HMM PF04321 match to protein family HMM PF07993 YP_002297708.1 identified by match to protein family HMM PF04290 YP_002297709.1 Contains EAL domain and GGDEF domain; identified by match to protein family HMM PF06808 match to protein family HMM TIGR00786 YP_002297710.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_002297712.1 identified by match to protein family HMM PF00205 match to protein family HMM PF02775 match to protein family HMM PF02776 YP_002297713.1 [synonyms] Holo-ACP synt Hase identified by match to protein family HMM PF00043 match to protein family HMM PF02798 YP_002297714.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_002297715.1 identified by match to protein family HMM PF02565 match to protein family HMM TIGR00613 YP_002297716.1 identified by match to protein family HMM TIGR00229 YP_002297718.1 [synonyms] 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase identified by match to protein family HMM PF02316 YP_002297722.1 IGR00086 PF01668: SmpB protein YP_002297723.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_002297725.1 identified by Glimmer2 putative YP_002297726.1 identified by match to protein family HMM PF00563 match to protein family HMM PF00990 match to protein family HMM TIGR00254 YP_002297727.1 identified by match to protein family HMM PF01926 match to protein family HMM PF07650 match to protein family HMM TIGR00231 match to protein family HMM TIGR00436 YP_002297728.1 identified by match to protein family HMM PF00035 match to protein family HMM PF00636 match to protein family HMM TIGR02191 YP_002297729.1 identified by match to protein family HMM PF00717 match to protein family HMM TIGR02227 YP_002297730.1 identified by match to protein family HMM PF01648 match to protein family HMM TIGR00516 match to protein family HMM TIGR00556 YP_002297731.1 identified by match to protein family HMM PF03740 match to protein family HMM TIGR00559 YP_002297732.1 identified by Glimmer2 putative YP_002297733.1 PF01425 TIGR00132: glutamyl-tRNA(Gln) and YP_002297734.1 TIGR00135 PF02686: glutamyl-tRNA(Gln) amidotransferase, C subunit With a good score above the trusted cutoff and characterized homologs; identified by match to protein family HMM PF01192 match to protein family HMM TIGR00690 YP_002297735.1 identified by match to protein family HMM PF01288 match to protein family HMM TIGR01498 YP_002297736.1 identified by match to protein family HMM PF01936 YP_002297737.1 identified by Glimmer2 putative YP_002297738.1 identified by match to protein family HMM PF06282 YP_002297739.1 [synonyms] Dienelactone hydrolase identified by match to protein family HMM PF01668 match to protein family HMM TIGR00086 YP_002297740.1 identified by match to protein family HMM PF00701 match to protein family HMM TIGR00674 YP_002297741.1 identified by match to protein family HMM PF01464 YP_002297742.1 Aspartate carbamoyltransferase 44 kDa Non-catalytic chainthis protein is inactive but is required as a non-catalytic subunit of aspartate transcarbamoylase (ATCase); (by similarity) YP_002297744.1 Gene symbol synonym smf in E; coli YP_002297745.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_002297746.1 identified by match to protein family HMM PF01381 YP_002297747.1 TIGR00225Microbiology; 1997 Apr143 ( Pt 4):1221-33; (For characterization); identified by match to protein family HMM PF00324 YP_002297750.1 identified by match to protein family HMM PF01425 match to protein family HMM TIGR00132 YP_002297751.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_002297752.1 identified by match to protein family HMM PF03652 match to protein family HMM TIGR00250 YP_002297753.1 identified by match to protein family HMM PF03547 YP_002297755.1 identified by match to protein family HMM PF02515 YP_002297756.1 TIGR00459 PF00152: tRNA synthetases class II (D, K and N) With a good score above the trusted cutoff and characterized homologs; identified by match to protein family HMM PF01738 YP_002297758.1 identified by Glimmer2 putative YP_002297759.1 identified by match to protein family HMM PF01979 match to protein family HMM PF07969 match to protein family HMM TIGR00857 YP_002297760.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_002297761.1 identified by match to protein family HMM PF02481 match to protein family HMM TIGR00732 YP_002297762.1 identified by match to protein family HMM PF01131 match to protein family HMM PF01396 match to protein family HMM PF01751 match to protein family HMM TIGR01051 YP_002297764.1 identified by match to protein family HMM PF00575 match to protein family HMM PF00773 match to protein family HMM TIGR00358 match to protein family HMM TIGR02063 YP_002297765.1 identified by match to protein family HMM PF00595 match to protein family HMM PF03572 match to protein family HMM TIGR00225 YP_002297766.1 identified by match to protein family HMM PF00471 match to protein family HMM TIGR01023 YP_002297767.1 Phosphoribosyl-aminoimidazole synthetase identified by match to protein family HMM PF00072 match to protein family HMM PF00990 match to protein family HMM TIGR00254 YP_002297768.1 GARTGAR transformylase 5'-phosphoribosylglycinamide transformylase identified by match to protein family HMM PF00072 YP_002297769.1 identified by Glimmer2 putative YP_002297770.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_002297771.1 identified by match to protein family HMM PF01047 YP_002297773.1 identified by match to protein family HMM PF00990 match to protein family HMM TIGR00254 YP_002297774.1 identified by match to protein family HMM PF00152 match to protein family HMM PF01336 match to protein family HMM PF02938 match to protein family HMM TIGR00459 YP_002297775.1 identified by match to protein family HMM PF00570 match to protein family HMM PF01612 match to protein family HMM TIGR01388 YP_002297776.1 Essential for recycling GMP and indirectly, cGMP YP_002297777.1 identified by match to protein family HMM PF02541 YP_002297778.1 [synonyms] 4-(phosphohydroxy)-L-threonine dehydrogenase identified by match to protein family HMM PF02503 YP_002297779.1 PF00639Several uncharacterized homologs from the same family; Found in the same cluster With putative proteins from the same family YP_002297780.1 identified by match to protein family HMM PF01928 YP_002297782.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_002297783.1 identified by match to protein family HMM PF01066 YP_002297785.1 identified by match to protein family HMM PF00586 match to protein family HMM PF02769 match to protein family HMM TIGR00878 YP_002297786.1 identified by match to protein family HMM PF00551 match to protein family HMM TIGR00639 YP_002297787.1 also high similarity to nodG gene of Rhizobium meliloti.gene cluster context matches fatty acid biosynthetic gene cluster of E.coli YP_002297788.1 identified by match to protein family HMM PF00334 YP_002297789.1 identified by match to protein family HMM PF00005 YP_002297791.1 identified by match to protein family HMM PF00106 YP_002297792.1 [synonyms] Cyclopropane fatty acid synt Hase CFA synt Hase identified by match to protein family HMM PF01609 YP_002297793.1 identified by match to protein family HMM PF03755 match to protein family HMM TIGR00255 YP_002297794.1 identified by match to protein family HMM PF00625 YP_002297795.1 identified by match to protein family HMM PF00398 match to protein family HMM TIGR00755 YP_002297796.1 identified by match to protein family HMM PF04166 match to protein family HMM TIGR00557 YP_002297797.1 identified by Glimmer2 putative YP_002297798.1 identified by match to protein family HMM PF03739 YP_002297799.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_002297800.1 identified by match to protein family HMM PF00883 match to protein family HMM PF02789 YP_002297801.1 identified by match to protein family HMM PF04364 YP_002297802.1 identified by match to protein family HMM PF02618 match to protein family HMM TIGR00247 YP_002297803.1 identified by Glimmer2 putative YP_002297804.1 identified by match to protein family HMM PF00550 match to protein family HMM TIGR00517 YP_002297805.1 identified by match to protein family HMM PF00106 match to protein family HMM PF01370 match to protein family HMM TIGR01830 YP_002297806.1 identified by match to protein family HMM PF00698 match to protein family HMM TIGR00128 YP_002297807.1 identified by Glimmer2 putative YP_002297808.1 identified by match to protein family HMM PF01084 match to protein family HMM TIGR00165 YP_002297809.1 identified by match to protein family HMM PF01281 match to protein family HMM PF03948 match to protein family HMM TIGR00158 YP_002297810.1 Also called bifunctional protein glmU N-acetylglucosamine-1-phosphate uridyltransferaseglucosamine-1-phosphate N-acetyltransferase; identified by match to protein family HMM PF02353 match to protein family HMM PF05175 YP_002297811.1 SynonymPGP identified by match to protein family HMM PF00772 match to protein family HMM PF03796 match to protein family HMM TIGR00665 YP_002297812.1 identified by match to protein family HMM PF00842 match to protein family HMM PF01168 match to protein family HMM TIGR00492 YP_002297813.1 identified by match to protein family HMM PF02405 match to protein family HMM TIGR00056 YP_002297814.1 Gene symbol synonym tag; identified by match to protein family HMM PF00005 YP_002297817.1 identified by match to protein family HMM TIGR00416 YP_002297818.1 identified by Glimmer2 putative YP_002297819.1 identified by match to protein family HMM PF00156 match to protein family HMM PF00310 match to protein family HMM TIGR01134 YP_002297820.1 identified by match to protein family HMM PF00106 YP_002297821.1 TIGR00020 With many homologs of the same identity some of which are characterized YP_002297822.1 identified by match to protein family HMM PF00732 match to protein family HMM PF05199 YP_002297823.1 TIGR02074 PF00905: Penicillin binding protein transpeptidase domain; Penicillin-insensitive transglycosylase (EC 2.4.2.-)(Peptidoglycan TGase) Penicillin-sensitive transpeptidase(EC 3.4.-.-)(DD-transpeptidase); identified by match to protein family HMM PF00070 match to protein family HMM PF02852 match to protein family HMM PF07992 match to protein family HMM TIGR01424 YP_002297824.1 identified by match to protein family HMM PF00583 YP_002297825.1 identified by Glimmer2 putative YP_002297826.1 identified by match to protein family HMM PF00072 YP_002297827.1 identified by match to protein family HMM PF00171 match to protein family HMM TIGR01780 YP_002297828.1 identified by match to protein family HMM PF00132 match to protein family HMM PF00483 match to protein family HMM PF01128 YP_002297829.1 [contains] 2Fe-2S iron-sulfur cluster binding domain identified by match to protein family HMM PF00702 match to protein family HMM TIGR01449 match to protein family HMM TIGR01509 match to protein family HMM TIGR01549 YP_002297830.1 TIGR00714But other uncharacterized homologs identified as Co-chaperone protein hscB YP_002297831.1 identified by Glimmer2 putative YP_002297833.1 identified by match to protein family HMM PF00565 YP_002297834.1 identified by match to protein family HMM PF02586 YP_002297835.1 identified by match to protein family HMM PF00459 match to protein family HMM TIGR01331 YP_002297836.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_002297837.1 TIGR00234 PF00579: tRNA synthetases class I (W and Y) With a good score above the trusted cutoff and characterized homologs; identified by match to protein family HMM PF04305 YP_002297838.1 identified by match to protein family HMM PF05960 YP_002297839.1 identified by match to protein family HMM PF00472 match to protein family HMM PF03462 match to protein family HMM TIGR00020 YP_002297840.1 identified by match to protein family HMM PF03922 YP_002297841.1 identified by Glimmer2 putative YP_002297842.1 identified by Glimmer2 putative YP_002297843.1 Conatins two domains ParA & ArsA YP_002297844.1 identified by match to protein family HMM PF00575 match to protein family HMM TIGR00757 YP_002297846.1 identified by match to protein family HMM PF03070 YP_002297847.1 identified by match to protein family HMM PF00111 YP_002297849.1 identified by match to protein family HMM PF00266 match to protein family HMM PF01212 YP_002297850.1 identified by match to protein family HMM PF02082 match to protein family HMM TIGR00738 YP_002297851.1 identified by match to protein family HMM PF00132 match to protein family HMM TIGR01172 YP_002297853.1 Contains Sigma-70 region 2 and Sigma-70 region 4, see PF04542 YP_002297854.1 identified by match to protein family HMM PF03702 YP_002297855.1 identified by match to protein family HMM PF00579 match to protein family HMM TIGR00234 YP_002297857.1 Contains TIGR01730 identified by match to protein family HMM PF03710 YP_002297858.1 identified by match to protein family HMM PF00578 YP_002297861.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_002297862.1 identified by match to protein family HMM PF01300 match to protein family HMM PF03481 match to protein family HMM TIGR00057 YP_002297863.1 identified by match to protein family HMM PF01565 match to protein family HMM PF02913 YP_002297864.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_002297865.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_002297867.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002297868.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_002297869.1 identified by Glimmer2 putative YP_002297870.1 [contains] Cupin domain identified by match to protein family HMM PF04542 match to protein family HMM PF04545 match to protein family HMM TIGR02937 YP_002297871.1 Synonym Galactowaldenase, wbfT identified by match to protein family HMM PF02687 YP_002297872.1 identified by match to protein family HMM PF01464 YP_002297873.1 identified by match to protein family HMM PF00529 match to protein family HMM TIGR01730 YP_002297874.1 identified by match to protein family HMM PF00005 YP_002297875.1 Gene symbol synonym waaF; identified by match to protein family HMM PF03884 YP_002297877.1 identified by match to protein family HMM PF02545 match to protein family HMM TIGR00172 YP_002297878.1 identified by match to protein family HMM PF00575 match to protein family HMM PF01176 match to protein family HMM TIGR00008 YP_002297879.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002297880.1 PF02092 TIGR00211: glycyl-tRNA synthetase, beta subunit; With a good score above the trusted cutoff and characterized homologs; identified by match to protein family HMM PF06793 YP_002297881.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002297882.1 identified by match to protein family HMM PF01634 match to protein family HMM TIGR00070 YP_002297883.1 PF04389 PF01546: Peptidase family M20 YP_002297884.1 PF01343 identified by match to protein family HMM PF00275 match to protein family HMM TIGR01072 YP_002297885.1 identified by match to protein family HMM TIGR02274 YP_002297887.1 identified by Glimmer2 putative YP_002297888.1 [synonyms] Octaprenyl pyrophosphate synthetase identified by match to protein family HMM PF07883 YP_002297889.1 identified by Glimmer2 putative YP_002297890.1 identified by Glimmer2 putative YP_002297891.1 identified by match to protein family HMM PF04932 YP_002297892.1 identified by match to protein family HMM PF05036 YP_002297893.1 identified by match to protein family HMM PF01075 YP_002297894.1 [synonyms] Nicotine deamidase identified by match to protein family HMM PF01571 YP_002297895.1 identified by match to protein family HMM PF00672 YP_002297896.1 identified by Glimmer2 putative YP_002297897.1 identified by match to protein family HMM PF00391 match to protein family HMM PF01326 match to protein family HMM PF02896 match to protein family HMM TIGR01828 YP_002297898.1 identified by match to protein family HMM PF02092 match to protein family HMM PF05746 match to protein family HMM TIGR00211 YP_002297899.1 identified by match to protein family HMM PF02091 match to protein family HMM TIGR00388 YP_002297901.1 identified by match to protein family HMM PF01546 match to protein family HMM PF04389 YP_002297902.1 PF07724 PF02861: Clp amino terminal domain; PF07728: ATPase family associated With various cellular activities (AAA); SP:P05444: ClpA homolog protein; identified by match to protein family HMM PF01343 YP_002297903.1 PF02617Has many uncharacterized homologs; identified by match to protein family HMM PF05175 YP_002297906.1 Also called penicillin-binding protein 5; identified by match to protein family HMM PF00348 YP_002297908.1 SynonymPMM YP_002297909.1 Gene symbol synonym tuaD; identified by match to protein family HMM PF00583 YP_002297910.1 Also called UDP-glucose pyrophosphorylase Alpha-D-glucosyl-1-phosphate uridylyltransferaseUridine diphosphoglucose pyrophosphorylase; Gene symbol synonym exoN, celA YP_002297911.1 PF00226 identified by match to protein family HMM PF00156 YP_002297912.1 identified by match to protein family HMM PF00857 YP_002297913.1 identified by match to protein family HMM PF00383 YP_002297915.1 identified by match to protein family HMM PF00005 YP_002297916.1 contains U PF0028 domain YP_002297917.1 identified by match to protein family HMM PF00083 match to protein family HMM PF07690 YP_002297920.1 identified by match to protein family HMM PF00004 match to protein family HMM PF02861 match to protein family HMM PF07724 match to protein family HMM PF07728 match to protein family HMM TIGR02639 YP_002297921.1 PF00472 With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF02617 YP_002297922.1 identified by Glimmer2 putative YP_002297923.1 identified by Glimmer2 putative YP_002297924.1 identified by Glimmer2 putative YP_002297925.1 identified by match to protein family HMM PF02517 YP_002297926.1 Cpscpecies of closest match: Ashbya goss YP_002297927.1 identified by match to protein family HMM PF00984 match to protein family HMM PF03720 match to protein family HMM PF03721 match to protein family HMM TIGR03026 YP_002297928.1 identified by match to protein family HMM PF00483 match to protein family HMM TIGR01099 YP_002297929.1 identified by match to protein family HMM PF00226 YP_002297931.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_002297932.1 identified by match to protein family HMM PF00072 match to protein family HMM PF00196 match to protein family HMM PF04545 YP_002297934.1 identified by match to protein family HMM PF01734 YP_002297935.1 This protein may be called sigma-32, sigma factor H, heat shock sigma factor, and alternative sigma factor RpoH.Contains PF04542:Sigma-70 region 2 and PF04545:Sigma-70, region 4 YP_002297936.1 identified by match to protein family HMM PF00890 match to protein family HMM PF01266 match to protein family HMM PF03486 match to protein family HMM PF07992 match to protein family HMM TIGR00275 YP_002297937.1 identified by Glimmer2 putative YP_002297938.1 identified by match to protein family HMM PF04365 YP_002297939.1 identified by Glimmer2 putative YP_002297940.1 No HMMs, but Has some uncharacterized homologs identified as transposons YP_002297942.1 identified by Glimmer2 putative YP_002297943.1 identified by match to protein family HMM PF01679 YP_002297944.1 identified by Glimmer2 putative YP_002297945.1 identified by match to protein family HMM PF00953 YP_002297946.1 identified by match to protein family HMM PF00278 match to protein family HMM PF02784 YP_002297947.1 identified by Glimmer2 putative YP_002297948.1 identified by Glimmer2 putative YP_002297949.1 identified by match to protein family HMM PF00709 match to protein family HMM TIGR00184 YP_002297952.1 identified by match to protein family HMM PF00106 match to protein family HMM PF01370 YP_002297953.1 [includes] Enoyl-CoA hydratase 3-hydroxyacyl-CoA dehydrogenase 3-hydroxybutyryl-CoA epimerase identified by match to protein family HMM PF04542 match to protein family HMM PF04545 match to protein family HMM TIGR02392 match to protein family HMM TIGR02937 YP_002297954.1 [synonym] (Fatty oxidation complex beta subunit) YP_002297956.1 Part of the PF01418 identified by match to protein family HMM PF01212 YP_002297957.1 synonymsBE 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase YP_002297958.1 SynonymDisproportionating enzyme D-enzyme YP_002297961.1 involved in type III protein export during flagellum assembly YP_002297962.1 Gene symbol synonym DNA-binding response regulator Contains PF00072: Response regulator receiver domain and PF00486: Transcriptional regulatory protein, C terminal YP_002297963.1 identified by match to protein family HMM PF00487 YP_002297965.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_002297966.1 identified by match to protein family HMM PF03480 match to protein family HMM TIGR01409 YP_002297967.1 identified by match to protein family HMM PF04290 YP_002297968.1 Also called histidine kinase; identified by match to protein family HMM PF06808 match to protein family HMM TIGR00786 YP_002297970.1 identified by match to protein family HMM PF00378 match to protein family HMM PF00725 match to protein family HMM PF02737 YP_002297971.1 identified by match to protein family HMM PF00108 match to protein family HMM PF02803 match to protein family HMM TIGR01930 YP_002297972.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_002297973.1 identified by match to protein family HMM PF01380 match to protein family HMM PF01418 YP_002297974.1 identified by match to protein family HMM PF00128 match to protein family HMM PF02922 match to protein family HMM TIGR01515 YP_002297975.1 identified by match to protein family HMM PF02446 match to protein family HMM TIGR00217 YP_002297978.1 identified by match to protein family HMM PF00006 match to protein family HMM TIGR01026 match to protein family HMM TIGR02545 YP_002297979.1 identified by match to protein family HMM PF00072 match to protein family HMM PF00486 YP_002297980.1 [contains] S PFH domain identified by match to protein family HMM PF00070 match to protein family HMM PF07992 YP_002297981.1 identified by match to protein family HMM PF01739 match to protein family HMM PF03705 YP_002297982.1 identified by match to protein family HMM PF00072 match to protein family HMM PF01339 YP_002297983.1 identified by match to protein family HMM PF00072 YP_002297984.1 identified by Glimmer2 putative YP_002297985.1 thiamine-pyrophosphate requiring enzyme YP_002297987.1 identified by Glimmer2 putative YP_002297989.1 identified by match to protein family HMM PF04055 match to protein family HMM PF06463 match to protein family HMM TIGR02666 YP_002297990.1 Member of the two-component regulatory system torS YP_002297991.1 identified by match to protein family HMM PF05013 YP_002297992.1 Part of the PF01037Gene symbol synonyms: alsB, ihb, livR, oppI; identified by match to protein family HMM PF04952 YP_002297994.1 identified by match to protein family HMM PF05145 YP_002297995.1 identified by match to protein family HMM PF05981 YP_002297996.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_002297997.1 identified by match to protein family HMM PF01145 YP_002297998.1 identified by Glimmer2 putative YP_002297999.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate YP_002298000.1 identified by Glimmer2 putative YP_002298002.1 identified by match to protein family HMM PF02775 match to protein family HMM PF02776 YP_002298003.1 [synonyms] HMP-phosphate kinase HMP-P kinase identified by match to protein family HMM PF00208 match to protein family HMM PF02812 YP_002298004.1 Gene symbol synonym mrsA YP_002298005.1 [synonyms] DHPS Dihydropteroate pyrophosphorylase identified by match to protein family HMM PF01471 YP_002298006.1 Formerly designated cell division protein FtsH; identified by match to protein family HMM PF00072 match to protein family HMM PF01627 YP_002298007.1 TIGR02432 identified by match to protein family HMM PF00072 match to protein family HMM PF00486 YP_002298008.1 [contains] tetratricopeptide repeat identified by match to protein family HMM PF00171 match to protein family HMM PF01619 match to protein family HMM TIGR01238 YP_002298009.1 Gene symbol synonym identified by match to protein family HMM PF01037 YP_002298010.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_002298011.1 Links inner and outer membranes; identified by match to protein family HMM PF03486 YP_002298012.1 identified by match to protein family HMM PF00015 YP_002298013.1 Inner membrane protein; identified by match to protein family HMM PF00389 match to protein family HMM PF01842 match to protein family HMM PF02826 match to protein family HMM TIGR01327 YP_002298014.1 identified by match to protein family HMM PF04342 YP_002298015.1 identified by match to protein family HMM PF00266 match to protein family HMM TIGR01365 YP_002298016.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_002298018.1 identified by match to protein family HMM PF02567 match to protein family HMM TIGR00654 YP_002298019.1 identified by match to protein family HMM PF00583 YP_002298020.1 identified by match to protein family HMM PF00408 match to protein family HMM PF02878 match to protein family HMM PF02879 match to protein family HMM PF02880 match to protein family HMM TIGR01455 YP_002298021.1 identified by Glimmer2 putative YP_002298022.1 identified by Glimmer2 putative YP_002298023.1 identified by match to protein family HMM PF01171 match to protein family HMM TIGR02432 YP_002298024.1 identified by match to protein family HMM PF07719 match to protein family HMM TIGR02795 YP_002298025.1 identified by match to protein family HMM PF04052 match to protein family HMM PF07676 match to protein family HMM TIGR02800 YP_002298026.1 identified by Glimmer2 putative YP_002298028.1 identified by match to protein family HMM PF02472 YP_002298029.1 identified by match to protein family HMM PF01618 match to protein family HMM TIGR02796 YP_002298030.1 identified by match to protein family HMM PF03061 match to protein family HMM TIGR00051 match to protein family HMM TIGR02799 YP_002298031.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate YP_002298032.1 TMP pyrophosphorylase TMP-PPase Thiamine-phosphate synthase identified by match to protein family HMM PF02075 match to protein family HMM TIGR00228 YP_002298033.1 PF00152With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF00633 match to protein family HMM PF01330 match to protein family HMM PF07499 match to protein family HMM TIGR00084 YP_002298034.1 identified by match to protein family HMM PF01709 match to protein family HMM TIGR01033 YP_002298035.1 Also called flagellar motor protein or OmpA family protein; identified by match to protein family HMM PF00149 YP_002298037.1 identified by match to protein family HMM PF05164 YP_002298039.1 TIGR00038 PF01132: Elongation factor P (EF-P); With a good score above the trusted cutoff and characterized homologs YP_002298040.1 Gene symbol synonym Part of the liv operon; identified by match to protein family HMM PF01061 YP_002298041.1 Gene symbol synonym Part of the liv operon; identified by match to protein family HMM PF00005 YP_002298042.1 Part of the liv operon YP_002298043.1 Part of the liv operon; identified by match to protein family HMM PF00456 match to protein family HMM PF02779 match to protein family HMM PF02780 match to protein family HMM TIGR00232 YP_002298044.1 identified by match to protein family HMM PF00044 match to protein family HMM PF02800 match to protein family HMM TIGR01534 YP_002298045.1 Also called methyl-accepting chemotaxis receptor YP_002298046.1 identified by match to protein family HMM PF00326 match to protein family HMM PF07676 YP_002298047.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_002298048.1 identified by match to protein family HMM PF01791 YP_002298049.1 PF00011 Has many homologs identified as 'Heat shock proteins' non of which are characterized; identified by match to protein family HMM PF00152 YP_002298050.1 identified by match to protein family HMM PF02581 match to protein family HMM TIGR00693 YP_002298051.1 Contains Sigma-70 region 2 and Sigma-70 region 4, see PF04542 YP_002298052.1 [Synonyms] Propionyl-CoA synthetase identified by match to protein family HMM PF00691 YP_002298053.1 identified by Glimmer2 putative YP_002298055.1 [synonyms] D-beta-hydroxybutyrate dehydrogenase identified by match to protein family HMM PF00459 YP_002298056.1 identified by match to protein family HMM PF01132 match to protein family HMM PF08207 match to protein family HMM TIGR00038 YP_002298057.1 identified by match to protein family HMM PF02653 YP_002298058.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_002298059.1 AIR carboxylase identified by match to protein family HMM PF00005 YP_002298060.1 identified by match to protein family HMM PF00005 YP_002298061.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_002298062.1 identified by match to protein family HMM PF00015 match to protein family HMM PF00672 match to protein family HMM PF02743 YP_002298063.1 PF05649 PF01431: Peptidase family M13; Peptidase family M13 contains metalloendopeptidases restricted to action on substrates smaller than proteins; identified by match to protein family HMM PF00005 match to protein family HMM PF00664 match to protein family HMM TIGR02204 YP_002298064.1 identified by match to protein family HMM PF01197 match to protein family HMM TIGR00105 YP_002298065.1 [Synonyms] Polyprenyl p-hydroxybenzoate decarboxylase YP_002298066.1 identified by match to protein family HMM PF00011 YP_002298068.1 identified by match to protein family HMM PF04542 match to protein family HMM PF04545 match to protein family HMM TIGR02937 YP_002298069.1 identified by match to protein family HMM PF00501 YP_002298071.1 identified by match to protein family HMM PF01734 YP_002298072.1 identified by match to protein family HMM PF00106 match to protein family HMM TIGR01963 YP_002298073.1 identified by match to protein family HMM PF05170 YP_002298074.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_002298075.1 identified by Glimmer2 putative YP_002298076.1 identified by Glimmer2 putative YP_002298077.1 identified by match to protein family HMM PF04325 YP_002298078.1 identified by match to protein family HMM PF00365 YP_002298079.1 identified by match to protein family HMM TIGR02444 YP_002298080.1 identified by Glimmer2 putative YP_002298082.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002298083.1 identified by match to protein family HMM PF04325 YP_002298084.1 Also called ferritin-like protein and DNA-binding stress protein; identified by match to protein family HMM PF06242 YP_002298085.1 Also called ferritin-like protein and DNA-binding stress protein; identified by match to protein family HMM PF00107 match to protein family HMM TIGR02824 YP_002298088.1 PF00326 YP_002298089.1 synonym identified by match to protein family HMM PF00593 match to protein family HMM PF07715 YP_002298090.1 Synonomous With UvrABC system protein B and Protein uvrB; identified by match to protein family HMM PF00563 YP_002298091.1 identified by Glimmer2 putative YP_002298093.1 identified by Glimmer2 putative YP_002298094.1 Synonomous With UvrABC system protein C and Protein uvrC; Identified by match to protein family HMM PF01987 match to protein family HMM TIGR00266 YP_002298096.1 identified by match to protein family HMM PF01810 match to protein family HMM TIGR01409 YP_002298097.1 [synonyms] MPT synt Hase subunit 1 Molybdopterin synt Hase subunit 1 Molybdenum cofactor biosynthesis protein D Molybdopterin-converting factor small subunit YP_002298098.1 [synonyms] MPT synt Hase subunit 2 Molybdopterin synt Hase subunit 2 Molybdenum cofactor biosynthesis protein E Molybdopterin-converting factor large subunit YP_002298099.1 identified by match to protein family HMM PF00009 match to protein family HMM PF00679 match to protein family HMM PF03764 match to protein family HMM TIGR00231 YP_002298100.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_002298101.1 identified by match to protein family HMM PF00210 YP_002298102.1 Gene symbol synonym identified by match to protein family HMM PF00210 YP_002298103.1 identified by match to protein family HMM PF02798 YP_002298104.1 identified by match to protein family HMM PF00582 YP_002298105.1 identified by match to protein family HMM PF00326 YP_002298106.1 PF04073 With a good score above the trusted cutoff and uncharacterized homologs YP_002298107.1 identified by match to protein family HMM PF00155 YP_002298108.1 identified by match to protein family HMM PF00271 match to protein family HMM PF02151 match to protein family HMM PF04851 match to protein family HMM TIGR00631 YP_002298110.1 Gene symbol synonyms hldD gme; identified by match to protein family HMM PF00106 YP_002298111.1 TIGR00544 YP_002298112.1 identified by match to protein family HMM PF01541 match to protein family HMM PF02151 match to protein family HMM TIGR00194 YP_002298114.1 RPPKPhosphoribosyl pyrophosphate synthetase YP_002298115.1 identified by Glimmer2 putative YP_002298116.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_002298117.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_002298118.1 identified by match to protein family HMM PF00072 match to protein family HMM PF00512 match to protein family HMM PF02518 YP_002298119.1 identified by Glimmer2 putative YP_002298120.1 identified by Glimmer2 putative YP_002298121.1 identified by Glimmer2 putative YP_002298122.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_002298123.1 [Synonyms] Deamido-NAD(+) pyrophosphorylase Deamido-NAD(+) diphosphorylase identified by match to protein family HMM TIGR01841 YP_002298124.1 identified by match to protein family HMM PF00440 YP_002298125.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_002298126.1 identified by match to protein family HMM PF03807 match to protein family HMM TIGR00112 YP_002298128.1 identified by match to protein family HMM PF04380 YP_002298129.1 Also called dolichyl-phosphate-mannose-protein mannosyltransferase; identified by match to protein family HMM PF01073 match to protein family HMM PF01370 match to protein family HMM PF04321 match to protein family HMM TIGR02197 YP_002298130.1 identified by match to protein family HMM PF01790 match to protein family HMM TIGR00544 YP_002298131.1 identified by match to protein family HMM PF02636 YP_002298132.1 identified by match to protein family HMM PF02578 match to protein family HMM TIGR00726 YP_002298134.1 identified by match to protein family HMM PF00156 match to protein family HMM TIGR01251 YP_002298135.1 possibly CRISPR-associated identified by match to protein family HMM PF01386 match to protein family HMM TIGR00731 YP_002298136.1 identified by match to protein family HMM PF01195 match to protein family HMM TIGR00447 YP_002298141.1 identified by match to protein family HMM PF00171 match to protein family HMM TIGR00407 YP_002298142.1 identified by match to protein family HMM PF01467 match to protein family HMM TIGR00482 YP_002298143.1 Contains Sigma-70 region 2 and Sigma-70 region 4, see PF04542 identified by match to protein family HMM PF02410 match to protein family HMM TIGR00090 YP_002298144.1 identified by match to protein family HMM PF02590 YP_002298145.1 Alternate name identified by match to protein family HMM PF00515 match to protein family HMM PF07719 YP_002298146.1 identified by match to protein family HMM PF00535 YP_002298147.1 identified by match to protein family HMM PF07578 YP_002298148.1 [synonyms] 2,4-dienoyl-CoA reductase 2 identified by match to protein family HMM PF02366 YP_002298149.1 identified by match to protein family HMM PF01042 YP_002298150.1 identified by match to protein family HMM PF04339 YP_002298153.1 identified by match to protein family HMM PF00271 match to protein family HMM TIGR02621 YP_002298155.1 identified by match to protein family HMM TIGR02570 YP_002298156.1 identified by match to protein family HMM TIGR02165 YP_002298157.1 [synonyms] (Fatty oxidation complex beta subunit) YP_002298158.1 identified by match to protein family HMM TIGR01573 YP_002298159.1 identified by match to protein family HMM PF04241 YP_002298160.1 identified by match to protein family HMM PF00593 match to protein family HMM PF07660 match to protein family HMM PF07715 YP_002298161.1 identified by match to protein family HMM PF04773 YP_002298162.1 TIGR02414 PF01433: Peptidase family M1; The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins With aminopeptidase activity; identified by match to protein family HMM PF04545 match to protein family HMM TIGR02937 YP_002298163.1 [contains] Appr-1-p processing enzyme family domain identified by match to protein family HMM PF02678 match to protein family HMM PF07883 YP_002298164.1 identified by match to protein family HMM PF00258 match to protein family HMM PF03358 match to protein family HMM TIGR01755 YP_002298165.1 identified by match to protein family HMM PF00126 match to protein family HMM PF03466 YP_002298166.1 identified by match to protein family HMM PF00043 match to protein family HMM PF02798 YP_002298167.1 identified by match to protein family HMM PF00106 YP_002298168.1 identified by Glimmer2 putative YP_002298169.1 identified by match to protein family HMM PF07486 YP_002298170.1 identified by Glimmer2 putative YP_002298171.1 Gene symbol synonym mrdB; identified by match to protein family HMM PF00265 YP_002298172.1 Gene symbol synonym pbpA.Part of the rodA operon YP_002298174.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_002298175.1 functions in MreBCD complex in some organisms YP_002298176.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_002298177.1 identified by Glimmer2 putative YP_002298178.1 identified by match to protein family HMM PF00903 YP_002298179.1 identified by match to protein family HMM PF00854 match to protein family HMM TIGR00924 YP_002298180.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_002298181.1 identified by match to protein family HMM PF01433 match to protein family HMM TIGR02414 YP_002298182.1 identified by match to protein family HMM PF01661 YP_002298183.1 identified by Glimmer2 putative YP_002298184.1 [synonyms] IPP transferase identified by match to protein family HMM PF00582 YP_002298187.1 [synonyms] protease Do YP_002298188.1 identified by match to protein family HMM PF02632 YP_002298189.1 TIGR01932 YP_002298190.1 TIGR01932HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages; The HflKC complex is anchored in the membrane and expos identified by match to protein family HMM PF01098 match to protein family HMM TIGR02210 YP_002298191.1 identified by match to protein family HMM PF00905 match to protein family HMM PF03717 YP_002298192.1 identified by Glimmer2 putative YP_002298193.1 identified by match to protein family HMM PF04085 match to protein family HMM TIGR00219 YP_002298194.1 identified by match to protein family HMM PF02491 match to protein family HMM PF06723 match to protein family HMM TIGR00904 YP_002298195.1 identified by match to protein family HMM PF00682 match to protein family HMM TIGR00973 YP_002298197.1 identified by Glimmer2 putative YP_002298198.1 identified by Glimmer2 putative YP_002298199.1 identified by match to protein family HMM PF01450 match to protein family HMM PF07991 match to protein family HMM TIGR00465 YP_002298201.1 identified by match to protein family HMM PF01842 match to protein family HMM TIGR00119 YP_002298202.1 identified by match to protein family HMM PF00205 match to protein family HMM PF02775 match to protein family HMM PF02776 match to protein family HMM TIGR00118 YP_002298204.1 identified by match to protein family HMM PF01715 match to protein family HMM TIGR00174 YP_002298206.1 identified by match to protein family HMM PF00702 match to protein family HMM TIGR00338 match to protein family HMM TIGR01488 YP_002298207.1 identified by Glimmer2 putative YP_002298208.1 Contains Sigma-70 region 2 and Sigma-70 region 4, see PF04542Probably contains a sigma factor YP_002298209.1 identified by match to protein family HMM PF01145 match to protein family HMM TIGR01932 YP_002298210.1 identified by match to protein family HMM PF01145 match to protein family HMM TIGR01933 YP_002298211.1 identified by match to protein family HMM PF01883 YP_002298212.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_002298213.1 identified by match to protein family HMM PF01053 match to protein family HMM PF01212 YP_002298214.1 identified by match to protein family HMM PF00291 match to protein family HMM PF00571 YP_002298215.1 identified by Glimmer2 putative YP_002298216.1 identified by match to protein family HMM PF00186 YP_002298217.1 identified by Glimmer2 putative YP_002298218.1 identified by Glimmer2 putative YP_002298219.1 identified by Glimmer2 putative YP_002298223.1 Part of the PF01037 YP_002298228.1 identified by match to protein family HMM PF04542 match to protein family HMM PF04545 match to protein family HMM TIGR02937 YP_002298229.1 identified by match to protein family HMM PF00303 YP_002298230.1 identified by match to protein family HMM PF07031 YP_002298231.1 identified by match to protein family HMM PF04993 YP_002298232.1 identified by match to protein family HMM PF00140 match to protein family HMM PF03979 match to protein family HMM PF04539 match to protein family HMM PF04542 match to protein family HMM PF04545 match to protein family HMM PF04546 match to protein family HMM TIGR02393 match to protein family HMM TIGR02937 YP_002298233.1 identified by match to protein family HMM PF01751 match to protein family HMM PF01807 match to protein family HMM TIGR01391 YP_002298234.1 identified by match to protein family HMM PF02637 YP_002298235.1 [synonyms] Cyclopropane fatty acid synt Hase CFA synt Hase YP_002298236.1 identified by match to protein family HMM PF00117 match to protein family HMM PF00988 match to protein family HMM TIGR01368 YP_002298239.1 PF00557 Has good score above the trusted cutoff and uncharacterized homologs YP_002298240.1 TIGR00181 PF01432: Peptidase family M3; With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF00289 match to protein family HMM PF02142 match to protein family HMM PF02222 match to protein family HMM PF02786 match to protein family HMM PF02787 match to protein family HMM TIGR01369 YP_002298241.1 identified by match to protein family HMM PF01272 match to protein family HMM PF03449 match to protein family HMM TIGR01462 YP_002298242.1 identified by match to protein family HMM PF02417 match to protein family HMM TIGR00937 YP_002298243.1 identified by match to protein family HMM PF01037 YP_002298244.1 identified by match to protein family HMM PF06258 YP_002298246.1 contains PIN domain identified by match to protein family HMM PF03994 YP_002298248.1 identified by match to protein family HMM PF00376 YP_002298250.1 identified by match to protein family HMM PF00875 match to protein family HMM PF03441 YP_002298251.1 identified by match to protein family HMM PF01266 match to protein family HMM PF01593 YP_002298252.1 identified by match to protein family HMM PF07103 YP_002298253.1 identified by match to protein family HMM PF02353 YP_002298256.1 identified by match to protein family HMM PF05175 match to protein family HMM PF06325 YP_002298257.1 identified by match to protein family HMM PF00557 YP_002298258.1 identified by match to protein family HMM PF01432 match to protein family HMM TIGR00181 YP_002298259.1 identified by match to protein family HMM PF00015 YP_002298262.1 identified by match to protein family HMM PF00990 match to protein family HMM TIGR00254 YP_002298263.1 identified by match to protein family HMM PF00805 YP_002298264.1 identified by Glimmer2 putative YP_002298265.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_002298267.1 identified by match to protein family HMM PF00809 match to protein family HMM PF02310 match to protein family HMM PF02607 match to protein family HMM PF02965 match to protein family HMM TIGR02082 YP_002298271.1 identified by match to protein family HMM PF00989 match to protein family HMM PF02518 match to protein family HMM PF07568 match to protein family HMM TIGR00229 YP_002298272.1 TIGR00079 YP_002298274.1 identified by match to protein family HMM PF02219 match to protein family HMM TIGR00676 YP_002298275.1 [Synonyms] Pyridine nucleotide transhydrogenase subunit beta Nicotinamide nucleotide transhydrogenase subunit beta Proton-translocating transhydrogenase NADP(H)-binding component identified by match to protein family HMM PF01022 YP_002298276.1 [Synonyms] Pyridine nucleotide transhydrogenase subunit alpha 2 Nicotinamide nucleotide transhydrogenase subunit alpha 2 Proton-translocating transhydrogenase component 2 identified by match to protein family HMM PF04333 YP_002298277.1 [Synonyms] Pyridine nucleotide transhydrogenase subunit alpha 1 Nicotinamide nucleotide transhydrogenase subunit alpha 1 Proton-translocating transhydrogenase component 1 identified by match to protein family HMM PF05494 YP_002298278.1 identified by Glimmer2 putative YP_002298279.1 identified by Glimmer2 putative YP_002298280.1 identified by match to protein family HMM PF00529 YP_002298281.1 [Synonyms] Bacteriochlorophyll synt Hase 33 kDa chain identified by match to protein family HMM PF00005 YP_002298282.1 identified by match to protein family HMM PF01061 YP_002298283.1 [synonyms] Geranylgeranyl hydrogenase identified by match to protein family HMM PF07690 YP_002298284.1 [synonyms] Magnesium-chelatase 38 kDa subunit Mg-protoporphyrin IX chelatase YP_002298285.1 involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; part of a complex with BchI, BchD, and BchH YP_002298286.1 [synonyms] Mg-protoporphyrin IX chelatase identified by match to protein family HMM PF02639 YP_002298287.1 [contains]hydrolase, alpha YP_002298288.1 [synonyms] Phytoene desaturase identified by match to protein family HMM PF01323 YP_002298290.1 identified by Glimmer2 putative YP_002298291.1 identified by Glimmer2 putative YP_002298292.1 part of the carotenoid biosynthesis gene cluster identified by match to protein family HMM PF01165 match to protein family HMM TIGR00030 YP_002298293.1 [synonyms] Farnesyl-diphosphate synt Hase YP_002298294.1 [Synonyms] O-methylase identified by match to protein family HMM PF02233 YP_002298296.1 identified by match to protein family HMM PF01262 match to protein family HMM PF05222 YP_002298299.1 identified by match to protein family HMM PF00293 match to protein family HMM TIGR02150 YP_002298300.1 identified by match to protein family HMM PF01040 match to protein family HMM TIGR01476 YP_002298301.1 identified by match to protein family HMM PF03209 match to protein family HMM PF07690 YP_002298302.1 identified by match to protein family HMM PF01266 match to protein family HMM PF01494 match to protein family HMM PF07992 match to protein family HMM TIGR02023 match to protein family HMM TIGR02032 YP_002298303.1 identified by match to protein family HMM PF01078 match to protein family HMM TIGR02030 YP_002298304.1 Cytochrome c552 YP_002298305.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine YP_002298306.1 identified by match to protein family HMM PF00561 YP_002298307.1 oxidative; catalyzes the formation of divinylprotochlorophyllide from magnesium-protoporphyrin IX 13-monomethyl ester in isocyclic ring formation in chlorophyll biosynthesis YP_002298308.1 identified by match to protein family HMM PF00494 YP_002298311.1 identified by match to protein family HMM PF07143 YP_002298312.1 identified by match to protein family HMM PF01266 match to protein family HMM PF01593 match to protein family HMM TIGR02734 YP_002298313.1 catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine YP_002298314.1 light-independent; with chlN(bchN) and chlB(bchB) reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll/bacteriochlorophyll production YP_002298315.1 involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; the enzyme from Rhodobacter capsulatus contains an Fe-S cluster; part of a complex with BchI, BchD, and BchH YP_002298316.1 light-independent reduction of protochlorophyllide to form chlorophyllide a YP_002298317.1 light-independent reduction of protochlorophyllide to form chlorophyllide a YP_002298318.1 identified by match to protein family HMM PF00148 match to protein family HMM PF06710 match to protein family HMM TIGR02014 YP_002298319.1 identified by match to protein family HMM PF00556 YP_002298320.1 identified by match to protein family HMM PF00556 YP_002298321.1 identified by match to protein family HMM PF00124 match to protein family HMM TIGR01157 YP_002298322.1 identified by match to protein family HMM PF00124 match to protein family HMM TIGR01115 YP_002298323.1 identified by Glimmer2 putative YP_002298324.1 identified by match to protein family HMM PF00034 YP_002298325.1 identified by match to protein family HMM PF00155 match to protein family HMM PF00202 match to protein family HMM PF01053 match to protein family HMM PF01212 match to protein family HMM TIGR01821 YP_002298326.1 identified by match to protein family HMM TIGR03055 YP_002298327.1 identified by match to protein family HMM PF02915 match to protein family HMM TIGR02029 YP_002298328.2 frameshift reading error, two bases mis-inserted (annotation error) YP_002298331.1 identified by match to protein family HMM PF03967 match to protein family HMM TIGR01150 YP_003475888.1 identified by match to protein family HMM PF03602 match to protein family HMM PF05175 match to protein family HMM PF07109 match to protein family HMM TIGR02021 YP_002298332.1 identified by match to protein family HMM PF00142 match to protein family HMM TIGR01281 YP_002298333.1 identified by match to protein family HMM PF02514 match to protein family HMM TIGR02025 YP_002298334.1 identified by match to protein family HMM PF00148 match to protein family HMM TIGR01278 YP_002298335.1 identified by match to protein family HMM PF00148 match to protein family HMM TIGR01279 YP_002298336.1 [contains] MOFRL domain identified by match to protein family HMM PF07284 match to protein family HMM TIGR02020 YP_002298337.1 identified by match to protein family HMM PF02310 YP_002298338.1 identified by match to protein family HMM PF00989 match to protein family HMM PF02954 match to protein family HMM TIGR00229 match to protein family HMM TIGR02040 YP_002298339.1 identified by match to protein family HMM PF00128 match to protein family HMM PF02446 match to protein family HMM PF02922 match to protein family HMM TIGR00217 match to protein family HMM TIGR02402 match to protein family HMM TIGR02457 YP_002298340.1 identified by Glimmer2 putative YP_002298343.1 identified by match to protein family HMM PF00271 YP_002298344.1 identified by Glimmer2 putative YP_002298345.1 TIGR02290 PF01432: Peptidase family M3; TIGR role Has a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF00072 match to protein family HMM PF01339 YP_002298346.1 identified by match to protein family HMM PF00072 match to protein family HMM PF01584 match to protein family HMM PF01627 match to protein family HMM PF02518 YP_002298347.1 identified by Glimmer2 putative YP_002298349.1 identified by match to protein family HMM PF01584 YP_002298350.1 identified by match to protein family HMM PF01739 match to protein family HMM PF03705 YP_002298351.1 identified by match to protein family HMM PF01584 YP_002298352.1 identified by match to protein family HMM PF00072 YP_002298353.1 identified by Glimmer2 putative YP_002298354.1 identified by match to protein family HMM PF03109 YP_002298355.1 identified by Glimmer2 putative YP_002298356.1 [synonyms] protease Do YP_002298357.1 identified by match to protein family HMM PF05013 YP_002298358.1 identified by match to protein family HMM PF06844 YP_002298361.1 identified by match to protein family HMM PF00441 match to protein family HMM PF02770 YP_002298362.1 identified by match to protein family HMM PF00355 YP_002298364.1 identified by match to protein family HMM PF01432 match to protein family HMM TIGR02290 YP_002298365.1 identified by match to protein family HMM PF00072 YP_002298367.1 identified by match to protein family HMM PF00037 match to protein family HMM PF02754 YP_002298368.1 identified by match to protein family HMM PF00325 YP_002298369.1 This protein may be called sigma-32, sigma factor H, heat shock sigma factor, and alternative sigma factor RpoH.Contains PF04542:Sigma-70 region 2 and PF04545:Sigma-70, region 4 YP_002298370.1 identified by Glimmer2 putative YP_002298371.1 identified by match to protein family HMM PF01565 match to protein family HMM PF02913 YP_002298372.1 identified by match to protein family HMM PF00444 match to protein family HMM TIGR01022 YP_002298375.1 identified by Glimmer2 putative YP_002298376.1 identified by match to protein family HMM PF02353 YP_002298377.1 [includes] Uroporphyrin-III C-methyltransferase (cobA) Precorrin-2 dehydrogenase Sirohydrochlorin ferrochelatase identified by match to protein family HMM PF00072 match to protein family HMM PF00158 match to protein family HMM PF02954 match to protein family HMM PF07728 YP_002298378.1 identified by match to protein family HMM PF01627 YP_002298380.1 identified by match to protein family HMM PF00313 match to protein family HMM PF08206 YP_002298381.1 [Synonyms] PAPS reductase, thioredoxin dependent PAdoPS reductase 3'-phosphoadenylylsulfate reductase PAPS sulfotransferase identified by match to protein family HMM PF01019 match to protein family HMM TIGR00066 YP_002298382.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_002298383.1 [synonyms] NodQ bifunctional enzyme [Includes] Sulfate adenylyltransferase subunit 1, Adenylyl-sulfate kinase identified by match to protein family HMM PF00805 YP_002298384.1 identified by match to protein family HMM PF00117 match to protein family HMM PF07722 YP_002298386.1 PF01432 With a good score above the trusted cutoff and characterized homologs; SP:P24171: Peptidyl-dipeptidase dcp (EC 3.4.15.5) YP_002298387.1 alpha and a beta chain YP_002298388.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_002298390.1 identified by match to protein family HMM PF02566 YP_002298391.1 identified by match to protein family HMM PF00199 YP_002298393.1 identified by match to protein family HMM PF00015 match to protein family HMM PF00672 YP_002298394.1 identified by Glimmer2 putative YP_002298395.1 Also called cell division protein ftsY identified by match to protein family HMM PF00175 match to protein family HMM PF00970 YP_002298396.1 identified by match to protein family HMM PF00590 match to protein family HMM TIGR01469 match to protein family HMM TIGR01470 YP_002298397.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_002298398.1 identified by match to protein family HMM PF01077 match to protein family HMM PF03460 YP_002298399.1 identified by match to protein family HMM PF06073 YP_002298400.1 identified by match to protein family HMM PF01507 match to protein family HMM TIGR00434 YP_002298401.1 identified by match to protein family HMM PF01507 match to protein family HMM TIGR02039 YP_002298402.1 identified by match to protein family HMM PF00009 match to protein family HMM PF01583 match to protein family HMM PF03144 match to protein family HMM TIGR00455 match to protein family HMM TIGR02034 YP_002298403.1 identified by Glimmer2 putative YP_002298404.1 Signal recognition particle consists of a 4.5 RNA molecule and protein ffh; identified by match to protein family HMM PF02386 YP_002298405.1 identified by match to protein family HMM PF01432 YP_002298406.1 identified by match to protein family HMM PF00549 match to protein family HMM TIGR01016 YP_002298407.1 identified by match to protein family HMM PF00549 match to protein family HMM PF02629 match to protein family HMM TIGR01019 YP_002298408.1 identified by match to protein family HMM PF03929 YP_002298411.1 identified by match to protein family HMM PF02424 YP_002298412.1 identified by match to protein family HMM PF04940 YP_002298413.1 Contains PF00496 YP_002298414.1 Contains PF00496 identified by match to protein family HMM PF00448 match to protein family HMM PF02881 match to protein family HMM TIGR00064 YP_002298415.1 Contains PF00496 identified by match to protein family HMM PF00919 match to protein family HMM PF04055 match to protein family HMM TIGR00089 match to protein family HMM TIGR01579 YP_002298416.1 Possible gene symbol synonymsAlso called molybdenum transport protein modE; identified by match to protein family HMM PF00132 match to protein family HMM PF06426 match to protein family HMM TIGR01172 YP_002298417.1 Gene symbol synonymsPart of the mod operon; identified by match to protein family HMM PF01678 match to protein family HMM TIGR00652 YP_002298418.1 Gene symbol synonym chlJ; identified by match to protein family HMM PF04138 YP_002298419.1 identified by match to protein family HMM PF00535 YP_002298421.1 identified by match to protein family HMM PF00805 YP_002298423.1 identified by match to protein family HMM PF00448 match to protein family HMM PF02881 match to protein family HMM PF02978 match to protein family HMM TIGR00959 YP_002298424.1 identified by match to protein family HMM PF00583 YP_002298425.1 This protein may be called sigma-32, sigma factor H, heat shock sigma factor, and alternative sigma factor RpoH.Contains PF04542:Sigma-70 region 2 and PF04545:Sigma-70, region 4; identified by match to protein family HMM PF00903 YP_002298426.1 Alternate names identified by match to protein family HMM PF00886 match to protein family HMM TIGR00002 YP_002298427.1 PF01435 identified by match to protein family HMM PF01782 match to protein family HMM PF05239 match to protein family HMM TIGR02273 YP_002298428.1 identified by Glimmer2 putative YP_002298429.1 identified by Glimmer2 putative YP_002298430.1 identified by Glimmer2 putative YP_002298431.1 identified by match to protein family HMM PF00496 YP_002298432.1 identified by match to protein family HMM PF00496 YP_002298433.1 identified by match to protein family HMM PF00496 YP_002298434.1 identified by Glimmer2 putative YP_002298435.1 TIGR01249With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF00005 match to protein family HMM PF03459 match to protein family HMM TIGR02142 YP_002298436.1 identified by match to protein family HMM PF00496 YP_002298437.1 identified by match to protein family HMM PF00126 YP_002298438.1 identified by match to protein family HMM PF00528 match to protein family HMM TIGR02141 YP_002298439.1 identified by match to protein family HMM PF01547 match to protein family HMM TIGR01256 YP_002298440.1 [Synonyms] ATP synt Hase epsilon chain identified by match to protein family HMM PF06080 YP_002298441.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_002298442.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_002298443.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_002298444.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_002298445.1 identified by Glimmer2 putative YP_002298446.1 identified by match to protein family HMM PF00211 match to protein family HMM PF00672 YP_002298447.1 TIGR00500Methionine aminopeptidase is a cobalt-binding enzyme; The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine; identified by match to protein family HMM PF01435 YP_002298450.1 PF00534 YP_002298452.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_002298453.1 identified by match to protein family HMM PF07298 YP_002298455.1 identified by match to protein family HMM PF00999 match to protein family HMM PF03471 YP_002298456.1 identified by match to protein family HMM PF00561 match to protein family HMM TIGR01249 YP_002298457.1 identified by match to protein family HMM PF00293 YP_002298458.1 identified by match to protein family HMM PF06945 YP_002298460.1 identified by Glimmer2 putative YP_002298461.1 Also called methyl-accepting chemotaxis receptor YP_002298462.1 identified by match to protein family HMM PF00231 match to protein family HMM TIGR01146 YP_002298463.1 identified by match to protein family HMM PF00006 match to protein family HMM PF00306 match to protein family HMM PF02874 match to protein family HMM TIGR00962 YP_002298464.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_002298465.1 No HMMs but in the close position to closely related proteins from the same family.All homologs are uncharacterized YP_002298466.1 identified by match to protein family HMM PF01943 YP_002298467.1 Phosphodeoxyriboaldolase identified by match to protein family HMM PF00557 match to protein family HMM TIGR00500 YP_002298468.1 Synonym identified by match to protein family HMM PF00781 YP_002298469.1 identified by match to protein family HMM PF00149 YP_002298470.1 identified by match to protein family HMM PF00534 YP_002298471.1 identified by match to protein family HMM PF05163 YP_002298472.1 identified by match to protein family HMM PF00270 match to protein family HMM PF00271 match to protein family HMM PF04851 match to protein family HMM TIGR00595 YP_002298473.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_002298475.1 identified by match to protein family HMM PF00923 match to protein family HMM TIGR00875 YP_002298476.1 identified by match to protein family HMM PF04340 YP_002298477.1 identified by match to protein family HMM PF00589 match to protein family HMM PF02899 match to protein family HMM TIGR02224 YP_002298478.1 identified by match to protein family HMM PF01381 YP_002298479.1 Also called Hg(II) reductase; identified by match to protein family HMM PF00070 match to protein family HMM PF01134 match to protein family HMM PF02852 match to protein family HMM PF07992 match to protein family HMM TIGR01350 YP_002298481.1 identified by match to protein family HMM PF00015 YP_002298482.1 identified by match to protein family HMM PF00072 match to protein family HMM PF00512 match to protein family HMM PF01627 match to protein family HMM PF02518 YP_002298483.1 identified by match to protein family HMM PF00198 match to protein family HMM PF00364 match to protein family HMM PF02817 match to protein family HMM TIGR01347 YP_002298484.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_002298485.1 identified by Glimmer2 putative YP_002298486.1 identified by Glimmer2 putative YP_002298487.1 identified by match to protein family HMM PF01791 match to protein family HMM TIGR00126 YP_002298488.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_002298489.1 identified by match to protein family HMM PF00072 YP_002298490.1 identified by match to protein family HMM PF00128 match to protein family HMM PF02922 match to protein family HMM TIGR02100 YP_002298491.1 identified by match to protein family HMM PF00892 YP_002298492.1 identified by match to protein family HMM PF00892 YP_002298493.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_002298494.1 identified by match to protein family HMM PF00591 match to protein family HMM PF02885 match to protein family HMM PF07831 match to protein family HMM TIGR02643 match to protein family HMM TIGR02644 YP_002298495.1 identified by match to protein family HMM TIGR02122 YP_002298496.1 TIGR00460 PF00551: Formyl transferase; With a good score above the trusted cutoff and characterized homologs YP_002298497.1 identified by Glimmer2 putative YP_002298499.1 identified by match to protein family HMM PF00070 match to protein family HMM PF01134 match to protein family HMM PF01266 match to protein family HMM PF02852 match to protein family HMM PF07992 YP_002298501.1 identified by match to protein family HMM PF00468 match to protein family HMM TIGR01030 YP_002298502.1 identified by match to protein family HMM PF00825 match to protein family HMM TIGR00188 YP_002298504.1 identified by match to protein family HMM PF01926 match to protein family HMM TIGR00650 YP_002298506.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_002298507.1 identified by Glimmer2 putative YP_002298508.1 identified by match to protein family HMM PF00696 match to protein family HMM TIGR00761 YP_002298509.1 PF04389 With a good score above the trusted cutoff and uncharacterized homologs YP_002298510.1 PF04389 With a good score above the trusted cutoff and uncharacterized homologs; In the same cluster With other genes of the same family; identified by match to protein family HMM PF00989 match to protein family HMM PF00990 match to protein family HMM PF01590 match to protein family HMM TIGR00229 match to protein family HMM TIGR00254 YP_002298511.1 identified by match to protein family HMM PF00702 match to protein family HMM TIGR01509 match to protein family HMM TIGR01993 YP_002298512.1 identified by match to protein family HMM TIGR00965 YP_002298513.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_002298515.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_002298516.1 identified by match to protein family HMM PF00551 match to protein family HMM PF02911 match to protein family HMM TIGR00460 YP_002298518.1 TIGR00472 With a good score above the trusted cutoff and characterized homologs; identified by match to protein family HMM PF01327 match to protein family HMM TIGR00079 YP_002298519.1 Also called methyl-accepting chemotaxis receptor YP_002298520.1 identified by match to protein family HMM PF05168 YP_002298521.1 identified by match to protein family HMM PF01909 YP_002298522.1 identified by match to protein family HMM PF01370 YP_002298523.1 identified by match to protein family HMM PF00534 YP_002298524.1 identified by match to protein family HMM PF01751 match to protein family HMM PF02132 match to protein family HMM TIGR00615 YP_002298525.1 identified by Glimmer2 putative YP_002298526.1 catalyzes the formation of malonyl-CoA from malonate and CoA YP_002298527.1 identified by Glimmer2 putative YP_002298528.1 identified by match to protein family HMM PF06571 YP_002298529.1 identified by match to protein family HMM PF04389 YP_002298530.1 In a close position to genes from the similar family; With a good score above the trusted cutoff and uncharacterized homologs; SP|P37095| Peptidase B (EC 3.4.11.23) (Aminopeptidase B); identified by match to protein family HMM PF04389 YP_002298532.1 identified by match to protein family HMM PF01632 match to protein family HMM TIGR00001 YP_002298533.1 identified by match to protein family HMM PF00453 match to protein family HMM TIGR01032 YP_002298534.1 identified by Glimmer2 putative YP_002298535.1 [synonyms] acetate--CoA ligase identified by match to protein family HMM PF01402 YP_002298537.1 identified by Glimmer2 putative YP_002298538.1 identified by Glimmer2 putative YP_002298539.1 identified by Glimmer2 putative YP_002298540.1 identified by match to protein family HMM PF03741 YP_002298541.1 identified by match to protein family HMM PF00450 YP_002298542.1 identified by Glimmer2 putative YP_002298543.1 identified by Glimmer2 putative YP_002298546.1 HMM, PF01435 YP_002298547.1 [synonyms] sun protein identified by match to protein family HMM TIGR02122 YP_002298548.1 identified by match to protein family HMM PF02798 YP_002298549.1 identified by match to protein family HMM PF00883 YP_002298550.1 identified by match to protein family HMM PF01047 YP_002298551.1 involved in de novo purine biosynthesis YP_002298552.1 identified by Glimmer2 putative YP_002298553.1 identified by Glimmer2 putative YP_002298554.1 identified by Glimmer2 putative YP_002298555.1 identified by match to protein family HMM PF00501 match to protein family HMM TIGR02188 YP_002298559.1 PF00574SP:Q9PLM0: ATP-dependent Clp protease proteolytic subunit 2 (EC 3.4.21.92)(Endopeptidase Clp 2) YP_002298560.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_002298561.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_002298564.1 identified by match to protein family HMM PF00565 YP_002298565.1 possibly a protoporphyrinogen oxidase identified by match to protein family HMM PF07896 YP_002298566.1 identified by match to protein family HMM PF01435 YP_002298567.1 identified by match to protein family HMM PF01029 match to protein family HMM PF01189 match to protein family HMM PF05175 match to protein family HMM TIGR00563 YP_002298568.1 identified by match to protein family HMM PF03737 match to protein family HMM TIGR01935 YP_002298569.1 identified by match to protein family HMM PF00834 match to protein family HMM TIGR01163 YP_002298570.1 [Synonyms] N(1)-alpha-phosphoribosyltransferase identified by match to protein family HMM PF07940 YP_002298571.1 identified by match to protein family HMM PF01808 match to protein family HMM PF02142 match to protein family HMM TIGR00355 YP_002298572.1 Has several uncharecterized protein secretion chaperonine homologs YP_002298573.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_002298574.1 protein associated with Co2+ and Mg2+ efflux YP_002298575.1 identified by match to protein family HMM PF00355 YP_002298576.1 identified by match to protein family HMM PF04543 YP_002298577.1 identified by match to protein family HMM PF03795 YP_002298578.1 identified by match to protein family HMM PF04972 YP_002298579.1 identified by match to protein family HMM PF00574 YP_002298580.1 identified by match to protein family HMM PF01210 match to protein family HMM PF02558 match to protein family HMM PF03807 match to protein family HMM PF07479 YP_002298581.1 identified by match to protein family HMM PF00814 match to protein family HMM TIGR00329 YP_002298582.1 identified by Glimmer2 putative YP_002298583.1 identified by Glimmer2 putative YP_002298585.1 identified by Glimmer2 putative YP_002298586.1 identified by Glimmer2 putative YP_002298587.1 identified by match to protein family HMM PF04366 YP_002298588.1 identified by match to protein family HMM PF00300 YP_002298589.1 identified by match to protein family HMM PF02654 match to protein family HMM TIGR00317 YP_002298590.1 identified by match to protein family HMM PF02277 YP_002298592.1 identified by match to protein family HMM PF01588 match to protein family HMM TIGR02222 YP_002298593.1 identified by Glimmer2 putative YP_002298594.1 identified by Glimmer2 putative YP_002298595.1 identified by match to protein family HMM PF00583 YP_002298596.1 identified by match to protein family HMM PF00005 YP_002298598.1 identified by match to protein family HMM PF07804 match to protein family HMM PF07805 YP_002298599.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002298601.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_002298602.1 identified by Glimmer2 putative YP_002298605.1 identified by Glimmer2 putative YP_002298608.1 identified by Glimmer2 putative YP_002298609.1 identified by Glimmer2 putative YP_002298610.1 identified by Glimmer2 putative YP_002298611.1 Contains both ArsA domain & ArsA ATPase in sequence; identified by match to protein family HMM PF00593 match to protein family HMM PF07715 YP_002298613.1 identified by match to protein family HMM PF00216 YP_002298614.1 identified by match to protein family HMM PF07366 YP_002298617.1 [contains] S4 domain YP_002298619.1 identified by Glimmer2 putative YP_002298620.1 identified by match to protein family HMM PF00989 match to protein family HMM PF07536 match to protein family HMM TIGR00229 YP_002298621.1 identified by Glimmer2 putative YP_002298622.1 molecular chaperone YP_002298625.1 identified by match to protein family HMM PF00106 YP_002298626.1 identified by match to protein family HMM PF06803 YP_002298627.1 [synonyms] intracellular polyhydroxyalkanoate depolymerase YP_002298628.1 identified by Glimmer2 putative YP_002298629.1 identified by match to protein family HMM TIGR01444 YP_002298630.1 identified by Glimmer2 putative YP_002298633.1 identified by Glimmer2 putative YP_002298634.1 identified by match to protein family HMM PF01928 match to protein family HMM PF05235 YP_002298635.1 identified by match to protein family HMM PF01609 YP_002298636.1 identified by match to protein family HMM PF01209 YP_002298637.1 identified by match to protein family HMM PF00440 YP_002298638.1 identified by Glimmer2 putative YP_002298639.1 identified by match to protein family HMM PF01479 YP_002298640.1 identified by match to protein family HMM PF00271 YP_002298641.1 [synonyms] ubiquinol-Cytochrome c reductase, iron-sulfur subunit YP_002298642.1 identified by match to protein family HMM PF01381 YP_002298643.1 identified by Glimmer2 putative YP_002298645.1 identified by match to protein family HMM PF00183 match to protein family HMM PF02518 YP_002298646.1 identified by Glimmer2 putative YP_002298647.1 identified by match to protein family HMM PF05951 match to protein family HMM TIGR01409 YP_002298648.1 identified by match to protein family HMM PF07345 YP_002298650.1 identified by Glimmer2 putative YP_002298651.1 Cytidine YP_002298652.1 identified by Glimmer2 putative YP_002298657.1 identified by match to protein family HMM PF00529 match to protein family HMM TIGR01730 YP_002298658.1 identified by match to protein family HMM PF00005 match to protein family HMM PF02687 YP_002298659.1 identified by Glimmer2 putative YP_002298660.1 identified by match to protein family HMM PF00122 match to protein family HMM PF00689 match to protein family HMM PF00690 match to protein family HMM PF00702 match to protein family HMM TIGR01494 YP_002298662.1 identified by match to protein family HMM PF00027 match to protein family HMM PF00999 YP_002298663.1 identified by match to protein family HMM PF00582 YP_002298664.1 identified by match to protein family HMM PF00355 match to protein family HMM TIGR01409 match to protein family HMM TIGR01416 YP_002298665.1 identified by Glimmer2 putative YP_002298667.1 identified by Glimmer2 putative YP_002298668.1 identified by Glimmer2 putative YP_002298670.1 PF01430 Has many uncharacterized homologs With the same identity; identified by match to protein family HMM PF01594 YP_002298672.1 identified by match to protein family HMM PF00583 YP_002298674.1 identified by match to protein family HMM PF01156 YP_002298676.1 identified by Glimmer2 putative YP_002298677.1 identified by match to protein family HMM PF01887 YP_002298678.1 Also many matches to long-chain fatty acid transport protein; identified by match to protein family HMM PF01297 YP_002298679.1 identified by match to protein family HMM PF00005 YP_002298680.1 [contains] DTW domain identified by match to protein family HMM PF00950 YP_002298681.1 identified by match to protein family HMM PF00950 YP_002298683.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_002298685.1 identified by match to protein family HMM PF01027 YP_002298687.1 identified by match to protein family HMM PF03364 YP_002298688.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_002298692.1 identified by match to protein family HMM PF01925 YP_002298693.1 PF02190 With a good score above the trusted cutoff and characterized homologs; SP|P36774| ATP-dependent protease La 2 (EC 3.4.21.53); identified by match to protein family HMM PF01430 YP_002298694.1 identified by match to protein family HMM PF00185 match to protein family HMM PF02729 match to protein family HMM TIGR00658 YP_002298695.1 identified by match to protein family HMM PF00202 match to protein family HMM TIGR00707 YP_002298696.1 identified by match to protein family HMM PF04519 YP_002298698.1 identified by match to protein family HMM PF00753 YP_002298700.1 identified by match to protein family HMM PF00512 match to protein family HMM PF00989 match to protein family HMM PF02518 match to protein family HMM TIGR00229 YP_002298701.1 identified by match to protein family HMM PF03349 YP_002298702.1 identified by match to protein family HMM PF00476 match to protein family HMM PF01367 match to protein family HMM PF01612 match to protein family HMM PF02739 match to protein family HMM TIGR00593 YP_002298703.1 identified by match to protein family HMM PF03942 YP_002298705.1 identified by match to protein family HMM PF00216 match to protein family HMM TIGR00988 YP_002298706.1 identified by match to protein family HMM PF00575 match to protein family HMM TIGR00717 YP_002298707.1 Part of the psp operon.Sigma-54 dependent transcriptional regulator; identified by match to protein family HMM PF02224 match to protein family HMM TIGR00017 YP_002298708.1 identified by Glimmer2 putative YP_002298709.1 identified by match to protein family HMM PF04014 YP_002298711.1 identified by match to protein family HMM PF00275 match to protein family HMM TIGR01356 YP_002298712.1 identified by Glimmer2 putative YP_002298713.1 identified by match to protein family HMM PF00535 YP_002298715.1 identified by Glimmer2 putative YP_002298716.1 identified by match to protein family HMM PF02190 YP_002298717.1 identified by match to protein family HMM PF03966 YP_002298718.1 identified by Glimmer2 putative YP_002298719.1 identified by Glimmer2 putative YP_002298720.1 identified by match to protein family HMM PF01914 match to protein family HMM TIGR00427 YP_002298721.1 identified by match to protein family HMM PF01144 match to protein family HMM TIGR02429 YP_002298722.1 Gene symbol synonyms rfaE, waaE.Also called D-beta-D-heptose 7-phosphate kinase, D-beta-D-heptose 7-phosphotransferase, D-beta-D-heptose 1-phosphate adenosyltransferase; identified by match to protein family HMM PF01144 match to protein family HMM TIGR02428 YP_002298723.1 PF00535 With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF04055 match to protein family HMM TIGR00238 YP_002298724.1 identified by match to protein family HMM PF04654 YP_002298725.1 identified by match to protein family HMM PF02798 match to protein family HMM TIGR01262 YP_002298726.1 identified by match to protein family HMM PF01557 YP_002298727.1 identified by match to protein family HMM PF04209 YP_002298728.1 identified by Glimmer2 putative YP_002298729.1 identified by match to protein family HMM PF04255 YP_002298730.1 identified by match to protein family HMM PF00158 match to protein family HMM PF02954 match to protein family HMM TIGR02974 YP_002298732.1 identified by Glimmer2 putative YP_002298733.1 identified by match to protein family HMM PF06667 match to protein family HMM TIGR02976 YP_002298734.1 identified by match to protein family HMM PF04024 match to protein family HMM TIGR02978 YP_002298735.1 Member of the two-component regulatory system regB YP_002298736.1 Contains PF00072 YP_002298737.1 identified by match to protein family HMM PF00903 YP_002298739.1 identified by match to protein family HMM PF00501 YP_002298740.1 identified by match to protein family HMM PF00571 match to protein family HMM PF01595 match to protein family HMM PF03471 YP_002298742.1 identified by Glimmer2 putative YP_002298744.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_002298745.1 identified by match to protein family HMM PF00294 match to protein family HMM PF01467 match to protein family HMM TIGR00125 match to protein family HMM TIGR02198 match to protein family HMM TIGR02199 YP_002298746.1 required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA YP_002298747.1 identified by Glimmer2 putative YP_002298749.1 NO HMMs but some uncharacterized homologs identified as HSP70; identified by match to protein family HMM PF02798 YP_002298750.1 identified by match to protein family HMM PF02706 YP_002298752.1 identified by Glimmer2 putative YP_002298753.1 identified by match to protein family HMM PF00534 YP_002298754.1 identified by match to protein family HMM PF00534 YP_002298756.1 identified by match to protein family HMM PF01061 YP_002298757.1 identified by match to protein family HMM PF00005 YP_002298758.1 identified by match to protein family HMM PF00512 match to protein family HMM PF02518 YP_002298759.1 identified by match to protein family HMM PF00072 match to protein family HMM PF02954 YP_002298760.1 identified by match to protein family HMM PF02397 match to protein family HMM TIGR03022 match to protein family HMM TIGR03025 YP_002298761.1 identified by match to protein family HMM PF00106 match to protein family HMM PF01073 match to protein family HMM PF01370 match to protein family HMM PF02719 match to protein family HMM PF04321 match to protein family HMM PF07993 match to protein family HMM TIGR01179 YP_002298764.1 Has no HMMs but Has several homologs identified as glycosyl transferase non of which is characterized; identified by match to protein family HMM PF01168 match to protein family HMM TIGR00044 YP_002298766.1 identified by Glimmer2 putative YP_002298767.1 identified by match to protein family HMM PF00133 match to protein family HMM TIGR00396 YP_002298769.1 identified by Glimmer2 putative YP_002298772.1 identified by Glimmer2 putative YP_002298773.1 identified by match to protein family HMM PF01381 YP_002298774.1 Also matches to cation efflux family protein; identified by match to protein family HMM PF01475 YP_002298776.1 identified by match to protein family HMM PF00990 match to protein family HMM TIGR00254 YP_002298777.1 identified by Glimmer2 putative YP_002298778.1 Gene symbol synonyms identified by match to protein family HMM PF04055 match to protein family HMM TIGR00048 YP_002298779.1 Gene symbol synonym Alternate names: Glycerol metabolism activator, protein agmR, positive regulator AgmR; Also matched to PF00196: transcriptional regulator, LuxR family and PF00072: Response regulator receiver domain YP_002298780.1 identified by match to protein family HMM TIGR01730 YP_002298781.1 Contains PF02518, TIGR00229, PF00512, and PF00072; identified by match to protein family HMM PF00873 YP_002298782.1 SP identified by match to protein family HMM PF01022 YP_002298784.1 identified by Glimmer2 putative YP_002298785.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_002298787.1 PF00166 YP_002298788.1 TIGR02348 PF00118: TCP-1 YP_002298789.1 identified by Glimmer2 putative YP_002298790.1 identified by Glimmer2 putative YP_002298791.1 identified by match to protein family HMM PF00529 YP_002298792.1 identified by Glimmer2 putative YP_002298793.1 identified by Glimmer2 putative YP_002298794.1 identified by match to protein family HMM PF00165 match to protein family HMM PF02311 match to protein family HMM PF07883 YP_002298795.1 identified by Glimmer2 putative YP_002298796.1 identified by Glimmer2 putative YP_002298797.1 identified by match to protein family HMM PF00849 YP_002298798.1 identified by Glimmer2 putative YP_002298800.1 identified by match to protein family HMM PF00691 YP_002298801.1 Matched to PF05443 identified by match to protein family HMM PF00072 match to protein family HMM PF00196 YP_002298803.1 identified by match to protein family HMM PF00072 match to protein family HMM PF00512 match to protein family HMM PF00989 match to protein family HMM PF02518 match to protein family HMM TIGR00229 YP_002298804.1 PF00814 identified by match to protein family HMM PF02556 match to protein family HMM TIGR00809 YP_002298805.1 PF01427 With a good score above the trusted cutoff and characterized homolog; SP:Q9XAK6: D-alanyl-D-alanine dipeptidase (EC 3.4.13.-); identified by match to protein family HMM PF01053 match to protein family HMM TIGR01325 YP_002298807.1 [contains] Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase domain identified by match to protein family HMM PF01842 match to protein family HMM PF01966 match to protein family HMM TIGR01693 YP_002298808.1 identified by match to protein family HMM PF06233 YP_002298809.1 ATP pyrophosphate-lyase 1, Adenylylcyclase 1 identified by match to protein family HMM PF00166 YP_002298810.1 identified by match to protein family HMM PF00118 match to protein family HMM TIGR02348 YP_002298813.1 PF01470 TIGR00504: pyrrolidone-carboxylate peptidase; With a good score above the trusted cutoff and characterized homologs (SP:O73944); identified by match to protein family HMM PF01272 match to protein family HMM PF03449 match to protein family HMM TIGR01461 YP_002298814.1 identified by Glimmer2 putative YP_002298815.1 identified by Glimmer2 putative YP_002298816.1 TIGR00233 With a good score above the trusted cutoff and characterized homologs YP_002298819.1 identified by match to protein family HMM PF00580 YP_002298820.1 Gene symbol synonym htpM YP_002298821.1 identified by match to protein family HMM PF01553 YP_002298823.1 identified by match to protein family HMM PF05443 YP_002298824.1 TIGR00019 With a good score above the trusted cutoff and characterized homologs; identified by match to protein family HMM PF01206 YP_002298825.1 identified by match to protein family HMM PF00583 match to protein family HMM TIGR01575 YP_002298826.1 identified by Glimmer2 putative YP_002298827.1 identified by Glimmer2 putative YP_002298828.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_002298829.1 identified by match to protein family HMM PF01832 YP_002298830.1 identified by Glimmer2 putative YP_002298831.1 identified by match to protein family HMM PF00211 YP_002298833.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_002298834.1 [Synonyms] 3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase DHHB methyltransferase ubiquinone biosynthesis O-methyltransferase identified by match to protein family HMM PF01925 YP_002298835.1 identified by match to protein family HMM PF01470 YP_002298838.1 identified by Glimmer2 putative YP_002298839.1 identified by match to protein family HMM PF00579 match to protein family HMM TIGR00233 YP_002298840.1 identified by match to protein family HMM PF01551 YP_002298841.1 identified by match to protein family HMM PF01694 YP_002298842.1 identified by match to protein family HMM PF00004 match to protein family HMM PF02861 match to protein family HMM PF07724 match to protein family HMM PF07728 YP_002298843.1 identified by Glimmer2 putative YP_002298844.1 Contains PF02518, TIGR00229, and PF00512 YP_002298845.1 identified by match to protein family HMM PF05175 match to protein family HMM TIGR00536 YP_002298846.1 identified by match to protein family HMM PF00472 match to protein family HMM PF03462 match to protein family HMM TIGR00019 YP_002298847.1 identified by match to protein family HMM PF04365 YP_002298850.1 identified by match to protein family HMM PF04551 match to protein family HMM TIGR00612 YP_002298853.1 PF00639Close to proteins from the same family; identified by match to protein family HMM PF00391 match to protein family HMM PF01590 match to protein family HMM PF02896 match to protein family HMM PF05524 match to protein family HMM TIGR01417 YP_002298854.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_002298855.1 identified by match to protein family HMM PF00696 match to protein family HMM PF01842 match to protein family HMM TIGR00656 match to protein family HMM TIGR00657 YP_002298856.1 identified by match to protein family HMM TIGR01983 YP_002298857.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_002298858.1 identified by match to protein family HMM PF00107 YP_002298859.1 identified by match to protein family HMM PF00805 YP_002298860.1 identified by match to protein family HMM PF03445 YP_002298862.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_002298863.1 identified by match to protein family HMM PF04341 YP_002298864.1 identified by Glimmer2 putative YP_002298866.1 identified by match to protein family HMM PF00512 match to protein family HMM PF00989 match to protein family HMM PF02518 match to protein family HMM TIGR00229 YP_002298867.1 identified by match to protein family HMM PF00072 YP_002298868.1 identified by match to protein family HMM PF00462 match to protein family HMM TIGR02181 YP_002298869.1 identified by match to protein family HMM PF00795 YP_002298870.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_002298872.1 identified by match to protein family HMM PF00293 YP_002298873.1 synonymincludes isocitrate lyase(EC 4.1.3.1) and malate synt Hase(EC 2.3.3.9) identified by match to protein family HMM PF00583 YP_002298874.1 identified by Glimmer2 putative YP_002298875.1 identified by match to protein family HMM PF00639 YP_002298876.1 Also called pseudocatalase; identified by match to protein family HMM PF01043 match to protein family HMM PF02810 match to protein family HMM PF07516 match to protein family HMM PF07517 match to protein family HMM TIGR00963 YP_002298877.1 identified by match to protein family HMM PF01934 YP_002298878.1 [contains] Flavin reductase like domain identified by match to protein family HMM PF01909 YP_002298879.1 identified by match to protein family HMM PF03255 match to protein family HMM TIGR00513 YP_002298881.1 identified by Glimmer2 putative YP_002298882.1 Also called lateral flagellar motor protein MotA.Stator protein exerts torque against rotor YP_002298883.1 Not many homologs With this identity, some identified as putative acyl-CoA synthetase, long-chain fatty acid identified by match to protein family HMM PF00571 match to protein family HMM PF01595 match to protein family HMM PF03471 YP_002298884.1 Also called methyl-accepting chemotaxis receptor YP_002298885.1 Synonomous With deoxyinosine 3'endonuclease, deoxyribonuclease V, andDNase V; identified by match to protein family HMM PF01761 match to protein family HMM TIGR01357 YP_002298886.1 identified by Glimmer2 putative YP_002298887.1 TIGR02074 With a good score above the trusted cutoff and uncharacterized homologs; PF00905: Penicillin binding protein transpeptidase domain YP_002298890.1 identified by Glimmer2 putative YP_002298891.1 identified by match to protein family HMM PF05063 YP_002298892.1 Gene symbol synonym YP_002298894.1 identified by match to protein family HMM PF05685 YP_002298895.1 identified by match to protein family HMM PF01381 match to protein family HMM PF06114 YP_002298896.1 identified by match to protein family HMM PF00463 match to protein family HMM TIGR01346 YP_002298898.1 identified by Glimmer2 putative YP_002298899.1 identified by Glimmer2 putative YP_002298900.1 identified by Glimmer2 putative YP_002298901.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_002298902.1 Also called tyrosine kinase DivL andsensory box histidine kinase; identified by match to protein family HMM PF00378 YP_002298903.1 identified by Glimmer2 putative YP_002298904.1 identified by Glimmer2 putative YP_002298905.1 identified by Glimmer2 putative YP_002298906.1 identified by match to protein family HMM PF00501 YP_002298907.1 identified by Glimmer2 putative YP_002298908.1 identified by match to protein family HMM PF04493 YP_002298909.1 sensory box histidine kinase.Contains PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00512: His Kinase A (phosphoacceptor) domain, PF00512: His Kinase A (phosphoacceptor) domain, and PF00989: PAS fold YP_002298910.1 identified by match to protein family HMM PF00905 match to protein family HMM PF00912 match to protein family HMM TIGR02074 YP_002298911.1 identified by Glimmer2 putative YP_002298912.1 identified by Glimmer2 putative YP_002298913.1 TIGR00524 With a good score above the trusted cutoff and uncharacterized homologs YP_002298914.1 identified by Glimmer2 putative YP_002298915.1 PF00005 With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF02264 YP_002298916.1 identified by Glimmer2 putative YP_002298917.1 identified by Glimmer2 putative YP_002298918.1 No HMMs , but some uncharacterized homologs identified as transposase; identified by match to protein family HMM PF00497 YP_002298919.1 identified by match to protein family HMM PF00528 match to protein family HMM TIGR01726 YP_002298920.1 identified by match to protein family HMM PF00528 match to protein family HMM TIGR01726 YP_002298923.1 PF03576 With a good score above the trusted cutoff and uncharacterized homologs YP_002298924.1 identified by Glimmer2 putative YP_002298925.1 identified by match to protein family HMM PF00512 match to protein family HMM PF02518 YP_002298928.1 Alternate name YP_002298929.1 identified by Glimmer2 putative YP_002298931.1 Synonym identified by match to protein family HMM PF06945 YP_002298932.1 Contains PF02518, PF00072, PF00512, and TIGR00229; identified by match to protein family HMM PF00512 match to protein family HMM PF00989 match to protein family HMM PF02518 match to protein family HMM TIGR00229 YP_002298933.1 identified by Glimmer2 putative YP_002298936.1 identified by match to protein family HMM PF01008 match to protein family HMM TIGR00524 YP_002298938.1 identified by match to protein family HMM PF00005 match to protein family HMM PF00664 match to protein family HMM PF03412 YP_002298941.1 PF02897 PF00326: prolyl oligopeptidase family; With a good score above the trusted cutoff and uncharacterized homologs YP_002298942.1 identified by Glimmer2 putative YP_002298943.1 plasmid stabilization system protein, RelE/ParE family YP_002298944.1 identified by match to protein family HMM PF00529 YP_002298945.1 identified by match to protein family HMM PF03576 YP_002298946.1 identified by Glimmer2 putative YP_002298948.1 identified by match to protein family HMM PF00588 YP_002298950.1 identified by match to protein family HMM PF00107 YP_002298951.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_002298953.1 identified by match to protein family HMM PF00483 match to protein family HMM TIGR02091 YP_002298954.1 identified by match to protein family HMM PF00534 match to protein family HMM TIGR02095 YP_002298955.1 identified by match to protein family HMM PF00072 match to protein family HMM PF00512 match to protein family HMM PF02518 match to protein family HMM TIGR00229 YP_002298956.1 Also called penicillin amidase YP_002298957.1 identified by match to protein family HMM PF03061 YP_002298958.1 identified by match to protein family HMM PF05958 YP_002298959.1 identified by Glimmer2 putative YP_002298960.1 identified by Glimmer2 putative YP_002298962.1 identified by Glimmer2 putative YP_002298963.1 identified by Glimmer2 putative YP_002298964.1 identified by match to protein family HMM PF00326 match to protein family HMM PF02897 YP_002298966.1 [synonyms] Carbonate dehydratase identified by match to protein family HMM PF05016 YP_002298968.1 identified by match to protein family HMM PF00905 YP_002298970.1 Also called cell division protein FtsK; identified by match to protein family HMM PF00702 match to protein family HMM TIGR01509 YP_002298972.1 identified by match to protein family HMM PF00583 match to protein family HMM PF02629 YP_002298973.1 Also called glutamine amidotransferase YP_002298974.1 Also several to proteic killer suppression protein; identified by match to protein family HMM PF00719 YP_002298975.1 identified by match to protein family HMM PF00294 YP_002298976.1 identified by match to protein family HMM PF04519 YP_002298977.1 identified by Glimmer2 putative YP_002298978.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_002298979.1 Also called glyoxalase family protein; identified by match to protein family HMM PF00266 match to protein family HMM TIGR01814 YP_002298980.1 identified by match to protein family HMM PF00496 YP_002298983.1 identified by match to protein family HMM PF04199 match to protein family HMM TIGR03035 YP_002298985.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_002298986.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_002298987.1 identified by match to protein family HMM PF03301 YP_002298988.1 [Synonyms] NADPH:quinone reductase identified by match to protein family HMM PF00194 YP_002298989.1 [Synonyms] Dienelactone hydrolase identified by match to protein family HMM PF01266 match to protein family HMM PF01494 match to protein family HMM TIGR01988 YP_002298990.1 identified by match to protein family HMM PF00543 YP_002298991.1 identified by match to protein family HMM PF00155 YP_002298992.1 identified by match to protein family HMM PF01580 YP_002298993.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_002298994.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_002298995.1 [synonyms] glucose inhibited division protein identified by match to protein family HMM PF00117 match to protein family HMM PF07722 YP_002298996.1 Contains domains of both ArsA & ParA YP_002298997.1 Also called ParB family protein; identified by match to protein family HMM PF01381 match to protein family HMM TIGR02607 YP_002298998.1 identified by Glimmer2 putative YP_002298999.1 identified by match to protein family HMM PF03372 match to protein family HMM TIGR00195 match to protein family HMM TIGR00633 YP_002299002.1 identified by match to protein family HMM PF00903 YP_002299003.1 TIGR00418 With a good score above the trusted cutoff and characterized homologs; identified by match to protein family HMM PF03653 match to protein family HMM TIGR00701 YP_002299004.1 TIGR00168 PF00707: Translation initiation factor IF-3, C-terminal domain; PF05198: Translation initiation factor IF-3, N-terminal domain; With a good score above the trusted cutoff and characterized homologs; identified by match to protein family HMM PF00762 match to protein family HMM TIGR00109 YP_002299005.1 identified by Glimmer2 putative YP_002299006.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_002299007.1 identified by Glimmer2 putative YP_002299008.1 identified by match to protein family HMM PF01488 match to protein family HMM TIGR00507 YP_002299009.1 Part of a chv operon; identified by match to protein family HMM PF01121 match to protein family HMM TIGR00152 YP_002299010.1 Member of a two-component regulatory system chvG YP_002299011.1 sensory box histidine kinase identified by match to protein family HMM PF00107 YP_002299012.1 identified by Glimmer2 putative YP_002299013.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_002299015.1 identified by Glimmer2 putative YP_002299016.1 identified by Glimmer2 putative YP_002299017.1 identified by match to protein family HMM PF01134 match to protein family HMM PF01266 match to protein family HMM TIGR00136 YP_002299018.1 [Includes] Folylpolyglutamate synt Hase Dihydrofolate synt Hase identified by match to protein family HMM PF02527 match to protein family HMM TIGR00138 YP_002299019.1 identified by match to protein family HMM PF01656 YP_002299020.1 identified by match to protein family HMM PF02195 match to protein family HMM TIGR00180 YP_002299021.1 identified by Glimmer2 putative YP_002299022.1 identified by Glimmer2 putative YP_002299023.1 identified by match to protein family HMM PF00561 YP_002299024.1 identified by match to protein family HMM PF00534 YP_002299025.1 identified by match to protein family HMM PF01075 YP_002299026.1 identified by match to protein family HMM PF00587 match to protein family HMM PF02824 match to protein family HMM PF03129 match to protein family HMM PF07973 match to protein family HMM TIGR00418 YP_002299027.1 identified by match to protein family HMM PF00707 match to protein family HMM PF05198 match to protein family HMM TIGR00168 YP_002299029.1 identified by match to protein family HMM PF01293 match to protein family HMM TIGR00224 YP_002299031.1 identified by match to protein family HMM PF01243 YP_002299032.1 identified by match to protein family HMM PF00072 match to protein family HMM PF00486 YP_002299033.1 identified by Glimmer2 putative YP_002299034.1 identified by match to protein family HMM PF00512 match to protein family HMM PF00989 match to protein family HMM PF02518 match to protein family HMM TIGR00229 YP_002299036.1 identified by match to protein family HMM PF00291 match to protein family HMM TIGR00263 YP_002299037.1 identified by Glimmer2 putative YP_002299038.1 identified by Glimmer2 putative YP_002299039.1 identified by Glimmer2 putative YP_002299040.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_002299041.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_002299042.1 identified by Glimmer2 putative YP_002299043.1 identified by Glimmer2 putative YP_002299044.1 identified by match to protein family HMM PF00520 YP_002299046.1 identified by Glimmer2 putative YP_002299047.1 PF01965 With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF01575 YP_002299048.1 identified by match to protein family HMM PF07690 YP_002299049.1 HPrK YP_002299052.1 Also called Histidine-containing protein.Part of a pts operon; Gene symbol synonym ptsO; identified by match to protein family HMM PF00072 match to protein family HMM PF00512 match to protein family HMM PF00989 match to protein family HMM PF01590 match to protein family HMM PF02518 match to protein family HMM TIGR00229 YP_002299053.1 Part of the ptsHI operon YP_002299054.1 identified by match to protein family HMM PF01061 YP_002299055.1 identified by match to protein family HMM PF01061 YP_002299056.1 [Includes] Methylenetetrahydrofolate dehydrogenase Methenyltetrahydrofolate cyclohydrolase identified by match to protein family HMM PF03171 YP_002299058.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_002299059.1 identified by match to protein family HMM PF01717 YP_002299060.1 [contains] 4Fe-4S binding domain YP_002299063.1 identified by match to protein family HMM PF00012 match to protein family HMM TIGR02350 YP_002299064.1 [function] NnrU is thought to be involved in the reduction of nitric oxide; The exact function of NnrU is unclear; It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor; identified by match to protein family HMM PF00226 match to protein family HMM PF00684 match to protein family HMM PF01556 match to protein family HMM TIGR02349 YP_002299066.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_002299067.1 identified by Glimmer2 putative YP_002299068.1 identified by match to protein family HMM PF06108 YP_002299070.1 identified by Glimmer2 putative YP_002299071.1 TIGR01382 PF01965: DJ-1 YP_002299073.1 identified by match to protein family HMM PF03668 YP_002299074.1 identified by match to protein family HMM PF03610 YP_002299075.1 identified by Glimmer2 putative YP_002299076.1 identified by Glimmer2 putative YP_002299077.1 MAPEG (Membrane Associated Proteins in Eicosanoid and Glutathione metabolism) family YP_002299078.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_002299079.1 identified by Glimmer2 putative YP_002299080.1 identified by match to protein family HMM PF00763 match to protein family HMM PF02882 YP_002299081.1 identified by Glimmer2 putative YP_002299082.1 identified by Glimmer2 putative YP_002299083.1 This protein performs the mismatch recognition step during the DNA repair process YP_002299084.1 identified by match to protein family HMM PF00037 match to protein family HMM TIGR00273 YP_002299086.1 identified by match to protein family HMM PF01713 YP_002299087.1 identified by Glimmer2 putative YP_002299088.1 identified by Glimmer2 putative YP_002299089.1 identified by match to protein family HMM PF00999 match to protein family HMM PF02254 YP_002299090.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_002299091.1 identified by match to protein family HMM PF03009 YP_002299092.1 TIGR00487 PF04760: Translation initiation factor IF-2, N-terminal region; PF04760: Translation initiation factor IF-2, N-terminal region YP_002299095.1 identified by match to protein family HMM PF01965 match to protein family HMM TIGR01382 YP_002299096.1 identified by match to protein family HMM PF03641 match to protein family HMM TIGR00730 YP_002299097.1 identified by match to protein family HMM PF00512 match to protein family HMM PF00989 match to protein family HMM PF02518 match to protein family HMM TIGR00229 YP_002299098.1 identified by Glimmer2 putative YP_002299101.1 Part of the Axe family.Part of the yefM-yoeB toxin-antitoxin system; identified by match to protein family HMM PF01124 YP_002299102.1 Part of the yefM-yoeB toxin-antitoxin system; identified by match to protein family HMM PF02146 YP_002299104.1 identified by match to protein family HMM PF01451 YP_002299107.1 Contains PF00072 identified by match to protein family HMM PF00488 match to protein family HMM PF01624 match to protein family HMM PF05188 match to protein family HMM PF05190 match to protein family HMM PF05192 match to protein family HMM TIGR01070 YP_002299108.1 identified by match to protein family HMM PF05685 YP_002299109.1 identified by match to protein family HMM PF00005 YP_002299110.1 identified by match to protein family HMM PF02687 YP_002299113.1 identified by match to protein family HMM PF02576 YP_002299114.1 identified by Glimmer2 putative YP_002299115.1 identified by Glimmer2 putative YP_002299116.1 identified by Glimmer2 putative YP_002299118.1 identified by match to protein family HMM PF00903 YP_002299119.1 identified by Glimmer2 putative YP_002299120.1 identified by Glimmer2 putative YP_002299121.1 [Synonyms] Glycerophosphodiester phosphodiesterase identified by match to protein family HMM PF00312 match to protein family HMM TIGR00952 YP_002299123.1 identified by Glimmer2 putative YP_002299125.1 identified by Glimmer2 putative YP_002299126.1 identified by match to protein family HMM PF06769 match to protein family HMM TIGR02116 YP_002299127.1 identified by match to protein family HMM PF01389 YP_002299129.1 identified by Glimmer2 putative YP_002299130.1 identified by match to protein family HMM PF00753 YP_002299131.1 identified by match to protein family HMM PF00072 match to protein family HMM PF00486 YP_002299133.1 identified by Glimmer2 putative YP_002299134.1 PF00893 YP_002299136.1 PF01025It is a nucleotide exchange factor; identified by match to protein family HMM PF01066 YP_002299137.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_002299140.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_002299145.1 identified by Glimmer2 putative YP_002299146.1 identified by Glimmer2 putative YP_002299147.1 identified by Glimmer2 putative YP_002299148.1 patatin-like phospholipase domain YP_002299149.1 Synonomous With regulatory protein of adaptative response; identified by match to protein family HMM PF01475 YP_002299151.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_002299152.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_002299153.1 Also several matches to transcriptional regulator, XRE family YP_002299154.1 TIGR00546 YP_002299155.1 identified by match to protein family HMM PF01609 YP_002299157.1 identified by match to protein family HMM PF00126 match to protein family HMM PF03466 YP_002299158.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_002299160.1 Contains Sigma-70 region 2 and Sigma-70 region 4, see PF04542 identified by match to protein family HMM PF00893 YP_002299161.1 identified by match to protein family HMM PF01078 match to protein family HMM PF07728 match to protein family HMM TIGR00368 YP_002299162.1 identified by match to protein family HMM PF01025 YP_002299163.1 identified by Glimmer2 putative YP_002299164.1 Also contains PF00325 YP_002299165.1 identified by Glimmer2 putative YP_002299167.1 identified by match to protein family HMM PF01138 match to protein family HMM PF03725 match to protein family HMM TIGR01966 YP_002299168.1 identified by match to protein family HMM PF01725 match to protein family HMM TIGR00042 YP_002299169.1 identified by match to protein family HMM PF04402 YP_002299170.1 identified by match to protein family HMM PF04055 match to protein family HMM PF06969 match to protein family HMM TIGR00539 YP_002299171.1 identified by match to protein family HMM PF00501 YP_002299172.1 Has only 6 homologs all of which are uncharacterized; No HMMs were detected YP_002299175.1 identified by match to protein family HMM PF01734; similar to protein tyrosine phosphatase, putative YP_002299176.1 identified by match to protein family HMM PF00165 match to protein family HMM PF01035 match to protein family HMM TIGR00589 YP_002299177.1 [synonyms] 4-alpha-hydroxy-tetrahydropterin dehydratase YP_002299178.1 identified by match to protein family HMM PF02390 match to protein family HMM TIGR00091 YP_002299179.1 identified by match to protein family HMM PF00438 match to protein family HMM PF02772 match to protein family HMM PF02773 match to protein family HMM TIGR01034 YP_002299180.1 identified by match to protein family HMM PF01381 YP_002299181.1 identified by match to protein family HMM PF00795 match to protein family HMM TIGR00546 YP_002299182.1 identified by match to protein family HMM PF00571 match to protein family HMM PF03471 YP_002299183.1 identified by match to protein family HMM PF02130 match to protein family HMM TIGR00043 YP_002299184.1 identified by match to protein family HMM PF02562 YP_002299185.1 identified by match to protein family HMM PF00919 match to protein family HMM PF01938 match to protein family HMM PF04055 match to protein family HMM TIGR00089 match to protein family HMM TIGR01574 YP_002299186.1 Contains PF02518 YP_002299187.1 identified by match to protein family HMM PF04542 match to protein family HMM PF04545 match to protein family HMM TIGR02937 YP_002299188.1 identified by match to protein family HMM PF07883 match to protein family HMM TIGR02451 YP_002299189.1 identified by match to protein family HMM PF00561 YP_002299190.1 identified by Glimmer2 putative YP_002299191.1 ATP-binding protein; required for proper cytochrome c maturation YP_002299192.1 part of the cytochrome c-type biogenesis protein cluster[Synonym] Heme exporter protein B YP_002299193.1 part of the cytochrome c-type biogenesis protein cluster identified by match to protein family HMM PF05175 YP_002299194.1 part of the cytochrome c-type biogenesis protein cluster identified by match to protein family HMM PF00583 YP_002299195.1 part of the cytochrome c-type biogenesis protein cluster[synonyms] heme exporter protein CcmC YP_002299196.1 part of the cytochrome c-type biogenesis protein cluster[synonyms] heme exporter protein D identified by match to protein family HMM PF02445 match to protein family HMM TIGR00550 YP_002299197.1 part of the cytochrome c-type biogenesis protein cluster identified by match to protein family HMM PF00890 match to protein family HMM PF02910 match to protein family HMM PF07992 match to protein family HMM TIGR00551 YP_002299198.1 part of the cytochrome c-type biogenesis protein cluster identified by Glimmer2 putative YP_002299199.1 identified by match to protein family HMM PF03860 YP_002299200.1 part of the cytochrome c-type biogenesis protein cluster[synonym] thiol:disulfide interchange protein CycY identified by match to protein family HMM PF01022 YP_002299201.1 part of the cytochrome c-type biogenesis protein cluster identified by match to protein family HMM PF01451 YP_002299202.1 part of the cytochrome c-type biogenesis protein cluster.involved in anchoring the protein in the membrane; identified by match to protein family HMM PF01758 match to protein family HMM TIGR00832 YP_002299203.1 Also called methyl-accepting chemotaxis receptor YP_002299204.1 identified by Glimmer2 putative YP_002299205.1 identified by match to protein family HMM PF00005 YP_002299207.1 identified by match to protein family HMM PF04186 YP_002299208.1 identified by match to protein family HMM PF04280 YP_002299209.1 identified by match to protein family HMM PF03562 match to protein family HMM PF06725 YP_002299210.1 identified by match to protein family HMM PF00593 match to protein family HMM PF07715 match to protein family HMM TIGR01783 YP_002299212.1 identified by Glimmer2 putative YP_002299213.1 identified by match to protein family HMM PF00155 match to protein family HMM PF01041 match to protein family HMM PF01053 YP_002299214.1 identified by match to protein family HMM TIGR02001 YP_002299215.1 identified by match to protein family HMM PF00278 match to protein family HMM PF02784 YP_002299217.1 phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway YP_002299218.1 identified by Glimmer2 putative YP_002299219.1 Part of the hook-basal body (HBB) complex of the bacterial flagella.Component of the proximal rod transmission shaft With fliE and flgB; Located in the periplasmic space; Gene symbol synonyms fla FIII, flaW; identified by match to protein family HMM PF01551 YP_002299220.1 bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria; identified by match to protein family HMM PF04519 YP_002299221.1 dUTP diphosphatase identified by match to protein family HMM PF01578 match to protein family HMM TIGR01191 YP_002299222.1 identified by match to protein family HMM PF04995 YP_002299223.1 Also called PilT protein; identified by match to protein family HMM PF03100 YP_002299225.1 O-acetylserine sulfhydrylase,O-acetylserine (Thiol)-lyase identified by match to protein family HMM PF01578 match to protein family HMM TIGR00353 YP_002299226.1 identified by Glimmer2 putative YP_002299227.1 identified by match to protein family HMM PF03918 YP_002299228.1 identified by match to protein family HMM PF00515 match to protein family HMM PF07719 match to protein family HMM PF07721 YP_002299229.1 identified by match to protein family HMM PF00015 match to protein family HMM PF00672 YP_002299230.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_002299231.1 identified by match to protein family HMM PF00072 YP_002299232.1 identified by match to protein family HMM PF01545 match to protein family HMM TIGR01297 YP_002299233.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_002299234.1 identified by Glimmer2 putative YP_002299235.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_002299236.1 Contains PF02518 identified by match to protein family HMM PF01627 YP_002299238.1 identified by Glimmer2 putative YP_002299239.1 identified by match to protein family HMM PF00590 match to protein family HMM TIGR00096 YP_002299240.1 identified by match to protein family HMM PF02021 YP_002299241.1 binds the polymerase to DNA and acts as a sliding clamp YP_002299242.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_002299244.1 contains KAP family P-loop domain identified by match to protein family HMM PF06429 YP_002299245.1 Also called methyl-accepting chemotaxis receptor YP_002299246.1 identified by match to protein family HMM PF00692 match to protein family HMM TIGR00576 YP_002299247.1 identified by match to protein family HMM TIGR01552 YP_002299248.1 identified by match to protein family HMM PF01850 YP_002299249.1 identified by match to protein family HMM PF02082 match to protein family HMM TIGR00738 YP_002299250.1 identified by match to protein family HMM PF00291 match to protein family HMM TIGR01136 match to protein family HMM TIGR01139 YP_002299251.1 identified by Glimmer2 putative YP_002299252.1 This gene is the aerobic cobalamin pathway CobT subunit, not a homolog of cobT in the anaerobic pathway (E; coli cobalamin synthesis genes) YP_002299253.1 identified by match to protein family HMM PF00899 match to protein family HMM PF05237 YP_002299255.1 This gene is the aerobic cobalamin pathway CobS subunit, not a homolog of cobS in the anaerobic pathway (E; coli cobalamin synthesis genes); identified by match to protein family HMM PF01149 match to protein family HMM PF06831 match to protein family HMM TIGR00577 YP_002299256.1 PF00226 Has uncharacterized homologs of the same identity; In a close position to other chaperonin genes in the same cluster YP_002299257.1 identified by match to protein family HMM PF00378 YP_002299258.1 identified by match to protein family HMM PF01649 match to protein family HMM TIGR00029 YP_002299260.1 identified by Glimmer2 putative YP_002299261.1 identified by match to protein family HMM PF00512 match to protein family HMM PF02518 YP_002299264.1 identified by match to protein family HMM PF02518 match to protein family HMM PF07568 YP_002299265.1 identified by match to protein family HMM PF00712 match to protein family HMM PF02767 match to protein family HMM PF02768 match to protein family HMM TIGR00663 YP_002299266.1 identified by match to protein family HMM PF02463 match to protein family HMM TIGR00611 YP_002299267.1 identified by match to protein family HMM PF00204 match to protein family HMM PF00986 match to protein family HMM PF01751 match to protein family HMM PF02518 match to protein family HMM TIGR01059 YP_002299268.1 identified by match to protein family HMM PF07693 YP_002299269.1 identified by match to protein family HMM PF00015 match to protein family HMM PF00672 YP_002299270.1 identified by Glimmer2 putative YP_002299271.1 OMP decarboxylase identified by match to protein family HMM PF00941 match to protein family HMM PF03450 YP_002299272.1 Has more similarity to tPRAI of Thermotoga maritima than to ePRAI of E.coli; identified by match to protein family HMM PF01315 match to protein family HMM PF02738 YP_002299273.1 identified by Glimmer2 putative YP_002299274.1 functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins YP_002299276.1 identified by Glimmer2 putative YP_002299277.1 identified by match to protein family HMM PF06213 match to protein family HMM TIGR01651 YP_002299278.1 identified by match to protein family HMM PF01381 match to protein family HMM TIGR02607 YP_002299279.1 identified by match to protein family HMM PF05015 YP_002299280.1 identified by match to protein family HMM PF07728 match to protein family HMM TIGR01650 YP_002299281.1 identified by match to protein family HMM PF00226 YP_002299282.1 identified by match to protein family HMM PF00892 YP_002299283.1 identified by match to protein family HMM PF01722 YP_002299285.1 identified by Glimmer2 putative YP_002299286.1 identified by Glimmer2 putative YP_002299287.1 identified by match to protein family HMM PF01609 YP_002299288.1 identified by match to protein family HMM PF00015 match to protein family HMM PF00672 YP_002299289.1 identified by Glimmer2 putative YP_002299291.1 identified by match to protein family HMM PF00657 YP_002299293.1 identified by match to protein family HMM PF00248 YP_002299294.1 identified by Glimmer2 putative YP_002299297.1 identified by match to protein family HMM PF00215 match to protein family HMM TIGR01740 YP_002299298.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_002299300.1 identified by match to protein family HMM PF03308 match to protein family HMM TIGR00750 YP_002299301.1 identified by match to protein family HMM PF00441 match to protein family HMM PF02770 YP_002299303.1 identified by match to protein family HMM PF05690 YP_002299304.1 identified by match to protein family HMM PF02597 match to protein family HMM TIGR01683 YP_002299305.1 identified by match to protein family HMM PF01266 match to protein family HMM TIGR02352 YP_002299308.1 identified by match to protein family HMM PF07486 YP_002299314.1 identified by Glimmer2 putative YP_002299322.1 [Synonyms] HTP reductase YP_002299323.1 identified by Glimmer2 putative YP_002299324.1 identified by match to protein family HMM PF00156 match to protein family HMM TIGR01091 YP_002299325.1 PF01435 YP_002299326.1 identified by match to protein family HMM PF00561 YP_002299327.1 identified by Glimmer2 putative YP_002299328.1 identified by match to protein family HMM PF00528 match to protein family HMM TIGR01726 YP_002299329.1 identified by match to protein family HMM PF00528 match to protein family HMM TIGR01726 YP_002299334.1 identified by match to protein family HMM PF01019 match to protein family HMM TIGR00066 YP_002299335.1 Part of the znu operon; identified by match to protein family HMM PF00028 match to protein family HMM PF00353 YP_002299336.1 Part of the znu operon; identified by match to protein family HMM PF00389 match to protein family HMM PF02826 YP_002299337.1 Part of the znu operon; identified by match to protein family HMM PF06347 YP_002299338.1 identified by match to protein family HMM PF00596 YP_002299339.1 identified by match to protein family HMM PF07969 YP_002299340.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_002299342.1 identified by match to protein family HMM PF01381 match to protein family HMM PF06114 YP_002299343.1 catalyzes the formation of 2-oxobutanoate from L-threonine YP_002299344.1 identified by match to protein family HMM PF02592 match to protein family HMM TIGR00697 YP_002299345.1 identified by match to protein family HMM PF00753 match to protein family HMM PF07521 YP_002299346.1 identified by match to protein family HMM PF00353 match to protein family HMM PF00413 YP_002299347.1 identified by match to protein family HMM PF03848 match to protein family HMM PF05724 YP_002299349.1 identified by match to protein family HMM PF01872 YP_002299350.1 identified by match to protein family HMM PF01435 YP_002299351.1 HMMs are not matching the homologs; Relied on the several uncharacterized homologs identified as acylaminoacyl peptidase YP_002299352.1 [Synonyms] Coproporphyrinogenase Coprogen oxidase YP_002299354.1 identified by match to protein family HMM PF00881 YP_002299355.1 identified by match to protein family HMM PF00483 YP_002299356.1 identified by match to protein family HMM PF01636 YP_002299357.1 identified by Glimmer2 putative YP_002299358.1 [Synonyms] ETF-ubiquinone oxidoreductase ETF dehydrogenase Electron-transferring-flavoprotein dehydrogenase identified by match to protein family HMM PF00070 match to protein family HMM PF07992 YP_002299359.1 Family is homologous to the N-terminus of the DNA polymerase of phage SPO1 of Bacillus subtilis YP_002299362.1 identified by match to protein family HMM PF00950 YP_002299363.1 identified by match to protein family HMM PF00005 YP_002299364.1 identified by Glimmer2 putative YP_002299365.1 identified by match to protein family HMM PF01113 match to protein family HMM PF01118 match to protein family HMM PF05173 match to protein family HMM TIGR00036 YP_002299366.1 identified by Glimmer2 putative YP_002299367.1 identified by Glimmer2 putative YP_002299369.1 identified by match to protein family HMM PF01161 match to protein family HMM TIGR00481 YP_002299370.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_002299371.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002299372.1 identified by match to protein family HMM PF00702 match to protein family HMM TIGR01459 match to protein family HMM TIGR01460 YP_002299373.1 Also called 3'-5' exonuclease; identified by match to protein family HMM PF00174 YP_002299374.1 identified by match to protein family HMM PF00924 YP_002299375.1 identified by match to protein family HMM PF02152 match to protein family HMM TIGR00525 match to protein family HMM TIGR00526 YP_002299376.1 Found in the ntrA YP_002299377.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_002299378.1 identified by match to protein family HMM PF00326 match to protein family HMM PF07676 YP_002299379.1 identified by match to protein family HMM PF04055 match to protein family HMM PF06969 match to protein family HMM TIGR00538 YP_002299380.1 identified by match to protein family HMM PF03767 YP_002299381.1 PF00011 With many homologs, all are Hsp20 family chaperons, but not characterized; identified by match to protein family HMM PF04055 YP_002299382.1 identified by match to protein family HMM PF00288 match to protein family HMM TIGR00154 YP_002299383.1 Part of the C ring in the flagellar basal body of many bacteria along With fliG and fliM.Orgainization of fliN in the C ring, see J Bacteriol; 2006 Apr188(7):2502-11; Rotor YP_002299384.1 identified by Glimmer2 putative YP_002299385.1 identified by match to protein family HMM PF01266 match to protein family HMM PF05187 YP_002299386.1 identified by match to protein family HMM PF03167 match to protein family HMM TIGR00758 YP_002299388.1 identified by Glimmer2 putative YP_002299389.1 Gene symbol synonym identified by match to protein family HMM PF00535 YP_002299390.1 identified by Glimmer2 putative YP_002299392.1 Also called iron-regulated membrane protein; identified by match to protein family HMM PF00005 match to protein family HMM TIGR02673 YP_002299393.1 identified by match to protein family HMM PF01471 YP_002299395.1 identified by match to protein family HMM PF00310 match to protein family HMM PF01493 match to protein family HMM PF01645 match to protein family HMM PF04898 YP_002299396.1 identified by match to protein family HMM PF00043 match to protein family HMM PF02798 YP_002299397.1 identified by match to protein family HMM PF00070 match to protein family HMM PF07992 match to protein family HMM TIGR01318 YP_002299398.1 identified by match to protein family HMM PF02673 match to protein family HMM TIGR00753 YP_002299399.1 identified by Glimmer2 putative YP_002299400.1 Contains TIGR01730 identified by match to protein family HMM PF01612 YP_002299401.1 identified by match to protein family HMM PF06835 YP_002299402.1 identified by match to protein family HMM PF03968 YP_002299403.1 identified by match to protein family HMM PF00005 YP_002299404.1 [synonyms] rRNA-uridine isomerase E rRNA pseudouridylate synt Hase E identified by match to protein family HMM PF00309 match to protein family HMM PF04552 match to protein family HMM PF04963 match to protein family HMM TIGR02395 YP_002299405.1 identified by Glimmer2 putative YP_002299406.1 identified by match to protein family HMM PF00359 match to protein family HMM TIGR01419 YP_002299408.1 [synonyms] Imidazolone-5-propionate hydrolase identified by match to protein family HMM PF00011 YP_002299409.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate YP_002299410.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_002299414.1 identified by Glimmer2 putative YP_002299415.1 identified by Glimmer2 putative YP_002299416.1 identified by match to protein family HMM PF00593 match to protein family HMM PF07715 match to protein family HMM TIGR01783 YP_002299417.1 identified by Glimmer2 putative YP_002299419.1 Contains TIGR01730 identified by match to protein family HMM PF03929 YP_002299420.1 identified by Glimmer2 putative YP_002299421.1 identified by Glimmer2 putative YP_002299422.1 identified by match to protein family HMM PF00027 match to protein family HMM PF00571 match to protein family HMM PF03445 YP_002299424.1 identified by match to protein family HMM PF06347 YP_002299425.1 identified by match to protein family HMM PF00360 match to protein family HMM PF00512 match to protein family HMM PF00989 match to protein family HMM PF01590 match to protein family HMM PF02518 match to protein family HMM TIGR02373 YP_002299426.1 identified by Glimmer2 putative YP_002299428.1 identified by match to protein family HMM PF00873 YP_002299429.1 identified by match to protein family HMM PF00588 match to protein family HMM PF08032 YP_002299430.1 identified by match to protein family HMM PF00081 match to protein family HMM PF02777 match to protein family HMM TIGR01409 YP_002299431.1 [synonyms] 2-methylacyl-CoA racemase [similarity] Belongs to the caiB YP_002299433.1 similar to plasmid stabilization system protein, RelE YP_002299434.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_002299435.1 identified by match to protein family HMM PF01979 match to protein family HMM PF07969 match to protein family HMM TIGR01224 YP_002299436.1 Part of the pst operon; identified by match to protein family HMM PF01979 match to protein family HMM TIGR02022 YP_002299437.1 Part of the pst operon; identified by match to protein family HMM PF01175 match to protein family HMM TIGR01228 YP_002299438.1 Part of the pst operon; identified by match to protein family HMM PF05013 match to protein family HMM TIGR02017 YP_002299439.1 Gene symbol synonym Part of the pst operon; identified by match to protein family HMM PF00221 match to protein family HMM TIGR01225 YP_002299440.1 identified by match to protein family HMM PF00171 YP_002299441.1 Part of a pho operon.DNA-binding response regulator YP_002299443.1 identified by match to protein family HMM PF00106 YP_002299444.1 [contains] nucleotidyltransferase domain YP_002299445.1 identified by Glimmer2 putative YP_002299446.1 identified by Glimmer2 putative YP_002299448.1 identified by Glimmer2 putative YP_002299449.1 identified by match to protein family HMM PF02080 match to protein family HMM PF03600 YP_002299450.1 identified by match to protein family HMM PF00571 YP_002299451.1 identified by match to protein family HMM PF00188 YP_002299453.1 identified by match to protein family HMM PF01609 YP_002299455.1 identified by match to protein family HMM PF00005 YP_002299456.1 Membrane fusion protein.Also called efflux transporter RND family, MFP subunit and acriflavin resistance protein; Alternative gene symbol acrE; identified by match to protein family HMM PF00561 YP_002299458.1 identified by match to protein family HMM PF02515 YP_002299459.1 identified by match to protein family HMM PF03060 YP_002299460.1 [synonyms] Medium-chain acyl-CoA synthetase identified by match to protein family HMM PF05016 YP_002299461.1 identified by Glimmer2 putative YP_002299462.1 [contains] Phage Tail Collar Domain in region 7-63 identified by match to protein family HMM PF00512 match to protein family HMM PF02518 YP_002299463.1 identified by Glimmer2 putative YP_002299464.1 identified by match to protein family HMM PF00528 match to protein family HMM TIGR02138 YP_002299465.1 identified by match to protein family HMM PF00528 match to protein family HMM TIGR00974 YP_002299466.1 TIGR00390 PF07724: ATPase family associated With various cellular activities (AAA); identified by match to protein family HMM PF00005 match to protein family HMM TIGR00972 YP_002299467.1 heat shock protein involved in degradation of misfolded proteins YP_002299468.1 identified by Glimmer2 putative YP_002299469.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_002299470.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_002299471.1 identified by match to protein family HMM PF03109 match to protein family HMM TIGR01982 YP_002299472.1 identified by match to protein family HMM PF01909 YP_002299475.1 contains HIT domain in region 7-113 identified by match to protein family HMM PF07690 YP_002299476.1 Gene symbol synonym YP_002299477.1 Involved in multiple antibiotic resistance; identified by match to protein family HMM PF00515 match to protein family HMM PF07719 YP_002299478.1 identified by match to protein family HMM PF01370 YP_002299479.1 class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine YP_002299480.1 identified by match to protein family HMM PF02798 YP_002299481.1 identified by match to protein family HMM PF01209 YP_002299482.1 identified by match to protein family HMM PF00583 YP_002299484.1 identified by match to protein family HMM PF00005 YP_002299485.1 identified by Glimmer2 putative YP_002299486.1 identified by Glimmer2 putative YP_002299487.1 identified by match to protein family HMM PF00501 YP_002299488.1 identified by Glimmer2 putative YP_002299489.1 PF00717 identified by match to protein family HMM PF07484 YP_002299492.1 identified by Glimmer2 putative YP_002299493.1 identified by match to protein family HMM PF07724 match to protein family HMM TIGR00390 YP_002299494.1 identified by match to protein family HMM PF00227 YP_002299496.1 identified by match to protein family HMM PF00475 YP_002299497.1 identified by Glimmer2 putative YP_002299498.1 identified by match to protein family HMM PF00583 YP_002299499.1 identified by match to protein family HMM PF00977 match to protein family HMM TIGR00007 YP_002299500.1 identified by match to protein family HMM PF00977 match to protein family HMM TIGR00735 YP_002299501.1 identified by match to protein family HMM PF01503 YP_002299502.1 identified by match to protein family HMM PF01230 YP_002299503.1 identified by Glimmer2 putative YP_002299504.1 identified by match to protein family HMM PF01914 match to protein family HMM TIGR00427 YP_002299506.1 identified by match to protein family HMM PF01921 match to protein family HMM TIGR00467 YP_002299508.1 identified by match to protein family HMM PF00353 match to protein family HMM PF01839 YP_002299509.1 identified by match to protein family HMM PF00912 match to protein family HMM TIGR02070 YP_002299510.1 identified by match to protein family HMM PF00512 match to protein family HMM PF02518 YP_002299511.1 identified by match to protein family HMM PF01471 YP_002299516.1 Gene symbol synonyms identified by match to protein family HMM PF00717 YP_002299517.1 [contains] hydrolase, alpha YP_002299521.1 Contains PF02518 YP_002299525.1 identified by match to protein family HMM PF01177 match to protein family HMM TIGR00067 YP_002299526.1 identified by match to protein family HMM PF00128 YP_002299528.1 identified by Glimmer2 putative YP_002299529.1 identified by Glimmer2 putative YP_002299530.1 Contains EAL domain and GGDEF domain YP_002299531.1 identified by Glimmer2 putative YP_002299532.1 identified by match to protein family HMM PF00593 match to protein family HMM PF07715 YP_002299533.1 purS protein appears to be required for the function of the purL and purQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of purS is currently not known identified by match to protein family HMM TIGR01873 YP_002299534.1 identified by match to protein family HMM TIGR00287 YP_002299535.1 Catalyzes the conversion of citrate to isocitrate YP_002299536.1 Part of the opp operon YP_002299537.1 Part of the opp operon; identified by match to protein family HMM TIGR01907 YP_002299538.1 Part of the opp operon; identified by match to protein family HMM TIGR01868 match to protein family HMM TIGR02593 YP_002299540.1 Part of the opp operon; identified by match to protein family HMM TIGR02548 YP_002299541.1 identified by Glimmer2 putative YP_002299542.1 identified by match to protein family HMM PF00271 match to protein family HMM TIGR01587 YP_002299543.1 identified by match to protein family HMM PF00072 match to protein family HMM PF00512 match to protein family HMM PF00989 match to protein family HMM PF01590 match to protein family HMM PF02518 match to protein family HMM TIGR00229 YP_002299544.1 identified by match to protein family HMM PF00903 match to protein family HMM TIGR01263 YP_002299545.1 identified by match to protein family HMM PF01037 YP_002299546.1 identified by Glimmer2 putative YP_002299547.1 identified by Glimmer2 putative YP_002299548.1 identified by match to protein family HMM PF01380 YP_002299550.1 identified by match to protein family HMM PF00512 match to protein family HMM PF02518 YP_002299551.1 identified by match to protein family HMM PF00528 YP_002299552.1 identified by Glimmer2 putative YP_002299553.1 identified by match to protein family HMM PF03180 YP_002299554.1 identified by match to protein family HMM PF00126 match to protein family HMM PF03466 YP_002299555.1 identified by match to protein family HMM PF00248 YP_002299556.1 identified by match to protein family HMM PF00107 YP_002299559.1 identified by match to protein family HMM PF00563 match to protein family HMM PF00990 match to protein family HMM PF01590 match to protein family HMM TIGR00254 YP_002299560.1 Has some uncharacterized homologs identified as Serralysin precursor YP_002299561.1 identified by match to protein family HMM PF01259 match to protein family HMM TIGR00081 YP_002299563.1 identified by match to protein family HMM PF04102 YP_002299564.1 Gene symbol synonym identified by match to protein family HMM PF00330 match to protein family HMM PF00694 match to protein family HMM TIGR01341 YP_002299565.1 [contains] Molybdopterin binding domain YP_002299566.1 identified by Glimmer2 putative YP_002299567.1 identified by Glimmer2 putative YP_002299568.1 identified by match to protein family HMM PF00005 match to protein family HMM TIGR01727 YP_002299570.1 identified by match to protein family HMM PF00005 match to protein family HMM TIGR01727 YP_002299571.1 identified by Glimmer2 putative YP_002299572.1 identified by match to protein family HMM PF03741 YP_002299573.1 identified by Glimmer2 putative YP_002299574.1 sensory box histidine kinase identified by match to protein family HMM PF00293 YP_002299575.1 [Synonyms] IMPase Inositol-1-phosphatase identified by match to protein family HMM PF08085 YP_002299578.1 catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis YP_002299579.1 identified by Glimmer2 putative YP_002299580.1 identified by match to protein family HMM PF03733 YP_002299581.1 identified by Glimmer2 putative YP_002299583.1 identified by match to protein family HMM PF00162 YP_002299584.1 identified by match to protein family HMM PF00892 YP_002299585.1 identified by match to protein family HMM PF00697 YP_002299586.1 identified by match to protein family HMM PF00797 YP_002299587.1 identified by match to protein family HMM PF00206 match to protein family HMM TIGR00928 YP_002299588.1 identified by Glimmer2 putative YP_002299589.1 Family also contains tRNA nucleotidyltransferase; identified by match to protein family HMM PF04002 match to protein family HMM TIGR00608 YP_002299590.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_002299592.1 part of the cytochrome bc1-complex.[synonyms] Rieske iron-sulfur protein GeneName:fbcF identified by match to protein family HMM PF03749 match to protein family HMM TIGR00230 YP_002299593.1 part of the cytochrome bc1-complex.Cytochrome b identified by match to protein family HMM PF00994 YP_002299594.1 part of the cytochrome bc1-complex YP_002299598.1 identified by match to protein family HMM PF02826 YP_002299600.1 identified by match to protein family HMM PF07396 YP_002299601.1 Also called hydroxyacylglutathione hydrolase YP_002299602.1 Contains TIGRO00254 and PF00990; identified by match to protein family HMM PF00512 match to protein family HMM PF00989 match to protein family HMM PF02518 match to protein family HMM TIGR00229 YP_002299603.1 identified by match to protein family HMM PF00459 match to protein family HMM TIGR02067 YP_002299604.1 identified by Glimmer2 putative YP_002299605.1 identified by Glimmer2 putative YP_002299606.1 identified by Glimmer2 putative YP_002299608.1 identified by Glimmer2 putative YP_002299609.1 identified by Glimmer2 putative YP_002299613.1 identified by match to protein family HMM TIGR02226 YP_002299614.1 [contains] BNR YP_002299615.1 identified by match to protein family HMM PF07726 match to protein family HMM PF07728 YP_002299616.1 identified by match to protein family HMM PF06938 YP_002299617.1 identified by Glimmer2 putative YP_002299619.1 identified by Glimmer2 putative YP_002299620.1 similarity to YcjX-like family identified by match to protein family HMM PF01218 YP_002299621.1 identified by match to protein family HMM PF00588 YP_002299622.1 [synonyms] ketopantoate reductase identified by match to protein family HMM PF00355 match to protein family HMM TIGR01416 YP_002299623.1 identified by match to protein family HMM PF00032 match to protein family HMM PF00033 YP_002299624.1 identified by match to protein family HMM PF02167 YP_002299625.1 identified by match to protein family HMM PF06041 YP_002299626.1 identified by match to protein family HMM PF01926 match to protein family HMM PF06071 match to protein family HMM TIGR00092 YP_002299628.1 identified by match to protein family HMM PF00210 match to protein family HMM TIGR00754 YP_002299629.1 in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media YP_002299630.1 identified by match to protein family HMM PF02798 YP_002299631.1 identified by match to protein family HMM PF00753 YP_002299632.1 identified by Glimmer2 putative YP_002299633.1 identified by Glimmer2 putative YP_002299634.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_002299635.1 Contains PF00512, PF02518, PF00072, and TIGR00229 YP_002299637.1 identified by Glimmer2 putative YP_002299638.1 identified by Glimmer2 putative YP_002299639.1 identified by Glimmer2 putative YP_002299640.1 identified by match to protein family HMM PF00657 match to protein family HMM PF03797 match to protein family HMM TIGR01414 YP_002299641.1 identified by Glimmer2 putative YP_002299642.1 identified by match to protein family HMM PF00440 YP_002299644.1 identified by Glimmer2 putative YP_002299645.1 identified by match to protein family HMM PF07044 YP_002299646.1 identified by Glimmer2 putative YP_002299647.1 Catalyzes the rate-limiting step in dNTP synthesis YP_002299648.1 identified by match to protein family HMM PF00563 match to protein family HMM PF00672 match to protein family HMM PF00989 match to protein family HMM PF00990 match to protein family HMM TIGR00229 match to protein family HMM TIGR00254 YP_002299650.1 identified by match to protein family HMM PF04317 YP_002299651.1 identified by match to protein family HMM PF05128 match to protein family HMM TIGR01620 YP_002299652.1 identified by match to protein family HMM PF02558 match to protein family HMM TIGR00745 YP_002299653.1 identified by match to protein family HMM PF04286 YP_002299654.1 identified by match to protein family HMM PF00571 YP_002299655.1 identified by Glimmer2 putative YP_002299656.1 identified by match to protein family HMM PF01544 YP_002299657.1 contains CRISPR-associated protein DxTHG motif YP_002299658.1 identified by match to protein family HMM PF06707 YP_002299659.1 identified by match to protein family HMM PF00072 match to protein family HMM PF04545 match to protein family HMM TIGR02937 YP_002299660.1 identified by Glimmer2 putative YP_002299661.1 identified by match to protein family HMM PF04972 YP_002299663.1 PF00326 PF02897: Prolyl oligopeptidase, N-terminal beta-propeller; With a good score above the trusted cutoff and uncharacterized homologs YP_002299664.1 identified by match to protein family HMM PF04461 YP_002299665.1 identified by Glimmer2 putative YP_002299666.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_002299668.1 identified by Glimmer2 putative YP_002299670.1 [synonyms] ketopantoate hydroxymethyltransferase identified by match to protein family HMM PF01188 match to protein family HMM PF02746 YP_002299672.1 identified by match to protein family HMM PF05960 YP_002299673.1 identified by match to protein family HMM PF01839 match to protein family HMM PF07593 YP_002299675.1 identified by match to protein family HMM TIGR01552 YP_002299677.1 identified by match to protein family HMM PF00317 match to protein family HMM PF02867 match to protein family HMM TIGR02506 YP_002299680.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_002299681.1 [synonyms] ATP synt Hase C chain Lipid-binding protein YP_002299682.1 identified by match to protein family HMM TIGR02577 YP_002299683.1 identified by match to protein family HMM TIGR01888 YP_002299684.1 identified by match to protein family HMM PF03787 match to protein family HMM TIGR02580 YP_002299685.1 identified by match to protein family HMM TIGR01881 YP_002299686.1 Alternative gene symbol pat; identified by match to protein family HMM PF03787 match to protein family HMM TIGR01894 match to protein family HMM TIGR01898 YP_002299687.1 identified by match to protein family HMM TIGR02549 YP_002299688.1 identified by match to protein family HMM PF01867 match to protein family HMM TIGR00287 YP_002299689.1 identified by match to protein family HMM TIGR01573 YP_002299690.1 [synonyms] Long-chain acyl-CoA synthetase YP_002299691.1 identified by match to protein family HMM PF00583 YP_002299692.1 identified by match to protein family HMM PF01724 YP_002299693.1 identified by match to protein family HMM PF00326 match to protein family HMM PF02897 YP_002299694.1 [synonyms] Biotin synthesis protein bioH YP_002299696.1 identified by match to protein family HMM PF00268 YP_002299697.1 identified by match to protein family HMM PF00036 YP_002299699.1 [synonyms] Peroxisomal 2,4-dienoyl CoA reductase identified by match to protein family HMM PF00702 YP_002299700.1 GB PF02785: Biotin carboxylase C-terminal domain; PF00289: Carbamoyl-phosphate synt Hase L chain, N-terminal; With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF02548 match to protein family HMM TIGR00222 YP_002299701.1 identified by match to protein family HMM PF03776 match to protein family HMM TIGR01215 YP_002299702.1 identified by match to protein family HMM PF01656 match to protein family HMM TIGR01968 YP_002299703.1 identified by match to protein family HMM PF03775 match to protein family HMM PF05209 match to protein family HMM TIGR01222 YP_002299704.1 [Synonyms] Long-chain acyl-CoA synthetase Acyl-CoA synthetase YP_002299705.1 identified by match to protein family HMM PF02562 YP_002299706.1 TIGR00484 PF03764: Elongation factor G, domain IV; With a good score above the trusted cutoff and characterized homologs; identified by match to protein family HMM PF00056 match to protein family HMM PF02866 match to protein family HMM TIGR01771 YP_002299707.1 identified by match to protein family HMM PF02630 YP_002299708.1 identified by match to protein family HMM PF04314 YP_002299710.1 identified by Glimmer2 putative YP_002299711.1 identified by Glimmer2 putative YP_002299712.1 [synonyms] Protoheme ferro-lyase Heme synthetase identified by match to protein family HMM PF00430 YP_002299713.1 Gene symbol synonym catA; identified by match to protein family HMM PF00430 YP_002299714.1 Also called morphology and auto-aggregation control protein.Gene symbol synonyms: momR, mor; identified by match to protein family HMM PF02685 match to protein family HMM TIGR00749 YP_002299715.1 identified by match to protein family HMM PF00982 match to protein family HMM TIGR02400 YP_002299716.1 identified by Glimmer2 putative YP_002299717.1 identified by match to protein family HMM PF05013 YP_002299718.1 PF04285 identified by match to protein family HMM TIGR01764 YP_002299720.1 identified by match to protein family HMM PF00501 YP_002299721.1 identified by match to protein family HMM PF00378 YP_002299722.1 identified by Glimmer2 putative YP_002299723.1 identified by match to protein family HMM PF00593 match to protein family HMM PF07715 YP_002299724.1 identified by match to protein family HMM PF00561 YP_002299725.1 identified by match to protein family HMM PF00440 YP_002299726.1 identified by Glimmer2 putative YP_002299727.1 identified by match to protein family HMM PF01575 YP_002299728.1 identified by match to protein family HMM PF05853 YP_002299729.1 PF01556 Has uncharacterized homologs of the same identity; In a close position to other chaperonin genes in the same cluster; identified by match to protein family HMM PF00106 YP_002299730.1 [synonyms] Protein-disulfide reductase identified by match to protein family HMM PF00289 match to protein family HMM PF00364 match to protein family HMM PF02222 match to protein family HMM PF02785 match to protein family HMM PF02786 YP_002299732.1 identified by match to protein family HMM PF01039 YP_002299733.1 Part of the mhpRABCDEF operon.Contains PF01614: transcriptional regulator, IclR family, C-terminal domain; identified by match to protein family HMM PF00441 match to protein family HMM PF02770 match to protein family HMM PF02771 match to protein family HMM PF08028 YP_002299734.1 identified by Glimmer2 putative YP_002299735.1 Also called methyl-accepting chemotaxis receptor YP_002299736.1 identified by match to protein family HMM PF00009 match to protein family HMM PF00679 match to protein family HMM PF03144 match to protein family HMM PF03764 match to protein family HMM TIGR00231 match to protein family HMM TIGR00484 YP_002299737.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002299738.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_002299739.1 identified by Glimmer2 putative YP_002299740.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_002299741.1 identified by Glimmer2 putative YP_002299742.1 identified by match to protein family HMM PF00126 match to protein family HMM PF03466 YP_002299743.1 identified by match to protein family HMM PF01569 YP_002299745.1 [includes] Riboflavin kinase, FMN adenylyltransferase identified by match to protein family HMM PF06798 YP_002299746.1 identified by Glimmer2 putative YP_002299747.1 No HMMs, but Has several homologs With the identity of 'plasmid stability protein' non of which is characterized; identified by match to protein family HMM PF04293 YP_002299748.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_002299749.1 TIGR00077 identified by match to protein family HMM PF07044 YP_002299750.1 PF05193 PF00675: Insulinase (Peptidase family M16); With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF07992 YP_002299751.1 PF05193 With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF01590 match to protein family HMM PF07721 YP_002299752.1 identified by Glimmer2 putative YP_002299754.1 identified by match to protein family HMM PF00391 match to protein family HMM PF01326 match to protein family HMM PF02896 match to protein family HMM TIGR01418 YP_002299756.1 identified by match to protein family HMM PF00226 match to protein family HMM PF01556 YP_002299757.1 identified by match to protein family HMM PF00085 YP_002299758.1 Also called pyridoxamine 5'-phosphate oxidase YP_002299759.1 identified by match to protein family HMM PF00144 YP_002299762.1 identified by match to protein family HMM PF00015 match to protein family HMM PF00672 YP_002299764.1 identified by match to protein family HMM PF00156 match to protein family HMM TIGR00336 YP_002299765.1 Phosphoribosylglycinamide synthetase YP_002299766.1 Characterized L-allo-threonine aldolase.SP:O07051: L-allo-threonine aldolase (L-allo-TA)(L-allo-threonineacetaldehyde-lyase); identified by match to protein family HMM PF00587 match to protein family HMM PF03129 match to protein family HMM TIGR00442 YP_002299770.1 identified by match to protein family HMM PF00561 YP_002299771.1 identified by match to protein family HMM PF01575 YP_002299772.1 identified by match to protein family HMM PF01609 YP_002299773.1 identified by match to protein family HMM PF01687 match to protein family HMM PF06574 match to protein family HMM TIGR00083 YP_002299775.1 Also called Kdo transferase.Gene symbol synonym waaA YP_002299776.1 identified by Glimmer2 putative YP_002299777.1 PF05433Cloned and antibody Has been made to it; identified by match to protein family HMM PF01252 match to protein family HMM TIGR00077 YP_002299778.1 identified by Glimmer2 putative YP_002299779.1 identified by Glimmer2 putative YP_002299780.1 Has some homologs identified as Protein pmbA; PubMed PF01523: Putative modulator of DNA gyrase: tldD and pmbA were found to suppress mutations in letD and inhibitor of DNA gyrase; identified by match to protein family HMM PF05193 YP_002299782.1 Also called Helix-destabilizing protein.Gene symbol synonyms exrB, lexC YP_002299783.1 [Synonyms] Polyprenyl p-hydroxybenzoate decarboxylase identified by match to protein family HMM PF00342 YP_002299784.1 identified by match to protein family HMM PF00805 YP_002299785.1 identified by match to protein family HMM PF00383 YP_002299786.1 identified by match to protein family HMM PF01609 YP_002299787.1 identified by match to protein family HMM PF01243 YP_002299788.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_002299789.1 identified by match to protein family HMM PF03602 match to protein family HMM TIGR00095 YP_002299790.1 Modulator of DNA gyrase YP_002299791.1 Cytochrome c oxidase polypeptide II Cytochrome aa3 subunit 2 YP_002299792.1 Cytochrome c oxidase polypeptide I identified by match to protein family HMM PF01119 match to protein family HMM PF02518 match to protein family HMM TIGR00585 YP_002299793.1 Heme O synthase YP_002299794.1 identified by Glimmer2 putative YP_002299795.1 identified by match to protein family HMM PF01071 match to protein family HMM PF02843 match to protein family HMM PF02844 match to protein family HMM TIGR00877 YP_002299796.1 Cytochrome c oxidase polypeptide III identified by match to protein family HMM PF01212 YP_002299797.1 identified by match to protein family HMM PF03831 match to protein family HMM TIGR00686 YP_002299799.1 identified by Glimmer2 putative YP_002299800.1 identified by Glimmer2 putative YP_002299801.1 identified by Glimmer2 putative YP_002299802.1 identified by match to protein family HMM PF05899 YP_002299803.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_002299804.1 identified by match to protein family HMM PF02606 match to protein family HMM TIGR00682 YP_002299805.1 [synonyms] Acetylating enzyme for N-terminal of ribosomal protein S5 identified by match to protein family HMM PF04413 YP_002299807.1 identified by match to protein family HMM PF05433 YP_002299809.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine YP_002299810.1 identified by Glimmer2 putative YP_002299812.1 identified by match to protein family HMM TIGR01552 YP_002299813.1 identified by match to protein family HMM PF01977 match to protein family HMM TIGR00148 YP_002299815.1 identified by match to protein family HMM PF00903 YP_002299816.1 identified by Glimmer2 putative YP_002299817.1 identified by match to protein family HMM PF07690 YP_002299818.1 identified by match to protein family HMM PF04452 match to protein family HMM TIGR00046 YP_002299819.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_002299820.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_002299821.1 identified by match to protein family HMM PF00115 match to protein family HMM TIGR02891 YP_002299822.1 identified by match to protein family HMM PF00116 match to protein family HMM PF02790 match to protein family HMM TIGR02866 YP_002299823.1 [contains] Alpha-2-macroglobulin family N-terminal region identified by match to protein family HMM PF01040 match to protein family HMM TIGR01473 YP_002299825.1 [Synonyms] Multiple resistance and pH homeostasis protein A Mrp complex subunit A identified by match to protein family HMM PF04442 YP_002299826.1 [Synonyms] Multiple resistance and pH homeostasis protein B Mrp complex subunit B identified by match to protein family HMM PF00510 YP_002299827.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_002299828.1 [Synonyms] Multiple resistance and pH homeostasis protein D Mrp complex subunit D identified by match to protein family HMM PF02104 YP_002299829.1 [Synonyms] Multiple resistance and pH homeostasis protein E Mrp complex subunit E YP_002299830.1 [Synonyms] Multiple resistance and pH homeostasis protein F Mrp complex subunit F Sodium-cholate efflux protein mr PF YP_002299831.1 [Synonyms] Multiple resistance and pH homeostasis protein G Mrp complex subunit G YP_002299832.1 Gene symbol synonym cspS YP_002299833.1 identified by Glimmer2 putative YP_002299834.1 [SynonymsLong-chain acyl-CoA synthetase identified by match to protein family HMM PF00675 match to protein family HMM PF05193 YP_002299835.1 identified by match to protein family HMM PF00583 YP_002299836.1 identified by match to protein family HMM PF02622 YP_002299837.1 identified by match to protein family HMM PF00578 YP_002299839.1 Member of family DUF269, may be involved in nitrogen fixation, since they are found Within nitrogen fixation operons identified by match to protein family HMM PF00075 YP_002299840.1 identified by match to protein family HMM PF01636 match to protein family HMM TIGR00938 YP_002299841.1 in some organisms the NifE and NifN proteins are encoded separately; functions in assembly of FeMo cofactor; functions in assembly of nitrogenase MoFe YP_002299842.1 (Nitrogenase component I) identified by match to protein family HMM PF04012 YP_002299843.1 (Nitrogenase component I ) identified by match to protein family HMM PF04024 YP_002299844.1 nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis YP_002299845.1 identified by match to protein family HMM TIGR01552 YP_002299846.1 identified by match to protein family HMM PF02401 match to protein family HMM TIGR00216 YP_002299848.1 identified by match to protein family HMM PF01571 match to protein family HMM TIGR00528 YP_002299849.1 identified by match to protein family HMM PF01597 match to protein family HMM TIGR00527 YP_002299850.1 identified by match to protein family HMM PF02347 YP_002299853.1 identified by Glimmer2 putative YP_002299854.1 Most NifV-type homocitrate synthases are encoded within operons for nitrogen fixation; They are homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes; The homocit identified by match to protein family HMM PF01835 YP_002299855.1 identified by match to protein family HMM PF01699 match to protein family HMM TIGR00367 YP_002299856.1 fixA and fixB are paralogous to two electron transfer flavoprotein genes etfS, etfL identified by match to protein family HMM PF00361 YP_002299857.1 fixA and fixB are paralogous to two electron transfer flavoprotein genes etfS, etfL identified by match to protein family HMM PF04039 YP_002299858.1 identified by match to protein family HMM PF00420 YP_002299859.1 ferredoxin-like protein which may be involved in a redox process (electron transport) essential for nitrogenase activity identified by match to protein family HMM PF00361 YP_002299860.1 identified by match to protein family HMM PF01899 YP_002299861.1 Also called arsenical pump modifier; identified by match to protein family HMM PF04066 YP_002299862.1 identified by match to protein family HMM PF03334 match to protein family HMM TIGR01300 YP_002299863.1 identified by match to protein family HMM PF00313 match to protein family HMM PF08206 YP_002299865.1 identified by match to protein family HMM PF00501 YP_002299866.1 identified by match to protein family HMM PF01609 YP_002299869.1 identified by match to protein family HMM PF05082 YP_002299870.1 identified by match to protein family HMM PF03270 YP_002299871.1 PF01244 Has many uncharacterized homologs With this identity; identified by match to protein family HMM PF02579 match to protein family HMM TIGR02663 YP_002299872.1 identified by match to protein family HMM PF00148 match to protein family HMM TIGR01283 match to protein family HMM TIGR01285 YP_002299873.1 identified by match to protein family HMM PF00148 match to protein family HMM TIGR01286 YP_002299874.1 identified by match to protein family HMM PF00148 match to protein family HMM TIGR01282 match to protein family HMM TIGR01862 YP_002299875.1 identified by match to protein family HMM PF00142 match to protein family HMM TIGR01287 YP_002299876.1 Adenosine aminohydrolase YP_002299877.1 identified by Glimmer2 putative YP_002299879.1 identified by match to protein family HMM PF04319 YP_002299880.1 identified by match to protein family HMM PF06988 match to protein family HMM TIGR02934 YP_002299881.1 identified by match to protein family HMM PF00037 YP_002299882.1 identified by match to protein family HMM PF02579 match to protein family HMM PF04055 match to protein family HMM TIGR01290 YP_002299883.1 identified by match to protein family HMM PF00158 match to protein family HMM PF01590 match to protein family HMM PF02954 match to protein family HMM PF07728 match to protein family HMM TIGR01817 YP_002299885.1 identified by match to protein family HMM PF00682 match to protein family HMM TIGR02660 YP_002299886.1 identified by match to protein family HMM PF03206 YP_002299887.1 identified by match to protein family HMM PF01012 YP_002299888.1 identified by match to protein family HMM PF00766 match to protein family HMM PF01012 YP_002299889.1 identified by match to protein family HMM PF01266 match to protein family HMM PF01494 match to protein family HMM PF03486 YP_002299891.1 Gene symbol synonyms YP_002299892.1 identified by match to protein family HMM PF03960 match to protein family HMM TIGR00014 YP_002299894.1 identified by match to protein family HMM PF00196 match to protein family HMM PF07719 match to protein family HMM PF07721 YP_002299895.1 identified by match to protein family HMM PF01968 match to protein family HMM PF05378 YP_002299896.1 identified by match to protein family HMM PF06032 YP_002299897.1 identified by match to protein family HMM PF00593 match to protein family HMM PF07715 YP_002299898.1 identified by match to protein family HMM PF01968 match to protein family HMM PF05378 YP_002299899.1 identified by match to protein family HMM PF02538 YP_002299900.1 identified by match to protein family HMM PF07883 YP_002299901.1 identified by match to protein family HMM PF01266 YP_002299902.1 Contains PF00072 identified by match to protein family HMM PF01244 YP_002299903.1 Contains TIGR01730 identified by match to protein family HMM PF00881 match to protein family HMM TIGR02476 YP_002299904.1 Gene name synonym acrE.Also called Hydrophobe YP_002299906.1 identified by Glimmer2 putative YP_002299907.1 identified by Glimmer2 putative YP_002299908.1 identified by match to protein family HMM PF00962 YP_002299910.1 identified by Glimmer2 putative YP_002299911.1 identified by match to protein family HMM PF00512 match to protein family HMM PF00989 match to protein family HMM PF02518 match to protein family HMM TIGR00229 YP_002299913.1 Gene symbol synonym flaK.Located on cell exterior; identified by match to protein family HMM PF00529 YP_002299914.1 identified by Glimmer2 putative YP_002299915.1 identified by match to protein family HMM PF01061 YP_002299916.1 HAP1 first hook-filament junction protein cell exterior YP_002299917.1 identified by Glimmer2 putative YP_002299918.1 identified by match to protein family HMM PF00528 YP_002299919.1 identified by match to protein family HMM PF00005 match to protein family HMM PF03459 YP_002299920.1 Rod protein transmission shaft periplasmic space; identified by match to protein family HMM PF07690 YP_002299921.1 identified by match to protein family HMM PF01547 YP_002299923.1 identified by match to protein family HMM PF00593 match to protein family HMM PF07715 YP_002299924.1 identified by match to protein family HMM PF01980 match to protein family HMM TIGR00104 YP_002299925.1 identified by match to protein family HMM PF00593 match to protein family HMM PF07715 YP_002299926.1 [Synonyms] Sialic acid synt Hase identified by match to protein family HMM PF01497 YP_002299927.1 identified by Glimmer2 putative YP_002299928.1 identified by Glimmer2 putative YP_002299929.1 identified by match to protein family HMM PF02195 match to protein family HMM TIGR00180 YP_002299930.1 identified by match to protein family HMM PF01656 YP_002299932.1 Also called dTDP-4-keto-6-deoxyglucose 3,5-epimerase, dTDP-L-rhamnose synthetase.Gene symbol synonym rmlC; identified by match to protein family HMM PF00893 YP_002299933.1 identified by match to protein family HMM PF00512 match to protein family HMM PF00672 match to protein family HMM PF02518 YP_002299934.1 Part of an rfb operon; identified by match to protein family HMM PF00072 match to protein family HMM PF00486 YP_002299935.1 Part of an rfb operon, see SP identified by match to protein family HMM PF00529 match to protein family HMM TIGR01730 YP_002299936.1 identified by match to protein family HMM PF00873 match to protein family HMM TIGR00915 YP_002299937.1 identified by match to protein family HMM PF02321 match to protein family HMM TIGR01845 YP_002299940.1 identified by Glimmer2 putative YP_002299941.1 identified by match to protein family HMM PF00534 YP_002299943.1 Contains PF00027 YP_002299945.1 identified by match to protein family HMM PF00460 match to protein family HMM PF06429 YP_002299946.1 identified by Glimmer2 putative YP_002299947.1 identified by Glimmer2 putative YP_002299948.1 identified by Glimmer2 putative YP_002299949.1 identified by Glimmer2 putative YP_002299950.1 identified by Glimmer2 putative YP_002299951.1 identified by Glimmer2 putative YP_002299952.1 identified by match to protein family HMM PF06748 YP_002299953.1 identified by match to protein family HMM PF01973 YP_002299954.1 identified by match to protein family HMM PF02348 YP_002299955.1 identified by match to protein family HMM PF00171 YP_002299956.1 identified by Glimmer2 putative YP_002299957.1 identified by match to protein family HMM PF00106 match to protein family HMM PF01370 match to protein family HMM PF07993 YP_002299958.1 identified by match to protein family HMM PF01354 match to protein family HMM PF03102 YP_002299960.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity YP_002299961.1 identified by match to protein family HMM PF04989 YP_002299962.1 PF03061 identified by match to protein family HMM PF01370 YP_002299964.1 identified by match to protein family HMM PF00908 match to protein family HMM TIGR01221 YP_002299966.1 identified by match to protein family HMM PF01370 match to protein family HMM PF04321 match to protein family HMM PF07993 match to protein family HMM TIGR02622 YP_002299967.1 Contains Sigma-70 region 2 and Sigma-70 region 4, see PF04542 identified by match to protein family HMM PF00483 match to protein family HMM TIGR02623 YP_002299968.1 identified by match to protein family HMM PF00310 match to protein family HMM PF00733 match to protein family HMM TIGR01536 YP_002299969.1 identified by Glimmer2 putative YP_002299970.1 identified by match to protein family HMM PF00211 YP_002299972.1 identified by Glimmer2 putative YP_002299973.1 identified by match to protein family HMM PF02624 match to protein family HMM TIGR00702 YP_002299974.1 identified by match to protein family HMM PF07812 YP_002299975.1 identified by match to protein family HMM PF00027 YP_002299976.1 identified by match to protein family HMM PF00005 match to protein family HMM PF00664 YP_002299977.1 contains VCBS repeat and putative Ig domain YP_002299979.1 Also called methyl-accepting chemotaxis receptor YP_002299983.1 [Synonyms] Cytochrome c peroxidase YP_002299984.1 identified by Glimmer2 putative YP_002299985.1 identified by Glimmer2 putative YP_002299986.1 identified by Glimmer2 putative YP_002299987.1 Also called methyl-accepting chemotaxis receptor YP_002299989.1 identified by match to protein family HMM PF01073 match to protein family HMM PF01370 match to protein family HMM PF04321 match to protein family HMM PF07993 YP_002299990.1 identified by match to protein family HMM PF00512 match to protein family HMM PF01590 match to protein family HMM PF02518 YP_002299991.1 identified by match to protein family HMM TIGR02317 YP_002299992.1 identified by match to protein family HMM PF00285 match to protein family HMM TIGR01800 YP_002299993.1 identified by match to protein family HMM PF03972 YP_002299994.1 identified by Glimmer2 putative YP_002299995.1 identified by match to protein family HMM PF03061 YP_002299996.1 Also matches to Co YP_002299997.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002299998.1 identified by match to protein family HMM PF04773 YP_002299999.1 identified by match to protein family HMM PF00196 match to protein family HMM PF04542 match to protein family HMM PF04545 match to protein family HMM TIGR02937 YP_002300000.1 identified by match to protein family HMM PF00753 match to protein family HMM PF07521 YP_002300001.1 Contains Sigma-70 region 2 and Sigma-70 region 4, see PF04542 YP_002300003.1 Gene name synonym hfq.Also called nif regulatory factor YP_002300005.1 identified by match to protein family HMM PF02163 YP_002300006.1 Contains PF00027 YP_002300008.1 identified by match to protein family HMM PF02321 YP_002300009.1 identified by match to protein family HMM PF02012 match to protein family HMM PF05345 match to protein family HMM TIGR01965 YP_002300011.1 identified by match to protein family HMM PF00015 match to protein family HMM PF07238 YP_002300014.1 identified by match to protein family HMM PF00484 YP_002300015.1 identified by match to protein family HMM PF03150 YP_002300018.1 Sensory box protein.Gene symbol synonym air YP_002300019.1 identified by match to protein family HMM PF00015 match to protein family HMM PF00672 YP_002300020.1 Gene symbol synonym identified by match to protein family HMM PF01618 match to protein family HMM TIGR02797 YP_002300021.1 identified by match to protein family HMM PF02472 match to protein family HMM TIGR02803 YP_002300022.1 identified by match to protein family HMM PF03544 match to protein family HMM TIGR01352 YP_002300023.1 identified by Glimmer2 putative YP_002300024.1 identified by Glimmer2 putative YP_002300025.1 identified by match to protein family HMM PF00005 YP_002300026.1 identified by match to protein family HMM PF00593 match to protein family HMM PF07715 YP_002300028.1 identified by match to protein family HMM PF01545 match to protein family HMM TIGR01297 YP_002300029.1 [Synonyms] L-threonine-O-3-phosphate decarboxylase identified by match to protein family HMM PF04055 match to protein family HMM PF06969 YP_002300030.1 identified by match to protein family HMM PF06228 YP_002300031.1 identified by Glimmer2 putative YP_002300032.1 Contains EAL domain and GGDEF domain YP_002300033.1 Name variations include MCP methyltransferase YP_002300034.1 identified by Glimmer2 putative YP_002300035.1 identified by Glimmer2 putative YP_002300036.1 Contains PF00990 YP_002300038.1 identified by match to protein family HMM PF01292 YP_002300039.1 identified by Glimmer2 putative YP_002300040.1 Contains TIGR01730 identified by match to protein family HMM PF00581 YP_002300041.1 Gene symbol synonym envD.Part of the acrEF operon; identified by match to protein family HMM PF02566 YP_002300042.1 [synonyms] Glucose dehydrogenase (pyrroloquinoline-quinone) identified by match to protein family HMM PF03595 YP_002300043.1 Gene symbol synonym air; identified by match to protein family HMM PF02633 YP_002300044.1 identified by match to protein family HMM PF00593 match to protein family HMM PF07715 match to protein family HMM TIGR01785 match to protein family HMM TIGR01786 YP_002300045.1 Gene symbol synonym air YP_002300046.1 identified by Glimmer2 putative YP_002300047.1 identified by match to protein family HMM PF01497 YP_002300048.1 identified by Glimmer2 putative YP_002300049.1 identified by match to protein family HMM PF00005 YP_002300050.1 identified by Glimmer2 putative YP_002300051.1 identified by Glimmer2 putative YP_002300052.1 identified by match to protein family HMM PF01547 match to protein family HMM TIGR00971 YP_002300053.1 Gene symbol synonym acrE; identified by match to protein family HMM PF00528 match to protein family HMM TIGR00969 match to protein family HMM TIGR02139 YP_002300054.1 Part of the acrEF operon.Gene symbol synonym: envC Contains TIGR01730: efflux transporter RND family, MFP subunit; identified by match to protein family HMM PF00528 match to protein family HMM TIGR00969 match to protein family HMM TIGR02140 YP_002300055.1 identified by match to protein family HMM PF00005 match to protein family HMM PF03459 match to protein family HMM TIGR00968 YP_002300058.1 Contains Sigma-70 region 2 and Sigma-70 region 4, see PF04542 identified by match to protein family HMM PF00593 match to protein family HMM PF07715 YP_002300059.1 identified by Glimmer2 putative YP_002300060.1 [contains] type I secretion target GGXGXDXXX repeat [contains] Cadherin domain identified by match to protein family HMM PF00005 YP_002300061.1 identified by match to protein family HMM PF00155 YP_002300062.1 possibly a Cu chaperone YP_002300064.1 part of the nosDFYL tatE operon structure identified by match to protein family HMM PF00563 match to protein family HMM PF00990 match to protein family HMM TIGR00254 YP_002300065.1 identified by match to protein family HMM PF01339 match to protein family HMM PF01739 match to protein family HMM PF03705 YP_002300066.1 reduces nitrous oxide to nitrogen YP_002300068.1 identified by Glimmer2 putative YP_002300070.1 identified by match to protein family HMM PF01047 YP_002300072.1 identified by match to protein family HMM PF00873 match to protein family HMM TIGR00915 YP_002300073.1 identified by match to protein family HMM PF00529 match to protein family HMM TIGR01730 YP_002300074.1 identified by match to protein family HMM PF01011 YP_002300075.1 identified by match to protein family HMM PF00015 match to protein family HMM PF00989 match to protein family HMM TIGR00229 YP_002300076.1 [Synonyms] Soluble cytochrome f Cytochrome c553 Cytochrome c-553 Cytochrome c-552 YP_002300077.1 identified by match to protein family HMM PF00015 match to protein family HMM PF00672 match to protein family HMM PF00989 match to protein family HMM TIGR00229 YP_002300079.1 identified by match to protein family HMM PF00593 match to protein family HMM PF07715 match to protein family HMM TIGR01783 YP_002300081.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile YP_002300082.1 identified by Glimmer2 putative YP_002300083.1 Variable homologs but mostly proteases; TIGR shows homology With trypsin YP_002300084.1 [Synonyms] Citrase beta chain Citrate (pro-3S)-lyase beta chain Citryl-CoA lyase subunit YP_002300085.1 [Synonyms] PM kinase identified by match to protein family HMM PF00873 match to protein family HMM TIGR00915 YP_002300086.1 identified by Glimmer2 putative YP_002300087.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_002300089.1 identified by Glimmer2 putative YP_002300090.1 identified by match to protein family HMM PF04542 match to protein family HMM PF04545 match to protein family HMM TIGR02937 YP_002300091.1 identified by match to protein family HMM PF00028 match to protein family HMM PF00353 YP_002300093.1 Synonym identified by match to protein family HMM PF02424 match to protein family HMM TIGR01409 YP_002300094.1 identified by match to protein family HMM PF05573 YP_002300095.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_002300096.1 identified by match to protein family HMM PF00005 YP_002300097.1 identified by Glimmer2 putative YP_002300098.1 identified by match to protein family HMM PF00116 match to protein family HMM TIGR01409 YP_002300099.1 identified by match to protein family HMM PF04205 YP_002300101.1 Contains PF02518 identified by match to protein family HMM PF00989 match to protein family HMM PF07536 match to protein family HMM TIGR00229 YP_002300103.1 identified by match to protein family HMM PF04333 YP_002300105.1 identified by match to protein family HMM PF01042 YP_002300106.1 identified by match to protein family HMM PF00593 match to protein family HMM PF07715 YP_002300107.1 identified by match to protein family HMM PF01266 match to protein family HMM PF01593 YP_002300108.1 identified by match to protein family HMM PF00034 YP_002300109.1 identified by match to protein family HMM PF00989 match to protein family HMM PF00990 match to protein family HMM TIGR00229 match to protein family HMM TIGR00254 YP_002300110.1 identified by match to protein family HMM PF07992 YP_002300111.1 Also matched to PF03401 identified by match to protein family HMM PF04357 YP_002300112.1 identified by match to protein family HMM PF01103 match to protein family HMM PF07244 YP_002300113.1 identified by match to protein family HMM PF01048 match to protein family HMM TIGR01717 YP_002300114.1 identified by Glimmer2 putative YP_002300115.1 identified by match to protein family HMM PF00089 YP_002300116.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_002300117.1 identified by match to protein family HMM TIGR00687 YP_002300119.1 identified by match to protein family HMM PF01118 match to protein family HMM PF02774 match to protein family HMM TIGR01296 YP_002300122.1 identified by match to protein family HMM PF00805 YP_002300123.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_002300124.1 identified by Glimmer2 putative YP_002300125.1 identified by match to protein family HMM PF01127 match to protein family HMM TIGR02970 YP_002300126.1 identified by match to protein family HMM PF01127 match to protein family HMM TIGR02968 YP_002300127.1 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase identified by match to protein family HMM PF00890 match to protein family HMM PF02910 match to protein family HMM TIGR01812 match to protein family HMM TIGR01816 YP_002300128.1 identified by match to protein family HMM PF00111 match to protein family HMM TIGR00384 YP_002300130.1 contains cyclic nucleotide-binding domain identified by match to protein family HMM PF00106 match to protein family HMM PF01370 YP_002300131.1 identified by match to protein family HMM PF04279 YP_002300132.1 identified by Glimmer2 putative YP_002300133.1 identified by match to protein family HMM PF02518 YP_002300134.1 [Synonym] Cytochrome c552 identified by match to protein family HMM PF00108 match to protein family HMM PF02803 match to protein family HMM TIGR01930 YP_002300135.1 identified by Glimmer2 putative YP_002300136.1 identified by match to protein family HMM PF00293 YP_002300137.1 identified by match to protein family HMM PF00892 YP_002300139.1 identified by match to protein family HMM PF04055 YP_002300140.1 [Synonyms] dTDP-4-keto-6-deoxyglucose 3,5-epimerase dTDP-L-rhamnose synthetase identified by match to protein family HMM PF07396 YP_002300141.1 Part of a rfb operon; identified by match to protein family HMM PF03167 match to protein family HMM TIGR00758 YP_002300142.1 identified by match to protein family HMM PF00106 YP_002300143.1 identified by Glimmer2 putative YP_002300144.1 identified by match to protein family HMM PF01970 YP_002300145.1 identified by match to protein family HMM PF07331 YP_002300146.1 identified by Glimmer2 putative YP_002300147.1 identified by match to protein family HMM PF00180 match to protein family HMM TIGR00169 YP_002300148.1 identified by match to protein family HMM PF00583 YP_002300150.1 identified by match to protein family HMM PF00300 match to protein family HMM TIGR01258 YP_002300152.1 Contains PF02518 identified by match to protein family HMM PF03969 YP_002300153.1 identified by match to protein family HMM PF00583 YP_002300154.1 PF00353 identified by match to protein family HMM PF01964 match to protein family HMM TIGR00190 YP_002300156.1 identified by match to protein family HMM PF00117 match to protein family HMM PF00958 match to protein family HMM PF06508 match to protein family HMM TIGR00884 match to protein family HMM TIGR00888 YP_002300157.1 identified by match to protein family HMM PF00583 YP_002300158.1 identified by match to protein family HMM PF01814 YP_002300159.1 identified by match to protein family HMM PF00106 YP_002300160.1 identified by Glimmer2 putative YP_002300161.1 identified by Glimmer2 putative YP_002300162.1 identified by match to protein family HMM PF05940 YP_002300164.1 identified by match to protein family HMM PF00593 match to protein family HMM PF07715 YP_002300166.1 PF00535 With a good score above the trusted cutoff and characterized homologs; identified by match to protein family HMM PF00034 YP_002300167.1 identified by Glimmer2 putative YP_002300168.1 identified by match to protein family HMM PF01266 YP_002300169.1 identified by match to protein family HMM PF00106 match to protein family HMM PF01073 match to protein family HMM PF01370 match to protein family HMM PF07993 YP_002300171.1 identified by Glimmer2 putative YP_002300172.1 identified by Glimmer2 putative YP_002300173.1 identified by Glimmer2 putative YP_002300174.1 identified by Glimmer2 putative YP_002300175.1 identified by Glimmer2 putative YP_002300176.1 identified by match to protein family HMM PF01073 match to protein family HMM PF01370 match to protein family HMM PF04321 YP_002300177.1 identified by match to protein family HMM PF04892 YP_002300178.1 identified by Glimmer2 putative YP_002300179.1 identified by match to protein family HMM PF02585 YP_002300180.1 identified by match to protein family HMM PF00483 YP_002300181.1 Also matched to NAD-dependent epimerase YP_002300182.1 Alternate name; Gene symbol synonyms: rfbD, noeL; identified by match to protein family HMM TIGR01444 YP_002300183.1 Gene symbol synonym wcaG.Alternate name: GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase identified by match to protein family HMM PF02518 YP_002300184.1 identified by Glimmer2 putative YP_002300185.1 SynonymGalactowaldenase identified by match to protein family HMM PF00028 match to protein family HMM PF00353 match to protein family HMM PF00413 YP_002300186.1 identified by match to protein family HMM PF02397 match to protein family HMM TIGR03023 match to protein family HMM TIGR03025 YP_002300188.1 identified by match to protein family HMM PF02563 YP_002300189.1 identified by match to protein family HMM PF00534 YP_002300190.1 Gene symbol synonyms YP_002300191.1 identified by Glimmer2 putative YP_002300192.1 identified by match to protein family HMM PF00534 YP_002300193.1 identified by match to protein family HMM PF00534 YP_002300194.1 identified by match to protein family HMM PF00535 YP_002300195.1 identified by match to protein family HMM TIGR01444 YP_002300196.1 identified by match to protein family HMM PF01073 match to protein family HMM PF01370 match to protein family HMM PF01408 match to protein family HMM PF04321 match to protein family HMM PF07993 YP_002300198.1 identified by match to protein family HMM PF00535 YP_002300205.1 DNA-binding response regulator YP_002300208.1 Contains PF02518 identified by match to protein family HMM PF00534 YP_002300209.1 identified by match to protein family HMM PF00310 match to protein family HMM PF00733 match to protein family HMM TIGR01536 YP_002300210.1 Also called methyl-accepting chemotaxis receptor YP_002300211.1 Possible gene symbols identified by match to protein family HMM PF01370 match to protein family HMM PF04321 match to protein family HMM TIGR01472 YP_002300212.1 type III RuBisCO; involved in carbon fixation YP_002300214.1 [synonyms] Pentose-5-phosphate 3-epimerase identified by match to protein family HMM PF00106 match to protein family HMM PF01073 match to protein family HMM PF01370 match to protein family HMM PF02719 match to protein family HMM PF04321 match to protein family HMM PF07993 match to protein family HMM TIGR01179 YP_002300215.1 identified by match to protein family HMM PF07883 YP_002300216.1 identified by match to protein family HMM PF08173 match to protein family HMM TIGR02106 YP_002300217.1 Phosphopentokinase 1 identified by match to protein family HMM PF02322 match to protein family HMM TIGR00203 YP_002300218.1 identified by match to protein family HMM PF01654 YP_002300219.1 identified by match to protein family HMM PF00005 match to protein family HMM TIGR02857 YP_002300220.1 identified by match to protein family HMM PF00005 YP_002300222.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_002300223.1 Gene symbol synonym rmlD; identified by match to protein family HMM PF00245 match to protein family HMM TIGR01409 YP_002300224.1 Part of an rfb operon YP_002300226.1 identified by match to protein family HMM PF00255 YP_002300227.1 identified by match to protein family HMM PF03061 match to protein family HMM TIGR00369 YP_002300228.1 identified by match to protein family HMM PF07045 YP_002300229.1 identified by Glimmer2 putative YP_002300230.1 identified by Glimmer2 putative YP_002300231.1 identified by match to protein family HMM PF00529 YP_002300232.1 [contains] PRC1_-barrel domain identified by Glimmer2 putative YP_002300234.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine YP_002300235.1 identified by match to protein family HMM PF00072 match to protein family HMM PF00486 YP_002300236.1 synonym identified by match to protein family HMM PF00072 match to protein family HMM PF01966 YP_002300237.1 dual function enzyme catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate YP_002300238.1 identified by match to protein family HMM PF00072 match to protein family HMM PF00512 match to protein family HMM PF00989 match to protein family HMM PF02518 match to protein family HMM TIGR00229 YP_002300239.1 PF00326 PF02129: X-Pro dipeptidyl-peptidase (S15 family); With a good score above the trusted cutoff and uncharacterized homologs; identified by match to protein family HMM PF00072 YP_002300240.1 identified by match to protein family HMM PF00015 match to protein family HMM PF00672 YP_002300241.1 identified by match to protein family HMM PF00126 match to protein family HMM PF03466 YP_002300242.1 identified by Glimmer2 putative YP_002300243.1 identified by match to protein family HMM PF00101 YP_002300244.1 Also called methyl-accepting chemotaxis receptor YP_002300245.1 identified by match to protein family HMM PF00004 match to protein family HMM TIGR02880 YP_002300246.1 identified by match to protein family HMM PF00316 YP_002300247.1 identified by Glimmer2 putative YP_002300248.1 identified by match to protein family HMM PF00456 match to protein family HMM PF02779 match to protein family HMM PF02780 match to protein family HMM TIGR00232 YP_002300249.1 identified by match to protein family HMM PF01116 match to protein family HMM TIGR00167 match to protein family HMM TIGR01521 YP_002300250.1 identified by match to protein family HMM PF00702 match to protein family HMM TIGR01449 match to protein family HMM TIGR01509 match to protein family HMM TIGR01549 YP_002300251.1 identified by match to protein family HMM PF00702 match to protein family HMM TIGR01509 YP_002300252.1 identified by match to protein family HMM PF02222 match to protein family HMM TIGR01142 YP_002300253.1 identified by match to protein family HMM PF01073 match to protein family HMM PF01370 match to protein family HMM PF04321 match to protein family HMM PF07993 match to protein family HMM TIGR01214 YP_002300254.1 identified by match to protein family HMM PF00908 match to protein family HMM TIGR01221 YP_002300255.1 [Synonym] Cytochrome c biogenesis protein tlpA identified by match to protein family HMM PF00535 YP_002300256.1 identified by Glimmer2 putative YP_002300257.1 identified by Glimmer2 putative YP_002300258.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA YP_002300259.1 identified by Glimmer2 putative YP_002300260.1 SynonymsetfL Has paralog fixB YP_002300261.1 SynonymsetfS Has paralog fixA identified by match to protein family HMM PF00056 match to protein family HMM PF02866 match to protein family HMM TIGR01763 YP_002300262.1 identified by match to protein family HMM PF05239 YP_002300263.1 identified by Glimmer2 putative YP_002300264.1 identified by match to protein family HMM PF00561 match to protein family HMM TIGR01392 YP_002300265.1 identified by match to protein family HMM PF01817 YP_002300266.1 PF00749 With a good score above the trusted cutoff and characterized homologs; identified by match to protein family HMM PF00155 match to protein family HMM PF00266 match to protein family HMM TIGR01141 YP_002300267.1 identified by Glimmer2 putative YP_002300268.1 identified by match to protein family HMM PF03330 match to protein family HMM TIGR00413 YP_002300269.1 identified by match to protein family HMM PF00326 match to protein family HMM PF01738 match to protein family HMM PF02129 YP_002300271.1 PF02600 identified by match to protein family HMM PF01609 YP_002300273.1 Contains Sigma-70 region 2 and Sigma-70 region 4, see PF04542 identified by match to protein family HMM PF04752 YP_002300274.1 identified by match to protein family HMM PF00015 match to protein family HMM PF00672 match to protein family HMM PF05227 YP_002300275.1 identified by match to protein family HMM PF02867 match to protein family HMM TIGR01443 match to protein family HMM TIGR01445 match to protein family HMM TIGR02504 YP_002300276.1 identified by Glimmer2 putative