-- dump date 20140620_032620 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 258594000001 SEQ_END SEQ_END NC_005296.1 5459213 5459213 DR NC_005296.1; contig end 5459213..5459213 Rhodopseudomonas palustris CGA009 258594000002 SEQ_END SEQ_END NC_005297.1 8427 8427 DR NC_005297.1; contig end 8427..8427 Rhodopseudomonas palustris CGA009 NP_945357.1 CDS dnaA NC_005296.1 679 2097 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 679..2097 Rhodopseudomonas palustris CGA009 2692819 NP_945358.1 CDS dnaN NC_005296.1 2332 3450 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2332..3450 Rhodopseudomonas palustris CGA009 2692805 NP_945359.1 CDS recF NC_005296.1 3667 4833 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3667..4833 Rhodopseudomonas palustris CGA009 2692846 NP_945360.1 CDS gyrB NC_005296.1 5050 7491 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 5050..7491 Rhodopseudomonas palustris CGA009 2689404 NP_945361.1 CDS hpd NC_005296.1 7673 8791 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 4-hydroxyphenylpyruvate dioxygenase complement(7673..8791) Rhodopseudomonas palustris CGA009 2692849 NP_945362.1 CDS RPA0006 NC_005296.1 8917 9396 D AsnC family transcriptional regulator 8917..9396 Rhodopseudomonas palustris CGA009 2689407 NP_945363.1 CDS RPA0007 NC_005296.1 9442 10893 R signal transduction histidine kinase complement(9442..10893) Rhodopseudomonas palustris CGA009 2689170 NP_945364.1 CDS kaiB NC_005296.1 10890 11174 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; circadian clock protein complement(10890..11174) Rhodopseudomonas palustris CGA009 2689455 NP_945365.1 CDS kaiC NC_005296.1 11184 12875 R acts as a promotor non-specific transcription repressor; circadian clock protein KaiC complement(11184..12875) Rhodopseudomonas palustris CGA009 2692834 NP_945366.1 CDS RPA0010 NC_005296.1 13269 13778 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glutamate uptake transcriptional regulator complement(13269..13778) Rhodopseudomonas palustris CGA009 2693141 NP_945367.1 CDS RPA0011 NC_005296.1 14266 14514 R hypothetical protein complement(14266..14514) Rhodopseudomonas palustris CGA009 2689327 NP_945368.1 CDS rdxS NC_005296.1 14516 14701 R cytochrome oxidase maturation protein complement(14516..14701) Rhodopseudomonas palustris CGA009 2689428 NP_945369.1 CDS rdxI NC_005296.1 14692 16890 R cation (heavy metal) transporting ATPase complement(14692..16890) Rhodopseudomonas palustris CGA009 2689585 NP_945370.1 CDS rdxH NC_005296.1 16925 17428 R FixH family protein complement(16925..17428) Rhodopseudomonas palustris CGA009 2691657 NP_945371.1 CDS fixG NC_005296.1 17445 18902 R 4Fe-4S ferredoxin complement(17445..18902) Rhodopseudomonas palustris CGA009 2689294 NP_945372.1 CDS ccoP NC_005296.1 19019 19900 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cytochrome c oxidase cbb3-type subunit III complement(19019..19900) Rhodopseudomonas palustris CGA009 2688788 NP_945373.1 CDS ccoQ NC_005296.1 19908 20072 R cbb3-type cytochrome oxidase subunit complement(19908..20072) Rhodopseudomonas palustris CGA009 2689239 NP_945374.1 CDS ccoO NC_005296.1 20082 20816 R CcoO; FixO; cbb3-type cytochrome c oxidase subunit II complement(20082..20816) Rhodopseudomonas palustris CGA009 2689596 NP_945375.1 CDS ccoN NC_005296.1 20829 22475 R CcoN; FixN; cbb3-type cytochrome c oxidase subunit I complement(20829..22475) Rhodopseudomonas palustris CGA009 2689417 NP_945376.1 CDS panE1 NC_005296.1 22786 23706 R catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase complement(22786..23706) Rhodopseudomonas palustris CGA009 2692940 NP_945377.1 CDS RPA0021 NC_005296.1 23779 24516 R short-chain dehydrogenase/reductase SDR complement(23779..24516) Rhodopseudomonas palustris CGA009 2692906 NP_945378.1 CDS RPA0022 NC_005296.1 24637 25239 R DSBA oxidoreductase complement(24637..25239) Rhodopseudomonas palustris CGA009 2692758 NP_945379.1 CDS gstA3 NC_005296.1 25362 26123 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glutathione transferase 25362..26123 Rhodopseudomonas palustris CGA009 2692783 NP_945380.1 CDS RPA0024 NC_005296.1 26235 27110 R short chain dehydrogenase complement(26235..27110) Rhodopseudomonas palustris CGA009 2692664 NP_945381.1 CDS ggt1 NC_005296.1 27385 29118 R gamma-glutamyltransferase complement(27385..29118) Rhodopseudomonas palustris CGA009 2692845 NP_945382.1 CDS RPA0026 NC_005296.1 29224 30621 D major facilitator transporter 29224..30621 Rhodopseudomonas palustris CGA009 2691512 NP_945383.1 CDS aroG1 NC_005296.1 30837 31931 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 30837..31931 Rhodopseudomonas palustris CGA009 2689152 NP_945384.1 CDS purH NC_005296.1 31989 33581 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(31989..33581) Rhodopseudomonas palustris CGA009 2692630 NP_945385.1 CDS RPA0029 NC_005296.1 33767 35653 R heparinase II/III-like complement(33767..35653) Rhodopseudomonas palustris CGA009 2692527 NP_945386.1 CDS RPA0030 NC_005296.1 35820 37172 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Sun/ nucleolar Nop1/Nop2 complement(35820..37172) Rhodopseudomonas palustris CGA009 2692350 NP_945387.1 CDS RPA0031 NC_005296.1 37325 37543 D hypothetical protein 37325..37543 Rhodopseudomonas palustris CGA009 2692486 NP_945388.1 CDS RPA0032 NC_005296.1 37629 38204 D nuclease-like protein 37629..38204 Rhodopseudomonas palustris CGA009 2692354 NP_945389.1 CDS RPA0033 NC_005296.1 38208 39092 R hypothetical protein complement(38208..39092) Rhodopseudomonas palustris CGA009 2692249 NP_945390.1 CDS RPA0034 NC_005296.1 39440 40897 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; twin-arginine translocation pathway signal 39440..40897 Rhodopseudomonas palustris CGA009 2692165 NP_945391.1 CDS pheT NC_005296.1 40904 43315 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(40904..43315) Rhodopseudomonas palustris CGA009 2692122 NP_945392.1 CDS RPA0036 NC_005296.1 43460 43939 R hypothetical protein complement(43460..43939) Rhodopseudomonas palustris CGA009 2692069 NP_945393.1 CDS pheS NC_005296.1 44200 45282 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(44200..45282) Rhodopseudomonas palustris CGA009 2692030 NP_945394.1 CDS rplT NC_005296.1 45426 45785 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(45426..45785) Rhodopseudomonas palustris CGA009 2691859 NP_945395.1 CDS rpmI NC_005296.1 45869 46069 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 50S ribosomal protein L35 complement(45869..46069) Rhodopseudomonas palustris CGA009 2689066 NP_945396.1 CDS infC NC_005296.1 46403 46981 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(46403..46981) Rhodopseudomonas palustris CGA009 2691263 NP_945397.1 CDS RPA0041 NC_005296.1 47263 48048 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 47263..48048 Rhodopseudomonas palustris CGA009 2691205 NP_945398.1 CDS RPA0042 NC_005296.1 48211 49323 R 4Fe-4S ferredoxin complement(48211..49323) Rhodopseudomonas palustris CGA009 2691025 NP_945399.1 CDS RPA0043 NC_005296.1 49368 50060 R glutathione S-transferase complement(49368..50060) Rhodopseudomonas palustris CGA009 2691036 NP_945400.1 CDS uppP NC_005296.1 50260 51066 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 50260..51066 Rhodopseudomonas palustris CGA009 2690963 NP_945401.1 CDS RPA0045 NC_005296.1 51116 52081 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex complement(51116..52081) Rhodopseudomonas palustris CGA009 2691427 NP_945402.1 CDS RPA0046 NC_005296.1 52495 53109 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 3'-5' exonuclease 52495..53109 Rhodopseudomonas palustris CGA009 2690538 NP_945403.1 CDS RPA0047 NC_005296.1 53339 54079 D hypothetical protein 53339..54079 Rhodopseudomonas palustris CGA009 2690422 NP_945404.1 CDS RPA0048 NC_005296.1 54088 54753 D OstA-like protein 54088..54753 Rhodopseudomonas palustris CGA009 2690273 NP_945405.1 CDS RPA0049 NC_005296.1 54870 55835 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter ATP-binding protein 54870..55835 Rhodopseudomonas palustris CGA009 2691497 NP_945406.1 CDS rpoN NC_005296.1 56042 57688 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 56042..57688 Rhodopseudomonas palustris CGA009 2691700 NP_945407.1 CDS RPA0051 NC_005296.1 57746 58351 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; sigma 54 modulation protein/ribosomal protein S30EA 57746..58351 Rhodopseudomonas palustris CGA009 2690170 NP_945408.1 CDS ptsN1 NC_005296.1 58627 59088 D PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 58627..59088 Rhodopseudomonas palustris CGA009 2689965 NP_945409.1 CDS RPA0053 NC_005296.1 59691 59957 R hypothetical protein complement(59691..59957) Rhodopseudomonas palustris CGA009 2689900 NP_945410.1 CDS RPA0054 NC_005296.1 60008 60433 R heat shock protein Hsp20 complement(60008..60433) Rhodopseudomonas palustris CGA009 2689396 NP_945411.1 CDS ugpC NC_005296.1 60587 61678 R part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit complement(60587..61678) Rhodopseudomonas palustris CGA009 2691569 NP_945412.1 CDS ugpE NC_005296.1 61681 62529 R binding-protein-dependent transport system inner membrane protein complement(61681..62529) Rhodopseudomonas palustris CGA009 2690020 NP_945413.1 CDS ugpA NC_005296.1 62529 63410 R binding-protein-dependent transport systems inner membrane component complement(62529..63410) Rhodopseudomonas palustris CGA009 2693029 NP_945414.1 CDS ugpB1 NC_005296.1 63575 64903 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; family 1 extracellular solute-binding protein complement(63575..64903) Rhodopseudomonas palustris CGA009 2691294 NP_945415.1 CDS RPA0059 NC_005296.1 65126 66331 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; L-carnitine dehydratase/bile acid-inducible protein F complement(65126..66331) Rhodopseudomonas palustris CGA009 2691544 NP_945416.1 CDS RPA0060 NC_005296.1 66656 67057 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(66656..67057) Rhodopseudomonas palustris CGA009 2691507 NP_945417.1 CDS aroA NC_005296.1 67198 68535 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 67198..68535 Rhodopseudomonas palustris CGA009 2688802 NP_945418.1 CDS RPA0062 NC_005296.1 68539 69213 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(68539..69213) Rhodopseudomonas palustris CGA009 2693054 NP_945419.1 CDS cmk NC_005296.1 69377 70015 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 69377..70015 Rhodopseudomonas palustris CGA009 2693070 NP_945420.1 CDS rpsA NC_005296.1 70316 72013 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 70316..72013 Rhodopseudomonas palustris CGA009 2688824 NP_945421.1 CDS sppA NC_005296.1 72242 73222 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; signal peptide peptidase SppA 36K type 72242..73222 Rhodopseudomonas palustris CGA009 2691270 NP_945422.1 CDS ihfB NC_005296.1 73388 73702 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 73388..73702 Rhodopseudomonas palustris CGA009 2689117 NP_945423.1 CDS RPA0067 NC_005296.1 73740 74126 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 73740..74126 Rhodopseudomonas palustris CGA009 2689908 NP_945424.1 CDS trpF NC_005296.1 74185 74826 D catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 74185..74826 Rhodopseudomonas palustris CGA009 2689234 NP_945425.1 CDS trpB NC_005296.1 74840 76054 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 74840..76054 Rhodopseudomonas palustris CGA009 2689187 NP_945426.1 CDS trpA NC_005296.1 76054 76890 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 76054..76890 Rhodopseudomonas palustris CGA009 2691358 NP_945427.1 CDS accD NC_005296.1 77000 77983 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 77000..77983 Rhodopseudomonas palustris CGA009 2689346 NP_945428.1 CDS folC NC_005296.1 77980 79308 D bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 77980..79308 Rhodopseudomonas palustris CGA009 2689629 NP_945429.1 CDS trxA NC_005296.1 79484 79804 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; thioredoxin complement(79484..79804) Rhodopseudomonas palustris CGA009 2689689 NP_945430.1 CDS RPA0074 NC_005296.1 79901 83386 R UvrD/REP helicase complement(79901..83386) Rhodopseudomonas palustris CGA009 2689579 NP_945431.1 CDS RPA0075 NC_005296.1 83383 86532 R hypothetical protein complement(83383..86532) Rhodopseudomonas palustris CGA009 2688874 NP_945432.1 CDS RPA0076 NC_005296.1 86608 87330 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; nucleotidyl transferase complement(86608..87330) Rhodopseudomonas palustris CGA009 2691646 NP_945433.1 CDS RPA0077 NC_005296.1 87488 87796 R hypothetical protein complement(87488..87796) Rhodopseudomonas palustris CGA009 2689299 NP_945434.1 CDS RPA0078 NC_005296.1 87900 89420 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(87900..89420) Rhodopseudomonas palustris CGA009 2688776 NP_945435.1 CDS RPA0079 NC_005296.1 89417 91963 R sensor histidine kinase complement(89417..91963) Rhodopseudomonas palustris CGA009 2689221 NP_945436.1 CDS dut NC_005296.1 92150 92608 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(92150..92608) Rhodopseudomonas palustris CGA009 2689183 NP_945437.2 CDS coaBC NC_005296.1 92605 94050 R catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; in the alphaproteobacteria, this protein contains an N-terminal SbtC-like domain; bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase complement(92605..94050) Rhodopseudomonas palustris CGA009 2689171 NP_945438.1 CDS ubiB NC_005296.1 94104 95681 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 2-polyprenylphenol 6-hydroxylase complement(94104..95681) Rhodopseudomonas palustris CGA009 2689456 NP_945439.1 CDS ubiE NC_005296.1 95678 96439 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(95678..96439) Rhodopseudomonas palustris CGA009 2689442 NP_945440.1 CDS mutM NC_005296.1 96685 97560 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 96685..97560 Rhodopseudomonas palustris CGA009 2689524 NP_945441.1 CDS RPA0085 NC_005296.1 97588 98931 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; peptidoglycan-binding domain 1 complement(97588..98931) Rhodopseudomonas palustris CGA009 2689517 NP_945442.1 CDS moeB NC_005296.1 99139 99939 D molybdenum cofactor biosynthesis protein 99139..99939 Rhodopseudomonas palustris CGA009 2689673 NP_945443.1 CDS RPA0087 NC_005296.1 100064 101752 D major facilitator transporter 100064..101752 Rhodopseudomonas palustris CGA009 2693100 NP_945444.1 CDS RPA0088 NC_005296.1 101883 102101 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(101883..102101) Rhodopseudomonas palustris CGA009 2689657 NP_945445.1 CDS RPA0089 NC_005296.1 102225 102566 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(102225..102566) Rhodopseudomonas palustris CGA009 2693095 NP_945446.1 CDS RPA0090 NC_005296.1 102804 103208 R hypothetical protein complement(102804..103208) Rhodopseudomonas palustris CGA009 2689099 NP_945447.1 CDS RPA0091 NC_005296.1 103287 103628 R hypothetical protein complement(103287..103628) Rhodopseudomonas palustris CGA009 2691381 NP_945448.1 CDS RPA0092 NC_005296.1 104169 104444 R hypothetical protein complement(104169..104444) Rhodopseudomonas palustris CGA009 2689181 NP_945449.1 CDS RPA0093 NC_005296.1 104575 105222 D TetR family transcriptional regulator 104575..105222 Rhodopseudomonas palustris CGA009 2689176 NP_945450.1 CDS RPA0094 NC_005296.1 105219 106136 D hypothetical protein 105219..106136 Rhodopseudomonas palustris CGA009 2689634 NP_945451.1 CDS RPA0095 NC_005296.1 106266 107411 D multidrug efflux membrane fusion protein 106266..107411 Rhodopseudomonas palustris CGA009 2689426 NP_945452.1 CDS RPA0096 NC_005296.1 107415 110564 D multidrug-efflux transport protein 107415..110564 Rhodopseudomonas palustris CGA009 2689465 NP_945453.1 CDS RPA0097 NC_005296.1 110707 111117 D flagellar basal body rod protein FlgC 110707..111117 Rhodopseudomonas palustris CGA009 2689467 NP_945454.1 CDS oppF NC_005296.1 111260 112318 R oligopeptide ABC transporter ATP-binding protein complement(111260..112318) Rhodopseudomonas palustris CGA009 2689466 NP_945455.1 CDS oppD NC_005296.1 112315 113313 R oligopeptide ABC transporter ATP-binding protein complement(112315..113313) Rhodopseudomonas palustris CGA009 2692220 NP_945456.1 CDS oppC NC_005296.1 113316 114197 R ABC transporter permease complement(113316..114197) Rhodopseudomonas palustris CGA009 2689175 NP_945457.1 CDS oppB NC_005296.1 114221 115201 R dipeptide transport system permease 1 complement(114221..115201) Rhodopseudomonas palustris CGA009 2689468 NP_945458.1 CDS oppA NC_005296.1 115230 116831 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter oligopeptide-binding protein complement(115230..116831) Rhodopseudomonas palustris CGA009 2689462 NP_945459.1 CDS RPA0103 NC_005296.1 116921 117877 R cobalamin synthesis protein/P47K complement(116921..117877) Rhodopseudomonas palustris CGA009 2689200 NP_945460.1 CDS RPA0104 NC_005296.1 117874 119517 R amidohydrolase complement(117874..119517) Rhodopseudomonas palustris CGA009 2689198 NP_945461.1 CDS RPA0105 NC_005296.1 119756 121297 D transcriptional regulator 119756..121297 Rhodopseudomonas palustris CGA009 2689179 NP_945462.1 CDS RPA0106 NC_005296.1 121313 122521 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched chain amino-acid ABC transporter substrate-binding protein complement(121313..122521) Rhodopseudomonas palustris CGA009 2689207 NP_945463.1 CDS RPA0107 NC_005296.1 122541 123581 R Zn-binding dehydrogenase complement(122541..123581) Rhodopseudomonas palustris CGA009 2689197 NP_945464.1 CDS RPA0108 NC_005296.1 123611 125359 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; benzaldehyde lyase complement(123611..125359) Rhodopseudomonas palustris CGA009 2689235 NP_945465.1 CDS RPA0109 NC_005296.1 125400 126188 R 3-oxoacyl-(acyl carrier protein) reductase complement(125400..126188) Rhodopseudomonas palustris CGA009 2689210 NP_945466.1 CDS RPA0110 NC_005296.1 126389 127051 D TetR family transcriptional regulator 126389..127051 Rhodopseudomonas palustris CGA009 2689457 NP_945467.1 CDS RPA0111 NC_005296.1 127104 127892 R hypothetical protein complement(127104..127892) Rhodopseudomonas palustris CGA009 2689483 NP_945468.1 CDS betB NC_005296.1 127901 129412 R betaine aldehyde dehydrogenase complement(127901..129412) Rhodopseudomonas palustris CGA009 2689248 NP_945469.1 CDS RPA0113 NC_005296.1 130028 131422 D oxidoreductase 130028..131422 Rhodopseudomonas palustris CGA009 2689252 NP_945470.1 CDS RPA0114 NC_005296.1 131546 131899 R hypothetical protein complement(131546..131899) Rhodopseudomonas palustris CGA009 2689266 NP_945471.1 CDS rmlC NC_005296.1 133329 133886 D dTDP-6-deoxy-D-glucose-3,5-epimerase 133329..133886 Rhodopseudomonas palustris CGA009 2689267 NP_945472.1 CDS rmlD NC_005296.1 133891 134784 D dTDP-6-deoxy-L-mannose-dehydrogenase 133891..134784 Rhodopseudomonas palustris CGA009 2689619 NP_945473.1 CDS rmlA NC_005296.1 134786 135661 D glucose-1-phosphate thymidylyltransferase 134786..135661 Rhodopseudomonas palustris CGA009 2689674 NP_945474.1 CDS RPA0121 NC_005296.1 136107 136643 D hypothetical protein 136107..136643 Rhodopseudomonas palustris CGA009 2689287 NP_945475.1 CDS phyB3 NC_005296.1 136734 139013 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; bacteriophytochrome PhyB 136734..139013 Rhodopseudomonas palustris CGA009 2689300 NP_945476.1 CDS RPA0123 NC_005296.1 139006 140646 D KTN NAD-binding domain-containing protein 139006..140646 Rhodopseudomonas palustris CGA009 2688878 NP_945477.1 CDS RPA0124 NC_005296.1 140653 141477 R 3',5'-cyclic-nucleotide phosphodiesterase complement(140653..141477) Rhodopseudomonas palustris CGA009 2689514 NP_945478.1 CDS RPA0125 NC_005296.1 141474 142298 R 3',5'-cyclic-nucleotide phosphodiesterase complement(141474..142298) Rhodopseudomonas palustris CGA009 2693067 NP_945479.1 CDS RPA0126 NC_005296.1 142363 143643 R sugar ABC transporter sugar binding protein complement(142363..143643) Rhodopseudomonas palustris CGA009 2688814 NP_945480.1 CDS RPA0127 NC_005296.1 143666 144502 R sugar ABC transporter permease complement(143666..144502) Rhodopseudomonas palustris CGA009 2689594 NP_945481.1 CDS RPA0128 NC_005296.1 144499 145458 R sugar ABC transporter permease complement(144499..145458) Rhodopseudomonas palustris CGA009 2689439 NP_945482.1 CDS RPA0129 NC_005296.1 145451 146605 R sugar ABC transporter substrate-binding protein complement(145451..146605) Rhodopseudomonas palustris CGA009 2689443 NP_945483.1 CDS RPA0130 NC_005296.1 146733 147611 D LysR family transcriptional regulator 146733..147611 Rhodopseudomonas palustris CGA009 2689445 NP_945484.1 CDS RPA0131 NC_005296.1 147617 148312 R sulfate ABC transporter ATP-binding protein complement(147617..148312) Rhodopseudomonas palustris CGA009 2689142 NP_945485.1 CDS RPA0132 NC_005296.1 148309 149082 R sulfonate ABC transporter permease complement(148309..149082) Rhodopseudomonas palustris CGA009 2689444 NP_945486.1 CDS RPA0133 NC_005296.1 149072 150064 R sulfate ABC transporter periplasmic binding protein complement(149072..150064) Rhodopseudomonas palustris CGA009 2689052 NP_945487.1 CDS hydC NC_005296.1 150080 151939 R hydrogenase gamma-fused hydrogenase large and small subunit complement(150080..151939) Rhodopseudomonas palustris CGA009 2689081 NP_945488.1 CDS RPA0135 NC_005296.1 151939 153960 R oxidoreductase complement(151939..153960) Rhodopseudomonas palustris CGA009 2689043 NP_945489.1 CDS RPA0136 NC_005296.1 154100 155809 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methyl-accepting chemotaxis receptor/sensory transducer complement(154100..155809) Rhodopseudomonas palustris CGA009 2691347 NP_945490.1 CDS cheB1 NC_005296.1 155814 156905 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; chemotaxis methylesterase CheB1 complement(155814..156905) Rhodopseudomonas palustris CGA009 2688818 NP_945491.1 CDS cheR1 NC_005296.1 156926 157768 R chemotaxis methyltransferase CheR1 complement(156926..157768) Rhodopseudomonas palustris CGA009 2688925 NP_945492.1 CDS RPA0139 NC_005296.1 157930 160131 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methyl-accepting chemotaxis receptor/sensory transducer complement(157930..160131) Rhodopseudomonas palustris CGA009 2691452 NP_945493.1 CDS cheW1-3 NC_005296.1 160198 160686 R chemotaxis signal transduction/oligomerization protein CheW1-2 complement(160198..160686) Rhodopseudomonas palustris CGA009 2689116 NP_945494.1 CDS cheW1-1 NC_005296.1 160747 161217 R chemotaxis signal transduction/oligomerization protein CheW1-1 complement(160747..161217) Rhodopseudomonas palustris CGA009 2689160 NP_945495.1 CDS cheA1 NC_005296.1 161217 163283 R chemotaxis histidine kinase CheA complement(161217..163283) Rhodopseudomonas palustris CGA009 2691612 NP_945496.1 CDS cheY1 NC_005296.1 163280 163645 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; response regulator receiver CheY1 complement(163280..163645) Rhodopseudomonas palustris CGA009 2691487 NP_945497.1 CDS RPA0144 NC_005296.1 163645 163968 R sulfate transporter complement(163645..163968) Rhodopseudomonas palustris CGA009 2691442 NP_945498.1 CDS RPA0145 NC_005296.1 164246 165412 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; metal dependent phosphohydrolase domain-containing protein 164246..165412 Rhodopseudomonas palustris CGA009 2688797 NP_945499.1 CDS RPA0146 NC_005296.1 165452 165883 D hypothetical protein 165452..165883 Rhodopseudomonas palustris CGA009 2688982 NP_945500.1 CDS RPA0147 NC_005296.1 165961 166752 R ModE family transcriptional regulator complement(165961..166752) Rhodopseudomonas palustris CGA009 2688778 NP_945501.1 CDS RPA0148 NC_005296.1 166873 167409 R hypothetical protein complement(166873..167409) Rhodopseudomonas palustris CGA009 2688787 NP_945502.1 CDS RPA0149 NC_005296.1 167433 168227 R iron ABC transporter ATP-binding protein complement(167433..168227) Rhodopseudomonas palustris CGA009 2688784 NP_945503.1 CDS RPA0150 NC_005296.1 168224 169246 R iron ABC transporter permease complement(168224..169246) Rhodopseudomonas palustris CGA009 2688780 NP_945504.1 CDS RPA0151 NC_005296.1 169248 170297 R iron ABC transporter periplasmic binding protein complement(169248..170297) Rhodopseudomonas palustris CGA009 2688772 NP_945505.1 CDS RPA0152 NC_005296.1 170294 170797 R hypothetical protein complement(170294..170797) Rhodopseudomonas palustris CGA009 2688757 NP_945506.1 CDS RPA0153 NC_005296.1 171435 173618 D outer membrane receptor for Fe transport 171435..173618 Rhodopseudomonas palustris CGA009 2688845 NP_945507.1 CDS RPA0154 NC_005296.1 173675 174313 D MotA/TolQ/ExbB proton channel family protein 173675..174313 Rhodopseudomonas palustris CGA009 2689878 NP_945508.1 CDS RPA0155 NC_005296.1 174326 174793 D tolR/exbD protein 174326..174793 Rhodopseudomonas palustris CGA009 2689861 NP_945509.1 CDS RPA0156 NC_005296.1 174790 175608 D tonB like protein 174790..175608 Rhodopseudomonas palustris CGA009 2689863 NP_945510.1 CDS RPA0157 NC_005296.1 175963 177126 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(175963..177126) Rhodopseudomonas palustris CGA009 2689859 NP_945511.1 CDS rplU NC_005296.1 177448 177828 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 50S ribosomal protein L21 177448..177828 Rhodopseudomonas palustris CGA009 2689338 NP_945512.1 CDS rpmA NC_005296.1 177918 178190 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 177918..178190 Rhodopseudomonas palustris CGA009 2689406 NP_945513.1 CDS RPA0160 NC_005296.1 178325 178924 D N-acetyltransferase GCN5 178325..178924 Rhodopseudomonas palustris CGA009 2693144 NP_945514.1 CDS RPA0161 NC_005296.1 179631 180536 R DMT family permease complement(179631..180536) Rhodopseudomonas palustris CGA009 2693146 NP_945515.1 CDS obgE NC_005296.1 180688 181749 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 180688..181749 Rhodopseudomonas palustris CGA009 2689349 NP_945516.1 CDS proB NC_005296.1 181888 183018 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 181888..183018 Rhodopseudomonas palustris CGA009 2693137 NP_945517.1 CDS proA NC_005296.1 183222 184514 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 183222..184514 Rhodopseudomonas palustris CGA009 2693140 NP_945518.1 CDS nadD NC_005296.1 184539 185168 D transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 184539..185168 Rhodopseudomonas palustris CGA009 2689356 NP_945519.1 CDS RPA0166 NC_005296.1 185539 185835 D Iojap-like protein 185539..185835 Rhodopseudomonas palustris CGA009 2689639 NP_945520.1 CDS RPA0167 NC_005296.1 185925 186407 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 185925..186407 Rhodopseudomonas palustris CGA009 2689339 NP_945521.1 CDS RPA0168 NC_005296.1 186427 187818 D peptidase M23B 186427..187818 Rhodopseudomonas palustris CGA009 2689642 NP_945522.1 CDS ctpA NC_005296.1 187815 189191 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; carboxyl-terminal protease 187815..189191 Rhodopseudomonas palustris CGA009 2689666 NP_945523.1 CDS RPA0170 NC_005296.1 189342 190580 D hypothetical protein 189342..190580 Rhodopseudomonas palustris CGA009 2689698 NP_945524.1 CDS invA1 NC_005296.1 190619 191125 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 190619..191125 Rhodopseudomonas palustris CGA009 2689297 NP_945525.1 CDS RPA0172 NC_005296.1 191262 192332 R hypothetical protein complement(191262..192332) Rhodopseudomonas palustris CGA009 2689694 NP_945526.1 CDS RPA0173 NC_005296.1 192604 193551 D sugar nucleotide dehydratase 192604..193551 Rhodopseudomonas palustris CGA009 2689298 NP_945527.1 CDS invA2 NC_005296.1 193548 194069 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 193548..194069 Rhodopseudomonas palustris CGA009 2689633 NP_945528.1 CDS atpC NC_005296.1 194253 194660 R produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit epsilon complement(194253..194660) Rhodopseudomonas palustris CGA009 2688875 NP_945529.1 CDS atpD NC_005296.1 194774 196204 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta complement(194774..196204) Rhodopseudomonas palustris CGA009 2689685 NP_945530.1 CDS atpG NC_005296.1 196276 197151 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma complement(196276..197151) Rhodopseudomonas palustris CGA009 2689295 NP_945531.1 CDS atpA NC_005296.1 197295 198827 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha complement(197295..198827) Rhodopseudomonas palustris CGA009 2689421 NP_945532.1 CDS atpH NC_005296.1 198827 199387 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta complement(198827..199387) Rhodopseudomonas palustris CGA009 2689332 NP_945533.1 CDS rlpA1 NC_005296.1 200091 200561 D rare lipoprotein A 200091..200561 Rhodopseudomonas palustris CGA009 2691377 NP_945534.1 CDS priA NC_005296.1 200717 202927 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(200717..202927) Rhodopseudomonas palustris CGA009 2689627 NP_945535.1 CDS xerC NC_005296.1 202981 204096 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 202981..204096 Rhodopseudomonas palustris CGA009 2691383 NP_945536.1 CDS RPA0183 NC_005296.1 204237 204827 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 204237..204827 Rhodopseudomonas palustris CGA009 2689331 NP_945537.1 CDS RPA0184 NC_005296.1 204891 205433 R hypothetical protein complement(204891..205433) Rhodopseudomonas palustris CGA009 2689625 NP_945538.1 CDS dldH NC_005296.1 205473 206876 R Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(205473..206876) Rhodopseudomonas palustris CGA009 2691378 NP_945539.1 CDS RPA0186 NC_005296.1 206908 207654 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; short-chain dehydrogenase/reductase SDR complement(206908..207654) Rhodopseudomonas palustris CGA009 2691360 NP_945540.1 CDS RPA0187 NC_005296.1 207662 208111 R hypothetical protein complement(207662..208111) Rhodopseudomonas palustris CGA009 2689825 NP_945541.1 CDS sucB NC_005296.1 208123 209376 R component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase complement(208123..209376) Rhodopseudomonas palustris CGA009 2689502 NP_945542.1 CDS sucA NC_005296.1 209481 212438 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(209481..212438) Rhodopseudomonas palustris CGA009 2691665 NP_945543.1 CDS sucD NC_005296.1 212566 213450 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; succinyl-CoA synthetase subunit alpha complement(212566..213450) Rhodopseudomonas palustris CGA009 2693104 NP_945544.1 CDS sucC NC_005296.1 213515 214711 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(213515..214711) Rhodopseudomonas palustris CGA009 2691664 NP_945545.1 CDS mdh NC_005296.1 214807 215775 R Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase complement(214807..215775) Rhodopseudomonas palustris CGA009 2691678 NP_945546.1 CDS RPA0193 NC_005296.1 215921 217105 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; AFG1-like ATPase complement(215921..217105) Rhodopseudomonas palustris CGA009 2689637 NP_945547.1 CDS RPA0194 NC_005296.1 217188 217727 R 2'-5' RNA ligase complement(217188..217727) Rhodopseudomonas palustris CGA009 2689942 NP_945548.1 CDS tesA NC_005296.1 217933 218601 R acyl-CoA thioesterase complement(217933..218601) Rhodopseudomonas palustris CGA009 2689499 NP_945549.1 CDS RPA0196 NC_005296.1 218627 219370 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter ATP-binding protein 218627..219370 Rhodopseudomonas palustris CGA009 2689508 NP_945550.1 CDS RPA0197 NC_005296.1 219374 221944 D hypothetical protein 219374..221944 Rhodopseudomonas palustris CGA009 2689819 NP_945551.1 CDS RPA0198 NC_005296.1 222285 223076 D acetate transporter 222285..223076 Rhodopseudomonas palustris CGA009 2692868 NP_945552.1 CDS RPA0199 NC_005296.1 223231 223761 D N-acetyltransferase GCN5 223231..223761 Rhodopseudomonas palustris CGA009 2689095 NP_945553.1 CDS RPA0200 NC_005296.1 223821 224189 R hypothetical protein complement(223821..224189) Rhodopseudomonas palustris CGA009 2689662 NP_945554.1 CDS RPA0201 NC_005296.1 224593 225468 R hypothetical protein complement(224593..225468) Rhodopseudomonas palustris CGA009 2691662 NP_945555.1 CDS acnA NC_005296.1 225515 228232 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(225515..228232) Rhodopseudomonas palustris CGA009 2689661 NP_945556.1 CDS cycV NC_005296.1 228448 229050 D ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 228448..229050 Rhodopseudomonas palustris CGA009 2693119 NP_945557.1 CDS cycW NC_005296.1 229047 229715 D heme exporter protein CcmB 229047..229715 Rhodopseudomonas palustris CGA009 2689488 NP_945558.1 CDS cycZ NC_005296.1 229808 230542 D heme exporter protein CcmC 229808..230542 Rhodopseudomonas palustris CGA009 2689822 NP_945559.1 CDS cycY NC_005296.1 230732 231328 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; periplasmic protein thiol-disulfide oxidoreductase DsbE 230732..231328 Rhodopseudomonas palustris CGA009 2689497 NP_945560.1 CDS RPA0207 NC_005296.1 231468 231866 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 231468..231866 Rhodopseudomonas palustris CGA009 2689420 NP_945561.1 CDS ispZ NC_005296.1 231999 232616 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(231999..232616) Rhodopseudomonas palustris CGA009 2689492 NP_945562.1 CDS ftsY NC_005296.1 232613 233560 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; signal recognition particle-docking protein FtsY complement(232613..233560) Rhodopseudomonas palustris CGA009 2689658 NP_945563.1 CDS RPA0210 NC_005296.1 233589 234563 D pseudouridine synthase 233589..234563 Rhodopseudomonas palustris CGA009 2693107 NP_945564.1 CDS RPA0211 NC_005296.1 234927 236879 D Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 234927..236879 Rhodopseudomonas palustris CGA009 2693110 NP_945565.1 CDS RPA0212 NC_005296.1 237262 237789 D ErfK/YbiS/YcfS/YnhG protein 237262..237789 Rhodopseudomonas palustris CGA009 2691670 NP_945566.1 CDS RPA0213 NC_005296.1 237864 239933 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; OmpA family protein complement(237864..239933) Rhodopseudomonas palustris CGA009 2689818 NP_945567.1 CDS RPA0214 NC_005296.1 240179 240436 R hypothetical protein complement(240179..240436) Rhodopseudomonas palustris CGA009 2689659 NP_945568.1 CDS RPA0215 NC_005296.1 240436 240924 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; general stress protein 26 complement(240436..240924) Rhodopseudomonas palustris CGA009 2689101 NP_945569.1 CDS sdhB NC_005296.1 241162 241944 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(241162..241944) Rhodopseudomonas palustris CGA009 2689820 NP_945570.1 CDS sdhA NC_005296.1 242052 243875 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(242052..243875) Rhodopseudomonas palustris CGA009 2693111 NP_945571.1 CDS sdhD NC_005296.1 243879 244292 R succinate dehydrogenase cytochrome b subunit complement(243879..244292) Rhodopseudomonas palustris CGA009 2689102 NP_945572.1 CDS sdhC NC_005296.1 244289 244687 R succinate dehydrogenase cytochrome b subunit complement(244289..244687) Rhodopseudomonas palustris CGA009 2689491 NP_945573.1 CDS czcD NC_005296.1 245070 246014 D cation diffusion facilitator family transporter 245070..246014 Rhodopseudomonas palustris CGA009 2693101 NP_945574.1 CDS matB NC_005296.1 246248 247759 R catalyzes the formation of malonyl-CoA from malonate and CoA; malonyl-CoA synthase complement(246248..247759) Rhodopseudomonas palustris CGA009 2693106 NP_945575.1 CDS RPA0222 NC_005296.1 248034 248609 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; beta-Ig-H3/fasciclin domain-containing protein 248034..248609 Rhodopseudomonas palustris CGA009 2691668 NP_945576.1 CDS RPA0223 NC_005296.1 248831 249469 D hypothetical protein 248831..249469 Rhodopseudomonas palustris CGA009 2691666 NP_945577.1 CDS RPA0224 NC_005296.1 249585 250364 D twin-arginine translocation pathway signal 249585..250364 Rhodopseudomonas palustris CGA009 2689804 NP_945578.1 CDS sodC NC_005296.1 250637 251155 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; superoxide dismutase 250637..251155 Rhodopseudomonas palustris CGA009 2689498 NP_945579.1 CDS RPA0226 NC_005296.1 251299 252486 R major facilitator transporter complement(251299..252486) Rhodopseudomonas palustris CGA009 2689801 NP_945580.1 CDS leuB NC_005296.1 252707 253819 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 252707..253819 Rhodopseudomonas palustris CGA009 2691669 NP_945581.1 CDS RPA0228 NC_005296.1 253976 254377 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(253976..254377) Rhodopseudomonas palustris CGA009 2689823 NP_945582.1 CDS RPA0229 NC_005296.1 254521 255330 R hypothetical protein complement(254521..255330) Rhodopseudomonas palustris CGA009 2693103 NP_945583.1 CDS asdB NC_005296.1 255445 256479 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 255445..256479 Rhodopseudomonas palustris CGA009 2691371 NP_945584.1 CDS RPA0231 NC_005296.1 256615 257169 D hypothetical protein 256615..257169 Rhodopseudomonas palustris CGA009 2689326 NP_945585.1 CDS RPA0232 NC_005296.1 257321 257965 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; carbonate dehydratase complement(257321..257965) Rhodopseudomonas palustris CGA009 2689400 NP_945586.1 CDS RPA0233 NC_005296.1 258147 259025 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Citryl-CoA lyase 258147..259025 Rhodopseudomonas palustris CGA009 2689478 NP_945587.1 CDS RPA0234 NC_005296.1 259203 260894 R methyl-accepting chemotaxis receptor/sensory transducer complement(259203..260894) Rhodopseudomonas palustris CGA009 2689602 NP_945588.1 CDS leuD NC_005296.1 261643 262248 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(261643..262248) Rhodopseudomonas palustris CGA009 2689587 NP_945589.1 CDS RPA0236 NC_005296.1 262334 262747 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(262334..262747) Rhodopseudomonas palustris CGA009 2689476 NP_945590.1 CDS RPA0237 NC_005296.1 263432 263716 D hypothetical protein 263432..263716 Rhodopseudomonas palustris CGA009 2689473 NP_945591.1 CDS RPA0238 NC_005296.1 263816 264139 D hypothetical protein 263816..264139 Rhodopseudomonas palustris CGA009 2689679 NP_945592.1 CDS RPA0239 NC_005296.1 264260 264946 D hypothetical protein 264260..264946 Rhodopseudomonas palustris CGA009 2693126 NP_945593.1 CDS leuC NC_005296.1 265013 266422 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(265013..266422) Rhodopseudomonas palustris CGA009 2691675 NP_945594.1 CDS rplS NC_005296.1 266732 267121 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(266732..267121) Rhodopseudomonas palustris CGA009 2689323 NP_945595.1 CDS trmD NC_005296.1 267235 267981 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(267235..267981) Rhodopseudomonas palustris CGA009 2689318 NP_945596.1 CDS rimM NC_005296.1 268124 268654 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(268124..268654) Rhodopseudomonas palustris CGA009 2689692 NP_945597.1 CDS rpsP NC_005296.1 268667 268987 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(268667..268987) Rhodopseudomonas palustris CGA009 2689313 NP_945598.1 CDS ffh/ftsY NC_005296.1 269157 270707 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; signal recognition particle protein complement(269157..270707) Rhodopseudomonas palustris CGA009 2689308 NP_945599.1 CDS RPA0246 NC_005296.1 271220 271591 D twitching motility protein PilT 271220..271591 Rhodopseudomonas palustris CGA009 2691379 NP_945600.1 CDS romA NC_005296.1 271596 272657 D outer membrane protein 271596..272657 Rhodopseudomonas palustris CGA009 2691653 NP_945601.1 CDS bp26 NC_005296.1 272667 273365 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(272667..273365) Rhodopseudomonas palustris CGA009 2691651 NP_945602.1 CDS RPA0249 NC_005296.1 273362 274144 R transcription activator effector binding complement(273362..274144) Rhodopseudomonas palustris CGA009 2689306 NP_945603.1 CDS dapF NC_005296.1 274381 275262 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 274381..275262 Rhodopseudomonas palustris CGA009 2689289 NP_945604.1 CDS RPA0251 NC_005296.1 275262 276533 D MiaB-like tRNA modifying enzyme 275262..276533 Rhodopseudomonas palustris CGA009 2689288 NP_945605.1 CDS RPA0252 NC_005296.1 276543 277205 R hypothetical protein complement(276543..277205) Rhodopseudomonas palustris CGA009 2689283 NP_945606.1 CDS RPA0253 NC_005296.1 277390 277803 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(277390..277803) Rhodopseudomonas palustris CGA009 2688775 NP_945607.1 CDS gpsA NC_005296.1 277806 278795 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(277806..278795) Rhodopseudomonas palustris CGA009 2689275 NP_945608.1 CDS gcp NC_005296.1 278831 280000 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(278831..280000) Rhodopseudomonas palustris CGA009 2688781 NP_945609.1 CDS RPA0256 NC_005296.1 280147 280893 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; uroporphyrinogen III synthase HEM4 280147..280893 Rhodopseudomonas palustris CGA009 2688846 NP_945610.1 CDS RPA0257 NC_005296.1 280945 282354 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 280945..282354 Rhodopseudomonas palustris CGA009 2689103 NP_945611.1 CDS RPA0258 NC_005296.1 282363 284060 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; HemY-like 282363..284060 Rhodopseudomonas palustris CGA009 2688777 NP_945612.1 CDS RPA0259 NC_005296.1 284749 285531 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; transmembrane sensor protein complement(284749..285531) Rhodopseudomonas palustris CGA009 2689856 NP_945613.1 CDS RPA0260 NC_005296.1 286170 287165 D AppA/PpaA family photosynthesis gene regulator 286170..287165 Rhodopseudomonas palustris CGA009 2688762 NP_945614.1 CDS RPA0261 NC_005296.1 287243 288424 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 287243..288424 Rhodopseudomonas palustris CGA009 2689244 NP_945615.1 CDS rlp2 NC_005296.1 288452 289750 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ribulose bisphosphate carboxylase-like protein complement(288452..289750) Rhodopseudomonas palustris CGA009 2689874 NP_945616.1 CDS RPA0263 NC_005296.1 289865 290287 R hypothetical protein complement(289865..290287) Rhodopseudomonas palustris CGA009 2689877 NP_945617.1 CDS RPA0264 NC_005296.1 290514 292451 D O-antigen acetylase 290514..292451 Rhodopseudomonas palustris CGA009 2689224 NP_945618.1 CDS algJ NC_005296.1 292504 293670 R alginate o-acetyltransferase AlgJ complement(292504..293670) Rhodopseudomonas palustris CGA009 2689872 NP_945619.1 CDS RPA0266 NC_005296.1 293673 295085 R alginate o-acetyltransferase AlgI complement(293673..295085) Rhodopseudomonas palustris CGA009 2689217 NP_945620.1 CDS trx NC_005296.1 295679 296599 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; thioredoxin 295679..296599 Rhodopseudomonas palustris CGA009 2689854 NP_945621.1 CDS RPA0268 NC_005296.1 296626 297303 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Lon family ATP-dependent protease 296626..297303 Rhodopseudomonas palustris CGA009 2689209 NP_945622.1 CDS RPA0269 NC_005296.1 297393 297590 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 297393..297590 Rhodopseudomonas palustris CGA009 2689203 NP_945623.1 CDS ubiH NC_005296.1 297726 299087 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(297726..299087) Rhodopseudomonas palustris CGA009 2689628 NP_945624.1 CDS tesB NC_005296.1 299186 300061 D Citation: Kuveret et al. (1995) J. Arch. Microbiol. 164:337-345; acyl-CoA thioesterase 299186..300061 Rhodopseudomonas palustris CGA009 2689416 NP_945625.1 CDS glnK1 NC_005296.1 300253 300591 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; GlnK nitrogen regulatory protein P-II 300253..300591 Rhodopseudomonas palustris CGA009 2689398 NP_945626.1 CDS amtB1 NC_005296.1 300666 301997 D ammonium transporter AmtB 300666..301997 Rhodopseudomonas palustris CGA009 2689410 NP_945627.1 CDS glnK2 NC_005296.1 302307 302645 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; GlnK nitrogen regulatory protein P-II 302307..302645 Rhodopseudomonas palustris CGA009 2689405 NP_945628.1 CDS amtB2 NC_005296.1 302683 304125 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ammonium transporter 302683..304125 Rhodopseudomonas palustris CGA009 2689199 NP_945629.1 CDS RPA0276 NC_005296.1 304243 304590 D PAP/25A core/DNA polymerase beta-like domain-containing protein 304243..304590 Rhodopseudomonas palustris CGA009 2689192 NP_945630.1 CDS RPA0277 NC_005296.1 304743 304937 D hypothetical protein 304743..304937 Rhodopseudomonas palustris CGA009 2689190 NP_945631.1 CDS RPA0278 NC_005296.1 304991 306286 D class I/II aminotransferase 304991..306286 Rhodopseudomonas palustris CGA009 2689185 NP_945632.1 CDS RPA0279 NC_005296.1 306300 308768 D DNA translocase FtsK 306300..308768 Rhodopseudomonas palustris CGA009 2689334 NP_945633.1 CDS RPA0280 NC_005296.1 308786 309727 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; outer membrane lipoprotein carrier protein LolA 308786..309727 Rhodopseudomonas palustris CGA009 2689705 NP_945634.1 CDS xthA1 NC_005296.1 310015 310827 D exodeoxyribonuclease III 310015..310827 Rhodopseudomonas palustris CGA009 2693142 NP_945635.1 CDS RPA0282 NC_005296.1 310879 311328 R cyclic nucleotide binding protein complement(310879..311328) Rhodopseudomonas palustris CGA009 2689471 NP_945636.1 CDS RPA0283 NC_005296.1 311368 312054 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; two-component transcriptional regulator complement(311368..312054) Rhodopseudomonas palustris CGA009 2689464 NP_945637.1 CDS RPA0284 NC_005296.1 312219 312782 D hypothetical protein 312219..312782 Rhodopseudomonas palustris CGA009 2689359 NP_945638.1 CDS RPA0285 NC_005296.1 312863 313522 R hypothetical protein complement(312863..313522) Rhodopseudomonas palustris CGA009 2689460 NP_945639.1 CDS RPA0286 NC_005296.1 313693 315366 D diguanylate cyclase 313693..315366 Rhodopseudomonas palustris CGA009 2689354 NP_945640.1 CDS leuS NC_005296.1 315572 318202 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 315572..318202 Rhodopseudomonas palustris CGA009 2689342 NP_945641.1 CDS RPA0288 NC_005296.1 318189 318752 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 318189..318752 Rhodopseudomonas palustris CGA009 2688877 NP_945642.1 CDS holA NC_005296.1 318809 319840 D required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 318809..319840 Rhodopseudomonas palustris CGA009 2689449 NP_945643.1 CDS RPA0290 NC_005296.1 320082 320321 R hypothetical protein complement(320082..320321) Rhodopseudomonas palustris CGA009 2689648 NP_945644.1 CDS parB1 NC_005296.1 320345 321235 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; parB-like partition proteins complement(320345..321235) Rhodopseudomonas palustris CGA009 2689436 NP_945645.1 CDS parA NC_005296.1 321408 322262 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cobyrinic acid a,c-diamide synthase complement(321408..322262) Rhodopseudomonas palustris CGA009 2689529 NP_945646.1 CDS gidB NC_005296.1 322290 322961 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(322290..322961) Rhodopseudomonas palustris CGA009 2691376 NP_945647.1 CDS gidA NC_005296.1 323133 325073 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(323133..325073) Rhodopseudomonas palustris CGA009 2689621 NP_945648.1 CDS trmE NC_005296.1 325167 326492 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(325167..326492) Rhodopseudomonas palustris CGA009 2689522 NP_945649.1 CDS rho NC_005296.1 326580 327845 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(326580..327845) Rhodopseudomonas palustris CGA009 2689518 NP_945650.1 CDS RPA0297 NC_005296.1 328106 328558 R hypothetical protein complement(328106..328558) Rhodopseudomonas palustris CGA009 2689676 NP_945651.1 CDS RPA0298 NC_005296.1 329001 329840 D hypothetical protein 329001..329840 Rhodopseudomonas palustris CGA009 2689667 NP_945652.1 CDS maf1 NC_005296.1 329837 330445 D maf protein 329837..330445 Rhodopseudomonas palustris CGA009 2689431 NP_945653.1 CDS coaE NC_005296.1 330542 331141 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 330542..331141 Rhodopseudomonas palustris CGA009 2689609 NP_945654.1 CDS dnaQ NC_005296.1 331177 331875 D DNA polymerase III subunit epsilon 331177..331875 Rhodopseudomonas palustris CGA009 2689605 NP_945655.1 CDS secB NC_005296.1 331954 332427 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(331954..332427) Rhodopseudomonas palustris CGA009 2693105 NP_945656.1 CDS RPA0303 NC_005296.1 332729 333598 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; import inner membrane translocase subunit Tim44 332729..333598 Rhodopseudomonas palustris CGA009 2689810 NP_945657.1 CDS RPA0304 NC_005296.1 333507 335069 D membrane-bound lytic murein transglycosylase 333507..335069 Rhodopseudomonas palustris CGA009 2689100 NP_945658.1 CDS RPA0305 NC_005296.1 335075 335659 D Smr protein/MutS2 335075..335659 Rhodopseudomonas palustris CGA009 2688848 NP_945659.1 CDS hslU NC_005296.1 335995 337296 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(335995..337296) Rhodopseudomonas palustris CGA009 2689813 NP_945660.1 CDS RPA0307 NC_005296.1 337338 337949 R hypothetical protein complement(337338..337949) Rhodopseudomonas palustris CGA009 2689504 NP_945661.1 CDS hslV NC_005296.1 337946 338515 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(337946..338515) Rhodopseudomonas palustris CGA009 2689815 NP_945662.1 CDS hisB NC_005296.1 338703 339296 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 338703..339296 Rhodopseudomonas palustris CGA009 2689501 NP_945663.1 CDS RPA0310 NC_005296.1 339324 339845 D hypothetical protein 339324..339845 Rhodopseudomonas palustris CGA009 2689802 NP_945664.1 CDS hisH NC_005296.1 339842 340492 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 339842..340492 Rhodopseudomonas palustris CGA009 2693112 NP_945665.1 CDS hisA NC_005296.1 340489 341226 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 340489..341226 Rhodopseudomonas palustris CGA009 2689809 NP_945666.1 CDS hisF NC_005296.1 341237 342004 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 341237..342004 Rhodopseudomonas palustris CGA009 2693114 NP_945667.1 CDS hisE NC_005296.1 342058 342381 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 342058..342381 Rhodopseudomonas palustris CGA009 2693116 NP_945668.1 CDS coaA NC_005296.1 342456 343412 D catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 342456..343412 Rhodopseudomonas palustris CGA009 2689507 NP_945669.1 CDS RPA0316 NC_005296.1 343601 344551 R hypothetical protein complement(343601..344551) Rhodopseudomonas palustris CGA009 2689505 NP_945670.1 CDS RPA0317 NC_005296.1 344712 346622 R sensor histidine kinase complement(344712..346622) Rhodopseudomonas palustris CGA009 2689506 NP_945671.1 CDS RPA0318 NC_005296.1 346749 348287 R Mg chelatase-like protein complement(346749..348287) Rhodopseudomonas palustris CGA009 2689511 NP_945672.1 CDS RPA0319 NC_005296.1 348387 348611 R hypothetical protein complement(348387..348611) Rhodopseudomonas palustris CGA009 2689490 NP_945673.1 CDS RPA0320 NC_005296.1 348608 349264 R autoinducer (acylhomoserine lactone) synthase complement(348608..349264) Rhodopseudomonas palustris CGA009 2691374 NP_945674.1 CDS RPA0321 NC_005296.1 349350 350081 R LuxR family transcriptional regulator complement(349350..350081) Rhodopseudomonas palustris CGA009 2689487 NP_945675.1 CDS gshB NC_005296.1 350318 351259 R catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(350318..351259) Rhodopseudomonas palustris CGA009 2689798 NP_945676.1 CDS RPA0323 NC_005296.1 351332 351724 R hypothetical protein complement(351332..351724) Rhodopseudomonas palustris CGA009 2691671 NP_945677.1 CDS RPA0324 NC_005296.1 351711 352673 R hypothetical protein complement(351711..352673) Rhodopseudomonas palustris CGA009 2689512 NP_945678.1 CDS RPA0325 NC_005296.1 352886 354085 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; extracellular ligand-binding receptor 352886..354085 Rhodopseudomonas palustris CGA009 2689325 NP_945679.1 CDS RPA0326 NC_005296.1 354103 354465 R MarR family transcriptional regulator complement(354103..354465) Rhodopseudomonas palustris CGA009 2689811 NP_945680.1 CDS hemN2 NC_005296.1 354870 356027 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(354870..356027) Rhodopseudomonas palustris CGA009 2689814 NP_945681.1 CDS RPA0328 NC_005296.1 356017 356649 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase complement(356017..356649) Rhodopseudomonas palustris CGA009 2689496 NP_945682.1 CDS rph NC_005296.1 356701 357414 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(356701..357414) Rhodopseudomonas palustris CGA009 2689824 NP_945683.1 CDS hrcA NC_005296.1 357569 358657 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 357569..358657 Rhodopseudomonas palustris CGA009 2693109 NP_945684.1 CDS RPA0331 NC_005296.1 358745 359371 D with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 358745..359371 Rhodopseudomonas palustris CGA009 2689494 NP_945685.1 CDS RPA0332 NC_005296.1 359478 360419 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(359478..360419) Rhodopseudomonas palustris CGA009 2693118 NP_945686.1 CDS dnaK NC_005296.1 360754 362649 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 360754..362649 Rhodopseudomonas palustris CGA009 2689800 NP_945687.1 CDS dnaJ NC_005296.1 362864 364003 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 362864..364003 Rhodopseudomonas palustris CGA009 2691660 NP_945688.1 CDS RPA0335 NC_005296.1 364097 364702 D phospholipid N-methyltransferase 364097..364702 Rhodopseudomonas palustris CGA009 2691667 NP_945689.1 CDS RPA0336 NC_005296.1 364804 365385 D NADPH-dependent FMN reductase 364804..365385 Rhodopseudomonas palustris CGA009 2689493 NP_945690.1 CDS pyrF NC_005296.1 365393 366106 D OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 365393..366106 Rhodopseudomonas palustris CGA009 2689700 NP_945691.1 CDS RPA0338 NC_005296.1 366132 366440 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 366132..366440 Rhodopseudomonas palustris CGA009 2689940 NP_945692.1 CDS dapB NC_005296.1 366537 367352 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 366537..367352 Rhodopseudomonas palustris CGA009 2689626 NP_945693.1 CDS pgm1 NC_005296.1 367433 368947 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(367433..368947) Rhodopseudomonas palustris CGA009 2688760 NP_945694.1 CDS ogt NC_005296.1 369039 369971 R O6-methylguanine-DNA methyltransferase complement(369039..369971) Rhodopseudomonas palustris CGA009 2689409 NP_945695.1 CDS RPA0342 NC_005296.1 369987 370502 R hypothetical protein complement(369987..370502) Rhodopseudomonas palustris CGA009 2689865 NP_945696.1 CDS nth NC_005296.1 370525 371310 D endonuclease III 370525..371310 Rhodopseudomonas palustris CGA009 2693131 NP_945697.1 CDS RPA0344 NC_005296.1 371426 372997 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(371426..372997) Rhodopseudomonas palustris CGA009 2689344 NP_945698.1 CDS RPA0345 NC_005296.1 373120 374088 R protoporphyrin IX magnesium chelatase bchO complement(373120..374088) Rhodopseudomonas palustris CGA009 2689340 NP_945699.1 CDS RPA0346 NC_005296.1 374662 375405 R role in sulfur assimilation; CysZ-like protein complement(374662..375405) Rhodopseudomonas palustris CGA009 2689343 NP_945700.1 CDS aceK NC_005296.1 375493 377325 R catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein complement(375493..377325) Rhodopseudomonas palustris CGA009 2689655 NP_945701.1 CDS RPA0348 NC_005296.1 377649 378572 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hydrolase complement(377649..378572) Rhodopseudomonas palustris CGA009 2689317 NP_945702.1 CDS dcm NC_005296.1 378721 379893 D site-specific DNA-methyltransferase 378721..379893 Rhodopseudomonas palustris CGA009 2689315 NP_945703.1 CDS vsr NC_005296.1 379890 380306 D patch repair protein 379890..380306 Rhodopseudomonas palustris CGA009 2689647 NP_945704.1 CDS RPA0351 NC_005296.1 380311 381132 D hypothetical protein 380311..381132 Rhodopseudomonas palustris CGA009 2689645 NP_945705.1 CDS lepA NC_005296.1 381139 382950 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(381139..382950) Rhodopseudomonas palustris CGA009 2689311 NP_945706.1 CDS RPA0353 NC_005296.1 383056 384633 D hypothetical protein 383056..384633 Rhodopseudomonas palustris CGA009 2689310 NP_945707.1 CDS RPA0354 NC_005296.1 384654 384986 R PTS system phosphocarrier protein HPr nitrogen regulation complement(384654..384986) Rhodopseudomonas palustris CGA009 2689307 NP_945708.1 CDS RPA0355 NC_005296.1 384983 385384 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; PTS system fructose subfamily transporter subunit IIA complement(384983..385384) Rhodopseudomonas palustris CGA009 2691672 NP_945709.1 CDS RPA0356 NC_005296.1 385572 386039 R HPr kinase complement(385572..386039) Rhodopseudomonas palustris CGA009 2689858 NP_945710.1 CDS exoS NC_005296.1 386036 387781 R sensor signal transduction histidine kinase complement(386036..387781) Rhodopseudomonas palustris CGA009 2689281 NP_945711.1 CDS chvI NC_005296.1 387944 388645 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; two-component transcriptional regulator ChvI complement(387944..388645) Rhodopseudomonas palustris CGA009 2689272 NP_945712.1 CDS RPA0359 NC_005296.1 388879 389613 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 388879..389613 Rhodopseudomonas palustris CGA009 2688768 NP_945713.1 CDS pckA NC_005296.1 389802 391415 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 389802..391415 Rhodopseudomonas palustris CGA009 2689643 NP_945714.1 CDS RPA0361 NC_005296.1 391503 392378 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(391503..392378) Rhodopseudomonas palustris CGA009 2689640 NP_945715.1 CDS penP NC_005296.1 392647 393522 D class A beta-lactamase 392647..393522 Rhodopseudomonas palustris CGA009 2689274 NP_945716.1 CDS RPA0363 NC_005296.1 393537 394664 R hypothetical protein complement(393537..394664) Rhodopseudomonas palustris CGA009 2691363 NP_945717.1 CDS RPA0364 NC_005296.1 394743 395546 R permease complement(394743..395546) Rhodopseudomonas palustris CGA009 2689638 NP_945718.1 CDS RPA0365 NC_005296.1 395640 396536 D beta-lactamase-like protein 395640..396536 Rhodopseudomonas palustris CGA009 2691373 NP_945719.1 CDS RPA0366 NC_005296.1 396635 396997 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 396635..396997 Rhodopseudomonas palustris CGA009 2689255 NP_945720.1 CDS rpoH NC_005296.1 397207 398106 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(397207..398106) Rhodopseudomonas palustris CGA009 2689104 NP_945721.1 CDS rluD NC_005296.1 398328 399551 R pseudouridine synthase complement(398328..399551) Rhodopseudomonas palustris CGA009 2689669 NP_945722.1 CDS RPA0369 NC_005296.1 400116 402719 R aminoacyl-tRNA synthetase complement(400116..402719) Rhodopseudomonas palustris CGA009 2689212 NP_945723.1 CDS RPA0370 NC_005296.1 403032 405548 R diguanylate cyclase/phosphodiesterase complement(403032..405548) Rhodopseudomonas palustris CGA009 2689215 NP_945724.1 CDS metB NC_005296.1 405749 406933 R cystathionine gamma-lyase complement(405749..406933) Rhodopseudomonas palustris CGA009 2689523 NP_945725.1 CDS RPA0372 NC_005296.1 407065 407526 D CTG start codon; AsnC family transcriptional regulator 407065..407526 Rhodopseudomonas palustris CGA009 2689520 NP_945726.1 CDS trxC NC_005296.1 407527 407964 R thioredoxin complement(407527..407964) Rhodopseudomonas palustris CGA009 2689521 NP_945727.1 CDS RPA0374 NC_005296.1 408104 409087 R Zn-containing alcohol dehydrogenase complement(408104..409087) Rhodopseudomonas palustris CGA009 2689484 NP_945728.1 CDS chaB NC_005296.1 409161 409382 R cation transport regulator complement(409161..409382) Rhodopseudomonas palustris CGA009 2689202 NP_945729.1 CDS pimt1 NC_005296.1 409612 410334 D L-isoaspartyl protein carboxyl methyltransferase 409612..410334 Rhodopseudomonas palustris CGA009 2689672 NP_945730.1 CDS RPA0377 NC_005296.1 410486 411310 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 410486..411310 Rhodopseudomonas palustris CGA009 2689665 NP_945731.1 CDS melA NC_005296.1 411507 412787 R alpha-D-galactoside galactohydrolase complement(411507..412787) Rhodopseudomonas palustris CGA009 2689189 NP_945732.1 CDS pfkB NC_005296.1 413011 413949 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 6-phosphofructokinase 413011..413949 Rhodopseudomonas palustris CGA009 2689184 NP_945733.1 CDS RPA0380 NC_005296.1 414065 416377 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; oxidoreductase 414065..416377 Rhodopseudomonas palustris CGA009 2689180 NP_945734.1 CDS glgC NC_005296.1 416649 417911 D catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 416649..417911 Rhodopseudomonas palustris CGA009 2689693 NP_945735.1 CDS glgA1 NC_005296.1 417908 419359 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 417908..419359 Rhodopseudomonas palustris CGA009 2689178 NP_945736.1 CDS RPA0383 NC_005296.1 419505 420305 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 419505..420305 Rhodopseudomonas palustris CGA009 2689688 NP_945737.1 CDS RPA0384 NC_005296.1 420302 420874 D hypothetical protein 420302..420874 Rhodopseudomonas palustris CGA009 2689686 NP_945738.1 CDS radC NC_005296.1 420890 421615 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(420890..421615) Rhodopseudomonas palustris CGA009 2689172 NP_945739.1 CDS RPA0386 NC_005296.1 421950 423050 D Ku domain-containing protein 421950..423050 Rhodopseudomonas palustris CGA009 2689472 NP_945740.1 CDS map NC_005296.1 423309 424133 R methionine aminopeptidase type I complement(423309..424133) Rhodopseudomonas palustris CGA009 2689469 NP_945741.1 CDS RPA0388 NC_005296.1 424329 426122 D the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 424329..426122 Rhodopseudomonas palustris CGA009 2689624 NP_945742.1 CDS mepA NC_005296.1 426147 427109 R D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase complement(426147..427109) Rhodopseudomonas palustris CGA009 2692869 NP_945743.1 CDS RPA0390 NC_005296.1 427489 429726 D diguanylate cyclase/phosphodiesterase 427489..429726 Rhodopseudomonas palustris CGA009 2689454 NP_945744.1 CDS RPA0391 NC_005296.1 429741 431498 R alkaline phosphatase complement(429741..431498) Rhodopseudomonas palustris CGA009 2689879 NP_945745.1 CDS argG NC_005296.1 431740 433077 R catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase complement(431740..433077) Rhodopseudomonas palustris CGA009 2689453 NP_945746.1 CDS RPA0393 NC_005296.1 433170 433949 R PA-phosphatase-like phosphoesterase complement(433170..433949) Rhodopseudomonas palustris CGA009 2689429 NP_945747.1 CDS RPA0394 NC_005296.1 433946 434446 R hypothetical protein complement(433946..434446) Rhodopseudomonas palustris CGA009 2689427 NP_945748.1 CDS RPA0395 NC_005296.1 434446 435039 R metal dependent phosphohydrolase complement(434446..435039) Rhodopseudomonas palustris CGA009 2689617 NP_945749.1 CDS RPA0396 NC_005296.1 435044 436318 R hypothetical protein complement(435044..436318) Rhodopseudomonas palustris CGA009 2689607 NP_945750.1 CDS RPA0397 NC_005296.1 436430 437005 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(436430..437005) Rhodopseudomonas palustris CGA009 2689600 NP_945751.1 CDS RPA0398 NC_005296.1 437159 437995 R 2 4-dienoyl-CoA reductase complement(437159..437995) Rhodopseudomonas palustris CGA009 2689598 NP_945752.1 CDS RPA0399 NC_005296.1 438123 439292 R transposase complement(438123..439292) Rhodopseudomonas palustris CGA009 2689595 NP_945753.1 CDS RPA0400 NC_005296.1 439493 440467 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; alcohol dehydrogenase 439493..440467 Rhodopseudomonas palustris CGA009 2689333 NP_945754.1 CDS RPA0401 NC_005296.1 440595 442730 R amine oxidase complement(440595..442730) Rhodopseudomonas palustris CGA009 2689330 NP_945755.1 CDS RPA0402 NC_005296.1 442869 443489 D TetR family transcriptional regulator 442869..443489 Rhodopseudomonas palustris CGA009 2689591 NP_945756.1 CDS RPA0403 NC_005296.1 443508 443882 R hypothetical protein complement(443508..443882) Rhodopseudomonas palustris CGA009 2689401 NP_945757.1 CDS phhB NC_005296.1 443965 444267 R 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase complement(443965..444267) Rhodopseudomonas palustris CGA009 2689873 NP_945758.1 CDS RPA0405 NC_005296.1 444410 445855 D hypothetical protein 444410..445855 Rhodopseudomonas palustris CGA009 2689422 NP_945759.1 CDS RPA0406 NC_005296.1 445859 447304 R hypothetical protein complement(445859..447304) Rhodopseudomonas palustris CGA009 2689680 NP_945760.1 CDS RPA0407 NC_005296.1 447309 449585 R outer membrane siderophore receptor complement(447309..449585) Rhodopseudomonas palustris CGA009 2689803 NP_945761.1 CDS bipA NC_005296.1 450314 452137 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; GTP-binding protein TypA 450314..452137 Rhodopseudomonas palustris CGA009 2689805 NP_945762.1 CDS RPA0409 NC_005296.1 452247 453515 D amine oxidase 452247..453515 Rhodopseudomonas palustris CGA009 2689812 NP_945763.1 CDS RPA0410 NC_005296.1 453691 454200 D N-acetyltransferase GCN5 453691..454200 Rhodopseudomonas palustris CGA009 2689677 NP_945764.1 CDS ppa NC_005296.1 454277 454813 D catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 454277..454813 Rhodopseudomonas palustris CGA009 2689589 NP_945765.1 CDS CPS1 NC_005296.1 454849 456330 D hypothetical protein 454849..456330 Rhodopseudomonas palustris CGA009 2689575 NP_945766.1 CDS RPA0413 NC_005296.1 456520 457407 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(456520..457407) Rhodopseudomonas palustris CGA009 2689707 NP_945767.1 CDS RPA0414 NC_005296.1 457514 457852 R hypothetical protein complement(457514..457852) Rhodopseudomonas palustris CGA009 2689424 NP_945768.1 CDS RPA0415 NC_005296.1 457866 458363 R hypothetical protein complement(457866..458363) Rhodopseudomonas palustris CGA009 2693123 NP_945769.1 CDS RPA0416 NC_005296.1 458632 459444 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(458632..459444) Rhodopseudomonas palustris CGA009 2689485 NP_945770.1 CDS RPA0417 NC_005296.1 459526 460026 R hypothetical protein complement(459526..460026) Rhodopseudomonas palustris CGA009 2693098 NP_945771.1 CDS RPA0418 NC_005296.1 460130 460927 R Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase complement(460130..460927) Rhodopseudomonas palustris CGA009 2689509 NP_945772.1 CDS RPA0419 NC_005296.1 461048 461827 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; short chain dehydrogenase/reductase family protein complement(461048..461827) Rhodopseudomonas palustris CGA009 2693099 NP_945773.1 CDS RPA0420 NC_005296.1 462010 462630 R hypothetical protein complement(462010..462630) Rhodopseudomonas palustris CGA009 2689516 NP_945774.1 CDS RPA0421 NC_005296.1 462674 464059 R cytochrome P450 complement(462674..464059) Rhodopseudomonas palustris CGA009 2688779 NP_945775.1 CDS RPA0422 NC_005296.1 464180 465181 R Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase complement(464180..465181) Rhodopseudomonas palustris CGA009 2689399 NP_945776.1 CDS RPA0423 NC_005296.1 465416 465940 D hypothetical protein 465416..465940 Rhodopseudomonas palustris CGA009 2689515 NP_945777.1 CDS RPA0424 NC_005296.1 466048 466539 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; FUR family transcriptional regulator complement(466048..466539) Rhodopseudomonas palustris CGA009 2689196 NP_945778.1 CDS fabA NC_005296.1 466798 467325 D catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 466798..467325 Rhodopseudomonas palustris CGA009 2689675 NP_945779.1 CDS fabB NC_005296.1 467387 468613 D FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 467387..468613 Rhodopseudomonas palustris CGA009 2689211 NP_945780.1 CDS RPA0427 NC_005296.1 468789 469598 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 468789..469598 Rhodopseudomonas palustris CGA009 2689855 NP_945781.1 CDS RPA0428 NC_005296.1 469771 470289 R hypothetical protein complement(469771..470289) Rhodopseudomonas palustris CGA009 2689191 NP_945782.1 CDS katG NC_005296.1 470517 472727 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; catalase/peroxidase HPI complement(470517..472727) Rhodopseudomonas palustris CGA009 2689186 NP_945783.1 CDS oxyR NC_005296.1 472997 473935 D LysR family transcriptional regulator 472997..473935 Rhodopseudomonas palustris CGA009 2689413 NP_945784.1 CDS RPA0431 NC_005296.1 473947 475629 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methyl-accepting chemotaxis receptor/sensory transducer complement(473947..475629) Rhodopseudomonas palustris CGA009 2689415 NP_945785.1 CDS pnp NC_005296.1 475919 478087 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; polynucleotide phosphorylase complement(475919..478087) Rhodopseudomonas palustris CGA009 2689403 NP_945786.1 CDS rpsO NC_005296.1 478426 478695 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(478426..478695) Rhodopseudomonas palustris CGA009 2689477 NP_945787.1 CDS truB NC_005296.1 478698 479798 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(478698..479798) Rhodopseudomonas palustris CGA009 2689402 NP_945788.1 CDS rbfA NC_005296.1 479798 480211 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(479798..480211) Rhodopseudomonas palustris CGA009 2691677 NP_945789.1 CDS infB NC_005296.1 480385 483036 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(480385..483036) Rhodopseudomonas palustris CGA009 2689173 NP_945790.1 CDS RPA0437 NC_005296.1 483029 483808 R hypothetical protein complement(483029..483808) Rhodopseudomonas palustris CGA009 2689671 NP_945791.1 CDS nusA NC_005296.1 483870 485483 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(483870..485483) Rhodopseudomonas palustris CGA009 2689461 NP_945792.1 CDS RPA0439 NC_005296.1 485486 486265 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(485486..486265) Rhodopseudomonas palustris CGA009 2689670 NP_945793.1 CDS RPA0440 NC_005296.1 486599 487684 D hypothetical protein 486599..487684 Rhodopseudomonas palustris CGA009 2689463 NP_945794.1 CDS RPA0441 NC_005296.1 487808 488656 D hypothetical protein 487808..488656 Rhodopseudomonas palustris CGA009 2693120 NP_945795.1 CDS trmB NC_005296.1 488669 489466 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(488669..489466) Rhodopseudomonas palustris CGA009 2689452 NP_945796.1 CDS RPA0443 NC_005296.1 489541 489960 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; XRE family transcriptional regulator complement(489541..489960) Rhodopseudomonas palustris CGA009 2693150 NP_945797.1 CDS lnt NC_005296.1 490161 491771 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(490161..491771) Rhodopseudomonas palustris CGA009 2693132 NP_945798.1 CDS RPA0445 NC_005296.1 491768 492913 R HlyC/CorC family transporter complement(491768..492913) Rhodopseudomonas palustris CGA009 2693135 NP_945799.1 CDS RPA0446 NC_005296.1 492915 493487 R hypothetical protein complement(492915..493487) Rhodopseudomonas palustris CGA009 2689451 NP_945800.1 CDS RPA0447 NC_005296.1 493487 494368 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; phoH-like protein complement(493487..494368) Rhodopseudomonas palustris CGA009 2689474 NP_945801.1 CDS miaB NC_005296.1 494549 495940 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(494549..495940) Rhodopseudomonas palustris CGA009 2689447 NP_945802.1 CDS RPA0449 NC_005296.1 496060 496719 R HAD-superfamily hydrolase complement(496060..496719) Rhodopseudomonas palustris CGA009 2689204 NP_945803.1 CDS RPA0450 NC_005296.1 496807 497238 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; FUR family transcriptional regulator complement(496807..497238) Rhodopseudomonas palustris CGA009 2689441 NP_945804.1 CDS rimI NC_005296.1 497301 497786 R ribosomal-protein-alanine acetyltransferase complement(497301..497786) Rhodopseudomonas palustris CGA009 2689437 NP_945805.1 CDS RPA0452 NC_005296.1 497809 498504 R peptidase M22 glycoprotease complement(497809..498504) Rhodopseudomonas palustris CGA009 2689438 NP_945806.1 CDS RPA0453 NC_005296.1 498641 499207 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; NifU-like domain-containing protein complement(498641..499207) Rhodopseudomonas palustris CGA009 2689808 NP_945807.1 CDS RPA0454 NC_005296.1 499353 499901 R hypothetical protein complement(499353..499901) Rhodopseudomonas palustris CGA009 2689480 NP_945808.1 CDS trpS NC_005296.1 500093 501145 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(500093..501145) Rhodopseudomonas palustris CGA009 2689097 NP_945809.1 CDS RPA0456 NC_005296.1 501201 502757 R MviN family virulence factors efflux protein complement(501201..502757) Rhodopseudomonas palustris CGA009 2688849 NP_945810.1 CDS RPA0457 NC_005296.1 503032 504099 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; PfkB protein 503032..504099 Rhodopseudomonas palustris CGA009 2689664 NP_945811.1 CDS RPA0458 NC_005296.1 504322 505875 R activates fatty acids by binding to coenzyme A; AMP-binding protein complement(504322..505875) Rhodopseudomonas palustris CGA009 2689348 NP_945812.1 CDS RPA0459 NC_005296.1 505524 506015 R fatty acid--CoA ligase complement(505524..506015) Rhodopseudomonas palustris CGA009 2689435 NP_945813.1 CDS RPA0460 NC_005296.1 506145 507332 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; beta-lactamase complement(506145..507332) Rhodopseudomonas palustris CGA009 2689345 NP_945814.1 CDS gabD1 NC_005296.1 508060 509553 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; succinate-semialdehyde dehydrogenase 508060..509553 Rhodopseudomonas palustris CGA009 2689337 NP_945815.1 CDS RPA0462 NC_005296.1 509765 510670 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(509765..510670) Rhodopseudomonas palustris CGA009 2689433 NP_945816.1 CDS RPA0463 NC_005296.1 510757 511386 D TetR family transcriptional regulator 510757..511386 Rhodopseudomonas palustris CGA009 2689430 NP_945817.1 CDS RPA0464 NC_005296.1 511411 513036 D long-chain fatty acid CoA ligase (AMP-binding) 511411..513036 Rhodopseudomonas palustris CGA009 2689616 NP_945818.1 CDS RPA0465 NC_005296.1 513127 514560 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; transmembrane protein complement(513127..514560) Rhodopseudomonas palustris CGA009 2689654 NP_945819.1 CDS RPA0466 NC_005296.1 514700 515383 R hypothetical protein complement(514700..515383) Rhodopseudomonas palustris CGA009 2689612 NP_945820.1 CDS RPA0467 NC_005296.1 515386 516372 R Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(515386..516372) Rhodopseudomonas palustris CGA009 2689701 NP_945821.1 CDS RPA0468 NC_005296.1 516372 517196 R binding-protein-dependent transport system inner membrane protein complement(516372..517196) Rhodopseudomonas palustris CGA009 2689695 NP_945822.1 CDS AtsC NC_005296.1 517193 518023 R sulfate ester transporter ATP-binding protein complement(517193..518023) Rhodopseudomonas palustris CGA009 2689641 NP_945823.1 CDS RPA0470 NC_005296.1 518032 519174 R ABC transporter periplasmic binding protein complement(518032..519174) Rhodopseudomonas palustris CGA009 2689691 NP_945824.1 CDS RPA0471 NC_005296.1 519304 520116 D creatininase 519304..520116 Rhodopseudomonas palustris CGA009 2689397 NP_945825.1 CDS RPA0472 NC_005296.1 520350 522560 D OmpA-like transmembrane domain-containing protein 520350..522560 Rhodopseudomonas palustris CGA009 2689593 NP_945826.1 CDS PA3602 NC_005296.1 522591 524222 R ferredoxin-dependent glutamate synthase complement(522591..524222) Rhodopseudomonas palustris CGA009 2689590 NP_945827.1 CDS RPA0474 NC_005296.1 524516 525466 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 524516..525466 Rhodopseudomonas palustris CGA009 2689586 NP_945828.1 CDS RPA0475 NC_005296.1 525558 526559 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; oxidoreductase 525558..526559 Rhodopseudomonas palustris CGA009 2693115 NP_945829.1 CDS RPA0476 NC_005296.1 526913 528244 D hypothetical protein 526913..528244 Rhodopseudomonas palustris CGA009 2693129 NP_945830.1 CDS RPA0477 NC_005296.1 528378 528938 D hypothetical protein 528378..528938 Rhodopseudomonas palustris CGA009 2693125 NP_945831.1 CDS RPA0478 NC_005296.1 528996 529292 D hypothetical protein 528996..529292 Rhodopseudomonas palustris CGA009 2689296 NP_945832.1 CDS fabG1 NC_005296.1 529346 530128 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; short-chain dehydrogenase/reductase SDR complement(529346..530128) Rhodopseudomonas palustris CGA009 2689291 NP_945833.1 CDS RPA0480 NC_005296.1 530389 531453 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl-CoA dehydrogenase 530389..531453 Rhodopseudomonas palustris CGA009 2689635 NP_945834.1 CDS RPA0481 NC_005296.1 531480 532640 D acyl-CoA dehydrogenase 531480..532640 Rhodopseudomonas palustris CGA009 2689630 NP_945835.1 CDS RPA0482 NC_005296.1 532674 533480 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; enoyl-CoA hydratase 532674..533480 Rhodopseudomonas palustris CGA009 2693124 NP_945836.1 CDS RPA0483 NC_005296.1 533625 534389 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(533625..534389) Rhodopseudomonas palustris CGA009 2689335 NP_945837.1 CDS paaG1 NC_005296.1 534392 535180 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(534392..535180) Rhodopseudomonas palustris CGA009 2689423 NP_945838.1 CDS RPA0485 NC_005296.1 535357 536562 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; urea/short-chain amide ABC transporter complement(535357..536562) Rhodopseudomonas palustris CGA009 2689329 NP_945839.1 CDS RPA0486 NC_005296.1 536979 537704 D nuclease 536979..537704 Rhodopseudomonas palustris CGA009 2691656 NP_945840.1 CDS RPA0487 NC_005296.1 537716 539233 D peptidase M48 Ste24p 537716..539233 Rhodopseudomonas palustris CGA009 2691652 NP_945841.1 CDS RPA0488 NC_005296.1 539338 540000 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; CarD-like transcriptional regulator complement(539338..540000) Rhodopseudomonas palustris CGA009 2689328 NP_945842.1 CDS RPA0489 NC_005296.1 540697 541035 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ferredoxin II complement(540697..541035) Rhodopseudomonas palustris CGA009 2689528 NP_945843.1 CDS RPA0490 NC_005296.1 541110 541337 R hypothetical protein complement(541110..541337) Rhodopseudomonas palustris CGA009 2691645 NP_945844.1 CDS RPA0491 NC_005296.1 541410 544691 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; MgpS ATP-dependent helicase complement(541410..544691) Rhodopseudomonas palustris CGA009 2688782 NP_945845.1 CDS RPA0492 NC_005296.1 544994 546031 R hypothetical protein complement(544994..546031) Rhodopseudomonas palustris CGA009 2691643 NP_945846.1 CDS rpmB NC_005296.1 546167 546472 D required for 70S ribosome assembly; 50S ribosomal protein L28 546167..546472 Rhodopseudomonas palustris CGA009 2688769 NP_945847.1 CDS RPA0494 NC_005296.1 546761 550042 D sensor histidine kinase 546761..550042 Rhodopseudomonas palustris CGA009 2689821 NP_945848.1 CDS RPA0495 NC_005296.1 550066 551214 R hypothetical protein complement(550066..551214) Rhodopseudomonas palustris CGA009 2688770 NP_945849.1 CDS cobT2 NC_005296.1 551239 553143 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cobalt chelatase pCobT subunit complement(551239..553143) Rhodopseudomonas palustris CGA009 2688764 NP_945850.1 CDS RPA0497 NC_005296.1 553140 553550 R N-acetyltransferase GCN5 complement(553140..553550) Rhodopseudomonas palustris CGA009 2689319 NP_945851.1 CDS cobS2 NC_005296.1 553555 554550 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cobalt chelatase pCobS small subunit complement(553555..554550) Rhodopseudomonas palustris CGA009 2688765 NP_945852.1 CDS RPA0499 NC_005296.1 554830 555447 D DedA family protein 554830..555447 Rhodopseudomonas palustris CGA009 2688761 NP_945853.1 CDS RPA0500 NC_005296.1 555512 556156 R molecular chaperone DnaJ complement(555512..556156) Rhodopseudomonas palustris CGA009 2688758 NP_945854.1 CDS RPA0501 NC_005296.1 556277 556546 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; BolA-like protein 556277..556546 Rhodopseudomonas palustris CGA009 2689312 NP_945855.1 CDS RPA0502 NC_005296.1 556564 557925 R HlyC/CorC family transporter complement(556564..557925) Rhodopseudomonas palustris CGA009 2689304 NP_945856.1 CDS aroB NC_005296.1 557973 559118 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(557973..559118) Rhodopseudomonas palustris CGA009 2689305 NP_945857.1 CDS aroK NC_005296.1 559129 559740 R catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase complement(559129..559740) Rhodopseudomonas palustris CGA009 2689302 NP_945858.1 CDS RPA0505 NC_005296.1 559870 560016 D hypothetical protein 559870..560016 Rhodopseudomonas palustris CGA009 2689285 NP_945859.1 CDS RPA0506 NC_005296.1 560033 561049 D tyrosine recombinase XerD 560033..561049 Rhodopseudomonas palustris CGA009 2689280 NP_945860.1 CDS RPA0507 NC_005296.1 561056 561631 R cytochrome b561 complement(561056..561631) Rhodopseudomonas palustris CGA009 2689278 NP_945861.1 CDS accA NC_005296.1 561895 562857 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 561895..562857 Rhodopseudomonas palustris CGA009 2689260 NP_945862.1 CDS RPA0509 NC_005296.1 563190 564665 D hypothetical protein 563190..564665 Rhodopseudomonas palustris CGA009 2689258 NP_945863.1 CDS secA NC_005296.1 564875 567715 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(564875..567715) Rhodopseudomonas palustris CGA009 2689245 NP_945864.1 CDS RPA0511 NC_005296.1 568058 568993 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; PpiC-type peptidyl-prolyl cis-trans isomerase 568058..568993 Rhodopseudomonas palustris CGA009 2689249 NP_945865.1 CDS mutS NC_005296.1 569086 571809 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(569086..571809) Rhodopseudomonas palustris CGA009 2689242 NP_945866.1 CDS pcaF NC_005296.1 571985 573193 D catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase 571985..573193 Rhodopseudomonas palustris CGA009 2689230 NP_945867.1 CDS FarB NC_005296.1 573372 574934 R efflux pump protein FarB complement(573372..574934) Rhodopseudomonas palustris CGA009 2689241 NP_945868.1 CDS RPA0515 NC_005296.1 574938 576107 R efflux pump protein FarA complement(574938..576107) Rhodopseudomonas palustris CGA009 2689219 NP_945869.1 CDS RPA0516 NC_005296.1 576100 576585 R MarR family transcriptional regulator complement(576100..576585) Rhodopseudomonas palustris CGA009 2693097 NP_945870.1 CDS RPA0517 NC_005296.1 576775 577272 D FUR family transcriptional regulator 576775..577272 Rhodopseudomonas palustris CGA009 2693121 NP_945871.1 CDS RPA0518 NC_005296.1 577437 578360 D DMT family permease 577437..578360 Rhodopseudomonas palustris CGA009 2693108 NP_945872.1 CDS ispG NC_005296.1 578344 579669 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 578344..579669 Rhodopseudomonas palustris CGA009 2689868 NP_945873.1 CDS nha NC_005296.1 579912 581564 R Na+/H+ antiporter complement(579912..581564) Rhodopseudomonas palustris CGA009 2689806 NP_945874.1 CDS RPA0521 NC_005296.1 581747 583456 D diguanylate cyclase/phosphodiesterase 581747..583456 Rhodopseudomonas palustris CGA009 2688771 NP_945875.1 CDS RPA0522 NC_005296.1 583474 583917 D photopigment and puc activator 583474..583917 Rhodopseudomonas palustris CGA009 2688767 NP_945876.1 CDS RPA0523 NC_005296.1 583928 584614 R hypothetical protein complement(583928..584614) Rhodopseudomonas palustris CGA009 2689271 NP_945877.1 CDS RPA0524 NC_005296.1 584622 585548 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; polyprenyl synthetase complement(584622..585548) Rhodopseudomonas palustris CGA009 2689270 NP_945878.1 CDS mtgA NC_005296.1 585650 586360 D glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 585650..586360 Rhodopseudomonas palustris CGA009 2688763 NP_945879.1 CDS rpmF NC_005296.1 586522 586704 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 586522..586704 Rhodopseudomonas palustris CGA009 2691644 NP_945880.1 CDS RPA0527 NC_005296.1 586947 587579 D hypothetical protein 586947..587579 Rhodopseudomonas palustris CGA009 2691641 NP_945881.1 CDS RPA0528 NC_005296.1 587596 588057 R hypothetical protein complement(587596..588057) Rhodopseudomonas palustris CGA009 2689264 NP_945882.1 CDS RPA0529 NC_005296.1 588149 589891 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; diguanylate cyclase/phosphodiesterase 588149..589891 Rhodopseudomonas palustris CGA009 2689262 NP_945883.1 CDS RPA0530 NC_005296.1 590022 590690 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; polyhydroxyalkanoate synthesis repressor PhaR complement(590022..590690) Rhodopseudomonas palustris CGA009 2689817 NP_945884.1 CDS RPA0531 NC_005296.1 590894 592072 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 590894..592072 Rhodopseudomonas palustris CGA009 2693149 NP_945885.1 CDS RPA0532 NC_005296.1 592255 592980 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acetoacetyl-CoA reductase 592255..592980 Rhodopseudomonas palustris CGA009 2689263 NP_945886.1 CDS RPA0533 NC_005296.1 593057 593923 D hypothetical protein 593057..593923 Rhodopseudomonas palustris CGA009 2689261 NP_945887.1 CDS RPA0534 NC_005296.1 593943 594464 R hypothetical protein complement(593943..594464) Rhodopseudomonas palustris CGA009 2693122 NP_945888.1 CDS hrpB NC_005296.1 594594 597071 R ATP-dependent helicase HrpB complement(594594..597071) Rhodopseudomonas palustris CGA009 2689314 NP_945889.1 CDS RPA0536 NC_005296.1 597245 598297 D acyltransferase 597245..598297 Rhodopseudomonas palustris CGA009 2691659 NP_945890.1 CDS RPA0537 NC_005296.1 598415 599974 R acetyl-CoA hydrolase complement(598415..599974) Rhodopseudomonas palustris CGA009 2689613 NP_945891.1 CDS RPA0538 NC_005296.1 600714 602168 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Omp2b porin complement(600714..602168) Rhodopseudomonas palustris CGA009 2689259 NP_945892.1 CDS RPA0539 NC_005296.1 602737 603270 D MarR family transcriptional regulator 602737..603270 Rhodopseudomonas palustris CGA009 2689251 NP_945893.1 CDS RPA0540 NC_005296.1 603265 604290 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(603265..604290) Rhodopseudomonas palustris CGA009 2689256 NP_945894.1 CDS RPA0541 NC_005296.1 604854 605402 D hypothetical protein 604854..605402 Rhodopseudomonas palustris CGA009 2688759 NP_945895.1 CDS RPA0542 NC_005296.1 605405 606457 R hypothetical protein complement(605405..606457) Rhodopseudomonas palustris CGA009 2689871 NP_945896.1 CDS RPA0543 NC_005296.1 606652 607179 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 606652..607179 Rhodopseudomonas palustris CGA009 2689869 NP_945897.1 CDS RPA0544 NC_005296.1 607333 607716 D hypothetical protein 607333..607716 Rhodopseudomonas palustris CGA009 2689866 NP_945898.1 CDS RPA0545 NC_005296.1 607713 608435 D LrgB-like protein 607713..608435 Rhodopseudomonas palustris CGA009 2689862 NP_945899.1 CDS RPA0546 NC_005296.1 608530 608994 D hypothetical protein 608530..608994 Rhodopseudomonas palustris CGA009 2691658 NP_945900.1 CDS RPA0547 NC_005296.1 608998 610074 R hypothetical protein complement(608998..610074) Rhodopseudomonas palustris CGA009 2689246 NP_945901.1 CDS RPA0548 NC_005296.1 610257 611417 D hypothetical protein 610257..611417 Rhodopseudomonas palustris CGA009 2689247 NP_945902.1 CDS ChrR NC_005296.1 611414 612076 R sensor protein ChrR cytochrome cycA regulator complement(611414..612076) Rhodopseudomonas palustris CGA009 2689232 NP_945903.1 CDS RPA0550 NC_005296.1 612073 612660 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(612073..612660) Rhodopseudomonas palustris CGA009 2691382 NP_945904.1 CDS RPA0551 NC_005296.1 613289 614170 R LysR family transcriptional regulator complement(613289..614170) Rhodopseudomonas palustris CGA009 2689238 NP_945905.1 CDS dctA1 NC_005296.1 614276 615583 D involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 614276..615583 Rhodopseudomonas palustris CGA009 2689358 NP_945906.1 CDS RPA0553 NC_005296.1 615621 616460 D hypothetical protein 615621..616460 Rhodopseudomonas palustris CGA009 2689228 NP_945907.1 CDS RPA0554 NC_005296.1 616457 616969 D catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 616457..616969 Rhodopseudomonas palustris CGA009 2689353 NP_945908.1 CDS RPA0555 NC_005296.1 617018 617614 R methyltransferase complement(617018..617614) Rhodopseudomonas palustris CGA009 2689704 NP_945909.1 CDS RPA0556 NC_005296.1 617758 618315 R HNH endonuclease complement(617758..618315) Rhodopseudomonas palustris CGA009 2689352 NP_945910.1 CDS cysK NC_005296.1 618596 619594 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cysteine synthase 618596..619594 Rhodopseudomonas palustris CGA009 2689604 NP_945911.1 CDS hemH NC_005296.1 619666 620583 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(619666..620583) Rhodopseudomonas palustris CGA009 2691372 NP_945912.1 CDS RPA0559 NC_005296.1 620654 621571 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; pirin complement(620654..621571) Rhodopseudomonas palustris CGA009 2689227 NP_945913.1 CDS MLYCD NC_005296.1 621701 623131 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; malonyl-CoA decarboxylase complement(621701..623131) Rhodopseudomonas palustris CGA009 2689225 NP_945914.1 CDS RPA0561 NC_005296.1 623297 623902 R hypothetical protein complement(623297..623902) Rhodopseudomonas palustris CGA009 2689223 NP_945915.1 CDS RPA0562 NC_005296.1 623978 625342 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; MmgE/PrpD family protein complement(623978..625342) Rhodopseudomonas palustris CGA009 2689584 NP_945916.1 CDS RPA0563 NC_005296.1 625468 626625 D hypothetical protein 625468..626625 Rhodopseudomonas palustris CGA009 2689583 NP_945917.1 CDS RPA0564 NC_005296.1 626630 627091 R hypothetical protein complement(626630..627091) Rhodopseudomonas palustris CGA009 2689857 NP_945918.1 CDS RPA0565 NC_005296.1 627895 629082 D esterase 627895..629082 Rhodopseudomonas palustris CGA009 2693143 NP_945919.1 CDS RPA0566 NC_005296.1 629211 629630 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 629211..629630 Rhodopseudomonas palustris CGA009 2689603 NP_945920.1 CDS RPA0567 NC_005296.1 629707 630684 R AraC family transcriptional regulator complement(629707..630684) Rhodopseudomonas palustris CGA009 2689599 NP_945921.1 CDS RPA0568 NC_005296.1 630945 631610 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hydrolase complement(630945..631610) Rhodopseudomonas palustris CGA009 2689875 NP_945922.1 CDS RPA0569 NC_005296.1 631700 632818 R hypothetical protein complement(631700..632818) Rhodopseudomonas palustris CGA009 2693139 NP_945923.1 CDS RPA0570 NC_005296.1 632974 633453 D hypothetical protein 632974..633453 Rhodopseudomonas palustris CGA009 2693133 NP_945924.1 CDS regR NC_005296.1 633579 634133 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Fis family transcriptional regulator complement(633579..634133) Rhodopseudomonas palustris CGA009 2689218 NP_945925.1 CDS regS NC_005296.1 634225 635547 R sensor signal transduction histidine kinase complement(634225..635547) Rhodopseudomonas palustris CGA009 2688785 NP_945926.1 CDS RPA0573 NC_005296.1 635655 636452 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter ATP-binding protein 635655..636452 Rhodopseudomonas palustris CGA009 2689214 NP_945927.1 CDS RPA0574 NC_005296.1 636449 637279 D hypothetical protein 636449..637279 Rhodopseudomonas palustris CGA009 2689653 NP_945928.1 CDS RPA0575 NC_005296.1 637418 638746 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; polyhydroxyalkanoate depolymerase 637418..638746 Rhodopseudomonas palustris CGA009 2689213 NP_945929.1 CDS RPA0576 NC_005296.1 639003 639836 D hypothetical protein 639003..639836 Rhodopseudomonas palustris CGA009 2689651 NP_945930.1 CDS RPA0577 NC_005296.1 640106 642052 R penicillin-binding protein 1A complement(640106..642052) Rhodopseudomonas palustris CGA009 2689618 NP_945931.1 CDS RPA0578 NC_005296.1 642505 642759 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 642505..642759 Rhodopseudomonas palustris CGA009 2689852 NP_945932.1 CDS RPA0579 NC_005296.1 642855 643067 R hypothetical protein complement(642855..643067) Rhodopseudomonas palustris CGA009 2689418 NP_945933.1 CDS RPA0580 NC_005296.1 643359 644579 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched chain amino acid ABC transporter amino acid-binding protein complement(643359..644579) Rhodopseudomonas palustris CGA009 2689208 NP_945934.1 CDS RPA0581 NC_005296.1 644730 645092 R hypothetical protein complement(644730..645092) Rhodopseudomonas palustris CGA009 2689581 NP_945935.1 CDS RPA0582 NC_005296.1 645175 645603 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 645175..645603 Rhodopseudomonas palustris CGA009 2688783 NP_945936.1 CDS RPA0583 NC_005296.1 645698 648439 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; sensor histidine kinase 645698..648439 Rhodopseudomonas palustris CGA009 2689206 NP_945937.1 CDS RPA0584 NC_005296.1 648631 650967 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; RNA binding S1 648631..650967 Rhodopseudomonas palustris CGA009 2689412 NP_945938.1 CDS RPA0585 NC_005296.1 650990 652144 R chromate transporter complement(650990..652144) Rhodopseudomonas palustris CGA009 2689414 NP_945939.1 CDS RPA0586 NC_005296.1 652210 653103 R short-chain dehydrogenase/reductase SDR complement(652210..653103) Rhodopseudomonas palustris CGA009 2689119 NP_945940.1 CDS RPA0587 NC_005296.1 653133 654614 R cationic amino acid transporter complement(653133..654614) Rhodopseudomonas palustris CGA009 2693082 NP_945941.1 CDS RPA0588 NC_005296.1 654655 655335 R TetR family transcriptional regulator complement(654655..655335) Rhodopseudomonas palustris CGA009 2692898 NP_945942.1 CDS RPA0589 NC_005296.1 655430 657097 D acyl-CoA dehydrogenase 655430..657097 Rhodopseudomonas palustris CGA009 2692922 NP_945943.1 CDS prc NC_005296.1 657260 658600 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; carboxyl-terminal protease complement(657260..658600) Rhodopseudomonas palustris CGA009 2693013 NP_945944.1 CDS glnD NC_005296.1 658764 661613 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(658764..661613) Rhodopseudomonas palustris CGA009 2692917 NP_945945.1 CDS argJ NC_005296.1 661788 663029 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 661788..663029 Rhodopseudomonas palustris CGA009 2693017 NP_945946.1 CDS RPA0593 NC_005296.1 663026 663523 D hypothetical protein 663026..663523 Rhodopseudomonas palustris CGA009 2692593 NP_945947.1 CDS mutT NC_005296.1 663531 663932 D mutator protein mutT 663531..663932 Rhodopseudomonas palustris CGA009 2689381 NP_945948.1 CDS RPA0595 NC_005296.1 664109 664933 R hypothetical protein complement(664109..664933) Rhodopseudomonas palustris CGA009 2692976 NP_945949.1 CDS RPA0596 NC_005296.1 664960 665259 R hypothetical protein complement(664960..665259) Rhodopseudomonas palustris CGA009 2689572 NP_945950.1 CDS RPA0597 NC_005296.1 665365 666180 D phosphoribosyltransferase 665365..666180 Rhodopseudomonas palustris CGA009 2692950 NP_945951.1 CDS RPA0598 NC_005296.1 666223 666498 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glutaredoxin GrxC 666223..666498 Rhodopseudomonas palustris CGA009 2689935 NP_945952.1 CDS RPA0599 NC_005296.1 666495 667370 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 666495..667370 Rhodopseudomonas palustris CGA009 2692979 NP_945953.1 CDS RPA0600 NC_005296.1 667367 667861 D hypothetical protein 667367..667861 Rhodopseudomonas palustris CGA009 2692909 NP_945954.1 CDS RPA0601 NC_005296.1 668083 668520 D DMT family permease 668083..668520 Rhodopseudomonas palustris CGA009 2692901 NP_945955.1 CDS RPA0602 NC_005296.1 668521 669420 R DMT family permease complement(668521..669420) Rhodopseudomonas palustris CGA009 2689533 NP_945956.1 CDS ubiG NC_005296.1 669548 670330 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(669548..670330) Rhodopseudomonas palustris CGA009 2692775 NP_945957.1 CDS lysC NC_005296.1 670503 671756 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 670503..671756 Rhodopseudomonas palustris CGA009 2692928 NP_945958.1 CDS ptsP NC_005296.1 671957 674359 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 671957..674359 Rhodopseudomonas palustris CGA009 2692864 NP_945959.1 CDS prfA NC_005296.1 674416 675501 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 674416..675501 Rhodopseudomonas palustris CGA009 2689380 NP_945960.1 CDS hemK NC_005296.1 675498 676367 D HemK family modification methylase 675498..676367 Rhodopseudomonas palustris CGA009 2689363 NP_945961.1 CDS RPA0608 NC_005296.1 676819 677514 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 676819..677514 Rhodopseudomonas palustris CGA009 2689037 NP_945962.1 CDS RPA0609 NC_005296.1 677617 678396 R type 11 methyltransferase complement(677617..678396) Rhodopseudomonas palustris CGA009 2692891 NP_945963.1 CDS RPA0610 NC_005296.1 678565 679332 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hydroxyacylglutathione hydrolase 678565..679332 Rhodopseudomonas palustris CGA009 2692749 NP_945964.1 CDS RPA0611 NC_005296.1 679329 679766 D hypothetical protein 679329..679766 Rhodopseudomonas palustris CGA009 2689791 NP_945965.1 CDS RPA0612 NC_005296.1 679887 680825 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; PfkB protein complement(679887..680825) Rhodopseudomonas palustris CGA009 2692875 NP_945966.1 CDS RPA0613 NC_005296.1 680822 681754 R NUDIX hydrolase complement(680822..681754) Rhodopseudomonas palustris CGA009 2689905 NP_945967.1 CDS RPA0614 NC_005296.1 681759 682256 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; histidine triad (HIT) protein complement(681759..682256) Rhodopseudomonas palustris CGA009 2689384 NP_945968.1 CDS dnaX NC_005296.1 682649 684520 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 682649..684520 Rhodopseudomonas palustris CGA009 2692691 NP_945969.1 CDS RPA0616 NC_005296.1 684542 684862 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 684542..684862 Rhodopseudomonas palustris CGA009 2692740 NP_945970.1 CDS recR NC_005296.1 684958 685560 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 684958..685560 Rhodopseudomonas palustris CGA009 2692736 NP_945971.1 CDS RPA0618 NC_005296.1 685580 686008 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 685580..686008 Rhodopseudomonas palustris CGA009 2692727 NP_945972.1 CDS ampG NC_005296.1 686049 687347 R E. coli beta lactamase (AmpC) regulator; major facilitator transporter complement(686049..687347) Rhodopseudomonas palustris CGA009 2692754 NP_945973.1 CDS RPA0620 NC_005296.1 687496 688728 R hypothetical protein complement(687496..688728) Rhodopseudomonas palustris CGA009 2692858 NP_945974.1 CDS def NC_005296.1 688848 689375 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 688848..689375 Rhodopseudomonas palustris CGA009 2692860 NP_945975.1 CDS fmt NC_005296.1 689454 690386 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 689454..690386 Rhodopseudomonas palustris CGA009 2692848 NP_945976.1 CDS truA NC_005296.1 690564 691310 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 690564..691310 Rhodopseudomonas palustris CGA009 2692836 NP_945977.1 CDS dapE NC_005296.1 691642 692805 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(691642..692805) Rhodopseudomonas palustris CGA009 2688853 NP_945978.1 CDS RPA0625 NC_005296.1 692805 693278 R hypothetical protein complement(692805..693278) Rhodopseudomonas palustris CGA009 2692734 NP_945979.1 CDS dapD NC_005296.1 693297 694142 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(693297..694142) Rhodopseudomonas palustris CGA009 2692704 NP_945980.1 CDS RPA0627 NC_005296.1 694327 695028 R haloacid dehalogenase complement(694327..695028) Rhodopseudomonas palustris CGA009 2692715 NP_945981.1 CDS RPA0628 NC_005296.1 695025 696146 R hypothetical protein complement(695025..696146) Rhodopseudomonas palustris CGA009 2692770 NP_945982.1 CDS argB NC_005296.1 696146 697042 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(696146..697042) Rhodopseudomonas palustris CGA009 2692700 NP_945983.1 CDS RPA0630 NC_005296.1 697167 697535 R hypothetical protein complement(697167..697535) Rhodopseudomonas palustris CGA009 2691468 NP_945984.1 CDS engB NC_005296.1 697535 698185 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(697535..698185) Rhodopseudomonas palustris CGA009 2692765 NP_945985.1 CDS RPA0632 NC_005296.1 698337 700205 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(698337..700205) Rhodopseudomonas palustris CGA009 2691451 NP_945986.1 CDS rnpA NC_005296.1 700222 700563 R ribonuclease P protein component complement(700222..700563) Rhodopseudomonas palustris CGA009 2692722 NP_945987.1 CDS rpmH NC_005296.1 700587 700721 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(700587..700721) Rhodopseudomonas palustris CGA009 2692665 NP_945988.1 CDS RPA0635 NC_005296.1 701052 702530 D sensor histidine kinase 701052..702530 Rhodopseudomonas palustris CGA009 2692648 NP_945989.1 CDS RPA0636 NC_005296.1 702970 703479 R hypothetical protein complement(702970..703479) Rhodopseudomonas palustris CGA009 2692459 NP_945990.1 CDS RPA0637 NC_005296.1 703506 704834 R hypothetical protein complement(703506..704834) Rhodopseudomonas palustris CGA009 2692556 NP_945991.1 CDS RPA0638 NC_005296.1 704911 707313 R hypothetical protein complement(704911..707313) Rhodopseudomonas palustris CGA009 2692677 NP_945992.1 CDS sigE NC_005296.1 707816 708514 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 707816..708514 Rhodopseudomonas palustris CGA009 2692666 NP_945993.1 CDS fliC NC_005296.1 708657 709481 D flagellin 708657..709481 Rhodopseudomonas palustris CGA009 2691446 NP_945994.1 CDS fliD NC_005296.1 709543 711258 D flagellar hook-associated protein 2 FliD 709543..711258 Rhodopseudomonas palustris CGA009 2692485 NP_945995.1 CDS RPA0642 NC_005296.1 711258 711650 D hypothetical protein 711258..711650 Rhodopseudomonas palustris CGA009 2692643 NP_945996.1 CDS RPA0643 NC_005296.1 711650 712045 D hypothetical protein 711650..712045 Rhodopseudomonas palustris CGA009 2692694 NP_945997.1 CDS flgD NC_005296.1 712294 713091 D basal-body rod modification protein flgD 712294..713091 Rhodopseudomonas palustris CGA009 2692369 NP_945998.1 CDS flgE NC_005296.1 713111 714376 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 713111..714376 Rhodopseudomonas palustris CGA009 2692686 NP_945999.1 CDS RPA0646 NC_005296.1 714382 714639 D hypothetical protein 714382..714639 Rhodopseudomonas palustris CGA009 2692649 NP_946000.1 CDS RPA0647 NC_005296.1 714655 715116 D hypothetical protein 714655..715116 Rhodopseudomonas palustris CGA009 2692575 NP_946001.1 CDS flgK1 NC_005296.1 715138 716901 D flagellar hook-associated protein 1 FlgK 715138..716901 Rhodopseudomonas palustris CGA009 2692429 NP_946002.1 CDS flgL NC_005296.1 716917 717828 D with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL 716917..717828 Rhodopseudomonas palustris CGA009 2692597 NP_946003.1 CDS badK NC_005296.1 717848 718624 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cyclohex-1-ene-1-carboxyl-CoA hydratase complement(717848..718624) Rhodopseudomonas palustris CGA009 2692580 NP_946004.1 CDS aliA NC_005296.1 718652 720295 R AliA; in Rhodopseudomonas palustris, this enzyme was found to act on 3-chlorobenzoate and allows the organism to grow on this substrate; cyclohexanecarboxylate-CoA ligase complement(718652..720295) Rhodopseudomonas palustris CGA009 2692160 NP_946005.1 CDS aliB NC_005296.1 720352 721503 R cyclohexanecarboxyl-CoA dehydrogenase complement(720352..721503) Rhodopseudomonas palustris CGA009 2689019 NP_946006.1 CDS badI NC_005296.1 721568 722350 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 2-ketocyclohexanecarboxyl-CoA hydrolase complement(721568..722350) Rhodopseudomonas palustris CGA009 2692496 NP_946007.1 CDS badH NC_005296.1 722381 723148 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase complement(722381..723148) Rhodopseudomonas palustris CGA009 2692564 NP_946008.1 CDS badR NC_005296.1 723271 723798 D benzoate anaerobic degradation transcription regulator BadR 723271..723798 Rhodopseudomonas palustris CGA009 2692633 NP_946009.1 CDS badC NC_005296.1 723872 724891 D alcohol dehydrogenase 723872..724891 Rhodopseudomonas palustris CGA009 2692631 NP_946010.1 CDS badD NC_005296.1 725062 726246 D benzoyl-CoA reductase subunit 725062..726246 Rhodopseudomonas palustris CGA009 2689078 NP_946011.1 CDS badE NC_005296.1 726243 727553 D benzoyl-CoA reductase subunit 726243..727553 Rhodopseudomonas palustris CGA009 2692639 NP_946012.1 CDS badF NC_005296.1 727565 728878 D benzoyl-CoA reductase subunit 727565..728878 Rhodopseudomonas palustris CGA009 2692365 NP_946013.1 CDS badG NC_005296.1 728971 729804 D benzoyl-CoA reductase subunit 728971..729804 Rhodopseudomonas palustris CGA009 2692625 NP_946014.1 CDS badA NC_005296.1 729921 731495 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; benzoate-CoA ligase 729921..731495 Rhodopseudomonas palustris CGA009 2692583 NP_946015.1 CDS badB NC_005296.1 731512 731757 D ferredoxin 731512..731757 Rhodopseudomonas palustris CGA009 2692554 NP_946016.1 CDS badM NC_005296.1 731806 732276 R transcriptional regulator BadM complement(731806..732276) Rhodopseudomonas palustris CGA009 2692371 NP_946017.1 CDS badL NC_005296.1 732331 732810 R acetyltransferase complement(732331..732810) Rhodopseudomonas palustris CGA009 2692490 NP_946018.1 CDS hbaH NC_005296.1 732909 733631 R ABC transporter ATP-binding protein complement(732909..733631) Rhodopseudomonas palustris CGA009 2692548 NP_946019.1 CDS hbaG NC_005296.1 733628 735415 R ABC transporter ATP-binding protein complement(733628..735415) Rhodopseudomonas palustris CGA009 2692449 NP_946020.1 CDS hbaF NC_005296.1 735418 736278 R inner-membrane translocator complement(735418..736278) Rhodopseudomonas palustris CGA009 2692578 NP_946021.1 CDS hbaE NC_005296.1 736364 737542 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter subunit substrate-binding component complement(736364..737542) Rhodopseudomonas palustris CGA009 2692506 NP_946022.1 CDS hbaA NC_005296.1 737719 739338 R 4-hydroxybenzoate-CoA ligase complement(737719..739338) Rhodopseudomonas palustris CGA009 2691277 NP_946023.1 CDS hbaB NC_005296.1 739505 739996 D 4-hydroxybenzoyl-CoA reductase subunit 739505..739996 Rhodopseudomonas palustris CGA009 2692517 NP_946024.1 CDS hbaC NC_005296.1 739993 742326 D 4-hydroxybenzoyl-CoA reductase subunit 739993..742326 Rhodopseudomonas palustris CGA009 2688970 NP_946025.1 CDS hbaD NC_005296.1 742323 743306 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 4-hydroxybenzoyl-CoA reductase subunit 742323..743306 Rhodopseudomonas palustris CGA009 2692479 NP_946026.1 CDS hbaR NC_005296.1 743331 744056 R hydroxybenzoate anaerobic degradation regulatory protein HbaR complement(743331..744056) Rhodopseudomonas palustris CGA009 2692455 NP_946027.1 CDS RPA0674 NC_005296.1 744248 745360 D alcohol dehydrogenase 744248..745360 Rhodopseudomonas palustris CGA009 2692475 NP_946028.1 CDS RPA0675 NC_005296.1 745396 746217 D alpha/beta hydrolase 745396..746217 Rhodopseudomonas palustris CGA009 2692498 NP_946029.1 CDS RPA0676 NC_005296.1 746346 748040 D cleaves the ring of 2,3-dihydro-2,3-dihydroxybenzoyl-CoA forming 6-hydroxy-3-hexenoyl-CoA; benzoyl-CoA-dihydrodiol lyase 746346..748040 Rhodopseudomonas palustris CGA009 2692493 NP_946030.1 CDS RPA0677 NC_005296.1 748211 749662 D hypothetical protein 748211..749662 Rhodopseudomonas palustris CGA009 2692324 NP_946031.2 CDS gltA NC_005296.1 749989 752973 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein 749989..752973 Rhodopseudomonas palustris CGA009 2692460 NP_946032.1 CDS RPA0679 NC_005296.1 752997 755030 R hypothetical protein complement(752997..755030) Rhodopseudomonas palustris CGA009 2692422 NP_946033.1 CDS RPA0680 NC_005296.1 755097 755714 R TetR family transcriptional regulator complement(755097..755714) Rhodopseudomonas palustris CGA009 2692461 NP_946034.1 CDS RPA0681 NC_005296.1 755856 756890 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; permease 755856..756890 Rhodopseudomonas palustris CGA009 2692134 NP_946035.1 CDS RPA0682 NC_005296.1 756887 759601 D ABC transporter ATP-binding protein 756887..759601 Rhodopseudomonas palustris CGA009 2688755 NP_946036.1 CDS RPA0683 NC_005296.1 759598 760731 D ABC transporter permease 759598..760731 Rhodopseudomonas palustris CGA009 2692189 NP_946037.1 CDS RPA0684 NC_005296.1 760739 760918 R hypothetical protein complement(760739..760918) Rhodopseudomonas palustris CGA009 2692222 NP_946038.1 CDS RPA0685 NC_005296.1 761061 761936 D IclR family transcriptional regulator 761061..761936 Rhodopseudomonas palustris CGA009 2692259 NP_946039.1 CDS RPA0686 NC_005296.1 762097 763071 D hypothetical protein 762097..763071 Rhodopseudomonas palustris CGA009 2692426 NP_946040.1 CDS RPA0687 NC_005296.1 763121 763768 R hypothetical protein complement(763121..763768) Rhodopseudomonas palustris CGA009 2692420 NP_946041.1 CDS phnN NC_005296.1 763749 764333 R phosphonate metabolism 1,5-bisphosphokinase (PRPP-forming) PhnN complement(763749..764333) Rhodopseudomonas palustris CGA009 2692378 NP_946042.1 CDS phnM1 NC_005296.1 764330 765466 R E. coli PhnM, HisM-like integral membrane protein; phosphonate utilization (C-P lyase) component complement(764330..765466) Rhodopseudomonas palustris CGA009 2692407 NP_946043.1 CDS phnL NC_005296.1 765505 766209 R phosphonate ABC transporter ATP-binding protein complement(765505..766209) Rhodopseudomonas palustris CGA009 2692397 NP_946044.1 CDS phnK NC_005296.1 766215 767033 R phosphonate C-P lyase system protein PhnK complement(766215..767033) Rhodopseudomonas palustris CGA009 2692400 NP_946045.1 CDS phnJ NC_005296.1 767026 767904 R phosphonate metabolism PhnJ complement(767026..767904) Rhodopseudomonas palustris CGA009 2692351 NP_946046.1 CDS phnI NC_005296.1 767901 768998 R phosphonate metabolism protein complement(767901..768998) Rhodopseudomonas palustris CGA009 2692344 NP_946047.1 CDS phnH NC_005296.1 769002 769604 R carbon-phosphorus lyase complex subunit complement(769002..769604) Rhodopseudomonas palustris CGA009 2692352 NP_946048.1 CDS phnG NC_005296.1 769607 770080 R phosphonate metabolism PhnG complement(769607..770080) Rhodopseudomonas palustris CGA009 2692343 NP_946049.1 CDS RPA0696 NC_005296.1 770192 770920 D GntR family transcriptional regulator 770192..770920 Rhodopseudomonas palustris CGA009 2692303 NP_946050.1 CDS phnE1 NC_005296.1 771245 772111 R phosphonate ABC transporter permease complement(771245..772111) Rhodopseudomonas palustris CGA009 2692143 NP_946051.1 CDS phnE2 NC_005296.1 772108 772989 R phosphonate ABC transporter permease complement(772108..772989) Rhodopseudomonas palustris CGA009 2691425 NP_946052.1 CDS phnD NC_005296.1 773058 773966 R phosphonate ABC transporter periplasmic phosphonate-binding protein complement(773058..773966) Rhodopseudomonas palustris CGA009 2692372 NP_946053.1 CDS phnC NC_005296.1 774076 774888 R phosphonate ABC transporter ATP-binding protein complement(774076..774888) Rhodopseudomonas palustris CGA009 2692335 NP_946054.1 CDS RPA0701 NC_005296.1 775029 775748 D acetyltransferase 775029..775748 Rhodopseudomonas palustris CGA009 2692231 NP_946055.1 CDS phnM2 NC_005296.1 775745 776938 D E. coli PhnM, HisM-like integral membrane protein; phosphonate ABC transporter permease 775745..776938 Rhodopseudomonas palustris CGA009 2692314 NP_946056.1 CDS RPA0703 NC_005296.1 776961 777665 D hypothetical protein 776961..777665 Rhodopseudomonas palustris CGA009 2692240 NP_946057.1 CDS RPA0704 NC_005296.1 777662 778642 R hypothetical protein complement(777662..778642) Rhodopseudomonas palustris CGA009 2692331 NP_946058.1 CDS RPA0705 NC_005296.1 778886 779080 D hypothetical protein 778886..779080 Rhodopseudomonas palustris CGA009 2692219 NP_946059.1 CDS RPA0706 NC_005296.1 779578 780054 D endonuclease III 779578..780054 Rhodopseudomonas palustris CGA009 2691332 NP_946060.1 CDS cutA NC_005296.1 780032 780355 R periplasmic divalent cation resistance protein CutA complement(780032..780355) Rhodopseudomonas palustris CGA009 2692317 NP_946061.1 CDS RPA0708 NC_005296.1 780767 781288 D hypothetical protein 780767..781288 Rhodopseudomonas palustris CGA009 2692326 NP_946062.1 CDS RPA0709 NC_005296.1 781403 781948 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 781403..781948 Rhodopseudomonas palustris CGA009 2692256 NP_946063.1 CDS RPA0710 NC_005296.1 781991 782251 D hypothetical protein 781991..782251 Rhodopseudomonas palustris CGA009 2692195 NP_946064.1 CDS RPA0711 NC_005296.1 782498 783169 R nitroreductase family protein complement(782498..783169) Rhodopseudomonas palustris CGA009 2692252 NP_946065.1 CDS cobT NC_005296.1 783196 784251 R nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(783196..784251) Rhodopseudomonas palustris CGA009 2692254 NP_946066.1 CDS RPA0713 NC_005296.1 784566 785087 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 784566..785087 Rhodopseudomonas palustris CGA009 2692036 NP_946067.1 CDS cobU NC_005296.1 785084 785614 D bifunctional cobinamide kinase cobinamide phosphate guanylyltransferase protein 785084..785614 Rhodopseudomonas palustris CGA009 2692274 NP_946068.1 CDS cobW NC_005296.1 785618 786622 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cobalamin synthesis protein cobW 785618..786622 Rhodopseudomonas palustris CGA009 2692237 NP_946069.1 CDS cobN NC_005296.1 786757 790506 D with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN 786757..790506 Rhodopseudomonas palustris CGA009 2692059 NP_946070.1 CDS cobO NC_005296.1 790503 791129 D catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 790503..791129 Rhodopseudomonas palustris CGA009 2692258 NP_946071.1 CDS cobQ1 NC_005296.1 791277 792761 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 791277..792761 Rhodopseudomonas palustris CGA009 2692010 NP_946072.1 CDS cobD NC_005296.1 792734 793705 R cobalamin biosynthesis protein CobD complement(792734..793705) Rhodopseudomonas palustris CGA009 2692155 NP_946073.1 CDS RPA0720 NC_005296.1 793707 794519 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cobalamin/Fe3+-siderophores ABC transporter periplasmic protein complement(793707..794519) Rhodopseudomonas palustris CGA009 2692192 NP_946074.1 CDS cobC NC_005296.1 794583 795572 D cobalamin biosynthetic protein CobC 794583..795572 Rhodopseudomonas palustris CGA009 2692209 NP_946075.1 CDS fecE NC_005296.1 795584 796363 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; iron(III) dicitrate ABC transporter ATP-binding protein FecE complement(795584..796363) Rhodopseudomonas palustris CGA009 2691997 NP_946076.1 CDS RPA0723 NC_005296.1 796360 797385 R hemin ABC transporter permease complement(796360..797385) Rhodopseudomonas palustris CGA009 2692161 NP_946077.1 CDS nxiA NC_005296.1 797393 798451 R high-affinity nickel-transport protein complement(797393..798451) Rhodopseudomonas palustris CGA009 2692228 NP_946078.1 CDS sugE NC_005296.1 798784 799107 R E. coli sugE is a multicopy suppressor of groEL mutations. This gene cannot encode the long form of the protein (sugEL).; chaperone complement(798784..799107) Rhodopseudomonas palustris CGA009 2692092 NP_946079.1 CDS btaB NC_005296.1 799104 799841 R S-adenosylmethionine:diacylgycerolhomoserine-N- methyltransferase BtaB complement(799104..799841) Rhodopseudomonas palustris CGA009 2692178 NP_946080.1 CDS RPA0727 NC_005296.1 799994 801217 D S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyltransferase 799994..801217 Rhodopseudomonas palustris CGA009 2692144 NP_946081.1 CDS RPA0728 NC_005296.1 801773 803179 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 801773..803179 Rhodopseudomonas palustris CGA009 2692058 NP_946082.1 CDS RPA0729 NC_005296.1 803190 803768 D hypothetical protein 803190..803768 Rhodopseudomonas palustris CGA009 2692099 NP_946083.1 CDS RPA0730 NC_005296.1 803781 804470 D hypothetical protein 803781..804470 Rhodopseudomonas palustris CGA009 2692090 NP_946084.1 CDS RPA0731 NC_005296.1 805004 805897 D LysR family transcriptional regulator 805004..805897 Rhodopseudomonas palustris CGA009 2692116 NP_946085.1 CDS fdsG NC_005296.1 806161 806631 D catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor; formate dehydrogenase subunit gamma 806161..806631 Rhodopseudomonas palustris CGA009 2692088 NP_946086.1 CDS fdsB NC_005296.1 806628 808184 D NADH dehydrogenase (quinone) 806628..808184 Rhodopseudomonas palustris CGA009 2692080 NP_946087.1 CDS fdsA NC_005296.1 808197 811043 D formate dehydrogenase subunit alpha 808197..811043 Rhodopseudomonas palustris CGA009 2692108 NP_946088.1 CDS fdsC NC_005296.1 811043 811873 D involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 811043..811873 Rhodopseudomonas palustris CGA009 2692135 NP_946089.1 CDS fdsD NC_005296.1 811863 812078 D NAD-dependent formate dehydrogenase subunit delta 811863..812078 Rhodopseudomonas palustris CGA009 2692038 NP_946090.1 CDS RPA0737 NC_005296.1 812088 813791 D MFS superfamily oxalate/formate antiporter 812088..813791 Rhodopseudomonas palustris CGA009 2692117 NP_946091.1 CDS RPA0738 NC_005296.1 813898 815307 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; L-sorbosone dehydrogenase 813898..815307 Rhodopseudomonas palustris CGA009 2692009 NP_946092.1 CDS cyc NC_005296.1 815452 816042 D cytochrome c 815452..816042 Rhodopseudomonas palustris CGA009 2692077 NP_946093.1 CDS RPA0740 NC_005296.1 816117 817226 D acyl-CoA dehydrogenase 816117..817226 Rhodopseudomonas palustris CGA009 2692082 NP_946094.1 CDS RPA0741 NC_005296.1 817223 818170 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 817223..818170 Rhodopseudomonas palustris CGA009 2688909 NP_946095.1 CDS RPA0742 NC_005296.1 818170 819561 D hypothetical protein 818170..819561 Rhodopseudomonas palustris CGA009 2692086 NP_946096.1 CDS RPA0743 NC_005296.1 819739 821265 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acid-CoA ligase 819739..821265 Rhodopseudomonas palustris CGA009 2692039 NP_946097.1 CDS RPA0744 NC_005296.1 821440 821724 R high potential iron sulfur protein complement(821440..821724) Rhodopseudomonas palustris CGA009 2692013 NP_946098.1 CDS RPA0745 NC_005296.1 821865 824297 R outer membrane protein complement(821865..824297) Rhodopseudomonas palustris CGA009 2692056 NP_946099.1 CDS RPA0746 NC_005296.1 824397 826001 R Shewanella putrefaciens homolog is involved in metal reduction. Homology is only in C-terminal 60% of predicted protein.; deca-heme c-type cytochrome complement(824397..826001) Rhodopseudomonas palustris CGA009 2691772 NP_946100.1 CDS cysA NC_005296.1 826776 827822 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; sulfate transport system permease 1 complement(826776..827822) Rhodopseudomonas palustris CGA009 2692045 NP_946101.1 CDS cysW NC_005296.1 827812 828726 R sulfate ABC transporter permease complement(827812..828726) Rhodopseudomonas palustris CGA009 2692017 NP_946102.1 CDS cysT NC_005296.1 828731 829567 R sulfate ABC transporter permease complement(828731..829567) Rhodopseudomonas palustris CGA009 2691930 NP_946103.1 CDS sbp NC_005296.1 829860 830849 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; thiosulfate-binding protein complement(829860..830849) Rhodopseudomonas palustris CGA009 2692048 NP_946104.1 CDS cysH NC_005296.1 830974 831714 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(830974..831714) Rhodopseudomonas palustris CGA009 2691907 NP_946105.1 CDS cysD NC_005296.1 832014 832883 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 832014..832883 Rhodopseudomonas palustris CGA009 2688892 NP_946106.1 CDS cysN NC_005296.1 832905 834815 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; bifunctional ATP-sulfurylase large subunit/adenylyl sulfate kinase CysN/CysC 832905..834815 Rhodopseudomonas palustris CGA009 2691835 NP_946107.1 CDS RPA0754 NC_005296.1 834822 836258 R signal transduction histidine kinase complement(834822..836258) Rhodopseudomonas palustris CGA009 2691970 NP_946108.1 CDS RPA0755 NC_005296.1 836321 837298 R oligopeptide ABC transporter ATP-binding protein complement(836321..837298) Rhodopseudomonas palustris CGA009 2691721 NP_946109.1 CDS RPA0756 NC_005296.1 837299 838711 R amidase complement(837299..838711) Rhodopseudomonas palustris CGA009 2691980 NP_946110.1 CDS RPA0757 NC_005296.1 838708 838902 R hypothetical protein complement(838708..838902) Rhodopseudomonas palustris CGA009 2691934 NP_946111.1 CDS RPA0758 NC_005296.1 838916 839974 R oligopeptide ABC transporter ATP-binding protein complement(838916..839974) Rhodopseudomonas palustris CGA009 2691933 NP_946112.1 CDS RPA0759 NC_005296.1 839979 840884 R oligopeptide ABC transporter permease complement(839979..840884) Rhodopseudomonas palustris CGA009 2691957 NP_946113.1 CDS RPA0760 NC_005296.1 840889 841842 R oligopeptide ABC transporter permease complement(840889..841842) Rhodopseudomonas palustris CGA009 2691984 NP_946114.1 CDS RPA0761 NC_005296.1 842040 843701 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; oligopeptide ABC transporter periplasmic binding protein component complement(842040..843701) Rhodopseudomonas palustris CGA009 2691826 NP_946115.1 CDS RPA0762 NC_005296.1 843889 845487 D oligopeptide ABC transporter periplasmic binding protein component 843889..845487 Rhodopseudomonas palustris CGA009 2691867 NP_946116.1 CDS RPA0763 NC_005296.1 845640 846434 D methyltransferase 845640..846434 Rhodopseudomonas palustris CGA009 2691919 NP_946117.1 CDS RPA0764 NC_005296.1 846490 846924 R hypothetical protein complement(846490..846924) Rhodopseudomonas palustris CGA009 2691953 NP_946118.1 CDS RPA0765 NC_005296.1 846945 849308 R outer membrane receptor for iron transport complement(846945..849308) Rhodopseudomonas palustris CGA009 2691858 NP_946119.1 CDS RPA0766 NC_005296.1 849702 850409 D Crp/Fnr family transcriptional regulator 849702..850409 Rhodopseudomonas palustris CGA009 2691902 NP_946120.1 CDS RPA0767 NC_005296.1 850515 851456 D diguanylate cyclase 850515..851456 Rhodopseudomonas palustris CGA009 2691894 NP_946121.1 CDS RPA0768 NC_005296.1 851947 852750 D transposase 851947..852750 Rhodopseudomonas palustris CGA009 2689147 NP_946122.1 CDS RPA0769 NC_005296.1 853002 853823 D hypothetical protein 853002..853823 Rhodopseudomonas palustris CGA009 2691873 NP_946123.1 CDS RPA0770 NC_005296.1 853839 854762 R integrase catalytic subunit complement(853839..854762) Rhodopseudomonas palustris CGA009 2691256 NP_946124.1 CDS RPA0771 NC_005296.1 854756 855022 R hypothetical protein complement(854756..855022) Rhodopseudomonas palustris CGA009 2691783 NP_946125.1 CDS RPA0772 NC_005296.1 855099 856412 D pentapeptide repeat-containing protein 855099..856412 Rhodopseudomonas palustris CGA009 2691886 NP_946126.1 CDS RPA0773 NC_005296.1 856721 857179 R hypothetical protein complement(856721..857179) Rhodopseudomonas palustris CGA009 2691865 NP_946127.1 CDS RPA0774 NC_005296.1 857784 858209 D hypothetical protein 857784..858209 Rhodopseudomonas palustris CGA009 2691829 NP_946128.1 CDS RPA0775 NC_005296.1 858557 859069 D hypothetical protein 858557..859069 Rhodopseudomonas palustris CGA009 2691819 NP_946129.1 CDS RPA0776 NC_005296.1 859102 860694 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; gamma-glutamyltranspeptidase complement(859102..860694) Rhodopseudomonas palustris CGA009 2691817 NP_946130.1 CDS RPA0777 NC_005296.1 860813 863527 R diguanylate cyclase/phosphodiesterase complement(860813..863527) Rhodopseudomonas palustris CGA009 2691838 NP_946131.1 CDS RPA0778 NC_005296.1 863776 864177 R hypothetical protein complement(863776..864177) Rhodopseudomonas palustris CGA009 2691823 NP_946132.1 CDS RPA0779 NC_005296.1 864609 864803 D hypothetical protein 864609..864803 Rhodopseudomonas palustris CGA009 2691790 NP_946133.1 CDS RPA0780 NC_005296.1 864804 866069 R acyl-CoA dehydrogenase complement(864804..866069) Rhodopseudomonas palustris CGA009 2691802 NP_946134.1 CDS RPA0781 NC_005296.1 866150 866500 R cytochrome c552 complement(866150..866500) Rhodopseudomonas palustris CGA009 2691688 NP_946135.1 CDS RPA0782 NC_005296.1 866503 866937 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(866503..866937) Rhodopseudomonas palustris CGA009 2691400 NP_946136.1 CDS RPA0783 NC_005296.1 867126 868943 R diguanylate cyclase/phosphodiesterase complement(867126..868943) Rhodopseudomonas palustris CGA009 2691794 NP_946137.1 CDS RPA0784 NC_005296.1 869122 869964 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; short-chain dehydrogenase/reductase SDR 869122..869964 Rhodopseudomonas palustris CGA009 2691737 NP_946138.1 CDS RPA0785 NC_005296.1 870091 871470 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cytochrome P450 complement(870091..871470) Rhodopseudomonas palustris CGA009 2691769 NP_946139.1 CDS RPA0786 NC_005296.1 871591 872985 R adenylate/guanylate cyclase complement(871591..872985) Rhodopseudomonas palustris CGA009 2691761 NP_946140.1 CDS RPA0787 NC_005296.1 873042 874016 D metalloprotease; heat shock protein HtpX 873042..874016 Rhodopseudomonas palustris CGA009 2691759 NP_946141.1 CDS RPA0788 NC_005296.1 874269 875684 D major facilitator superfamily drug efflux transporter 874269..875684 Rhodopseudomonas palustris CGA009 2691766 NP_946142.1 CDS RPA0789 NC_005296.1 875681 876868 R serine-glyoxylate aminotransferase complement(875681..876868) Rhodopseudomonas palustris CGA009 2691720 NP_946143.1 CDS RPA0790 NC_005296.1 876924 877778 R hypothetical protein complement(876924..877778) Rhodopseudomonas palustris CGA009 2691715 NP_946144.1 CDS exoI1 NC_005296.1 877812 878633 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; nuclease complement(877812..878633) Rhodopseudomonas palustris CGA009 2691693 NP_946145.1 CDS RPA0792 NC_005296.1 878657 880396 R hypothetical protein complement(878657..880396) Rhodopseudomonas palustris CGA009 2691742 NP_946146.1 CDS RPA0793 NC_005296.1 880850 881716 D peptidase C14 caspase catalytic subunit p20 880850..881716 Rhodopseudomonas palustris CGA009 2691244 NP_946147.1 CDS acaP NC_005296.1 881807 882565 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; carbonate dehydratase complement(881807..882565) Rhodopseudomonas palustris CGA009 2691746 NP_946148.1 CDS RPA0795 NC_005296.1 882652 883284 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; S24 family peptidase complement(882652..883284) Rhodopseudomonas palustris CGA009 2691732 NP_946149.1 CDS RPA0796 NC_005296.1 883368 883958 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 883368..883958 Rhodopseudomonas palustris CGA009 2691729 NP_946150.1 CDS uraI NC_005296.1 883955 885049 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 883955..885049 Rhodopseudomonas palustris CGA009 2691261 NP_946151.1 CDS RPA0798 NC_005296.1 885190 885924 R beta-lactamase-like protein complement(885190..885924) Rhodopseudomonas palustris CGA009 2691050 NP_946152.1 CDS RPA0799 NC_005296.1 886068 886733 R carbonic anhydrase complement(886068..886733) Rhodopseudomonas palustris CGA009 2691705 NP_946153.1 CDS matE1 NC_005296.1 886913 888235 R MATE efflux family protein complement(886913..888235) Rhodopseudomonas palustris CGA009 2691237 NP_946154.1 CDS RPA0801 NC_005296.1 888254 888589 R hypothetical protein complement(888254..888589) Rhodopseudomonas palustris CGA009 2691008 NP_946155.1 CDS RPA0802 NC_005296.1 888628 890493 R catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase complement(888628..890493) Rhodopseudomonas palustris CGA009 2691257 NP_946156.1 CDS RPA0803 NC_005296.1 890490 891536 R mRNA 3-end processing factor complement(890490..891536) Rhodopseudomonas palustris CGA009 2691212 NP_946157.1 CDS RPA0804 NC_005296.1 891595 892530 D hypothetical protein 891595..892530 Rhodopseudomonas palustris CGA009 2691246 NP_946158.1 CDS RPA0805 NC_005296.1 892683 894032 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; outer membrane protein complement(892683..894032) Rhodopseudomonas palustris CGA009 2691328 NP_946159.1 CDS RPA0806 NC_005296.1 894376 895596 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; high-affinity branched-chain amino acid transport system substrate-binding protein 894376..895596 Rhodopseudomonas palustris CGA009 2691186 NP_946160.1 CDS RPA0807 NC_005296.1 895772 898489 D ATP dependent DNA helicase 895772..898489 Rhodopseudomonas palustris CGA009 2690662 NP_946161.1 CDS RPA0808 NC_005296.1 898734 899276 D hypothetical protein 898734..899276 Rhodopseudomonas palustris CGA009 2691082 NP_946162.1 CDS RPA0809 NC_005296.1 899416 900279 R LysR family transcriptional regulator complement(899416..900279) Rhodopseudomonas palustris CGA009 2691194 NP_946163.1 CDS RPA0810 NC_005296.1 900378 901298 D DMT family permease 900378..901298 Rhodopseudomonas palustris CGA009 2691226 NP_946164.1 CDS RPA0811 NC_005296.1 901384 902730 D manganese transp 901384..902730 Rhodopseudomonas palustris CGA009 2691110 NP_946165.1 CDS RPA0812 NC_005296.1 902897 903697 R hypothetical protein complement(902897..903697) Rhodopseudomonas palustris CGA009 2691228 NP_946166.1 CDS RPA0813 NC_005296.1 903694 904656 R hypothetical protein complement(903694..904656) Rhodopseudomonas palustris CGA009 2691216 NP_946167.1 CDS RPA0814 NC_005296.1 904892 908287 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(904892..908287) Rhodopseudomonas palustris CGA009 2691175 NP_946168.1 CDS RPA0815 NC_005296.1 909116 909763 D hypothetical protein 909116..909763 Rhodopseudomonas palustris CGA009 2691103 NP_946169.1 CDS RPA0816 NC_005296.1 909857 911647 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl-CoA dehydrogenase 909857..911647 Rhodopseudomonas palustris CGA009 2691157 NP_946170.1 CDS RPA0817 NC_005296.1 911818 913026 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 911818..913026 Rhodopseudomonas palustris CGA009 2691089 NP_946171.1 CDS RPA0818 NC_005296.1 913151 915367 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 3-hydroxyacyl-CoA dehydrogenase 913151..915367 Rhodopseudomonas palustris CGA009 2691160 NP_946172.1 CDS RPA0819 NC_005296.1 915791 917596 D hypothetical protein 915791..917596 Rhodopseudomonas palustris CGA009 2691197 NP_946173.1 CDS gst2 NC_005296.1 917708 918319 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glutathionine S-transferase complement(917708..918319) Rhodopseudomonas palustris CGA009 2691096 NP_946174.1 CDS RPA0821 NC_005296.1 918366 918932 D MarR family transcriptional regulator 918366..918932 Rhodopseudomonas palustris CGA009 2691128 NP_946175.1 CDS gshA NC_005296.1 918960 920396 D glutamate--cysteine ligase 918960..920396 Rhodopseudomonas palustris CGA009 2691350 NP_946176.1 CDS RPA0823 NC_005296.1 920542 921093 D hypothetical protein 920542..921093 Rhodopseudomonas palustris CGA009 2691168 NP_946177.1 CDS lepB1 NC_005296.1 921127 921897 R signal peptidase I complement(921127..921897) Rhodopseudomonas palustris CGA009 2691091 NP_946178.1 CDS RPA0825 NC_005296.1 921894 923321 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; peptidase U62 complement(921894..923321) Rhodopseudomonas palustris CGA009 2691085 NP_946179.1 CDS RPA0826 NC_005296.1 923443 923664 D hypothetical protein 923443..923664 Rhodopseudomonas palustris CGA009 2690977 NP_946180.1 CDS RPA0827 NC_005296.1 923664 923993 D hypothetical protein 923664..923993 Rhodopseudomonas palustris CGA009 2691148 NP_946181.1 CDS RPA0828 NC_005296.1 924075 924545 D MarR family transcriptional regulator 924075..924545 Rhodopseudomonas palustris CGA009 2690765 NP_946182.1 CDS ohr NC_005296.1 924660 925085 D organic hydroperoxide resistance protein 924660..925085 Rhodopseudomonas palustris CGA009 2691142 NP_946183.1 CDS RPA0830 NC_005296.1 925367 926035 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(925367..926035) Rhodopseudomonas palustris CGA009 2691013 NP_946184.1 CDS coxB NC_005296.1 926324 927181 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cytochrome-c oxidase 926324..927181 Rhodopseudomonas palustris CGA009 2691059 NP_946185.1 CDS coxA NC_005296.1 927249 928874 D cytochrome-c oxidase 927249..928874 Rhodopseudomonas palustris CGA009 2691067 NP_946186.1 CDS coxE NC_005296.1 928920 929885 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 928920..929885 Rhodopseudomonas palustris CGA009 2690887 NP_946187.1 CDS CoxF NC_005296.1 929885 930064 D CoxF protein 929885..930064 Rhodopseudomonas palustris CGA009 2691104 NP_946188.1 CDS coxG NC_005296.1 930061 930705 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 930061..930705 Rhodopseudomonas palustris CGA009 2691032 NP_946189.1 CDS coxC NC_005296.1 930777 931631 D cytochrome c oxidase subunit III 930777..931631 Rhodopseudomonas palustris CGA009 2691019 NP_946190.1 CDS RPA0837 NC_005296.1 931794 932189 D hypothetical protein 931794..932189 Rhodopseudomonas palustris CGA009 2690994 NP_946191.1 CDS RPA0838 NC_005296.1 932186 932989 D surfeit 1 932186..932989 Rhodopseudomonas palustris CGA009 2690807 NP_946192.2 CDS thrC NC_005296.1 933124 934554 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 933124..934554 Rhodopseudomonas palustris CGA009 2690972 NP_946193.1 CDS mpp NC_005296.1 934551 935840 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; protease 934551..935840 Rhodopseudomonas palustris CGA009 2691043 NP_946194.1 CDS RPA0841 NC_005296.1 935893 936489 D N-acetyltransferase GCN5 935893..936489 Rhodopseudomonas palustris CGA009 2691046 NP_946195.1 CDS RPA0842 NC_005296.1 936587 937240 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 936587..937240 Rhodopseudomonas palustris CGA009 2690975 NP_946196.1 CDS atpF1 NC_005296.1 937373 937864 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; H+-transporting two-sector ATPase subunit B/B' complement(937373..937864) Rhodopseudomonas palustris CGA009 2690885 NP_946197.1 CDS atpF2 NC_005296.1 937870 938427 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; H+-transporting two-sector ATPase subunit B/B' complement(937870..938427) Rhodopseudomonas palustris CGA009 2690935 NP_946198.1 CDS atpE NC_005296.1 938485 938712 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C complement(938485..938712) Rhodopseudomonas palustris CGA009 2691006 NP_946199.1 CDS atpB NC_005296.1 938761 939507 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A complement(938761..939507) Rhodopseudomonas palustris CGA009 2691011 NP_946200.1 CDS atpI NC_005296.1 939577 939963 R FoF1 ATP synthase subunit I complement(939577..939963) Rhodopseudomonas palustris CGA009 2690936 NP_946201.1 CDS RPA0848 NC_005296.1 940266 940889 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; DSBA oxidoreductase 940266..940889 Rhodopseudomonas palustris CGA009 2690929 NP_946202.1 CDS RPA0849 NC_005296.1 940935 941519 D hypothetical protein 940935..941519 Rhodopseudomonas palustris CGA009 2690961 NP_946203.1 CDS RPA0850 NC_005296.1 941543 942016 D hypothetical protein 941543..942016 Rhodopseudomonas palustris CGA009 2690877 NP_946204.1 CDS RPA0851 NC_005296.1 942213 943877 R general substrate transporter complement(942213..943877) Rhodopseudomonas palustris CGA009 2690968 NP_946205.1 CDS RPA0852 NC_005296.1 944214 944891 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; LuxR family transcriptional regulator 944214..944891 Rhodopseudomonas palustris CGA009 2690839 NP_946206.1 CDS RPA0853 NC_005296.1 945053 948562 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; periplasmic sensor hybrid histidine kinase complement(945053..948562) Rhodopseudomonas palustris CGA009 2690898 NP_946207.1 CDS hemO NC_005296.1 948749 949978 R catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase complement(948749..949978) Rhodopseudomonas palustris CGA009 2690927 NP_946208.1 CDS RPA0855 NC_005296.1 950199 951263 R beta-lactamase-like protein complement(950199..951263) Rhodopseudomonas palustris CGA009 2690911 NP_946209.1 CDS RPA0856 NC_005296.1 951429 953567 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methyl-accepting chemotaxis receptor/sensory transducer complement(951429..953567) Rhodopseudomonas palustris CGA009 2689367 NP_946210.1 CDS RPA0857 NC_005296.1 953782 954516 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; outer membrane protein complement(953782..954516) Rhodopseudomonas palustris CGA009 2690829 NP_946211.1 CDS RPA0858 NC_005296.1 955056 955805 D ABC transporter ATP-binding protein 955056..955805 Rhodopseudomonas palustris CGA009 2690924 NP_946212.1 CDS RPA0859 NC_005296.1 955810 956682 D hypothetical protein 955810..956682 Rhodopseudomonas palustris CGA009 2690562 NP_946213.1 CDS RPA0860 NC_005296.1 956688 957605 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter periplasmic binding protein 956688..957605 Rhodopseudomonas palustris CGA009 2691598 NP_946214.1 CDS RPA0861 NC_005296.1 957713 958801 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cobalamin synthesis protein P47K 957713..958801 Rhodopseudomonas palustris CGA009 2690901 NP_946215.1 CDS RPA0862 NC_005296.1 958798 959817 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 958798..959817 Rhodopseudomonas palustris CGA009 2690910 NP_946216.1 CDS RPA0863 NC_005296.1 959852 960574 D Mg2+ transporter 959852..960574 Rhodopseudomonas palustris CGA009 2690859 NP_946217.1 CDS RPA0864 NC_005296.1 960635 961033 D hypothetical protein 960635..961033 Rhodopseudomonas palustris CGA009 2691303 NP_946218.1 CDS RPA0865 NC_005296.1 961340 962770 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; homospermidine synthase complement(961340..962770) Rhodopseudomonas palustris CGA009 2690764 NP_946219.1 CDS rnk NC_005296.1 962880 963284 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; nucleoside diphosphate kinase regulator complement(962880..963284) Rhodopseudomonas palustris CGA009 2688872 NP_946220.1 CDS RPA0867 NC_005296.1 963579 963965 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; endoribonuclease L-PSP complement(963579..963965) Rhodopseudomonas palustris CGA009 2690833 NP_946221.1 CDS RPA0868 NC_005296.1 964063 964221 R hypothetical protein complement(964063..964221) Rhodopseudomonas palustris CGA009 2688859 NP_946222.1 CDS RPA0869 NC_005296.1 964232 964819 R GCN5-like N-acetyltransferase complement(964232..964819) Rhodopseudomonas palustris CGA009 2690866 NP_946223.1 CDS RPA0870 NC_005296.1 964962 966104 R ornithine decarboxylase complement(964962..966104) Rhodopseudomonas palustris CGA009 2690650 NP_946224.1 CDS RPA0871 NC_005296.1 966769 967029 R hypothetical protein complement(966769..967029) Rhodopseudomonas palustris CGA009 2690772 NP_946225.1 CDS RPA0872 NC_005296.1 967238 969328 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; peptidyl-dipeptidase Dcp 967238..969328 Rhodopseudomonas palustris CGA009 2689930 NP_946226.1 CDS RPA0873 NC_005296.1 969333 969986 D 68% identity to Bradyrhizobium japonicum bll7755; hypothetical protein 969333..969986 Rhodopseudomonas palustris CGA009 2689727 NP_946227.1 CDS RPA0874 NC_005296.1 969983 971296 D high-affinity nickel-transporter 969983..971296 Rhodopseudomonas palustris CGA009 2690717 NP_946228.1 CDS hemH NC_005296.1 971472 972509 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 971472..972509 Rhodopseudomonas palustris CGA009 2690759 NP_946229.1 CDS RPA0876 NC_005296.1 972666 973661 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 972666..973661 Rhodopseudomonas palustris CGA009 2690818 NP_946230.1 CDS RPA0877 NC_005296.1 973678 974127 D hypothetical protein 973678..974127 Rhodopseudomonas palustris CGA009 2690812 NP_946231.1 CDS RPA0878 NC_005296.1 974231 975136 R AraC family transcriptional regulator complement(974231..975136) Rhodopseudomonas palustris CGA009 2690710 NP_946232.1 CDS kpsF NC_005296.1 975442 976455 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; sugar isomerase complement(975442..976455) Rhodopseudomonas palustris CGA009 2690792 NP_946233.1 CDS RPA0880 NC_005296.1 976660 978375 D hypothetical protein 976660..978375 Rhodopseudomonas palustris CGA009 2690735 NP_946234.1 CDS RPA0881 NC_005296.1 978487 979503 D hypothetical protein 978487..979503 Rhodopseudomonas palustris CGA009 2690794 NP_946235.1 CDS RPA0882 NC_005296.1 979493 980344 R ABC transporter permease complement(979493..980344) Rhodopseudomonas palustris CGA009 2690804 NP_946236.1 CDS RPA0883 NC_005296.1 980454 981248 R ABC transporter ATP-binding protein complement(980454..981248) Rhodopseudomonas palustris CGA009 2689760 NP_946237.1 CDS RPA0884 NC_005296.1 981450 982448 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter substrate-binding protein complement(981450..982448) Rhodopseudomonas palustris CGA009 2690776 NP_946238.1 CDS RPA0885 NC_005296.1 982576 982848 R hypothetical protein complement(982576..982848) Rhodopseudomonas palustris CGA009 2690584 NP_946239.1 CDS RPA0886 NC_005296.1 983016 984524 D diguanylate cyclase 983016..984524 Rhodopseudomonas palustris CGA009 2690724 NP_946240.1 CDS exoN NC_005296.1 984555 985430 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; UTP-glucose-1-phosphate uridylyltransferase complement(984555..985430) Rhodopseudomonas palustris CGA009 2690736 NP_946241.1 CDS RPA0888 NC_005296.1 985554 986600 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; alpha/beta hydrolase complement(985554..986600) Rhodopseudomonas palustris CGA009 2690766 NP_946242.1 CDS hspD NC_005296.1 986719 987195 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; heat shock protein Hsp20 986719..987195 Rhodopseudomonas palustris CGA009 2690700 NP_946243.1 CDS RPA0890 NC_005296.1 987337 988113 R hypothetical protein complement(987337..988113) Rhodopseudomonas palustris CGA009 2690537 NP_946244.1 CDS gltB NC_005296.1 988573 993300 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glutamate synthase ferredoxin subunit 988573..993300 Rhodopseudomonas palustris CGA009 2690673 NP_946245.1 CDS gltD NC_005296.1 993473 994927 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 993473..994927 Rhodopseudomonas palustris CGA009 2690692 NP_946246.1 CDS RPA0893 NC_005296.1 995274 995675 D hypothetical protein 995274..995675 Rhodopseudomonas palustris CGA009 2690544 NP_946247.1 CDS RPA0894 NC_005296.1 995769 996728 R transposase complement(995769..996728) Rhodopseudomonas palustris CGA009 2690548 NP_946248.1 CDS RPA0895 NC_005296.1 997027 997803 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 3-oxoacyl-[ACP] reductase complement(997027..997803) Rhodopseudomonas palustris CGA009 2690725 NP_946249.1 CDS RPA0896 NC_005296.1 997944 998678 D 3-oxoacyl-ACP reductase 997944..998678 Rhodopseudomonas palustris CGA009 2690677 NP_946250.1 CDS RPA0897 NC_005296.1 998750 1000444 R hypothetical protein complement(998750..1000444) Rhodopseudomonas palustris CGA009 2688897 NP_946251.1 CDS dapA NC_005296.1 1000591 1001508 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(1000591..1001508) Rhodopseudomonas palustris CGA009 2690651 NP_946252.1 CDS RPA0899 NC_005296.1 1002043 1003440 R lytic murein transglycosylase complement(1002043..1003440) Rhodopseudomonas palustris CGA009 2690447 NP_946253.1 CDS RPA0900 NC_005296.1 1003627 1004259 D Rht family amino acid efflux protein 1003627..1004259 Rhodopseudomonas palustris CGA009 2690656 NP_946254.1 CDS RPA0901 NC_005296.1 1004276 1005043 R hypothetical protein complement(1004276..1005043) Rhodopseudomonas palustris CGA009 2690657 NP_946255.1 CDS RPA0902 NC_005296.1 1005076 1005507 R glyoxalase/bleomycin resistance protein/dioxygenase complement(1005076..1005507) Rhodopseudomonas palustris CGA009 2690674 NP_946256.1 CDS RPA0903 NC_005296.1 1005555 1006154 D TetR family transcriptional regulator 1005555..1006154 Rhodopseudomonas palustris CGA009 2690602 NP_946257.1 CDS RPA0904 NC_005296.1 1006170 1007090 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; histidinol-phosphate phosphatase complement(1006170..1007090) Rhodopseudomonas palustris CGA009 2690558 NP_946258.1 CDS RPA0905 NC_005296.1 1007654 1007827 R Flp/Fap pilin protein complement(1007654..1007827) Rhodopseudomonas palustris CGA009 2689039 NP_946259.1 CDS RPA0906 NC_005296.1 1007978 1008865 R N-formylglutamate amidohydrolase complement(1007978..1008865) Rhodopseudomonas palustris CGA009 2690616 NP_946260.1 CDS RPA0907 NC_005296.1 1009176 1009535 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; chemotaxis protein CheY 1009176..1009535 Rhodopseudomonas palustris CGA009 2688917 NP_946261.1 CDS RPA0908 NC_005296.1 1009925 1010050 D hypothetical protein 1009925..1010050 Rhodopseudomonas palustris CGA009 2690613 NP_946262.1 CDS wrbA NC_005296.1 1010498 1011097 R stationary phase protein that binds TrpR repressor; TrpR binding protein WrbA complement(1010498..1011097) Rhodopseudomonas palustris CGA009 2690618 NP_946263.1 CDS RPA0910 NC_005296.1 1011260 1011958 R hypothetical protein complement(1011260..1011958) Rhodopseudomonas palustris CGA009 2690407 NP_946264.1 CDS RPA0911 NC_005296.1 1012091 1013014 D LysR family transcriptional regulator 1012091..1013014 Rhodopseudomonas palustris CGA009 2690559 NP_946265.1 CDS RPA0912 NC_005296.1 1013029 1013862 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1013029..1013862) Rhodopseudomonas palustris CGA009 2690510 NP_946266.1 CDS RPA0913 NC_005296.1 1013997 1014650 D hypothetical protein 1013997..1014650 Rhodopseudomonas palustris CGA009 2690581 NP_946267.1 CDS RPA0914 NC_005296.1 1014871 1017750 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; diguanylate cyclase/phosphodiesterase complement(1014871..1017750) Rhodopseudomonas palustris CGA009 2690576 NP_946268.1 CDS RPA0915 NC_005296.1 1017873 1018871 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; NADPH quinone oxidoreductase complement(1017873..1018871) Rhodopseudomonas palustris CGA009 2690610 NP_946269.1 CDS RPA0916 NC_005296.1 1018985 1019176 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1018985..1019176 Rhodopseudomonas palustris CGA009 2690324 NP_946270.1 CDS RPA0917 NC_005296.1 1019597 1020106 D AraC family transcriptional regulator 1019597..1020106 Rhodopseudomonas palustris CGA009 2690519 NP_946271.1 CDS rpmE NC_005296.1 1020328 1020555 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(1020328..1020555) Rhodopseudomonas palustris CGA009 2690374 NP_946272.1 CDS RPA0919 NC_005296.1 1020753 1022657 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter permease/ATP-binding protein 1020753..1022657 Rhodopseudomonas palustris CGA009 2690511 NP_946273.1 CDS RPA0920 NC_005296.1 1022801 1023247 R N-acetyltransferase GCN5 complement(1022801..1023247) Rhodopseudomonas palustris CGA009 2690557 NP_946274.1 CDS RPA0921 NC_005296.1 1023394 1024419 R hypothetical protein complement(1023394..1024419) Rhodopseudomonas palustris CGA009 2690486 NP_946275.1 CDS RPA0922 NC_005296.1 1024419 1025438 R hypothetical protein complement(1024419..1025438) Rhodopseudomonas palustris CGA009 2690463 NP_946276.1 CDS RPA0923 NC_005296.1 1025618 1026445 D hypothetical protein 1025618..1026445 Rhodopseudomonas palustris CGA009 2690505 NP_946277.1 CDS RPA0924 NC_005296.1 1026442 1027467 D cyclopropane-fatty-acyl-phospholipid synthase 1026442..1027467 Rhodopseudomonas palustris CGA009 2690522 NP_946278.1 CDS RPA0925 NC_005296.1 1027750 1027944 D hypothetical protein 1027750..1027944 Rhodopseudomonas palustris CGA009 2690376 NP_946279.1 CDS RPA0926 NC_005296.1 1028028 1028222 D hypothetical protein 1028028..1028222 Rhodopseudomonas palustris CGA009 2690487 NP_946280.1 CDS RPA0927 NC_005296.1 1028320 1028529 R XRE family transcriptional regulator complement(1028320..1028529) Rhodopseudomonas palustris CGA009 2690464 NP_946281.1 CDS RPA0928 NC_005296.1 1028533 1029108 R hypothetical protein complement(1028533..1029108) Rhodopseudomonas palustris CGA009 2690201 NP_946282.1 CDS RPA0929 NC_005296.1 1029178 1029765 D hypothetical protein 1029178..1029765 Rhodopseudomonas palustris CGA009 2690331 NP_946283.1 CDS RPA0930 NC_005296.1 1029992 1030594 R 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(1029992..1030594) Rhodopseudomonas palustris CGA009 2690304 NP_946284.1 CDS ubiD NC_005296.1 1030591 1032129 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; carboxylyase-like protein complement(1030591..1032129) Rhodopseudomonas palustris CGA009 2690299 NP_946285.1 CDS RPA0932 NC_005296.1 1032245 1032790 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1032245..1032790 Rhodopseudomonas palustris CGA009 2690375 NP_946286.1 CDS RPA0933 NC_005296.1 1032794 1033771 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; peptidase U32 1032794..1033771 Rhodopseudomonas palustris CGA009 2690131 NP_946287.1 CDS RPA0934 NC_005296.1 1033840 1034760 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; peptidase U32 1033840..1034760 Rhodopseudomonas palustris CGA009 2690461 NP_946288.1 CDS RPA0935 NC_005296.1 1035248 1036549 R hypothetical protein complement(1035248..1036549) Rhodopseudomonas palustris CGA009 2690451 NP_946289.1 CDS RPA0936 NC_005296.1 1036631 1037203 D TetR family transcriptional regulator 1036631..1037203 Rhodopseudomonas palustris CGA009 2690333 NP_946290.1 CDS RPA0937 NC_005296.1 1037232 1038020 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; extragenic suppressor protein SuhB complement(1037232..1038020) Rhodopseudomonas palustris CGA009 2690449 NP_946291.1 CDS RPA0938 NC_005296.1 1038125 1039216 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1038125..1039216) Rhodopseudomonas palustris CGA009 2690262 NP_946292.1 CDS RPA0939 NC_005296.1 1039233 1039892 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; thiamine monophosphate synthase complement(1039233..1039892) Rhodopseudomonas palustris CGA009 2690427 NP_946293.1 CDS RPA0940 NC_005296.1 1039898 1040932 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; fructose-bisphosphate aldolase complement(1039898..1040932) Rhodopseudomonas palustris CGA009 2690378 NP_946294.1 CDS RPA0941 NC_005296.1 1040987 1041310 R hypothetical protein complement(1040987..1041310) Rhodopseudomonas palustris CGA009 2690352 NP_946295.1 CDS RPA0942 NC_005296.1 1041307 1041591 R hypothetical protein complement(1041307..1041591) Rhodopseudomonas palustris CGA009 2691530 NP_946296.1 CDS pgk NC_005296.1 1041690 1042886 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(1041690..1042886) Rhodopseudomonas palustris CGA009 2690381 NP_946297.1 CDS cbbG NC_005296.1 1043108 1044115 R catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase complement(1043108..1044115) Rhodopseudomonas palustris CGA009 2690269 NP_946298.1 CDS cbbT2 NC_005296.1 1044331 1046316 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(1044331..1046316) Rhodopseudomonas palustris CGA009 2689159 NP_946299.1 CDS RPA0946 NC_005296.1 1046611 1046988 D hypothetical protein 1046611..1046988 Rhodopseudomonas palustris CGA009 2690373 NP_946300.1 CDS RPA0947 NC_005296.1 1046985 1047395 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1046985..1047395 Rhodopseudomonas palustris CGA009 2690279 NP_946301.1 CDS RPA0948 NC_005296.1 1047902 1049140 R RNA methyltransferase complement(1047902..1049140) Rhodopseudomonas palustris CGA009 2689140 NP_946302.1 CDS matE2 NC_005296.1 1049187 1050611 R MATE efflux family protein complement(1049187..1050611) Rhodopseudomonas palustris CGA009 2689139 NP_946303.1 CDS tly NC_005296.1 1050674 1051414 R hemolysin A complement(1050674..1051414) Rhodopseudomonas palustris CGA009 2690315 NP_946304.1 CDS RPA0951 NC_005296.1 1051417 1051980 R nucleoside 2-deoxyribosyltransferase complement(1051417..1051980) Rhodopseudomonas palustris CGA009 2688971 NP_946305.1 CDS dxs NC_005296.1 1052203 1054128 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(1052203..1054128) Rhodopseudomonas palustris CGA009 2690243 NP_946306.1 CDS xseB NC_005296.1 1054542 1054793 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(1054542..1054793) Rhodopseudomonas palustris CGA009 2690189 NP_946307.1 CDS RPA0954 NC_005296.1 1054877 1055806 R histone deacetylase superfamily protein complement(1054877..1055806) Rhodopseudomonas palustris CGA009 2690317 NP_946308.1 CDS RPA0955 NC_005296.1 1055912 1057630 R 5`-nucleotidase family protein complement(1055912..1057630) Rhodopseudomonas palustris CGA009 2690254 NP_946309.1 CDS RPA0956 NC_005296.1 1057814 1058290 D hypothetical protein 1057814..1058290 Rhodopseudomonas palustris CGA009 2690281 NP_946310.1 CDS RPA0957 NC_005296.1 1058329 1059123 R enoyl-CoA hydratase complement(1058329..1059123) Rhodopseudomonas palustris CGA009 2690151 NP_946311.1 CDS RPA0958 NC_005296.1 1059297 1061078 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl-CoA dehydrogenase complement(1059297..1061078) Rhodopseudomonas palustris CGA009 2690292 NP_946312.1 CDS hupU NC_005296.1 1061498 1062499 D uracil phosphoribosyltransferase 1061498..1062499 Rhodopseudomonas palustris CGA009 2690258 NP_946313.1 CDS hupS NC_005296.1 1064173 1065285 D hydrogenase small chain 1064173..1065285 Rhodopseudomonas palustris CGA009 2690234 NP_946314.1 CDS hupL NC_005296.1 1065304 1067097 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hydrogenase large chain 1065304..1067097 Rhodopseudomonas palustris CGA009 2690202 NP_946315.1 CDS hupC NC_005296.1 1067114 1067842 D Ni/Fe-hydrogenase 1 B-type cytochrome subunit 1067114..1067842 Rhodopseudomonas palustris CGA009 2690244 NP_946316.1 CDS hupD NC_005296.1 1067904 1068557 D hydrogenase maturation protein HupD 1067904..1068557 Rhodopseudomonas palustris CGA009 2690251 NP_946317.1 CDS hupE NC_005296.1 1068571 1069164 D membrane-bound hydrogenase component hupE 1068571..1069164 Rhodopseudomonas palustris CGA009 2690054 NP_946318.1 CDS hupF NC_005296.1 1069185 1069487 D hydrogenase expression/formation protein HupF 1069185..1069487 Rhodopseudomonas palustris CGA009 2689828 NP_946319.1 CDS hupG NC_005296.1 1069708 1070109 D hydrogenase expression/formation protein HupG 1069708..1070109 Rhodopseudomonas palustris CGA009 2690158 NP_946320.1 CDS hupH NC_005296.1 1070106 1070972 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hydrogenase expression/formation protein HupH 1070106..1070972 Rhodopseudomonas palustris CGA009 2690135 NP_946321.1 CDS hupI NC_005296.1 1070969 1071181 D rubredoxin hupI 1070969..1071181 Rhodopseudomonas palustris CGA009 2690198 NP_946322.1 CDS hupJ NC_005296.1 1071171 1071695 D hydrogenase expression/formation protein HupJ 1071171..1071695 Rhodopseudomonas palustris CGA009 2690130 NP_946323.1 CDS hupK NC_005296.1 1071692 1072801 D hydrogenase expression/formation protein HupK 1071692..1072801 Rhodopseudomonas palustris CGA009 2690129 NP_946324.1 CDS hypA NC_005296.1 1072794 1073135 D hydrogenase formation/expression protein HypA 1072794..1073135 Rhodopseudomonas palustris CGA009 2689839 NP_946325.1 CDS hypB NC_005296.1 1073135 1074091 D hydrogenase expression/formation protein HypB 1073135..1074091 Rhodopseudomonas palustris CGA009 2690124 NP_946326.1 CDS hypF NC_005296.1 1074096 1076369 D hydrogenase maturation protein HypF 1074096..1076369 Rhodopseudomonas palustris CGA009 2689719 NP_946327.1 CDS hypC NC_005296.1 1076369 1076602 D hypC 1076369..1076602 Rhodopseudomonas palustris CGA009 2689916 NP_946328.1 CDS hypD NC_005296.1 1076599 1077741 D hydrogenase expression/formation protein HypD 1076599..1077741 Rhodopseudomonas palustris CGA009 2690071 NP_946329.1 CDS hypE NC_005296.1 1077738 1078784 D hydrogenase expression/formation protein HypE 1077738..1078784 Rhodopseudomonas palustris CGA009 2689556 NP_946330.1 CDS hoxA NC_005296.1 1078825 1080273 D Fis family transcriptional regulator 1078825..1080273 Rhodopseudomonas palustris CGA009 2690120 NP_946331.1 CDS RPA0980 NC_005296.1 1080263 1081615 D sensor histidine kinase 1080263..1081615 Rhodopseudomonas palustris CGA009 2690142 NP_946332.1 CDS RPA0981 NC_005296.1 1081721 1084108 D sensor histidine kinase 1081721..1084108 Rhodopseudomonas palustris CGA009 2690138 NP_946333.1 CDS pcaR NC_005296.1 1084132 1084923 R transcriptional regulator PcaR complement(1084132..1084923) Rhodopseudomonas palustris CGA009 2689836 NP_946334.1 CDS RPA0983 NC_005296.1 1085284 1086642 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; phthalate 4,5-dioxygenase 1085284..1086642 Rhodopseudomonas palustris CGA009 2690141 NP_946335.1 CDS glnA4 NC_005296.1 1086639 1088099 D glutamine synthetase 1086639..1088099 Rhodopseudomonas palustris CGA009 2689056 NP_946336.1 CDS RPA0985 NC_005296.1 1088146 1089318 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched-chain amino acid transport system substrate-binding protein 1088146..1089318 Rhodopseudomonas palustris CGA009 2690109 NP_946337.1 CDS RPA0986 NC_005296.1 1089530 1090396 D urea/short-chain amide transport system permease 1089530..1090396 Rhodopseudomonas palustris CGA009 2688815 NP_946338.1 CDS RPA0987 NC_005296.1 1090399 1091397 D branched chain amino acid ABC transporter permease 1090399..1091397 Rhodopseudomonas palustris CGA009 2688919 NP_946339.1 CDS RPA0988 NC_005296.1 1091394 1092158 D branched-chain amino acid ABC transporter ATP-binding protein 1091394..1092158 Rhodopseudomonas palustris CGA009 2690007 NP_946340.1 CDS RPA0989 NC_005296.1 1092139 1092852 D ABC transporter ATP-binding protein 1092139..1092852 Rhodopseudomonas palustris CGA009 2690008 NP_946341.1 CDS phyB5 NC_005296.1 1092866 1095403 R bacteriophytochrome PhyB complement(1092866..1095403) Rhodopseudomonas palustris CGA009 2688807 NP_946342.1 CDS RPA0991 NC_005296.1 1095619 1096404 D Crp/Fnr family transcriptional regulator 1095619..1096404 Rhodopseudomonas palustris CGA009 2691618 NP_946343.1 CDS RPA0992 NC_005296.1 1096426 1097157 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Crp/Fnr family transcriptional regulator complement(1096426..1097157) Rhodopseudomonas palustris CGA009 2690006 NP_946344.1 CDS RPA0993 NC_005296.1 1097324 1097899 D alpha-ribazole-5'-phosphate phosphatase 1097324..1097899 Rhodopseudomonas palustris CGA009 2690053 NP_946345.1 CDS RPA0994 NC_005296.1 1098342 1098677 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1098342..1098677 Rhodopseudomonas palustris CGA009 2690035 NP_946346.1 CDS RPA0995 NC_005296.1 1098742 1099887 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl-CoA dehydrogenase complement(1098742..1099887) Rhodopseudomonas palustris CGA009 2690107 NP_946347.1 CDS RPA0996 NC_005296.1 1100262 1101284 R alpha/beta hydrolase complement(1100262..1101284) Rhodopseudomonas palustris CGA009 2690078 NP_946348.1 CDS RPA0997 NC_005296.1 1101329 1101757 D ArsR family transcriptional regulator 1101329..1101757 Rhodopseudomonas palustris CGA009 2689787 NP_946349.1 CDS RPA0998 NC_005296.1 1101771 1102151 R rhodanese-like protein complement(1101771..1102151) Rhodopseudomonas palustris CGA009 2690088 NP_946350.1 CDS PA5115 NC_005296.1 1102360 1102974 D hypothetical protein 1102360..1102974 Rhodopseudomonas palustris CGA009 2689789 NP_946351.1 CDS RPA1000 NC_005296.1 1102982 1103377 R nitrogenase-associated protein complement(1102982..1103377) Rhodopseudomonas palustris CGA009 2690080 NP_946352.1 CDS RPA1001 NC_005296.1 1103391 1103981 R hypothetical protein complement(1103391..1103981) Rhodopseudomonas palustris CGA009 2689842 NP_946353.1 CDS modD NC_005296.1 1104195 1105070 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; pyrophosphorylase ModD 1104195..1105070 Rhodopseudomonas palustris CGA009 2690031 NP_946354.1 CDS RPA1003 NC_005296.1 1105201 1106835 R acyl-CoA synthase complement(1105201..1106835) Rhodopseudomonas palustris CGA009 2690022 NP_946355.1 CDS RPA1004 NC_005296.1 1107079 1107285 D hypothetical protein 1107079..1107285 Rhodopseudomonas palustris CGA009 2689762 NP_946356.1 CDS RPA1005 NC_005296.1 1107364 1108014 D NUDIX hydrolase 1107364..1108014 Rhodopseudomonas palustris CGA009 2689364 NP_946357.1 CDS RPA1006 NC_005296.1 1108128 1108529 D extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit alpha 1108128..1108529 Rhodopseudomonas palustris CGA009 2689555 NP_946358.1 CDS mhpB NC_005296.1 1108545 1109402 D extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit beta 1108545..1109402 Rhodopseudomonas palustris CGA009 2690048 NP_946359.1 CDS RPA1008 NC_005296.1 1109469 1110359 R AraC family transcriptional regulator complement(1109469..1110359) Rhodopseudomonas palustris CGA009 2689956 NP_946360.1 CDS RPA1009 NC_005296.1 1110510 1111697 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cytochrome P450 1110510..1111697 Rhodopseudomonas palustris CGA009 2690042 NP_946361.1 CDS RPA1010 NC_005296.1 1111734 1113680 R beta-lactamase-like protein complement(1111734..1113680) Rhodopseudomonas palustris CGA009 2689895 NP_946362.1 CDS RPA1011 NC_005296.1 1113940 1114593 D DSBA oxidoreductase 1113940..1114593 Rhodopseudomonas palustris CGA009 2690025 NP_946363.1 CDS RPA1012 NC_005296.1 1114724 1115488 D integral membrane protein 1114724..1115488 Rhodopseudomonas palustris CGA009 2689996 NP_946364.1 CDS fixG NC_005296.1 1115514 1116956 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; nitrogen fixation protein FixG complement(1115514..1116956) Rhodopseudomonas palustris CGA009 2690014 NP_946365.1 CDS RPA1014 NC_005296.1 1117075 1117368 R hypothetical protein complement(1117075..1117368) Rhodopseudomonas palustris CGA009 2689763 NP_946366.1 CDS RPA1015 NC_005296.1 1117580 1118170 D PadR family transcriptional regulator 1117580..1118170 Rhodopseudomonas palustris CGA009 2689929 NP_946367.1 CDS petA NC_005296.1 1118259 1118792 D ubiquinol-cytochrome-c reductase Rieske iron-sulfur protein 1118259..1118792 Rhodopseudomonas palustris CGA009 2689843 NP_946368.1 CDS RPA1017 NC_005296.1 1119042 1119434 D nitrogen fixation-like protein 1119042..1119434 Rhodopseudomonas palustris CGA009 2692980 NP_946369.1 CDS RPA1018 NC_005296.1 1119616 1119816 R hypothetical protein complement(1119616..1119816) Rhodopseudomonas palustris CGA009 2691573 NP_946370.1 CDS RPA1019 NC_005296.1 1119897 1120238 D NolR/HlyU transcriptional regulator 1119897..1120238 Rhodopseudomonas palustris CGA009 2691519 NP_946371.1 CDS RPA1020 NC_005296.1 1120240 1121235 D secretion protein HlyD 1120240..1121235 Rhodopseudomonas palustris CGA009 2691527 NP_946372.1 CDS RPA1021 NC_005296.1 1121232 1124456 D AcrB/AcrD/AcrF family transporter 1121232..1124456 Rhodopseudomonas palustris CGA009 2691579 NP_946373.1 CDS RPA1022 NC_005296.1 1124518 1125171 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; outer membrane protein 1124518..1125171 Rhodopseudomonas palustris CGA009 2688907 NP_946374.1 CDS RPA1023 NC_005296.1 1125380 1125691 D hypothetical protein 1125380..1125691 Rhodopseudomonas palustris CGA009 2688860 NP_946375.1 CDS RPA1024 NC_005296.1 1125696 1126958 D oxidoreductase 1125696..1126958 Rhodopseudomonas palustris CGA009 2688842 NP_946376.1 CDS RPA1025 NC_005296.1 1126955 1127320 D cytochrome b5 1126955..1127320 Rhodopseudomonas palustris CGA009 2691279 NP_946377.1 CDS RPA1026 NC_005296.1 1127420 1128550 R DNA methylase N-4/N-6 complement(1127420..1128550) Rhodopseudomonas palustris CGA009 2688991 NP_946378.1 CDS RPA1027 NC_005296.1 1128929 1129846 D hypothetical protein 1128929..1129846 Rhodopseudomonas palustris CGA009 2691325 NP_946379.1 CDS moaB NC_005296.1 1129985 1130533 D molybdopterin biosynthesis protein B 1129985..1130533 Rhodopseudomonas palustris CGA009 2688946 NP_946380.1 CDS RPA1029 NC_005296.1 1130697 1131464 D CoA transferase subunit A 1130697..1131464 Rhodopseudomonas palustris CGA009 2691345 NP_946381.1 CDS RPA1030 NC_005296.1 1131461 1132213 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; CoA transferase subunit B 1131461..1132213 Rhodopseudomonas palustris CGA009 2691620 NP_946382.1 CDS RPA1031 NC_005296.1 1132371 1133378 R MarR family transcriptional regulator complement(1132371..1133378) Rhodopseudomonas palustris CGA009 2688942 NP_946383.1 CDS RPA1032 NC_005296.1 1133477 1134043 R glycosyl transferase family protein complement(1133477..1134043) Rhodopseudomonas palustris CGA009 2688926 NP_946384.1 CDS RPA1033 NC_005296.1 1134224 1135384 D radical SAM family protein 1134224..1135384 Rhodopseudomonas palustris CGA009 2688935 NP_946385.1 CDS rnhB NC_005296.1 1135479 1136393 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1135479..1136393 Rhodopseudomonas palustris CGA009 2691586 NP_946386.1 CDS RPA1035 NC_005296.1 1136390 1137973 D hypothetical protein 1136390..1137973 Rhodopseudomonas palustris CGA009 2688998 NP_946387.1 CDS polN NC_005296.1 1138032 1138862 R phage SPO1 DNA polymerase-like protein complement(1138032..1138862) Rhodopseudomonas palustris CGA009 2688789 NP_946388.1 CDS RPA1037 NC_005296.1 1139064 1140722 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; electron-transferring-flavoprotein dehydrogenase 1139064..1140722 Rhodopseudomonas palustris CGA009 2691310 NP_946389.1 CDS RPA1038 NC_005296.1 1140980 1142764 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; TPR repeat-containing protein 1140980..1142764 Rhodopseudomonas palustris CGA009 2688931 NP_946390.1 CDS ispE NC_005296.1 1142869 1143768 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1142869..1143768 Rhodopseudomonas palustris CGA009 2691398 NP_946391.1 CDS RPA1040 NC_005296.1 1143914 1144924 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; farnesyltranstransferase complement(1143914..1144924) Rhodopseudomonas palustris CGA009 2688912 NP_946392.1 CDS RPA1041 NC_005296.1 1145132 1145359 D hypothetical protein 1145132..1145359 Rhodopseudomonas palustris CGA009 2691438 NP_946393.1 CDS RPA1042 NC_005296.1 1145352 1146131 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methyltransferase small 1145352..1146131 Rhodopseudomonas palustris CGA009 2688981 NP_946394.1 CDS RPA1043 NC_005296.1 1146377 1147279 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; peptidase S49 1146377..1147279 Rhodopseudomonas palustris CGA009 2691508 NP_946395.1 CDS RPA1044 NC_005296.1 1147380 1147691 R hypothetical protein complement(1147380..1147691) Rhodopseudomonas palustris CGA009 2691291 NP_946396.1 CDS glyQ NC_005296.1 1147992 1148942 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 1147992..1148942 Rhodopseudomonas palustris CGA009 2691584 NP_946397.1 CDS RPA1046 NC_005296.1 1149072 1149506 D hypothetical protein 1149072..1149506 Rhodopseudomonas palustris CGA009 2691529 NP_946398.1 CDS glyS NC_005296.1 1149506 1151836 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 1149506..1151836 Rhodopseudomonas palustris CGA009 2691523 NP_946399.1 CDS RPA1048 NC_005296.1 1152596 1153699 D hypothetical protein 1152596..1153699 Rhodopseudomonas palustris CGA009 2688898 NP_946400.1 CDS RPA1049 NC_005296.1 1153713 1155209 R hypothetical protein complement(1153713..1155209) Rhodopseudomonas palustris CGA009 2688855 NP_946401.1 CDS RPA1050 NC_005296.1 1155473 1155628 D hypothetical protein 1155473..1155628 Rhodopseudomonas palustris CGA009 2688894 NP_946402.1 CDS RPA1051 NC_005296.1 1156005 1158746 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 1156005..1158746 Rhodopseudomonas palustris CGA009 2691542 NP_946403.1 CDS RPA1052 NC_005296.1 1159062 1160492 D cell wall hydrolase SleB 1159062..1160492 Rhodopseudomonas palustris CGA009 2691525 NP_946404.1 CDS nadC NC_005296.1 1161049 1161924 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; nicotinate-nucleotide pyrophosphorylase complement(1161049..1161924) Rhodopseudomonas palustris CGA009 2691417 NP_946405.1 CDS nadB NC_005296.1 1161941 1163557 R catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase complement(1161941..1163557) Rhodopseudomonas palustris CGA009 2689136 NP_946406.1 CDS nadA NC_005296.1 1163651 1164763 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(1163651..1164763) Rhodopseudomonas palustris CGA009 2688941 NP_946407.1 CDS RPA1056 NC_005296.1 1165116 1166102 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; zinc-binding alcohol dehydrogenase 1165116..1166102 Rhodopseudomonas palustris CGA009 2691635 NP_946408.1 CDS RPA1057 NC_005296.1 1166217 1166786 D hypothetical protein 1166217..1166786 Rhodopseudomonas palustris CGA009 2688806 NP_946409.1 CDS RPA1058 NC_005296.1 1167398 1168333 D AraC family transcriptional regulator 1167398..1168333 Rhodopseudomonas palustris CGA009 2689167 NP_946410.1 CDS RPA1059 NC_005296.1 1168419 1170635 D outer membrane protein TonB-dependent receptor 1168419..1170635 Rhodopseudomonas palustris CGA009 2688809 NP_946411.1 CDS RPA1060 NC_005296.1 1170643 1171086 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1170643..1171086 Rhodopseudomonas palustris CGA009 2688813 NP_946412.1 CDS tcmP NC_005296.1 1171079 1171933 D polyketide synthase 1171079..1171933 Rhodopseudomonas palustris CGA009 2689069 NP_946413.1 CDS RPA1062 NC_005296.1 1171930 1174602 R hypothetical protein complement(1171930..1174602) Rhodopseudomonas palustris CGA009 2689068 NP_946414.1 CDS RPA1063 NC_005296.1 1174654 1175649 R hypothetical protein complement(1174654..1175649) Rhodopseudomonas palustris CGA009 2689072 NP_946415.1 CDS RPA1064 NC_005296.1 1175646 1176152 R hypothetical protein complement(1175646..1176152) Rhodopseudomonas palustris CGA009 2689108 NP_946416.1 CDS RPA1065 NC_005296.1 1176219 1176836 R metal dependent phosphohydrolase complement(1176219..1176836) Rhodopseudomonas palustris CGA009 2689055 NP_946417.1 CDS RPA1066 NC_005296.1 1176912 1177184 D hypothetical protein 1176912..1177184 Rhodopseudomonas palustris CGA009 2689062 NP_946418.1 CDS tag NC_005296.1 1177191 1177847 R DNA-3-methyladenine glycosylase I complement(1177191..1177847) Rhodopseudomonas palustris CGA009 2689028 NP_946419.1 CDS RPA1068 NC_005296.1 1177844 1178725 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glycine cleavage T protein (aminomethyl transferase) complement(1177844..1178725) Rhodopseudomonas palustris CGA009 2689011 NP_946420.1 CDS pyrC NC_005296.1 1178873 1180207 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 1178873..1180207 Rhodopseudomonas palustris CGA009 2691367 NP_946421.1 CDS RPA1070 NC_005296.1 1180716 1180871 D hypothetical protein 1180716..1180871 Rhodopseudomonas palustris CGA009 2691369 NP_946422.1 CDS RPA1071 NC_005296.1 1180892 1181155 R hypothetical protein complement(1180892..1181155) Rhodopseudomonas palustris CGA009 2689000 NP_946423.1 CDS RPA1072 NC_005296.1 1181286 1181726 R hypothetical protein complement(1181286..1181726) Rhodopseudomonas palustris CGA009 2689040 NP_946424.1 CDS RPA1073 NC_005296.1 1181726 1182160 R NUDIX hydrolase complement(1181726..1182160) Rhodopseudomonas palustris CGA009 2691265 NP_946425.1 CDS RPA1074 NC_005296.1 1182166 1182522 R hypothetical protein complement(1182166..1182522) Rhodopseudomonas palustris CGA009 2689023 NP_946426.1 CDS RPA1075 NC_005296.1 1182725 1183498 D hypothetical protein 1182725..1183498 Rhodopseudomonas palustris CGA009 2691368 NP_946427.1 CDS RPA1076 NC_005296.1 1183607 1185034 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; FAD linked oxidase-like protein complement(1183607..1185034) Rhodopseudomonas palustris CGA009 2689076 NP_946428.1 CDS RPA1077 NC_005296.1 1185153 1186199 R SUA5/yciO/yrdC domain-containing protein complement(1185153..1186199) Rhodopseudomonas palustris CGA009 2689105 NP_946429.1 CDS RPA1078 NC_005296.1 1186379 1187281 D AraC family transcriptional regulator 1186379..1187281 Rhodopseudomonas palustris CGA009 2689065 NP_946430.1 CDS RPA1079 NC_005296.1 1187407 1188693 D 4-methylmuconolactone transporter 1187407..1188693 Rhodopseudomonas palustris CGA009 2689083 NP_946431.1 CDS RPA1080 NC_005296.1 1188686 1189588 D 2-pyrone-4,6-dicarboxylate hydrolase 1188686..1189588 Rhodopseudomonas palustris CGA009 2689085 NP_946432.1 CDS RPA1081 NC_005296.1 1189896 1190549 R hypothetical protein complement(1189896..1190549) Rhodopseudomonas palustris CGA009 2688902 NP_946433.1 CDS RPA1082 NC_005296.1 1190900 1192234 D hypothetical protein 1190900..1192234 Rhodopseudomonas palustris CGA009 2688905 NP_946434.1 CDS RPA1083 NC_005296.1 1192349 1192669 D hypothetical protein 1192349..1192669 Rhodopseudomonas palustris CGA009 2688928 NP_946435.1 CDS csgB NC_005296.1 1192666 1193157 D minor curlin subunit 1192666..1193157 Rhodopseudomonas palustris CGA009 2689125 NP_946436.1 CDS RPA1085 NC_005296.1 1193154 1193570 D hypothetical protein 1193154..1193570 Rhodopseudomonas palustris CGA009 2689155 NP_946437.1 CDS csgG NC_005296.1 1193607 1194563 D curli production assembly/transport component csgg 1193607..1194563 Rhodopseudomonas palustris CGA009 2689135 NP_946438.1 CDS RPA1087 NC_005296.1 1194566 1195360 D transglycosylase SLT domain-containing protein 1194566..1195360 Rhodopseudomonas palustris CGA009 2688913 NP_946439.1 CDS RPA1088 NC_005296.1 1195392 1195730 R hypothetical protein complement(1195392..1195730) Rhodopseudomonas palustris CGA009 2688976 NP_946440.1 CDS RPA1089 NC_005296.1 1195939 1196199 D hypothetical protein 1195939..1196199 Rhodopseudomonas palustris CGA009 2688943 NP_946441.1 CDS RPA1090 NC_005296.1 1196347 1197024 D Crp/Fnr family transcriptional regulator 1196347..1197024 Rhodopseudomonas palustris CGA009 2688954 NP_946442.1 CDS RPA1091 NC_005296.1 1197140 1197328 D hypothetical protein 1197140..1197328 Rhodopseudomonas palustris CGA009 2691304 NP_946443.1 CDS RPA1092 NC_005296.1 1197405 1197776 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; carboxymuconolactone decarboxylase 1197405..1197776 Rhodopseudomonas palustris CGA009 2691276 NP_946444.1 CDS ribB NC_005296.1 1197881 1198990 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1197881..1198990 Rhodopseudomonas palustris CGA009 2688934 NP_946445.1 CDS RPA1094 NC_005296.1 1199051 1200265 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glutaryl-CoA dehydrogenase 1199051..1200265 Rhodopseudomonas palustris CGA009 2688979 NP_946446.1 CDS RPA1095 NC_005296.1 1200414 1201391 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; beta-lactamase-like protein 1200414..1201391 Rhodopseudomonas palustris CGA009 2688900 NP_946447.1 CDS RPA1096 NC_005296.1 1201404 1203155 R methyl-accepting chemotaxis sensory transducer complement(1201404..1203155) Rhodopseudomonas palustris CGA009 2691322 NP_946448.1 CDS RPA1097 NC_005296.1 1203352 1204098 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1203352..1204098 Rhodopseudomonas palustris CGA009 2688916 NP_946449.1 CDS RPA1098 NC_005296.1 1204145 1204450 R hypothetical protein complement(1204145..1204450) Rhodopseudomonas palustris CGA009 2688879 NP_946450.1 CDS ruvC NC_005296.1 1204649 1205173 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1204649..1205173 Rhodopseudomonas palustris CGA009 2688899 NP_946451.1 CDS ruvA NC_005296.1 1205358 1205975 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1205358..1205975 Rhodopseudomonas palustris CGA009 2688945 NP_946452.1 CDS RPA1101 NC_005296.1 1205972 1206397 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; hypothetical protein 1205972..1206397 Rhodopseudomonas palustris CGA009 2691298 NP_946453.1 CDS ruvB NC_005296.1 1206575 1207624 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1206575..1207624 Rhodopseudomonas palustris CGA009 2691634 NP_946454.1 CDS RPA1103 NC_005296.1 1207632 1208096 D 4-hydroxybenzoyl-CoA thioesterase 1207632..1208096 Rhodopseudomonas palustris CGA009 2688918 NP_946455.1 CDS ndh NC_005296.1 1208196 1209506 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1208196..1209506 Rhodopseudomonas palustris CGA009 2691392 NP_946456.1 CDS RPA1105 NC_005296.1 1209652 1210866 D OpgC protein 1209652..1210866 Rhodopseudomonas palustris CGA009 2691431 NP_946457.1 CDS RPA1106 NC_005296.1 1210924 1211391 D hypothetical protein 1210924..1211391 Rhodopseudomonas palustris CGA009 2691416 NP_946458.1 CDS RPA1107 NC_005296.1 1211408 1211956 D TetR family transcriptional regulator 1211408..1211956 Rhodopseudomonas palustris CGA009 2688953 NP_946459.1 CDS RPA1108 NC_005296.1 1212076 1212480 D DGPF domain-containing protein 1212076..1212480 Rhodopseudomonas palustris CGA009 2691637 NP_946460.1 CDS RPA1109 NC_005296.1 1212477 1213745 D RNA polymerase ECF-type sigma factor 1212477..1213745 Rhodopseudomonas palustris CGA009 2691537 NP_946461.1 CDS RPA1110 NC_005296.1 1213766 1214554 R 3-oxoacyl-ACP reductase complement(1213766..1214554) Rhodopseudomonas palustris CGA009 2691532 NP_946462.1 CDS RPA1111 NC_005296.1 1215047 1215313 R hypothetical protein complement(1215047..1215313) Rhodopseudomonas palustris CGA009 2691533 NP_946463.1 CDS RPA1112 NC_005296.1 1215473 1215892 D DGPF domain-containing protein 1215473..1215892 Rhodopseudomonas palustris CGA009 2691531 NP_946464.1 CDS RPA1113 NC_005296.1 1216030 1216734 D TetR family transcriptional regulator 1216030..1216734 Rhodopseudomonas palustris CGA009 2691538 NP_946465.1 CDS RPA1114 NC_005296.1 1216877 1217344 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1216877..1217344 Rhodopseudomonas palustris CGA009 2691461 NP_946466.1 CDS RPA1115 NC_005296.1 1217494 1217961 D hypothetical protein 1217494..1217961 Rhodopseudomonas palustris CGA009 2689087 NP_946467.1 CDS RPA1116 NC_005296.1 1217945 1218850 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor SigJ 1217945..1218850 Rhodopseudomonas palustris CGA009 2691456 NP_946468.1 CDS TolQ NC_005296.1 1219157 1219867 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; MotA/TolQ/ExbB proton channel 1219157..1219867 Rhodopseudomonas palustris CGA009 2688731 NP_946469.1 CDS TolR NC_005296.1 1219902 1220372 D tolR protein 1219902..1220372 Rhodopseudomonas palustris CGA009 2689082 NP_946470.1 CDS TolA NC_005296.1 1220421 1221404 D TolA 1220421..1221404 Rhodopseudomonas palustris CGA009 2689008 NP_946471.1 CDS tolB NC_005296.1 1221477 1222811 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1221477..1222811 Rhodopseudomonas palustris CGA009 2689088 NP_946472.1 CDS RPA1121 NC_005296.1 1222982 1225312 D diguanylate cyclase/phosphodiesterase 1222982..1225312 Rhodopseudomonas palustris CGA009 2689026 NP_946473.1 CDS RPA1122 NC_005296.1 1225507 1226256 D hypothetical protein 1225507..1226256 Rhodopseudomonas palustris CGA009 2689077 NP_946474.1 CDS RPA1123 NC_005296.1 1226585 1227082 D Brucella abortus, contains similarity to peptidoglycan-associated lipoprotein precursor; observed by proteomics; OmpA/MotB 1226585..1227082 Rhodopseudomonas palustris CGA009 2689084 NP_946475.1 CDS RPA1124 NC_005296.1 1227238 1228275 D hypothetical protein 1227238..1228275 Rhodopseudomonas palustris CGA009 2691496 NP_946476.1 CDS RPA1125 NC_005296.1 1228330 1229370 D tRNA(Ile)-lysidine synthetase-like protein 1228330..1229370 Rhodopseudomonas palustris CGA009 2691499 NP_946477.1 CDS ftsH NC_005296.1 1229602 1231518 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ATP-dependent metalloprotease FtsH 1229602..1231518 Rhodopseudomonas palustris CGA009 2688947 NP_946478.1 CDS RPA1127 NC_005296.1 1231651 1232400 D AzlC-like protein 1231651..1232400 Rhodopseudomonas palustris CGA009 2691480 NP_946479.1 CDS RPA1128 NC_005296.1 1232397 1232714 D branched chain amino acid ABC transporter 1232397..1232714 Rhodopseudomonas palustris CGA009 2689118 NP_946480.1 CDS RPA1129 NC_005296.1 1232997 1233575 D TetR family transcriptional regulator 1232997..1233575 Rhodopseudomonas palustris CGA009 2691481 NP_946481.1 CDS glcD NC_005296.1 1233699 1235192 D glycolate oxidase subunit GlcD 1233699..1235192 Rhodopseudomonas palustris CGA009 2691484 NP_946482.1 CDS RPA1131 NC_005296.1 1235355 1236596 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; FAD linked oxidase-like protein 1235355..1236596 Rhodopseudomonas palustris CGA009 2688803 NP_946483.1 CDS glcF NC_005296.1 1236593 1237906 D glycolate oxidase subunit (Fe-S)protein GlcF 1236593..1237906 Rhodopseudomonas palustris CGA009 2691488 NP_946484.1 CDS RPA1133 NC_005296.1 1237981 1238919 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1237981..1238919 Rhodopseudomonas palustris CGA009 2691548 NP_946485.1 CDS RPA1134 NC_005296.1 1239338 1240309 D hypothetical protein 1239338..1240309 Rhodopseudomonas palustris CGA009 2691547 NP_946486.1 CDS RPA1135 NC_005296.1 1240568 1242328 R ABC transporter permease/ATP-binding protein complement(1240568..1242328) Rhodopseudomonas palustris CGA009 2691615 NP_946487.1 CDS ictP NC_005296.1 1242599 1244263 D L-lactate permease 1242599..1244263 Rhodopseudomonas palustris CGA009 2691614 NP_946488.1 CDS RPA1137 NC_005296.1 1244408 1244824 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1244408..1244824 Rhodopseudomonas palustris CGA009 2691613 NP_946489.1 CDS RPA1138 NC_005296.1 1244827 1246332 R FAD dependent oxidoreductase complement(1244827..1246332) Rhodopseudomonas palustris CGA009 2688867 NP_946490.1 CDS RPA1139 NC_005296.1 1246445 1247638 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1246445..1247638) Rhodopseudomonas palustris CGA009 2688748 NP_946491.1 CDS groEL NC_005296.1 1247853 1249496 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; the rhizobia have multiple copies of the groEL gene which are active under different environmental conditions; the S. meliloti protein in this cluster is not associated with a groES gene; molecular chaperone GroEL complement(1247853..1249496) Rhodopseudomonas palustris CGA009 2688736 NP_946492.1 CDS groES NC_005296.1 1249536 1249832 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(1249536..1249832) Rhodopseudomonas palustris CGA009 2691610 NP_946493.1 CDS RPA1142 NC_005296.1 1250132 1250647 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1250132..1250647 Rhodopseudomonas palustris CGA009 2691603 NP_946494.1 CDS RPA1143 NC_005296.1 1250691 1251899 D major facilitator transporter 1250691..1251899 Rhodopseudomonas palustris CGA009 2691606 NP_946495.1 CDS RPA1144 NC_005296.1 1251915 1252706 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1251915..1252706) Rhodopseudomonas palustris CGA009 2691436 NP_946496.1 CDS RPA1145 NC_005296.1 1252992 1253795 D ErfK/YbiS/YcfS/YnhG protein 1252992..1253795 Rhodopseudomonas palustris CGA009 2691597 NP_946497.1 CDS RPA1146 NC_005296.1 1253883 1254737 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; periplasmic ligand-binding sensor protein complement(1253883..1254737) Rhodopseudomonas palustris CGA009 2691600 NP_946498.1 CDS RPA1147 NC_005296.1 1254853 1255746 R hypothetical protein complement(1254853..1255746) Rhodopseudomonas palustris CGA009 2691560 NP_946499.1 CDS RPA1148 NC_005296.1 1255743 1256786 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; family 2 glycosyl transferase complement(1255743..1256786) Rhodopseudomonas palustris CGA009 2688741 NP_946500.1 CDS hisG NC_005296.1 1256880 1257857 R long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase complement(1256880..1257857) Rhodopseudomonas palustris CGA009 2688836 NP_946501.1 CDS hisZ NC_005296.1 1257854 1259002 R May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase complement(1257854..1259002) Rhodopseudomonas palustris CGA009 2688951 NP_946502.1 CDS RPA1151 NC_005296.1 1259147 1259902 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(1259147..1259902) Rhodopseudomonas palustris CGA009 2688870 NP_946503.1 CDS RPA1152 NC_005296.1 1260277 1260810 D hypothetical protein 1260277..1260810 Rhodopseudomonas palustris CGA009 2689141 NP_946504.1 CDS ubiA NC_005296.1 1260807 1261757 D UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; 4-hydroxybenzoate polyprenyltransferase 1260807..1261757 Rhodopseudomonas palustris CGA009 2688937 NP_946505.1 CDS RPA1154 NC_005296.1 1261793 1262317 R hypothetical protein complement(1261793..1262317) Rhodopseudomonas palustris CGA009 2688833 NP_946506.1 CDS RPA1155 NC_005296.1 1262616 1264013 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; peptidase U62 1262616..1264013 Rhodopseudomonas palustris CGA009 2689124 NP_946507.1 CDS RPA1156 NC_005296.1 1264072 1264815 D myo-inositol monophosphatase 2 family protein 1264072..1264815 Rhodopseudomonas palustris CGA009 2691550 NP_946508.1 CDS RPA1157 NC_005296.1 1264853 1265101 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1264853..1265101 Rhodopseudomonas palustris CGA009 2688801 NP_946509.1 CDS RPA1158 NC_005296.1 1265171 1266475 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 3-deoxy-D-manno-octulosonic-acid transferase 1265171..1266475 Rhodopseudomonas palustris CGA009 2691540 NP_946510.1 CDS lpxK NC_005296.1 1266468 1267490 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1266468..1267490 Rhodopseudomonas palustris CGA009 2691625 NP_946511.1 CDS RPA1160 NC_005296.1 1267500 1267835 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1267500..1267835) Rhodopseudomonas palustris CGA009 2689114 NP_946512.1 CDS xseA NC_005296.1 1267876 1269489 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1267876..1269489) Rhodopseudomonas palustris CGA009 2689115 NP_946513.1 CDS garS NC_005296.1 1269727 1271010 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 1269727..1271010 Rhodopseudomonas palustris CGA009 2688999 NP_946514.1 CDS RPA1163 NC_005296.1 1271174 1272082 D epoxide hydrolase 1271174..1272082 Rhodopseudomonas palustris CGA009 2688738 NP_946515.1 CDS RPA1164 NC_005296.1 1272066 1272512 R zinc-binding CMP/dCMP deaminase complement(1272066..1272512) Rhodopseudomonas palustris CGA009 2689113 NP_946516.1 CDS RPA1165 NC_005296.1 1272678 1274873 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; pseudouridine synthase 1272678..1274873 Rhodopseudomonas palustris CGA009 2689106 NP_946517.1 CDS RPA1166 NC_005296.1 1275097 1275678 D N-6 adenine-specific DNA methylase 1275097..1275678 Rhodopseudomonas palustris CGA009 2689148 NP_946518.1 CDS yfcB NC_005296.1 1275882 1276904 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(1275882..1276904) Rhodopseudomonas palustris CGA009 2691621 NP_946519.1 CDS moaE NC_005296.1 1276904 1277371 R molybdopterin biosynthesis MoaE complement(1276904..1277371) Rhodopseudomonas palustris CGA009 2691346 NP_946520.1 CDS moaD NC_005296.1 1277397 1277648 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; molybdopterin converting factor subunit 1 complement(1277397..1277648) Rhodopseudomonas palustris CGA009 2688923 NP_946521.1 CDS pgsA NC_005296.1 1277645 1278271 R CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(1277645..1278271) Rhodopseudomonas palustris CGA009 2688893 NP_946522.1 CDS uvrC NC_005296.1 1278411 1280525 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(1278411..1280525) Rhodopseudomonas palustris CGA009 2691335 NP_946523.1 CDS RPA1172 NC_005296.1 1280779 1281459 D outer membrane protein 1280779..1281459 Rhodopseudomonas palustris CGA009 2688958 NP_946524.1 CDS cspA1 NC_005296.1 1281878 1282138 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cold-shock DNA-binding domain-containing protein complement(1281878..1282138) Rhodopseudomonas palustris CGA009 2691311 NP_946525.1 CDS RPA1174 NC_005296.1 1282367 1283224 R hypothetical protein complement(1282367..1283224) Rhodopseudomonas palustris CGA009 2691633 NP_946526.1 CDS RPA1175 NC_005296.1 1283518 1283913 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; chemotaxis protein CheY 1283518..1283913 Rhodopseudomonas palustris CGA009 2691632 NP_946527.1 CDS RPA1176 NC_005296.1 1283999 1284394 R hypothetical protein complement(1283999..1284394) Rhodopseudomonas palustris CGA009 2691626 NP_946528.1 CDS RPA1177 NC_005296.1 1284607 1284810 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 4-oxalocrotonate tautomerase complement(1284607..1284810) Rhodopseudomonas palustris CGA009 2688972 NP_946529.1 CDS hisS NC_005296.1 1284950 1286521 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(1284950..1286521) Rhodopseudomonas palustris CGA009 2688977 NP_946530.1 CDS RPA1179 NC_005296.1 1286629 1288083 D catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 1286629..1288083 Rhodopseudomonas palustris CGA009 2691629 NP_946531.1 CDS RPA1180 NC_005296.1 1288180 1289745 D cylclic diguanylate phosphodiesterase 1288180..1289745 Rhodopseudomonas palustris CGA009 2691611 NP_946532.1 CDS RPA1181 NC_005296.1 1289758 1290612 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; HAD-superfamily hydrolase 1289758..1290612 Rhodopseudomonas palustris CGA009 2691353 NP_946533.1 CDS RPA1182 NC_005296.1 1290644 1292707 R hypothetical protein complement(1290644..1292707) Rhodopseudomonas palustris CGA009 2691286 NP_946534.1 CDS RPA1183 NC_005296.1 1292874 1295699 R double-transmembrane region-like protein complement(1292874..1295699) Rhodopseudomonas palustris CGA009 2689151 NP_946535.1 CDS RPA1184 NC_005296.1 1295696 1296628 R hypothetical protein complement(1295696..1296628) Rhodopseudomonas palustris CGA009 2691299 NP_946536.1 CDS RPA1185 NC_005296.1 1296628 1297731 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ATPase complement(1296628..1297731) Rhodopseudomonas palustris CGA009 2691429 NP_946537.1 CDS RPA1186 NC_005296.1 1297866 1298477 D hypothetical protein 1297866..1298477 Rhodopseudomonas palustris CGA009 2691472 NP_946538.1 CDS RPA1187 NC_005296.1 1298486 1299151 D NUDIX hydrolase 1298486..1299151 Rhodopseudomonas palustris CGA009 2691473 NP_946539.1 CDS RPA1188 NC_005296.1 1299408 1300664 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; polynucleotide adenylyltransferase 1299408..1300664 Rhodopseudomonas palustris CGA009 2691476 NP_946540.1 CDS RPA1189 NC_005296.1 1300794 1301021 R hypothetical protein complement(1300794..1301021) Rhodopseudomonas palustris CGA009 2691478 NP_946541.1 CDS RPA1190 NC_005296.1 1301099 1301731 R hypothetical protein complement(1301099..1301731) Rhodopseudomonas palustris CGA009 2691556 NP_946542.1 CDS RPA1191 NC_005296.1 1301742 1302197 R RNA methyltransferase complement(1301742..1302197) Rhodopseudomonas palustris CGA009 2691553 NP_946543.1 CDS RPA1192 NC_005296.1 1302375 1303001 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cytochrome b6-F complex iron-sulfur subunit 1302375..1303001 Rhodopseudomonas palustris CGA009 2691558 NP_946544.1 CDS RPA1193 NC_005296.1 1303042 1305108 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cytochrome c1 1303042..1305108 Rhodopseudomonas palustris CGA009 2691443 NP_946545.1 CDS RPA1194 NC_005296.1 1305267 1305941 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; carboxymethylenebutenolidase 1305267..1305941 Rhodopseudomonas palustris CGA009 2691448 NP_946546.1 CDS fixR1 NC_005296.1 1306424 1307200 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; short-chain dehydrogenase complement(1306424..1307200) Rhodopseudomonas palustris CGA009 2691447 NP_946547.1 CDS pdxH NC_005296.1 1307197 1307835 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase complement(1307197..1307835) Rhodopseudomonas palustris CGA009 2691450 NP_946548.1 CDS RPA1197 NC_005296.1 1307959 1308369 D hypothetical protein 1307959..1308369 Rhodopseudomonas palustris CGA009 2691449 NP_946549.1 CDS RPA1198 NC_005296.1 1308489 1309457 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; heat shock protein DnaJ 1308489..1309457 Rhodopseudomonas palustris CGA009 2688796 NP_946550.1 CDS RPA1199 NC_005296.1 1309856 1310677 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 1309856..1310677 Rhodopseudomonas palustris CGA009 2691385 NP_946551.1 CDS RPA1200 NC_005296.1 1310785 1311378 D phosphoglycerate mutase 1310785..1311378 Rhodopseudomonas palustris CGA009 2688948 NP_946552.1 CDS aroC NC_005296.1 1311494 1312582 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1311494..1312582 Rhodopseudomonas palustris CGA009 2691420 NP_946553.1 CDS RPA1202 NC_005296.1 1312686 1313885 D adenylate/guanylate cyclase 1312686..1313885 Rhodopseudomonas palustris CGA009 2691421 NP_946554.2 CDS clpS NC_005296.1 1314063 1314374 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor complement(1314063..1314374) Rhodopseudomonas palustris CGA009 2691364 NP_946555.1 CDS RPA1204 NC_005296.1 1314621 1315457 D hypothetical protein 1314621..1315457 Rhodopseudomonas palustris CGA009 2688932 NP_946556.1 CDS RPA1205 NC_005296.1 1315582 1316733 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; alcohol dehydrogenase complement(1315582..1316733) Rhodopseudomonas palustris CGA009 2688793 NP_946557.1 CDS RPA1206 NC_005296.1 1316922 1318442 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; aldehyde dehydrogenase complement(1316922..1318442) Rhodopseudomonas palustris CGA009 2691493 NP_946558.1 CDS RPA1207 NC_005296.1 1318680 1320569 D sigma-54-dependent transcriptional regulator 1318680..1320569 Rhodopseudomonas palustris CGA009 2689150 NP_946559.1 CDS RPA1208 NC_005296.1 1320610 1322013 R carotenoid oxygenase complement(1320610..1322013) Rhodopseudomonas palustris CGA009 2688939 NP_946560.1 CDS RPA1209 NC_005296.1 1322055 1323434 R hypothetical protein complement(1322055..1323434) Rhodopseudomonas palustris CGA009 2691419 NP_946561.1 CDS RPA1210 NC_005296.1 1323427 1324536 R hypothetical protein complement(1323427..1324536) Rhodopseudomonas palustris CGA009 2691494 NP_946562.1 CDS RPA1211 NC_005296.1 1324555 1325616 R hypothetical protein complement(1324555..1325616) Rhodopseudomonas palustris CGA009 2691490 NP_946563.1 CDS RPA1212 NC_005296.1 1325781 1326776 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; alpha/beta hydrolase complement(1325781..1326776) Rhodopseudomonas palustris CGA009 2688865 NP_946564.1 CDS RPA1213 NC_005296.1 1326998 1328503 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1326998..1328503) Rhodopseudomonas palustris CGA009 2688966 NP_946565.1 CDS RPA1214 NC_005296.1 1328639 1330291 R ABC transporter ATP-binding protein complement(1328639..1330291) Rhodopseudomonas palustris CGA009 2688989 NP_946566.1 CDS RPA1215 NC_005296.1 1330400 1331290 R ABC transporter permease complement(1330400..1331290) Rhodopseudomonas palustris CGA009 2688960 NP_946567.1 CDS RPA1216 NC_005296.1 1331304 1332245 R ABC transporter permease complement(1331304..1332245) Rhodopseudomonas palustris CGA009 2691312 NP_946568.1 CDS RPA1217 NC_005296.1 1332410 1333540 R catalyzes the release of C-terminal glutamate residues from N-acylating moieties; carboxypeptidase complement(1332410..1333540) Rhodopseudomonas palustris CGA009 2691576 NP_946569.1 CDS RPA1218 NC_005296.1 1333792 1335405 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter periplasmic protein 1333792..1335405 Rhodopseudomonas palustris CGA009 2691465 NP_946570.1 CDS RPA1219 NC_005296.1 1335945 1336595 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1335945..1336595) Rhodopseudomonas palustris CGA009 2688886 NP_946571.1 CDS RPA1220 NC_005296.1 1337065 1338081 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1337065..1338081 Rhodopseudomonas palustris CGA009 2688990 NP_946572.1 CDS RPA1221 NC_005296.1 1338132 1338923 R hypothetical protein complement(1338132..1338923) Rhodopseudomonas palustris CGA009 2691292 NP_946573.1 CDS RPA1222 NC_005296.1 1338952 1339974 R hypothetical protein complement(1338952..1339974) Rhodopseudomonas palustris CGA009 2691515 NP_946574.1 CDS RPA1223 NC_005296.1 1339991 1340314 R hypothetical protein complement(1339991..1340314) Rhodopseudomonas palustris CGA009 2691521 NP_946575.1 CDS iorA NC_005296.1 1340580 1342406 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; indolepyruvate ferredoxin oxidoreductase subunit alpha 1340580..1342406 Rhodopseudomonas palustris CGA009 2691426 NP_946576.1 CDS RPA1225 NC_005296.1 1342448 1343347 D pyruvate ferredoxin/flavodoxin oxidoreductase 4Fe-4S binding subunit 1342448..1343347 Rhodopseudomonas palustris CGA009 2689132 NP_946577.1 CDS RPA1226 NC_005296.1 1343344 1344507 D Couples the complete acetyl-CoA oxidation to aromatic ring reduction by the use of the low-potential electron shuttle ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha 1343344..1344507 Rhodopseudomonas palustris CGA009 2691349 NP_946578.1 CDS oorB NC_005296.1 1344509 1345339 D catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 1344509..1345339 Rhodopseudomonas palustris CGA009 2691408 NP_946579.1 CDS RPA1228 NC_005296.1 1345354 1345914 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; pyruvate ferredoxin/flavodoxin oxidoreductase 1345354..1345914 Rhodopseudomonas palustris CGA009 2691567 NP_946580.1 CDS RPA1229 NC_005296.1 1345938 1347272 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; phenylacetate--CoA ligase 1345938..1347272 Rhodopseudomonas palustris CGA009 2689129 NP_946581.1 CDS RPA1230 NC_005296.1 1347482 1348354 D ABC transporter permease 1347482..1348354 Rhodopseudomonas palustris CGA009 2689143 NP_946582.1 CDS RPA1231 NC_005296.1 1348357 1349502 D ABC transporter permease 1348357..1349502 Rhodopseudomonas palustris CGA009 2688856 NP_946583.1 CDS RPA1232 NC_005296.1 1349499 1350260 D branched-chain amino acid transport system ATP-binding protein 1349499..1350260 Rhodopseudomonas palustris CGA009 2688962 NP_946584.1 CDS RPA1233 NC_005296.1 1350264 1351013 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched-chain amino acid transport system ATP-binding protein 1350264..1351013 Rhodopseudomonas palustris CGA009 2688914 NP_946585.1 CDS RPA1234 NC_005296.1 1350997 1352697 D long-chain-fatty-acid--CoA ligase 1350997..1352697 Rhodopseudomonas palustris CGA009 2691315 NP_946586.1 CDS RPA1235 NC_005296.1 1352737 1353942 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; leucine-binding protein (LBP) 1352737..1353942 Rhodopseudomonas palustris CGA009 2691423 NP_946587.1 CDS RPA1236 NC_005296.1 1354133 1355329 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl-CoA dehydrogenase complement(1354133..1355329) Rhodopseudomonas palustris CGA009 2689123 NP_946588.1 CDS RPA1237 NC_005296.1 1355348 1356484 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl-CoA dehydrogenase complement(1355348..1356484) Rhodopseudomonas palustris CGA009 2689144 NP_946589.1 CDS RPA1238 NC_005296.1 1356488 1357336 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(1356488..1357336) Rhodopseudomonas palustris CGA009 2691570 NP_946590.1 CDS exbB1 NC_005296.1 1357474 1358460 D biopolymer transport protein ExbB 1357474..1358460 Rhodopseudomonas palustris CGA009 2691503 NP_946591.1 CDS exbD1 NC_005296.1 1358465 1358902 D biopolymer transport protein ExbD 1358465..1358902 Rhodopseudomonas palustris CGA009 2691516 NP_946592.1 CDS RPA1241 NC_005296.1 1358899 1359771 D tonB transport protein 1358899..1359771 Rhodopseudomonas palustris CGA009 2691596 NP_946593.1 CDS fadD1 NC_005296.1 1359791 1361302 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; AMP-dependent synthetase/ligase complement(1359791..1361302) Rhodopseudomonas palustris CGA009 2691305 NP_946594.1 CDS RPA1243 NC_005296.1 1361637 1362803 D late embryogenesis abundant protein 1361637..1362803 Rhodopseudomonas palustris CGA009 2688963 NP_946595.1 CDS RPA1244 NC_005296.1 1362819 1363424 D hypothetical protein 1362819..1363424 Rhodopseudomonas palustris CGA009 2691551 NP_946596.1 CDS RPA1245 NC_005296.1 1363411 1363803 D hypothetical protein 1363411..1363803 Rhodopseudomonas palustris CGA009 2689075 NP_946597.1 CDS RPA1246 NC_005296.1 1363800 1364501 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1363800..1364501 Rhodopseudomonas palustris CGA009 2688964 NP_946598.1 CDS rbn2 NC_005296.1 1364565 1365647 D ribonuclease BN 1364565..1365647 Rhodopseudomonas palustris CGA009 2691287 NP_946599.1 CDS RPA1248 NC_005296.1 1365644 1366570 R LuxR family transcriptional regulator complement(1365644..1366570) Rhodopseudomonas palustris CGA009 2691288 NP_946600.1 CDS RPA1249 NC_005296.1 1366560 1369928 R sensor histidine kinase complement(1366560..1369928) Rhodopseudomonas palustris CGA009 2691295 NP_946601.1 CDS RPA1250 NC_005296.1 1370185 1371447 D amide-urea binding protein 1370185..1371447 Rhodopseudomonas palustris CGA009 2691430 NP_946602.1 CDS RPA1251 NC_005296.1 1371614 1372540 D branched-chain amino acid transport system permease 1371614..1372540 Rhodopseudomonas palustris CGA009 2691330 NP_946603.1 CDS RPA1252 NC_005296.1 1372555 1373706 D high-affinity branched-chain amino acid transport system permease 1372555..1373706 Rhodopseudomonas palustris CGA009 2691428 NP_946604.1 CDS RPA1253 NC_005296.1 1373717 1374472 D branched-chain amino acid transport system ATP-binding protein 1373717..1374472 Rhodopseudomonas palustris CGA009 2691418 NP_946605.1 CDS RPA1254 NC_005296.1 1374483 1375172 D ABC transporter ATP-binding protein 1374483..1375172 Rhodopseudomonas palustris CGA009 2691351 NP_946606.1 CDS fmdA NC_005296.1 1375209 1376438 D formamide amidohydrolase 1375209..1376438 Rhodopseudomonas palustris CGA009 2691387 NP_946607.1 CDS fmdB NC_005296.1 1376627 1376971 D formamidase regulatory protein FmdB 1376627..1376971 Rhodopseudomonas palustris CGA009 2691580 NP_946608.1 CDS cobS NC_005296.1 1377086 1377883 R cobalamin (5`-phosphate) synthase complement(1377086..1377883) Rhodopseudomonas palustris CGA009 2691314 NP_946609.1 CDS RPA1258 NC_005296.1 1378063 1378485 D hypothetical protein 1378063..1378485 Rhodopseudomonas palustris CGA009 2691578 NP_946610.1 CDS RPA1259 NC_005296.1 1378745 1381489 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cation-transporting P-type ATPase 1378745..1381489 Rhodopseudomonas palustris CGA009 2691391 NP_946611.1 CDS RPA1260 NC_005296.1 1381578 1382483 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; universal stress protein 1381578..1382483 Rhodopseudomonas palustris CGA009 2691581 NP_946612.1 CDS RPA1261 NC_005296.1 1382580 1384175 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; FAD linked oxidase 1382580..1384175 Rhodopseudomonas palustris CGA009 2691389 NP_946613.1 CDS RPA1262 NC_005296.1 1384147 1384611 R hypothetical protein complement(1384147..1384611) Rhodopseudomonas palustris CGA009 2688940 NP_946614.1 CDS RPA1263 NC_005296.1 1384843 1385118 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1384843..1385118 Rhodopseudomonas palustris CGA009 2688975 NP_946615.2 CDS fliF NC_005296.1 1385318 1386934 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1385318..1386934 Rhodopseudomonas palustris CGA009 2688817 NP_946616.1 CDS fliG NC_005296.1 1386941 1388029 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1386941..1388029 Rhodopseudomonas palustris CGA009 2688823 NP_946617.1 CDS fliH NC_005296.1 1388029 1388655 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 1388029..1388655 Rhodopseudomonas palustris CGA009 2688750 NP_946618.1 CDS fliY NC_005296.1 1388673 1389020 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1388673..1389020 Rhodopseudomonas palustris CGA009 2688906 NP_946619.1 CDS flbD NC_005296.1 1389068 1390447 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Fis family transcriptional regulator 1389068..1390447 Rhodopseudomonas palustris CGA009 2688880 NP_946620.1 CDS RPA1269 NC_005296.1 1390811 1390966 R hypothetical protein complement(1390811..1390966) Rhodopseudomonas palustris CGA009 2691333 NP_946621.1 CDS RPA1270 NC_005296.1 1391021 1391299 R hypothetical protein complement(1391021..1391299) Rhodopseudomonas palustris CGA009 2688956 NP_946622.1 CDS RPA1271 NC_005296.1 1391337 1391768 R hypothetical protein complement(1391337..1391768) Rhodopseudomonas palustris CGA009 2688810 NP_946623.1 CDS RPA1272 NC_005296.1 1391835 1392662 D transglutaminase 1391835..1392662 Rhodopseudomonas palustris CGA009 2688812 NP_946624.1 CDS RPA1273 NC_005296.1 1392794 1393903 D deoxyribonuclease 1392794..1393903 Rhodopseudomonas palustris CGA009 2689166 NP_946625.1 CDS RPA1274 NC_005296.1 1394619 1395500 D Dps protein family starvation-inducible DNA-binding protein 1394619..1395500 Rhodopseudomonas palustris CGA009 2690574 NP_946626.1 CDS RPA1275 NC_005296.1 1395763 1396287 R hypothetical protein complement(1395763..1396287) Rhodopseudomonas palustris CGA009 2691730 NP_946627.1 CDS carA NC_005296.1 1396520 1397713 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(1396520..1397713) Rhodopseudomonas palustris CGA009 2692857 NP_946628.1 CDS RPA1277 NC_005296.1 1397862 1398566 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; beta-ketoadipate enol-lactone hydrolase 1397862..1398566 Rhodopseudomonas palustris CGA009 2692670 NP_946629.1 CDS RPA1278 NC_005296.1 1398724 1399179 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1398724..1399179 Rhodopseudomonas palustris CGA009 2689550 NP_946630.1 CDS RPA1279 NC_005296.1 1399267 1399575 R hypothetical protein complement(1399267..1399575) Rhodopseudomonas palustris CGA009 2689749 NP_946631.1 CDS RPA1280 NC_005296.1 1399766 1400614 D hypothetical protein 1399766..1400614 Rhodopseudomonas palustris CGA009 2692985 NP_946632.1 CDS RPA1281 NC_005296.1 1400728 1401201 R hypothetical protein complement(1400728..1401201) Rhodopseudomonas palustris CGA009 2691404 NP_946633.1 CDS RPA1282 NC_005296.1 1401194 1401508 R ArsR family transcriptional regulator complement(1401194..1401508) Rhodopseudomonas palustris CGA009 2693065 NP_946634.1 CDS RPA1283 NC_005296.1 1401637 1402254 D homoserine/homoserine lactone/threonine efflux protein 1401637..1402254 Rhodopseudomonas palustris CGA009 2693073 NP_946635.1 CDS RPA1284 NC_005296.1 1402378 1403175 R N-formylglutamate amidohydrolase complement(1402378..1403175) Rhodopseudomonas palustris CGA009 2692953 NP_946636.1 CDS RPA1285 NC_005296.1 1403337 1403744 D hypothetical protein 1403337..1403744 Rhodopseudomonas palustris CGA009 2689938 NP_946637.1 CDS RPA1286 NC_005296.1 1403761 1404003 R hypothetical protein complement(1403761..1404003) Rhodopseudomonas palustris CGA009 2692911 NP_946638.1 CDS dnaG NC_005296.1 1404459 1406468 D synthesizes RNA primers at the replication forks; DNA primase 1404459..1406468 Rhodopseudomonas palustris CGA009 2692756 NP_946639.1 CDS rpoD NC_005296.1 1406728 1408824 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 1406728..1408824 Rhodopseudomonas palustris CGA009 2691471 NP_946640.1 CDS RPA1289 NC_005296.1 1408843 1409175 D hypothetical protein 1408843..1409175 Rhodopseudomonas palustris CGA009 2691338 NP_946641.1 CDS RPA1290 NC_005296.1 1409572 1409895 R plasmid maintenance system antidote protein complement(1409572..1409895) Rhodopseudomonas palustris CGA009 2689739 NP_946642.1 CDS RPA1291 NC_005296.1 1409905 1410195 R proteic killer suppression protein complement(1409905..1410195) Rhodopseudomonas palustris CGA009 2689744 NP_946643.1 CDS RPA1292 NC_005296.1 1410470 1410664 R hypothetical protein complement(1410470..1410664) Rhodopseudomonas palustris CGA009 2693046 NP_946644.1 CDS RPA1293 NC_005296.1 1410628 1411431 R IS5 transposase complement(1410628..1411431) Rhodopseudomonas palustris CGA009 2692997 NP_946645.1 CDS RPA1294 NC_005296.1 1411896 1413359 D hypothetical protein 1411896..1413359 Rhodopseudomonas palustris CGA009 2691396 NP_946646.1 CDS RPA1295 NC_005296.1 1413532 1414743 D signal transduction histidine kinase 1413532..1414743 Rhodopseudomonas palustris CGA009 2692882 NP_946647.1 CDS RPA1296 NC_005296.1 1414958 1416721 D diguanylate cyclase 1414958..1416721 Rhodopseudomonas palustris CGA009 2692939 NP_946648.1 CDS RPA1297 NC_005296.1 1416913 1417764 R Short-chain dehydrogenase/reductase SDR:glucose/ribitol dehydrogenase complement(1416913..1417764) Rhodopseudomonas palustris CGA009 2692949 NP_946649.1 CDS RPA1298 NC_005296.1 1417955 1419070 R catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(1417955..1419070) Rhodopseudomonas palustris CGA009 2692908 NP_946650.1 CDS RPA1299 NC_005296.1 1419368 1419715 D hypothetical protein 1419368..1419715 Rhodopseudomonas palustris CGA009 2689708 NP_946651.1 CDS RPA1300 NC_005296.1 1419941 1420894 D restriction system protein 1419941..1420894 Rhodopseudomonas palustris CGA009 2689547 NP_946652.1 CDS pfpI NC_005296.1 1421072 1421635 D intracellular protease 1421072..1421635 Rhodopseudomonas palustris CGA009 2693470 NP_946653.1 CDS RPA1302 NC_005296.1 1421829 1422200 R hypothetical protein complement(1421829..1422200) Rhodopseudomonas palustris CGA009 2693546 NP_946654.1 CDS RPA1303 NC_005296.1 1422427 1423245 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; lytic murein transglycosylase 1422427..1423245 Rhodopseudomonas palustris CGA009 2693266 NP_946655.1 CDS RPA1304 NC_005296.1 1423276 1423989 R flagellar hook capping protein complement(1423276..1423989) Rhodopseudomonas palustris CGA009 2693198 NP_946656.1 CDS RPA1305 NC_005296.1 1424002 1425594 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; flagellar hook-length control protein complement(1424002..1425594) Rhodopseudomonas palustris CGA009 2693222 NP_946657.1 CDS mnmA NC_005296.1 1425895 1427100 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1425895..1427100 Rhodopseudomonas palustris CGA009 2693158 NP_946658.1 CDS RPA1307 NC_005296.1 1427120 1427758 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; phosphatidylethanolamine N-methyltransferase 1427120..1427758 Rhodopseudomonas palustris CGA009 2693399 NP_946659.1 CDS RPA1308 NC_005296.1 1428428 1428691 R hypothetical protein complement(1428428..1428691) Rhodopseudomonas palustris CGA009 2693345 NP_946660.1 CDS RPA1309 NC_005296.1 1429578 1429871 D transposase 1429578..1429871 Rhodopseudomonas palustris CGA009 2693337 NP_946661.1 CDS RPA1310 NC_005296.1 1430328 1431443 D NADH:flavin oxidoreductase 1430328..1431443 Rhodopseudomonas palustris CGA009 2693265 NP_946662.1 CDS RPA1311 NC_005296.1 1431728 1432060 D 4-carboxymuconolactone decarboxylase 1431728..1432060 Rhodopseudomonas palustris CGA009 2693184 NP_946663.1 CDS RPA1312 NC_005296.1 1432289 1432831 D hypothetical protein 1432289..1432831 Rhodopseudomonas palustris CGA009 2693217 NP_946664.1 CDS RPA1313 NC_005296.1 1433238 1435136 D sensor histidine kinase 1433238..1435136 Rhodopseudomonas palustris CGA009 2693389 NP_946665.1 CDS RPA1314 NC_005296.1 1435192 1435623 D chemotaxis protein CheY 1435192..1435623 Rhodopseudomonas palustris CGA009 2693545 NP_946666.1 CDS RPA1315 NC_005296.1 1435620 1436306 D LuxR family transcriptional regulator 1435620..1436306 Rhodopseudomonas palustris CGA009 2693585 NP_946667.1 CDS RPA1316 NC_005296.1 1436415 1436669 R hypothetical protein complement(1436415..1436669) Rhodopseudomonas palustris CGA009 2693593 NP_946668.1 CDS cioB NC_005296.1 1437556 1438581 D cytochrome bd-I oxidase subunit II 1437556..1438581 Rhodopseudomonas palustris CGA009 2693262 NP_946669.1 CDS RPA1320 NC_005296.1 1438689 1438997 D hypothetical protein 1438689..1438997 Rhodopseudomonas palustris CGA009 2693302 NP_946670.1 CDS RPA1321 NC_005296.1 1439181 1440020 D AraC family transcriptional regulator 1439181..1440020 Rhodopseudomonas palustris CGA009 2693598 NP_946671.1 CDS RPA1322 NC_005296.1 1440217 1440915 D signal transduction histidine kinase 1440217..1440915 Rhodopseudomonas palustris CGA009 2693410 NP_946672.1 CDS RPA1323 NC_005296.1 1441280 1441510 R hypothetical protein complement(1441280..1441510) Rhodopseudomonas palustris CGA009 2693591 NP_946673.1 CDS RPA1324 NC_005296.1 1441783 1443834 D FusB/FusC fusaric acid resistance pump 1441783..1443834 Rhodopseudomonas palustris CGA009 2693579 NP_946674.1 CDS RPA1324a NC_005296.1 1443848 1444054 D hypothetical protein 1443848..1444054 Rhodopseudomonas palustris CGA009 2693376 NP_946675.1 CDS RPA1325 NC_005296.1 1444051 1444992 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; FusE-MFP/HlyD family membrane fusion protein 1444051..1444992 Rhodopseudomonas palustris CGA009 2693375 NP_946676.1 CDS RPA1326 NC_005296.1 1445131 1446114 R AraC family transcriptional regulator complement(1445131..1446114) Rhodopseudomonas palustris CGA009 2693461 NP_946677.1 CDS RPA1327 NC_005296.1 1446214 1447170 D Ser/Thr protein kinase 1446214..1447170 Rhodopseudomonas palustris CGA009 2693457 NP_946678.1 CDS RPA1328 NC_005296.1 1447208 1451350 D sensor histidine kinase 1447208..1451350 Rhodopseudomonas palustris CGA009 2693544 NP_946679.1 CDS fumC NC_005296.1 1451481 1452938 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1451481..1452938 Rhodopseudomonas palustris CGA009 2693518 NP_946680.1 CDS RPA1330 NC_005296.1 1452940 1454220 D hypothetical protein 1452940..1454220 Rhodopseudomonas palustris CGA009 2693513 NP_946681.1 CDS mqoB NC_005296.1 1454615 1456108 D malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 1454615..1456108 Rhodopseudomonas palustris CGA009 2693488 NP_946682.1 CDS RPA1332 NC_005296.1 1456158 1457000 D phage integrase/recombinase 1456158..1457000 Rhodopseudomonas palustris CGA009 2693484 NP_946683.1 CDS RPA1333 NC_005296.1 1457225 1457881 D hypothetical protein 1457225..1457881 Rhodopseudomonas palustris CGA009 2693446 NP_946684.1 CDS RPA1334 NC_005296.1 1457878 1458423 D RNA polymerase ECF-type sigma factor FecI 1457878..1458423 Rhodopseudomonas palustris CGA009 2693538 NP_946685.1 CDS RPA1335 NC_005296.1 1458444 1459430 D iron siderophore sensor protein FecR 1458444..1459430 Rhodopseudomonas palustris CGA009 2693534 NP_946686.1 CDS RPA1336 NC_005296.1 1459664 1469554 D hypothetical protein 1459664..1469554 Rhodopseudomonas palustris CGA009 2693367 NP_946687.1 CDS RPA1337 NC_005296.1 1469449 1471704 D hypothetical protein 1469449..1471704 Rhodopseudomonas palustris CGA009 2693355 NP_946688.1 CDS RPA1338 NC_005296.1 1472806 1473558 D hypothetical protein 1472806..1473558 Rhodopseudomonas palustris CGA009 2693420 NP_946689.1 CDS RPA1339 NC_005296.1 1473555 1474103 D RNA polymerase ECF-type sigma factor FecI 1473555..1474103 Rhodopseudomonas palustris CGA009 2693613 NP_946690.1 CDS RPA1340 NC_005296.1 1474165 1475148 D iron siderophore sensor protein FecR 1474165..1475148 Rhodopseudomonas palustris CGA009 2693331 NP_946691.1 CDS RPA1341 NC_005296.1 1475303 1488310 D hypothetical protein 1475303..1488310 Rhodopseudomonas palustris CGA009 2693271 NP_946692.1 CDS RPA1342 NC_005296.1 1488669 1488935 R hypothetical protein complement(1488669..1488935) Rhodopseudomonas palustris CGA009 2693270 NP_946693.1 CDS RPA1343 NC_005296.1 1489054 1489806 D hypothetical protein 1489054..1489806 Rhodopseudomonas palustris CGA009 2693287 NP_946694.1 CDS RPA1344 NC_005296.1 1489856 1490317 D hypothetical protein 1489856..1490317 Rhodopseudomonas palustris CGA009 2693290 NP_946695.1 CDS RPA1345 NC_005296.1 1490469 1491218 D hypothetical protein 1490469..1491218 Rhodopseudomonas palustris CGA009 2693342 NP_946696.1 CDS RPA1346 NC_005296.1 1491235 1491948 D TonB protein colicin J receptor 1491235..1491948 Rhodopseudomonas palustris CGA009 2693341 NP_946697.1 CDS RPA1347 NC_005296.1 1492084 1492635 D RNA polymerase ECF-type sigma factor FecI 1492084..1492635 Rhodopseudomonas palustris CGA009 2693200 NP_946698.1 CDS fecR3 NC_005296.1 1492975 1493943 D iron siderophore sensor protein FecR 1492975..1493943 Rhodopseudomonas palustris CGA009 2693317 NP_946699.1 CDS RPA1349 NC_005296.1 1494203 1495957 D hemolysin activation/secretion protein 1494203..1495957 Rhodopseudomonas palustris CGA009 2693550 NP_946700.1 CDS exbB2 NC_005296.1 1495957 1497984 D transport protein ExbB2 1495957..1497984 Rhodopseudomonas palustris CGA009 2693462 NP_946701.1 CDS exbD2 NC_005296.1 1497989 1498393 D transport protein ExbD 1497989..1498393 Rhodopseudomonas palustris CGA009 2693562 NP_946702.1 CDS RPA1352 NC_005296.1 1498390 1498887 D hypothetical protein 1498390..1498887 Rhodopseudomonas palustris CGA009 2693452 NP_946703.1 CDS RPA1353 NC_005296.1 1498884 1499624 D hypothetical protein 1498884..1499624 Rhodopseudomonas palustris CGA009 2693473 NP_946704.1 CDS RPA1354 NC_005296.1 1499664 1501541 D hypothetical protein 1499664..1501541 Rhodopseudomonas palustris CGA009 2693436 NP_946705.1 CDS RPA1355 NC_005296.1 1501544 1502137 D hypothetical protein 1501544..1502137 Rhodopseudomonas palustris CGA009 2693402 NP_946706.1 CDS RPA1356 NC_005296.1 1502134 1503177 D PpiC-type peptidyl-prolyl cis-trans isomerase 1502134..1503177 Rhodopseudomonas palustris CGA009 2693286 NP_946707.1 CDS RPA1357 NC_005296.1 1503219 1503734 D hypothetical protein 1503219..1503734 Rhodopseudomonas palustris CGA009 2693590 NP_946708.1 CDS RPA1358 NC_005296.1 1503755 1504246 D hypothetical protein 1503755..1504246 Rhodopseudomonas palustris CGA009 2693344 NP_946709.1 CDS RPA1359 NC_005296.1 1504243 1505148 D transglycosylase 1504243..1505148 Rhodopseudomonas palustris CGA009 2693584 NP_946710.1 CDS RPA1360 NC_005296.1 1505154 1505711 D hypothetical protein 1505154..1505711 Rhodopseudomonas palustris CGA009 2693283 NP_946711.1 CDS RPA1361 NC_005296.1 1505812 1505994 R hypothetical protein complement(1505812..1505994) Rhodopseudomonas palustris CGA009 2693332 NP_946712.1 CDS RPA1362 NC_005296.1 1506856 1507920 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; sulfate ester transport system substrate-binding protein 1506856..1507920 Rhodopseudomonas palustris CGA009 2693275 NP_946713.1 CDS RPA1363 NC_005296.1 1507917 1509533 D sulfate ester transport system permease 1507917..1509533 Rhodopseudomonas palustris CGA009 2693253 NP_946714.1 CDS RPA1364 NC_005296.1 1509530 1510339 D sulfate ester transport system ATP-binding protein 1509530..1510339 Rhodopseudomonas palustris CGA009 2693479 NP_946715.1 CDS RPA1365 NC_005296.1 1510381 1512045 D sulfatase 1510381..1512045 Rhodopseudomonas palustris CGA009 2693469 NP_946716.1 CDS soxZ1 NC_005296.1 1512100 1512435 R sulfur oxidation protein complement(1512100..1512435) Rhodopseudomonas palustris CGA009 2693308 NP_946717.1 CDS soxY1 NC_005296.1 1512432 1512902 R with SoxZ catalyzes the oxidation of sulfur compounds; sulfur oxidation protein SoxY complement(1512432..1512902) Rhodopseudomonas palustris CGA009 2693300 NP_946718.1 CDS RPA1368 NC_005296.1 1513015 1513605 D hypothetical protein 1513015..1513605 Rhodopseudomonas palustris CGA009 2693588 NP_946719.1 CDS RPA1369 NC_005296.1 1513712 1514713 D hypothetical protein 1513712..1514713 Rhodopseudomonas palustris CGA009 2693303 NP_946720.1 CDS RPA1370 NC_005296.1 1515576 1516643 R nitrogen-fixing NifU C-terminal complement(1515576..1516643) Rhodopseudomonas palustris CGA009 2693394 NP_946721.1 CDS vnfX NC_005296.1 1516647 1517132 R vanadium nitrogenase protein complement(1516647..1517132) Rhodopseudomonas palustris CGA009 2693335 NP_946722.1 CDS vnfN NC_005296.1 1517129 1518511 R nitrogenase cofactor synthesis protein complement(1517129..1518511) Rhodopseudomonas palustris CGA009 2693523 NP_946723.1 CDS vnfE NC_005296.1 1518523 1519905 R nitrogenase cofactor synthesis protein complement(1518523..1519905) Rhodopseudomonas palustris CGA009 2693616 NP_946724.1 CDS vnfA NC_005296.1 1520222 1521856 D Fis family transcriptional regulator 1520222..1521856 Rhodopseudomonas palustris CGA009 2693315 NP_946725.1 CDS RPA1375 NC_005296.1 1521861 1522259 D hypothetical protein 1521861..1522259 Rhodopseudomonas palustris CGA009 2693549 NP_946726.1 CDS nifH NC_005296.1 1522488 1523378 R nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis; nitrogenase reductase complement(1522488..1523378) Rhodopseudomonas palustris CGA009 2693267 NP_946727.1 CDS RPA1377 NC_005296.1 1523442 1524245 R glyoxalase complement(1523442..1524245) Rhodopseudomonas palustris CGA009 2693438 NP_946728.1 CDS vnfD NC_005296.1 1524697 1526115 D nitrogenase vanadium-iron protein subunit alpha 1524697..1526115 Rhodopseudomonas palustris CGA009 2693443 NP_946729.1 CDS vnfG NC_005296.1 1526112 1526453 D vanadium dinitrogenase subunit delta 1526112..1526453 Rhodopseudomonas palustris CGA009 2693615 NP_946730.1 CDS vnfK NC_005296.1 1526517 1527905 D nitrogenase vanadium-iron protein subunit VnfK 1526517..1527905 Rhodopseudomonas palustris CGA009 2693460 NP_946731.1 CDS RPA1381 NC_005296.1 1527884 1528840 D hypothetical protein 1527884..1528840 Rhodopseudomonas palustris CGA009 2693571 NP_946732.1 CDS RPA1382 NC_005296.1 1528871 1529356 D nitrogen fixation-like protein 1528871..1529356 Rhodopseudomonas palustris CGA009 2693548 NP_946733.1 CDS RPA1383 NC_005296.1 1529451 1529894 D ModE family transcriptional regulator 1529451..1529894 Rhodopseudomonas palustris CGA009 2693397 NP_946734.1 CDS ptxC NC_005296.1 1529885 1530706 R phosphate ABC transporter permease complement(1529885..1530706) Rhodopseudomonas palustris CGA009 2693419 NP_946735.1 CDS ptxB NC_005296.1 1530703 1531593 R phosphonate transport system substrate-binding protein complement(1530703..1531593) Rhodopseudomonas palustris CGA009 2693396 NP_946736.1 CDS ptxA NC_005296.1 1531578 1532432 R phosphonate ABC transporter ATP-binding protein complement(1531578..1532432) Rhodopseudomonas palustris CGA009 2693264 NP_946737.1 CDS RPA1387 NC_005296.1 1532499 1533827 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1532499..1533827) Rhodopseudomonas palustris CGA009 2693486 NP_946738.1 CDS RPA1388 NC_005296.1 1534069 1535079 D hypothetical protein 1534069..1535079 Rhodopseudomonas palustris CGA009 2693595 NP_946739.1 CDS RPA1389 NC_005296.1 1535067 1536164 D hypothetical protein 1535067..1536164 Rhodopseudomonas palustris CGA009 2693447 NP_946740.1 CDS RPA1390 NC_005296.1 1536155 1536853 D hypothetical protein 1536155..1536853 Rhodopseudomonas palustris CGA009 2693189 NP_946741.1 CDS RPA1391 NC_005296.1 1536850 1537893 D ABC transporter ATP-binding protein 1536850..1537893 Rhodopseudomonas palustris CGA009 2693432 NP_946742.1 CDS RPA1392 NC_005296.1 1537893 1538441 D nitroreductase family proteins 1537893..1538441 Rhodopseudomonas palustris CGA009 2693176 NP_946743.1 CDS RPA1393 NC_005296.1 1538532 1539338 D hypothetical protein 1538532..1539338 Rhodopseudomonas palustris CGA009 2693620 NP_946744.1 CDS RPA1394 NC_005296.1 1539494 1540996 R transcriptional regulator complement(1539494..1540996) Rhodopseudomonas palustris CGA009 2693178 NP_946745.1 CDS RPA1395 NC_005296.1 1541222 1542790 D trehalose/maltose binding protein 1541222..1542790 Rhodopseudomonas palustris CGA009 2693575 NP_946746.1 CDS RPA1396 NC_005296.1 1542824 1543879 D sugar ABC transporter permease 1542824..1543879 Rhodopseudomonas palustris CGA009 2693586 NP_946747.1 CDS RPA1397 NC_005296.1 1543879 1544739 D sugar ABC transporter permease 1543879..1544739 Rhodopseudomonas palustris CGA009 2693482 NP_946748.1 CDS RPA1398 NC_005296.1 1544736 1545839 D sugar ABC transporter ATP-binding protein 1544736..1545839 Rhodopseudomonas palustris CGA009 2693393 NP_946749.1 CDS RPA1399 NC_005296.1 1545836 1546921 D transport system ATP-binding protein 1545836..1546921 Rhodopseudomonas palustris CGA009 2693357 NP_946750.1 CDS RPA1400 NC_005296.1 1546928 1547713 D glutamine amidotransferase 1546928..1547713 Rhodopseudomonas palustris CGA009 2693347 NP_946751.1 CDS glnAIII NC_005296.1 1547728 1549113 D glutamine synthetase 1547728..1549113 Rhodopseudomonas palustris CGA009 2693277 NP_946752.1 CDS RPA1402 NC_005296.1 1549121 1550575 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Glu-tRNA amidotransferase subunit A 1549121..1550575 Rhodopseudomonas palustris CGA009 2693156 NP_946753.1 CDS RPA1403 NC_005296.1 1550579 1551406 D glutamine amidotransferase 1550579..1551406 Rhodopseudomonas palustris CGA009 2693421 NP_946754.1 CDS RPA1404 NC_005296.1 1551670 1553496 R catalyzes the hydrolysis of allophanate; allophanate hydrolase complement(1551670..1553496) Rhodopseudomonas palustris CGA009 2693408 NP_946755.1 CDS RPA1405 NC_005296.1 1553493 1557041 R urea amidolyase complement(1553493..1557041) Rhodopseudomonas palustris CGA009 2693349 NP_946756.1 CDS RPA1406 NC_005296.1 1557044 1557679 R hypothetical protein complement(1557044..1557679) Rhodopseudomonas palustris CGA009 2693587 NP_946757.1 CDS RPA1407 NC_005296.1 1557682 1558521 R hypothetical protein complement(1557682..1558521) Rhodopseudomonas palustris CGA009 2690097 NP_946758.1 CDS RPA1408 NC_005296.1 1558560 1559351 R ABC transporter complement(1558560..1559351) Rhodopseudomonas palustris CGA009 2691845 NP_946759.1 CDS RPA1409 NC_005296.1 1559348 1560166 R taurine transport system permease complement(1559348..1560166) Rhodopseudomonas palustris CGA009 2689774 NP_946760.1 CDS RPA1410 NC_005296.1 1560201 1561271 R taurine transport system protein complement(1560201..1561271) Rhodopseudomonas palustris CGA009 2689756 NP_946761.1 CDS RPA1411 NC_005296.1 1561646 1562437 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; enoyl-CoA hydratase complement(1561646..1562437) Rhodopseudomonas palustris CGA009 2689747 NP_946762.1 CDS RPA1412 NC_005296.1 1562558 1564117 D fatty-acid--CoA ligase 1562558..1564117 Rhodopseudomonas palustris CGA009 2689724 NP_946763.1 CDS RPA1413 NC_005296.1 1564275 1565213 R IclR family transcriptional regulator complement(1564275..1565213) Rhodopseudomonas palustris CGA009 2689713 NP_946764.1 CDS RPA1414 NC_005296.1 1565333 1566193 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl dehydratase 1565333..1566193 Rhodopseudomonas palustris CGA009 2689846 NP_946765.1 CDS RPA1415 NC_005296.1 1566319 1567563 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched chain amino-acid ABC transporter substrate-binding protein 1566319..1567563 Rhodopseudomonas palustris CGA009 2691775 NP_946766.1 CDS RPA1416 NC_005296.1 1567571 1568290 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched-chain amino acid transport system ATP-binding protein 1567571..1568290 Rhodopseudomonas palustris CGA009 2689571 NP_946767.1 CDS RPA1417 NC_005296.1 1568283 1568987 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched-chain amino acid transport system ATP-binding protein 1568283..1568987 Rhodopseudomonas palustris CGA009 2691743 NP_946768.1 CDS RPA1418 NC_005296.1 1569001 1569864 D transport system permease 1569001..1569864 Rhodopseudomonas palustris CGA009 2689540 NP_946769.1 CDS RPA1419 NC_005296.1 1569861 1570871 D transport system permease 1569861..1570871 Rhodopseudomonas palustris CGA009 2689387 NP_946770.1 CDS ybdE NC_005296.1 1570899 1574057 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; heavy metal efflux pump CzcA complement(1570899..1574057) Rhodopseudomonas palustris CGA009 2690303 NP_946771.1 CDS RPA1421 NC_005296.1 1574054 1575457 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; efflux protein complement(1574054..1575457) Rhodopseudomonas palustris CGA009 2691410 NP_946772.1 CDS RPA1422 NC_005296.1 1575534 1575932 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1575534..1575932) Rhodopseudomonas palustris CGA009 2691407 NP_946773.1 CDS RPA1423 NC_005296.1 1576971 1577915 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1576971..1577915 Rhodopseudomonas palustris CGA009 2689891 NP_946774.1 CDS RPA1424 NC_005296.1 1577902 1579875 D selenocysteine lyase 1577902..1579875 Rhodopseudomonas palustris CGA009 2690286 NP_946775.1 CDS cysE1 NC_005296.1 1580040 1580987 D serine acetyltransferase 1580040..1580987 Rhodopseudomonas palustris CGA009 2693093 NP_946776.1 CDS metN NC_005296.1 1581162 1582283 D part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 1581162..1582283 Rhodopseudomonas palustris CGA009 2691224 NP_946777.1 CDS RPA1427 NC_005296.1 1582273 1582941 D ABC transporter permease 1582273..1582941 Rhodopseudomonas palustris CGA009 2693048 NP_946778.1 CDS RPA1428 NC_005296.1 1582970 1583743 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; lipoprotein 1582970..1583743 Rhodopseudomonas palustris CGA009 2693022 NP_946779.1 CDS RPA1429 NC_005296.1 1584105 1585541 R coenzyme F390 synthetase complement(1584105..1585541) Rhodopseudomonas palustris CGA009 2693012 NP_946780.1 CDS RPA1430 NC_005296.1 1585538 1586323 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; outer membrane protein complement(1585538..1586323) Rhodopseudomonas palustris CGA009 2692983 NP_946781.1 CDS draT1 NC_005296.1 1587454 1588287 D NAD+ ADP-ribosyltransferase 1587454..1588287 Rhodopseudomonas palustris CGA009 2692966 NP_946782.1 CDS RPA1432 NC_005296.1 1588459 1588989 R nitroimidazole resistance protein complement(1588459..1588989) Rhodopseudomonas palustris CGA009 2691184 NP_946783.1 CDS RPA1433 NC_005296.1 1589047 1589637 R hypothetical protein complement(1589047..1589637) Rhodopseudomonas palustris CGA009 2692942 NP_946784.1 CDS RPA1434 NC_005296.1 1589634 1590326 R hypothetical protein complement(1589634..1590326) Rhodopseudomonas palustris CGA009 2691166 NP_946785.1 CDS anfK NC_005296.1 1590406 1591791 R alternative nitrogenase 3 subunit beta complement(1590406..1591791) Rhodopseudomonas palustris CGA009 2692900 NP_946786.1 CDS anfG NC_005296.1 1591804 1592244 R dinitrogenase 3 subunit delta complement(1591804..1592244) Rhodopseudomonas palustris CGA009 2692885 NP_946787.1 CDS anfD NC_005296.1 1592257 1593825 R nitrogenase molybdenum-iron protein subunit alpha complement(1592257..1593825) Rhodopseudomonas palustris CGA009 2691165 NP_946788.1 CDS nifH NC_005296.1 1593875 1594702 R nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; alternative NifH, may be molybdenum-independent; nitrogenase reductase complement(1593875..1594702) Rhodopseudomonas palustris CGA009 2692853 NP_946789.1 CDS anfA NC_005296.1 1595226 1596854 R Fis family transcriptional regulator complement(1595226..1596854) Rhodopseudomonas palustris CGA009 2691154 NP_946790.1 CDS RPA1440 NC_005296.1 1597076 1597600 R hypothetical protein complement(1597076..1597600) Rhodopseudomonas palustris CGA009 2692814 NP_946791.1 CDS RPA1441 NC_005296.1 1597783 1598604 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; uridylate kinase complement(1597783..1598604) Rhodopseudomonas palustris CGA009 2691119 NP_946792.1 CDS RPA1442 NC_005296.1 1598614 1599426 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; uridine monophosphate kinase complement(1598614..1599426) Rhodopseudomonas palustris CGA009 2691885 NP_946793.1 CDS RPA1443 NC_005296.1 1599719 1600534 R GntR family transcriptional regulator complement(1599719..1600534) Rhodopseudomonas palustris CGA009 2692793 NP_946794.1 CDS RPA1444 NC_005296.1 1600910 1601911 D oligopeptide binding protein 1600910..1601911 Rhodopseudomonas palustris CGA009 2690086 NP_946795.1 CDS RPA1445 NC_005296.1 1601908 1602957 D oligopeptide transport ATP-binding protein 1601908..1602957 Rhodopseudomonas palustris CGA009 2692785 NP_946796.1 CDS RPA1446 NC_005296.1 1602948 1604501 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; peptide ABC transporter 1602948..1604501 Rhodopseudomonas palustris CGA009 2692750 NP_946797.1 CDS RPA1447 NC_005296.1 1604542 1605510 D oligopeptide ABC transporter permease 1604542..1605510 Rhodopseudomonas palustris CGA009 2689013 NP_946798.1 CDS RPA1448 NC_005296.1 1605507 1606391 D oligopeptide ABC transporter permease 1605507..1606391 Rhodopseudomonas palustris CGA009 2689031 NP_946799.1 CDS RPA1449 NC_005296.1 1606418 1608133 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 1606418..1608133 Rhodopseudomonas palustris CGA009 2692732 NP_946800.1 CDS RPA1450 NC_005296.1 1608197 1611508 D pyruvate carboxylase 1608197..1611508 Rhodopseudomonas palustris CGA009 2692719 NP_946801.1 CDS RPA1451 NC_005296.1 1611539 1612492 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1611539..1612492 Rhodopseudomonas palustris CGA009 2691081 NP_946802.1 CDS RPA1452 NC_005296.1 1612499 1612654 R hypothetical protein complement(1612499..1612654) Rhodopseudomonas palustris CGA009 2692688 NP_946803.1 CDS norE NC_005296.1 1612792 1613400 D denitrification protein NorE 1612792..1613400 Rhodopseudomonas palustris CGA009 2691058 NP_946804.1 CDS RPA1454 NC_005296.1 1613405 1613674 D hypothetical protein 1613405..1613674 Rhodopseudomonas palustris CGA009 2690153 NP_946805.1 CDS norC NC_005296.1 1613786 1614238 D nitric-oxide reductase subunit C 1613786..1614238 Rhodopseudomonas palustris CGA009 2691005 NP_946806.1 CDS norB NC_005296.1 1614273 1615622 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; nitric-oxide reductase subunit B 1614273..1615622 Rhodopseudomonas palustris CGA009 2690973 NP_946807.1 CDS norQ NC_005296.1 1615677 1616489 D regulatory protein NorQ ATPase 1615677..1616489 Rhodopseudomonas palustris CGA009 2690090 NP_946808.1 CDS norD NC_005296.1 1616615 1618525 D dinitrification protein NorD 1616615..1618525 Rhodopseudomonas palustris CGA009 2690081 NP_946809.1 CDS RPA1461 NC_005296.1 1619349 1620434 R hypothetical protein complement(1619349..1620434) Rhodopseudomonas palustris CGA009 2689937 NP_946810.1 CDS RPA1462 NC_005296.1 1620457 1621665 R hypothetical protein complement(1620457..1621665) Rhodopseudomonas palustris CGA009 2692536 NP_946811.1 CDS ilvD2 NC_005296.1 1621994 1623850 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1621994..1623850 Rhodopseudomonas palustris CGA009 2692514 NP_946812.1 CDS RPA1464 NC_005296.1 1623973 1624776 R glutamine amidotransferase complement(1623973..1624776) Rhodopseudomonas palustris CGA009 2692497 NP_946813.1 CDS RPA1465 NC_005296.1 1625022 1626836 D chloride channel 1625022..1626836 Rhodopseudomonas palustris CGA009 2690884 NP_946814.1 CDS RPA1466 NC_005296.1 1626850 1628655 R catalyzes the hydrolysis of allophanate; allophanate hydrolase complement(1626850..1628655) Rhodopseudomonas palustris CGA009 2690864 NP_946815.1 CDS RPA1467 NC_005296.1 1628652 1629317 R GntR family transcriptional regulator complement(1628652..1629317) Rhodopseudomonas palustris CGA009 2690857 NP_946816.1 CDS RPA1468 NC_005296.1 1629395 1629790 R hypothetical protein complement(1629395..1629790) Rhodopseudomonas palustris CGA009 2690834 NP_946817.1 CDS gatA1 NC_005296.1 1629793 1631250 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(1629793..1631250) Rhodopseudomonas palustris CGA009 2690828 NP_946818.1 CDS RPA1470 NC_005296.1 1631482 1633305 R dipeptide ABC transporter complement(1631482..1633305) Rhodopseudomonas palustris CGA009 2690816 NP_946819.1 CDS RPA1471 NC_005296.1 1633461 1634375 R dipeptide ABC transporter permease complement(1633461..1634375) Rhodopseudomonas palustris CGA009 2692451 NP_946820.1 CDS RPA1472 NC_005296.1 1634380 1635393 R dipeptide transport permease complement(1634380..1635393) Rhodopseudomonas palustris CGA009 2692435 NP_946821.1 CDS RPA1473 NC_005296.1 1635563 1637233 R peptide transport system substrate-binding protein complement(1635563..1637233) Rhodopseudomonas palustris CGA009 2692434 NP_946822.1 CDS RPA1474 NC_005296.1 1637561 1638025 R hypothetical protein complement(1637561..1638025) Rhodopseudomonas palustris CGA009 2690752 NP_946823.1 CDS RPA1475 NC_005296.1 1638270 1638509 R hypothetical protein complement(1638270..1638509) Rhodopseudomonas palustris CGA009 2690128 NP_946824.1 CDS RPA1476 NC_005296.1 1638835 1639842 D periplasmic solute-binding protein 1638835..1639842 Rhodopseudomonas palustris CGA009 2692376 NP_946825.1 CDS RPA1477 NC_005296.1 1639890 1640705 D permease 1639890..1640705 Rhodopseudomonas palustris CGA009 2691871 NP_946826.1 CDS RPA1478 NC_005296.1 1640710 1641495 D permease 1640710..1641495 Rhodopseudomonas palustris CGA009 2689829 NP_946827.1 CDS RPA1479 NC_005296.1 1641492 1642553 D transport system ATP-binding protein 1641492..1642553 Rhodopseudomonas palustris CGA009 2690207 NP_946828.1 CDS cpdA NC_005296.1 1642550 1643407 D ICC protein 1642550..1643407 Rhodopseudomonas palustris CGA009 2690730 NP_946829.1 CDS RPA1481 NC_005296.1 1643544 1643906 D chemotaxis protein CheY 1643544..1643906 Rhodopseudomonas palustris CGA009 2690191 NP_946830.1 CDS RPA1482 NC_005296.1 1644037 1644882 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1644037..1644882 Rhodopseudomonas palustris CGA009 2692257 NP_946831.1 CDS RPA1483 NC_005296.1 1644893 1646128 R NAD binding site:FAD dependent oxidoreductase complement(1644893..1646128) Rhodopseudomonas palustris CGA009 2690697 NP_946832.1 CDS pgm2 NC_005296.1 1646478 1648130 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 1646478..1648130 Rhodopseudomonas palustris CGA009 2692223 NP_946833.1 CDS nnrU NC_005296.1 1648233 1649000 D NnrU family protein 1648233..1649000 Rhodopseudomonas palustris CGA009 2692196 NP_946834.1 CDS RPA1486 NC_005296.1 1649216 1650442 D heme-Cu protein NnrS 1649216..1650442 Rhodopseudomonas palustris CGA009 2690676 NP_946835.1 CDS RPA1487 NC_005296.1 1650481 1650729 D hypothetical protein 1650481..1650729 Rhodopseudomonas palustris CGA009 2690639 NP_946836.1 CDS RPA1488 NC_005296.1 1650733 1651935 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; L-carnitine dehydratase/bile acid-inducible protein F complement(1650733..1651935) Rhodopseudomonas palustris CGA009 2690621 NP_946837.1 CDS RPA1489 NC_005296.1 1652068 1652739 R LuxR family transcriptional regulator complement(1652068..1652739) Rhodopseudomonas palustris CGA009 2690592 NP_946838.1 CDS phyB4 NC_005296.1 1652759 1655071 R bacteriophytochrome PhyB complement(1652759..1655071) Rhodopseudomonas palustris CGA009 2692146 NP_946839.1 CDS pucBe NC_005296.1 1655417 1655572 D light harvesting protein B-800-850 beta subunit E 1655417..1655572 Rhodopseudomonas palustris CGA009 2690556 NP_946840.1 CDS pucAe NC_005296.1 1655585 1655764 D light harvesting protein B-800-850 alpha subunit E 1655585..1655764 Rhodopseudomonas palustris CGA009 2692095 NP_946841.1 CDS pucC NC_005296.1 1655951 1657387 D chlorophyll major facilitator superfamily (MFS) exporter PucC 1655951..1657387 Rhodopseudomonas palustris CGA009 2690540 NP_946842.1 CDS RPA1494 NC_005296.1 1657406 1658056 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1657406..1658056 Rhodopseudomonas palustris CGA009 2692054 NP_946843.1 CDS RPA1495 NC_005296.1 1658072 1658365 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1658072..1658365 Rhodopseudomonas palustris CGA009 2692027 NP_946844.1 CDS RPA1496 NC_005296.1 1658506 1660047 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; monooxygenase 1658506..1660047 Rhodopseudomonas palustris CGA009 2690499 NP_946845.1 CDS mexC1 NC_005296.1 1660402 1661601 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; RND multidrug efflux membrane fusion protein MexC 1660402..1661601 Rhodopseudomonas palustris CGA009 2689361 NP_946846.1 CDS mexD2 NC_005296.1 1661612 1664779 D RND multidrug efflux transporter MexD 1661612..1664779 Rhodopseudomonas palustris CGA009 2689001 NP_946847.1 CDS RPA1499 NC_005296.1 1664916 1665368 D hypothetical protein 1664916..1665368 Rhodopseudomonas palustris CGA009 2690445 NP_946848.1 CDS RPA1500 NC_005296.1 1665626 1666225 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1665626..1666225) Rhodopseudomonas palustris CGA009 2690397 NP_946849.1 CDS RPA1501 NC_005296.1 1666188 1667417 R coenzyme F420 hydrogenase subunit beta complement(1666188..1667417) Rhodopseudomonas palustris CGA009 2690368 NP_946850.1 CDS RPA1502 NC_005296.1 1667478 1667966 R hypothetical protein complement(1667478..1667966) Rhodopseudomonas palustris CGA009 2691992 NP_946851.1 CDS RPA1503 NC_005296.1 1667966 1669576 R hypothetical protein complement(1667966..1669576) Rhodopseudomonas palustris CGA009 2690371 NP_946852.1 CDS RPA1504 NC_005296.1 1669576 1670889 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1669576..1670889) Rhodopseudomonas palustris CGA009 2691437 NP_946853.1 CDS RPA1505 NC_005296.1 1671137 1672120 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; porphobilinogen deaminase 1671137..1672120 Rhodopseudomonas palustris CGA009 2691941 NP_946854.1 CDS bchI NC_005296.1 1672126 1673148 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; magnesium chelatase ATPase subunit I 1672126..1673148 Rhodopseudomonas palustris CGA009 2691624 NP_946855.1 CDS bchD NC_005296.1 1673145 1674917 D involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; part of a complex with BchI, BchD, and BchH; magnesium chelatase subunit D 1673145..1674917 Rhodopseudomonas palustris CGA009 2688938 NP_946856.1 CDS RPA1508 NC_005296.1 1674960 1675691 R hypothetical protein complement(1674960..1675691) Rhodopseudomonas palustris CGA009 2691920 NP_946857.1 CDS hemE NC_005296.1 1676073 1677050 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(1676073..1677050) Rhodopseudomonas palustris CGA009 2691366 NP_946858.1 CDS RPA1510 NC_005296.1 1677230 1678183 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1677230..1678183 Rhodopseudomonas palustris CGA009 2691583 NP_946859.1 CDS RPA1511 NC_005296.1 1678194 1679081 D alpha/beta hydrolase 1678194..1679081 Rhodopseudomonas palustris CGA009 2688978 NP_946860.1 CDS crtI NC_005296.1 1679157 1680692 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; amine oxidase 1679157..1680692 Rhodopseudomonas palustris CGA009 2689120 NP_946861.1 CDS crtB NC_005296.1 1680689 1681756 D squalene/phytoene synthase 1680689..1681756 Rhodopseudomonas palustris CGA009 2688820 NP_946862.1 CDS hemF NC_005296.1 1682058 1682969 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 1682058..1682969 Rhodopseudomonas palustris CGA009 2691498 NP_946863.1 CDS RPA1515 NC_005296.1 1683019 1683855 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1683019..1683855) Rhodopseudomonas palustris CGA009 2691415 NP_946864.1 CDS RPA1516 NC_005296.1 1684156 1684290 D hypothetical protein 1684156..1684290 Rhodopseudomonas palustris CGA009 2691319 NP_946865.1 CDS crtC NC_005296.1 1684504 1685457 R hydroxyneurosporene synthase complement(1684504..1685457) Rhodopseudomonas palustris CGA009 2688862 NP_946866.1 CDS crtD NC_005296.1 1685462 1687021 R FAD dependent oxidoreductase complement(1685462..1687021) Rhodopseudomonas palustris CGA009 2688863 NP_946867.1 CDS crtE NC_005296.1 1687143 1688009 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; polyprenyl synthetase 1687143..1688009 Rhodopseudomonas palustris CGA009 2691526 NP_946868.1 CDS crtF NC_005296.1 1688059 1689180 D O-methyltransferase family 2 1688059..1689180 Rhodopseudomonas palustris CGA009 2688983 NP_946869.1 CDS bchC NC_005296.1 1689269 1690207 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; chlorophyll synthesis pathway protein BchC 1689269..1690207 Rhodopseudomonas palustris CGA009 2691565 NP_946870.1 CDS bchX NC_005296.1 1690207 1691205 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; chlorophyllide reductase iron protein subunit X 1690207..1691205 Rhodopseudomonas palustris CGA009 2691564 NP_946871.1 CDS bchY NC_005296.1 1691229 1692815 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; chlorophyllide reductase subunit Y 1691229..1692815 Rhodopseudomonas palustris CGA009 2691506 NP_946872.1 CDS bchZ NC_005296.1 1692815 1694263 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; chlorophyllide reductase subunit Z 1692815..1694263 Rhodopseudomonas palustris CGA009 2691307 NP_946873.1 CDS pufB NC_005296.1 1694719 1694916 D antenna complex alpha/beta subunit 1694719..1694916 Rhodopseudomonas palustris CGA009 2688734 NP_946874.1 CDS pufA NC_005296.1 1694932 1695123 D light-harvesting complex 1 subunit alpha 1694932..1695123 Rhodopseudomonas palustris CGA009 2688871 NP_946875.1 CDS pufL NC_005296.1 1695255 1696088 D photosynthetic reaction center subunit L 1695255..1696088 Rhodopseudomonas palustris CGA009 2691296 NP_946876.1 CDS pufM NC_005296.1 1696116 1697039 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; photosynthetic reaction center subunit M 1696116..1697039 Rhodopseudomonas palustris CGA009 2691460 NP_946877.1 CDS ppsR1 NC_005296.1 1697302 1698756 D transcriptional regulator PpsR1 1697302..1698756 Rhodopseudomonas palustris CGA009 2691562 NP_946878.1 CDS bchG NC_005296.1 1698749 1699642 D bacteriochlorophyll/chlorophyll a synthase 1698749..1699642 Rhodopseudomonas palustris CGA009 2691561 NP_946879.1 CDS RPA1531 NC_005296.1 1699645 1700961 D light harvesting pigment major facilitator family (MFS) transporter Bch2 1699645..1700961 Rhodopseudomonas palustris CGA009 2691283 NP_946880.1 CDS bchP NC_005296.1 1700963 1702168 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; geranylgeranyl reductase 1700963..1702168 Rhodopseudomonas palustris CGA009 2691273 NP_946881.1 CDS tspO NC_005296.1 1702188 1702652 D TspO/MBR family protein 1702188..1702652 Rhodopseudomonas palustris CGA009 2688888 NP_946882.1 CDS RPA1534 NC_005296.1 1702689 1702961 D hypothetical protein 1702689..1702961 Rhodopseudomonas palustris CGA009 2691608 NP_946883.1 CDS cycA NC_005296.1 1703088 1703507 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; class I cytochrome c complement(1703088..1703507) Rhodopseudomonas palustris CGA009 2691483 NP_946884.1 CDS ppsR2 NC_005296.1 1703829 1705223 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; transcriptional regulator PpsR2 1703829..1705223 Rhodopseudomonas palustris CGA009 2691321 NP_946885.1 CDS RPA1539 NC_005296.1 1707550 1708212 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; heme oxygenase complement(1707550..1708212) Rhodopseudomonas palustris CGA009 2691479 NP_946886.1 CDS RPA1540 NC_005296.1 1708273 1709154 R coenzyme B12-binding protein complement(1708273..1709154) Rhodopseudomonas palustris CGA009 2691489 NP_946887.1 CDS bchF NC_005296.1 1709486 1709971 D 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin oxidoreductase subunit CD 1709486..1709971 Rhodopseudomonas palustris CGA009 2688883 NP_946888.1 CDS bchN NC_005296.1 1709968 1711257 D light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit N 1709968..1711257 Rhodopseudomonas palustris CGA009 2688988 NP_946889.1 CDS bchB NC_005296.1 1711260 1712882 D light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit B 1711260..1712882 Rhodopseudomonas palustris CGA009 2691605 NP_946890.1 CDS bchH NC_005296.1 1712857 1716603 D involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; the enzyme from Rhodobacter capsulatus contains an Fe-S cluster; part of a complex with BchI, BchD, and BchH; magnesium chelatase subunit H 1712857..1716603 Rhodopseudomonas palustris CGA009 2691356 NP_946891.1 CDS chlL NC_005296.1 1716600 1717538 D light-independent; with chlN(bchN) and chlB(bchB) reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll/bacteriochlorophyll production; protochlorophyllide reductase iron-sulfur ATP-binding protein 1716600..1717538 Rhodopseudomonas palustris CGA009 2689137 NP_946892.1 CDS bchM NC_005296.1 1717538 1718239 D catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine; Mg-protoporphyrin IX methyl transferase 1717538..1718239 Rhodopseudomonas palustris CGA009 2688904 NP_946893.1 CDS lhaA NC_005296.1 1718236 1719669 D photosynthetic complex (LH1) assembly protein LhaA 1718236..1719669 Rhodopseudomonas palustris CGA009 2691482 NP_946894.1 CDS puhA NC_005296.1 1719692 1720459 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; photosynthetic reaction center complex subunit H1 1719692..1720459 Rhodopseudomonas palustris CGA009 2691302 NP_946895.1 CDS RPA1549 NC_005296.1 1720456 1721118 D photosynthetic complex assembly protein 1720456..1721118 Rhodopseudomonas palustris CGA009 2691491 NP_946896.1 CDS RPA1550 NC_005296.1 1721134 1721640 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; photosynthetic complex assembly protein 1721134..1721640 Rhodopseudomonas palustris CGA009 2691313 NP_946897.1 CDS RPA1551 NC_005296.1 1721643 1721942 D hypothetical protein 1721643..1721942 Rhodopseudomonas palustris CGA009 2691269 NP_946898.1 CDS RPA1552 NC_005296.1 1721939 1723036 D oxidative; catalyzes the formation of divinylprotochlorophyllide from magnesium-protoporphyrin IX 13-monomethyl ester in isocyclic ring formation in chlorophyll biosynthesis; magnesium-protoporphyrin IX monomethyl ester cyclase 1721939..1723036 Rhodopseudomonas palustris CGA009 2691628 NP_946899.1 CDS RPA1553 NC_005296.1 1723050 1724114 D hypothetical protein 1723050..1724114 Rhodopseudomonas palustris CGA009 2691301 NP_946900.1 CDS hemA NC_005296.1 1724111 1725322 D catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase 1724111..1725322 Rhodopseudomonas palustris CGA009 2691323 NP_946901.1 CDS cbbR NC_005296.1 1725664 1726632 R transcription regulator LysR complement(1725664..1726632) Rhodopseudomonas palustris CGA009 2691486 NP_946902.1 CDS RPA1556 NC_005296.1 1727226 1727915 D phosphotransferase 1727226..1727915 Rhodopseudomonas palustris CGA009 2688891 NP_946903.1 CDS RPA1557 NC_005296.1 1727937 1728773 D response regulator receiver 1727937..1728773 Rhodopseudomonas palustris CGA009 2692873 NP_946904.1 CDS RPA1558 NC_005296.1 1728789 1731500 D sensor histidine kinase 1728789..1731500 Rhodopseudomonas palustris CGA009 2688936 NP_946905.1 CDS rbcL NC_005296.1 1731700 1733157 D type III RuBisCO; involved in carbon fixation; ribulose bisophosphate carboxylase 1731700..1733157 Rhodopseudomonas palustris CGA009 2691334 NP_946906.1 CDS cbbS NC_005296.1 1733171 1733593 D ribulose-bisphosphate carboxylase small chain 1733171..1733593 Rhodopseudomonas palustris CGA009 2688740 NP_946907.1 CDS cbbX NC_005296.1 1733596 1734522 D cbbX protein 1733596..1734522 Rhodopseudomonas palustris CGA009 2688922 NP_946908.1 CDS RPA1562 NC_005296.1 1734580 1735554 R LysR family transcriptional regulator complement(1734580..1735554) Rhodopseudomonas palustris CGA009 2688965 NP_946909.1 CDS RPA1563 NC_005296.1 1735691 1736740 D nitrilase 1735691..1736740 Rhodopseudomonas palustris CGA009 2691266 NP_946910.1 CDS RPA1564 NC_005296.1 1736816 1738132 D urea/short-chain amide transport system substrate-binding protein 1736816..1738132 Rhodopseudomonas palustris CGA009 2688885 NP_946911.1 CDS RPA1565 NC_005296.1 1738141 1739016 D urea/short-chain amide transport system permease 1738141..1739016 Rhodopseudomonas palustris CGA009 2688887 NP_946912.1 CDS RPA1566 NC_005296.1 1739013 1740878 D branched chain amino acid ABC transporter ATP-binding protein 1739013..1740878 Rhodopseudomonas palustris CGA009 2691340 NP_946913.1 CDS RPA1567 NC_005296.1 1740865 1741569 D branched-chain amino acid transport system ATP-binding protein 1740865..1741569 Rhodopseudomonas palustris CGA009 2691470 NP_946914.1 CDS RPA1568 NC_005296.1 1741619 1742401 R alpha/beta hydrolase complement(1741619..1742401) Rhodopseudomonas palustris CGA009 2691474 NP_946915.1 CDS RPA1569 NC_005296.1 1742405 1743700 R catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase complement(1742405..1743700) Rhodopseudomonas palustris CGA009 2691563 NP_946916.1 CDS RPA1570 NC_005296.1 1743857 1745974 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; oligopeptidase B complement(1743857..1745974) Rhodopseudomonas palustris CGA009 2691458 NP_946917.1 CDS dapA1 NC_005296.1 1746102 1746980 D dihydrodipicolinate synthetase 1746102..1746980 Rhodopseudomonas palustris CGA009 2691536 NP_946918.1 CDS RPA1572 NC_005296.1 1747205 1749535 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; carbon-monoxide dehydrogenase large subunit 1747205..1749535 Rhodopseudomonas palustris CGA009 2691541 NP_946919.1 CDS RPA1573 NC_005296.1 1749613 1750227 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; LemA family protein 1749613..1750227 Rhodopseudomonas palustris CGA009 2688994 NP_946920.1 CDS RPA1574 NC_005296.1 1750232 1751155 D hypothetical protein 1750232..1751155 Rhodopseudomonas palustris CGA009 2691623 NP_946921.1 CDS RPA1575 NC_005296.1 1751169 1751666 D hypothetical protein 1751169..1751666 Rhodopseudomonas palustris CGA009 2691619 NP_946922.1 CDS RPA1576 NC_005296.1 1751748 1752359 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glutathione S-transferase complement(1751748..1752359) Rhodopseudomonas palustris CGA009 2689156 NP_946923.1 CDS RPA1577 NC_005296.1 1752568 1753539 D hypothetical protein 1752568..1753539 Rhodopseudomonas palustris CGA009 2691317 NP_946924.1 CDS fpr NC_005296.1 1753696 1754469 R ferredoxin-NADP reductase complement(1753696..1754469) Rhodopseudomonas palustris CGA009 2691572 NP_946925.1 CDS RPA1579 NC_005296.1 1754786 1755994 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; L-carnitine dehydratase/bile acid-inducible protein F complement(1754786..1755994) Rhodopseudomonas palustris CGA009 2691524 NP_946926.1 CDS putA NC_005296.1 1756159 1759167 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(1756159..1759167) Rhodopseudomonas palustris CGA009 2689146 NP_946927.1 CDS RPA1581 NC_005296.1 1759231 1759959 D hypothetical protein 1759231..1759959 Rhodopseudomonas palustris CGA009 2688749 NP_946928.1 CDS cyaA NC_005296.1 1759984 1761765 R ferredoxin:adenylate/guanylate cyclase complement(1759984..1761765) Rhodopseudomonas palustris CGA009 2691365 NP_946929.1 CDS RPA1583 NC_005296.1 1761958 1763067 R hypothetical protein complement(1761958..1763067) Rhodopseudomonas palustris CGA009 2688864 NP_946930.1 CDS RPA1584 NC_005296.1 1763064 1764533 R hypothetical protein complement(1763064..1764533) Rhodopseudomonas palustris CGA009 2688980 NP_946931.1 CDS RPA1585 NC_005296.1 1764777 1765472 D hemolysin III 1764777..1765472 Rhodopseudomonas palustris CGA009 2688927 NP_946932.1 CDS RPA1586 NC_005296.1 1765532 1766332 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; short-chain dehydrogenase/reductase SDR 1765532..1766332 Rhodopseudomonas palustris CGA009 2691591 NP_946933.1 CDS RPA1587 NC_005296.1 1766530 1766814 D hypothetical protein 1766530..1766814 Rhodopseudomonas palustris CGA009 2691587 NP_946934.1 CDS RPA1588 NC_005296.1 1766818 1767900 R L-allo-threonine aldolase complement(1766818..1767900) Rhodopseudomonas palustris CGA009 2691922 NP_946935.1 CDS rpsD NC_005296.1 1768213 1768830 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(1768213..1768830) Rhodopseudomonas palustris CGA009 2691546 NP_946936.1 CDS RPA1590 NC_005296.1 1769020 1769796 R hypothetical protein complement(1769020..1769796) Rhodopseudomonas palustris CGA009 2691962 NP_946937.1 CDS RPA1591 NC_005296.1 1769796 1770191 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1769796..1770191) Rhodopseudomonas palustris CGA009 2691986 NP_946938.1 CDS murI NC_005296.1 1770245 1771039 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(1770245..1771039) Rhodopseudomonas palustris CGA009 2690366 NP_946939.1 CDS RPA1593 NC_005296.1 1771122 1771610 R thioesterase complement(1771122..1771610) Rhodopseudomonas palustris CGA009 2692000 NP_946940.1 CDS trpB-1 NC_005296.1 1771765 1773129 D catalyzes the formation of L-tryptophan from indole and L-serine; tryptophan synthase subunit beta 1771765..1773129 Rhodopseudomonas palustris CGA009 2690380 NP_946941.1 CDS RPA1595 NC_005296.1 1773467 1774417 D hypothetical protein 1773467..1774417 Rhodopseudomonas palustris CGA009 2690377 NP_946942.1 CDS RPA1596 NC_005296.1 1774809 1775177 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; tryptophan synthase subunit beta 1774809..1775177 Rhodopseudomonas palustris CGA009 2690416 NP_946943.1 CDS purQ NC_005296.1 1775573 1777783 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 1775573..1777783 Rhodopseudomonas palustris CGA009 2690442 NP_946944.1 CDS RPA1598 NC_005296.1 1778029 1779210 R peptidyl-prolyl cis-trans isomerase complement(1778029..1779210) Rhodopseudomonas palustris CGA009 2690435 NP_946945.1 CDS RPA1599 NC_005296.1 1779285 1779647 R hypothetical protein complement(1779285..1779647) Rhodopseudomonas palustris CGA009 2691406 NP_946946.1 CDS RPA1600 NC_005296.1 1779811 1780047 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; BolA-like protein 1779811..1780047 Rhodopseudomonas palustris CGA009 2690475 NP_946947.1 CDS RPA1601 NC_005296.1 1780122 1780646 R MarR family transcriptional regulator complement(1780122..1780646) Rhodopseudomonas palustris CGA009 2690482 NP_946948.1 CDS RPA1602 NC_005296.1 1781319 1782041 D hypothetical protein 1781319..1782041 Rhodopseudomonas palustris CGA009 2690500 NP_946949.1 CDS RPA1603 NC_005296.1 1782103 1783170 R fatty acid desaturase complement(1782103..1783170) Rhodopseudomonas palustris CGA009 2690305 NP_946950.1 CDS RPA1604 NC_005296.1 1783527 1784507 R hypothetical protein complement(1783527..1784507) Rhodopseudomonas palustris CGA009 2690308 NP_946951.1 CDS RPA1605 NC_005296.1 1784553 1785812 R hypothetical protein complement(1784553..1785812) Rhodopseudomonas palustris CGA009 2690029 NP_946952.1 CDS RPA1606 NC_005296.1 1786040 1786423 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1786040..1786423 Rhodopseudomonas palustris CGA009 2690278 NP_946953.1 CDS RPA1607 NC_005296.1 1786420 1786962 D CTG start codon; 64% identity to Bradyrhizobium japonicum Bll5710 protein; Appr-1''-p processing enzyme family protein 1786420..1786962 Rhodopseudomonas palustris CGA009 2692066 NP_946954.1 CDS RPA1608 NC_005296.1 1787022 1788302 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; beta-lactamase 1787022..1788302 Rhodopseudomonas palustris CGA009 2690553 NP_946955.1 CDS mdlC NC_005296.1 1788313 1789941 R catalyzes the formation of benzaldehyde from benzoylformate; benzoylformate decarboxylase complement(1788313..1789941) Rhodopseudomonas palustris CGA009 2692115 NP_946956.1 CDS RPA1610 NC_005296.1 1790211 1791068 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1790211..1791068) Rhodopseudomonas palustris CGA009 2692133 NP_946957.1 CDS RPA1611 NC_005296.1 1791081 1792175 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; L-carnitine dehydratase/bile acid-inducible protein F complement(1791081..1792175) Rhodopseudomonas palustris CGA009 2690585 NP_946958.1 CDS RPA1612 NC_005296.1 1792376 1793548 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl-CoA dehydrogenase complement(1792376..1793548) Rhodopseudomonas palustris CGA009 2690588 NP_946959.1 CDS RPA1613 NC_005296.1 1793582 1794847 R cytochrome P450 complement(1793582..1794847) Rhodopseudomonas palustris CGA009 2690185 NP_946960.1 CDS ivd2 NC_005296.1 1795195 1796367 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; isovaleryl-CoA dehydrogenase 1795195..1796367 Rhodopseudomonas palustris CGA009 2690630 NP_946961.1 CDS RPA1615 NC_005296.1 1796463 1797257 D methyltransferase 1796463..1797257 Rhodopseudomonas palustris CGA009 2690643 NP_946962.1 CDS RPA1616 NC_005296.1 1797254 1798060 R hypothetical protein complement(1797254..1798060) Rhodopseudomonas palustris CGA009 2690672 NP_946963.1 CDS RPA1617 NC_005296.1 1798147 1798728 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ErfK/YbiS/YcfS/YnhG protein complement(1798147..1798728) Rhodopseudomonas palustris CGA009 2690041 NP_946964.1 CDS ilvX NC_005296.1 1798909 1800453 D thiamine-pyrophosphate requiring enzyme; hypothetical protein 1798909..1800453 Rhodopseudomonas palustris CGA009 2692204 NP_946965.1 CDS RPA1619 NC_005296.1 1800509 1800997 D hypothetical protein 1800509..1800997 Rhodopseudomonas palustris CGA009 2690688 NP_946966.1 CDS RPA1620 NC_005296.1 1801160 1801480 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1801160..1801480) Rhodopseudomonas palustris CGA009 2690713 NP_946967.1 CDS RPA1621 NC_005296.1 1801680 1802552 D hypothetical protein 1801680..1802552 Rhodopseudomonas palustris CGA009 2692255 NP_946968.1 CDS RPA1622 NC_005296.1 1802706 1803986 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1802706..1803986) Rhodopseudomonas palustris CGA009 2692295 NP_946969.1 CDS RPA1623 NC_005296.1 1804226 1804879 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1804226..1804879) Rhodopseudomonas palustris CGA009 2690743 NP_946970.1 CDS RPA1624 NC_005296.1 1804927 1805433 D hypothetical protein 1804927..1805433 Rhodopseudomonas palustris CGA009 2692367 NP_946971.1 CDS cysQ NC_005296.1 1805442 1806269 R CysQ protein complement(1805442..1806269) Rhodopseudomonas palustris CGA009 2690134 NP_946972.1 CDS RPA1626 NC_005296.1 1806403 1807059 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1806403..1807059 Rhodopseudomonas palustris CGA009 2692410 NP_946973.1 CDS cheA2 NC_005296.1 1807250 1810063 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; chemotaxis histidine kinase CheA 1807250..1810063 Rhodopseudomonas palustris CGA009 2692408 NP_946974.1 CDS cheW2 NC_005296.1 1810060 1810560 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; chemotaxis signal transduction/oligomerization protein CheW2 1810060..1810560 Rhodopseudomonas palustris CGA009 2690745 NP_946975.1 CDS cheY2 NC_005296.1 1810628 1810993 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; chemotaxis response regulator CheY2 1810628..1810993 Rhodopseudomonas palustris CGA009 2690769 NP_946976.1 CDS cheB2 NC_005296.1 1811072 1812247 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1811072..1812247 Rhodopseudomonas palustris CGA009 2692439 NP_946977.1 CDS cheR2 NC_005296.1 1812244 1813122 D chemotaxis methyltransferase CheR2 1812244..1813122 Rhodopseudomonas palustris CGA009 2690796 NP_946978.1 CDS ctrA NC_005296.1 1813413 1814114 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; two-component cell cycle transcriptional regulatorCtrA complement(1813413..1814114) Rhodopseudomonas palustris CGA009 2690820 NP_946979.1 CDS fliI NC_005296.1 1814482 1815807 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1814482..1815807 Rhodopseudomonas palustris CGA009 2690824 NP_946980.1 CDS RPA1634 NC_005296.1 1815917 1816345 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; flagellar export FliJ 1815917..1816345 Rhodopseudomonas palustris CGA009 2690838 NP_946981.1 CDS RPA1635 NC_005296.1 1816522 1817070 D RNA polymerase ECF-type sigma factor 1816522..1817070 Rhodopseudomonas palustris CGA009 2690862 NP_946982.1 CDS RPA1636 NC_005296.1 1817070 1818017 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1817070..1818017 Rhodopseudomonas palustris CGA009 2690872 NP_946983.1 CDS RPA1637 NC_005296.1 1818215 1818415 R hypothetical protein complement(1818215..1818415) Rhodopseudomonas palustris CGA009 2692503 NP_946984.1 CDS flhA NC_005296.1 1818747 1820879 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(1818747..1820879) Rhodopseudomonas palustris CGA009 2692550 NP_946985.1 CDS RPA1639 NC_005296.1 1821142 1822386 D major facilitator superfamily protein 1821142..1822386 Rhodopseudomonas palustris CGA009 2690921 NP_946986.1 CDS RPA1640 NC_005296.1 1822478 1824169 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methyl-accepting chemotaxis receptor/sensory transducer complement(1822478..1824169) Rhodopseudomonas palustris CGA009 2692600 NP_946987.1 CDS RPA1641 NC_005296.1 1825086 1826006 D AraC family transcriptional regulator 1825086..1826006 Rhodopseudomonas palustris CGA009 2689924 NP_946988.1 CDS RPA1642 NC_005296.1 1826387 1827901 D diguanylate cyclase 1826387..1827901 Rhodopseudomonas palustris CGA009 2692650 NP_946989.1 CDS RPA1643 NC_005296.1 1828098 1828964 D high affinity iron permease FTR1 1828098..1828964 Rhodopseudomonas palustris CGA009 2692653 NP_946990.1 CDS RPA1644 NC_005296.1 1828955 1829704 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1828955..1829704) Rhodopseudomonas palustris CGA009 2691027 NP_946991.1 CDS RPA1645 NC_005296.1 1829694 1829921 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1829694..1829921) Rhodopseudomonas palustris CGA009 2691063 NP_946992.1 CDS RPA1646 NC_005296.1 1830020 1830289 R hypothetical protein complement(1830020..1830289) Rhodopseudomonas palustris CGA009 2689883 NP_946993.1 CDS RPA1647 NC_005296.1 1830366 1831367 R alpha/beta hydrolase fold protein complement(1830366..1831367) Rhodopseudomonas palustris CGA009 2692696 NP_946994.1 CDS RPA1648 NC_005296.1 1831520 1832782 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; permease 1831520..1832782 Rhodopseudomonas palustris CGA009 2692723 NP_946995.1 CDS RPA1649 NC_005296.1 1832779 1834005 D hypothetical protein 1832779..1834005 Rhodopseudomonas palustris CGA009 2689007 NP_946996.1 CDS RPA1650 NC_005296.1 1833998 1834678 D ABC transporter ATP-binding protein 1833998..1834678 Rhodopseudomonas palustris CGA009 2689063 NP_946997.1 CDS RPA1651 NC_005296.1 1834778 1835995 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; leucine/isoleucine/valine-binding protein complement(1834778..1835995) Rhodopseudomonas palustris CGA009 2692757 NP_946998.1 CDS RPA1652 NC_005296.1 1836597 1837418 D flagellar basal-body rod protein FlgG 1836597..1837418 Rhodopseudomonas palustris CGA009 2692780 NP_946999.1 CDS RPA1653 NC_005296.1 1837519 1837917 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1837519..1837917) Rhodopseudomonas palustris CGA009 2690094 NP_947000.1 CDS RPA1654 NC_005296.1 1838052 1839065 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; oxido-reductase complement(1838052..1839065) Rhodopseudomonas palustris CGA009 2691106 NP_947001.1 CDS RPA1655 NC_005296.1 1839226 1840434 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter urea/short-chain binding protein complement(1839226..1840434) Rhodopseudomonas palustris CGA009 2691115 NP_947002.1 CDS RPA1656 NC_005296.1 1840537 1841232 D urease accessory protein 1840537..1841232 Rhodopseudomonas palustris CGA009 2691120 NP_947003.1 CDS RPA1657 NC_005296.1 1841261 1842475 R diguanylate cyclase complement(1841261..1842475) Rhodopseudomonas palustris CGA009 2692835 NP_947004.1 CDS ptpS NC_005296.1 1843254 1843616 D 6-pyruvoyl tetrahydrobiopterin synthase 1843254..1843616 Rhodopseudomonas palustris CGA009 2691161 NP_947005.1 CDS RPA1659 NC_005296.1 1843683 1844273 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hemerythrin HHE cation binding protein complement(1843683..1844273) Rhodopseudomonas palustris CGA009 2692878 NP_947006.1 CDS RPA1660 NC_005296.1 1844415 1847336 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cation transporting P-type ATPase complement(1844415..1847336) Rhodopseudomonas palustris CGA009 2692887 NP_947007.1 CDS RPA1661 NC_005296.1 1847388 1847663 D hypothetical protein 1847388..1847663 Rhodopseudomonas palustris CGA009 2692921 NP_947008.1 CDS RPA1662 NC_005296.1 1847694 1848374 R hypothetical protein complement(1847694..1848374) Rhodopseudomonas palustris CGA009 2692937 NP_947009.1 CDS hpaD NC_005296.1 1848482 1849333 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 3,4-dihydroxyphenylacetate 2,3-dioxygenase complement(1848482..1849333) Rhodopseudomonas palustris CGA009 2691187 NP_947010.1 CDS RPA1664 NC_005296.1 1849361 1849903 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glyoxalase/bleomycin resistance protein/dioxygenase complement(1849361..1849903) Rhodopseudomonas palustris CGA009 2691208 NP_947011.1 CDS RPA1665 NC_005296.1 1850059 1850361 R hypothetical protein complement(1850059..1850361) Rhodopseudomonas palustris CGA009 2692977 NP_947012.1 CDS hemN1 NC_005296.1 1850616 1851965 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1850616..1851965) Rhodopseudomonas palustris CGA009 2693004 NP_947013.1 CDS bchJ NC_005296.1 1851994 1852656 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; bacteriochlorophyll 4-vinyl reductase complement(1851994..1852656) Rhodopseudomonas palustris CGA009 2691207 NP_947014.1 CDS bchE NC_005296.1 1852676 1854373 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; magnesium-protoporphyrin IX monomethyl ester cyclase complement(1852676..1854373) Rhodopseudomonas palustris CGA009 2690011 NP_947015.1 CDS RPA1669 NC_005296.1 1854531 1854959 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1854531..1854959) Rhodopseudomonas palustris CGA009 2693039 NP_947016.1 CDS RPA1670 NC_005296.1 1855181 1855921 D metallophosphoesterase 1855181..1855921 Rhodopseudomonas palustris CGA009 2691223 NP_947017.1 CDS RPA1671 NC_005296.1 1855925 1857364 D serine/threonine protein kinase 1855925..1857364 Rhodopseudomonas palustris CGA009 2693088 NP_947018.1 CDS RPA1672 NC_005296.1 1857410 1858060 R transport-associated protein complement(1857410..1858060) Rhodopseudomonas palustris CGA009 2689894 NP_947019.1 CDS RPA1673 NC_005296.1 1858439 1860790 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; phosphoketolase 1858439..1860790 Rhodopseudomonas palustris CGA009 2689792 NP_947020.1 CDS cheY3 NC_005296.1 1860968 1861471 D response regulator receiver CheY3 1860968..1861471 Rhodopseudomonas palustris CGA009 2689379 NP_947021.1 CDS RPA1675 NC_005296.1 1862118 1864268 D methyl-accepting chemotaxis receptor/sensory transducer 1862118..1864268 Rhodopseudomonas palustris CGA009 2690159 NP_947022.1 CDS cheA3 NC_005296.1 1864447 1867260 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; chemotaxis histidine kinase CheA 1864447..1867260 Rhodopseudomonas palustris CGA009 2691685 NP_947023.1 CDS cheW3 NC_005296.1 1867257 1867757 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; chemotaxis signal transduction/oligomerization protein CheW3 1867257..1867757 Rhodopseudomonas palustris CGA009 2691712 NP_947024.1 CDS cheR3 NC_005296.1 1867811 1868686 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; chemotaxis methyltransferase CheR3 1867811..1868686 Rhodopseudomonas palustris CGA009 2689382 NP_947025.1 CDS RPA1679 NC_005296.1 1868698 1869012 D hypothetical protein 1868698..1869012 Rhodopseudomonas palustris CGA009 2689390 NP_947026.1 CDS RPA1680 NC_005296.1 1869241 1870491 D response regulator and cylclic diguanylate phosphodiesterase 1869241..1870491 Rhodopseudomonas palustris CGA009 2689539 NP_947027.1 CDS RPA1681 NC_005296.1 1870522 1873113 R sensor histidine kinase complement(1870522..1873113) Rhodopseudomonas palustris CGA009 2689553 NP_947028.1 CDS RPA1682 NC_005296.1 1873536 1874162 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; LuxR family transcriptional regulator 1873536..1874162 Rhodopseudomonas palustris CGA009 2691789 NP_947029.1 CDS RPA1683 NC_005296.1 1874213 1874995 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; short-chain dehydrogenase/reductase SDR complement(1874213..1874995) Rhodopseudomonas palustris CGA009 2689902 NP_947030.1 CDS RPA1684 NC_005296.1 1875104 1875865 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; short-chain dehydrogenase/reductase SDR 1875104..1875865 Rhodopseudomonas palustris CGA009 2691798 NP_947031.1 CDS RPA1685 NC_005296.1 1876349 1880449 D serine protease/outer membrane autotransporter 1876349..1880449 Rhodopseudomonas palustris CGA009 2689741 NP_947032.1 CDS RPA1686 NC_005296.1 1880602 1882206 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glucose-methanol-choline oxidoreductase complement(1880602..1882206) Rhodopseudomonas palustris CGA009 2691822 NP_947033.1 CDS RPA1687 NC_005296.1 1882277 1883710 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; aldehyde dehydrogenase complement(1882277..1883710) Rhodopseudomonas palustris CGA009 2689757 NP_947034.1 CDS RPA1688 NC_005296.1 1884296 1884817 D N-acetyltransferase GCN5 1884296..1884817 Rhodopseudomonas palustris CGA009 2690098 NP_947035.1 CDS RPA1689 NC_005296.1 1885144 1886307 D hypothetical protein 1885144..1886307 Rhodopseudomonas palustris CGA009 2688786 NP_947036.1 CDS RPA1690 NC_005296.1 1886304 1886744 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1886304..1886744) Rhodopseudomonas palustris CGA009 2689597 NP_947037.1 CDS matE3 NC_005296.1 1886876 1888249 R cation efflux pump complement(1886876..1888249) Rhodopseudomonas palustris CGA009 2689588 NP_947038.1 CDS RPA1692 NC_005296.1 1888524 1889759 D major facilitator transporter 1888524..1889759 Rhodopseudomonas palustris CGA009 2689233 NP_947039.1 CDS sodB NC_005296.1 1889961 1890557 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; superoxide dismutase 1889961..1890557 Rhodopseudomonas palustris CGA009 2689606 NP_947040.1 CDS ccrB NC_005296.1 1890635 1891084 D may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 1890635..1891084 Rhodopseudomonas palustris CGA009 2689425 NP_947041.1 CDS RPA1695 NC_005296.1 1891147 1892007 R cupin complement(1891147..1892007) Rhodopseudomonas palustris CGA009 2691647 NP_947042.1 CDS RPA1696 NC_005296.1 1892427 1893062 D hypothetical protein 1892427..1893062 Rhodopseudomonas palustris CGA009 2693128 NP_947043.1 CDS RPA1697 NC_005296.1 1893265 1893807 R competence-damaged protein complement(1893265..1893807) Rhodopseudomonas palustris CGA009 2691661 NP_947044.1 CDS RPA1698 NC_005296.1 1893871 1894614 R hypothetical protein complement(1893871..1894614) Rhodopseudomonas palustris CGA009 2688766 NP_947045.1 CDS RPA1699 NC_005296.1 1894760 1896547 D acyl-CoA dehydrogenase 1894760..1896547 Rhodopseudomonas palustris CGA009 2689486 NP_947046.1 CDS RPA1700 NC_005296.1 1896682 1898184 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(1896682..1898184) Rhodopseudomonas palustris CGA009 2689336 NP_947047.1 CDS RPA1701 NC_005296.1 1898566 1899336 R hypothetical protein complement(1898566..1899336) Rhodopseudomonas palustris CGA009 2689277 NP_947048.1 CDS RPA1702 NC_005296.1 1899531 1901087 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(1899531..1901087) Rhodopseudomonas palustris CGA009 2689475 NP_947049.1 CDS RPA1703 NC_005296.1 1901366 1902541 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(1901366..1902541) Rhodopseudomonas palustris CGA009 2691676 NP_947050.1 CDS RPA1704 NC_005296.1 1902643 1903350 D TetR family transcriptional regulator 1902643..1903350 Rhodopseudomonas palustris CGA009 2691361 NP_947051.1 CDS RPA1705 NC_005296.1 1903489 1904565 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 3-hydroxyacyl-CoA dehydrogenase 1903489..1904565 Rhodopseudomonas palustris CGA009 2689350 NP_947052.1 CDS RPA1706 NC_005296.1 1904789 1905595 D enoyl-CoA hydratase 1904789..1905595 Rhodopseudomonas palustris CGA009 2689644 NP_947053.1 CDS fcs1 NC_005296.1 1905646 1907520 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl-CoA synthetase 1905646..1907520 Rhodopseudomonas palustris CGA009 2691654 NP_947054.1 CDS RPA1708 NC_005296.1 1907687 1908814 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl-CoA dehydrogenase 1907687..1908814 Rhodopseudomonas palustris CGA009 2689177 NP_947055.1 CDS RPA1709 NC_005296.1 1908951 1910198 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl-CoA dehydrogenase 1908951..1910198 Rhodopseudomonas palustris CGA009 2689193 NP_947056.1 CDS RPA1710 NC_005296.1 1910349 1911593 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl-CoA dehydrogenase 1910349..1911593 Rhodopseudomonas palustris CGA009 2691370 NP_947057.1 CDS pnbA NC_005296.1 1911756 1912454 D nitroreductase 1911756..1912454 Rhodopseudomonas palustris CGA009 2689231 NP_947058.1 CDS RPA1712 NC_005296.1 1912856 1913638 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; enoyl-CoA hydratase complement(1912856..1913638) Rhodopseudomonas palustris CGA009 2689174 NP_947059.1 CDS RPA1713 NC_005296.1 1913941 1914615 D cyclic nucleotide-binding protein 1913941..1914615 Rhodopseudomonas palustris CGA009 2693127 NP_947060.1 CDS RPA1714 NC_005296.1 1914669 1915511 D hypothetical protein 1914669..1915511 Rhodopseudomonas palustris CGA009 2693136 NP_947061.1 CDS RPA1715 NC_005296.1 1915666 1916166 D hypothetical protein 1915666..1916166 Rhodopseudomonas palustris CGA009 2689650 NP_947062.1 CDS RPA1716 NC_005296.1 1916440 1918650 D diguanylate cyclase 1916440..1918650 Rhodopseudomonas palustris CGA009 2693117 NP_947063.1 CDS RPA1717 NC_005296.1 1918857 1919243 R hypothetical protein complement(1918857..1919243) Rhodopseudomonas palustris CGA009 2689481 NP_947064.1 CDS RPA1718 NC_005296.1 1919490 1919897 D hypothetical protein 1919490..1919897 Rhodopseudomonas palustris CGA009 2689273 NP_947065.1 CDS RPA1719 NC_005296.1 1919904 1920236 R hypothetical protein complement(1919904..1920236) Rhodopseudomonas palustris CGA009 2689269 NP_947066.1 CDS RPA1720 NC_005296.1 1920300 1920920 R hypothetical protein complement(1920300..1920920) Rhodopseudomonas palustris CGA009 2689470 NP_947067.1 CDS RPA1721 NC_005296.1 1921022 1921939 D LysR family transcriptional regulator 1921022..1921939 Rhodopseudomonas palustris CGA009 2689646 NP_947068.1 CDS alkB NC_005296.1 1921936 1922586 D alkylated DNA repair protein 1921936..1922586 Rhodopseudomonas palustris CGA009 2689525 NP_947069.1 CDS paaK NC_005296.1 1922593 1923924 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; phenylacetyl-CoA ligase complement(1922593..1923924) Rhodopseudomonas palustris CGA009 2689489 NP_947070.1 CDS paaI NC_005296.1 1923939 1924412 R phenylacetic acid degredation protein complement(1923939..1924412) Rhodopseudomonas palustris CGA009 2691674 NP_947071.1 CDS RPA1725 NC_005296.1 1924637 1926676 D catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA; bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase 1924637..1926676 Rhodopseudomonas palustris CGA009 2689220 NP_947072.1 CDS RPA1726 NC_005296.1 1926733 1927749 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; oxidoreductase 1926733..1927749 Rhodopseudomonas palustris CGA009 2689459 NP_947073.1 CDS RPA1727 NC_005296.1 1927991 1928728 D hypothetical protein 1927991..1928728 Rhodopseudomonas palustris CGA009 2689620 NP_947074.1 CDS RPA1728 NC_005296.1 1929247 1933506 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1929247..1933506) Rhodopseudomonas palustris CGA009 2689578 NP_947075.1 CDS RPA1729 NC_005296.1 1934248 1935210 R fatty acid desaturase complement(1934248..1935210) Rhodopseudomonas palustris CGA009 2691650 NP_947076.1 CDS RPA1730 NC_005296.1 1935263 1936486 R OsmC-like protein complement(1935263..1936486) Rhodopseudomonas palustris CGA009 2689482 NP_947077.1 CDS RPA1731 NC_005296.1 1936665 1937330 R molybdopterin oxidoreductase complement(1936665..1937330) Rhodopseudomonas palustris CGA009 2689652 NP_947078.1 CDS RPA1732 NC_005296.1 1937353 1938552 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cytochrome P450 complement(1937353..1938552) Rhodopseudomonas palustris CGA009 2689608 NP_947079.1 CDS fdxA NC_005296.1 1938621 1938848 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ferredoxin complement(1938621..1938848) Rhodopseudomonas palustris CGA009 2689580 NP_947080.1 CDS RPA1734 NC_005296.1 1938948 1940381 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; amidotransferase complement(1938948..1940381) Rhodopseudomonas palustris CGA009 2691648 NP_947081.1 CDS bglA NC_005296.1 1941645 1943021 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; beta-glucosidase complement(1941645..1943021) Rhodopseudomonas palustris CGA009 2689582 NP_947082.1 CDS RPA1737 NC_005296.1 1943207 1943986 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; short chain dehydrogenase complement(1943207..1943986) Rhodopseudomonas palustris CGA009 2693145 NP_947083.1 CDS RPA1738 NC_005296.1 1944029 1945513 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched-chain amino acid transport system ATPase complement(1944029..1945513) Rhodopseudomonas palustris CGA009 2689601 NP_947084.1 CDS RPA1739 NC_005296.1 1945513 1946436 R branched-chain amino acid transport system permease complement(1945513..1946436) Rhodopseudomonas palustris CGA009 2689205 NP_947085.1 CDS RPA1740 NC_005296.1 1946438 1947313 R branched chain amino acid ABC transporter permease complement(1946438..1947313) Rhodopseudomonas palustris CGA009 2690099 NP_947086.1 CDS RPA1741 NC_005296.1 1947510 1948760 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched chain amino-acid ABC transporter substrate-binding protein complement(1947510..1948760) Rhodopseudomonas palustris CGA009 2689893 NP_947087.1 CDS yeaU NC_005296.1 1948929 1950047 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; tartrate dehydrogenase 1948929..1950047 Rhodopseudomonas palustris CGA009 2691904 NP_947088.1 CDS RPA1743 NC_005296.1 1950081 1950920 R hypothetical protein complement(1950081..1950920) Rhodopseudomonas palustris CGA009 2690004 NP_947089.1 CDS serA NC_005296.1 1951061 1951975 R NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(1951061..1951975) Rhodopseudomonas palustris CGA009 2689748 NP_947090.1 CDS RPA1745 NC_005296.1 1952010 1953260 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(1952010..1953260) Rhodopseudomonas palustris CGA009 2691804 NP_947091.1 CDS RPA1746 NC_005296.1 1953330 1954280 R LysR family transcriptional regulator complement(1953330..1954280) Rhodopseudomonas palustris CGA009 2689715 NP_947092.1 CDS RPA1747 NC_005296.1 1954396 1955214 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1954396..1955214 Rhodopseudomonas palustris CGA009 2689568 NP_947093.1 CDS RPA1748 NC_005296.1 1955272 1956519 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched-chain amino acid transport system substrate-binding protein 1955272..1956519 Rhodopseudomonas palustris CGA009 2691793 NP_947094.1 CDS RPA1749 NC_005296.1 1956692 1957525 D inner-membrane translocator 1956692..1957525 Rhodopseudomonas palustris CGA009 2691779 NP_947095.1 CDS RPA1750 NC_005296.1 1957525 1958511 D inner-membrane translocator 1957525..1958511 Rhodopseudomonas palustris CGA009 2689564 NP_947096.1 CDS RPA1751 NC_005296.1 1958508 1959242 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched chain amino acid ABC transporter ATP-binding protein 1958508..1959242 Rhodopseudomonas palustris CGA009 2689534 NP_947097.1 CDS RPA1752 NC_005296.1 1959226 1959930 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched chain amino acid ABC transporter ATP-binding protein 1959226..1959930 Rhodopseudomonas palustris CGA009 2691718 NP_947098.1 CDS RPA1753 NC_005296.1 1960124 1960903 D hypothetical protein 1960124..1960903 Rhodopseudomonas palustris CGA009 2690334 NP_947099.1 CDS ragC NC_005296.1 1961116 1964310 D cation efflux system protein 1961116..1964310 Rhodopseudomonas palustris CGA009 2691692 NP_947100.1 CDS ragD NC_005296.1 1964300 1965502 D cation efflux pump HlyD 1964300..1965502 Rhodopseudomonas palustris CGA009 2691260 NP_947101.1 CDS RPA1756 NC_005296.1 1965670 1967184 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(1965670..1967184) Rhodopseudomonas palustris CGA009 2690163 NP_947102.1 CDS RPA1757 NC_005296.1 1967224 1968003 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; oxoacyl carrier protein reductase complement(1967224..1968003) Rhodopseudomonas palustris CGA009 2690154 NP_947103.1 CDS RPA1758 NC_005296.1 1968171 1968971 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1968171..1968971 Rhodopseudomonas palustris CGA009 2689684 NP_947104.1 CDS RPA1759 NC_005296.1 1968979 1969974 D tyrosine protein kinase:aminoglycoside phosphotransferase 1968979..1969974 Rhodopseudomonas palustris CGA009 2690288 NP_947105.1 CDS RPA1760 NC_005296.1 1969993 1970367 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 1969993..1970367 Rhodopseudomonas palustris CGA009 2690298 NP_947106.1 CDS RPA1761 NC_005296.1 1970699 1971478 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(1970699..1971478) Rhodopseudomonas palustris CGA009 2693078 NP_947107.1 CDS RPA1762 NC_005296.1 1971547 1972878 D acyl-CoA dehydrogenase 1971547..1972878 Rhodopseudomonas palustris CGA009 2693072 NP_947108.1 CDS RPA1763 NC_005296.1 1973251 1974828 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(1973251..1974828) Rhodopseudomonas palustris CGA009 2693055 NP_947109.1 CDS RPA1764 NC_005296.1 1975165 1976037 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; short-chain dehydrogenase/reductase SDR complement(1975165..1976037) Rhodopseudomonas palustris CGA009 2693030 NP_947110.1 CDS RPA1765 NC_005296.1 1976145 1976957 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1976145..1976957 Rhodopseudomonas palustris CGA009 2690015 NP_947111.1 CDS RPA1766 NC_005296.1 1977106 1978650 D activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1977106..1978650 Rhodopseudomonas palustris CGA009 2691219 NP_947112.1 CDS RPA1767 NC_005296.1 1978647 1980956 R sensor histidine kinase/response regulator complement(1978647..1980956) Rhodopseudomonas palustris CGA009 2691217 NP_947113.1 CDS RPA1768 NC_005296.1 1981208 1981402 R hypothetical protein complement(1981208..1981402) Rhodopseudomonas palustris CGA009 2692978 NP_947114.1 CDS RPA1769 NC_005296.1 1981608 1982498 R LysR family transcriptional regulator complement(1981608..1982498) Rhodopseudomonas palustris CGA009 2690046 NP_947115.1 CDS RPA1770 NC_005296.1 1982495 1983559 R hypothetical protein complement(1982495..1983559) Rhodopseudomonas palustris CGA009 2692965 NP_947116.1 CDS RPA1771 NC_005296.1 1983838 1984620 D hypothetical protein 1983838..1984620 Rhodopseudomonas palustris CGA009 2692945 NP_947117.1 CDS ppc NC_005296.1 1984721 1987531 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 1984721..1987531 Rhodopseudomonas palustris CGA009 2692915 NP_947118.1 CDS RPA1773 NC_005296.1 1987669 1987998 D DMT family permease 1987669..1987998 Rhodopseudomonas palustris CGA009 2692893 NP_947119.1 CDS RPA1774 NC_005296.1 1988407 1989732 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; porin 1988407..1989732 Rhodopseudomonas palustris CGA009 2691162 NP_947120.1 CDS RPA1775 NC_005296.1 1989978 1990892 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; dehydrogenase complement(1989978..1990892) Rhodopseudomonas palustris CGA009 2692830 NP_947121.1 CDS RPA1776 NC_005296.1 1991177 1992316 R lipid transfer protein complement(1991177..1992316) Rhodopseudomonas palustris CGA009 2692821 NP_947122.1 CDS RPA1777 NC_005296.1 1992322 1992735 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(1992322..1992735) Rhodopseudomonas palustris CGA009 2692809 NP_947123.1 CDS RPA1778 NC_005296.1 1993022 1994380 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 1993022..1994380 Rhodopseudomonas palustris CGA009 2691114 NP_947124.1 CDS RPA1779 NC_005296.1 1994373 1995059 D hypothetical protein 1994373..1995059 Rhodopseudomonas palustris CGA009 2691900 NP_947125.1 CDS RPA1780 NC_005296.1 1995247 1995837 R phenylacetic acid degradation-like protein complement(1995247..1995837) Rhodopseudomonas palustris CGA009 2691108 NP_947126.1 CDS phbH NC_005296.1 1996035 1997207 R catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase complement(1996035..1997207) Rhodopseudomonas palustris CGA009 2690091 NP_947127.1 CDS RPA1782 NC_005296.1 1997376 1998386 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; TRAP dicarboxylate family transporter subunit DctP 1997376..1998386 Rhodopseudomonas palustris CGA009 2688858 NP_947128.1 CDS RPA1783 NC_005296.1 1998472 1999125 D TRAP dicarboxylate family transporter subunit DctQ 1998472..1999125 Rhodopseudomonas palustris CGA009 2690320 NP_947129.1 CDS RPA1784 NC_005296.1 1999132 2000439 D TRAP dicarboxylate family transporter DctM subunit 1999132..2000439 Rhodopseudomonas palustris CGA009 2689015 NP_947130.1 CDS RPA1785 NC_005296.1 2000607 2001068 D hypothetical protein 2000607..2001068 Rhodopseudomonas palustris CGA009 2689051 NP_947131.1 CDS RPA1786 NC_005296.1 2001366 2002172 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2001366..2002172 Rhodopseudomonas palustris CGA009 2689034 NP_947132.1 CDS fcs2 NC_005296.1 2002181 2004079 D catalyzes the conversion of ferulic acid to feruloyl-CoA; feruloyl-CoA synthase 2002181..2004079 Rhodopseudomonas palustris CGA009 2692733 NP_947133.1 CDS RPA1788 NC_005296.1 2004318 2004737 D 4-hydroxybenzoyl-CoA thioesterase 2004318..2004737 Rhodopseudomonas palustris CGA009 2692725 NP_947134.1 CDS RPA1789 NC_005296.1 2004817 2005974 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched-chain amino acid transport system substrate-binding protein 2004817..2005974 Rhodopseudomonas palustris CGA009 2692709 NP_947135.1 CDS RPA1790 NC_005296.1 2006289 2007107 D diguanylate cyclase 2006289..2007107 Rhodopseudomonas palustris CGA009 2691077 NP_947136.1 CDS RPA1791 NC_005296.1 2007080 2007799 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched-chain amino acid transport system ATP-binding protein complement(2007080..2007799) Rhodopseudomonas palustris CGA009 2690211 NP_947137.1 CDS RPA1792 NC_005296.1 2007796 2009568 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched-chain amino acid transport system ATP-binding protein complement(2007796..2009568) Rhodopseudomonas palustris CGA009 2691048 NP_947138.1 CDS RPA1793 NC_005296.1 2009574 2010614 R branched-chain amino acid transport system permease complement(2009574..2010614) Rhodopseudomonas palustris CGA009 2692673 NP_947139.1 CDS RPA1794 NC_005296.1 2010746 2011297 D MarR family transcriptional regulator 2010746..2011297 Rhodopseudomonas palustris CGA009 2692658 NP_947140.1 CDS RPA1795 NC_005296.1 2011435 2013261 R potassium-efflux system protein complement(2011435..2013261) Rhodopseudomonas palustris CGA009 2692641 NP_947141.1 CDS RPA1796 NC_005296.1 2013917 2015491 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; adenylate/guanylate cyclase 2013917..2015491 Rhodopseudomonas palustris CGA009 2690969 NP_947142.1 CDS RPA1797 NC_005296.1 2015733 2017013 R hypothetical protein complement(2015733..2017013) Rhodopseudomonas palustris CGA009 2692609 NP_947143.1 CDS RPA1798 NC_005296.1 2017212 2018447 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched chain amino acid ABC transporter periplasmic binding protein complement(2017212..2018447) Rhodopseudomonas palustris CGA009 2690959 NP_947144.1 CDS ung NC_005296.1 2018690 2020177 R uracil-DNA glycosylase complement(2018690..2020177) Rhodopseudomonas palustris CGA009 2690079 NP_947145.1 CDS RPA1800 NC_005296.1 2020274 2021524 R elongator protein 3/MiaB/NifB complement(2020274..2021524) Rhodopseudomonas palustris CGA009 2690949 NP_947146.1 CDS RPA1801 NC_005296.1 2021694 2022479 D hypothetical protein 2021694..2022479 Rhodopseudomonas palustris CGA009 2692590 NP_947147.1 CDS RPA1802 NC_005296.1 2022532 2023968 D hypothetical protein 2022532..2023968 Rhodopseudomonas palustris CGA009 2690941 NP_947148.1 CDS dnaE2 NC_005296.1 2024122 2027709 D DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase 2024122..2027709 Rhodopseudomonas palustris CGA009 2692528 NP_947149.1 CDS RPA1804 NC_005296.1 2027715 2028668 R hypothetical protein complement(2027715..2028668) Rhodopseudomonas palustris CGA009 2692566 NP_947150.1 CDS RPA1805 NC_005296.1 2028745 2029695 D LysR family transcriptional regulator 2028745..2029695 Rhodopseudomonas palustris CGA009 2692547 NP_947151.1 CDS RPA1806 NC_005296.1 2029742 2031139 D L-carnitine dehydratase/bile acid-inducible protein F 2029742..2031139 Rhodopseudomonas palustris CGA009 2692530 NP_947152.1 CDS RPA1807 NC_005296.1 2031359 2032597 D HlyD family heavy metal efflux protein 2031359..2032597 Rhodopseudomonas palustris CGA009 2692519 NP_947153.1 CDS czcA1 NC_005296.1 2032754 2035876 D RND divalent metal cation efflux transporter CzcA 2032754..2035876 Rhodopseudomonas palustris CGA009 2692499 NP_947154.1 CDS RPA1809 NC_005296.1 2036076 2036393 D hypothetical protein 2036076..2036393 Rhodopseudomonas palustris CGA009 2690879 NP_947155.1 CDS RPA1810 NC_005296.1 2036488 2037930 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; outer membrane protein complement(2036488..2037930) Rhodopseudomonas palustris CGA009 2690878 NP_947156.1 CDS RPA1811 NC_005296.1 2038105 2038884 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; enoyl-CoA hydratase complement(2038105..2038884) Rhodopseudomonas palustris CGA009 2690868 NP_947157.1 CDS RPA1812 NC_005296.1 2038968 2039705 R hypothetical protein complement(2038968..2039705) Rhodopseudomonas palustris CGA009 2690856 NP_947158.1 CDS RPA1813 NC_005296.1 2039897 2040505 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2039897..2040505 Rhodopseudomonas palustris CGA009 2690845 NP_947159.1 CDS RPA1814 NC_005296.1 2040502 2041146 D hypothetical protein 2040502..2041146 Rhodopseudomonas palustris CGA009 2690827 NP_947160.1 CDS RPA1815 NC_005296.1 2041227 2041607 D hypothetical protein 2041227..2041607 Rhodopseudomonas palustris CGA009 2692470 NP_947161.1 CDS RPA1816 NC_005296.1 2041668 2043896 D outer membrane receptor for iron transport 2041668..2043896 Rhodopseudomonas palustris CGA009 2690797 NP_947162.1 CDS RPA1817 NC_005296.1 2043919 2045028 R hypothetical protein complement(2043919..2045028) Rhodopseudomonas palustris CGA009 2690763 NP_947163.1 CDS RPA1818 NC_005296.1 2045066 2046355 R diguanylate cyclase complement(2045066..2046355) Rhodopseudomonas palustris CGA009 2690755 NP_947164.1 CDS RPA1819 NC_005296.1 2046600 2047169 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2046600..2047169 Rhodopseudomonas palustris CGA009 2692424 NP_947165.1 CDS RPA1820 NC_005296.1 2047166 2047999 D hypothetical protein 2047166..2047999 Rhodopseudomonas palustris CGA009 2692415 NP_947166.1 CDS RPA1821 NC_005296.1 2048486 2048995 D hypothetical protein 2048486..2048995 Rhodopseudomonas palustris CGA009 2690742 NP_947167.1 CDS RPA1822 NC_005296.1 2049434 2051500 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methyl-accepting chemotaxis receptor/sensory transducer 2049434..2051500 Rhodopseudomonas palustris CGA009 2692395 NP_947168.1 CDS RPA1823 NC_005296.1 2051982 2054615 D TonB dependent receptor 2051982..2054615 Rhodopseudomonas palustris CGA009 2691869 NP_947169.1 CDS RPA1824 NC_005296.1 2054711 2055226 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2054711..2055226 Rhodopseudomonas palustris CGA009 2690100 NP_947170.1 CDS RPA1825 NC_005296.1 2055318 2055557 R type IV pilus assembly PilZ complement(2055318..2055557) Rhodopseudomonas palustris CGA009 2690727 NP_947171.1 CDS RPA1826 NC_005296.1 2055690 2057048 R hypothetical protein complement(2055690..2057048) Rhodopseudomonas palustris CGA009 2689831 NP_947172.1 CDS RPA1827 NC_005296.1 2057154 2057414 R hypothetical protein complement(2057154..2057414) Rhodopseudomonas palustris CGA009 2691843 NP_947173.1 CDS RPA1828 NC_005296.1 2057481 2058131 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; peptidase C15 pyroglutamyl peptidase I complement(2057481..2058131) Rhodopseudomonas palustris CGA009 2689939 NP_947174.1 CDS argK NC_005296.1 2058128 2059117 R functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase complement(2058128..2059117) Rhodopseudomonas palustris CGA009 2690012 NP_947175.1 CDS RPA1830 NC_005296.1 2059204 2059533 R hypothetical protein complement(2059204..2059533) Rhodopseudomonas palustris CGA009 2690199 NP_947176.1 CDS RPA1831 NC_005296.1 2059524 2059796 R hypothetical protein complement(2059524..2059796) Rhodopseudomonas palustris CGA009 2692282 NP_947177.1 CDS RPA1832 NC_005296.1 2059995 2060753 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2059995..2060753) Rhodopseudomonas palustris CGA009 2692281 NP_947178.1 CDS RPA1833 NC_005296.1 2060841 2061242 R twitching motility protein PilT complement(2060841..2061242) Rhodopseudomonas palustris CGA009 2692267 NP_947179.1 CDS RPA1834 NC_005296.1 2061248 2061505 R hypothetical protein complement(2061248..2061505) Rhodopseudomonas palustris CGA009 2690716 NP_947180.1 CDS mutB NC_005296.1 2061569 2063728 R MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase complement(2061569..2063728) Rhodopseudomonas palustris CGA009 2692235 NP_947181.1 CDS RPA1836 NC_005296.1 2063791 2064255 R glutathione-dependent formaldehyde-activating protein complement(2063791..2064255) Rhodopseudomonas palustris CGA009 2690712 NP_947182.1 CDS RPA1837 NC_005296.1 2064252 2066123 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methylmalonyl-CoA mutase complement(2064252..2066123) Rhodopseudomonas palustris CGA009 2692221 NP_947183.1 CDS folK NC_005296.1 2066281 2066772 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(2066281..2066772) Rhodopseudomonas palustris CGA009 2692201 NP_947184.1 CDS folB NC_005296.1 2066774 2067139 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; dihydroneopterin aldolase complement(2066774..2067139) Rhodopseudomonas palustris CGA009 2692197 NP_947185.1 CDS folP NC_005296.1 2067136 2067993 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; dihydropteroate synthase complement(2067136..2067993) Rhodopseudomonas palustris CGA009 2692184 NP_947186.1 CDS RPA1841 NC_005296.1 2068059 2068466 R hypothetical protein complement(2068059..2068466) Rhodopseudomonas palustris CGA009 2690665 NP_947187.1 CDS RPA1842 NC_005296.1 2068484 2068852 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2068484..2068852) Rhodopseudomonas palustris CGA009 2690649 NP_947188.1 CDS RPA1843 NC_005296.1 2069189 2070799 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2069189..2070799 Rhodopseudomonas palustris CGA009 2692156 NP_947189.1 CDS RPA1844 NC_005296.1 2071008 2072414 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2071008..2072414 Rhodopseudomonas palustris CGA009 2690632 NP_947190.1 CDS RPA1845 NC_005296.1 2072749 2075049 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; tonB-dependent receptor protein 2072749..2075049 Rhodopseudomonas palustris CGA009 2690620 NP_947191.1 CDS RPA1846 NC_005296.1 2075163 2075897 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2075163..2075897 Rhodopseudomonas palustris CGA009 2690177 NP_947192.1 CDS RPA1847 NC_005296.1 2075894 2076175 D hypothetical protein 2075894..2076175 Rhodopseudomonas palustris CGA009 2692131 NP_947193.1 CDS RPA1848 NC_005296.1 2076237 2077811 D hypothetical protein 2076237..2077811 Rhodopseudomonas palustris CGA009 2692129 NP_947194.1 CDS RPA1849 NC_005296.1 2077808 2078095 D hypothetical protein 2077808..2078095 Rhodopseudomonas palustris CGA009 2690549 NP_947195.1 CDS RPA1850 NC_005296.1 2078135 2080132 R methyl-accepting chemotaxis receptor/sensory transducer complement(2078135..2080132) Rhodopseudomonas palustris CGA009 2690283 NP_947196.1 CDS RPA1851 NC_005296.1 2080588 2081661 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; aldolase II superfamily protein complement(2080588..2081661) Rhodopseudomonas palustris CGA009 2692057 NP_947197.1 CDS mucR NC_005296.1 2082702 2083118 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; MucR family transcriptional regulator 2082702..2083118 Rhodopseudomonas palustris CGA009 2692049 NP_947198.1 CDS RPA1853 NC_005296.1 2083126 2083866 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; short-chain dehydrogenase complement(2083126..2083866) Rhodopseudomonas palustris CGA009 2692023 NP_947199.1 CDS RPA1854 NC_005296.1 2083944 2084579 D TetR family transcriptional regulator 2083944..2084579 Rhodopseudomonas palustris CGA009 2690506 NP_947200.1 CDS RPA1855 NC_005296.1 2084701 2085312 D hypothetical protein 2084701..2085312 Rhodopseudomonas palustris CGA009 2690492 NP_947201.1 CDS RPA1856 NC_005296.1 2085342 2085770 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Fe-S metabolism associated SufE complement(2085342..2085770) Rhodopseudomonas palustris CGA009 2690478 NP_947202.1 CDS RPA1857 NC_005296.1 2085886 2086308 R hypothetical protein complement(2085886..2086308) Rhodopseudomonas palustris CGA009 2690181 NP_947203.1 CDS RPA1858 NC_005296.1 2086715 2088547 D sensor histidine kinase 2086715..2088547 Rhodopseudomonas palustris CGA009 2690174 NP_947204.1 CDS RPA1859 NC_005296.1 2088540 2089325 D peptidoglycan-binding domain 1 2088540..2089325 Rhodopseudomonas palustris CGA009 2690452 NP_947205.1 CDS RPA1860 NC_005296.1 2089478 2089819 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2089478..2089819 Rhodopseudomonas palustris CGA009 2690443 NP_947206.1 CDS RPA1861 NC_005296.1 2089994 2090968 R hypothetical protein complement(2089994..2090968) Rhodopseudomonas palustris CGA009 2690411 NP_947207.1 CDS RPA1862 NC_005296.1 2091120 2092193 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; polysaccharide deacetylase complement(2091120..2092193) Rhodopseudomonas palustris CGA009 2690403 NP_947208.1 CDS RPA1863 NC_005296.1 2092273 2092803 R hypothetical protein complement(2092273..2092803) Rhodopseudomonas palustris CGA009 2691996 NP_947209.1 CDS RPA1864 NC_005296.1 2093201 2093983 D hypothetical protein 2093201..2093983 Rhodopseudomonas palustris CGA009 2690372 NP_947210.1 CDS RPA1865 NC_005296.1 2093990 2094556 R hypothetical protein complement(2093990..2094556) Rhodopseudomonas palustris CGA009 2691432 NP_947211.1 CDS RPA1866 NC_005296.1 2094553 2095131 R hypothetical protein complement(2094553..2095131) Rhodopseudomonas palustris CGA009 2691967 NP_947212.1 CDS RPA1867 NC_005296.1 2095175 2097448 R penicillin-binding protein 1A complement(2095175..2097448) Rhodopseudomonas palustris CGA009 2691309 NP_947213.1 CDS RPA1868 NC_005296.1 2097623 2098231 D hypothetical protein 2097623..2098231 Rhodopseudomonas palustris CGA009 2691500 NP_947214.1 CDS RPA1869 NC_005296.1 2098286 2099029 D hypothetical protein 2098286..2099029 Rhodopseudomonas palustris CGA009 2691924 NP_947215.1 CDS RPA1870 NC_005296.1 2099324 2099839 R MarR family transcriptional regulator complement(2099324..2099839) Rhodopseudomonas palustris CGA009 2691522 NP_947216.1 CDS RPA1871 NC_005296.1 2099919 2101157 D cytochrome P450 2099919..2101157 Rhodopseudomonas palustris CGA009 2691582 NP_947217.1 CDS thcC NC_005296.1 2101167 2101487 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; rhodocoxin 2101167..2101487 Rhodopseudomonas palustris CGA009 2691589 NP_947218.1 CDS RPA1873 NC_005296.1 2101563 2102777 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter urea/short-chain binding protein 2101563..2102777 Rhodopseudomonas palustris CGA009 2691336 NP_947219.1 CDS RPA1874 NC_005296.1 2102977 2103183 R hypothetical protein complement(2102977..2103183) Rhodopseudomonas palustris CGA009 2688745 NP_947220.1 CDS RPA1875 NC_005296.1 2103180 2104325 R hypothetical protein complement(2103180..2104325) Rhodopseudomonas palustris CGA009 2688835 NP_947221.1 CDS RPA1876 NC_005296.1 2104322 2106625 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; TonB-dependent iron siderophore receptor complement(2104322..2106625) Rhodopseudomonas palustris CGA009 2691399 NP_947222.1 CDS RPA1877 NC_005296.1 2107191 2108096 D hypothetical protein 2107191..2108096 Rhodopseudomonas palustris CGA009 2691454 NP_947223.1 CDS RPA1878 NC_005296.1 2108394 2109569 R 6-aminohexanoate-dimer hydrolase complement(2108394..2109569) Rhodopseudomonas palustris CGA009 2691278 NP_947224.1 CDS RPA1879 NC_005296.1 2109685 2110752 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; choloylglycine hydrolase complement(2109685..2110752) Rhodopseudomonas palustris CGA009 2688804 NP_947225.1 CDS RPA1880 NC_005296.1 2110908 2112551 D MFS family transporter 2110908..2112551 Rhodopseudomonas palustris CGA009 2688822 NP_947226.1 CDS RPA1881 NC_005296.1 2112675 2114075 D hypothetical protein 2112675..2114075 Rhodopseudomonas palustris CGA009 2689049 NP_947227.1 CDS RPA1882 NC_005296.1 2114160 2114351 D Flp/Fap pilin protein 2114160..2114351 Rhodopseudomonas palustris CGA009 2691568 NP_947228.1 CDS RPA1883 NC_005296.1 2114647 2116200 D hypothetical protein 2114647..2116200 Rhodopseudomonas palustris CGA009 2691509 NP_947229.1 CDS RPA1884 NC_005296.1 2116794 2118473 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methyl-accepting chemotaxis receptor/sensory transducer 2116794..2118473 Rhodopseudomonas palustris CGA009 2691284 NP_947230.2 CDS RPA1885 NC_005296.1 2118613 2119788 D portal protein 2118613..2119788 Rhodopseudomonas palustris CGA009 2691616 NP_947231.1 CDS RPA1886 NC_005296.1 2119814 2120014 D hypothetical protein 2119814..2120014 Rhodopseudomonas palustris CGA009 2691630 NP_947232.1 CDS RPA1887 NC_005296.1 2120319 2120996 D phage protease 2120319..2120996 Rhodopseudomonas palustris CGA009 2691357 NP_947233.1 CDS RPA1888 NC_005296.1 2121168 2122421 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; major capsid protein 2121168..2122421 Rhodopseudomonas palustris CGA009 2691271 NP_947234.1 CDS RPA1889 NC_005296.1 2122753 2123124 D hypothetical protein 2122753..2123124 Rhodopseudomonas palustris CGA009 2691545 NP_947235.1 CDS RPA1890 NC_005296.1 2123340 2126441 R hypothetical protein complement(2123340..2126441) Rhodopseudomonas palustris CGA009 2691534 NP_947236.1 CDS RPA1891 NC_005296.1 2127296 2128252 D hypothetical protein 2127296..2128252 Rhodopseudomonas palustris CGA009 2691455 NP_947237.1 CDS RPA1892 NC_005296.1 2128329 2129489 D terminase GTA 2128329..2129489 Rhodopseudomonas palustris CGA009 2691457 NP_947238.1 CDS RPA1893 NC_005296.1 2129587 2129865 D hypothetical protein 2129587..2129865 Rhodopseudomonas palustris CGA009 2691444 NP_947239.1 CDS RPA1894 NC_005296.1 2129885 2130196 R hypothetical protein complement(2129885..2130196) Rhodopseudomonas palustris CGA009 2691463 NP_947240.1 CDS RPA1895 NC_005296.1 2130278 2130982 R peptidase S1 and S6 chymotrypsin/Hap complement(2130278..2130982) Rhodopseudomonas palustris CGA009 2691268 NP_947241.1 CDS GTA NC_005296.1 2131110 2131670 D hypothetical protein 2131110..2131670 Rhodopseudomonas palustris CGA009 2688834 NP_947242.1 CDS GTA NC_005296.1 2131667 2131987 D hypothetical protein 2131667..2131987 Rhodopseudomonas palustris CGA009 2691300 NP_947243.1 CDS GTA NC_005296.1 2131984 2132394 D hypothetical protein 2131984..2132394 Rhodopseudomonas palustris CGA009 2688924 NP_947244.1 CDS GTA NC_005296.1 2132407 2132814 D hypothetical protein 2132407..2132814 Rhodopseudomonas palustris CGA009 2688868 NP_947245.2 CDS GTA NC_005296.1 2132824 2133326 D hypothetical protein join(2132824..2133138,2133135..2133326) Rhodopseudomonas palustris CGA009 2691384 NP_947247.1 CDS GTA NC_005296.1 2133338 2133931 D hypothetical protein 2133338..2133931 Rhodopseudomonas palustris CGA009 2691609 NP_947248.1 CDS GTA NC_005296.1 2134093 2134731 D hypothetical protein 2134093..2134731 Rhodopseudomonas palustris CGA009 2691607 NP_947249.1 CDS RPA1904 NC_005296.1 2134844 2136670 D hypothetical protein 2134844..2136670 Rhodopseudomonas palustris CGA009 2689157 NP_947250.1 CDS GTA NC_005296.1 2136963 2137874 D hypothetical protein 2136963..2137874 Rhodopseudomonas palustris CGA009 2688955 NP_947251.1 CDS GTA NC_005296.1 2137914 2138366 D hypothetical protein 2137914..2138366 Rhodopseudomonas palustris CGA009 2691602 NP_947252.1 CDS RPA1907 NC_005296.1 2138431 2138856 D hypothetical protein 2138431..2138856 Rhodopseudomonas palustris CGA009 2688992 NP_947253.1 CDS RPA1908 NC_005296.1 2138895 2139362 R hypothetical protein complement(2138895..2139362) Rhodopseudomonas palustris CGA009 2691352 NP_947254.1 CDS RPA1909 NC_005296.1 2139516 2139989 D MarR family transcriptional regulator 2139516..2139989 Rhodopseudomonas palustris CGA009 2689122 NP_947255.1 CDS RPA1910 NC_005296.1 2139991 2140443 D hypothetical protein 2139991..2140443 Rhodopseudomonas palustris CGA009 2691599 NP_947256.1 CDS RPA1911 NC_005296.1 2140469 2141014 D nickel-dependent hydrogenase b-type cytochrome subunit 2140469..2141014 Rhodopseudomonas palustris CGA009 2691627 NP_947257.1 CDS RPA1912 NC_005296.1 2141169 2145041 D hypothetical protein 2141169..2145041 Rhodopseudomonas palustris CGA009 2688987 NP_947258.1 CDS RPA1913 NC_005296.1 2145051 2146418 D hypothetical protein 2145051..2146418 Rhodopseudomonas palustris CGA009 2688733 NP_947259.1 CDS RPA1914 NC_005296.1 2146542 2147303 D glycohydrolase 2146542..2147303 Rhodopseudomonas palustris CGA009 2688903 NP_947260.1 CDS feuP NC_005296.1 2147990 2148664 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; two-component transcriptional regulator FeuP 2147990..2148664 Rhodopseudomonas palustris CGA009 2691293 NP_947261.1 CDS feuQ NC_005296.1 2148680 2150071 D periplasmic sensor signal transduction histidine kinase 2148680..2150071 Rhodopseudomonas palustris CGA009 2688882 NP_947262.1 CDS lipA1 NC_005296.1 2150168 2150632 D LipA a lipoprotein 2150168..2150632 Rhodopseudomonas palustris CGA009 2691337 NP_947263.1 CDS RPA1918 NC_005296.1 2150801 2152258 D hypothetical protein 2150801..2152258 Rhodopseudomonas palustris CGA009 2691272 NP_947264.1 CDS cycH NC_005296.1 2152421 2153527 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cytochrome c-type biogenesis protein cycH 2152421..2153527 Rhodopseudomonas palustris CGA009 2688896 NP_947265.1 CDS cycJ NC_005296.1 2153641 2154144 D CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 2153641..2154144 Rhodopseudomonas palustris CGA009 2688890 NP_947266.1 CDS cycK NC_005296.1 2154141 2156123 D cytochrome c-type biogenesis protein CcmF 2154141..2156123 Rhodopseudomonas palustris CGA009 2688800 NP_947267.1 CDS cycL NC_005296.1 2156125 2156634 D cytochrome C biogenesis protein 2156125..2156634 Rhodopseudomonas palustris CGA009 2691601 NP_947268.1 CDS amiF NC_005296.1 2156945 2157967 R formamide amidohydrolase; catalyzes the hydrolysis of formamide to formate; formamidase complement(2156945..2157967) Rhodopseudomonas palustris CGA009 2691329 NP_947269.1 CDS RPA1924 NC_005296.1 2158087 2158764 R cobalamin synthesis protein/P47K complement(2158087..2158764) Rhodopseudomonas palustris CGA009 2691320 NP_947270.1 CDS RPA1925 NC_005296.1 2159007 2160473 R transmembrane protein complement(2159007..2160473) Rhodopseudomonas palustris CGA009 2691495 NP_947271.1 CDS RPA1926 NC_005296.1 2160548 2161399 D XRE family transcriptional regulator 2160548..2161399 Rhodopseudomonas palustris CGA009 2688949 NP_947272.1 CDS RPA1927 NC_005296.1 2161591 2162175 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2161591..2162175) Rhodopseudomonas palustris CGA009 2688901 NP_947273.1 CDS RPA1928 NC_005296.1 2162133 2163041 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ferredoxin complement(2162133..2163041) Rhodopseudomonas palustris CGA009 2691324 NP_947274.1 CDS RPA1929 NC_005296.1 2163410 2164981 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; htrA-like serine protease 2163410..2164981 Rhodopseudomonas palustris CGA009 2688967 NP_947275.1 CDS RPA1930 NC_005296.1 2165214 2165939 D two-component transcriptional regulator 2165214..2165939 Rhodopseudomonas palustris CGA009 2688838 NP_947276.1 CDS RPA1931 NC_005296.1 2166162 2167460 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methyl-accepting chemotaxis receptor/sensory transducer 2166162..2167460 Rhodopseudomonas palustris CGA009 2688881 NP_947277.1 CDS RPA1932 NC_005296.1 2167673 2169121 D periplasmic sensor signal transduction histidine kinase 2167673..2169121 Rhodopseudomonas palustris CGA009 2688805 NP_947278.1 CDS glnE NC_005296.1 2169118 2172090 D catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 2169118..2172090 Rhodopseudomonas palustris CGA009 2688911 NP_947279.1 CDS RPA1934 NC_005296.1 2172149 2172400 R hypothetical protein complement(2172149..2172400) Rhodopseudomonas palustris CGA009 2688986 NP_947280.1 CDS RPA1935 NC_005296.1 2172501 2173523 R AraC family transcriptional regulator complement(2172501..2173523) Rhodopseudomonas palustris CGA009 2691413 NP_947281.1 CDS RPA1936 NC_005296.1 2173925 2177401 D serine protease/outer membrane autotransporter 2173925..2177401 Rhodopseudomonas palustris CGA009 2691327 NP_947282.1 CDS RPA1937 NC_005296.1 2177757 2178716 D transposase 2177757..2178716 Rhodopseudomonas palustris CGA009 2689131 NP_947283.1 CDS RPA1938 NC_005296.1 2178903 2181242 R sensor histidine kinase pleC complement(2178903..2181242) Rhodopseudomonas palustris CGA009 2688908 NP_947284.1 CDS RPA1939 NC_005296.1 2181428 2182810 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cation diffusion facilitator family transporter complement(2181428..2182810) Rhodopseudomonas palustris CGA009 2691297 NP_947285.1 CDS RPA1940 NC_005296.1 2182941 2183909 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; quinone oxidoreductase complement(2182941..2183909) Rhodopseudomonas palustris CGA009 2691469 NP_947286.1 CDS RPA1941 NC_005296.1 2183952 2184950 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 2-nitropropane dioxygenase complement(2183952..2184950) Rhodopseudomonas palustris CGA009 2691549 NP_947287.1 CDS RPA1942 NC_005296.1 2185188 2185973 R 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase complement(2185188..2185973) Rhodopseudomonas palustris CGA009 2691477 NP_947288.1 CDS panE NC_005296.1 2186129 2187121 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(2186129..2187121) Rhodopseudomonas palustris CGA009 2691453 NP_947289.1 CDS oxlT NC_005296.1 2187210 2188550 R oxalate/formate antiporter complement(2187210..2188550) Rhodopseudomonas palustris CGA009 2691535 NP_947290.1 CDS RPA1945 NC_005296.1 2188671 2189996 R catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA; formyl-coenzyme A transferase complement(2188671..2189996) Rhodopseudomonas palustris CGA009 2688995 NP_947291.1 CDS RPA1946 NC_005296.1 2190065 2191039 R GntR family transcriptional regulator complement(2190065..2191039) Rhodopseudomonas palustris CGA009 2689121 NP_947292.1 CDS pqqB NC_005296.1 2191349 2192275 D possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB 2191349..2192275 Rhodopseudomonas palustris CGA009 2691631 NP_947293.1 CDS pqqC NC_005296.1 2192272 2193036 D Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC 2192272..2193036 Rhodopseudomonas palustris CGA009 2688798 NP_947294.1 CDS pqqD NC_005296.1 2193041 2193349 D coenzyme PQQ synthesis D 2193041..2193349 Rhodopseudomonas palustris CGA009 2691638 NP_947295.1 CDS pqqE NC_005296.1 2193391 2194524 D pyrroloquinoline quinone biosynthesis protein PqqE 2193391..2194524 Rhodopseudomonas palustris CGA009 2691285 NP_947296.1 CDS RPA1951 NC_005296.1 2194774 2195664 R FusE-MFP/HlyD family membrane protein complement(2194774..2195664) Rhodopseudomonas palustris CGA009 2691501 NP_947297.1 CDS RPA1952 NC_005296.1 2195661 2195870 R hypothetical protein complement(2195661..2195870) Rhodopseudomonas palustris CGA009 2691405 NP_947298.1 CDS RPA1953 NC_005296.1 2195870 2197882 R FusB/FusC fusaric acid resistance pump complement(2195870..2197882) Rhodopseudomonas palustris CGA009 2691517 NP_947299.1 CDS RPA1954 NC_005296.1 2198048 2198734 D TetR family transcriptional regulator 2198048..2198734 Rhodopseudomonas palustris CGA009 2691514 NP_947300.1 CDS RPA1955 NC_005296.1 2198871 2199980 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glutathione dependent formaldehyde dehydrogenase complement(2198871..2199980) Rhodopseudomonas palustris CGA009 2691289 NP_947301.1 CDS RPA1956 NC_005296.1 2200078 2201601 R ATPase complement(2200078..2201601) Rhodopseudomonas palustris CGA009 2691424 NP_947302.1 CDS RPA1957 NC_005296.1 2201728 2202744 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; alkanal monooxygenase complement(2201728..2202744) Rhodopseudomonas palustris CGA009 2691433 NP_947303.1 CDS RPA1958 NC_005296.1 2202856 2203479 R TetR family transcriptional regulator complement(2202856..2203479) Rhodopseudomonas palustris CGA009 2691539 NP_947304.1 CDS RPA1959 NC_005296.1 2203559 2204647 D RND efflux membrane protein 2203559..2204647 Rhodopseudomonas palustris CGA009 2691274 NP_947305.1 CDS RPA1960 NC_005296.1 2204644 2205717 D RND efflux membrane protein 2204644..2205717 Rhodopseudomonas palustris CGA009 2688754 NP_947306.1 CDS RPA1961 NC_005296.1 2205714 2208764 D RND efflux transporter 2205714..2208764 Rhodopseudomonas palustris CGA009 2688944 NP_947307.1 CDS RPA1962 NC_005296.1 2208766 2209047 D hypothetical protein 2208766..2209047 Rhodopseudomonas palustris CGA009 2688821 NP_947308.1 CDS RPA1963 NC_005296.1 2209076 2210269 D patatin-like phospholipase domain-containing protein 2209076..2210269 Rhodopseudomonas palustris CGA009 2691492 NP_947309.1 CDS RPA1964 NC_005296.1 2210328 2210885 D hypothetical protein 2210328..2210885 Rhodopseudomonas palustris CGA009 2691577 NP_947310.1 CDS RPA1965 NC_005296.1 2210911 2212899 R adenylate/guanylate cyclase complement(2210911..2212899) Rhodopseudomonas palustris CGA009 2689017 NP_947311.1 CDS RPA1966 NC_005296.1 2213166 2213798 R TetR family transcriptional regulator complement(2213166..2213798) Rhodopseudomonas palustris CGA009 2691915 NP_947312.1 CDS RPA1967 NC_005296.1 2213962 2215077 D component of multidrug efflux system 2213962..2215077 Rhodopseudomonas palustris CGA009 2688840 NP_947313.1 CDS RPA1968 NC_005296.1 2215077 2218232 D RND efflux transporter 2215077..2218232 Rhodopseudomonas palustris CGA009 2688985 NP_947314.1 CDS yjbN NC_005296.1 2218343 2219338 D tRNA-dihydrouridine synthase A 2218343..2219338 Rhodopseudomonas palustris CGA009 2691585 NP_947315.1 CDS RPA1970 NC_005296.1 2219352 2219888 R hypothetical protein complement(2219352..2219888) Rhodopseudomonas palustris CGA009 2691435 NP_947316.1 CDS RPA1971 NC_005296.1 2219911 2220183 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2219911..2220183) Rhodopseudomonas palustris CGA009 2690228 NP_947317.1 CDS RPA1972 NC_005296.1 2220180 2221778 R sensor signal transduction histidine kinase complement(2220180..2221778) Rhodopseudomonas palustris CGA009 2691995 NP_947318.1 CDS RPA1973 NC_005296.1 2221944 2222813 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 3-hydroxyisobutyrate dehydrogenase complement(2221944..2222813) Rhodopseudomonas palustris CGA009 2690385 NP_947319.1 CDS RPA1974 NC_005296.1 2223122 2224234 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ATP/GTP-binding-like protein 2223122..2224234 Rhodopseudomonas palustris CGA009 2690413 NP_947320.1 CDS RPA1975 NC_005296.1 2224485 2225576 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; twin-arginine translocation pathway signal 2224485..2225576 Rhodopseudomonas palustris CGA009 2690438 NP_947321.1 CDS RPA1976 NC_005296.1 2225766 2227607 R TRAP dicarboxylate family transporter subunit DctM complement(2225766..2227607) Rhodopseudomonas palustris CGA009 2690456 NP_947322.1 CDS RPA1977 NC_005296.1 2227645 2228241 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; TRAP dicarboxylate family transporter subunit DctQ complement(2227645..2228241) Rhodopseudomonas palustris CGA009 2691866 NP_947323.1 CDS moaA NC_005296.1 2228415 2229449 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(2228415..2229449) Rhodopseudomonas palustris CGA009 2690480 NP_947324.1 CDS RPA1979 NC_005296.1 2229556 2230005 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2229556..2230005) Rhodopseudomonas palustris CGA009 2690483 NP_947325.1 CDS cbbZ NC_005296.1 2230169 2230846 R catalyzes the formation of glycolate and phosphate from 2-phosphoglycolate; phosphoglycolate phosphatase complement(2230169..2230846) Rhodopseudomonas palustris CGA009 2690498 NP_947326.1 CDS cbbI NC_005296.1 2230997 2231695 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 2230997..2231695 Rhodopseudomonas palustris CGA009 2690294 NP_947327.1 CDS RPA1982 NC_005296.1 2231692 2232231 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2231692..2232231 Rhodopseudomonas palustris CGA009 2692028 NP_947328.1 CDS gor NC_005296.1 2232249 2233634 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glutathione reductase 2232249..2233634 Rhodopseudomonas palustris CGA009 2692061 NP_947329.1 CDS aroG2 NC_005296.1 2233823 2235211 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; phospho-2-dehydro-3-deoxyheptonate aldolase 2233823..2235211 Rhodopseudomonas palustris CGA009 2690026 NP_947330.1 CDS RPA1985 NC_005296.1 2235342 2235695 D diacylglycerol kinase 2235342..2235695 Rhodopseudomonas palustris CGA009 2690536 NP_947331.1 CDS nadE NC_005296.1 2235739 2237493 D NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 2235739..2237493 Rhodopseudomonas palustris CGA009 2690132 NP_947332.1 CDS RPA1987 NC_005296.1 2237747 2238076 R hypothetical protein complement(2237747..2238076) Rhodopseudomonas palustris CGA009 2692101 NP_947333.1 CDS RPA1988 NC_005296.1 2238302 2239309 R AraC family transcriptional regulator complement(2238302..2239309) Rhodopseudomonas palustris CGA009 2692124 NP_947334.1 CDS RPA1989 NC_005296.1 2239874 2240200 D hypothetical protein 2239874..2240200 Rhodopseudomonas palustris CGA009 2692127 NP_947335.1 CDS RPA1990 NC_005296.1 2240367 2242157 D sulfatase 2240367..2242157 Rhodopseudomonas palustris CGA009 2690587 NP_947336.1 CDS RPA1991 NC_005296.1 2242169 2243230 D hypothetical protein 2242169..2243230 Rhodopseudomonas palustris CGA009 2690606 NP_947337.1 CDS RPA1992 NC_005296.1 2243485 2243895 R NtrR protein complement(2243485..2243895) Rhodopseudomonas palustris CGA009 2689890 NP_947338.1 CDS RPA1993 NC_005296.1 2243892 2244155 R virulence-associated protein complement(2243892..2244155) Rhodopseudomonas palustris CGA009 2692148 NP_947339.1 CDS RPA1994 NC_005296.1 2244336 2244761 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2244336..2244761 Rhodopseudomonas palustris CGA009 2690628 NP_947340.1 CDS RPA1995 NC_005296.1 2244858 2246027 R hypothetical protein complement(2244858..2246027) Rhodopseudomonas palustris CGA009 2690653 NP_947341.1 CDS RPA1996 NC_005296.1 2246213 2246521 R hypothetical protein complement(2246213..2246521) Rhodopseudomonas palustris CGA009 2690028 NP_947342.1 CDS cysS NC_005296.1 2246922 2248313 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2246922..2248313 Rhodopseudomonas palustris CGA009 2692191 NP_947343.1 CDS RPA1998 NC_005296.1 2248843 2248974 D hypothetical protein 2248843..2248974 Rhodopseudomonas palustris CGA009 2692202 NP_947344.1 CDS RPA1999 NC_005296.1 2248971 2249474 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; N-acetyltransferase GCN5 2248971..2249474 Rhodopseudomonas palustris CGA009 2690683 NP_947345.1 CDS leuA NC_005296.1 2249471 2251069 D catalyzes the formation of 2-isopropylmalate from 1-methyl-2-oxobutanoate and acetyl-CoA; alpha-isopropylmalate/homocitrate synthase family transferase 2249471..2251069 Rhodopseudomonas palustris CGA009 2692250 NP_947346.1 CDS RPA2001 NC_005296.1 2251263 2252807 D thiamine-pyrophosphate requiring enzyme; hypothetical protein 2251263..2252807 Rhodopseudomonas palustris CGA009 2690718 NP_947347.1 CDS RPA2002 NC_005296.1 2252819 2254228 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; FAD linked oxidase 2252819..2254228 Rhodopseudomonas palustris CGA009 2691813 NP_947348.1 CDS RPA2003 NC_005296.1 2254253 2256322 R cytochrome c complement(2254253..2256322) Rhodopseudomonas palustris CGA009 2692278 NP_947349.1 CDS RPA2004 NC_005296.1 2256505 2257140 R hypothetical protein complement(2256505..2257140) Rhodopseudomonas palustris CGA009 2690204 NP_947350.1 CDS RPA2005 NC_005296.1 2257299 2259254 D multidrug ABC transporter 2257299..2259254 Rhodopseudomonas palustris CGA009 2690013 NP_947351.2 CDS psd NC_005296.1 2259303 2260001 D catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 2259303..2260001 Rhodopseudomonas palustris CGA009 2692337 NP_947352.1 CDS pssA NC_005296.1 2260031 2260945 D CDP-diacylglycerol--serine O-phosphatidyltransferase 2260031..2260945 Rhodopseudomonas palustris CGA009 2690729 NP_947353.1 CDS RPA2008 NC_005296.1 2261081 2261800 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2261081..2261800 Rhodopseudomonas palustris CGA009 2692362 NP_947354.1 CDS RPA2009 NC_005296.1 2262032 2262805 D MotA/TolQ/ExbB proton channel 2262032..2262805 Rhodopseudomonas palustris CGA009 2692379 NP_947355.1 CDS motB1 NC_005296.1 2262836 2263660 D chemotaxis protein motB1 2262836..2263660 Rhodopseudomonas palustris CGA009 2692405 NP_947356.1 CDS RPA2011 NC_005296.1 2263810 2265765 D potassium uptake protein Kup 2263810..2265765 Rhodopseudomonas palustris CGA009 2690749 NP_947357.1 CDS RPA2012 NC_005296.1 2265975 2266301 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; rhodanese-like protein 2265975..2266301 Rhodopseudomonas palustris CGA009 2692432 NP_947358.1 CDS RPA2013 NC_005296.1 2266324 2267481 D hypothetical protein 2266324..2267481 Rhodopseudomonas palustris CGA009 2690760 NP_947359.1 CDS RPA2014 NC_005296.1 2267489 2268604 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; family 1 extracellular solute-binding protein 2267489..2268604 Rhodopseudomonas palustris CGA009 2692441 NP_947360.1 CDS RPA2015 NC_005296.1 2268717 2269856 D hypothetical protein 2268717..2269856 Rhodopseudomonas palustris CGA009 2690789 NP_947361.1 CDS RPA2016 NC_005296.1 2269872 2271830 R methyltransferase-like protein complement(2269872..2271830) Rhodopseudomonas palustris CGA009 2692473 NP_947362.1 CDS RPA2017 NC_005296.1 2272117 2273049 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(2272117..2273049) Rhodopseudomonas palustris CGA009 2692481 NP_947363.1 CDS RPA2018 NC_005296.1 2273049 2274071 R alcohol dehydrogenase complement(2273049..2274071) Rhodopseudomonas palustris CGA009 2692482 NP_947364.1 CDS RPA2019 NC_005296.1 2274168 2275448 R FabF, beta-Ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-ACP synthase complement(2274168..2275448) Rhodopseudomonas palustris CGA009 2690840 NP_947365.1 CDS RPA2020 NC_005296.1 2275459 2276667 R FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(2275459..2276667) Rhodopseudomonas palustris CGA009 2690848 NP_947366.1 CDS RPA2021 NC_005296.1 2276660 2277130 R beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ complement(2276660..2277130) Rhodopseudomonas palustris CGA009 2690110 NP_947367.1 CDS RPA2022 NC_005296.1 2277156 2277437 R Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; acyl carrier protein complement(2277156..2277437) Rhodopseudomonas palustris CGA009 2689370 NP_947368.1 CDS RPA2023 NC_005296.1 2277604 2277957 R hypothetical protein complement(2277604..2277957) Rhodopseudomonas palustris CGA009 2690122 NP_947369.1 CDS RPA2024 NC_005296.1 2278154 2278777 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2278154..2278777 Rhodopseudomonas palustris CGA009 2690895 NP_947370.1 CDS RPA2025 NC_005296.1 2278805 2279266 R Mg2+ transporter complement(2278805..2279266) Rhodopseudomonas palustris CGA009 2692502 NP_947371.1 CDS RPA2026 NC_005296.1 2279693 2282260 D ferric siderophore receptor 2279693..2282260 Rhodopseudomonas palustris CGA009 2690908 NP_947372.1 CDS RPA2027 NC_005296.1 2282020 2283771 R hypothetical protein complement(2282020..2283771) Rhodopseudomonas palustris CGA009 2692525 NP_947373.1 CDS RPA2028 NC_005296.1 2284104 2284685 D hypothetical protein 2284104..2284685 Rhodopseudomonas palustris CGA009 2690912 NP_947374.1 CDS serB NC_005296.1 2284710 2285441 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; phosphoserine phosphatase complement(2284710..2285441) Rhodopseudomonas palustris CGA009 2692557 NP_947375.1 CDS miaA NC_005296.1 2285587 2286552 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 2285587..2286552 Rhodopseudomonas palustris CGA009 2690931 NP_947376.1 CDS ilvI NC_005296.1 2286918 2288696 D catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; acetolactate synthase 3 catalytic subunit 2286918..2288696 Rhodopseudomonas palustris CGA009 2692596 NP_947377.1 CDS ilvH NC_005296.1 2288912 2289454 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2288912..2289454 Rhodopseudomonas palustris CGA009 2690948 NP_947378.1 CDS RPA2033 NC_005296.1 2289458 2289856 R AtsE complement(2289458..2289856) Rhodopseudomonas palustris CGA009 2690075 NP_947379.1 CDS RPA2034 NC_005296.1 2290068 2290943 D DMT family permease 2290068..2290943 Rhodopseudomonas palustris CGA009 2690950 NP_947380.1 CDS ilvC NC_005296.1 2291138 2292157 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 2291138..2292157 Rhodopseudomonas palustris CGA009 2692618 NP_947381.1 CDS RPA2036 NC_005296.1 2292447 2293175 D GntR family transcriptional regulator 2292447..2293175 Rhodopseudomonas palustris CGA009 2690979 NP_947382.1 CDS RPA2037 NC_005296.1 2293274 2294506 D periplasmic binding protein 2293274..2294506 Rhodopseudomonas palustris CGA009 2692644 NP_947383.1 CDS RPA2038 NC_005296.1 2294633 2295487 D short-chain dehydrogenase/reductase SDR 2294633..2295487 Rhodopseudomonas palustris CGA009 2692662 NP_947384.1 CDS RPA2039 NC_005296.1 2295590 2297137 R glycine betaine ABC transporter substrate-binding protein complement(2295590..2297137) Rhodopseudomonas palustris CGA009 2692669 NP_947385.1 CDS RPA2040 NC_005296.1 2297134 2297742 R choline ABC transporter ATP-binding subunit complement(2297134..2297742) Rhodopseudomonas palustris CGA009 2689919 NP_947386.1 CDS RPA2041 NC_005296.1 2297977 2298837 D ABC-transport protein ATP-binding protein 2297977..2298837 Rhodopseudomonas palustris CGA009 2690220 NP_947387.1 CDS RPA2042 NC_005296.1 2299064 2299858 D ABC transporter permease 2299064..2299858 Rhodopseudomonas palustris CGA009 2692680 NP_947388.1 CDS RPA2043 NC_005296.1 2299917 2300939 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter periplasmic substrate-binding protein 2299917..2300939 Rhodopseudomonas palustris CGA009 2692710 NP_947389.1 CDS RPA2044 NC_005296.1 2300947 2301663 D hypothetical protein 2300947..2301663 Rhodopseudomonas palustris CGA009 2692724 NP_947390.1 CDS bioB NC_005296.1 2301725 2302735 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; biotin synthase complement(2301725..2302735) Rhodopseudomonas palustris CGA009 2689033 NP_947391.1 CDS leuI NC_005296.1 2303251 2304825 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 2303251..2304825 Rhodopseudomonas palustris CGA009 2689030 NP_947392.1 CDS dctP1 NC_005296.1 2305049 2306053 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; TRAP dicarboxylate family transporter subunit DctP 2305049..2306053 Rhodopseudomonas palustris CGA009 2692752 NP_947393.1 CDS dctQ1 NC_005296.1 2306192 2306776 D TRAP dicarboxylate family transporter subunit DctQ 2306192..2306776 Rhodopseudomonas palustris CGA009 2692791 NP_947394.1 CDS dctM1 NC_005296.1 2306773 2308098 D TRAP dicarboxylate family transporter subunit DctM 2306773..2308098 Rhodopseudomonas palustris CGA009 2691116 NP_947395.1 CDS RPA2050 NC_005296.1 2308231 2308830 D hypothetical protein 2308231..2308830 Rhodopseudomonas palustris CGA009 2692826 NP_947396.1 CDS RPA2051 NC_005296.1 2309647 2312004 D ornithine decarboxylase 2309647..2312004 Rhodopseudomonas palustris CGA009 2691155 NP_947397.1 CDS RPA2052 NC_005296.1 2311958 2312569 D phophinothricin N-acetyltransferase 2311958..2312569 Rhodopseudomonas palustris CGA009 2692876 NP_947398.1 CDS RPA2053 NC_005296.1 2312691 2313050 D hypothetical protein 2312691..2313050 Rhodopseudomonas palustris CGA009 2692892 NP_947399.1 CDS RPA2054 NC_005296.1 2313105 2314376 D outer membrane protein CzcC 2313105..2314376 Rhodopseudomonas palustris CGA009 2691164 NP_947400.1 CDS RPA2055 NC_005296.1 2314373 2315368 D RND divalent metal cation efflux membrane fusion protein CzcB 2314373..2315368 Rhodopseudomonas palustris CGA009 2692923 NP_947401.1 CDS czcA2 NC_005296.1 2315398 2318613 D RND divalent metal cation efflux transporter CzcA 2315398..2318613 Rhodopseudomonas palustris CGA009 2691178 NP_947402.1 CDS RPA2057 NC_005296.1 2318610 2318978 D hypothetical protein 2318610..2318978 Rhodopseudomonas palustris CGA009 2691203 NP_947403.1 CDS RPA2058 NC_005296.1 2319039 2319308 R hypothetical protein complement(2319039..2319308) Rhodopseudomonas palustris CGA009 2690047 NP_947404.1 CDS RPA2059 NC_005296.1 2319382 2320281 R hypothetical protein complement(2319382..2320281) Rhodopseudomonas palustris CGA009 2690357 NP_947405.1 CDS nosR NC_005296.1 2320449 2322716 D regulatory protein NosR 2320449..2322716 Rhodopseudomonas palustris CGA009 2692990 NP_947406.1 CDS nosZ NC_005296.1 2322735 2324672 D reduces nitrous oxide to nitrogen; nitrous-oxide reductase 2322735..2324672 Rhodopseudomonas palustris CGA009 2693032 NP_947407.1 CDS nosD NC_005296.1 2324675 2326039 D periplasmic ABC transport copper binding protein 2324675..2326039 Rhodopseudomonas palustris CGA009 2693058 NP_947408.1 CDS nosF NC_005296.1 2326036 2326941 D NosF protein 2326036..2326941 Rhodopseudomonas palustris CGA009 2693080 NP_947409.1 CDS nosY NC_005296.1 2326938 2327765 D copper ABC transporter permease 2326938..2327765 Rhodopseudomonas palustris CGA009 2693084 NP_947410.1 CDS nosL NC_005296.1 2327762 2328313 D hypothetical protein 2327762..2328313 Rhodopseudomonas palustris CGA009 2689780 NP_947411.1 CDS nosX NC_005296.1 2328326 2329324 D nosX 2328326..2329324 Rhodopseudomonas palustris CGA009 2690350 NP_947412.1 CDS RPA2067 NC_005296.1 2329360 2329830 D hypothetical protein 2329360..2329830 Rhodopseudomonas palustris CGA009 2691241 NP_947413.1 CDS RPA2068 NC_005296.1 2329917 2330204 D hypothetical protein 2329917..2330204 Rhodopseudomonas palustris CGA009 2691680 NP_947414.1 CDS RPA2069 NC_005296.1 2330201 2331484 D hypothetical protein 2330201..2331484 Rhodopseudomonas palustris CGA009 2691706 NP_947415.1 CDS RPA2070 NC_005296.1 2331496 2332005 D hypothetical protein 2331496..2332005 Rhodopseudomonas palustris CGA009 2690337 NP_947416.1 CDS RPA2071 NC_005296.1 2332157 2332408 R hypothetical protein complement(2332157..2332408) Rhodopseudomonas palustris CGA009 2689389 NP_947417.1 CDS RPA2072 NC_005296.1 2332505 2332651 R 3-oxoacyl-ACP reductase complement(2332505..2332651) Rhodopseudomonas palustris CGA009 2691752 NP_947418.1 CDS RPA2073 NC_005296.1 2332713 2333363 R oxidoreductase complement(2332713..2333363) Rhodopseudomonas palustris CGA009 2691755 NP_947419.1 CDS RPA2074 NC_005296.1 2333431 2333799 R chemotaxis protein CheY complement(2333431..2333799) Rhodopseudomonas palustris CGA009 2691784 NP_947420.1 CDS RPA2075 NC_005296.1 2333796 2335697 R signal transduction histidine kinase complement(2333796..2335697) Rhodopseudomonas palustris CGA009 2691799 NP_947421.1 CDS RPA2076 NC_005296.1 2336125 2336811 R signal transduction histidine kinase complement(2336125..2336811) Rhodopseudomonas palustris CGA009 2689566 NP_947422.1 CDS RPA2077 NC_005296.1 2336808 2337734 R Crp/Fnr family transcriptional regulator complement(2336808..2337734) Rhodopseudomonas palustris CGA009 2691800 NP_947423.1 CDS RPA2078 NC_005296.1 2337879 2338001 D hypothetical protein 2337879..2338001 Rhodopseudomonas palustris CGA009 2691805 NP_947424.1 CDS RPA2079 NC_005296.1 2338189 2338308 D hypothetical protein 2338189..2338308 Rhodopseudomonas palustris CGA009 2691828 NP_947425.1 CDS RPA2080 NC_005296.1 2338535 2339704 R zinc-containing dehydrogenase complement(2338535..2339704) Rhodopseudomonas palustris CGA009 2689753 NP_947426.1 CDS RPA2081 NC_005296.1 2340151 2341086 D Fe ABC transporter 2340151..2341086 Rhodopseudomonas palustris CGA009 2689758 NP_947427.1 CDS cobA NC_005296.1 2341120 2341869 R catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1; uroporphyrin-III C-methyltransferase complement(2341120..2341869) Rhodopseudomonas palustris CGA009 2689993 NP_947428.1 CDS cobB NC_005296.1 2341869 2343230 R responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase complement(2341869..2343230) Rhodopseudomonas palustris CGA009 2689998 NP_947429.1 CDS cobM NC_005296.1 2343217 2343996 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; precorrin-4 C(11)-methyltransferase complement(2343217..2343996) Rhodopseudomonas palustris CGA009 2691844 NP_947430.1 CDS CbiG NC_005296.1 2343993 2344385 R cobalamin biosynthesis protein CbiG complement(2343993..2344385) Rhodopseudomonas palustris CGA009 2693493 NP_947431.1 CDS cobL NC_005296.1 2344382 2345605 R precorrin-6y C5,15-methyltransferase subunit CbiE complement(2344382..2345605) Rhodopseudomonas palustris CGA009 2693296 NP_947432.1 CDS cobK NC_005296.1 2345604 2346386 D CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 2345604..2346386 Rhodopseudomonas palustris CGA009 2693251 NP_947433.1 CDS cobJ NC_005296.1 2346353 2347114 R precorrin-3B C(17)-methyltransferase complement(2346353..2347114) Rhodopseudomonas palustris CGA009 2693210 NP_947434.1 CDS cobI NC_005296.1 2347111 2347839 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; precorrin-2 C(20)-methyltransferase complement(2347111..2347839) Rhodopseudomonas palustris CGA009 2693181 NP_947435.1 CDS cobH NC_005296.1 2347836 2348465 R catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; precorrin-8X methylmutase complement(2347836..2348465) Rhodopseudomonas palustris CGA009 2693151 NP_947436.1 CDS RPA2091 NC_005296.1 2348462 2349025 R hypothetical protein complement(2348462..2349025) Rhodopseudomonas palustris CGA009 2693159 NP_947437.1 CDS RPA2092 NC_005296.1 2349426 2350562 R citrate utilization protein B complement(2349426..2350562) Rhodopseudomonas palustris CGA009 2693359 NP_947438.1 CDS RPA2093 NC_005296.1 2350549 2351847 R catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase complement(2350549..2351847) Rhodopseudomonas palustris CGA009 2693329 NP_947439.1 CDS cobT1 NC_005296.1 2352419 2353483 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2352419..2353483 Rhodopseudomonas palustris CGA009 2693312 NP_947440.1 CDS RPA2095 NC_005296.1 2353480 2354250 D cobalamin (5`-phosphate) synthase 2353480..2354250 Rhodopseudomonas palustris CGA009 2693304 NP_947441.1 CDS cobQ2 NC_005296.1 2354337 2355911 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 2354337..2355911 Rhodopseudomonas palustris CGA009 2693214 NP_947442.1 CDS cobF NC_005296.1 2355943 2356707 D catalyzes the formation of precorrin 6x from precorrin 5; precorrin 6A synthase 2355943..2356707 Rhodopseudomonas palustris CGA009 2693204 NP_947443.1 CDS RPA2098 NC_005296.1 2356827 2357591 D glutamine amidotransferase 2356827..2357591 Rhodopseudomonas palustris CGA009 2693435 NP_947444.1 CDS RPA2099 NC_005296.1 2357596 2359245 R MFS family diterpenoid transporter complement(2357596..2359245) Rhodopseudomonas palustris CGA009 2693466 NP_947445.1 CDS RPA2100 NC_005296.1 2359573 2360223 D hydrolase 2359573..2360223 Rhodopseudomonas palustris CGA009 2693508 NP_947446.1 CDS RPA2101 NC_005296.1 2360535 2362415 D hypothetical protein 2360535..2362415 Rhodopseudomonas palustris CGA009 2693193 NP_947447.1 CDS RPA2102 NC_005296.1 2362417 2362842 D hypothetical protein 2362417..2362842 Rhodopseudomonas palustris CGA009 2693289 NP_947448.1 CDS RPA2103 NC_005296.1 2362862 2363782 D hypothetical protein 2362862..2363782 Rhodopseudomonas palustris CGA009 2693299 NP_947449.1 CDS RPA2104 NC_005296.1 2363779 2365212 D hypothetical protein 2363779..2365212 Rhodopseudomonas palustris CGA009 2693220 NP_947450.1 CDS RPA2105 NC_005296.1 2365285 2366127 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; non-heme chloroperoxidase complement(2365285..2366127) Rhodopseudomonas palustris CGA009 2693582 NP_947451.1 CDS RPA2106 NC_005296.1 2366342 2367043 R hypothetical protein complement(2366342..2367043) Rhodopseudomonas palustris CGA009 2693570 NP_947452.1 CDS RPA2107 NC_005296.1 2367208 2372346 R sensor histidine kinase complement(2367208..2372346) Rhodopseudomonas palustris CGA009 2693392 NP_947453.1 CDS RPA2108 NC_005296.1 2372333 2372719 R chemotaxis protein CheY complement(2372333..2372719) Rhodopseudomonas palustris CGA009 2693381 NP_947454.1 CDS RPA2109 NC_005296.1 2372808 2373443 R LuxR family transcriptional regulator complement(2372808..2373443) Rhodopseudomonas palustris CGA009 2693568 NP_947455.1 CDS RPA2110 NC_005296.1 2373680 2374288 D AraC family transcriptional regulator 2373680..2374288 Rhodopseudomonas palustris CGA009 2693609 NP_947456.1 CDS RPA2111 NC_005296.1 2374328 2376253 R sigma-54-dependent transcriptional regulator complement(2374328..2376253) Rhodopseudomonas palustris CGA009 2693465 NP_947457.1 CDS nrtA NC_005296.1 2376415 2377803 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; nitrate transporter component nrtA 2376415..2377803 Rhodopseudomonas palustris CGA009 2693458 NP_947458.1 CDS nrtB NC_005296.1 2377950 2378789 D nitrate transport system permease 2377950..2378789 Rhodopseudomonas palustris CGA009 2693456 NP_947459.1 CDS nrtC1 NC_005296.1 2378795 2379682 D nitrate transport system ATP-binding protein 2378795..2379682 Rhodopseudomonas palustris CGA009 2693514 NP_947460.1 CDS cynS NC_005296.1 2379725 2380213 D catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide; cyanate hydratase 2379725..2380213 Rhodopseudomonas palustris CGA009 2693495 NP_947461.1 CDS RPA2116 NC_005296.1 2380320 2380736 R hypothetical protein complement(2380320..2380736) Rhodopseudomonas palustris CGA009 2693492 NP_947462.1 CDS RPA2117 NC_005296.1 2380715 2381197 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA complement(2380715..2381197) Rhodopseudomonas palustris CGA009 2693490 NP_947463.1 CDS hmuV NC_005296.1 2381400 2382206 R with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit complement(2381400..2382206) Rhodopseudomonas palustris CGA009 2693487 NP_947464.1 CDS RPA2119 NC_005296.1 2382203 2383285 R transport system permease complement(2382203..2383285) Rhodopseudomonas palustris CGA009 2693536 NP_947465.1 CDS RPA2120 NC_005296.1 2383282 2384253 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; periplasmic binding protein complement(2383282..2384253) Rhodopseudomonas palustris CGA009 2693364 NP_947466.1 CDS RPA2121 NC_005296.1 2384250 2384453 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2384250..2384453) Rhodopseudomonas palustris CGA009 2693356 NP_947467.1 CDS RPA2122 NC_005296.1 2384786 2386246 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 2384786..2386246 Rhodopseudomonas palustris CGA009 2693353 NP_947468.1 CDS RPA2123 NC_005296.1 2386234 2386905 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2386234..2386905 Rhodopseudomonas palustris CGA009 2693354 NP_947469.1 CDS RPA2124 NC_005296.1 2387123 2389462 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; tonB dependent iron siderophore receptor 2387123..2389462 Rhodopseudomonas palustris CGA009 2693401 NP_947470.1 CDS RPA2125 NC_005296.1 2389539 2389871 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; antibiotic biosynthesis monooxygenase 2389539..2389871 Rhodopseudomonas palustris CGA009 2693560 NP_947471.1 CDS RPA2126 NC_005296.1 2389888 2390424 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2389888..2390424 Rhodopseudomonas palustris CGA009 2693309 NP_947472.1 CDS exbB3 NC_005296.1 2390417 2391214 D enterochelin uptake protein ExbB 2390417..2391214 Rhodopseudomonas palustris CGA009 2693311 NP_947473.1 CDS exbD3 NC_005296.1 2391220 2391657 D biopolymer transport protein ExbD/TolR 2391220..2391657 Rhodopseudomonas palustris CGA009 2693276 NP_947474.1 CDS RPA2129 NC_005296.1 2391654 2392511 D energy transducer TonB C-terminal region 2391654..2392511 Rhodopseudomonas palustris CGA009 2693346 NP_947475.1 CDS RPA2130 NC_005296.1 2393564 2394370 R hypothetical protein complement(2393564..2394370) Rhodopseudomonas palustris CGA009 2693352 NP_947476.1 CDS RPA2131 NC_005296.1 2394921 2396003 D hypothetical protein 2394921..2396003 Rhodopseudomonas palustris CGA009 2693533 NP_947477.1 CDS RPA2132 NC_005296.1 2396132 2397517 D hypothetical protein 2396132..2397517 Rhodopseudomonas palustris CGA009 2693449 NP_947478.1 CDS RPA2133 NC_005296.1 2397522 2398313 D hypothetical protein 2397522..2398313 Rhodopseudomonas palustris CGA009 2693454 NP_947479.1 CDS RPA2134 NC_005296.1 2398474 2398917 D hypothetical protein 2398474..2398917 Rhodopseudomonas palustris CGA009 2693363 NP_947480.1 CDS RPA2135 NC_005296.1 2398973 2401096 R sensor histidine kinase complement(2398973..2401096) Rhodopseudomonas palustris CGA009 2693350 NP_947481.1 CDS RPA2136 NC_005296.1 2401317 2401631 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cytochrome C 2401317..2401631 Rhodopseudomonas palustris CGA009 2693219 NP_947482.1 CDS RPA2137 NC_005296.1 2401734 2402873 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl-CoA dehydrogenase 2401734..2402873 Rhodopseudomonas palustris CGA009 2693509 NP_947483.1 CDS RPA2138 NC_005296.1 2403023 2404177 D acyl-CoA dehydrogenase 2403023..2404177 Rhodopseudomonas palustris CGA009 2693314 NP_947484.1 CDS RPA2139 NC_005296.1 2404371 2405069 D glutathione S-transferase 2404371..2405069 Rhodopseudomonas palustris CGA009 2693305 NP_947485.1 CDS RPA2140 NC_005296.1 2405234 2406058 D AraC family transcriptional regulator 2405234..2406058 Rhodopseudomonas palustris CGA009 2693297 NP_947486.1 CDS RPA2141 NC_005296.1 2406179 2407045 D hypothetical protein 2406179..2407045 Rhodopseudomonas palustris CGA009 2693451 NP_947487.1 CDS RPA2142 NC_005296.1 2407213 2408817 D fatty-acid--CoA ligase 2407213..2408817 Rhodopseudomonas palustris CGA009 2693583 NP_947488.1 CDS RPA2143 NC_005296.1 2409057 2410679 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; propionyl-CoA carboxylase 2409057..2410679 Rhodopseudomonas palustris CGA009 2693383 NP_947489.1 CDS RPA2144 NC_005296.1 2410676 2412658 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; carbamoyl-phosphate synthase L chain ATP-binding 2410676..2412658 Rhodopseudomonas palustris CGA009 2693282 NP_947490.1 CDS RPA2145 NC_005296.1 2412778 2413557 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2412778..2413557 Rhodopseudomonas palustris CGA009 2693330 NP_947491.1 CDS RPA2146 NC_005296.1 2413733 2415271 D long-chain-fatty-acid--CoA ligase 2413733..2415271 Rhodopseudomonas palustris CGA009 2693280 NP_947492.1 CDS RPA2147 NC_005296.1 2415426 2416820 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2415426..2416820 Rhodopseudomonas palustris CGA009 2693269 NP_947493.1 CDS RPA2148 NC_005296.1 2416916 2418184 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; beta-lactamase complement(2416916..2418184) Rhodopseudomonas palustris CGA009 2693371 NP_947494.1 CDS RPA2149 NC_005296.1 2418328 2419320 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hydroxyquinol 1,2-dioxygenase 2418328..2419320 Rhodopseudomonas palustris CGA009 2693366 NP_947495.1 CDS RPA2150 NC_005296.1 2419351 2420184 D oxidoreductase 2419351..2420184 Rhodopseudomonas palustris CGA009 2693467 NP_947496.1 CDS RPA2151 NC_005296.1 2420403 2421317 D DMT family permease 2420403..2421317 Rhodopseudomonas palustris CGA009 2693348 NP_947497.1 CDS RPA2152 NC_005296.1 2421412 2423541 D diguanylate cyclase/phosphodiesterase 2421412..2423541 Rhodopseudomonas palustris CGA009 2693153 NP_947498.1 CDS RPA2153 NC_005296.1 2423788 2425218 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; aldehyde dehydrogenase 2423788..2425218 Rhodopseudomonas palustris CGA009 2693525 NP_947499.1 CDS RPA2154 NC_005296.1 2425291 2426538 D acyltransferase 2425291..2426538 Rhodopseudomonas palustris CGA009 2693444 NP_947500.1 CDS ilvD3 NC_005296.1 2426865 2428571 D catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 2426865..2428571 Rhodopseudomonas palustris CGA009 2693377 NP_947501.1 CDS RPA2156 NC_005296.1 2428576 2428854 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2428576..2428854) Rhodopseudomonas palustris CGA009 2693284 NP_947502.1 CDS RPA2157 NC_005296.1 2429253 2430449 D hypothetical protein 2429253..2430449 Rhodopseudomonas palustris CGA009 2693157 NP_947503.1 CDS RPA2158 NC_005296.1 2430585 2430914 D hypothetical protein 2430585..2430914 Rhodopseudomonas palustris CGA009 2693313 NP_947504.1 CDS RPA2159 NC_005296.1 2431025 2431339 R hypothetical protein complement(2431025..2431339) Rhodopseudomonas palustris CGA009 2693294 NP_947505.1 CDS RPA2160 NC_005296.1 2431465 2432214 R short-chain dehydrogenase/reductase SDR complement(2431465..2432214) Rhodopseudomonas palustris CGA009 2693374 NP_947506.1 CDS RPA2161 NC_005296.1 2432327 2432641 D ArsR family transcriptional regulator 2432327..2432641 Rhodopseudomonas palustris CGA009 2693218 NP_947507.1 CDS RPA2162 NC_005296.1 2433296 2436136 D serine protease/outer membrane autotransporter 2433296..2436136 Rhodopseudomonas palustris CGA009 2693358 NP_947508.1 CDS RPA2163 NC_005296.1 2436196 2436882 R SecC motif-containing protein complement(2436196..2436882) Rhodopseudomonas palustris CGA009 2693463 NP_947509.1 CDS groEL NC_005296.1 2437219 2438862 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is co-regulated with symbiotic nitrogen fixation genes; molecular chaperone GroEL complement(2437219..2438862) Rhodopseudomonas palustris CGA009 2693208 NP_947510.1 CDS groES NC_005296.1 2439028 2439342 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(2439028..2439342) Rhodopseudomonas palustris CGA009 2693592 NP_947511.1 CDS RPA2166 NC_005296.1 2439785 2440069 D hypothetical protein 2439785..2440069 Rhodopseudomonas palustris CGA009 2693155 NP_947512.1 CDS RPA2167 NC_005296.1 2440210 2441895 R hypothetical protein complement(2440210..2441895) Rhodopseudomonas palustris CGA009 2693372 NP_947513.1 CDS RPA2168 NC_005296.1 2442142 2443392 R Citation: Saier et al. BBA 1422:1-56, 1999; H+/nucleoside symporter complement(2442142..2443392) Rhodopseudomonas palustris CGA009 2693526 NP_947514.1 CDS rlp1 NC_005296.1 2443567 2444673 D ribulose bisphosphate carboxylase-like protein 2443567..2444673 Rhodopseudomonas palustris CGA009 2693425 NP_947515.1 CDS RPA2170 NC_005296.1 2444663 2445160 D hypothetical protein 2444663..2445160 Rhodopseudomonas palustris CGA009 2693152 NP_947516.1 CDS RPA2171 NC_005296.1 2445677 2446480 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2445677..2446480 Rhodopseudomonas palustris CGA009 2693489 NP_947517.1 CDS RPA2172 NC_005296.1 2446500 2447258 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; short-chain dehydrogenase/reductase SDR complement(2446500..2447258) Rhodopseudomonas palustris CGA009 2693351 NP_947518.1 CDS RPA2173 NC_005296.1 2447291 2447791 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; GCN5-like N-acetyltransferase complement(2447291..2447791) Rhodopseudomonas palustris CGA009 2693569 NP_947519.1 CDS RPA2174 NC_005296.1 2447810 2448556 R proteasome-type protease complement(2447810..2448556) Rhodopseudomonas palustris CGA009 2693285 NP_947520.1 CDS RPA2175 NC_005296.1 2448770 2449597 R transglutaminase complement(2448770..2449597) Rhodopseudomonas palustris CGA009 2693232 NP_947521.1 CDS RPA2176 NC_005296.1 2449647 2450591 R hypothetical protein complement(2449647..2450591) Rhodopseudomonas palustris CGA009 2693209 NP_947522.1 CDS RPA2177 NC_005296.1 2450743 2452161 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2450743..2452161) Rhodopseudomonas palustris CGA009 2693221 NP_947523.1 CDS RPA2178 NC_005296.1 2452385 2453122 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; molybdopterin binding domain-containing protein 2452385..2453122 Rhodopseudomonas palustris CGA009 2693205 NP_947524.1 CDS RPA2179 NC_005296.1 2453243 2453797 D catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 2453243..2453797 Rhodopseudomonas palustris CGA009 2693174 NP_947525.1 CDS RPA2180 NC_005296.1 2454102 2454776 D hypothetical protein 2454102..2454776 Rhodopseudomonas palustris CGA009 2693177 NP_947526.1 CDS RPA2181 NC_005296.1 2454971 2455993 R catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(2454971..2455993) Rhodopseudomonas palustris CGA009 2693185 NP_947527.1 CDS RPA2182 NC_005296.1 2456070 2456864 D glutathione S-transferase 2456070..2456864 Rhodopseudomonas palustris CGA009 2693558 NP_947528.1 CDS RPA2183 NC_005296.1 2457284 2457904 D DSBA oxidoreductase 2457284..2457904 Rhodopseudomonas palustris CGA009 2693540 NP_947529.1 CDS RPA2184 NC_005296.1 2457904 2458878 D oxidoreductase 2457904..2458878 Rhodopseudomonas palustris CGA009 2693485 NP_947530.1 CDS RPA2185 NC_005296.1 2458970 2459437 D acyl dehydratase 2458970..2459437 Rhodopseudomonas palustris CGA009 2693453 NP_947531.1 CDS RPA2186 NC_005296.1 2459456 2460373 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; short-chain dehydrogenase/reductase SDR 2459456..2460373 Rhodopseudomonas palustris CGA009 2693370 NP_947532.1 CDS RPA2187 NC_005296.1 2460577 2461812 D hypothetical protein 2460577..2461812 Rhodopseudomonas palustris CGA009 2693360 NP_947533.1 CDS RPA2188 NC_005296.1 2461819 2462145 R hypothetical protein complement(2461819..2462145) Rhodopseudomonas palustris CGA009 2693336 NP_947534.1 CDS RPA2189 NC_005296.1 2462142 2462798 R TetR family transcriptional regulator complement(2462142..2462798) Rhodopseudomonas palustris CGA009 2693273 NP_947535.1 CDS RPA2190 NC_005296.1 2462902 2464719 R ABC transporter ATPase complement(2462902..2464719) Rhodopseudomonas palustris CGA009 2693395 NP_947536.1 CDS RPA2191 NC_005296.1 2464730 2465206 R hypothetical protein complement(2464730..2465206) Rhodopseudomonas palustris CGA009 2693301 NP_947537.1 CDS RPA2192 NC_005296.1 2465309 2466109 D hypothetical protein 2465309..2466109 Rhodopseudomonas palustris CGA009 2690896 NP_947538.1 CDS RPA2193 NC_005296.1 2466304 2467518 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter perplasmic binding protein 2466304..2467518 Rhodopseudomonas palustris CGA009 2688832 NP_947539.1 CDS RPA2194 NC_005296.1 2467751 2470255 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; carbon-monoxide dehydrogenase large subunit complement(2467751..2470255) Rhodopseudomonas palustris CGA009 2690782 NP_947540.1 CDS RPA2195 NC_005296.1 2470320 2471435 D Ppx/GppA phosphatase 2470320..2471435 Rhodopseudomonas palustris CGA009 2690855 NP_947541.1 CDS RPA2196 NC_005296.1 2471462 2472175 R hypothetical protein complement(2471462..2472175) Rhodopseudomonas palustris CGA009 2690843 NP_947542.1 CDS RPA2197 NC_005296.1 2472235 2472948 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ribosomal RNA methyltransferase RrmJ/FtsJ 2472235..2472948 Rhodopseudomonas palustris CGA009 2690930 NP_947543.1 CDS RPA2198 NC_005296.1 2473309 2474886 R multidrug efflux protein complement(2473309..2474886) Rhodopseudomonas palustris CGA009 2690668 NP_947544.1 CDS RPA2199 NC_005296.1 2474976 2475224 D hypothetical protein 2474976..2475224 Rhodopseudomonas palustris CGA009 2690612 NP_947545.1 CDS guaB NC_005296.1 2475578 2477074 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 2475578..2477074 Rhodopseudomonas palustris CGA009 2690644 NP_947546.1 CDS RPA2201 NC_005296.1 2477373 2478398 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; quinone oxidoreductase 2477373..2478398 Rhodopseudomonas palustris CGA009 2693042 NP_947547.1 CDS RPA2202 NC_005296.1 2478589 2479890 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; SUN-family protein, RNA methyltransferase 2478589..2479890 Rhodopseudomonas palustris CGA009 2690956 NP_947548.1 CDS guaA NC_005296.1 2480182 2481804 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2480182..2481804 Rhodopseudomonas palustris CGA009 2693062 NP_947549.1 CDS RPA2204 NC_005296.1 2482087 2483343 D integrase 2482087..2483343 Rhodopseudomonas palustris CGA009 2693026 NP_947550.1 CDS RPA2205 NC_005296.1 2483315 2483662 R hypothetical protein complement(2483315..2483662) Rhodopseudomonas palustris CGA009 2690569 NP_947551.1 CDS RPA2206 NC_005296.1 2483746 2484126 R hypothetical protein complement(2483746..2484126) Rhodopseudomonas palustris CGA009 2693028 NP_947552.1 CDS RPA2207 NC_005296.1 2484202 2485770 D recombinase 2484202..2485770 Rhodopseudomonas palustris CGA009 2692967 NP_947553.1 CDS parB2 NC_005296.1 2485767 2486651 D ParB-like partioning protein 2485767..2486651 Rhodopseudomonas palustris CGA009 2692944 NP_947554.1 CDS RPA2209 NC_005296.1 2486653 2487543 D ParB-like nuclease 2486653..2487543 Rhodopseudomonas palustris CGA009 2689882 NP_947555.1 CDS RPA2210 NC_005296.1 2487834 2489702 D hypothetical protein 2487834..2489702 Rhodopseudomonas palustris CGA009 2688828 NP_947556.1 CDS RPA2211 NC_005296.1 2489714 2492842 R DEAD/DEAH box helicase complement(2489714..2492842) Rhodopseudomonas palustris CGA009 2692920 NP_947557.1 CDS RPA2212 NC_005296.1 2492832 2494688 R hypothetical protein complement(2492832..2494688) Rhodopseudomonas palustris CGA009 2692902 NP_947558.1 CDS RPA2213 NC_005296.1 2494678 2495862 R hypothetical protein complement(2494678..2495862) Rhodopseudomonas palustris CGA009 2692839 NP_947559.1 CDS RPA2214 NC_005296.1 2495915 2499256 R helicase complement(2495915..2499256) Rhodopseudomonas palustris CGA009 2691073 NP_947560.1 CDS RPA2215 NC_005296.1 2499276 2502677 R ATP-dependent exodeoxyribonuclease subunit A complement(2499276..2502677) Rhodopseudomonas palustris CGA009 2692879 NP_947561.1 CDS RPA2216 NC_005296.1 2502677 2505340 R hypothetical protein complement(2502677..2505340) Rhodopseudomonas palustris CGA009 2692796 NP_947562.1 CDS RPA2217 NC_005296.1 2505626 2506510 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2505626..2506510 Rhodopseudomonas palustris CGA009 2691040 NP_947563.1 CDS RPA2218 NC_005296.1 2506544 2510062 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ATP-dependent RNA helicase 2506544..2510062 Rhodopseudomonas palustris CGA009 2691023 NP_947564.1 CDS RPA2219 NC_005296.1 2510059 2514300 D ATPase 2510059..2514300 Rhodopseudomonas palustris CGA009 2692786 NP_947565.1 CDS RPA2220 NC_005296.1 2514284 2517118 D hypothetical protein 2514284..2517118 Rhodopseudomonas palustris CGA009 2692778 NP_947566.1 CDS RPA2221 NC_005296.1 2517132 2520431 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2517132..2520431 Rhodopseudomonas palustris CGA009 2689951 NP_947567.1 CDS RPA2222 NC_005296.1 2520519 2521466 D LysR family transcriptional regulator 2520519..2521466 Rhodopseudomonas palustris CGA009 2692745 NP_947568.1 CDS RPA2223 NC_005296.1 2521433 2521681 R hypothetical protein complement(2521433..2521681) Rhodopseudomonas palustris CGA009 2692741 NP_947569.1 CDS trbI1 NC_005296.1 2521686 2522930 R type IV secretion system subunit TrbI complement(2521686..2522930) Rhodopseudomonas palustris CGA009 2689970 NP_947570.1 CDS trbG1 NC_005296.1 2522927 2523928 R conjugal transfer protein TrbG complement(2522927..2523928) Rhodopseudomonas palustris CGA009 2692731 NP_947571.1 CDS trbF1 NC_005296.1 2523928 2524614 R conjugal transfer protein TrbF complement(2523928..2524614) Rhodopseudomonas palustris CGA009 2688854 NP_947572.1 CDS trbL NC_005296.1 2524611 2525909 R type IV secretion VirB6 family; conjugal transfer protein TrbL complement(2524611..2525909) Rhodopseudomonas palustris CGA009 2692679 NP_947573.1 CDS trbK NC_005296.1 2525909 2526256 R hypothetical protein complement(2525909..2526256) Rhodopseudomonas palustris CGA009 2689041 NP_947574.1 CDS trbJ NC_005296.1 2526265 2527008 R conjugal transfer protein TrbJ complement(2526265..2527008) Rhodopseudomonas palustris CGA009 2688957 NP_947575.1 CDS trbE1 NC_005296.1 2527005 2529452 R type IV secretion system VirB4 family; conjugal transfer ATPase TrbE complement(2527005..2529452) Rhodopseudomonas palustris CGA009 2692594 NP_947576.1 CDS trbD NC_005296.1 2529449 2529721 R conjugal transfer protein TrbD complement(2529449..2529721) Rhodopseudomonas palustris CGA009 2692651 NP_947577.1 CDS trbC1 NC_005296.1 2529721 2530038 R conjugal transfer protein; TrbC complement(2529721..2530038) Rhodopseudomonas palustris CGA009 2692585 NP_947578.1 CDS trbB1 NC_005296.1 2530035 2531018 R conjugal transfer protein TrbB complement(2530035..2531018) Rhodopseudomonas palustris CGA009 2692603 NP_947579.1 CDS RPA2234 NC_005296.1 2531155 2531598 R hypothetical protein complement(2531155..2531598) Rhodopseudomonas palustris CGA009 2692492 NP_947580.1 CDS traG2 NC_005296.1 2531595 2533598 R type IV secretion VirD4 coupling protein family; conjugal transfer coupling protein TraG complement(2531595..2533598) Rhodopseudomonas palustris CGA009 2690423 NP_947581.1 CDS RPA2236 NC_005296.1 2533709 2535463 R hypothetical protein complement(2533709..2535463) Rhodopseudomonas palustris CGA009 2690383 NP_947582.1 CDS RPA2237 NC_005296.1 2535732 2536574 R lytic transglycosylase complement(2535732..2536574) Rhodopseudomonas palustris CGA009 2692477 NP_947583.1 CDS RPA2238 NC_005296.1 2537089 2537562 R hypothetical protein complement(2537089..2537562) Rhodopseudomonas palustris CGA009 2692465 NP_947584.1 CDS RPA2239 NC_005296.1 2537801 2538439 R partition protein complement(2537801..2538439) Rhodopseudomonas palustris CGA009 2690395 NP_947585.1 CDS RPA2240 NC_005296.1 2538642 2539544 R replication protein A complement(2538642..2539544) Rhodopseudomonas palustris CGA009 2692389 NP_947586.1 CDS RPA2241 NC_005296.1 2539976 2540539 R hypothetical protein complement(2539976..2540539) Rhodopseudomonas palustris CGA009 2692445 NP_947587.1 CDS RPA2242 NC_005296.1 2540885 2541145 R hypothetical protein complement(2540885..2541145) Rhodopseudomonas palustris CGA009 2692430 NP_947588.1 CDS RPA2243 NC_005296.1 2541339 2541584 D XRE family transcriptional regulator 2541339..2541584 Rhodopseudomonas palustris CGA009 2690365 NP_947589.1 CDS RPA2244 NC_005296.1 2541653 2541976 R hypothetical protein complement(2541653..2541976) Rhodopseudomonas palustris CGA009 2690341 NP_947590.1 CDS RPA2245 NC_005296.1 2542604 2543107 R hypothetical protein complement(2542604..2543107) Rhodopseudomonas palustris CGA009 2692396 NP_947591.1 CDS RPA2246 NC_005296.1 2543519 2543944 D hypothetical protein 2543519..2543944 Rhodopseudomonas palustris CGA009 2690271 NP_947592.1 CDS RPA2247 NC_005296.1 2543965 2545224 R hypothetical protein complement(2543965..2545224) Rhodopseudomonas palustris CGA009 2690272 NP_947593.1 CDS RPA2248 NC_005296.1 2545228 2546292 R hypothetical protein complement(2545228..2546292) Rhodopseudomonas palustris CGA009 2690266 NP_947594.1 CDS RPA2249 NC_005296.1 2546279 2550634 R methylase/helicase complement(2546279..2550634) Rhodopseudomonas palustris CGA009 2692328 NP_947595.1 CDS RPA2250 NC_005296.1 2550722 2551054 R hypothetical protein complement(2550722..2551054) Rhodopseudomonas palustris CGA009 2690218 NP_947596.1 CDS RPA2251 NC_005296.1 2551051 2553156 R plasmid stabilization protein complement(2551051..2553156) Rhodopseudomonas palustris CGA009 2690203 NP_947597.1 CDS RPA2252 NC_005296.1 2553276 2554220 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ardC antirestriction protein complement(2553276..2554220) Rhodopseudomonas palustris CGA009 2692298 NP_947598.1 CDS RPA2253 NC_005296.1 2554308 2555078 D hypothetical protein 2554308..2555078 Rhodopseudomonas palustris CGA009 2692251 NP_947599.1 CDS RPA2254 NC_005296.1 2555371 2556099 R hypothetical protein complement(2555371..2556099) Rhodopseudomonas palustris CGA009 2692232 NP_947600.1 CDS RPA2255 NC_005296.1 2556144 2556767 R hypothetical protein complement(2556144..2556767) Rhodopseudomonas palustris CGA009 2689112 NP_947601.1 CDS RPA2256 NC_005296.1 2557368 2557700 D ArsR family transcriptional regulator 2557368..2557700 Rhodopseudomonas palustris CGA009 2690982 NP_947602.1 CDS arsC1 NC_005296.1 2557712 2558140 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; arsenate reductase 2557712..2558140 Rhodopseudomonas palustris CGA009 2692157 NP_947603.1 CDS arsB NC_005296.1 2558140 2559423 D arsenical pump membrane protein 2558140..2559423 Rhodopseudomonas palustris CGA009 2692190 NP_947604.1 CDS arsH NC_005296.1 2559423 2560178 D arsenical resistance protein ArsH 2559423..2560178 Rhodopseudomonas palustris CGA009 2690164 NP_947605.1 CDS RPA2260 NC_005296.1 2560618 2564379 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; viral RNA helicase 2560618..2564379 Rhodopseudomonas palustris CGA009 2691520 NP_947606.1 CDS RPA2261 NC_005296.1 2564583 2564822 D GMP synthase 2564583..2564822 Rhodopseudomonas palustris CGA009 2692084 NP_947607.1 CDS gltS NC_005296.1 2565446 2566642 R glutamate permease complement(2565446..2566642) Rhodopseudomonas palustris CGA009 2691989 NP_947608.1 CDS RPA2263 NC_005296.1 2566820 2567248 R plasmid stabilization protein complement(2566820..2567248) Rhodopseudomonas palustris CGA009 2692022 NP_947609.1 CDS RPA2264 NC_005296.1 2567248 2567742 R hypothetical protein complement(2567248..2567742) Rhodopseudomonas palustris CGA009 2691928 NP_947610.1 CDS RPA2265 NC_005296.1 2567739 2568734 R hypothetical protein complement(2567739..2568734) Rhodopseudomonas palustris CGA009 2690148 NP_947611.1 CDS gst1 NC_005296.1 2568791 2569447 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glutathione S-transferase 2568791..2569447 Rhodopseudomonas palustris CGA009 2688829 NP_947612.1 CDS RPA2267 NC_005296.1 2569676 2570119 D hypothetical protein 2569676..2570119 Rhodopseudomonas palustris CGA009 2689163 NP_947613.1 CDS RPA2268 NC_005296.1 2570195 2570755 D flavin reductase-like protein 2570195..2570755 Rhodopseudomonas palustris CGA009 2691895 NP_947614.1 CDS RPA2269 NC_005296.1 2570803 2572605 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2570803..2572605) Rhodopseudomonas palustris CGA009 2691899 NP_947615.1 CDS RPA2270 NC_005296.1 2572793 2573764 R hypothetical protein complement(2572793..2573764) Rhodopseudomonas palustris CGA009 2691906 NP_947616.1 CDS RPA2271 NC_005296.1 2573878 2575062 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(2573878..2575062) Rhodopseudomonas palustris CGA009 2690059 NP_947617.1 CDS RPA2272 NC_005296.1 2575540 2575887 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2575540..2575887 Rhodopseudomonas palustris CGA009 2690065 NP_947618.1 CDS RPA2273 NC_005296.1 2576083 2576379 D hypothetical protein 2576083..2576379 Rhodopseudomonas palustris CGA009 2690076 NP_947619.1 CDS RPA2274 NC_005296.1 2576370 2576729 D hypothetical protein 2576370..2576729 Rhodopseudomonas palustris CGA009 2690974 NP_947620.1 CDS RPA2275 NC_005296.1 2576915 2577670 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched chain amino acid ABC transporter ATP-binding protein 2576915..2577670 Rhodopseudomonas palustris CGA009 2690018 NP_947621.1 CDS RPA2276 NC_005296.1 2577663 2578409 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched chain amino acid ABC transporter ATP-binding protein 2577663..2578409 Rhodopseudomonas palustris CGA009 2690036 NP_947622.1 CDS RPA2277 NC_005296.1 2578448 2579323 D inner-membrane translocator 2578448..2579323 Rhodopseudomonas palustris CGA009 2691863 NP_947623.1 CDS RPA2278 NC_005296.1 2579325 2580296 D inner-membrane translocator 2579325..2580296 Rhodopseudomonas palustris CGA009 2689720 NP_947624.1 CDS RPA2279 NC_005296.1 2580448 2583054 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2580448..2583054) Rhodopseudomonas palustris CGA009 2691397 NP_947625.1 CDS RPA2280 NC_005296.1 2583631 2584275 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2583631..2584275 Rhodopseudomonas palustris CGA009 2691831 NP_947626.1 CDS RPA2281 NC_005296.1 2584290 2585306 D phosphate transporter 2584290..2585306 Rhodopseudomonas palustris CGA009 2691837 NP_947627.1 CDS RPA2282 NC_005296.1 2585324 2585635 R hypothetical protein complement(2585324..2585635) Rhodopseudomonas palustris CGA009 2689392 NP_947628.1 CDS RPA2283 NC_005296.1 2585678 2585953 R proteic killer suppression protein complement(2585678..2585953) Rhodopseudomonas palustris CGA009 2691765 NP_947629.1 CDS RPA2284 NC_005296.1 2586042 2586356 R drug efflux protein complement(2586042..2586356) Rhodopseudomonas palustris CGA009 2691773 NP_947630.1 CDS prfC NC_005296.1 2586587 2588212 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; peptide chain release factor 3 2586587..2588212 Rhodopseudomonas palustris CGA009 2689946 NP_947631.1 CDS RPA2286 NC_005296.1 2589207 2590193 R hypothetical protein complement(2589207..2590193) Rhodopseudomonas palustris CGA009 2689913 NP_947632.1 CDS RPA2287 NC_005296.1 2590350 2591336 D hypothetical protein 2590350..2591336 Rhodopseudomonas palustris CGA009 2691736 NP_947633.1 CDS RPA2288 NC_005296.1 2591445 2591903 R cyclase complement(2591445..2591903) Rhodopseudomonas palustris CGA009 2689898 NP_947634.1 CDS RPA2289 NC_005296.1 2592184 2593512 D hypothetical protein 2592184..2593512 Rhodopseudomonas palustris CGA009 2691222 NP_947635.1 CDS RPA2290 NC_005296.1 2593524 2595245 D hypothetical protein 2593524..2595245 Rhodopseudomonas palustris CGA009 2691218 NP_947636.1 CDS RPA2291 NC_005296.1 2595381 2597675 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; adenylate/guanylate cyclase 2595381..2597675 Rhodopseudomonas palustris CGA009 2691681 NP_947637.1 CDS RPA2292 NC_005296.1 2597690 2599114 R multi-sensor signal transduction histidine kinase complement(2597690..2599114) Rhodopseudomonas palustris CGA009 2691163 NP_947638.1 CDS RPA2293 NC_005296.1 2599302 2599898 R hypothetical protein complement(2599302..2599898) Rhodopseudomonas palustris CGA009 2691414 NP_947639.1 CDS RPA2294 NC_005296.1 2600118 2600813 D TetR family transcriptional regulator 2600118..2600813 Rhodopseudomonas palustris CGA009 2688857 NP_947640.1 CDS RPA2295 NC_005296.1 2601286 2601942 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2601286..2601942 Rhodopseudomonas palustris CGA009 2688961 NP_947641.1 CDS RPA2296 NC_005296.1 2601939 2602415 D hypothetical protein 2601939..2602415 Rhodopseudomonas palustris CGA009 2689054 NP_947642.1 CDS RPA2297 NC_005296.1 2602665 2605472 D structural flagella protein; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellin 2602665..2605472 Rhodopseudomonas palustris CGA009 2688910 NP_947643.1 CDS RPA2298 NC_005296.1 2605541 2606095 D hypothetical protein 2605541..2606095 Rhodopseudomonas palustris CGA009 2691554 NP_947644.1 CDS RPA2299 NC_005296.1 2606224 2606970 D LuxR family transcriptional regulator 2606224..2606970 Rhodopseudomonas palustris CGA009 2691459 NP_947645.1 CDS RPA2300 NC_005296.1 2607195 2607848 D LuxR family transcriptional regulator 2607195..2607848 Rhodopseudomonas palustris CGA009 2691617 NP_947646.1 CDS RPA2301 NC_005296.1 2607873 2608865 R AraC family transcriptional regulator complement(2607873..2608865) Rhodopseudomonas palustris CGA009 2691639 NP_947647.1 CDS RPA2302 NC_005296.1 2609019 2610710 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl-CoA synthetase 2609019..2610710 Rhodopseudomonas palustris CGA009 2691074 NP_947648.1 CDS RPA2303 NC_005296.1 2610729 2611496 D 3-hydroxyacyl-CoA dehydrogenase 2610729..2611496 Rhodopseudomonas palustris CGA009 2691102 NP_947649.1 CDS RPA2304 NC_005296.1 2611555 2612742 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl-CoA thiolase 2611555..2612742 Rhodopseudomonas palustris CGA009 2691462 NP_947650.1 CDS RPA2305 NC_005296.1 2612750 2613877 D acyl-CoA dehydrogenase 2612750..2613877 Rhodopseudomonas palustris CGA009 2691502 NP_947651.1 CDS RPA2306 NC_005296.1 2614239 2614787 D nickel-dependent hydrogenase b-type cytochrome subunit 2614239..2614787 Rhodopseudomonas palustris CGA009 2691552 NP_947652.1 CDS RPA2307 NC_005296.1 2614856 2617183 R tonB-dependent receptor complement(2614856..2617183) Rhodopseudomonas palustris CGA009 2691411 NP_947653.1 CDS RPA2308 NC_005296.1 2617418 2618596 D ABC transporter periplasmic iron siderophore binding protein 2617418..2618596 Rhodopseudomonas palustris CGA009 2691181 NP_947654.1 CDS RPA2309 NC_005296.1 2618593 2619684 D iron chelatin ABC transporter permease subunit 2618593..2619684 Rhodopseudomonas palustris CGA009 2691153 NP_947655.1 CDS RPA2310 NC_005296.1 2619681 2620451 D iron ABC transporter ATP-binding protein 2619681..2620451 Rhodopseudomonas palustris CGA009 2689914 NP_947656.1 CDS RPA2311 NC_005296.1 2620446 2621075 R hypothetical protein complement(2620446..2621075) Rhodopseudomonas palustris CGA009 2691686 NP_947657.1 CDS RPA2312 NC_005296.1 2621072 2621737 R hypothetical protein complement(2621072..2621737) Rhodopseudomonas palustris CGA009 2691393 NP_947658.1 CDS RPA2313 NC_005296.1 2621691 2622218 R hypothetical protein complement(2621691..2622218) Rhodopseudomonas palustris CGA009 2689987 NP_947659.1 CDS RPA2314 NC_005296.1 2622816 2623256 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cytochrome c556 2622816..2623256 Rhodopseudomonas palustris CGA009 2691741 NP_947660.1 CDS RPA2315 NC_005296.1 2623260 2623934 D nickel-dependent hydrogenase b-type cytochrome subunit 2623260..2623934 Rhodopseudomonas palustris CGA009 2691810 NP_947661.1 CDS RPA2316 NC_005296.1 2623966 2624751 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(2623966..2624751) Rhodopseudomonas palustris CGA009 2691762 NP_947662.1 CDS gctB NC_005296.1 2624776 2625570 R CoA transferase small subunit B complement(2624776..2625570) Rhodopseudomonas palustris CGA009 2691342 NP_947663.1 CDS gctA NC_005296.1 2625567 2626562 R glutaconate CoA transferase subunit A complement(2625567..2626562) Rhodopseudomonas palustris CGA009 2689551 NP_947664.1 CDS RPA2319 NC_005296.1 2626690 2627682 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2626690..2627682) Rhodopseudomonas palustris CGA009 2689904 NP_947665.1 CDS RPA2320 NC_005296.1 2627760 2629262 R tripartite tricarboxylate transport(TTT) family subunit TctA complement(2627760..2629262) Rhodopseudomonas palustris CGA009 2691841 NP_947666.1 CDS RPA2321 NC_005296.1 2629262 2629738 R tripartite tricarboxylate transport(TTT) family subunit TctB complement(2629262..2629738) Rhodopseudomonas palustris CGA009 2691308 NP_947667.1 CDS RPA2322 NC_005296.1 2630453 2631346 D LysR family transcriptional regulator 2630453..2631346 Rhodopseudomonas palustris CGA009 2689723 NP_947668.1 CDS goaT NC_005296.1 2631514 2632788 D 4-aminobutyrate aminotransferase 2631514..2632788 Rhodopseudomonas palustris CGA009 2689562 NP_947669.1 CDS gabD2 NC_005296.1 2632826 2634277 D succinate-semialdehyde dehydrogenase 2632826..2634277 Rhodopseudomonas palustris CGA009 2690005 NP_947670.1 CDS RPA2325 NC_005296.1 2634327 2635625 D catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 2634327..2635625 Rhodopseudomonas palustris CGA009 2690966 NP_947671.1 CDS RPA2326 NC_005296.1 2635625 2637214 D thiamine-pyrophosphate requiring enzyme; hypothetical protein 2635625..2637214 Rhodopseudomonas palustris CGA009 2689841 NP_947672.1 CDS RPA2327 NC_005296.1 2637293 2638882 D ABC transporter oligopeptide-binding protein 2637293..2638882 Rhodopseudomonas palustris CGA009 2690045 NP_947673.1 CDS RPA2328 NC_005296.1 2638879 2639901 D ABC transporter permease 2638879..2639901 Rhodopseudomonas palustris CGA009 2690032 NP_947674.1 CDS RPA2329 NC_005296.1 2639914 2640753 D ABC transporter permease 2639914..2640753 Rhodopseudomonas palustris CGA009 2690096 NP_947675.1 CDS RPA2330 NC_005296.1 2640750 2642408 D ABC transporter ATP-binding protein 2640750..2642408 Rhodopseudomonas palustris CGA009 2690066 NP_947676.1 CDS ggt2 NC_005296.1 2642483 2644060 D gamma-glutamyltranspeptidase 2642483..2644060 Rhodopseudomonas palustris CGA009 2691905 NP_947677.1 CDS RPA2332 NC_005296.1 2644354 2645508 D nuclease 2644354..2645508 Rhodopseudomonas palustris CGA009 2688852 NP_947678.1 CDS ctpC NC_005296.1 2645744 2647840 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cation transport ATPase copper transporter complement(2645744..2647840) Rhodopseudomonas palustris CGA009 2691978 NP_947679.1 CDS RPA2334 NC_005296.1 2647837 2648175 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2647837..2648175) Rhodopseudomonas palustris CGA009 2691968 NP_947680.1 CDS RPA2335 NC_005296.1 2648168 2648509 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2648168..2648509) Rhodopseudomonas palustris CGA009 2691954 NP_947681.1 CDS RPA2336 NC_005296.1 2648496 2648819 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2648496..2648819) Rhodopseudomonas palustris CGA009 2692068 NP_947682.1 CDS RPA2337 NC_005296.1 2648837 2649169 R hypothetical protein complement(2648837..2649169) Rhodopseudomonas palustris CGA009 2691316 NP_947683.1 CDS RPA2338 NC_005296.1 2649177 2649677 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2649177..2649677) Rhodopseudomonas palustris CGA009 2692079 NP_947684.1 CDS RPA2339 NC_005296.1 2650175 2650666 D FUR family transcriptional regulator 2650175..2650666 Rhodopseudomonas palustris CGA009 2689133 NP_947685.1 CDS RPA2340 NC_005296.1 2650793 2652166 R hypothetical protein complement(2650793..2652166) Rhodopseudomonas palustris CGA009 2692159 NP_947686.1 CDS ilvD NC_005296.1 2652218 2653897 R dihydroxy-acid dehydratase complement(2652218..2653897) Rhodopseudomonas palustris CGA009 2692141 NP_947687.1 CDS RPA2342 NC_005296.1 2653962 2655269 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; transmembrane transport protein complement(2653962..2655269) Rhodopseudomonas palustris CGA009 2691002 NP_947688.1 CDS RPA2343 NC_005296.1 2655678 2656355 D GntR family transcriptional regulator 2655678..2656355 Rhodopseudomonas palustris CGA009 2692224 NP_947689.1 CDS RPA2344 NC_005296.1 2656394 2657014 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2656394..2657014) Rhodopseudomonas palustris CGA009 2692214 NP_947690.1 CDS RPA2345 NC_005296.1 2657015 2658025 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2657015..2658025) Rhodopseudomonas palustris CGA009 2692193 NP_947691.1 CDS RPA2346 NC_005296.1 2658270 2659448 R hypothetical protein complement(2658270..2659448) Rhodopseudomonas palustris CGA009 2692322 NP_947692.1 CDS RPA2347 NC_005296.1 2659490 2660881 R vanadium nitrogenase associated protein N complement(2659490..2660881) Rhodopseudomonas palustris CGA009 2690229 NP_947693.1 CDS RPA2348 NC_005296.1 2660881 2662416 R nitrogenase molybdenum-iron protein subunit alpha complement(2660881..2662416) Rhodopseudomonas palustris CGA009 2692289 NP_947694.1 CDS metY NC_005296.1 2662641 2663834 R homocysteine synthase complement(2662641..2663834) Rhodopseudomonas palustris CGA009 2690205 NP_947695.1 CDS metC NC_005296.1 2664108 2665409 D O-acetylhomoserine sulfhydrylase 2664108..2665409 Rhodopseudomonas palustris CGA009 2692364 NP_947696.1 CDS RPA2351 NC_005296.1 2665574 2666062 R AsnC family transcriptional regulator complement(2665574..2666062) Rhodopseudomonas palustris CGA009 2690314 NP_947697.1 CDS RPA2352 NC_005296.1 2666343 2666840 R hypothetical protein complement(2666343..2666840) Rhodopseudomonas palustris CGA009 2692336 NP_947698.1 CDS nifH1 NC_005296.1 2666883 2667758 R nitrogenase NifH subunit complement(2666883..2667758) Rhodopseudomonas palustris CGA009 2689079 NP_947699.1 CDS nifB2 NC_005296.1 2667804 2668727 R nitrogenase iron-molybdenum cofactor biosynthesis protein NifB complement(2667804..2668727) Rhodopseudomonas palustris CGA009 2692394 NP_947700.1 CDS RPA2355 NC_005296.1 2668724 2669107 R nitrogenase NifB complement(2668724..2669107) Rhodopseudomonas palustris CGA009 2692391 NP_947701.1 CDS RPA2356 NC_005296.1 2669577 2670974 D cystathionine beta-synthase 2669577..2670974 Rhodopseudomonas palustris CGA009 2690364 NP_947702.1 CDS RPA2357 NC_005296.1 2670976 2672148 D cystathionine gamma-lyase 2670976..2672148 Rhodopseudomonas palustris CGA009 2690391 NP_947703.1 CDS RPA2358 NC_005296.1 2672250 2673296 R 2OG-Fe(II) oxygenase complement(2672250..2673296) Rhodopseudomonas palustris CGA009 2692442 NP_947704.1 CDS RPA2359 NC_005296.1 2673702 2674571 D hypothetical protein 2673702..2674571 Rhodopseudomonas palustris CGA009 2692541 NP_947705.1 CDS RPA2360 NC_005296.1 2674580 2675713 D ABC transporter ATP-binding protein 2674580..2675713 Rhodopseudomonas palustris CGA009 2692504 NP_947706.1 CDS RPA2361 NC_005296.1 2675667 2676368 D ABC transporter permease 2675667..2676368 Rhodopseudomonas palustris CGA009 2690409 NP_947707.1 CDS RPA2362 NC_005296.1 2676404 2677717 D O-acetylhomoserine sulfhydrylase 2676404..2677717 Rhodopseudomonas palustris CGA009 2692546 NP_947708.1 CDS NifD1 NC_005296.1 2677746 2679251 D nitrogenase molybdenum-iron protein subunit alpha 2677746..2679251 Rhodopseudomonas palustris CGA009 2690470 NP_947709.1 CDS RPA2364 NC_005296.1 2679264 2680643 D nitrogenase iron-molybdenum cofactor biosynthesis protein NifE-like protein 2679264..2680643 Rhodopseudomonas palustris CGA009 2690440 NP_947710.1 CDS RPA2365 NC_005296.1 2680655 2681755 R L-allo-threonine aldolase complement(2680655..2681755) Rhodopseudomonas palustris CGA009 2692635 NP_947711.1 CDS RPA2366 NC_005296.1 2682058 2682309 D hypothetical protein 2682058..2682309 Rhodopseudomonas palustris CGA009 2692626 NP_947712.1 CDS RPA2367 NC_005296.1 2682429 2683532 R two component sensor histidine kinase AdeS complement(2682429..2683532) Rhodopseudomonas palustris CGA009 2692581 NP_947713.1 CDS RPA2368 NC_005296.1 2683529 2683762 R hypothetical protein complement(2683529..2683762) Rhodopseudomonas palustris CGA009 2689060 NP_947714.1 CDS RPA2369 NC_005296.1 2683800 2684213 R hypothetical protein complement(2683800..2684213) Rhodopseudomonas palustris CGA009 2689050 NP_947715.1 CDS RPA2369a NC_005296.1 2684210 2684467 R hypothetical protein complement(2684210..2684467) Rhodopseudomonas palustris CGA009 2688889 NP_947716.1 CDS RPA2370 NC_005296.1 2684472 2684612 R hypothetical protein complement(2684472..2684612) Rhodopseudomonas palustris CGA009 2688920 NP_947717.1 CDS mexA NC_005296.1 2684924 2686141 D RND multidrug efflux membrane fusion protein MexA 2684924..2686141 Rhodopseudomonas palustris CGA009 2688968 NP_947718.1 CDS mexB NC_005296.1 2686138 2689305 D RND multidrug efflux transporter MexB 2686138..2689305 Rhodopseudomonas palustris CGA009 2692698 NP_947719.1 CDS RPA2373 NC_005296.1 2689314 2690843 D outer membrane protein 2689314..2690843 Rhodopseudomonas palustris CGA009 2690989 NP_947720.1 CDS RPA2374 NC_005296.1 2690837 2691043 D hypothetical protein 2690837..2691043 Rhodopseudomonas palustris CGA009 2690495 NP_947721.1 CDS RPA2375 NC_005296.1 2691216 2692823 D hypothetical protein 2691216..2692823 Rhodopseudomonas palustris CGA009 2689776 NP_947722.1 CDS RPA2377 NC_005296.1 2693666 2693968 R hypothetical protein complement(2693666..2693968) Rhodopseudomonas palustris CGA009 2692810 NP_947723.1 CDS RPA2378 NC_005296.1 2694083 2696398 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; tonB-dependent receptor protein complement(2694083..2696398) Rhodopseudomonas palustris CGA009 2692781 NP_947724.1 CDS RPA2379 NC_005296.1 2696546 2697043 R acetyltransferase complement(2696546..2697043) Rhodopseudomonas palustris CGA009 2692831 NP_947725.1 CDS RPA2380 NC_005296.1 2697057 2699288 R tonB dependent iron siderophore receptor complement(2697057..2699288) Rhodopseudomonas palustris CGA009 2691029 NP_947726.1 CDS fecR4 NC_005296.1 2699387 2700403 R iron siderophore sensor protein FecR complement(2699387..2700403) Rhodopseudomonas palustris CGA009 2690531 NP_947727.1 CDS RPA2382 NC_005296.1 2700496 2701254 R iron(III) ABC transporter ATP-binding protein complement(2700496..2701254) Rhodopseudomonas palustris CGA009 2692866 NP_947728.1 CDS RPA2383 NC_005296.1 2701251 2702201 R iron(III) ABC transporter permease complement(2701251..2702201) Rhodopseudomonas palustris CGA009 2692838 NP_947729.1 CDS RPA2384 NC_005296.1 2702194 2703171 R ironIII transport permease complement(2702194..2703171) Rhodopseudomonas palustris CGA009 2692929 NP_947730.1 CDS RPA2385 NC_005296.1 2703168 2704073 R ABC transporter periplasmic Fe+3 siderophore binding protein complement(2703168..2704073) Rhodopseudomonas palustris CGA009 2692982 NP_947731.1 CDS RPA2386 NC_005296.1 2704064 2704981 R hypothetical protein complement(2704064..2704981) Rhodopseudomonas palustris CGA009 2692960 NP_947732.1 CDS RPA2387 NC_005296.1 2704981 2706291 R hypothetical protein complement(2704981..2706291) Rhodopseudomonas palustris CGA009 2693016 NP_947733.1 CDS RPA2388 NC_005296.1 2706288 2707556 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(2706288..2707556) Rhodopseudomonas palustris CGA009 2693007 NP_947734.1 CDS RPA2389 NC_005296.1 2707553 2709241 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; rhizobactin siderophore biosynthesis protein RhsF complement(2707553..2709241) Rhodopseudomonas palustris CGA009 2690530 NP_947735.1 CDS RPA2390 NC_005296.1 2709270 2711051 R rhizobactin siderophore biosynthesis protein rhbC complement(2709270..2711051) Rhodopseudomonas palustris CGA009 2690952 NP_947736.1 CDS RPA2391 NC_005296.1 2711220 2711837 D RNA polymerase ECF-type sigma factor FecI 2711220..2711837 Rhodopseudomonas palustris CGA009 2690586 NP_947737.1 CDS prpC NC_005296.1 2713351 2714226 D 2-methylcitrate synthase 2713351..2714226 Rhodopseudomonas palustris CGA009 2693074 NP_947738.1 CDS prpB NC_005296.1 2714237 2715154 D carboxyphosphonoenolpyruvate phosphonomutase 2714237..2715154 Rhodopseudomonas palustris CGA009 2693053 NP_947739.1 CDS RPA2396 NC_005296.1 2715184 2715783 D hypothetical protein 2715184..2715783 Rhodopseudomonas palustris CGA009 2690615 NP_947740.1 CDS metE NC_005296.1 2716133 2718499 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 2716133..2718499 Rhodopseudomonas palustris CGA009 2689926 NP_947741.1 CDS RPA2398 NC_005296.1 2719364 2721757 D iron siderophore uptake receptor family protein 2719364..2721757 Rhodopseudomonas palustris CGA009 2690652 NP_947742.1 CDS cobN NC_005296.1 2721766 2725668 D with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN 2721766..2725668 Rhodopseudomonas palustris CGA009 2690640 NP_947743.1 CDS RPA2400 NC_005296.1 2725671 2726141 D hypothetical protein 2725671..2726141 Rhodopseudomonas palustris CGA009 2690744 NP_947744.1 CDS RPA2401 NC_005296.1 2726141 2726476 D hypothetical protein 2726141..2726476 Rhodopseudomonas palustris CGA009 2690850 NP_947745.1 CDS RPA2402 NC_005296.1 2726837 2727190 D hypothetical protein 2726837..2727190 Rhodopseudomonas palustris CGA009 2690781 NP_947746.1 CDS RPA2403 NC_005296.1 2727725 2728216 D iron-chelator utilization protein 2727725..2728216 Rhodopseudomonas palustris CGA009 2688737 NP_947747.1 CDS RPA2404 NC_005296.1 2728872 2729876 D AraC family transcriptional regulator 2728872..2729876 Rhodopseudomonas palustris CGA009 2689527 NP_947748.1 CDS draT2 NC_005296.1 2729949 2730821 D NAD+ ADP-ribosyltransferase 2729949..2730821 Rhodopseudomonas palustris CGA009 2691362 NP_947749.1 CDS draG NC_005296.1 2730833 2731723 D ADP-ribosyl-(dinitrogen reductase) hydrolase 2730833..2731723 Rhodopseudomonas palustris CGA009 2689623 NP_947750.1 CDS RPA2407 NC_005296.1 2732218 2732553 R hypothetical protein complement(2732218..2732553) Rhodopseudomonas palustris CGA009 2689276 NP_947751.1 CDS amiC1 NC_005296.1 2732949 2734106 D Citation: EMBO J 1999 Oct 1;18(19):5175-86; aliphatic amidase expression-regulating protein AmiC 2732949..2734106 Rhodopseudomonas palustris CGA009 2689636 NP_947752.1 CDS RPA2409 NC_005296.1 2734103 2734768 D Citation: EMBO J 1999 Oct 1;18(19):5175-86; AmiR antitermination protein 2734103..2734768 Rhodopseudomonas palustris CGA009 2689360 NP_947753.1 CDS RPA2410 NC_005296.1 2734780 2736018 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; urea/short-chain amide transport system substrate-binding protein 2734780..2736018 Rhodopseudomonas palustris CGA009 2693148 NP_947754.1 CDS RPA2411 NC_005296.1 2736137 2737009 D ABC transporter permease 2736137..2737009 Rhodopseudomonas palustris CGA009 2689519 NP_947755.1 CDS RPA2412 NC_005296.1 2737021 2738085 D ABC transporter permease 2737021..2738085 Rhodopseudomonas palustris CGA009 2689826 NP_947756.1 CDS RPA2413 NC_005296.1 2738085 2738807 D urea/short-chain amide transport system ATP-binding protein 2738085..2738807 Rhodopseudomonas palustris CGA009 2693147 NP_947757.1 CDS RPA2414 NC_005296.1 2738800 2739513 D urea/short-chain amide transport system ATP-binding protein 2738800..2739513 Rhodopseudomonas palustris CGA009 2689649 NP_947758.1 CDS RPA2415 NC_005296.1 2739539 2740528 D acetamidase/formamidase 2739539..2740528 Rhodopseudomonas palustris CGA009 2689098 NP_947759.1 CDS RPA2416 NC_005296.1 2740543 2742282 D nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 2740543..2742282 Rhodopseudomonas palustris CGA009 2691380 NP_947760.1 CDS RPA2417 NC_005296.1 2742298 2743059 D 3-ketoacyl-ACP reductase 2742298..2743059 Rhodopseudomonas palustris CGA009 2689096 NP_947761.1 CDS RPA2419 NC_005296.1 2745582 2747036 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; outer membrane protein porin 2745582..2747036 Rhodopseudomonas palustris CGA009 2688735 NP_947762.1 CDS RPA2420 NC_005296.1 2747337 2749574 R lytic transglycosylase catalytic complement(2747337..2749574) Rhodopseudomonas palustris CGA009 2690897 NP_947763.1 CDS RPA2421 NC_005296.1 2750691 2751101 D Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis; NADH dehydrogenase 2750691..2751101 Rhodopseudomonas palustris CGA009 2690891 NP_947764.1 CDS RPA2422 NC_005296.1 2751142 2751831 R hypothetical protein complement(2751142..2751831) Rhodopseudomonas palustris CGA009 2690841 NP_947765.1 CDS RPA2423 NC_005296.1 2751955 2752893 D AraC family transcriptional regulator 2751955..2752893 Rhodopseudomonas palustris CGA009 2690800 NP_947766.1 CDS RPA2424 NC_005296.1 2752915 2754342 R agarase complement(2752915..2754342) Rhodopseudomonas palustris CGA009 2688819 NP_947767.1 CDS RPA2425 NC_005296.1 2754356 2755300 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; lipase/esterase complement(2754356..2755300) Rhodopseudomonas palustris CGA009 2688790 NP_947768.1 CDS RPA2426 NC_005296.1 2755533 2756522 D hypothetical protein 2755533..2756522 Rhodopseudomonas palustris CGA009 2690750 NP_947769.1 CDS RPA2427 NC_005296.1 2756723 2757967 R serine protease complement(2756723..2757967) Rhodopseudomonas palustris CGA009 2690702 NP_947770.1 CDS RPA2428 NC_005296.1 2758031 2758351 R hypothetical protein complement(2758031..2758351) Rhodopseudomonas palustris CGA009 2690695 NP_947771.1 CDS aat NC_005296.1 2758475 2759158 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(2758475..2759158) Rhodopseudomonas palustris CGA009 2690664 NP_947772.1 CDS RPA2430 NC_005296.1 2759213 2760640 R hypothetical protein complement(2759213..2760640) Rhodopseudomonas palustris CGA009 2690637 NP_947773.1 CDS RPA2431 NC_005296.1 2760673 2761344 R hypothetical protein complement(2760673..2761344) Rhodopseudomonas palustris CGA009 2690624 NP_947774.1 CDS RPA2432 NC_005296.1 2761477 2762568 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; signal transduction histidine kinase complement(2761477..2762568) Rhodopseudomonas palustris CGA009 2693051 NP_947775.1 CDS RPA2433 NC_005296.1 2762565 2763008 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; chemotaxis protein CheY complement(2762565..2763008) Rhodopseudomonas palustris CGA009 2693047 NP_947776.1 CDS RPA2434 NC_005296.1 2763005 2764537 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; multi-sensor signal transduction histidine kinase complement(2763005..2764537) Rhodopseudomonas palustris CGA009 2689779 NP_947777.1 CDS accC NC_005296.1 2764725 2766077 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(2764725..2766077) Rhodopseudomonas palustris CGA009 2690575 NP_947778.1 CDS accB NC_005296.1 2766195 2766689 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acetyl-CoA carboxylase biotin carboxyl carrier protein complement(2766195..2766689) Rhodopseudomonas palustris CGA009 2693043 NP_947779.1 CDS aroQ2 NC_005296.1 2766728 2767183 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(2766728..2767183) Rhodopseudomonas palustris CGA009 2693019 NP_947780.1 CDS RPA2438 NC_005296.1 2767477 2768148 R hypothetical protein complement(2767477..2768148) Rhodopseudomonas palustris CGA009 2693010 NP_947781.1 CDS RPA2439 NC_005296.1 2768379 2768627 D hypothetical protein 2768379..2768627 Rhodopseudomonas palustris CGA009 2690539 NP_947782.1 CDS RPA2440 NC_005296.1 2768965 2769918 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cation efflux protein 2768965..2769918 Rhodopseudomonas palustris CGA009 2692994 NP_947783.1 CDS RPA2441 NC_005296.1 2769906 2770598 D TetR family transcriptional regulator 2769906..2770598 Rhodopseudomonas palustris CGA009 2692957 NP_947784.1 CDS RPA2442 NC_005296.1 2770683 2771450 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; DSBA oxidoreductase complement(2770683..2771450) Rhodopseudomonas palustris CGA009 2690922 NP_947785.1 CDS RPA2443 NC_005296.1 2771641 2772330 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; antioxidant protein complement(2771641..2772330) Rhodopseudomonas palustris CGA009 2692925 NP_947786.1 CDS RPA2444 NC_005296.1 2772482 2772871 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2772482..2772871) Rhodopseudomonas palustris CGA009 2692881 NP_947787.1 CDS RPA2445 NC_005296.1 2773057 2774484 R peptidase M48 Ste24p complement(2773057..2774484) Rhodopseudomonas palustris CGA009 2688861 NP_947788.1 CDS RPA2446 NC_005296.1 2774592 2775782 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; class I/II aminotransferase 2774592..2775782 Rhodopseudomonas palustris CGA009 2692825 NP_947789.1 CDS RPA2447 NC_005296.1 2775881 2776498 D biotin synthase 2775881..2776498 Rhodopseudomonas palustris CGA009 2692803 NP_947790.1 CDS dctA2 NC_005296.1 2776597 2777934 D C4-dicarboxylic acid transport protein 2776597..2777934 Rhodopseudomonas palustris CGA009 2690526 NP_947791.1 CDS RPA2449 NC_005296.1 2778036 2779055 R hypothetical protein complement(2778036..2779055) Rhodopseudomonas palustris CGA009 2692790 NP_947792.1 CDS rne NC_005296.1 2779169 2782324 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ribonuclease Rne/Rng family complement(2779169..2782324) Rhodopseudomonas palustris CGA009 2692789 NP_947793.1 CDS RPA2451 NC_005296.1 2782905 2784335 D N-acetylmuramoyl-L-alanine amidase 2782905..2784335 Rhodopseudomonas palustris CGA009 2692773 NP_947794.1 CDS RPA2452 NC_005296.1 2784555 2787053 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; penicillin-binding protein 1A 2784555..2787053 Rhodopseudomonas palustris CGA009 2689851 NP_947795.1 CDS prfB NC_005296.1 2787334 2788302 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; peptide chain release factor 2 2787334..2788302 Rhodopseudomonas palustris CGA009 2690494 NP_947796.1 CDS RPA2454 NC_005296.1 2788309 2789202 D dehydrogenase 2788309..2789202 Rhodopseudomonas palustris CGA009 2690479 NP_947797.1 CDS RPA2455 NC_005296.1 2789329 2790699 R peptidase M23B complement(2789329..2790699) Rhodopseudomonas palustris CGA009 2692729 NP_947798.1 CDS RPA2456 NC_005296.1 2790796 2791485 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; bacterioferritin co-migratory protein complement(2790796..2791485) Rhodopseudomonas palustris CGA009 2692692 NP_947799.1 CDS RPA2457 NC_005296.1 2791680 2795402 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2791680..2795402 Rhodopseudomonas palustris CGA009 2688873 NP_947800.1 CDS RPA2458 NC_005296.1 2795551 2796111 R cytochrome B561 complement(2795551..2796111) Rhodopseudomonas palustris CGA009 2688930 NP_947801.1 CDS RPA2459 NC_005296.1 2796332 2797549 R permease complement(2796332..2797549) Rhodopseudomonas palustris CGA009 2688969 NP_947802.1 CDS tyrS NC_005296.1 2797634 2798890 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(2797634..2798890) Rhodopseudomonas palustris CGA009 2689036 NP_947803.1 CDS anmK NC_005296.1 2799048 2800151 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 2799048..2800151 Rhodopseudomonas palustris CGA009 2689018 NP_947804.1 CDS RPA2462 NC_005296.1 2800206 2800853 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2800206..2800853) Rhodopseudomonas palustris CGA009 2692647 NP_947805.1 CDS nifS1 NC_005296.1 2801091 2802263 D class V aminotransferase 2801091..2802263 Rhodopseudomonas palustris CGA009 2692621 NP_947806.1 CDS sufB NC_005296.1 2802346 2803827 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase 2802346..2803827 Rhodopseudomonas palustris CGA009 2692601 NP_947807.1 CDS sufC NC_005296.1 2803960 2804718 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; FeS assembly ATPase SufC 2803960..2804718 Rhodopseudomonas palustris CGA009 2692595 NP_947808.1 CDS sufD NC_005296.1 2804742 2806055 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; FeS assembly protein SufD 2804742..2806055 Rhodopseudomonas palustris CGA009 2692562 NP_947809.1 CDS sufS NC_005296.1 2806052 2807299 D cysteine desulfurase 2806052..2807299 Rhodopseudomonas palustris CGA009 2690474 NP_947810.1 CDS RPA2468 NC_005296.1 2807296 2807664 D hypothetical protein 2807296..2807664 Rhodopseudomonas palustris CGA009 2690446 NP_947811.1 CDS RPA2469 NC_005296.1 2807693 2808088 D lactoylglutathione lyase 2807693..2808088 Rhodopseudomonas palustris CGA009 2690425 NP_947812.1 CDS RPA2470 NC_005296.1 2808218 2808589 D hypothetical protein 2808218..2808589 Rhodopseudomonas palustris CGA009 2692516 NP_947813.1 CDS RPA2471 NC_005296.1 2808744 2810708 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2808744..2810708 Rhodopseudomonas palustris CGA009 2690419 NP_947814.1 CDS RPA2472 NC_005296.1 2810714 2811814 D hypothetical protein 2810714..2811814 Rhodopseudomonas palustris CGA009 2690399 NP_947815.1 CDS RPA2473 NC_005296.1 2811811 2812284 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; translation initiation inhibitor 2811811..2812284 Rhodopseudomonas palustris CGA009 2692484 NP_947816.1 CDS RPA2474 NC_005296.1 2812370 2814040 D o-linked GlcNAc transferase 2812370..2814040 Rhodopseudomonas palustris CGA009 2690367 NP_947817.1 CDS RPA2475 NC_005296.1 2814065 2814661 D TfoX N-terminal 2814065..2814661 Rhodopseudomonas palustris CGA009 2692466 NP_947818.1 CDS RPA2476 NC_005296.1 2814670 2815737 R diguanylate cyclase complement(2814670..2815737) Rhodopseudomonas palustris CGA009 2692454 NP_947819.1 CDS RPA2477 NC_005296.1 2815836 2817254 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ATP-dependent RNA helicase complement(2815836..2817254) Rhodopseudomonas palustris CGA009 2692431 NP_947820.1 CDS RPA2478 NC_005296.1 2817528 2818619 R AraC family transcriptional regulator complement(2817528..2818619) Rhodopseudomonas palustris CGA009 2692417 NP_947821.1 CDS RPA2479 NC_005296.1 2818822 2820561 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methyl-accepting chemotaxis receptor/sensory transducer 2818822..2820561 Rhodopseudomonas palustris CGA009 2692380 NP_947822.1 CDS RPA2480 NC_005296.1 2820739 2822244 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2820739..2822244 Rhodopseudomonas palustris CGA009 2690348 NP_947823.1 CDS RPA2481 NC_005296.1 2822299 2823135 R XRE family transcriptional regulator complement(2822299..2823135) Rhodopseudomonas palustris CGA009 2690295 NP_947824.1 CDS RPA2482 NC_005296.1 2823234 2824139 D epimerase 2823234..2824139 Rhodopseudomonas palustris CGA009 2690293 NP_947825.1 CDS RPA2483 NC_005296.1 2824175 2824552 R hypothetical protein complement(2824175..2824552) Rhodopseudomonas palustris CGA009 2692334 NP_947826.1 CDS RPA2484 NC_005296.1 2824583 2825053 R hypothetical protein complement(2824583..2825053) Rhodopseudomonas palustris CGA009 2692300 NP_947827.1 CDS aqpZ NC_005296.1 2825375 2826097 D porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z 2825375..2826097 Rhodopseudomonas palustris CGA009 2692297 NP_947828.1 CDS parE NC_005296.1 2826143 2828194 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(2826143..2828194) Rhodopseudomonas palustris CGA009 2690231 NP_947829.1 CDS RPA2487 NC_005296.1 2828652 2829182 D DedA family membrane protein 2828652..2829182 Rhodopseudomonas palustris CGA009 2690238 NP_947830.1 CDS RPA2488 NC_005296.1 2829268 2830257 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2829268..2830257 Rhodopseudomonas palustris CGA009 2692275 NP_947831.1 CDS RPA2489 NC_005296.1 2830404 2830949 R hypothetical protein complement(2830404..2830949) Rhodopseudomonas palustris CGA009 2692268 NP_947832.1 CDS RPA2490 NC_005296.1 2831398 2832063 D Citation: Honjo et al. (1990) J. Bact. 172:1783-1790.; hypothetical protein 2831398..2832063 Rhodopseudomonas palustris CGA009 2690215 NP_947833.1 CDS argC NC_005296.1 2832078 2833073 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 2832078..2833073 Rhodopseudomonas palustris CGA009 2692270 NP_947834.1 CDS RPA2492 NC_005296.1 2833129 2833740 D hypothetical protein 2833129..2833740 Rhodopseudomonas palustris CGA009 2692246 NP_947835.1 CDS RPA2493 NC_005296.1 2833995 2835791 D P-methylase 2833995..2835791 Rhodopseudomonas palustris CGA009 2692216 NP_947836.1 CDS RPA2494 NC_005296.1 2836026 2836388 D hypothetical protein 2836026..2836388 Rhodopseudomonas palustris CGA009 2692198 NP_947837.1 CDS RPA2495 NC_005296.1 2836393 2836791 R translation initiation inhibitor complement(2836393..2836791) Rhodopseudomonas palustris CGA009 2692167 NP_947838.1 CDS RPA2496 NC_005296.1 2837138 2837836 R GntR family transcriptional regulator complement(2837138..2837836) Rhodopseudomonas palustris CGA009 2692153 NP_947839.1 CDS RPA2497 NC_005296.1 2838147 2838935 D anion ABC transporter ATP-binding protein 2838147..2838935 Rhodopseudomonas palustris CGA009 2691505 NP_947840.1 CDS RPA2498 NC_005296.1 2838935 2839813 D ABC transporter permease 2838935..2839813 Rhodopseudomonas palustris CGA009 2692102 NP_947841.1 CDS RPA2499 NC_005296.1 2839879 2840856 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter periplasmic protein 2839879..2840856 Rhodopseudomonas palustris CGA009 2690184 NP_947842.1 CDS RPA2500 NC_005296.1 2840927 2842204 D amidase 2840927..2842204 Rhodopseudomonas palustris CGA009 2692033 NP_947843.1 CDS phbC NC_005296.1 2842246 2844051 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; poly(R)-hydroxyalkanoic acid synthase complement(2842246..2844051) Rhodopseudomonas palustris CGA009 2692026 NP_947844.1 CDS RPA2502 NC_005296.1 2844378 2844683 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2844378..2844683 Rhodopseudomonas palustris CGA009 2692011 NP_947845.1 CDS RPA2503 NC_005296.1 2844868 2846088 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; aminotransferase 2844868..2846088 Rhodopseudomonas palustris CGA009 2691339 NP_947846.1 CDS HDH NC_005296.1 2846167 2847492 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 2846167..2847492 Rhodopseudomonas palustris CGA009 2691975 NP_947847.1 CDS glpX NC_005296.1 2847555 2848559 D type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 2847555..2848559 Rhodopseudomonas palustris CGA009 2689161 NP_947848.1 CDS RPA2506 NC_005296.1 2848668 2849111 D acetyltransferase 2848668..2849111 Rhodopseudomonas palustris CGA009 2690165 NP_947849.1 CDS RPA2507 NC_005296.1 2849176 2849901 D haloacid dehalogenase 2849176..2849901 Rhodopseudomonas palustris CGA009 2691942 NP_947850.1 CDS recJ NC_005296.1 2849930 2851867 D single-stranded-DNA-specific exonuclease RecJ 2849930..2851867 Rhodopseudomonas palustris CGA009 2691918 NP_947851.1 CDS RPA2509 NC_005296.1 2852031 2852321 R hypothetical protein complement(2852031..2852321) Rhodopseudomonas palustris CGA009 2691914 NP_947852.1 CDS RPA2510 NC_005296.1 2852406 2853524 R hypothetical protein complement(2852406..2853524) Rhodopseudomonas palustris CGA009 2691893 NP_947853.1 CDS RPA2511 NC_005296.1 2853542 2854771 R lytic murein transglycosylase complement(2853542..2854771) Rhodopseudomonas palustris CGA009 2689164 NP_947854.1 CDS RPA2512 NC_005296.1 2854994 2855974 D similar to YegS from E. coli; lipid kinase 2854994..2855974 Rhodopseudomonas palustris CGA009 2690102 NP_947855.1 CDS efp NC_005296.1 2856053 2856619 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(2856053..2856619) Rhodopseudomonas palustris CGA009 2690077 NP_947856.1 CDS RPA2514 NC_005296.1 2856757 2857812 D lysyl-tRNA synthetase 2856757..2857812 Rhodopseudomonas palustris CGA009 2690050 NP_947857.1 CDS kamA NC_005296.1 2857809 2858900 D Citation: Ruzicka et al. (2000) J. Bact. 182:469-476; hypothetical protein 2857809..2858900 Rhodopseudomonas palustris CGA009 2691872 NP_947858.1 CDS RPA2516 NC_005296.1 2859061 2859321 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2859061..2859321 Rhodopseudomonas palustris CGA009 2690034 NP_947859.1 CDS RPA2517 NC_005296.1 2859349 2859939 R hypothetical protein complement(2859349..2859939) Rhodopseudomonas palustris CGA009 2690010 NP_947860.1 CDS RPA2518 NC_005296.1 2860251 2860388 D hypothetical protein 2860251..2860388 Rhodopseudomonas palustris CGA009 2689742 NP_947861.1 CDS RPA2519 NC_005296.1 2860446 2860673 D hypothetical protein 2860446..2860673 Rhodopseudomonas palustris CGA009 2689850 NP_947862.1 CDS RPA2520 NC_005296.1 2861230 2861799 R hypothetical protein complement(2861230..2861799) Rhodopseudomonas palustris CGA009 2689721 NP_947863.1 CDS RPA2521 NC_005296.1 2862192 2862401 D hypothetical protein 2862192..2862401 Rhodopseudomonas palustris CGA009 2691280 NP_947864.1 CDS RPA2522 NC_005296.1 2862889 2863146 D hypothetical protein 2862889..2863146 Rhodopseudomonas palustris CGA009 2691348 NP_947865.1 CDS RPA2523 NC_005296.1 2863487 2863936 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glyoxalase/bleomycin resistance protein/dioxygenase complement(2863487..2863936) Rhodopseudomonas palustris CGA009 2691830 NP_947866.1 CDS RPA2524 NC_005296.1 2864429 2865190 D Sir2 family ADP ribosyltransferase 2864429..2865190 Rhodopseudomonas palustris CGA009 2691803 NP_947867.1 CDS cspA2 NC_005296.1 2865394 2866101 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cold-shock DNA-binding domain-containing protein 2865394..2866101 Rhodopseudomonas palustris CGA009 2691792 NP_947868.1 CDS RPA2526 NC_005296.1 2866285 2866770 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2866285..2866770 Rhodopseudomonas palustris CGA009 2691757 NP_947869.1 CDS RPA2527 NC_005296.1 2867308 2868930 R DNA-dependent RNA polymerase complement(2867308..2868930) Rhodopseudomonas palustris CGA009 2691734 NP_947870.1 CDS RPA2528 NC_005296.1 2869057 2869569 D hypothetical protein 2869057..2869569 Rhodopseudomonas palustris CGA009 2691402 NP_947871.1 CDS RPA2529 NC_005296.1 2869607 2869996 D hypothetical protein 2869607..2869996 Rhodopseudomonas palustris CGA009 2689783 NP_947872.1 CDS RPA2530 NC_005296.1 2870046 2870819 D hypothetical protein 2870046..2870819 Rhodopseudomonas palustris CGA009 2691725 NP_947873.1 CDS RPA2531 NC_005296.1 2870915 2871193 D hypothetical protein 2870915..2871193 Rhodopseudomonas palustris CGA009 2691687 NP_947874.1 CDS RPA2532 NC_005296.1 2871455 2872216 D hypothetical protein 2871455..2872216 Rhodopseudomonas palustris CGA009 2691249 NP_947875.1 CDS RPA2533 NC_005296.1 2872381 2872800 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2872381..2872800 Rhodopseudomonas palustris CGA009 2691220 NP_947876.1 CDS RPA2534 NC_005296.1 2872797 2873579 D hypothetical protein 2872797..2873579 Rhodopseudomonas palustris CGA009 2691193 NP_947877.1 CDS waaG NC_005296.1 2874172 2875290 D UDP-glucose:(heptosyl) LPS alpha 1,3-glucosyltransferase 2874172..2875290 Rhodopseudomonas palustris CGA009 2691191 NP_947878.1 CDS RPA2536 NC_005296.1 2875224 2876498 R OpgC protein complement(2875224..2876498) Rhodopseudomonas palustris CGA009 2691174 NP_947879.1 CDS RPA2537 NC_005296.1 2876741 2877046 D ETC complex I subunit region 2876741..2877046 Rhodopseudomonas palustris CGA009 2691150 NP_947880.1 CDS RPA2538 NC_005296.1 2877195 2878850 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl-CoA carboxylase subunit beta 2877195..2878850 Rhodopseudomonas palustris CGA009 2691440 NP_947881.1 CDS RPA2539 NC_005296.1 2878864 2880879 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl-CoA carboxylase biotin-carrying subunit 2878864..2880879 Rhodopseudomonas palustris CGA009 2691445 NP_947882.1 CDS hmgL NC_005296.1 2881000 2881905 D Citation: Baltscheffsky et al. (1997) Biochim. Biophys. Acta 1337:113-122; pyruvate carboxyltransferase 2881000..2881905 Rhodopseudomonas palustris CGA009 2691464 NP_947883.1 CDS RPA2541 NC_005296.1 2882000 2883358 R TRAP dicarboxylate family transporter subunit DctM complement(2882000..2883358) Rhodopseudomonas palustris CGA009 2691504 NP_947884.1 CDS RPA2542 NC_005296.1 2883355 2883906 R TRAP dicarboxylate family transporter subunit DctQ complement(2883355..2883906) Rhodopseudomonas palustris CGA009 2691543 NP_947885.1 CDS RPA2543 NC_005296.1 2883903 2884922 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; TRAP dicarboxylate family transporter subunit DctP complement(2883903..2884922) Rhodopseudomonas palustris CGA009 2691592 NP_947886.1 CDS RPA2544 NC_005296.1 2885193 2885432 D hypothetical protein 2885193..2885432 Rhodopseudomonas palustris CGA009 2691604 NP_947887.1 CDS RPA2545 NC_005296.1 2885963 2888956 D outer membrane protein 2885963..2888956 Rhodopseudomonas palustris CGA009 2691092 NP_947888.1 CDS RPA2546 NC_005296.1 2889133 2889591 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; peptidylprolyl isomerase 2889133..2889591 Rhodopseudomonas palustris CGA009 2691078 NP_947889.1 CDS RPA2547 NC_005296.1 2889640 2889981 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2889640..2889981) Rhodopseudomonas palustris CGA009 2691401 NP_947890.1 CDS RPA2548 NC_005296.1 2890202 2891008 D hypothetical protein 2890202..2891008 Rhodopseudomonas palustris CGA009 2689128 NP_947891.1 CDS RPA2549 NC_005296.1 2891005 2891484 D hypothetical protein 2891005..2891484 Rhodopseudomonas palustris CGA009 2691467 NP_947892.1 CDS RPA2550 NC_005296.1 2891485 2892042 R hypothetical protein complement(2891485..2892042) Rhodopseudomonas palustris CGA009 2691593 NP_947893.1 CDS RPA2551 NC_005296.1 2892078 2892521 D hypothetical protein 2892078..2892521 Rhodopseudomonas palustris CGA009 2691555 NP_947894.1 CDS RPA2552 NC_005296.1 2893377 2893697 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2893377..2893697) Rhodopseudomonas palustris CGA009 2691105 NP_947895.1 CDS RPA2553 NC_005296.1 2894171 2899384 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2894171..2899384 Rhodopseudomonas palustris CGA009 2691189 NP_947896.1 CDS RPA2554 NC_005296.1 2899381 2901576 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; penicillin-binding protein 1C 2899381..2901576 Rhodopseudomonas palustris CGA009 2691192 NP_947897.1 CDS RPA2555 NC_005296.1 2901627 2903372 D glycosyl transferase family protein 2901627..2903372 Rhodopseudomonas palustris CGA009 2691253 NP_947898.1 CDS RPA2556 NC_005296.1 2903374 2904222 D PA-phosphatase-like phosphoesterase 2903374..2904222 Rhodopseudomonas palustris CGA009 2691689 NP_947899.1 CDS RPA2557 NC_005296.1 2904286 2905038 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glycosyl transferase family protein 2904286..2905038 Rhodopseudomonas palustris CGA009 2689833 NP_947900.1 CDS RPA2558 NC_005296.1 2905038 2905376 D hypothetical protein 2905038..2905376 Rhodopseudomonas palustris CGA009 2689952 NP_947901.1 CDS metC NC_005296.1 2905539 2906735 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cystathionine beta-lyase complement(2905539..2906735) Rhodopseudomonas palustris CGA009 2689366 NP_947902.1 CDS aapJ-1 NC_005296.1 2907057 2908073 D observed by proteomics; Citation: Walshaw and Poole (1996) Mol. Microbiol. 21:1239-52; ABC transporter periplasmic amino acid binding protein aapJ-1 2907057..2908073 Rhodopseudomonas palustris CGA009 2691758 NP_947903.1 CDS aapQ-1 NC_005296.1 2908094 2909299 D Citation: Walshaw and Poole (1996) Mol. Microbiol. 21:1239-52; polar amino acid ABC transport permease AapQ-1 2908094..2909299 Rhodopseudomonas palustris CGA009 2691763 NP_947904.1 CDS aapM-1 NC_005296.1 2909296 2910801 D Citation: Walshaw and Poole (1996) Mol. Microbiol. 21:1239-52; polar amino acid ABC transport permease AapM-1 2909296..2910801 Rhodopseudomonas palustris CGA009 2691787 NP_947905.1 CDS aapP-1 NC_005296.1 2910817 2911557 D Citation: Walshaw and Poole (1996) Mol. Microbiol. 21:1239-52; observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; amino acid ABC transporter ATP-binding protein 2910817..2911557 Rhodopseudomonas palustris CGA009 2691849 NP_947906.1 CDS RPA2564 NC_005296.1 2911582 2911851 R hypothetical protein complement(2911582..2911851) Rhodopseudomonas palustris CGA009 2689954 NP_947907.1 CDS RPA2565 NC_005296.1 2911997 2912134 R O-acetylserine (thiol) lyase C-terminal portion complement(2911997..2912134) Rhodopseudomonas palustris CGA009 2691343 NP_947908.1 CDS RPA2566 NC_005296.1 2912351 2913934 D EA59 gene protein phage lambda 2912351..2913934 Rhodopseudomonas palustris CGA009 2691594 NP_947909.1 CDS RPA2567 NC_005296.1 2913943 2914782 D EA31 gene protein phage lambda 2913943..2914782 Rhodopseudomonas palustris CGA009 2688973 NP_947910.1 CDS RPA2568 NC_005296.1 2914922 2915959 R CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A complement(2914922..2915959) Rhodopseudomonas palustris CGA009 2691434 NP_947911.1 CDS cfa1 NC_005296.1 2916070 2917299 R cyclopropane-fatty-acyl-phospholipid synthase complement(2916070..2917299) Rhodopseudomonas palustris CGA009 2689557 NP_947912.1 CDS RPA2570 NC_005296.1 2917359 2918204 R hypothetical protein complement(2917359..2918204) Rhodopseudomonas palustris CGA009 2689983 NP_947913.1 CDS RPA2571 NC_005296.1 2918206 2919519 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; NADPH-dependent oxidoreductase complement(2918206..2919519) Rhodopseudomonas palustris CGA009 2689733 NP_947914.1 CDS RPA2572 NC_005296.1 2919954 2921402 D RND efflux system outer membrane lipoprotein NodT 2919954..2921402 Rhodopseudomonas palustris CGA009 2689740 NP_947915.1 CDS RPA2573 NC_005296.1 2921392 2922762 D permease 2921392..2922762 Rhodopseudomonas palustris CGA009 2689768 NP_947916.1 CDS RPA2574 NC_005296.1 2922833 2925964 D acriflavin resistance protein 2922833..2925964 Rhodopseudomonas palustris CGA009 2690009 NP_947917.1 CDS RPA2575 NC_005296.1 2925964 2929071 D acriflavin resistance protein 2925964..2929071 Rhodopseudomonas palustris CGA009 2691862 NP_947918.1 CDS RPA2576 NC_005296.1 2929079 2929810 D hypothetical protein 2929079..2929810 Rhodopseudomonas palustris CGA009 2690064 NP_947919.1 CDS RPA2577 NC_005296.1 2930223 2931692 D alginate o-acetyltransferase AlgI 2930223..2931692 Rhodopseudomonas palustris CGA009 2690117 NP_947920.1 CDS RPA2578 NC_005296.1 2931695 2932828 D alginate o-acetyltransferase AlgJ 2931695..2932828 Rhodopseudomonas palustris CGA009 2690905 NP_947921.1 CDS RPA2579 NC_005296.1 2933211 2933600 R hypothetical protein complement(2933211..2933600) Rhodopseudomonas palustris CGA009 2691929 NP_947922.1 CDS RPA2580 NC_005296.1 2934119 2934784 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; protein-L-isoaspartate(D-aspartate) O-methyltransferase 2934119..2934784 Rhodopseudomonas palustris CGA009 2689158 NP_947923.1 CDS RPA2581 NC_005296.1 2934830 2936386 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; TolC family type I secretion outer membrane protein 2934830..2936386 Rhodopseudomonas palustris CGA009 2691994 NP_947924.1 CDS RPA2582 NC_005296.1 2936679 2937467 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 2936679..2937467 Rhodopseudomonas palustris CGA009 2692031 NP_947925.1 CDS valS NC_005296.1 2937609 2940482 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 2937609..2940482 Rhodopseudomonas palustris CGA009 2690633 NP_947926.1 CDS RPA2584 NC_005296.1 2940486 2940872 D glyoxalase 2940486..2940872 Rhodopseudomonas palustris CGA009 2692021 NP_947927.1 CDS RPA2585 NC_005296.1 2941074 2941634 D hypothetical protein 2941074..2941634 Rhodopseudomonas palustris CGA009 2690182 NP_947928.1 CDS 3mg NC_005296.1 2941820 2942497 R responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase complement(2941820..2942497) Rhodopseudomonas palustris CGA009 2692114 NP_947929.1 CDS lipA2 NC_005296.1 2942590 2943549 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 2942590..2943549 Rhodopseudomonas palustris CGA009 2692125 NP_947930.1 CDS RPA2588 NC_005296.1 2943576 2944049 D cyclase 2943576..2944049 Rhodopseudomonas palustris CGA009 2692154 NP_947931.1 CDS cinA NC_005296.1 2944131 2944751 R competence damage-inducible protein A complement(2944131..2944751) Rhodopseudomonas palustris CGA009 2691010 NP_947932.1 CDS ispD NC_005296.1 2944754 2945950 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(2944754..2945950) Rhodopseudomonas palustris CGA009 2692207 NP_947933.1 CDS nifR3 NC_005296.1 2946224 2947225 D Citation: Foster-Hartnett et al. (1993) Mol. Microbiol. 8:903-914; dihydrouridine synthase TIM-barrel protein NifR3 2946224..2947225 Rhodopseudomonas palustris CGA009 2692188 NP_947934.1 CDS ntrB NC_005296.1 2947222 2948394 D observed by proteomics; Citation: Foster-Hartnett et al. (1993) Mol. Microbiol. 8:903-914; signal transduction histidine kinase nitrogen specific NtrB 2947222..2948394 Rhodopseudomonas palustris CGA009 2692200 NP_947935.1 CDS ntrC NC_005296.1 2948404 2949846 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Fis family transcriptional regulator 2948404..2949846 Rhodopseudomonas palustris CGA009 2692253 NP_947936.1 CDS ntrY NC_005296.1 2950006 2952297 D Citation: Pawlowski et al. (1991) Mol. Gen. Genet. 231:124-38; observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; multi-sensor signal transduction histidine kinase 2950006..2952297 Rhodopseudomonas palustris CGA009 2692211 NP_947937.1 CDS ntrX NC_005296.1 2952314 2953681 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Fis family transcriptional regulator 2952314..2953681 Rhodopseudomonas palustris CGA009 2692262 NP_947938.1 CDS RPA2596 NC_005296.1 2953722 2954579 D catalyzes the transamination of D-amino acids and their alpha-keto acids; D-amino acid aminotransferase 2953722..2954579 Rhodopseudomonas palustris CGA009 2690226 NP_947939.1 CDS hfq NC_005296.1 2954761 2955009 D Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 2954761..2955009 Rhodopseudomonas palustris CGA009 2692283 NP_947940.1 CDS RPA2598 NC_005296.1 2955114 2956388 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; GTP-binding protein HSR1-related 2955114..2956388 Rhodopseudomonas palustris CGA009 2692286 NP_947941.2 CDS gyrA NC_005296.1 2956591 2959332 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 2956591..2959332 Rhodopseudomonas palustris CGA009 2690239 NP_947942.1 CDS RPA2600 NC_005296.1 2959517 2959936 D hypothetical protein 2959517..2959936 Rhodopseudomonas palustris CGA009 2692329 NP_947943.1 CDS coaD NC_005296.1 2960110 2960619 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 2960110..2960619 Rhodopseudomonas palustris CGA009 2692323 NP_947944.1 CDS RPA2602 NC_005296.1 2960636 2961199 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cyclophilin type peptidyl-prolyl cis-trans isomerase 2960636..2961199 Rhodopseudomonas palustris CGA009 2692313 NP_947945.1 CDS RPA2603 NC_005296.1 2961209 2961652 D hypothetical protein 2961209..2961652 Rhodopseudomonas palustris CGA009 2692355 NP_947946.1 CDS RPA2604 NC_005296.1 2961628 2962095 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cyclophilin type peptidyl-prolyl cis-trans isomerase 2961628..2962095 Rhodopseudomonas palustris CGA009 2692346 NP_947947.1 CDS queA NC_005296.1 2962252 2963346 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 2962252..2963346 Rhodopseudomonas palustris CGA009 2690347 NP_947948.1 CDS tgt NC_005296.1 2963343 2964476 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 2963343..2964476 Rhodopseudomonas palustris CGA009 2692361 NP_947949.1 CDS RPA2607 NC_005296.1 2965553 2966176 R transcriptional regulator complement(2965553..2966176) Rhodopseudomonas palustris CGA009 2690336 NP_947950.1 CDS RPA2608 NC_005296.1 2966741 2967694 R sulfonate binding protein complement(2966741..2967694) Rhodopseudomonas palustris CGA009 2692383 NP_947951.1 CDS RPA2609 NC_005296.1 2967856 2968425 R monooxygenase complement(2967856..2968425) Rhodopseudomonas palustris CGA009 2692456 NP_947952.1 CDS ssuB NC_005296.1 2968436 2969281 R Citation: Vermeij et al. (1999) Mol. Microbiol. 32:913-926; aliphatic sulfonate ABC transporter ATP-binding protein complement(2968436..2969281) Rhodopseudomonas palustris CGA009 2692413 NP_947953.1 CDS RPA2611 NC_005296.1 2969286 2970092 R Citation: Van Der Ploeg et al. (1999) J. Biol. Chem. 274:29358-29365; aliphatic sulfonate ABC transporter permease complement(2969286..2970092) Rhodopseudomonas palustris CGA009 2692404 NP_947954.1 CDS msuD NC_005296.1 2970089 2971264 R catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase complement(2970089..2971264) Rhodopseudomonas palustris CGA009 2692478 NP_947955.1 CDS RPA2613 NC_005296.1 2971309 2972256 R ABC transporter aliphatic sulfonate binding protein complement(2971309..2972256) Rhodopseudomonas palustris CGA009 2690402 NP_947956.1 CDS RPA2614 NC_005296.1 2972643 2973920 D hypothetical protein 2972643..2973920 Rhodopseudomonas palustris CGA009 2692483 NP_947957.1 CDS nifH2 NC_005296.1 2973960 2974832 D nitrogenase iron protein 2973960..2974832 Rhodopseudomonas palustris CGA009 2692534 NP_947958.1 CDS RPA2616 NC_005296.1 2974834 2976192 D nitrogenase iron-molybdenum cofactor biosynthesis protein NifE-like protein 2974834..2976192 Rhodopseudomonas palustris CGA009 2692507 NP_947959.1 CDS RPA2617 NC_005296.1 2976189 2977439 D vanadium nitrogenase associated protein N 2976189..2977439 Rhodopseudomonas palustris CGA009 2690481 NP_947960.1 CDS RPA2618 NC_005296.1 2977601 2978587 R sulfonate transport system substrate-binding protein complement(2977601..2978587) Rhodopseudomonas palustris CGA009 2690465 NP_947961.1 CDS RPA2619 NC_005296.1 2978920 2980524 D GMC-type oxidoreductase 2978920..2980524 Rhodopseudomonas palustris CGA009 2690458 NP_947962.1 CDS RPA2620 NC_005296.1 2980614 2980940 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2980614..2980940) Rhodopseudomonas palustris CGA009 2690436 NP_947963.1 CDS RPA2621 NC_005296.1 2980972 2981481 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(2980972..2981481) Rhodopseudomonas palustris CGA009 2692577 NP_947964.1 CDS RPA2622 NC_005296.1 2981510 2982289 R Citation: Beil et al. (1995) Eur. J. Biochem. 229:385-394; sulfonate ABC transporter ATP-binding protein complement(2981510..2982289) Rhodopseudomonas palustris CGA009 2692555 NP_947965.1 CDS RPA2623 NC_005296.1 2982289 2983131 R sulfonate ABC transporter permease complement(2982289..2983131) Rhodopseudomonas palustris CGA009 2692545 NP_947966.1 CDS RPA2624 NC_005296.1 2983255 2984229 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; sulfonate transport system substrate-binding protein complement(2983255..2984229) Rhodopseudomonas palustris CGA009 2692584 NP_947967.1 CDS RPA2625 NC_005296.1 2984782 2985990 R cystathionine or methionine gamma-lyase complement(2984782..2985990) Rhodopseudomonas palustris CGA009 2689042 NP_947968.1 CDS RPA2626 NC_005296.1 2986232 2987266 R hydrolase complement(2986232..2987266) Rhodopseudomonas palustris CGA009 2689044 NP_947969.1 CDS RPA2627 NC_005296.1 2987649 2989346 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; carboxylesterase 2987649..2989346 Rhodopseudomonas palustris CGA009 2689086 NP_947970.1 CDS aapJ-2 NC_005296.1 2989377 2990399 D Citation: Walshaw and Poole (1996) Mol. Microbiol. 21:1239-52; polar amino acid ABC transport substrate-binding protein AapJ-2 2989377..2990399 Rhodopseudomonas palustris CGA009 2691466 NP_947971.1 CDS aapQ-2 NC_005296.1 2990420 2991589 D Citation: Walshaw and Poole (1996) Mol. Microbiol. 21:1239-52; polar amino acid ABC transpor permease AapQ-2 2990420..2991589 Rhodopseudomonas palustris CGA009 2689126 NP_947972.1 CDS aapM-2 NC_005296.1 2991586 2992668 D Citation: Walshaw and Poole (1996) Mol. Microbiol. 21:1239-52; polar amino acid ABC transporter protein AapM-2 2991586..2992668 Rhodopseudomonas palustris CGA009 2690991 NP_947973.1 CDS RPA2631 NC_005296.1 2993216 2994244 D ABC transporter substrate-binding periplasmic protein 2993216..2994244 Rhodopseudomonas palustris CGA009 2692706 NP_947974.1 CDS RPA2632 NC_005296.1 2994255 2995253 D ABC transporter permease 2994255..2995253 Rhodopseudomonas palustris CGA009 2690493 NP_947975.1 CDS RPA2633 NC_005296.1 2995253 2996065 D nitrate ABC transporter ATP-binding protein 2995253..2996065 Rhodopseudomonas palustris CGA009 2690485 NP_947976.1 CDS nifB1 NC_005296.1 2996908 2997804 D nitrogenase iron-molybdenum cofactor biosynthesis protein NifB 2996908..2997804 Rhodopseudomonas palustris CGA009 2690518 NP_947977.1 CDS nifH3 NC_005296.1 2997843 2998712 D nitrogenase reductase NifH subunit 2997843..2998712 Rhodopseudomonas palustris CGA009 2688851 NP_947978.1 CDS NifD2 NC_005296.1 2998778 3000286 D nitrogenase molybdenum-iron protein subunit alpha 2998778..3000286 Rhodopseudomonas palustris CGA009 2692784 NP_947979.1 CDS RPA2637 NC_005296.1 3000298 3001680 D nitrogenase iron-molybdenum protein subunit nifK-like protein 3000298..3001680 Rhodopseudomonas palustris CGA009 2692813 NP_947980.1 CDS RPA2638 NC_005296.1 3001975 3003279 D oxidoreductase 3001975..3003279 Rhodopseudomonas palustris CGA009 2690523 NP_947981.1 CDS RPA2639 NC_005296.1 3003327 3003812 R L-2-amino-thiazoline-4-carboxylic acid hydrolase complement(3003327..3003812) Rhodopseudomonas palustris CGA009 2691055 NP_947982.1 CDS RPA2640 NC_005296.1 3003809 3004531 R isochorismatase hydrolase family protein complement(3003809..3004531) Rhodopseudomonas palustris CGA009 2691041 NP_947983.1 CDS RPA2641 NC_005296.1 3004528 3006129 R ABC transporter oligopeptide-binding protein complement(3004528..3006129) Rhodopseudomonas palustris CGA009 2692832 NP_947984.1 CDS RPA2642 NC_005296.1 3006354 3007244 D LysR family transcriptional regulator 3006354..3007244 Rhodopseudomonas palustris CGA009 2692823 NP_947985.1 CDS RPA2643 NC_005296.1 3007305 3008927 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter ATP-binding protein complement(3007305..3008927) Rhodopseudomonas palustris CGA009 2692856 NP_947986.1 CDS RPA2644 NC_005296.1 3008924 3009754 R ABC transporter permease complement(3008924..3009754) Rhodopseudomonas palustris CGA009 2692847 NP_947987.1 CDS RPA2645 NC_005296.1 3009759 3010736 R ABC transporter permease complement(3009759..3010736) Rhodopseudomonas palustris CGA009 2688826 NP_947988.1 CDS RPA2646 NC_005296.1 3010761 3012377 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter oligopeptide-binding protein complement(3010761..3012377) Rhodopseudomonas palustris CGA009 2692956 NP_947989.1 CDS RPA2647 NC_005296.1 3012547 3013713 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hydrolase complement(3012547..3013713) Rhodopseudomonas palustris CGA009 2693002 NP_947990.1 CDS RPA2648 NC_005296.1 3013743 3014525 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3013743..3014525) Rhodopseudomonas palustris CGA009 2692981 NP_947991.1 CDS RPA2649 NC_005296.1 3015504 3015860 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 3015504..3015860 Rhodopseudomonas palustris CGA009 2693025 NP_947992.1 CDS RPA2650 NC_005296.1 3015857 3016726 R DMT family permease complement(3015857..3016726) Rhodopseudomonas palustris CGA009 2692989 NP_947993.1 CDS RPA2651 NC_005296.1 3016936 3017337 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; endoribonuclease protein synthesis inhibitor 3016936..3017337 Rhodopseudomonas palustris CGA009 2693034 NP_947994.1 CDS RPA2652 NC_005296.1 3017428 3017631 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 3017428..3017631 Rhodopseudomonas palustris CGA009 2690962 NP_947995.1 CDS pucAa NC_005296.1 3017745 3017924 R Citation: Tadros and Waterkamp (1989) EMBO J. 8:1303-1308; light harvesting protein B-800-850 alpha subunit A complement(3017745..3017924) Rhodopseudomonas palustris CGA009 2690946 NP_947996.1 CDS pucBa NC_005296.1 3017950 3018093 R light harvesting protein B-800-850 beta subunit A complement(3017950..3018093) Rhodopseudomonas palustris CGA009 2690607 NP_947997.1 CDS RPA2655 NC_005296.1 3018684 3021518 R Citation: Bhagwat and Keister (1995) Mol. Plant Microbe Interact. 8:366-370; family 2 glycosyl transferase complement(3018684..3021518) Rhodopseudomonas palustris CGA009 2689934 NP_947998.1 CDS RPA2656 NC_005296.1 3021706 3022284 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3021706..3022284) Rhodopseudomonas palustris CGA009 2690699 NP_947999.1 CDS RPA2657 NC_005296.1 3022547 3024181 D observed by proteomics; Citation: Bhagwat et al. (1996) J. Bact. 178:4635-4642; beta (1-6) glucans synthase 3022547..3024181 Rhodopseudomonas palustris CGA009 2690740 NP_948000.1 CDS RPA2658 NC_005296.1 3024595 3025986 R hypothetical protein complement(3024595..3025986) Rhodopseudomonas palustris CGA009 2690795 NP_948001.1 CDS glmU NC_005296.1 3026154 3027512 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 3026154..3027512 Rhodopseudomonas palustris CGA009 2690851 NP_948002.1 CDS glmS NC_005296.1 3027638 3029464 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 3027638..3029464 Rhodopseudomonas palustris CGA009 2690835 NP_948003.1 CDS RPA2661 NC_005296.1 3029723 3030526 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 3029723..3030526 Rhodopseudomonas palustris CGA009 2690830 NP_948004.1 CDS recG NC_005296.1 3030557 3032659 R ATP-dependent DNA helicase complement(3030557..3032659) Rhodopseudomonas palustris CGA009 2690932 NP_948005.1 CDS Mfd NC_005296.1 3033100 3036618 D transcription-repair coupling factor 3033100..3036618 Rhodopseudomonas palustris CGA009 2688841 NP_948006.1 CDS RPA2664 NC_005296.1 3036761 3037993 R hypothetical protein complement(3036761..3037993) Rhodopseudomonas palustris CGA009 2691107 NP_948007.1 CDS RPA2665 NC_005296.1 3038042 3039577 R acid-CoA ligase complement(3038042..3039577) Rhodopseudomonas palustris CGA009 2693555 NP_948008.1 CDS RPA2666 NC_005296.1 3039582 3041462 R family 5 extracellular solute-binding protein complement(3039582..3041462) Rhodopseudomonas palustris CGA009 2693476 NP_948009.1 CDS RPA2667 NC_005296.1 3041681 3042427 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; invasion associated locus B 3041681..3042427 Rhodopseudomonas palustris CGA009 2693515 NP_948010.1 CDS RPA2668 NC_005296.1 3042513 3043187 R hypothetical protein complement(3042513..3043187) Rhodopseudomonas palustris CGA009 2693554 NP_948011.1 CDS RPA2669 NC_005296.1 3043229 3043561 R hemimethylated DNA-binding region complement(3043229..3043561) Rhodopseudomonas palustris CGA009 2693614 NP_948012.1 CDS RPA2670 NC_005296.1 3043684 3044640 D auxin efflux carrier 3043684..3044640 Rhodopseudomonas palustris CGA009 2693306 NP_948013.1 CDS RPA2671 NC_005296.1 3044646 3045842 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(3044646..3045842) Rhodopseudomonas palustris CGA009 2693257 NP_948014.1 CDS RPA2672 NC_005296.1 3045976 3046710 D Citation: Sohlenkamp et al. (2000) J. Biol. Chem. 275:18919-18925; phosphatidylcholine synthase 3045976..3046710 Rhodopseudomonas palustris CGA009 2693173 NP_948015.1 CDS RPA2673 NC_005296.1 3046707 3047429 D hypothetical protein 3046707..3047429 Rhodopseudomonas palustris CGA009 2693196 NP_948016.1 CDS RPA2674 NC_005296.1 3047516 3048490 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; quinone oxidoreductase 3047516..3048490 Rhodopseudomonas palustris CGA009 2693619 NP_948017.1 CDS rimO NC_005296.1 3048669 3049994 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase complement(3048669..3049994) Rhodopseudomonas palustris CGA009 2693161 NP_948018.1 CDS RPA2676 NC_005296.1 3050394 3051308 R LysR family transcriptional regulator complement(3050394..3051308) Rhodopseudomonas palustris CGA009 2693170 NP_948019.1 CDS RPA2677 NC_005296.1 3051410 3052366 D ABC transporter substrate-binding protein 3051410..3052366 Rhodopseudomonas palustris CGA009 2693169 NP_948020.1 CDS RPA2678 NC_005296.1 3052374 3053258 D ABC transporter permease 3052374..3053258 Rhodopseudomonas palustris CGA009 2693406 NP_948021.1 CDS RPA2679 NC_005296.1 3053251 3054069 D transport system ATP-binding protein 3053251..3054069 Rhodopseudomonas palustris CGA009 2693413 NP_948022.1 CDS RPA2680 NC_005296.1 3054071 3054922 D hypothetical protein 3054071..3054922 Rhodopseudomonas palustris CGA009 2693415 NP_948023.1 CDS RPA2681 NC_005296.1 3054938 3055702 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; LamB/YcsF family protein complement(3054938..3055702) Rhodopseudomonas palustris CGA009 2693427 NP_948024.1 CDS uahA NC_005296.1 3055730 3056740 R allophanate hydrolase subunit 2 complement(3055730..3056740) Rhodopseudomonas palustris CGA009 2693430 NP_948025.1 CDS dur1 NC_005296.1 3056737 3057465 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3056737..3057465) Rhodopseudomonas palustris CGA009 2693343 NP_948026.1 CDS RPA2684 NC_005296.1 3057686 3058399 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 3057686..3058399 Rhodopseudomonas palustris CGA009 2693320 NP_948027.1 CDS RPA2685 NC_005296.1 3058412 3058819 D hypothetical protein 3058412..3058819 Rhodopseudomonas palustris CGA009 2693293 NP_948028.1 CDS dapA NC_005296.1 3058948 3059841 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 3058948..3059841 Rhodopseudomonas palustris CGA009 2693240 NP_948029.1 CDS mscL NC_005296.1 3059852 3060331 D homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 3059852..3060331 Rhodopseudomonas palustris CGA009 2693250 NP_948030.1 CDS smpB NC_005296.1 3060369 3060842 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 3060369..3060842 Rhodopseudomonas palustris CGA009 2693226 NP_948031.1 CDS RPA2689 NC_005296.1 3060865 3061443 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; thiol-specific antioxidant-like protein 3060865..3061443 Rhodopseudomonas palustris CGA009 2693227 NP_948032.1 CDS RPA2690 NC_005296.1 3061557 3062231 R uracil-DNA glycosylase complement(3061557..3062231) Rhodopseudomonas palustris CGA009 2693233 NP_948033.1 CDS RPA2691 NC_005296.1 3062237 3062887 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3062237..3062887) Rhodopseudomonas palustris CGA009 2693378 NP_948034.1 CDS rnpO NC_005296.1 3063234 3063626 D Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 3063234..3063626 Rhodopseudomonas palustris CGA009 2693387 NP_948035.1 CDS relA NC_005296.1 3063892 3066174 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; GTP pyrophosphokinase 3063892..3066174 Rhodopseudomonas palustris CGA009 2693478 NP_948036.1 CDS pdxJ NC_005296.1 3066324 3067088 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 3066324..3067088 Rhodopseudomonas palustris CGA009 2693510 NP_948037.1 CDS acpS NC_005296.1 3067085 3067525 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 3067085..3067525 Rhodopseudomonas palustris CGA009 2693522 NP_948038.1 CDS lepB2 NC_005296.1 3067767 3068525 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; peptidase S26A signal peptidase I 3067767..3068525 Rhodopseudomonas palustris CGA009 2693541 NP_948039.1 CDS RPA2697 NC_005296.1 3068522 3069340 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ribonuclease III 3068522..3069340 Rhodopseudomonas palustris CGA009 2693581 NP_948040.1 CDS era NC_005296.1 3069330 3070256 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 3069330..3070256 Rhodopseudomonas palustris CGA009 2693602 NP_948041.1 CDS RPA2699 NC_005296.1 3070253 3070654 D hypothetical protein 3070253..3070654 Rhodopseudomonas palustris CGA009 2693611 NP_948042.1 CDS recO NC_005296.1 3070697 3071449 D involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 3070697..3071449 Rhodopseudomonas palustris CGA009 2693207 NP_948043.1 CDS RPA2701 NC_005296.1 3071489 3072358 R hypothetical protein complement(3071489..3072358) Rhodopseudomonas palustris CGA009 2693328 NP_948044.1 CDS RPA2702 NC_005296.1 3072441 3072953 D MarR family transcriptional regulator 3072441..3072953 Rhodopseudomonas palustris CGA009 2693212 NP_948045.1 CDS parC NC_005296.1 3072963 3075224 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 3072963..3075224 Rhodopseudomonas palustris CGA009 2693291 NP_948046.1 CDS RPA2704 NC_005296.1 3075310 3076740 D Na+ antiporter 3075310..3076740 Rhodopseudomonas palustris CGA009 2693278 NP_948047.1 CDS RPA2705 NC_005296.1 3076754 3077119 R hypothetical protein complement(3076754..3077119) Rhodopseudomonas palustris CGA009 2693260 NP_948048.1 CDS RPA2706 NC_005296.1 3077204 3078577 D Citation: Kehres et al. (2000) Mol. Microbiol. 36:1085-1100; manganese transport protein MntH 3077204..3078577 Rhodopseudomonas palustris CGA009 2693333 NP_948049.1 CDS RPA2707 NC_005296.1 3078637 3079458 R AraC family transcriptional regulator complement(3078637..3079458) Rhodopseudomonas palustris CGA009 2693248 NP_948050.1 CDS RPA2708 NC_005296.1 3079565 3081658 D fusaric acid resistance pump 3079565..3081658 Rhodopseudomonas palustris CGA009 2693246 NP_948051.1 CDS RPA2708a NC_005296.1 3081648 3081863 D hypothetical protein 3081648..3081863 Rhodopseudomonas palustris CGA009 2693183 NP_948052.1 CDS RPA2709 NC_005296.1 3081860 3082762 D FusE-MFP/HlyD family membrane protein 3081860..3082762 Rhodopseudomonas palustris CGA009 2693199 NP_948053.1 CDS RPA2710 NC_005296.1 3082855 3083631 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(3082855..3083631) Rhodopseudomonas palustris CGA009 2693247 NP_948054.1 CDS RPA2711 NC_005296.1 3083700 3084314 R hypothetical protein complement(3083700..3084314) Rhodopseudomonas palustris CGA009 2693252 NP_948055.1 CDS hemB NC_005296.1 3084385 3085437 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(3084385..3085437) Rhodopseudomonas palustris CGA009 2693405 NP_948056.1 CDS RPA2713 NC_005296.1 3085631 3086095 D hypothetical protein 3085631..3086095 Rhodopseudomonas palustris CGA009 2693398 NP_948057.1 CDS RPA2714 NC_005296.1 3086173 3087738 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 3086173..3087738 Rhodopseudomonas palustris CGA009 2693165 NP_948058.1 CDS RPA2715 NC_005296.1 3088091 3088609 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; MarR family transcriptional regulator 3088091..3088609 Rhodopseudomonas palustris CGA009 2693617 NP_948059.1 CDS RPA2716 NC_005296.1 3088824 3089051 D hypothetical protein 3088824..3089051 Rhodopseudomonas palustris CGA009 2693600 NP_948060.1 CDS RPA2717 NC_005296.1 3089068 3089283 D hypothetical protein 3089068..3089283 Rhodopseudomonas palustris CGA009 2693596 NP_948061.1 CDS RPA2718 NC_005296.1 3089301 3089864 D hypothetical protein 3089301..3089864 Rhodopseudomonas palustris CGA009 2693578 NP_948062.1 CDS RPA2719 NC_005296.1 3089902 3090321 D hypothetical protein 3089902..3090321 Rhodopseudomonas palustris CGA009 2693552 NP_948063.1 CDS RPA2720 NC_005296.1 3090492 3091364 R YghU; B2989; one of eight glutathione transferase proteins from E. coli; glutathione S-transferase complement(3090492..3091364) Rhodopseudomonas palustris CGA009 2693388 NP_948064.1 CDS RPA2721 NC_005296.1 3091573 3091842 D hypothetical protein 3091573..3091842 Rhodopseudomonas palustris CGA009 2693384 NP_948065.1 CDS RPA2722 NC_005296.1 3092068 3092691 R MutT domain-containing protein complement(3092068..3092691) Rhodopseudomonas palustris CGA009 2693566 NP_948066.1 CDS RPA2723 NC_005296.1 3092917 3093480 R hypothetical protein complement(3092917..3093480) Rhodopseudomonas palustris CGA009 2693608 NP_948067.1 CDS glyA NC_005296.1 3093944 3095242 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 3093944..3095242 Rhodopseudomonas palustris CGA009 2693455 NP_948068.1 CDS nrdR NC_005296.1 3095345 3095827 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; transcriptional regulator NrdR 3095345..3095827 Rhodopseudomonas palustris CGA009 2693448 NP_948069.1 CDS ribD NC_005296.1 3095824 3096993 D EC_number 1.1.193.-; observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; riboflavin biosynthesis protein RibD 3095824..3096993 Rhodopseudomonas palustris CGA009 2693551 NP_948070.1 CDS ribC NC_005296.1 3097004 3097612 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 3097004..3097612 Rhodopseudomonas palustris CGA009 2693539 NP_948071.1 CDS ribH NC_005296.1 3097743 3098234 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 3097743..3098234 Rhodopseudomonas palustris CGA009 2693505 NP_948072.1 CDS nusB NC_005296.1 3098240 3098764 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 3098240..3098764 Rhodopseudomonas palustris CGA009 2693501 NP_948073.1 CDS thiL NC_005296.1 3098958 3099938 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; thiamine-monophosphate kinase 3098958..3099938 Rhodopseudomonas palustris CGA009 2693500 NP_948074.1 CDS hppA NC_005296.1 3100167 3102287 D pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 3100167..3102287 Rhodopseudomonas palustris CGA009 2693498 NP_948075.1 CDS RPA2732 NC_005296.1 3102449 3102691 D hypothetical protein 3102449..3102691 Rhodopseudomonas palustris CGA009 2693535 NP_948076.1 CDS RPA2733 NC_005296.1 3103016 3103174 D hypothetical protein 3103016..3103174 Rhodopseudomonas palustris CGA009 2693531 NP_948077.1 CDS RPA2734 NC_005296.1 3103212 3104075 D epoxide hydrolase 3103212..3104075 Rhodopseudomonas palustris CGA009 2693529 NP_948078.1 CDS mexC2 NC_005296.1 3104271 3105464 D RND multidrug efflux membrane fusion protein MexC 3104271..3105464 Rhodopseudomonas palustris CGA009 2693527 NP_948079.1 CDS mexD2 NC_005296.1 3105483 3108614 D RND multidrug efflux transporter MexD 3105483..3108614 Rhodopseudomonas palustris CGA009 2693434 NP_948080.1 CDS RPA2737 NC_005296.1 3108667 3109152 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; SmpA/OmlA complement(3108667..3109152) Rhodopseudomonas palustris CGA009 2693433 NP_948081.1 CDS RPA2738 NC_005296.1 3109261 3109797 D ubiquinol-cytochrome C chaperone 3109261..3109797 Rhodopseudomonas palustris CGA009 2693407 NP_948082.1 CDS RPA2739 NC_005296.1 3109815 3110381 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 3109815..3110381 Rhodopseudomonas palustris CGA009 2693431 NP_948083.1 CDS plsX NC_005296.1 3110622 3111683 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 3110622..3111683 Rhodopseudomonas palustris CGA009 2693557 NP_948084.1 CDS fabH NC_005296.1 3111680 3112657 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 3111680..3112657 Rhodopseudomonas palustris CGA009 2693556 NP_948085.1 CDS ihfA NC_005296.1 3112791 3113147 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 3112791..3113147 Rhodopseudomonas palustris CGA009 2693612 NP_948086.1 CDS RPA2743 NC_005296.1 3113162 3113914 D MerR family transcriptional regulator 3113162..3113914 Rhodopseudomonas palustris CGA009 2693338 NP_948087.1 CDS RPA2744 NC_005296.1 3114466 3114693 D hypothetical protein 3114466..3114693 Rhodopseudomonas palustris CGA009 2693259 NP_948088.1 CDS RPA2745 NC_005296.1 3115010 3117304 D ferric siderophore receptor protein 3115010..3117304 Rhodopseudomonas palustris CGA009 2693272 NP_948089.1 CDS RPA2746 NC_005296.1 3117464 3117901 D hypothetical protein 3117464..3117901 Rhodopseudomonas palustris CGA009 2693288 NP_948090.1 CDS RPA2747 NC_005296.1 3118016 3118333 R hypothetical protein complement(3118016..3118333) Rhodopseudomonas palustris CGA009 2693186 NP_948091.1 CDS RPA2748 NC_005296.1 3118557 3119525 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; short-chain dehydrogenase 3118557..3119525 Rhodopseudomonas palustris CGA009 2693340 NP_948092.1 CDS RPA2749 NC_005296.1 3119564 3120349 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 3119564..3120349 Rhodopseudomonas palustris CGA009 2693241 NP_948093.1 CDS RPA2750 NC_005296.1 3120549 3122105 R sugar transferase complement(3120549..3122105) Rhodopseudomonas palustris CGA009 2693229 NP_948094.1 CDS RPA2751 NC_005296.1 3122216 3123391 R group 1 glycosyl transferase complement(3122216..3123391) Rhodopseudomonas palustris CGA009 2693404 NP_948095.1 CDS RPA2752 NC_005296.1 3123858 3125993 D lipopolysaccharide biosynthesis 3123858..3125993 Rhodopseudomonas palustris CGA009 2693379 NP_948096.1 CDS RPA2753 NC_005296.1 3126073 3127266 R hypothetical protein complement(3126073..3127266) Rhodopseudomonas palustris CGA009 2693530 NP_948097.1 CDS RPA2754 NC_005296.1 3127397 3128449 D polysaccharide deacetylase 3127397..3128449 Rhodopseudomonas palustris CGA009 2693528 NP_948098.1 CDS RPA2755 NC_005296.1 3128515 3128997 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; DNA-binding stress protein complement(3128515..3128997) Rhodopseudomonas palustris CGA009 2693559 NP_948099.1 CDS RPA2756 NC_005296.1 3129278 3130285 D hypothetical protein 3129278..3130285 Rhodopseudomonas palustris CGA009 2693567 NP_948100.1 CDS RPA2757 NC_005296.1 3130373 3130585 R hypothetical protein complement(3130373..3130585) Rhodopseudomonas palustris CGA009 2693369 NP_948101.1 CDS RPA2758 NC_005296.1 3130682 3131788 D cytochrome oxidase assembly 3130682..3131788 Rhodopseudomonas palustris CGA009 2693606 NP_948102.1 CDS RPA2759 NC_005296.1 3131802 3132479 R TetR family transcriptional regulator complement(3131802..3132479) Rhodopseudomonas palustris CGA009 2693391 NP_948103.1 CDS RPA2760 NC_005296.1 3132481 3134283 R benzaldehyde lyase complement(3132481..3134283) Rhodopseudomonas palustris CGA009 2693520 NP_948104.1 CDS RPA2761 NC_005296.1 3134350 3134721 D oxidoreductase 3134350..3134721 Rhodopseudomonas palustris CGA009 2693230 NP_948105.1 CDS RPA2762 NC_005296.1 3134810 3135382 R hypothetical protein complement(3134810..3135382) Rhodopseudomonas palustris CGA009 2693516 NP_948106.1 CDS RPA2763 NC_005296.1 3135410 3136690 R catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase complement(3135410..3136690) Rhodopseudomonas palustris CGA009 2693234 NP_948107.1 CDS RPA2764 NC_005296.1 3136785 3137369 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; CoA-binding protein complement(3136785..3137369) Rhodopseudomonas palustris CGA009 2693245 NP_948108.1 CDS RPA2765 NC_005296.1 3137519 3138346 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3137519..3138346) Rhodopseudomonas palustris CGA009 2693243 NP_948109.1 CDS RPA2766 NC_005296.1 3138437 3138865 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; phenylacetic acid degradation-like protein 3138437..3138865 Rhodopseudomonas palustris CGA009 2693238 NP_948110.1 CDS rplM NC_005296.1 3139021 3139485 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 3139021..3139485 Rhodopseudomonas palustris CGA009 2693365 NP_948111.1 CDS rpsI NC_005296.1 3139487 3139969 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 3139487..3139969 Rhodopseudomonas palustris CGA009 2693437 NP_948112.1 CDS RPA2769 NC_005296.1 3140244 3141479 D diguanylate cyclase 3140244..3141479 Rhodopseudomonas palustris CGA009 2693506 NP_948113.1 CDS RPA2770 NC_005296.1 3141558 3141860 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; antibiotic biosynthesis monooxygenase 3141558..3141860 Rhodopseudomonas palustris CGA009 2693325 NP_948114.1 CDS RPA2771 NC_005296.1 3141844 3143010 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3141844..3143010) Rhodopseudomonas palustris CGA009 2693235 NP_948115.1 CDS rlpA2 NC_005296.1 3143257 3144204 D rare lipoprotein A 3143257..3144204 Rhodopseudomonas palustris CGA009 2693499 NP_948116.1 CDS RPA2773 NC_005296.1 3144233 3145183 R epoxide hydrolase complement(3144233..3145183) Rhodopseudomonas palustris CGA009 2693386 NP_948117.1 CDS RPA2774 NC_005296.1 3145328 3146569 D Serine-type D-Ala-D-Ala carboxypeptidase 3145328..3146569 Rhodopseudomonas palustris CGA009 2693491 NP_948118.1 CDS RPA2775 NC_005296.1 3146572 3147264 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 3146572..3147264 Rhodopseudomonas palustris CGA009 2693231 NP_948119.1 CDS RPA2776 NC_005296.1 3147261 3148316 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 3147261..3148316 Rhodopseudomonas palustris CGA009 2693580 NP_948120.1 CDS metG NC_005296.1 3148397 3149941 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 3148397..3149941 Rhodopseudomonas palustris CGA009 2693239 NP_948121.1 CDS RPA2778 NC_005296.1 3149945 3150733 D TatD-related deoxyribonuclease 3149945..3150733 Rhodopseudomonas palustris CGA009 2693281 NP_948122.1 CDS RPA2779 NC_005296.1 3150759 3151562 D hydrolase 3150759..3151562 Rhodopseudomonas palustris CGA009 2693263 NP_948123.1 CDS RPA2780 NC_005296.1 3151757 3153406 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(3151757..3153406) Rhodopseudomonas palustris CGA009 2693255 NP_948124.1 CDS dctQ2 NC_005296.1 3153461 3155344 R TrapT dctQ-M fusion permease dicarboxylate transport complement(3153461..3155344) Rhodopseudomonas palustris CGA009 2693564 NP_948125.1 CDS dctP2 NC_005296.1 3155357 3156376 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; TRAP dicarboxylate family transporter subunit DctP complement(3155357..3156376) Rhodopseudomonas palustris CGA009 2693339 NP_948126.1 CDS RPA2783 NC_005296.1 3156741 3157331 R hypothetical protein complement(3156741..3157331) Rhodopseudomonas palustris CGA009 2693572 NP_948127.1 CDS RPA2784 NC_005296.1 3157632 3158327 D nodulin-like protein 3157632..3158327 Rhodopseudomonas palustris CGA009 2693576 NP_948128.1 CDS RPA2785 NC_005296.1 3158421 3159758 R flavodoxin oxidoreductase complement(3158421..3159758) Rhodopseudomonas palustris CGA009 2693211 NP_948129.1 CDS RPA2786 NC_005296.1 3159849 3160592 R hypothetical protein complement(3159849..3160592) Rhodopseudomonas palustris CGA009 2693512 NP_948130.1 CDS RPA2787 NC_005296.1 3160874 3161932 D signal transduction histidine kinase 3160874..3161932 Rhodopseudomonas palustris CGA009 2693160 NP_948131.1 CDS RPA2788 NC_005296.1 3161963 3162709 R methyltransferase complement(3161963..3162709) Rhodopseudomonas palustris CGA009 2693475 NP_948132.1 CDS phaA NC_005296.1 3163151 3166078 D subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; monovalent cation/H+ antiporter subunit A 3163151..3166078 Rhodopseudomonas palustris CGA009 2693459 NP_948133.1 CDS phaC NC_005296.1 3166069 3166410 D subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C 3166069..3166410 Rhodopseudomonas palustris CGA009 2693261 NP_948134.1 CDS phaD NC_005296.1 3166407 3168041 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D 3166407..3168041 Rhodopseudomonas palustris CGA009 2693605 NP_948135.1 CDS phaE NC_005296.1 3168038 3168526 D subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit E 3168038..3168526 Rhodopseudomonas palustris CGA009 2693418 NP_948136.1 CDS phaF NC_005296.1 3168523 3168804 D subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit F 3168523..3168804 Rhodopseudomonas palustris CGA009 2693601 NP_948137.1 CDS phaG NC_005296.1 3168843 3169172 D Citation: Putkorny et al. (1998) Mol. Microbiol. 28:1091-1101; pH adaptation potassium efflux system component phaG 3168843..3169172 Rhodopseudomonas palustris CGA009 2693268 NP_948138.1 CDS RPA2795 NC_005296.1 3169197 3169979 R hypothetical protein complement(3169197..3169979) Rhodopseudomonas palustris CGA009 2693321 NP_948139.1 CDS glyA2 NC_005296.1 3170000 3171304 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(3170000..3171304) Rhodopseudomonas palustris CGA009 2693327 NP_948140.1 CDS RPA2797 NC_005296.1 3171458 3172909 R Citation: Rossbach et al. (1994) Mol. Gen. Genet. 245:11-24; transcriptional regulator complement(3171458..3172909) Rhodopseudomonas palustris CGA009 2693201 NP_948141.1 CDS BenE NC_005296.1 3173005 3174288 D benzoate membrane transport protein 3173005..3174288 Rhodopseudomonas palustris CGA009 2693292 NP_948142.1 CDS pdxK NC_005296.1 3174285 3175151 D Citation: Yang et al. (1996) FEMS Microbiol. Lett. 141:89-95; pyridoxamine kinase 3174285..3175151 Rhodopseudomonas palustris CGA009 2693295 NP_948143.1 CDS RPA2800 NC_005296.1 3175202 3176011 R hypothetical protein complement(3175202..3176011) Rhodopseudomonas palustris CGA009 2693164 NP_948144.1 CDS RPA2801 NC_005296.1 3176255 3176752 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; triple helix repeat-containing collagen complement(3176255..3176752) Rhodopseudomonas palustris CGA009 2693577 NP_948145.1 CDS RPA2802 NC_005296.1 3176999 3179062 D UvrD/REP helicase 3176999..3179062 Rhodopseudomonas palustris CGA009 2693307 NP_948146.1 CDS RPA2803 NC_005296.1 3179069 3179392 R hypothetical protein complement(3179069..3179392) Rhodopseudomonas palustris CGA009 2693497 NP_948147.1 CDS RPA2804 NC_005296.1 3179465 3180202 R hypothetical protein complement(3179465..3180202) Rhodopseudomonas palustris CGA009 2693258 NP_948148.1 CDS nthA NC_005296.1 3180266 3180907 D Citation: Payne et al. (1997) Biochemistry 36:5447-5454; nitrile hydratase subunit alpha 3180266..3180907 Rhodopseudomonas palustris CGA009 2693440 NP_948149.1 CDS nthB NC_005296.1 3180904 3181560 D Citation: Payne et al. (1997) Biochemistry 36:5447-5454; nitrile hydratase subunit beta 3180904..3181560 Rhodopseudomonas palustris CGA009 2693423 NP_948150.1 CDS RPA2807 NC_005296.1 3181560 3181982 D hypothetical protein 3181560..3181982 Rhodopseudomonas palustris CGA009 2693411 NP_948151.1 CDS RPA2808 NC_005296.1 3182106 3183239 D hypothetical protein 3182106..3183239 Rhodopseudomonas palustris CGA009 2693471 NP_948152.1 CDS RPA2809 NC_005296.1 3183212 3184504 R beta-lactamase complement(3183212..3184504) Rhodopseudomonas palustris CGA009 2693274 NP_948153.1 CDS RPA2810 NC_005296.1 3184586 3185299 R exoenzyme S synthesis protein B complement(3184586..3185299) Rhodopseudomonas palustris CGA009 2693316 NP_948154.1 CDS mazG NC_005296.1 3185416 3186240 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 3185416..3186240 Rhodopseudomonas palustris CGA009 2693610 NP_948155.1 CDS RPA2812 NC_005296.1 3186319 3187614 D HlyC/CorC family transporter 3186319..3187614 Rhodopseudomonas palustris CGA009 2693324 NP_948156.1 CDS RPA2813 NC_005296.1 3187611 3187973 D hypothetical protein 3187611..3187973 Rhodopseudomonas palustris CGA009 2693400 NP_948157.1 CDS ssb NC_005296.1 3188088 3188591 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(3188088..3188591) Rhodopseudomonas palustris CGA009 2693618 NP_948158.1 CDS RPA2815 NC_005296.1 3189020 3189886 D hypothetical protein 3189020..3189886 Rhodopseudomonas palustris CGA009 2693604 NP_948159.1 CDS uvrA NC_005296.1 3190193 3193210 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 3190193..3193210 Rhodopseudomonas palustris CGA009 2693561 NP_948160.1 CDS RPA2817 NC_005296.1 3193267 3194052 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3193267..3194052) Rhodopseudomonas palustris CGA009 2693163 NP_948161.1 CDS RPA2818 NC_005296.1 3194397 3194771 D hypothetical protein 3194397..3194771 Rhodopseudomonas palustris CGA009 2693256 NP_948162.1 CDS RPA2819 NC_005296.1 3194789 3195151 R hypothetical protein complement(3194789..3195151) Rhodopseudomonas palustris CGA009 2693532 NP_948163.1 CDS RPA2820 NC_005296.1 3195154 3195492 R hypothetical protein complement(3195154..3195492) Rhodopseudomonas palustris CGA009 2693521 NP_948164.1 CDS RPA2821 NC_005296.1 3195528 3196304 D ion transporter 3195528..3196304 Rhodopseudomonas palustris CGA009 2693319 NP_948165.1 CDS RPA2822 NC_005296.1 3196342 3196896 D hypothetical protein 3196342..3196896 Rhodopseudomonas palustris CGA009 2693409 NP_948166.1 CDS RPA2823 NC_005296.1 3197176 3197466 D hypothetical protein 3197176..3197466 Rhodopseudomonas palustris CGA009 2693424 NP_948167.1 CDS RPA2824 NC_005296.1 3197599 3198006 D thioesterase 3197599..3198006 Rhodopseudomonas palustris CGA009 2693428 NP_948168.1 CDS RPA2825 NC_005296.1 3198306 3198698 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3198306..3198698) Rhodopseudomonas palustris CGA009 2693417 NP_948169.1 CDS RPA2826 NC_005296.1 3199080 3199976 D hypothetical protein 3199080..3199976 Rhodopseudomonas palustris CGA009 2693279 NP_948170.1 CDS gid NC_005296.1 3200764 3202200 D TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 3200764..3202200 Rhodopseudomonas palustris CGA009 2693574 NP_948171.1 CDS RPA2828 NC_005296.1 3202230 3203102 R phytoene synthase complement(3202230..3203102) Rhodopseudomonas palustris CGA009 2693254 NP_948172.1 CDS RPA2829 NC_005296.1 3203099 3203482 R hypothetical protein complement(3203099..3203482) Rhodopseudomonas palustris CGA009 2693597 NP_948173.1 CDS secF NC_005296.1 3203644 3204762 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(3203644..3204762) Rhodopseudomonas palustris CGA009 2693203 NP_948174.1 CDS secD NC_005296.1 3204788 3206389 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(3204788..3206389) Rhodopseudomonas palustris CGA009 2693179 NP_948175.1 CDS yajC NC_005296.1 3206434 3206871 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; preprotein translocase subunit YajC complement(3206434..3206871) Rhodopseudomonas palustris CGA009 2693224 NP_948176.1 CDS RPA2833 NC_005296.1 3207035 3208051 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 3207035..3208051 Rhodopseudomonas palustris CGA009 2693225 NP_948177.1 CDS RPA2834 NC_005296.1 3208220 3209920 D hypothetical protein 3208220..3209920 Rhodopseudomonas palustris CGA009 2693192 NP_948178.1 CDS RPA2835 NC_005296.1 3209967 3210767 R hypothetical protein complement(3209967..3210767) Rhodopseudomonas palustris CGA009 2693167 NP_948179.1 CDS RPA2836 NC_005296.1 3211602 3212495 D hydrolase 3211602..3212495 Rhodopseudomonas palustris CGA009 2693195 NP_948180.1 CDS lppB NC_005296.1 3212596 3214011 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; peptidase M23B complement(3212596..3214011) Rhodopseudomonas palustris CGA009 2693180 NP_948181.1 CDS pimt2 NC_005296.1 3214132 3214785 R protein-L-isoaspartate O-methyltransferase complement(3214132..3214785) Rhodopseudomonas palustris CGA009 2693171 NP_948182.1 CDS RPA2839 NC_005296.1 3215009 3215383 D chemotaxis protein CheY 3215009..3215383 Rhodopseudomonas palustris CGA009 2693223 NP_948183.1 CDS RPA2840 NC_005296.1 3215392 3215919 R hypothetical protein complement(3215392..3215919) Rhodopseudomonas palustris CGA009 2693172 NP_948184.1 CDS surE NC_005296.1 3216132 3216899 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(3216132..3216899) Rhodopseudomonas palustris CGA009 2693191 NP_948185.1 CDS RPA2844 NC_005296.1 3219531 3220202 R SCP-like extracellular protein complement(3219531..3220202) Rhodopseudomonas palustris CGA009 2693197 NP_948186.1 CDS serS NC_005296.1 3220208 3221512 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(3220208..3221512) Rhodopseudomonas palustris CGA009 2693206 NP_948187.1 CDS RPA2846 NC_005296.1 3221637 3221942 R hypothetical protein complement(3221637..3221942) Rhodopseudomonas palustris CGA009 2693194 NP_948188.1 CDS tatC NC_005296.1 3222083 3222898 R Sec-independent protein translocase TatC complement(3222083..3222898) Rhodopseudomonas palustris CGA009 2693599 NP_948189.1 CDS tatB NC_005296.1 3222895 3223404 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; twin-arginine translocation protein TatB complement(3222895..3223404) Rhodopseudomonas palustris CGA009 2693553 NP_948190.1 CDS tatA NC_005296.1 3223621 3223857 R TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin-arginine translocation protein TatA complement(3223621..3223857) Rhodopseudomonas palustris CGA009 2693563 NP_948191.1 CDS RPA2850 NC_005296.1 3224004 3225302 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3224004..3225302) Rhodopseudomonas palustris CGA009 2693517 NP_948192.1 CDS RPA2851 NC_005296.1 3225323 3226156 R chromosome segregation and condensation protein ScpA complement(3225323..3226156) Rhodopseudomonas palustris CGA009 2693537 NP_948193.1 CDS RPA2852 NC_005296.1 3226153 3227178 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; beta-N-acetylhexosaminidase complement(3226153..3227178) Rhodopseudomonas palustris CGA009 2693524 NP_948194.1 CDS RPA2853 NC_005296.1 3227227 3228849 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3227227..3228849) Rhodopseudomonas palustris CGA009 2693496 NP_948195.1 CDS argS NC_005296.1 3228952 3230745 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(3228952..3230745) Rhodopseudomonas palustris CGA009 2693472 NP_948196.1 CDS RPA2855 NC_005296.1 3230797 3232011 R deoxyguanosinetriphosphate triphosphohydrolase complement(3230797..3232011) Rhodopseudomonas palustris CGA009 2693445 NP_948197.1 CDS RPA2856 NC_005296.1 3232118 3232450 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; HesB/YadR/YfhF 3232118..3232450 Rhodopseudomonas palustris CGA009 2693385 NP_948198.1 CDS RPA2857 NC_005296.1 3232645 3233694 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 3232645..3233694 Rhodopseudomonas palustris CGA009 2693228 NP_948199.1 CDS RPA2858 NC_005296.1 3233691 3234755 D hypothetical protein 3233691..3234755 Rhodopseudomonas palustris CGA009 2693334 NP_948200.1 CDS RPA2859 NC_005296.1 3234782 3235519 R hypothetical protein complement(3234782..3235519) Rhodopseudomonas palustris CGA009 2693326 NP_948201.1 CDS RPA2860 NC_005296.1 3235643 3236602 R hypothetical protein complement(3235643..3236602) Rhodopseudomonas palustris CGA009 2693168 NP_948202.1 CDS xthA2 NC_005296.1 3237166 3238077 D exodeoxyribonuclease III 3237166..3238077 Rhodopseudomonas palustris CGA009 2693237 NP_948203.1 CDS exoR NC_005296.1 3238277 3239098 R exopolysaccharide regulatory protein exoR complement(3238277..3239098) Rhodopseudomonas palustris CGA009 2693215 NP_948204.1 CDS RPA2863 NC_005296.1 3239761 3241182 R E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(3239761..3241182) Rhodopseudomonas palustris CGA009 2693154 NP_948205.1 CDS RPA2864 NC_005296.1 3241258 3242649 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched-chain alpha-keto acid dehydrogenase subunit E2 complement(3241258..3242649) Rhodopseudomonas palustris CGA009 2693416 NP_948206.1 CDS RPA2865 NC_005296.1 3242662 3242958 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3242662..3242958) Rhodopseudomonas palustris CGA009 2693166 NP_948207.1 CDS RPA2866 NC_005296.1 3242963 3244372 R catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase; pyruvate dehydrogenase subunit beta complement(3242963..3244372) Rhodopseudomonas palustris CGA009 2693403 NP_948208.1 CDS RPA2867 NC_005296.1 3244431 3245465 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; pyruvate dehydrogenase E1 subunit alpha complement(3244431..3245465) Rhodopseudomonas palustris CGA009 2693412 NP_948209.1 CDS RPA2868 NC_005296.1 3245618 3245935 R septum formation initiator complement(3245618..3245935) Rhodopseudomonas palustris CGA009 2693422 NP_948210.1 CDS RPA2869 NC_005296.1 3246024 3246584 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; flavin-dependent oxidoreductase complement(3246024..3246584) Rhodopseudomonas palustris CGA009 2689530 NP_948211.1 CDS RPA2870 NC_005296.1 3246724 3247866 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; L-carnitine dehydratase/bile acid-inducible protein F complement(3246724..3247866) Rhodopseudomonas palustris CGA009 2693622 NP_948212.1 CDS RPA2871 NC_005296.1 3247959 3248573 D RhtB family amino acid efflux protein 3247959..3248573 Rhodopseudomonas palustris CGA009 2689941 NP_948213.1 CDS RPA2872 NC_005296.1 3248725 3249528 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3248725..3249528) Rhodopseudomonas palustris CGA009 2689432 NP_948214.1 CDS RPA2873 NC_005296.1 3249613 3250746 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; NADH oxidoreductase complement(3249613..3250746) Rhodopseudomonas palustris CGA009 2689293 NP_948215.1 CDS eno NC_005296.1 3250857 3252140 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(3250857..3252140) Rhodopseudomonas palustris CGA009 2689265 NP_948216.1 CDS RPA2875 NC_005296.1 3252326 3252802 D NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3252326..3252802 Rhodopseudomonas palustris CGA009 2688791 NP_948217.1 CDS mdoG NC_005296.1 3253245 3254750 D involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 3253245..3254750 Rhodopseudomonas palustris CGA009 2690426 NP_948218.1 CDS RPA2877 NC_005296.1 3254738 3256903 D necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 3254738..3256903 Rhodopseudomonas palustris CGA009 2692398 NP_948219.1 CDS RPA2878 NC_005296.1 3256900 3258126 R MDR-like permease complement(3256900..3258126) Rhodopseudomonas palustris CGA009 2690815 NP_948220.1 CDS kdsA NC_005296.1 3258126 3258989 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(3258126..3258989) Rhodopseudomonas palustris CGA009 2690392 NP_948221.1 CDS RPA2880 NC_005296.1 3258986 3259906 R hypothetical protein complement(3258986..3259906) Rhodopseudomonas palustris CGA009 2692166 NP_948222.1 CDS RPA2881 NC_005296.1 3260002 3260532 R hypothetical protein complement(3260002..3260532) Rhodopseudomonas palustris CGA009 2692537 NP_948223.1 CDS RPA2882 NC_005296.1 3260682 3260957 D hypothetical protein 3260682..3260957 Rhodopseudomonas palustris CGA009 2692094 NP_948224.1 CDS RPA2883 NC_005296.1 3260992 3261849 R hypothetical protein complement(3260992..3261849) Rhodopseudomonas palustris CGA009 2688747 NP_948225.1 CDS RPA2884 NC_005296.1 3261980 3262357 D hypothetical protein 3261980..3262357 Rhodopseudomonas palustris CGA009 2692046 NP_948226.1 CDS RPA2885 NC_005296.1 3262467 3262613 D hypothetical protein 3262467..3262613 Rhodopseudomonas palustris CGA009 2691972 NP_948227.1 CDS pyrG NC_005296.1 3262627 3264258 R CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(3262627..3264258) Rhodopseudomonas palustris CGA009 2690596 NP_948228.1 CDS secG NC_005296.1 3264425 3264829 R preprotein translocase subunit SecG complement(3264425..3264829) Rhodopseudomonas palustris CGA009 2690310 NP_948229.1 CDS cbbJ NC_005296.1 3265005 3265841 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; triose-phosphate isomerase complement(3265005..3265841) Rhodopseudomonas palustris CGA009 2691861 NP_948230.1 CDS RPA2889 NC_005296.1 3266039 3267940 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; PpiC-type peptidyl-prolyl cis-trans isomerase 3266039..3267940 Rhodopseudomonas palustris CGA009 2689153 NP_948231.1 CDS trpD NC_005296.1 3267977 3268993 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 3267977..3268993 Rhodopseudomonas palustris CGA009 2689375 NP_948232.1 CDS trpC NC_005296.1 3269058 3269921 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol phosphate synthase 3269058..3269921 Rhodopseudomonas palustris CGA009 2690194 NP_948233.1 CDS moaC NC_005296.1 3269932 3270462 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 3269932..3270462 Rhodopseudomonas palustris CGA009 2689838 NP_948234.1 CDS RPA2893 NC_005296.1 3270500 3273058 D ATPase E1-E2 type 3270500..3273058 Rhodopseudomonas palustris CGA009 2690147 NP_948235.1 CDS RPA2894 NC_005296.1 3273186 3273662 R hypothetical protein complement(3273186..3273662) Rhodopseudomonas palustris CGA009 2691190 NP_948236.1 CDS RPA2895 NC_005296.1 3273901 3274401 D small heat shock protein 3273901..3274401 Rhodopseudomonas palustris CGA009 2691061 NP_948237.1 CDS RPA2896 NC_005296.1 3274570 3274818 D hypothetical protein 3274570..3274818 Rhodopseudomonas palustris CGA009 2693044 NP_948238.1 CDS motB2 NC_005296.1 3274858 3275838 R chemotaxis protein MotB2 complement(3274858..3275838) Rhodopseudomonas palustris CGA009 2690454 NP_948239.1 CDS RPA2898 NC_005296.1 3275975 3276601 D haloacid dehalogenase 3275975..3276601 Rhodopseudomonas palustris CGA009 2692774 NP_948240.1 CDS RPA2899 NC_005296.1 3276632 3277120 D hypothetical protein 3276632..3277120 Rhodopseudomonas palustris CGA009 2692859 NP_948241.1 CDS RPA2900 NC_005296.1 3277268 3277681 D rifampin ADP-ribosyl transferase 3277268..3277681 Rhodopseudomonas palustris CGA009 2692654 NP_948242.1 CDS RPA2901 NC_005296.1 3277725 3278066 R hypothetical protein complement(3277725..3278066) Rhodopseudomonas palustris CGA009 2692579 NP_948243.1 CDS moeA NC_005296.1 3278266 3279477 D molybdenum cofactor biosynthesis protein A 3278266..3279477 Rhodopseudomonas palustris CGA009 2690938 NP_948244.1 CDS lexA NC_005296.1 3279537 3280364 D Represses a number of genes involved in the response to DNA damage; LexA repressor 3279537..3280364 Rhodopseudomonas palustris CGA009 2690942 NP_948245.1 CDS RPA2904 NC_005296.1 3280435 3282702 R ComEC/Rec2-like protein complement(3280435..3282702) Rhodopseudomonas palustris CGA009 2691595 NP_948246.1 CDS glnS NC_005296.1 3282795 3284477 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(3282795..3284477) Rhodopseudomonas palustris CGA009 2692642 NP_948247.1 CDS gltX NC_005296.1 3284639 3286060 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 3284639..3286060 Rhodopseudomonas palustris CGA009 2692777 NP_948248.1 CDS gltA NC_005296.1 3286211 3287515 D type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 3286211..3287515 Rhodopseudomonas palustris CGA009 2690448 NP_948249.1 CDS RPA2908 NC_005296.1 3287610 3288254 R cytidine/deoxycytidylate deaminase complement(3287610..3288254) Rhodopseudomonas palustris CGA009 2691065 NP_948250.1 CDS lpxB NC_005296.1 3288404 3289585 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(3288404..3289585) Rhodopseudomonas palustris CGA009 2691083 NP_948251.1 CDS RPA2910 NC_005296.1 3289582 3290439 R hypothetical protein complement(3289582..3290439) Rhodopseudomonas palustris CGA009 2690060 NP_948252.1 CDS lpxA NC_005296.1 3290458 3291300 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(3290458..3291300) Rhodopseudomonas palustris CGA009 2690058 NP_948253.1 CDS fabZ NC_005296.1 3291309 3291764 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(3291309..3291764) Rhodopseudomonas palustris CGA009 2690250 NP_948254.1 CDS lpxD NC_005296.1 3291764 3292846 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(3291764..3292846) Rhodopseudomonas palustris CGA009 2691714 NP_948255.1 CDS RPA2914 NC_005296.1 3292876 3295401 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; outer membrane protein complement(3292876..3295401) Rhodopseudomonas palustris CGA009 2691777 NP_948256.1 CDS RPA2915 NC_005296.1 3295574 3296725 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; peptidase M50, membrane-associated zinc metallopeptidase complement(3295574..3296725) Rhodopseudomonas palustris CGA009 2689383 NP_948257.1 CDS dxr NC_005296.1 3296771 3297994 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(3296771..3297994) Rhodopseudomonas palustris CGA009 2690571 NP_948258.1 CDS cdsA NC_005296.1 3297999 3298847 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; phosphatidate cytidylyltransferase complement(3297999..3298847) Rhodopseudomonas palustris CGA009 2690655 NP_948259.1 CDS uppS NC_005296.1 3298853 3299611 R catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase complement(3298853..3299611) Rhodopseudomonas palustris CGA009 2692132 NP_948260.1 CDS frr NC_005296.1 3299823 3300383 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(3299823..3300383) Rhodopseudomonas palustris CGA009 2690705 NP_948261.1 CDS pyrH NC_005296.1 3300449 3301165 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(3300449..3301165) Rhodopseudomonas palustris CGA009 2689565 NP_948262.1 CDS tsf NC_005296.1 3301233 3302159 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(3301233..3302159) Rhodopseudomonas palustris CGA009 2692290 NP_948263.1 CDS rpsB NC_005296.1 3302284 3303279 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(3302284..3303279) Rhodopseudomonas palustris CGA009 2692242 NP_948264.1 CDS RPA2923 NC_005296.1 3303514 3306003 R hypothetical protein complement(3303514..3306003) Rhodopseudomonas palustris CGA009 2689979 NP_948265.1 CDS dnaE NC_005296.1 3306165 3309620 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(3306165..3309620) Rhodopseudomonas palustris CGA009 2690853 NP_948266.1 CDS RPA2925 NC_005296.1 3310205 3310714 D hypothetical protein 3310205..3310714 Rhodopseudomonas palustris CGA009 2689949 NP_948267.1 CDS RPA2926 NC_005296.1 3310911 3311609 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; lipoprotein ABC transporter ATP-binding protein complement(3310911..3311609) Rhodopseudomonas palustris CGA009 2689975 NP_948268.1 CDS RPA2927 NC_005296.1 3311621 3312901 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; lipoprotein releasing system transmembrane protein LolC/E family complement(3311621..3312901) Rhodopseudomonas palustris CGA009 2689537 NP_948269.1 CDS proS NC_005296.1 3312981 3314297 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(3312981..3314297) Rhodopseudomonas palustris CGA009 2688742 NP_948270.1 CDS RPA2929 NC_005296.1 3314473 3316053 R hypothetical protein complement(3314473..3316053) Rhodopseudomonas palustris CGA009 2688830 NP_948271.1 CDS RPA2930 NC_005296.1 3316071 3316598 R hypothetical protein complement(3316071..3316598) Rhodopseudomonas palustris CGA009 2692464 NP_948272.1 CDS RPA2931 NC_005296.1 3316598 3317137 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3316598..3317137) Rhodopseudomonas palustris CGA009 2690906 NP_948273.1 CDS RPA2932 NC_005296.1 3317263 3317679 R hypothetical protein complement(3317263..3317679) Rhodopseudomonas palustris CGA009 2689745 NP_948274.1 CDS RPA2933 NC_005296.1 3318298 3318579 R hypothetical protein complement(3318298..3318579) Rhodopseudomonas palustris CGA009 2692390 NP_948275.1 CDS RPA2934 NC_005296.1 3318583 3318987 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glyoxalase/bleomycin resistance protein/dioxygenase complement(3318583..3318987) Rhodopseudomonas palustris CGA009 2690852 NP_948276.1 CDS RPA2935 NC_005296.1 3319029 3320699 R beta-lactamase-like protein complement(3319029..3320699) Rhodopseudomonas palustris CGA009 2690865 NP_948277.1 CDS birA NC_005296.1 3320699 3321505 R catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--acetyl-CoA-carboxylase ligase complement(3320699..3321505) Rhodopseudomonas palustris CGA009 2692381 NP_948278.1 CDS nuoN1 NC_005296.1 3321506 3322945 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N complement(3321506..3322945) Rhodopseudomonas palustris CGA009 2692357 NP_948279.1 CDS nuoM1 NC_005296.1 3322965 3324482 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M complement(3322965..3324482) Rhodopseudomonas palustris CGA009 2692315 NP_948280.1 CDS nuoL1 NC_005296.1 3324483 3326576 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L complement(3324483..3326576) Rhodopseudomonas palustris CGA009 2690806 NP_948281.1 CDS nuoK1 NC_005296.1 3326636 3326947 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K complement(3326636..3326947) Rhodopseudomonas palustris CGA009 2692264 NP_948282.1 CDS nuoJ1 NC_005296.1 3326944 3327582 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J complement(3326944..3327582) Rhodopseudomonas palustris CGA009 2690388 NP_948283.1 CDS nuoI1 NC_005296.1 3327592 3328080 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(3327592..3328080) Rhodopseudomonas palustris CGA009 2692176 NP_948284.1 CDS nuoH1 NC_005296.1 3328088 3329113 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(3328088..3329113) Rhodopseudomonas palustris CGA009 2689947 NP_948285.1 CDS nuoG1 NC_005296.1 3329123 3331207 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G complement(3329123..3331207) Rhodopseudomonas palustris CGA009 2690732 NP_948286.1 CDS nuoF1 NC_005296.1 3331204 3332529 R part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F complement(3331204..3332529) Rhodopseudomonas palustris CGA009 2692110 NP_948287.1 CDS RPA2946 NC_005296.1 3332548 3332763 R hypothetical protein complement(3332548..3332763) Rhodopseudomonas palustris CGA009 2690722 NP_948288.1 CDS nuoE1 NC_005296.1 3332760 3333509 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(3332760..3333509) Rhodopseudomonas palustris CGA009 2689567 NP_948289.1 CDS fkbM NC_005296.1 3333512 3334483 R FkbM family methyltransferase complement(3333512..3334483) Rhodopseudomonas palustris CGA009 2689963 NP_948290.1 CDS nuoD NC_005296.1 3334480 3335688 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(3334480..3335688) Rhodopseudomonas palustris CGA009 2689734 NP_948291.1 CDS nuoC NC_005296.1 3335740 3336354 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C complement(3335740..3336354) Rhodopseudomonas palustris CGA009 2692062 NP_948292.1 CDS nuoB1 NC_005296.1 3336368 3336964 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(3336368..3336964) Rhodopseudomonas palustris CGA009 2692093 NP_948293.1 CDS nuoA1 NC_005296.1 3336976 3337341 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A complement(3336976..3337341) Rhodopseudomonas palustris CGA009 2689548 NP_948294.1 CDS hupA NC_005296.1 3338656 3338967 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; DNA-binding protein HU-alpha 3338656..3338967 Rhodopseudomonas palustris CGA009 2688753 NP_948295.1 CDS pepT NC_005296.1 3339219 3340517 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 3339219..3340517 Rhodopseudomonas palustris CGA009 2689004 NP_948296.1 CDS mex NC_005296.1 3340667 3341911 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; RND efflux membrane fusion protein 3340667..3341911 Rhodopseudomonas palustris CGA009 2692518 NP_948297.1 CDS mexF NC_005296.1 3341940 3345080 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; RND multidrug efflux transporter MexF 3341940..3345080 Rhodopseudomonas palustris CGA009 2690671 NP_948298.1 CDS RPA2957 NC_005296.1 3345579 3348227 D diguanylate cyclase/phosphodiesterase 3345579..3348227 Rhodopseudomonas palustris CGA009 2692018 NP_948299.1 CDS RPA2958 NC_005296.1 3348336 3349376 R DNA-binding protein complement(3348336..3349376) Rhodopseudomonas palustris CGA009 2691981 NP_948300.1 CDS lon NC_005296.1 3349571 3352003 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ATP-dependent protease La complement(3349571..3352003) Rhodopseudomonas palustris CGA009 2692003 NP_948301.1 CDS clpX NC_005296.1 3352313 3353587 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(3352313..3353587) Rhodopseudomonas palustris CGA009 2690351 NP_948302.1 CDS clpP NC_005296.1 3353980 3354618 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; endopeptidase Clp complement(3353980..3354618) Rhodopseudomonas palustris CGA009 2690355 NP_948303.1 CDS tig NC_005296.1 3354932 3356290 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(3354932..3356290) Rhodopseudomonas palustris CGA009 2690550 NP_948304.1 CDS RPA2963 NC_005296.1 3356681 3357154 R hypothetical protein complement(3356681..3357154) Rhodopseudomonas palustris CGA009 2690284 NP_948305.1 CDS RPA2964 NC_005296.1 3357277 3358482 D multicopper oxidase type 1 3357277..3358482 Rhodopseudomonas palustris CGA009 2690520 NP_948306.1 CDS yjeF NC_005296.1 3358531 3360030 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3358531..3360030) Rhodopseudomonas palustris CGA009 2691876 NP_948307.1 CDS glnB NC_005296.1 3360442 3360780 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; nitrogen regulatory protein P-II 3360442..3360780 Rhodopseudomonas palustris CGA009 2689388 NP_948308.1 CDS glnA NC_005296.1 3360870 3362279 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glutamine synthetase type I 3360870..3362279 Rhodopseudomonas palustris CGA009 2692522 NP_948309.1 CDS RPA2968 NC_005296.1 3362578 3363327 D TetR family transcriptional regulator 3362578..3363327 Rhodopseudomonas palustris CGA009 2690513 NP_948310.1 CDS RPA2969 NC_005296.1 3363340 3363951 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 3363340..3363951 Rhodopseudomonas palustris CGA009 2691860 NP_948311.1 CDS bioA NC_005296.1 3364094 3365371 R catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(3364094..3365371) Rhodopseudomonas palustris CGA009 2692512 NP_948312.1 CDS bioD NC_005296.1 3365368 3366006 R DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase complement(3365368..3366006) Rhodopseudomonas palustris CGA009 2691795 NP_948313.1 CDS bioF NC_005296.1 3366003 3367133 R catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase complement(3366003..3367133) Rhodopseudomonas palustris CGA009 2691748 NP_948314.1 CDS RPA2973 NC_005296.1 3367274 3367837 R hypothetical protein complement(3367274..3367837) Rhodopseudomonas palustris CGA009 2692494 NP_948315.1 CDS RPA2974 NC_005296.1 3367926 3369356 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 6-aminohexanoate-cyclic-dimer hydrolase complement(3367926..3369356) Rhodopseudomonas palustris CGA009 2691719 NP_948316.1 CDS serA1 NC_005296.1 3369556 3370545 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; phosphoglycerate dehydrogenase complement(3369556..3370545) Rhodopseudomonas palustris CGA009 2691275 NP_948317.1 CDS RPA2976 NC_005296.1 3370654 3371553 R DMT family permease complement(3370654..3371553) Rhodopseudomonas palustris CGA009 2689889 NP_948318.1 CDS nrd NC_005296.1 3372218 3375991 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 3372218..3375991 Rhodopseudomonas palustris CGA009 2689910 NP_948319.1 CDS RPA2978 NC_005296.1 3376115 3377209 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 3376115..3377209 Rhodopseudomonas palustris CGA009 2690217 NP_948320.1 CDS RPA2979 NC_005296.1 3377373 3377621 D hypothetical protein 3377373..3377621 Rhodopseudomonas palustris CGA009 2690206 NP_948321.1 CDS RPA2980 NC_005296.1 3377728 3378324 R integrase complement(3377728..3378324) Rhodopseudomonas palustris CGA009 2690197 NP_948322.1 CDS RPA2981 NC_005296.1 3378321 3378647 R P2 ISBm2 complement(3378321..3378647) Rhodopseudomonas palustris CGA009 2690113 NP_948323.1 CDS RPA2982 NC_005296.1 3378641 3378907 R hypothetical protein complement(3378641..3378907) Rhodopseudomonas palustris CGA009 2690140 NP_948324.1 CDS RPA2983 NC_005296.1 3379718 3380197 D hypothetical protein 3379718..3380197 Rhodopseudomonas palustris CGA009 2690162 NP_948325.1 CDS RPA2984 NC_005296.1 3380294 3381445 R diguanylate cyclase complement(3380294..3381445) Rhodopseudomonas palustris CGA009 2689936 NP_948326.1 CDS RPA2985 NC_005296.1 3381693 3382379 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 3381693..3382379 Rhodopseudomonas palustris CGA009 2691215 NP_948327.1 CDS RPA2986 NC_005296.1 3383055 3383399 R 5-carboxymethyl-2-hydroxymuconate delta-isomerase complement(3383055..3383399) Rhodopseudomonas palustris CGA009 2691250 NP_948328.1 CDS RPA2987 NC_005296.1 3383593 3384438 D hypothetical protein 3383593..3384438 Rhodopseudomonas palustris CGA009 2691195 NP_948329.1 CDS yrkN NC_005296.1 3384525 3385103 D N-acetyltransferase GCN5 3384525..3385103 Rhodopseudomonas palustris CGA009 2691170 NP_948330.1 CDS RPA2989 NC_005296.1 3385144 3386145 D quinone oxidoreductase 3385144..3386145 Rhodopseudomonas palustris CGA009 2691394 NP_948331.1 CDS RPA2990 NC_005296.1 3386280 3386771 R hypothetical protein complement(3386280..3386771) Rhodopseudomonas palustris CGA009 2691139 NP_948332.1 CDS RPA2991 NC_005296.1 3386893 3387189 R hypothetical protein complement(3386893..3387189) Rhodopseudomonas palustris CGA009 2691144 NP_948333.1 CDS RPA2992 NC_005296.1 3387497 3388180 R hypothetical protein complement(3387497..3388180) Rhodopseudomonas palustris CGA009 2691072 NP_948334.1 CDS RPA2993 NC_005296.1 3388210 3388863 R hypothetical protein complement(3388210..3388863) Rhodopseudomonas palustris CGA009 2693068 NP_948335.1 CDS RPA2994 NC_005296.1 3388995 3389873 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; LysR family transcriptional regulator complement(3388995..3389873) Rhodopseudomonas palustris CGA009 2691014 NP_948336.1 CDS nuoL3 NC_005296.1 3389982 3391553 D NADH-ubiquinone/plastoquinone (complex I) 3389982..3391553 Rhodopseudomonas palustris CGA009 2693052 NP_948337.1 CDS RPA2996 NC_005296.1 3391575 3394001 D hypothetical protein 3391575..3394001 Rhodopseudomonas palustris CGA009 2690986 NP_948338.1 CDS RPA2997 NC_005296.1 3394158 3394445 D hypothetical protein 3394158..3394445 Rhodopseudomonas palustris CGA009 2692984 NP_948339.1 CDS dapA1 NC_005296.1 3394449 3395372 D dihydrodipicolinate synthase 3394449..3395372 Rhodopseudomonas palustris CGA009 2692961 NP_948340.1 CDS ptsN2 NC_005296.1 3395404 3395850 R nitrogen regulatory IIA protein complement(3395404..3395850) Rhodopseudomonas palustris CGA009 2692986 NP_948341.1 CDS kdpE NC_005296.1 3395874 3396557 R two-component osmotic transcriptional regulator KdpE complement(3395874..3396557) Rhodopseudomonas palustris CGA009 2692999 NP_948342.1 CDS kdpD NC_005296.1 3396563 3399286 R two component osmosensitive K+channel and sensor histidine kinase KdpD complement(3396563..3399286) Rhodopseudomonas palustris CGA009 2692905 NP_948343.1 CDS kdpC NC_005296.1 3399332 3399937 R one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C complement(3399332..3399937) Rhodopseudomonas palustris CGA009 2692938 NP_948344.1 CDS kdpB NC_005296.1 3399950 3402079 R One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B complement(3399950..3402079) Rhodopseudomonas palustris CGA009 2692861 NP_948345.1 CDS kdpA NC_005296.1 3402089 3403792 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(3402089..3403792) Rhodopseudomonas palustris CGA009 2692742 NP_948346.1 CDS RPA3005 NC_005296.1 3404124 3404417 D hypothetical protein 3404124..3404417 Rhodopseudomonas palustris CGA009 2692812 NP_948347.1 CDS RPA3006 NC_005296.1 3404723 3405283 D hypothetical protein 3404723..3405283 Rhodopseudomonas palustris CGA009 2692678 NP_948348.1 CDS RPA3007 NC_005296.1 3405291 3406031 D hypothetical protein 3405291..3406031 Rhodopseudomonas palustris CGA009 2692657 NP_948349.1 CDS kup2 NC_005296.1 3406021 3407925 R potassium uptake protein Kup complement(3406021..3407925) Rhodopseudomonas palustris CGA009 2692607 NP_948350.1 CDS pucBc NC_005296.1 3408431 3408586 D light harvesting protein B-800-850 beta subunit C 3408431..3408586 Rhodopseudomonas palustris CGA009 2688839 NP_948351.1 CDS RPA3011 NC_005296.1 3409321 3409959 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3409321..3409959) Rhodopseudomonas palustris CGA009 2689995 NP_948352.1 CDS pucAd NC_005296.1 3410110 3410289 R light harvesting protein B-800-850 alpha subunit D complement(3410110..3410289) Rhodopseudomonas palustris CGA009 2690955 NP_948353.1 CDS pucBd NC_005296.1 3410302 3410457 R light harvesting protein B-800-850 beta subunit D complement(3410302..3410457) Rhodopseudomonas palustris CGA009 2690920 NP_948354.1 CDS RPA3014 NC_005296.1 3410877 3411584 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; LuxR family transcriptional regulator 3410877..3411584 Rhodopseudomonas palustris CGA009 2690960 NP_948355.1 CDS phyB1 NC_005296.1 3411808 3414084 D bacteriophytochrome PhyB 3411808..3414084 Rhodopseudomonas palustris CGA009 2690945 NP_948356.1 CDS phyB2 NC_005296.1 3414088 3416415 D bacteriophytochrome PhyB 3414088..3416415 Rhodopseudomonas palustris CGA009 2692538 NP_948357.1 CDS rphyB NC_005296.1 3416416 3416880 D chemotaxis protein CheY 3416416..3416880 Rhodopseudomonas palustris CGA009 2691640 NP_948358.1 CDS RPA3018 NC_005296.1 3416877 3418013 D response regulator receiver sensor signal transduction histidine kinase 3416877..3418013 Rhodopseudomonas palustris CGA009 2691575 NP_948359.1 CDS mexE NC_005296.1 3421479 3422678 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; RND multidrug efflux membrane fusion protein MexE complement(3421479..3422678) Rhodopseudomonas palustris CGA009 2691511 NP_948360.1 CDS RPA3021 NC_005296.1 3422874 3423461 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; TetR family transcriptional regulator 3422874..3423461 Rhodopseudomonas palustris CGA009 2692683 NP_948361.1 CDS RPA3022 NC_005296.1 3423592 3424758 D diguanylate cyclase 3423592..3424758 Rhodopseudomonas palustris CGA009 2692726 NP_948362.1 CDS RPA3023 NC_005296.1 3424892 3425878 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; aldo/keto reductase 3424892..3425878 Rhodopseudomonas palustris CGA009 2692689 NP_948363.1 CDS RPA3024 NC_005296.1 3425900 3426310 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3425900..3426310) Rhodopseudomonas palustris CGA009 2692799 NP_948364.1 CDS RPA3025 NC_005296.1 3426447 3426773 D hypothetical protein 3426447..3426773 Rhodopseudomonas palustris CGA009 2692840 NP_948365.1 CDS RPA3026 NC_005296.1 3426819 3427469 D abortive infection protein 3426819..3427469 Rhodopseudomonas palustris CGA009 2692870 NP_948366.1 CDS kup1 NC_005296.1 3427479 3429341 R K+ potassium transporter complement(3427479..3429341) Rhodopseudomonas palustris CGA009 2692818 NP_948367.1 CDS RPA3028 NC_005296.1 3429602 3430441 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3429602..3430441) Rhodopseudomonas palustris CGA009 2692919 NP_948368.1 CDS RPA3029 NC_005296.1 3430730 3430912 D hypothetical protein 3430730..3430912 Rhodopseudomonas palustris CGA009 2692975 NP_948369.1 CDS RPA3030 NC_005296.1 3431088 3431384 D hypothetical protein 3431088..3431384 Rhodopseudomonas palustris CGA009 2691004 NP_948370.1 CDS RPA3031 NC_005296.1 3431503 3432126 R acetyltransferase complement(3431503..3432126) Rhodopseudomonas palustris CGA009 2690043 NP_948371.1 CDS RPA3032 NC_005296.1 3432381 3432779 R phenylacetic acid degradation-like protein complement(3432381..3432779) Rhodopseudomonas palustris CGA009 2693075 NP_948372.1 CDS argE NC_005296.1 3432927 3434207 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase complement(3432927..3434207) Rhodopseudomonas palustris CGA009 2691069 NP_948373.1 CDS RPA3034 NC_005296.1 3434340 3434603 D hypothetical protein 3434340..3434603 Rhodopseudomonas palustris CGA009 2691409 NP_948374.1 CDS RPA3035 NC_005296.1 3434632 3435048 R hypothetical protein complement(3434632..3435048) Rhodopseudomonas palustris CGA009 2691109 NP_948375.1 CDS RPA3036 NC_005296.1 3435160 3435408 R hypothetical protein complement(3435160..3435408) Rhodopseudomonas palustris CGA009 2693086 NP_948376.1 CDS RPA3037 NC_005296.1 3436290 3436868 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; CreA family protein complement(3436290..3436868) Rhodopseudomonas palustris CGA009 2691132 NP_948377.1 CDS RPA3038 NC_005296.1 3437018 3438631 D hypothetical protein 3437018..3438631 Rhodopseudomonas palustris CGA009 2690056 NP_948378.1 CDS RPA3039 NC_005296.1 3438785 3439723 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; polysaccharide deacetylase 3438785..3439723 Rhodopseudomonas palustris CGA009 2691171 NP_948379.1 CDS RPA3040 NC_005296.1 3439761 3440324 D hypothetical protein 3439761..3440324 Rhodopseudomonas palustris CGA009 2691146 NP_948380.1 CDS RPA3041 NC_005296.1 3440328 3440777 R hypothetical protein complement(3440328..3440777) Rhodopseudomonas palustris CGA009 2691206 NP_948381.1 CDS mao NC_005296.1 3440872 3443196 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(3440872..3443196) Rhodopseudomonas palustris CGA009 2690067 NP_948382.1 CDS aspS NC_005296.1 3443227 3445002 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(3443227..3445002) Rhodopseudomonas palustris CGA009 2691254 NP_948383.1 CDS RPA3044 NC_005296.1 3445262 3446740 D hypothetical protein 3445262..3446740 Rhodopseudomonas palustris CGA009 2691232 NP_948384.1 CDS rnd NC_005296.1 3446844 3448022 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ribonuclease D 3446844..3448022 Rhodopseudomonas palustris CGA009 2690116 NP_948385.1 CDS RPA3046 NC_005296.1 3448019 3448942 D hypothetical protein 3448019..3448942 Rhodopseudomonas palustris CGA009 2690137 NP_948386.1 CDS RPA3047 NC_005296.1 3448964 3450469 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Ppx/GppA phosphatase complement(3448964..3450469) Rhodopseudomonas palustris CGA009 2690125 NP_948387.1 CDS RPA3048 NC_005296.1 3450482 3452773 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(3450482..3452773) Rhodopseudomonas palustris CGA009 2691694 NP_948388.1 CDS RPA3049 NC_005296.1 3452843 3453532 R hypothetical protein complement(3452843..3453532) Rhodopseudomonas palustris CGA009 2690222 NP_948389.1 CDS RPA3050 NC_005296.1 3453563 3454192 R CDP-alcohol phosphatidyltransferase complement(3453563..3454192) Rhodopseudomonas palustris CGA009 2690190 NP_948390.1 CDS purM NC_005296.1 3454375 3455448 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 3454375..3455448 Rhodopseudomonas palustris CGA009 2691510 NP_948391.1 CDS purN NC_005296.1 3455457 3456110 D phosphoribosylglycinamide formyltransferase 3455457..3456110 Rhodopseudomonas palustris CGA009 2691559 NP_948392.1 CDS cspA3 NC_005296.1 3456174 3456377 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cold-shock DNA-binding domain-containing protein complement(3456174..3456377) Rhodopseudomonas palustris CGA009 2691717 NP_948393.1 CDS RPA3054 NC_005296.1 3456869 3457642 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Crp/Fnr family transcriptional regulator 3456869..3457642 Rhodopseudomonas palustris CGA009 2691698 NP_948394.1 CDS RPA3055 NC_005296.1 3457725 3458546 R TerC family integral membrane protein complement(3457725..3458546) Rhodopseudomonas palustris CGA009 2689154 NP_948395.1 CDS ndk NC_005296.1 3458619 3459041 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(3458619..3459041) Rhodopseudomonas palustris CGA009 2691809 NP_948396.1 CDS RPA3057 NC_005296.1 3459188 3461065 D ABC transporter ATPase 3459188..3461065 Rhodopseudomonas palustris CGA009 2690270 NP_948397.1 CDS RPA3058 NC_005296.1 3461069 3461608 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3461069..3461608) Rhodopseudomonas palustris CGA009 2691882 NP_948398.1 CDS RPA3059 NC_005296.1 3461736 3462188 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(3461736..3462188) Rhodopseudomonas palustris CGA009 2691857 NP_948399.1 CDS RPA3060 NC_005296.1 3462199 3463701 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(3462199..3463701) Rhodopseudomonas palustris CGA009 2690512 NP_948400.1 CDS RPA3061 NC_005296.1 3464110 3465276 D permease YjgP/YjgQ 3464110..3465276 Rhodopseudomonas palustris CGA009 2691927 NP_948401.1 CDS RPA3062 NC_005296.1 3465290 3466375 D permease YjgP/YjgQ 3465290..3466375 Rhodopseudomonas palustris CGA009 2690554 NP_948402.1 CDS RPA3063 NC_005296.1 3466375 3468888 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; organic solvent tolerance protein 3466375..3468888 Rhodopseudomonas palustris CGA009 2690311 NP_948403.1 CDS RPA3064 NC_005296.1 3468967 3469893 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 3468967..3469893 Rhodopseudomonas palustris CGA009 2690600 NP_948404.1 CDS pdxA NC_005296.1 3469954 3470967 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 3469954..3470967 Rhodopseudomonas palustris CGA009 2690551 NP_948405.1 CDS ksgA NC_005296.1 3470964 3471827 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 3470964..3471827 Rhodopseudomonas palustris CGA009 2691983 NP_948406.1 CDS RPA3067 NC_005296.1 3471844 3472902 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; NAD-dependent alcohol dehydrogenase 3471844..3472902 Rhodopseudomonas palustris CGA009 2691999 NP_948407.1 CDS RPA3068 NC_005296.1 3472944 3474239 D 28% identity with Bradyrhizobium japonicum Bll4089 protein; hypothetical protein 3472944..3474239 Rhodopseudomonas palustris CGA009 2692025 NP_948408.1 CDS gmk NC_005296.1 3474243 3474905 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(3474243..3474905) Rhodopseudomonas palustris CGA009 2689057 NP_948409.1 CDS RPA3070 NC_005296.1 3474908 3475795 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3474908..3475795) Rhodopseudomonas palustris CGA009 2690663 NP_948410.1 CDS RPA3071 NC_005296.1 3475897 3477153 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; aminodeoxychorismate lyase complement(3475897..3477153) Rhodopseudomonas palustris CGA009 2690646 NP_948411.1 CDS fabF NC_005296.1 3477356 3478621 R FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(3477356..3478621) Rhodopseudomonas palustris CGA009 2691344 NP_948412.1 CDS acpP NC_005296.1 3478718 3478957 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(3478718..3478957) Rhodopseudomonas palustris CGA009 2692052 NP_948413.1 CDS fabG2 NC_005296.1 3479262 3479999 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 3-oxoacyl-(acyl-carrier-protein) reductase complement(3479262..3479999) Rhodopseudomonas palustris CGA009 2692037 NP_948414.1 CDS fabD NC_005296.1 3480019 3480978 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; malonyl CoA-ACP transacylase complement(3480019..3480978) Rhodopseudomonas palustris CGA009 2689712 NP_948415.1 CDS RPA3076 NC_005296.1 3481244 3482593 D diguanylate cyclase 3481244..3482593 Rhodopseudomonas palustris CGA009 2689731 NP_948416.1 CDS rpsF NC_005296.1 3482765 3483241 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 3482765..3483241 Rhodopseudomonas palustris CGA009 2690703 NP_948417.1 CDS rpsR NC_005296.1 3483247 3483486 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 3483247..3483486 Rhodopseudomonas palustris CGA009 2690726 NP_948418.1 CDS RPA3079 NC_005296.1 3483613 3484563 D hypothetical protein 3483613..3484563 Rhodopseudomonas palustris CGA009 2690761 NP_948419.1 CDS rplI NC_005296.1 3484599 3485186 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 3484599..3485186 Rhodopseudomonas palustris CGA009 2692194 NP_948420.1 CDS RPA3081 NC_005296.1 3485351 3486322 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3485351..3486322) Rhodopseudomonas palustris CGA009 2690394 NP_948421.1 CDS cfa2 NC_005296.1 3486581 3487831 D cyclopropane-fatty-acyl-phospholipid synthase 3486581..3487831 Rhodopseudomonas palustris CGA009 2689976 NP_948422.1 CDS RPA3083 NC_005296.1 3487853 3488050 R hypothetical protein complement(3487853..3488050) Rhodopseudomonas palustris CGA009 2691697 NP_948423.1 CDS dnaB NC_005296.1 3488450 3489946 D unwinds double stranded DNA; replicative DNA helicase 3488450..3489946 Rhodopseudomonas palustris CGA009 2688811 NP_948424.1 CDS RPA3085 NC_005296.1 3490014 3491255 D alanine racemase 3490014..3491255 Rhodopseudomonas palustris CGA009 2692243 NP_948425.1 CDS RPA3086 NC_005296.1 3491385 3491642 R hypothetical protein complement(3491385..3491642) Rhodopseudomonas palustris CGA009 2692327 NP_948426.1 CDS RPA3087 NC_005296.1 3491639 3493276 R hypothetical protein complement(3491639..3493276) Rhodopseudomonas palustris CGA009 2690842 NP_948427.1 CDS RPA3088 NC_005296.1 3493736 3494128 R hypothetical protein complement(3493736..3494128) Rhodopseudomonas palustris CGA009 2690808 NP_948428.1 CDS RadA NC_005296.1 3494276 3495733 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 3494276..3495733 Rhodopseudomonas palustris CGA009 2692375 NP_948429.1 CDS RPA3090 NC_005296.1 3495947 3496582 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; colicin V production protein 3495947..3496582 Rhodopseudomonas palustris CGA009 2692348 NP_948430.1 CDS purF NC_005296.1 3496606 3498135 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 3496606..3498135 Rhodopseudomonas palustris CGA009 2690904 NP_948431.1 CDS RPA3092 NC_005296.1 3498265 3499008 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; oxidoreductase 3498265..3499008 Rhodopseudomonas palustris CGA009 2690406 NP_948432.1 CDS RPA3093 NC_005296.1 3499092 3500318 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter urea/short-chain binding protein 3499092..3500318 Rhodopseudomonas palustris CGA009 2690919 NP_948433.1 CDS RPA3094 NC_005296.1 3500339 3501625 R major facilitator transporter complement(3500339..3501625) Rhodopseudomonas palustris CGA009 2690900 NP_948434.1 CDS engA NC_005296.1 3501622 3503001 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(3501622..3503001) Rhodopseudomonas palustris CGA009 2692468 NP_948435.1 CDS RPA3096 NC_005296.1 3503075 3503626 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3503075..3503626) Rhodopseudomonas palustris CGA009 2692474 NP_948436.1 CDS RPA3097 NC_005296.1 3503672 3504361 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3503672..3504361) Rhodopseudomonas palustris CGA009 2689764 NP_948437.1 CDS panB NC_005296.1 3504491 3505315 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(3504491..3505315) Rhodopseudomonas palustris CGA009 2693138 NP_948438.1 CDS RPA3099 NC_005296.1 3505318 3505902 R NnrU family protein complement(3505318..3505902) Rhodopseudomonas palustris CGA009 2689236 NP_948439.1 CDS RPA3100 NC_005296.1 3506040 3507044 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 3506040..3507044 Rhodopseudomonas palustris CGA009 2689216 NP_948440.1 CDS RPA3101 NC_005296.1 3507093 3507578 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3507093..3507578) Rhodopseudomonas palustris CGA009 2689341 NP_948441.1 CDS RPA3102 NC_005296.1 3507682 3507948 R hypothetical protein complement(3507682..3507948) Rhodopseudomonas palustris CGA009 2689286 NP_948442.1 CDS RPA3103 NC_005296.1 3508623 3508823 R hypothetical protein complement(3508623..3508823) Rhodopseudomonas palustris CGA009 2693096 NP_948443.1 CDS gatB NC_005296.1 3509284 3510768 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(3509284..3510768) Rhodopseudomonas palustris CGA009 2689870 NP_948444.1 CDS RPA3105 NC_005296.1 3510864 3512249 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; patatin-like phospholipase domain-containing protein complement(3510864..3512249) Rhodopseudomonas palustris CGA009 2689703 NP_948445.1 CDS RPA3106 NC_005296.1 3512391 3513497 R signal transduction histidine kinase complement(3512391..3513497) Rhodopseudomonas palustris CGA009 2689301 NP_948446.1 CDS gatA NC_005296.1 3513574 3515052 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(3513574..3515052) Rhodopseudomonas palustris CGA009 2689357 NP_948447.1 CDS RPA3108 NC_005296.1 3515232 3515519 D hypothetical protein 3515232..3515519 Rhodopseudomonas palustris CGA009 2689576 NP_948448.1 CDS RPA3109 NC_005296.1 3515467 3515751 D hypothetical protein 3515467..3515751 Rhodopseudomonas palustris CGA009 2689500 NP_948449.1 CDS RPA3110 NC_005296.1 3515755 3515961 R hypothetical protein complement(3515755..3515961) Rhodopseudomonas palustris CGA009 2689678 NP_948450.1 CDS gatC NC_005296.1 3515973 3516260 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(3515973..3516260) Rhodopseudomonas palustris CGA009 2689663 NP_948451.1 CDS RPA3112 NC_005296.1 3516348 3517424 R 2-nitropropane dioxygenase complement(3516348..3517424) Rhodopseudomonas palustris CGA009 2689222 NP_948452.1 CDS RPA3113 NC_005296.1 3517583 3518065 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 3517583..3518065 Rhodopseudomonas palustris CGA009 2693130 NP_948453.1 CDS RPA3114 NC_005296.1 3518087 3518473 D SecC motif-containing protein 3518087..3518473 Rhodopseudomonas palustris CGA009 2689290 NP_948454.1 CDS RPA3115 NC_005296.1 3518600 3520285 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl-CoA dehydrogenase complement(3518600..3520285) Rhodopseudomonas palustris CGA009 2689320 NP_948455.1 CDS ipdC NC_005296.1 3520331 3521962 R indole-3-pyruvate decarboxylase complement(3520331..3521962) Rhodopseudomonas palustris CGA009 2689503 NP_948456.1 CDS pyrB NC_005296.1 3522153 3523106 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 3522153..3523106 Rhodopseudomonas palustris CGA009 2689093 NP_948457.1 CDS pyr NC_005296.1 3523126 3524436 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 3523126..3524436 Rhodopseudomonas palustris CGA009 2689316 NP_948458.1 CDS RPA3119 NC_005296.1 3524580 3525191 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 3524580..3525191 Rhodopseudomonas palustris CGA009 2689419 NP_948459.1 CDS DprA NC_005296.1 3525318 3526460 D DNA processing protein DprA 3525318..3526460 Rhodopseudomonas palustris CGA009 2689531 NP_948460.1 CDS RPA3121 NC_005296.1 3526551 3527963 D alginate o-acetyltransferase AlgI 3526551..3527963 Rhodopseudomonas palustris CGA009 2693134 NP_948461.1 CDS RPA3122 NC_005296.1 3527968 3529158 D hypothetical protein 3527968..3529158 Rhodopseudomonas palustris CGA009 2689411 NP_948462.1 CDS RPA3123 NC_005296.1 3529411 3529704 R hypothetical protein complement(3529411..3529704) Rhodopseudomonas palustris CGA009 2689240 NP_948463.1 CDS TopA NC_005296.1 3529873 3532608 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 3529873..3532608 Rhodopseudomonas palustris CGA009 2688774 NP_948464.1 CDS RNR NC_005296.1 3532611 3534956 D ribonuclease R 3532611..3534956 Rhodopseudomonas palustris CGA009 2689303 NP_948465.1 CDS RPA3126 NC_005296.1 3534956 3535384 D hypothetical protein 3534956..3535384 Rhodopseudomonas palustris CGA009 2689696 NP_948466.1 CDS RPA3127 NC_005296.1 3535454 3536209 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; NUDIX hydrolase 3535454..3536209 Rhodopseudomonas palustris CGA009 2689807 NP_948467.1 CDS RPA3128 NC_005296.1 3536244 3537392 R transport protein complement(3536244..3537392) Rhodopseudomonas palustris CGA009 2689495 NP_948468.1 CDS rpmG NC_005296.1 3537789 3537956 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 3537789..3537956 Rhodopseudomonas palustris CGA009 2689660 NP_948469.1 CDS RPA3130 NC_005296.1 3538223 3538606 R XRE family transcriptional regulator complement(3538223..3538606) Rhodopseudomonas palustris CGA009 2689632 NP_948470.1 CDS RPA3131 NC_005296.1 3538617 3538934 R hypothetical protein complement(3538617..3538934) Rhodopseudomonas palustris CGA009 2689697 NP_948471.1 CDS pleD NC_005296.1 3538970 3540343 R involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; response regulator PleD complement(3538970..3540343) Rhodopseudomonas palustris CGA009 2689355 NP_948472.1 CDS RPA3133 NC_005296.1 3540354 3540719 R chemotaxis protein CheY complement(3540354..3540719) Rhodopseudomonas palustris CGA009 2689408 NP_948473.1 CDS RPA3134 NC_005296.1 3540845 3541144 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 3540845..3541144 Rhodopseudomonas palustris CGA009 2691655 NP_948474.1 CDS dinP NC_005296.1 3541141 3542436 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 3541141..3542436 Rhodopseudomonas palustris CGA009 2689592 NP_948475.1 CDS RPA3136 NC_005296.1 3542561 3543427 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3542561..3543427) Rhodopseudomonas palustris CGA009 2689440 NP_948476.1 CDS RPA3137 NC_005296.1 3543689 3544168 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; endoribonuclease L-PSP 3543689..3544168 Rhodopseudomonas palustris CGA009 2688847 NP_948477.1 CDS RPA3138 NC_005296.1 3544187 3544933 D glycerophosphoryl diester phosphodiesterase 3544187..3544933 Rhodopseudomonas palustris CGA009 2689195 NP_948478.1 CDS RPA3139 NC_005296.1 3544936 3546255 D hypothetical protein 3544936..3546255 Rhodopseudomonas palustris CGA009 2689309 NP_948479.1 CDS RPA3140 NC_005296.1 3546263 3546733 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; histidine triad (HIT) protein 3546263..3546733 Rhodopseudomonas palustris CGA009 2689237 NP_948480.1 CDS RPA3141 NC_005296.1 3546739 3547200 R hypothetical protein complement(3546739..3547200) Rhodopseudomonas palustris CGA009 2689194 NP_948481.1 CDS RPA3142 NC_005296.1 3547249 3547593 R hypothetical protein complement(3547249..3547593) Rhodopseudomonas palustris CGA009 2689450 NP_948482.1 CDS RPA3143 NC_005296.1 3547590 3548333 R hypothetical protein complement(3547590..3548333) Rhodopseudomonas palustris CGA009 2689577 NP_948483.1 CDS RPA3144 NC_005296.1 3548486 3548845 D hypothetical protein 3548486..3548845 Rhodopseudomonas palustris CGA009 2689867 NP_948484.1 CDS RPA3145 NC_005296.1 3548862 3549977 R transglycosylase SLT domain-containing protein complement(3548862..3549977) Rhodopseudomonas palustris CGA009 2689347 NP_948485.1 CDS RPA3146 NC_005296.1 3550605 3552380 D hypothetical protein 3550605..3552380 Rhodopseudomonas palustris CGA009 2689668 NP_948486.1 CDS clpA NC_005296.1 3552454 3554838 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; endopeptidase Clp ATP-binding subunit A complement(3552454..3554838) Rhodopseudomonas palustris CGA009 2691375 NP_948487.1 CDS clpS NC_005296.1 3555032 3555430 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS complement(3555032..3555430) Rhodopseudomonas palustris CGA009 2689254 NP_948488.1 CDS RPA3149 NC_005296.1 3555834 3557201 D hypothetical protein 3555834..3557201 Rhodopseudomonas palustris CGA009 2689816 NP_948489.1 CDS RPA3150 NC_005296.1 3557558 3559315 D Serine-type D-Ala-D-Ala carboxypeptidase 3557558..3559315 Rhodopseudomonas palustris CGA009 2688850 NP_948490.1 CDS RPA3151 NC_005296.1 3559644 3560372 R heat shock protein DnaJ N-terminal complement(3559644..3560372) Rhodopseudomonas palustris CGA009 2689510 NP_948491.1 CDS RPA3152 NC_005296.1 3560428 3561168 R hypothetical protein complement(3560428..3561168) Rhodopseudomonas palustris CGA009 2689622 NP_948492.1 CDS RPA3153 NC_005296.1 3561248 3562078 R hypothetical protein complement(3561248..3562078) Rhodopseudomonas palustris CGA009 2689321 NP_948493.1 CDS RPA3154 NC_005296.1 3562350 3563273 R chromosome partitioning protein ParA complement(3562350..3563273) Rhodopseudomonas palustris CGA009 2688773 NP_948494.1 CDS panC NC_005296.1 3563540 3564391 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 3563540..3564391 Rhodopseudomonas palustris CGA009 2689631 NP_948495.1 CDS RPA3156 NC_005296.1 3564418 3564837 R hypothetical protein complement(3564418..3564837) Rhodopseudomonas palustris CGA009 2689201 NP_948496.1 CDS RPA3157 NC_005296.1 3564876 3565910 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3564876..3565910) Rhodopseudomonas palustris CGA009 2689706 NP_948497.1 CDS RPA3158 NC_005296.1 3566090 3566281 R hypothetical protein complement(3566090..3566281) Rhodopseudomonas palustris CGA009 2689182 NP_948498.1 CDS RPA3159 NC_005296.1 3566494 3567150 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glutathione S-transferase complement(3566494..3567150) Rhodopseudomonas palustris CGA009 2689448 NP_948499.1 CDS RPA3160 NC_005296.1 3567559 3568353 R hypothetical protein complement(3567559..3568353) Rhodopseudomonas palustris CGA009 2689434 NP_948500.1 CDS yafB NC_005296.1 3568428 3569261 R 2,5-didehydrogluconate reductase complement(3568428..3569261) Rhodopseudomonas palustris CGA009 2689615 NP_948501.1 CDS RPA3162 NC_005296.1 3569316 3569681 R XRE family transcriptional regulator complement(3569316..3569681) Rhodopseudomonas palustris CGA009 2689611 NP_948502.1 CDS mgtE NC_005296.1 3569726 3571147 R magnesium transporter complement(3569726..3571147) Rhodopseudomonas palustris CGA009 2689799 NP_948503.1 CDS RPA3164 NC_005296.1 3571310 3572113 D polysaccharide deacetylase 3571310..3572113 Rhodopseudomonas palustris CGA009 2689513 NP_948504.1 CDS RPA3165 NC_005296.1 3572197 3573570 D polysaccharide deacetylase 3572197..3573570 Rhodopseudomonas palustris CGA009 2691663 NP_948505.1 CDS RPA3166 NC_005296.1 3573642 3574085 D hypothetical protein 3573642..3574085 Rhodopseudomonas palustris CGA009 2689324 NP_948506.1 CDS RPA3167 NC_005296.1 3574085 3574546 D hypothetical protein 3574085..3574546 Rhodopseudomonas palustris CGA009 2693113 NP_948507.1 CDS RPA3168 NC_005296.1 3574819 3575061 R hypothetical protein complement(3574819..3575061) Rhodopseudomonas palustris CGA009 2689526 NP_948508.1 CDS lipB NC_005296.1 3575128 3575865 D lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 3575128..3575865 Rhodopseudomonas palustris CGA009 2691386 NP_948509.1 CDS RPA3170 NC_005296.1 3576134 3578755 D diguanylate cyclase/phosphodiesterase 3576134..3578755 Rhodopseudomonas palustris CGA009 2689243 NP_948510.1 CDS RPA3171 NC_005296.1 3578780 3579211 R hypothetical protein complement(3578780..3579211) Rhodopseudomonas palustris CGA009 2689188 NP_948511.1 CDS RPA3172 NC_005296.1 3579317 3580165 D LysR family transcriptional regulator 3579317..3580165 Rhodopseudomonas palustris CGA009 2689690 NP_948512.1 CDS RPA3173 NC_005296.1 3580184 3580483 R catalyzes the hydrolysis of acylphosphate; acylphosphatase complement(3580184..3580483) Rhodopseudomonas palustris CGA009 2689610 NP_948513.1 CDS RPA3174 NC_005296.1 3580483 3581349 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3580483..3581349) Rhodopseudomonas palustris CGA009 2689479 NP_948514.1 CDS RPA3175 NC_005296.1 3581356 3583371 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; carbamoyl-phosphate synthase L chain ATP-binding complement(3581356..3583371) Rhodopseudomonas palustris CGA009 2688876 NP_948515.1 CDS RPA3176 NC_005296.1 3583525 3585375 D hypothetical protein 3583525..3585375 Rhodopseudomonas palustris CGA009 2689702 NP_948516.1 CDS RPA3177 NC_005296.1 3585412 3586218 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3585412..3586218) Rhodopseudomonas palustris CGA009 2689446 NP_948517.1 CDS RPA3178 NC_005296.1 3586281 3586679 R hypothetical protein complement(3586281..3586679) Rhodopseudomonas palustris CGA009 2689351 NP_948518.1 CDS RPA3179 NC_005296.1 3586798 3588249 D deoxyribodipyrimidine photolyase 3586798..3588249 Rhodopseudomonas palustris CGA009 2689532 NP_948519.1 CDS RPA3180 NC_005296.1 3588328 3588645 D hypothetical protein 3588328..3588645 Rhodopseudomonas palustris CGA009 2689687 NP_948520.1 CDS RPA3181 NC_005296.1 3588752 3589627 R DMT family permease complement(3588752..3589627) Rhodopseudomonas palustris CGA009 2691642 NP_948521.1 CDS phzF NC_005296.1 3589781 3590689 D phenazine biosynthesis PhzC/PhzF protein 3589781..3590689 Rhodopseudomonas palustris CGA009 2689284 NP_948522.1 CDS RPA3183 NC_005296.1 3590744 3591190 R hypothetical protein complement(3590744..3591190) Rhodopseudomonas palustris CGA009 2689279 NP_948523.1 CDS RPA3184 NC_005296.1 3591608 3592957 R cylclic diguanylate phosphodiesterase complement(3591608..3592957) Rhodopseudomonas palustris CGA009 2689268 NP_948524.1 CDS RPA3185 NC_005296.1 3593862 3595880 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methyl-accepting chemotaxis receptor/sensory transducer 3593862..3595880 Rhodopseudomonas palustris CGA009 2689614 NP_948525.1 CDS RPA3186 NC_005296.1 3596045 3596395 D hypothetical protein 3596045..3596395 Rhodopseudomonas palustris CGA009 2689226 NP_948526.1 CDS RPA3187 NC_005296.1 3596427 3599180 R sensor histidine kinase complement(3596427..3599180) Rhodopseudomonas palustris CGA009 2689876 NP_948527.1 CDS RPA3188 NC_005296.1 3599316 3601490 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; alcohol dehydrogenase complement(3599316..3601490) Rhodopseudomonas palustris CGA009 2689853 NP_948528.1 CDS RPA3189 NC_005296.1 3601644 3602435 R NUDIX hydrolase complement(3601644..3602435) Rhodopseudomonas palustris CGA009 2692487 NP_948529.1 CDS RPA3190 NC_005296.1 3602440 3603393 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; dihydrodipicolinate synthetase complement(3602440..3603393) Rhodopseudomonas palustris CGA009 2689989 NP_948530.1 CDS RPA3191 NC_005296.1 3603496 3604374 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; short-chain dehydrogenase complement(3603496..3604374) Rhodopseudomonas palustris CGA009 2692480 NP_948531.1 CDS RPA3192 NC_005296.1 3604521 3605381 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl dehydratase complement(3604521..3605381) Rhodopseudomonas palustris CGA009 2690424 NP_948532.1 CDS RPA3193 NC_005296.1 3605568 3605960 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3605568..3605960) Rhodopseudomonas palustris CGA009 2689769 NP_948533.1 CDS RPA3194 NC_005296.1 3605960 3607108 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(3605960..3607108) Rhodopseudomonas palustris CGA009 2689761 NP_948534.1 CDS RPA3195 NC_005296.1 3607397 3610882 R Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase complement(3607397..3610882) Rhodopseudomonas palustris CGA009 2689752 NP_948535.1 CDS RPA3196 NC_005296.1 3611163 3611609 D hypothetical protein 3611163..3611609 Rhodopseudomonas palustris CGA009 2692476 NP_948536.1 CDS RPA3197 NC_005296.1 3611854 3612141 D hypothetical protein 3611854..3612141 Rhodopseudomonas palustris CGA009 2689845 NP_948537.1 CDS RPA3198 NC_005296.1 3612206 3613015 R hypothetical protein complement(3612206..3613015) Rhodopseudomonas palustris CGA009 2692427 NP_948538.1 CDS RPA3199 NC_005296.1 3613121 3613669 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3613121..3613669) Rhodopseudomonas palustris CGA009 2692393 NP_948539.1 CDS RPA3200 NC_005296.1 3613758 3615554 R dual serine/threonine-protein kinase/phosphatase complement(3613758..3615554) Rhodopseudomonas palustris CGA009 2690876 NP_948540.1 CDS RPA3201 NC_005296.1 3615559 3616398 R formate/nitrate transporter complement(3615559..3616398) Rhodopseudomonas palustris CGA009 2690860 NP_948541.1 CDS RPA3202 NC_005296.1 3617129 3617986 R hypothetical protein complement(3617129..3617986) Rhodopseudomonas palustris CGA009 2690400 NP_948542.1 CDS pccB NC_005296.1 3618197 3619729 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; carboxyl transferase complement(3618197..3619729) Rhodopseudomonas palustris CGA009 2690817 NP_948543.1 CDS RPA3204 NC_005296.1 3620009 3620425 D hypothetical protein 3620009..3620425 Rhodopseudomonas palustris CGA009 2692353 NP_948544.1 CDS RPA3205 NC_005296.1 3620427 3620702 R Type III secretion proteins related to flagellar biosynthesis protein FlhB complement(3620427..3620702) Rhodopseudomonas palustris CGA009 2692332 NP_948545.1 CDS RPA3206 NC_005296.1 3620699 3622498 R hypothetical protein complement(3620699..3622498) Rhodopseudomonas palustris CGA009 2690803 NP_948546.1 CDS RPA3207 NC_005296.1 3622568 3623353 R ATP12 ATPase complement(3622568..3623353) Rhodopseudomonas palustris CGA009 2690785 NP_948547.1 CDS rluC NC_005296.1 3623771 3625138 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; pseudouridine synthase complement(3623771..3625138) Rhodopseudomonas palustris CGA009 2689736 NP_948548.1 CDS RPA3209 NC_005296.1 3625343 3625648 R hypothetical protein complement(3625343..3625648) Rhodopseudomonas palustris CGA009 2692319 NP_948549.1 CDS RPA3210 NC_005296.1 3625694 3626662 R prolyl oligopeptidase complement(3625694..3626662) Rhodopseudomonas palustris CGA009 2690770 NP_948550.1 CDS RPA3211 NC_005296.1 3626787 3630191 D TPR repeat-containing protein 3626787..3630191 Rhodopseudomonas palustris CGA009 2689025 NP_948551.1 CDS RPA3212 NC_005296.1 3630220 3630666 D hypothetical protein 3630220..3630666 Rhodopseudomonas palustris CGA009 2692280 NP_948552.1 CDS RPA3213 NC_005296.1 3630667 3630882 D hypothetical protein 3630667..3630882 Rhodopseudomonas palustris CGA009 2692234 NP_948553.1 CDS RPA3214 NC_005296.1 3630882 3631649 D hypothetical protein 3630882..3631649 Rhodopseudomonas palustris CGA009 2692230 NP_948554.1 CDS RPA3215 NC_005296.1 3631787 3632464 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; nitroreductase 3631787..3632464 Rhodopseudomonas palustris CGA009 2690393 NP_948555.1 CDS RPA3216 NC_005296.1 3632669 3634729 D sensor histidine kinase 3632669..3634729 Rhodopseudomonas palustris CGA009 2692203 NP_948556.1 CDS RPA3217 NC_005296.1 3634858 3636066 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched chain amino-acid ABC transporter substrate-binding protein complement(3634858..3636066) Rhodopseudomonas palustris CGA009 2692187 NP_948557.1 CDS RPA3218 NC_005296.1 3636172 3636591 R hypothetical protein complement(3636172..3636591) Rhodopseudomonas palustris CGA009 2691636 NP_948558.1 CDS RPA3219 NC_005296.1 3636661 3638631 R diguanylate cyclase/phosphodiesterase complement(3636661..3638631) Rhodopseudomonas palustris CGA009 2692173 NP_948559.1 CDS RPA3220 NC_005296.1 3638930 3640261 R recombination factor protein RarA complement(3638930..3640261) Rhodopseudomonas palustris CGA009 2689985 NP_948560.1 CDS RPA3221 NC_005296.1 3640484 3641875 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; peptidase S1C Do complement(3640484..3641875) Rhodopseudomonas palustris CGA009 2692123 NP_948561.1 CDS RPA3222 NC_005296.1 3641958 3642434 R MarR family transcriptional regulator complement(3641958..3642434) Rhodopseudomonas palustris CGA009 2690756 NP_948562.1 CDS RPA3223 NC_005296.1 3642465 3643481 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; alginate lyase 3642465..3643481 Rhodopseudomonas palustris CGA009 2690746 NP_948563.1 CDS RPA3224 NC_005296.1 3643705 3644499 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; short-chain dehydrogenase complement(3643705..3644499) Rhodopseudomonas palustris CGA009 2690701 NP_948564.1 CDS rplQ NC_005296.1 3644784 3645203 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(3644784..3645203) Rhodopseudomonas palustris CGA009 2690704 NP_948565.1 CDS rpoA NC_005296.1 3645359 3646378 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(3645359..3646378) Rhodopseudomonas palustris CGA009 2689927 NP_948566.1 CDS rpsK NC_005296.1 3646512 3646901 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(3646512..3646901) Rhodopseudomonas palustris CGA009 2689827 NP_948567.2 CDS rpsM NC_005296.1 3647032 3647400 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(3647032..3647400) Rhodopseudomonas palustris CGA009 2689714 NP_948568.1 CDS adk NC_005296.1 3647585 3648700 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(3647585..3648700) Rhodopseudomonas palustris CGA009 2689377 NP_948569.1 CDS secY NC_005296.1 3648697 3650028 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(3648697..3650028) Rhodopseudomonas palustris CGA009 2689570 NP_948570.1 CDS rplO NC_005296.1 3650181 3650666 R late assembly protein; 50S ribosomal protein L15 complement(3650181..3650666) Rhodopseudomonas palustris CGA009 2692072 NP_948571.1 CDS rpmD NC_005296.1 3650679 3650873 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(3650679..3650873) Rhodopseudomonas palustris CGA009 2692067 NP_948572.1 CDS rpsE NC_005296.1 3650932 3651507 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(3650932..3651507) Rhodopseudomonas palustris CGA009 2692063 NP_948573.1 CDS rplR NC_005296.1 3651568 3651930 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(3651568..3651930) Rhodopseudomonas palustris CGA009 2692042 NP_948574.1 CDS rplF NC_005296.1 3651942 3652475 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(3651942..3652475) Rhodopseudomonas palustris CGA009 2691267 NP_948575.1 CDS rpsH NC_005296.1 3652588 3652986 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(3652588..3652986) Rhodopseudomonas palustris CGA009 2689778 NP_948576.1 CDS rpsN NC_005296.1 3653002 3653307 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(3653002..3653307) Rhodopseudomonas palustris CGA009 2688933 NP_948577.1 CDS rplE NC_005296.1 3653351 3653908 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(3653351..3653908) Rhodopseudomonas palustris CGA009 2691355 NP_948578.1 CDS rplX NC_005296.1 3653901 3654215 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(3653901..3654215) Rhodopseudomonas palustris CGA009 2689021 NP_948579.1 CDS rplN NC_005296.1 3654215 3654583 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(3654215..3654583) Rhodopseudomonas palustris CGA009 2689022 NP_948580.1 CDS rpsQ NC_005296.1 3654647 3654895 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(3654647..3654895) Rhodopseudomonas palustris CGA009 2689059 NP_948581.1 CDS rpmC NC_005296.1 3654908 3655117 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(3654908..3655117) Rhodopseudomonas palustris CGA009 2690667 NP_948582.1 CDS rplP NC_005296.1 3655123 3655536 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(3655123..3655536) Rhodopseudomonas palustris CGA009 2690647 NP_948583.1 CDS rpsC NC_005296.1 3655572 3656279 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(3655572..3656279) Rhodopseudomonas palustris CGA009 2690666 NP_948584.1 CDS rplV NC_005296.1 3656302 3656685 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(3656302..3656685) Rhodopseudomonas palustris CGA009 2690360 NP_948585.1 CDS rpsS NC_005296.1 3656696 3656974 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(3656696..3656974) Rhodopseudomonas palustris CGA009 2692035 NP_948586.1 CDS rplB NC_005296.1 3656986 3657822 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(3656986..3657822) Rhodopseudomonas palustris CGA009 2692032 NP_948587.1 CDS rplW NC_005296.1 3657836 3658135 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(3657836..3658135) Rhodopseudomonas palustris CGA009 2690605 NP_948588.1 CDS rplD NC_005296.1 3658132 3658752 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(3658132..3658752) Rhodopseudomonas palustris CGA009 2692513 NP_948589.1 CDS rplC NC_005296.1 3658754 3659479 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(3658754..3659479) Rhodopseudomonas palustris CGA009 2692016 NP_948590.1 CDS rpsJ NC_005296.1 3659530 3659838 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(3659530..3659838) Rhodopseudomonas palustris CGA009 2691982 NP_948591.1 CDS tufA NC_005296.1 3659926 3661116 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(3659926..3661116) Rhodopseudomonas palustris CGA009 2691965 NP_948592.1 CDS fusA NC_005296.1 3661155 3663227 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(3661155..3663227) Rhodopseudomonas palustris CGA009 2691963 NP_948593.1 CDS rpsG NC_005296.1 3663258 3663728 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(3663258..3663728) Rhodopseudomonas palustris CGA009 2690599 NP_948594.1 CDS rpsL NC_005296.1 3663744 3664115 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(3663744..3664115) Rhodopseudomonas palustris CGA009 2691958 NP_948595.1 CDS RPA3256 NC_005296.1 3664980 3665966 D hypothetical protein 3664980..3665966 Rhodopseudomonas palustris CGA009 2691949 NP_948596.1 CDS RPA3257 NC_005296.1 3666065 3666901 R AraC family transcriptional regulator complement(3666065..3666901) Rhodopseudomonas palustris CGA009 2690572 NP_948597.1 CDS RPA3258 NC_005296.1 3667022 3667717 D hypothetical protein 3667022..3667717 Rhodopseudomonas palustris CGA009 2689797 NP_948598.1 CDS RPA3259 NC_005296.1 3667935 3668468 R hypothetical protein complement(3667935..3668468) Rhodopseudomonas palustris CGA009 2690319 NP_948599.1 CDS RPA3260 NC_005296.1 3668874 3671003 R cation-transporting P-type ATPase complement(3668874..3671003) Rhodopseudomonas palustris CGA009 2690321 NP_948600.1 CDS hmrR NC_005296.1 3671069 3671470 D heavy metal resistance transcriptional regulator HmrR 3671069..3671470 Rhodopseudomonas palustris CGA009 2690306 NP_948601.1 CDS RPA3262 NC_005296.1 3671513 3672721 R transporter complement(3671513..3672721) Rhodopseudomonas palustris CGA009 2690534 NP_948602.1 CDS phnB NC_005296.1 3672938 3673366 R hypothetical protein complement(3672938..3673366) Rhodopseudomonas palustris CGA009 2691945 NP_948603.1 CDS RPA3264 NC_005296.1 3673511 3673972 D MarR family transcriptional regulator 3673511..3673972 Rhodopseudomonas palustris CGA009 2691921 NP_948604.1 CDS RPA3265 NC_005296.1 3674048 3676186 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter complement(3674048..3676186) Rhodopseudomonas palustris CGA009 2691903 NP_948605.1 CDS RPA3266 NC_005296.1 3676306 3678369 R type 11 methyltransferase complement(3676306..3678369) Rhodopseudomonas palustris CGA009 2689535 NP_948606.1 CDS rpoC NC_005296.1 3678672 3682880 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(3678672..3682880) Rhodopseudomonas palustris CGA009 2691898 NP_948607.1 CDS rpoB NC_005296.1 3683017 3687141 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(3683017..3687141) Rhodopseudomonas palustris CGA009 2691883 NP_948608.1 CDS rplL NC_005296.1 3687607 3687984 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(3687607..3687984) Rhodopseudomonas palustris CGA009 2691855 NP_948609.2 CDS rplJ NC_005296.1 3688040 3688558 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(3688040..3688558) Rhodopseudomonas palustris CGA009 2691846 NP_948610.1 CDS RPA3271 NC_005296.1 3689460 3690422 R NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(3689460..3690422) Rhodopseudomonas palustris CGA009 2690508 NP_948611.1 CDS rplA NC_005296.1 3690510 3691199 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(3690510..3691199) Rhodopseudomonas palustris CGA009 2691812 NP_948612.1 CDS rplK NC_005296.1 3691207 3691635 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(3691207..3691635) Rhodopseudomonas palustris CGA009 2689145 NP_948613.1 CDS nusG NC_005296.1 3691858 3692388 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(3691858..3692388) Rhodopseudomonas palustris CGA009 2691622 NP_948614.1 CDS secE NC_005296.1 3692405 3692656 R forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(3692405..3692656) Rhodopseudomonas palustris CGA009 2690276 NP_948615.1 CDS RPA3276 NC_005296.1 3692921 3693769 R tonB protein complement(3692921..3693769) Rhodopseudomonas palustris CGA009 2691770 NP_948616.1 CDS exbD NC_005296.1 3693766 3694215 R enterochelin uptake protein ExbD complement(3693766..3694215) Rhodopseudomonas palustris CGA009 2689127 NP_948617.1 CDS exbB NC_005296.1 3694230 3695165 R enterochelin uptake protein ExbB complement(3694230..3695165) Rhodopseudomonas palustris CGA009 2691722 NP_948618.1 CDS pigA NC_005296.1 3695162 3695845 R iron-starvation protein complement(3695162..3695845) Rhodopseudomonas palustris CGA009 2691701 NP_948619.1 CDS hasR NC_005296.1 3695950 3699525 R heme receptor complement(3695950..3699525) Rhodopseudomonas palustris CGA009 2690253 NP_948620.1 CDS RPA3281 NC_005296.1 3699586 3700551 R iron siderophore sensor protein FecR complement(3699586..3700551) Rhodopseudomonas palustris CGA009 2689973 NP_948621.1 CDS RPA3282 NC_005296.1 3700694 3701215 R RNA polymerase ECF-type sigma factor FecI complement(3700694..3701215) Rhodopseudomonas palustris CGA009 2690240 NP_948622.1 CDS tuf NC_005296.1 3702061 3703251 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(3702061..3703251) Rhodopseudomonas palustris CGA009 2690208 NP_948623.1 CDS RPA3284 NC_005296.1 3703437 3704660 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; beta-lactamase 3703437..3704660 Rhodopseudomonas palustris CGA009 2690180 NP_948624.1 CDS RPA3285 NC_005296.1 3704783 3705550 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; dehydrogenase complement(3704783..3705550) Rhodopseudomonas palustris CGA009 2690161 NP_948625.1 CDS RPA3286 NC_005296.1 3705733 3706488 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; phosphoglycerate mutase complement(3705733..3706488) Rhodopseudomonas palustris CGA009 2690144 NP_948626.1 CDS RPA3287 NC_005296.1 3706645 3707430 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; short-chain dehydrogenase/reductase SDR 3706645..3707430 Rhodopseudomonas palustris CGA009 2690136 NP_948627.1 CDS RPA3288 NC_005296.1 3707777 3708835 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; aminoglycoside phosphotransferase complement(3707777..3708835) Rhodopseudomonas palustris CGA009 2690115 NP_948628.1 CDS RPA3289 NC_005296.1 3708987 3710219 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl-CoA dehydrogenase complement(3708987..3710219) Rhodopseudomonas palustris CGA009 2690108 NP_948629.1 CDS RPA3290 NC_005296.1 3710464 3711126 D TetR family transcriptional regulator 3710464..3711126 Rhodopseudomonas palustris CGA009 2690084 NP_948630.1 CDS RPA3291 NC_005296.1 3711156 3712817 R membrane transporter complement(3711156..3712817) Rhodopseudomonas palustris CGA009 2690063 NP_948631.1 CDS RPA3292 NC_005296.1 3713027 3713293 R hypothetical protein complement(3713027..3713293) Rhodopseudomonas palustris CGA009 2691240 NP_948632.1 CDS RPA3293 NC_005296.1 3713619 3714371 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched chain amino acid ABC transporter ATP-binding protein complement(3713619..3714371) Rhodopseudomonas palustris CGA009 2691230 NP_948633.1 CDS RPA3294 NC_005296.1 3714368 3715138 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched chain amino acid ABC transporter ATP-binding protein complement(3714368..3715138) Rhodopseudomonas palustris CGA009 2691209 NP_948634.1 CDS RPA3295 NC_005296.1 3715135 3716358 R inner-membrane translocator complement(3715135..3716358) Rhodopseudomonas palustris CGA009 2690497 NP_948635.1 CDS RPA3296 NC_005296.1 3716363 3717370 R inner-membrane translocator complement(3716363..3717370) Rhodopseudomonas palustris CGA009 2691196 NP_948636.1 CDS RPA3297 NC_005296.1 3717617 3718969 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched chain amino-acid ABC transporter substrate-binding protein complement(3717617..3718969) Rhodopseudomonas palustris CGA009 2691395 NP_948637.1 CDS RPA3298 NC_005296.1 3719415 3720800 R hypothetical protein complement(3719415..3720800) Rhodopseudomonas palustris CGA009 2691137 NP_948638.1 CDS RPA3299 NC_005296.1 3720964 3722520 R long-chain-fatty-acid CoA ligase complement(3720964..3722520) Rhodopseudomonas palustris CGA009 2691125 NP_948639.1 CDS RPA3300 NC_005296.1 3722438 3723184 R TetR family transcriptional regulator complement(3722438..3723184) Rhodopseudomonas palustris CGA009 2690484 NP_948640.1 CDS RPA3301 NC_005296.1 3723347 3724531 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; lipid-transfer protein 3723347..3724531 Rhodopseudomonas palustris CGA009 2690477 NP_948641.1 CDS RPA3302 NC_005296.1 3724542 3724988 D hypothetical protein 3724542..3724988 Rhodopseudomonas palustris CGA009 2690467 NP_948642.1 CDS RPA3303 NC_005296.1 3724985 3725410 D acyl dehydratase 3724985..3725410 Rhodopseudomonas palustris CGA009 2691095 NP_948643.1 CDS fabG3 NC_005296.1 3725434 3726261 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 3-oxoacyl-ACP reductase 3725434..3726261 Rhodopseudomonas palustris CGA009 2691087 NP_948644.1 CDS paaG2 NC_005296.1 3726282 3727052 D CTG start codon; enoyl-CoA hydratase 3726282..3727052 Rhodopseudomonas palustris CGA009 2691080 NP_948645.1 CDS nirK1 NC_005296.1 3727317 3728423 D nitrite reductase major outer membrane copper-containing protein 3727317..3728423 Rhodopseudomonas palustris CGA009 2693085 NP_948646.1 CDS xthA3 NC_005296.1 3728453 3729235 R exonuclease III complement(3728453..3729235) Rhodopseudomonas palustris CGA009 2691076 NP_948647.1 CDS RPA3308 NC_005296.1 3729714 3730223 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 3729714..3730223 Rhodopseudomonas palustris CGA009 2690049 NP_948648.1 CDS RPA3309 NC_005296.1 3730238 3730804 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 3730238..3730804 Rhodopseudomonas palustris CGA009 2691038 NP_948649.1 CDS katE NC_005296.1 3730948 3733065 D catalase 3730948..3733065 Rhodopseudomonas palustris CGA009 2691035 NP_948650.1 CDS RPA3311 NC_005296.1 3733281 3735482 D glycosyl hydrolase 3733281..3735482 Rhodopseudomonas palustris CGA009 2691039 NP_948651.1 CDS RPA3312 NC_005296.1 3735641 3736489 D transglutaminase 3735641..3736489 Rhodopseudomonas palustris CGA009 2691009 NP_948652.1 CDS RPA3313 NC_005296.1 3736702 3736914 R hypothetical protein complement(3736702..3736914) Rhodopseudomonas palustris CGA009 2692549 NP_948653.1 CDS degP NC_005296.1 3736985 3738184 R DegP protease complement(3736985..3738184) Rhodopseudomonas palustris CGA009 2690462 NP_948654.1 CDS RPA3315 NC_005296.1 3738485 3739159 D protease 3738485..3739159 Rhodopseudomonas palustris CGA009 2690981 NP_948655.1 CDS RPA3316 NC_005296.1 3740366 3743506 D chemotaxis cheB/cheR fusion protein 3740366..3743506 Rhodopseudomonas palustris CGA009 2693003 NP_948656.1 CDS RPA3317 NC_005296.1 3743574 3743972 R hypothetical protein complement(3743574..3743972) Rhodopseudomonas palustris CGA009 2692998 NP_948657.1 CDS RPA3318 NC_005296.1 3743984 3744712 R Crp/Fnr family transcriptional regulator complement(3743984..3744712) Rhodopseudomonas palustris CGA009 2692987 NP_948658.1 CDS RPA3319 NC_005296.1 3744910 3745329 D hypothetical protein 3744910..3745329 Rhodopseudomonas palustris CGA009 2692969 NP_948659.1 CDS RPA3320 NC_005296.1 3745839 3746519 D hypothetical protein 3745839..3746519 Rhodopseudomonas palustris CGA009 2692955 NP_948660.1 CDS algC NC_005296.1 3746647 3748143 R phosphomannomutase complement(3746647..3748143) Rhodopseudomonas palustris CGA009 2692926 NP_948661.1 CDS manC NC_005296.1 3748190 3749626 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; mannose-1-phosphate guanylyltransferase complement(3748190..3749626) Rhodopseudomonas palustris CGA009 2692907 NP_948662.1 CDS RPA3323 NC_005296.1 3749863 3751635 R hypothetical protein complement(3749863..3751635) Rhodopseudomonas palustris CGA009 2692889 NP_948663.1 CDS RPA3324 NC_005296.1 3751977 3752846 R hypothetical protein complement(3751977..3752846) Rhodopseudomonas palustris CGA009 2692862 NP_948664.1 CDS RPA3325 NC_005296.1 3753666 3754148 D hypothetical protein 3753666..3754148 Rhodopseudomonas palustris CGA009 2692816 NP_948665.1 CDS RPA3326 NC_005296.1 3754537 3755022 D hypothetical protein 3754537..3755022 Rhodopseudomonas palustris CGA009 2692852 NP_948666.1 CDS RPA3327 NC_005296.1 3755308 3755592 D hypothetical protein 3755308..3755592 Rhodopseudomonas palustris CGA009 2692827 NP_948667.1 CDS RPA3328 NC_005296.1 3755628 3756044 R XRE family transcriptional regulator complement(3755628..3756044) Rhodopseudomonas palustris CGA009 2692782 NP_948668.1 CDS RPA3329 NC_005296.1 3756423 3758174 R hypothetical protein complement(3756423..3758174) Rhodopseudomonas palustris CGA009 2692746 NP_948669.1 CDS RPA3330 NC_005296.1 3758733 3759116 D hypothetical protein 3758733..3759116 Rhodopseudomonas palustris CGA009 2692743 NP_948670.1 CDS RPA3331 NC_005296.1 3759101 3759631 D hypothetical protein 3759101..3759631 Rhodopseudomonas palustris CGA009 2692714 NP_948671.1 CDS RPA3332 NC_005296.1 3759664 3759948 D hypothetical protein 3759664..3759948 Rhodopseudomonas palustris CGA009 2692708 NP_948672.1 CDS csgG NC_005296.1 3760005 3760880 D curli production assembly/transport component csgg 3760005..3760880 Rhodopseudomonas palustris CGA009 2692674 NP_948673.1 CDS RPA3334 NC_005296.1 3761133 3761522 R hypothetical protein complement(3761133..3761522) Rhodopseudomonas palustris CGA009 2692668 NP_948674.1 CDS RPA3335 NC_005296.1 3761657 3761998 R hypothetical protein complement(3761657..3761998) Rhodopseudomonas palustris CGA009 2692646 NP_948675.1 CDS RPA3336 NC_005296.1 3762564 3763271 R lipopeptide antibiotics iturin a biosynthesis protein complement(3762564..3763271) Rhodopseudomonas palustris CGA009 2692640 NP_948676.1 CDS RPA3337 NC_005296.1 3763287 3764387 R hypothetical protein complement(3763287..3764387) Rhodopseudomonas palustris CGA009 2692613 NP_948677.1 CDS RPA3338 NC_005296.1 3764459 3766768 R condensation domain-containing protein complement(3764459..3766768) Rhodopseudomonas palustris CGA009 2692588 NP_948678.1 CDS mcyE NC_005296.1 3766765 3774813 R polyketide synthase complement(3766765..3774813) Rhodopseudomonas palustris CGA009 2691318 NP_948679.1 CDS RPA3340 NC_005296.1 3774836 3776749 R peptide synthetase (fragment) complement(3774836..3776749) Rhodopseudomonas palustris CGA009 2691475 NP_948680.1 CDS RPA3341 NC_005296.1 3777237 3778376 D acetyltransferase 3777237..3778376 Rhodopseudomonas palustris CGA009 2691566 NP_948681.1 CDS RPA3342 NC_005296.1 3778452 3780284 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glycosyl hydrolase 3778452..3780284 Rhodopseudomonas palustris CGA009 2690038 NP_948682.1 CDS mtfB NC_005296.1 3780347 3781483 D mannosyltransferase 3780347..3781483 Rhodopseudomonas palustris CGA009 2689997 NP_948683.1 CDS RPA3344 NC_005296.1 3781605 3783353 D oxidoreductase 3781605..3783353 Rhodopseudomonas palustris CGA009 2689988 NP_948684.1 CDS RPA3345 NC_005296.1 3783348 3784790 R hypothetical protein complement(3783348..3784790) Rhodopseudomonas palustris CGA009 2689986 NP_948685.1 CDS RPA3346 NC_005296.1 3785284 3786384 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; mannosyltransferase 3785284..3786384 Rhodopseudomonas palustris CGA009 2690947 NP_948686.1 CDS RPA3347 NC_005296.1 3786407 3787297 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glycosyltransferase 3786407..3787297 Rhodopseudomonas palustris CGA009 2690933 NP_948687.1 CDS RPA3348 NC_005296.1 3787401 3788894 R polysaccharide export protein complement(3787401..3788894) Rhodopseudomonas palustris CGA009 2690926 NP_948688.1 CDS RPA3349 NC_005296.1 3789036 3790172 R exopolysaccharide biosynthesis protein complement(3789036..3790172) Rhodopseudomonas palustris CGA009 2691412 NP_948689.1 CDS RPA3350 NC_005296.1 3790782 3791927 D aminotransferase 3790782..3791927 Rhodopseudomonas palustris CGA009 2690944 NP_948690.1 CDS RPA3351 NC_005296.1 3792003 3792809 D glycosyl transferase family protein 3792003..3792809 Rhodopseudomonas palustris CGA009 2690958 NP_948691.1 CDS RPA3352 NC_005296.1 3792840 3793958 D glycosyltransferase 3792840..3793958 Rhodopseudomonas palustris CGA009 2689991 NP_948692.1 CDS RPA3353 NC_005296.1 3793955 3794671 R serine/threonine protein phosphatase complement(3793955..3794671) Rhodopseudomonas palustris CGA009 2689957 NP_948693.1 CDS RPA3354 NC_005296.1 3794981 3795619 D hypothetical protein 3794981..3795619 Rhodopseudomonas palustris CGA009 2689830 NP_948694.1 CDS RPA3355 NC_005296.1 3795678 3798026 D exopolysaccharide polymerization protein 3795678..3798026 Rhodopseudomonas palustris CGA009 2690003 NP_948695.1 CDS RPA3356 NC_005296.1 3798083 3798739 D hypothetical protein 3798083..3798739 Rhodopseudomonas palustris CGA009 2691441 NP_948696.1 CDS RPA3357 NC_005296.1 3799641 3800315 D glycosyltransferase 3799641..3800315 Rhodopseudomonas palustris CGA009 2691557 NP_948697.1 CDS RPA3358 NC_005296.1 3801039 3801755 D hypothetical protein 3801039..3801755 Rhodopseudomonas palustris CGA009 2692543 NP_948698.1 CDS RPA3359 NC_005296.1 3801814 3803247 R O-antigen polymerase complement(3801814..3803247) Rhodopseudomonas palustris CGA009 2692605 NP_948699.1 CDS pssN NC_005296.1 3803244 3804464 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; capsule polysaccharide export outer membrane protein complement(3803244..3804464) Rhodopseudomonas palustris CGA009 2692628 NP_948700.1 CDS RPA3361 NC_005296.1 3805215 3805466 D hypothetical protein 3805215..3805466 Rhodopseudomonas palustris CGA009 2692655 NP_948701.1 CDS RPA3362 NC_005296.1 3805695 3805976 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 3805695..3805976 Rhodopseudomonas palustris CGA009 2692661 NP_948702.1 CDS RPA3363 NC_005296.1 3806489 3806956 R hypothetical protein complement(3806489..3806956) Rhodopseudomonas palustris CGA009 2692701 NP_948703.1 CDS rrm1 NC_005296.1 3807406 3808233 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; RNA methyltransferase TrmH group 3 3807406..3808233 Rhodopseudomonas palustris CGA009 2692744 NP_948704.1 CDS RPA3365 NC_005296.1 3808306 3808806 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3808306..3808806) Rhodopseudomonas palustris CGA009 2692761 NP_948705.1 CDS RPA3366 NC_005296.1 3808864 3809337 R hypothetical protein complement(3808864..3809337) Rhodopseudomonas palustris CGA009 2692815 NP_948706.1 CDS RPA3367 NC_005296.1 3809655 3810125 R photopigment and puc activator complement(3809655..3810125) Rhodopseudomonas palustris CGA009 2692863 NP_948707.1 CDS RPA3368 NC_005296.1 3810250 3810849 R hypothetical protein complement(3810250..3810849) Rhodopseudomonas palustris CGA009 2692884 NP_948708.1 CDS RPA3369 NC_005296.1 3811211 3811423 D hypothetical protein 3811211..3811423 Rhodopseudomonas palustris CGA009 2692899 NP_948709.1 CDS RPA3370 NC_005296.1 3811538 3812215 D hypothetical protein 3811538..3812215 Rhodopseudomonas palustris CGA009 2692914 NP_948710.1 CDS RPA3371 NC_005296.1 3812381 3813103 R outer membrane protein complement(3812381..3813103) Rhodopseudomonas palustris CGA009 2692932 NP_948711.1 CDS RPA3372 NC_005296.1 3813283 3813702 R hypothetical protein complement(3813283..3813702) Rhodopseudomonas palustris CGA009 2692963 NP_948712.1 CDS RPA3373 NC_005296.1 3813795 3814091 R hypothetical protein complement(3813795..3814091) Rhodopseudomonas palustris CGA009 2692988 NP_948713.1 CDS ppnK NC_005296.1 3814236 3815222 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 3814236..3815222 Rhodopseudomonas palustris CGA009 2693001 NP_948714.1 CDS RPA3375 NC_005296.1 3815306 3815749 R hypothetical protein complement(3815306..3815749) Rhodopseudomonas palustris CGA009 2693015 NP_948715.1 CDS RPA3376 NC_005296.1 3815742 3819017 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; DNA methyltransferase complement(3815742..3819017) Rhodopseudomonas palustris CGA009 2690984 NP_948716.1 CDS RPA3377 NC_005296.1 3819486 3820190 R 3-oxoacyl-acyl carrier protein reductase complement(3819486..3820190) Rhodopseudomonas palustris CGA009 2691001 NP_948717.1 CDS RPA3378 NC_005296.1 3820668 3820844 R hypothetical protein complement(3820668..3820844) Rhodopseudomonas palustris CGA009 2691003 NP_948718.1 CDS RPA3379 NC_005296.1 3821212 3821406 R hypothetical protein complement(3821212..3821406) Rhodopseudomonas palustris CGA009 2691016 NP_948719.1 CDS RPA3380 NC_005296.1 3821616 3822161 D chemotaxis protein CheY 3821616..3822161 Rhodopseudomonas palustris CGA009 2691020 NP_948720.1 CDS RPA3381 NC_005296.1 3822179 3822769 D Hpt domain-containing protein 3822179..3822769 Rhodopseudomonas palustris CGA009 2693056 NP_948721.1 CDS RPA3382 NC_005296.1 3823066 3824235 R hypothetical protein complement(3823066..3824235) Rhodopseudomonas palustris CGA009 2691026 NP_948722.1 CDS RPA3383 NC_005296.1 3824681 3825466 D taurine transport system permease 3824681..3825466 Rhodopseudomonas palustris CGA009 2691037 NP_948723.1 CDS RPA3384 NC_005296.1 3825463 3826494 D nitrate/sulfonate/bicarbonate ABC transporter periplasmic-binding protein 3825463..3826494 Rhodopseudomonas palustris CGA009 2691052 NP_948724.1 CDS nrtC2 NC_005296.1 3826491 3827327 D nitrate transport system ATP-binding protein 3826491..3827327 Rhodopseudomonas palustris CGA009 2691057 NP_948725.1 CDS RPA3386 NC_005296.1 3827388 3829061 D amidohydrolase 3827388..3829061 Rhodopseudomonas palustris CGA009 2691388 NP_948726.1 CDS RPA3387 NC_005296.1 3829071 3830087 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; LysR family transcriptional regulator 3829071..3830087 Rhodopseudomonas palustris CGA009 2693092 NP_948727.1 CDS RPA3388 NC_005296.1 3830094 3831134 R hypothetical protein complement(3830094..3831134) Rhodopseudomonas palustris CGA009 2693087 NP_948728.1 CDS RPA3389 NC_005296.1 3831331 3832029 D hypothetical protein 3831331..3832029 Rhodopseudomonas palustris CGA009 2691093 NP_948729.1 CDS hisI NC_005296.1 3832039 3832494 R PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase complement(3832039..3832494) Rhodopseudomonas palustris CGA009 2691094 NP_948730.1 CDS folE NC_005296.1 3832523 3833212 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(3832523..3833212) Rhodopseudomonas palustris CGA009 2690476 NP_948731.1 CDS RPA3392 NC_005296.1 3833480 3833932 D nifU-like protein 3833480..3833932 Rhodopseudomonas palustris CGA009 2691122 NP_948732.1 CDS RPA3393 NC_005296.1 3834115 3835005 R hypothetical protein complement(3834115..3835005) Rhodopseudomonas palustris CGA009 2691133 NP_948733.1 CDS RPA3394 NC_005296.1 3835177 3835635 D hypothetical protein 3835177..3835635 Rhodopseudomonas palustris CGA009 2691141 NP_948734.1 CDS RPA3395 NC_005296.1 3835622 3836413 R hypothetical protein complement(3835622..3836413) Rhodopseudomonas palustris CGA009 2691151 NP_948735.1 CDS RPA3396 NC_005296.1 3836526 3837653 R hypothetical protein complement(3836526..3837653) Rhodopseudomonas palustris CGA009 2691185 NP_948736.1 CDS RPA3397 NC_005296.1 3837655 3838113 R hypothetical protein complement(3837655..3838113) Rhodopseudomonas palustris CGA009 2691390 NP_948737.1 CDS RPA3398 NC_005296.1 3838266 3839531 R arsenite permease complement(3838266..3839531) Rhodopseudomonas palustris CGA009 2691201 NP_948738.1 CDS cspA4 NC_005296.1 3839779 3840006 D cold shock DNA binding protein 3839779..3840006 Rhodopseudomonas palustris CGA009 2691247 NP_948739.1 CDS RPA3400 NC_005296.1 3840107 3840355 D hypothetical protein 3840107..3840355 Rhodopseudomonas palustris CGA009 2691251 NP_948740.1 CDS RPA3401 NC_005296.1 3840399 3840596 D hypothetical protein 3840399..3840596 Rhodopseudomonas palustris CGA009 2691245 NP_948741.1 CDS RPA3402 NC_005296.1 3840586 3841008 R hypothetical protein complement(3840586..3841008) Rhodopseudomonas palustris CGA009 2690068 NP_948742.1 CDS RPA3403 NC_005296.1 3841013 3841645 R TetR family transcriptional regulator complement(3841013..3841645) Rhodopseudomonas palustris CGA009 2690112 NP_948743.1 CDS RPA3404 NC_005296.1 3841743 3842393 D O-methyltransferase 3841743..3842393 Rhodopseudomonas palustris CGA009 2690121 NP_948744.1 CDS RPA3405 NC_005296.1 3842755 3843873 R transporter complement(3842755..3843873) Rhodopseudomonas palustris CGA009 2690123 NP_948745.1 CDS thrS NC_005296.1 3844183 3846159 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 3844183..3846159 Rhodopseudomonas palustris CGA009 2690143 NP_948746.1 CDS RPA3407 NC_005296.1 3846441 3847019 R hypothetical protein complement(3846441..3847019) Rhodopseudomonas palustris CGA009 2690178 NP_948747.1 CDS RPA3408 NC_005296.1 3847356 3847865 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; nitroreductase family protein 3847356..3847865 Rhodopseudomonas palustris CGA009 2690196 NP_948748.1 CDS RPA3409 NC_005296.1 3847917 3849791 R metal-dependent hydrolase complement(3847917..3849791) Rhodopseudomonas palustris CGA009 2690210 NP_948749.1 CDS RPA3410 NC_005296.1 3849886 3852360 R diguanylate cyclase/phosphodiesterase complement(3849886..3852360) Rhodopseudomonas palustris CGA009 2690221 NP_948750.1 CDS RPA3411 NC_005296.1 3852571 3853734 R hypothetical protein complement(3852571..3853734) Rhodopseudomonas palustris CGA009 2690224 NP_948751.1 CDS RPA3412 NC_005296.1 3853863 3854894 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; patatin-like phospholipase domain-containing protein 3853863..3854894 Rhodopseudomonas palustris CGA009 2689775 NP_948752.1 CDS RPA3413 NC_005296.1 3855126 3856241 R hypothetical protein complement(3855126..3856241) Rhodopseudomonas palustris CGA009 2689369 NP_948753.1 CDS RPA3414 NC_005296.1 3856270 3858531 R hydroxamate-type ferrisiderophore receptor complement(3856270..3858531) Rhodopseudomonas palustris CGA009 2690259 NP_948754.1 CDS RPA3415 NC_005296.1 3858681 3859316 D TetR family transcriptional regulator 3858681..3859316 Rhodopseudomonas palustris CGA009 2691702 NP_948755.1 CDS RPA3416 NC_005296.1 3859338 3859766 R hypothetical protein complement(3859338..3859766) Rhodopseudomonas palustris CGA009 2691723 NP_948756.1 CDS RPA3417 NC_005296.1 3860004 3860774 R rhomboid-like protein complement(3860004..3860774) Rhodopseudomonas palustris CGA009 2691740 NP_948757.1 CDS RPA3418 NC_005296.1 3861259 3861828 D hypothetical protein 3861259..3861828 Rhodopseudomonas palustris CGA009 2689169 NP_948758.1 CDS RPA3419 NC_005296.1 3861798 3862562 R Crp/Fnr family transcriptional regulator complement(3861798..3862562) Rhodopseudomonas palustris CGA009 2689168 NP_948759.1 CDS RPA3420 NC_005296.1 3863062 3863613 D type IV pilus assembly PilZ 3863062..3863613 Rhodopseudomonas palustris CGA009 2691785 NP_948760.1 CDS RPA3421 NC_005296.1 3863945 3864565 D transglutaminase-like cysteine peptidase BTLCP 3863945..3864565 Rhodopseudomonas palustris CGA009 2690274 NP_948761.1 CDS RPA3422 NC_005296.1 3864703 3865290 R MarR family transcriptional regulator complement(3864703..3865290) Rhodopseudomonas palustris CGA009 2689162 NP_948762.1 CDS RPA3423 NC_005296.1 3865814 3867313 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 3865814..3867313 Rhodopseudomonas palustris CGA009 2691513 NP_948763.1 CDS RPA3424 NC_005296.1 3867737 3867904 D hypothetical protein 3867737..3867904 Rhodopseudomonas palustris CGA009 2691821 NP_948764.1 CDS RPA3425 NC_005296.1 3867936 3868466 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hexapeptide repeat-containing transferase complement(3867936..3868466) Rhodopseudomonas palustris CGA009 2690509 NP_948765.1 CDS RPA3426 NC_005296.1 3868526 3868858 R hypothetical protein complement(3868526..3868858) Rhodopseudomonas palustris CGA009 2691833 NP_948766.1 CDS RPA3427 NC_005296.1 3869049 3869756 D hypothetical protein 3869049..3869756 Rhodopseudomonas palustris CGA009 2691864 NP_948767.1 CDS RPA3428 NC_005296.1 3869773 3870003 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3869773..3870003) Rhodopseudomonas palustris CGA009 2689385 NP_948768.1 CDS cysE2 NC_005296.1 3870160 3870987 R serine O-acetyltransferase complement(3870160..3870987) Rhodopseudomonas palustris CGA009 2692532 NP_948769.1 CDS RPA3430 NC_005296.1 3871208 3871963 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; alpha/beta hydrolase complement(3871208..3871963) Rhodopseudomonas palustris CGA009 2691916 NP_948770.1 CDS RPA3431 NC_005296.1 3872133 3873281 R hypothetical protein complement(3872133..3873281) Rhodopseudomonas palustris CGA009 2691936 NP_948771.1 CDS RPA3432 NC_005296.1 3873487 3873732 D hypothetical protein 3873487..3873732 Rhodopseudomonas palustris CGA009 2690515 NP_948772.1 CDS RPA3433 NC_005296.1 3873751 3874944 D salicylate 1-monooxygenase 3873751..3874944 Rhodopseudomonas palustris CGA009 2690313 NP_948773.1 CDS RPA3434 NC_005296.1 3875337 3875981 D universal stress protein 3875337..3875981 Rhodopseudomonas palustris CGA009 2690564 NP_948774.1 CDS RPA3435 NC_005296.1 3876078 3876938 D glycosyl transferase family protein 3876078..3876938 Rhodopseudomonas palustris CGA009 2690343 NP_948775.1 CDS RPA3436 NC_005296.1 3876964 3877473 D N-acetyltransferase GCN5 3876964..3877473 Rhodopseudomonas palustris CGA009 2690578 NP_948776.1 CDS RPA3437 NC_005296.1 3878064 3879167 D hypothetical protein 3878064..3879167 Rhodopseudomonas palustris CGA009 2689980 NP_948777.1 CDS RPA3438 NC_005296.1 3879239 3879502 R hypothetical protein complement(3879239..3879502) Rhodopseudomonas palustris CGA009 2691948 NP_948778.1 CDS RPA3439 NC_005296.1 3880205 3881392 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hydrolase 3880205..3881392 Rhodopseudomonas palustris CGA009 2691985 NP_948779.1 CDS RPA3440 NC_005296.1 3881385 3882800 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 3881385..3882800 Rhodopseudomonas palustris CGA009 2692002 NP_948780.1 CDS RPA3441 NC_005296.1 3882893 3883822 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3882893..3883822 Rhodopseudomonas palustris CGA009 2690603 NP_948781.1 CDS RPA3442 NC_005296.1 3883848 3884624 R cyclase complement(3883848..3884624) Rhodopseudomonas palustris CGA009 2690598 NP_948782.1 CDS RPA3443 NC_005296.1 3884651 3885640 R isomerase/decarboxylase complement(3884651..3885640) Rhodopseudomonas palustris CGA009 2692024 NP_948783.1 CDS RPA3444 NC_005296.1 3885768 3886478 D GntR family transcriptional regulator 3885768..3886478 Rhodopseudomonas palustris CGA009 2690361 NP_948784.1 CDS RPA3445 NC_005296.1 3886503 3888224 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; AMP-dependent synthetase/ligase complement(3886503..3888224) Rhodopseudomonas palustris CGA009 2690642 NP_948785.1 CDS RPA3446 NC_005296.1 3888385 3889272 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 3-hydroxyisobutyrate dehydrogenase complement(3888385..3889272) Rhodopseudomonas palustris CGA009 2690659 NP_948786.1 CDS RPA3447 NC_005296.1 3889306 3890379 R catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA; 3-hydroxyisobutyryl-CoA hydrolase complement(3889306..3890379) Rhodopseudomonas palustris CGA009 2690690 NP_948787.1 CDS RPA3448 NC_005296.1 3890376 3891533 R acyl-CoA dehydrogenase complement(3890376..3891533) Rhodopseudomonas palustris CGA009 2688996 NP_948788.1 CDS RPA3449 NC_005296.1 3891530 3891949 R twitching motility protein PilT complement(3891530..3891949) Rhodopseudomonas palustris CGA009 2689014 NP_948789.1 CDS RPA3450 NC_005296.1 3892228 3893724 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methylmalonate-semialdehyde dehydrogenase complement(3892228..3893724) Rhodopseudomonas palustris CGA009 2689046 NP_948790.1 CDS RPA3451 NC_005296.1 3893884 3894552 R TetR family transcriptional regulator complement(3893884..3894552) Rhodopseudomonas palustris CGA009 2688993 NP_948791.1 CDS RPA3452 NC_005296.1 3894626 3895201 R phenylacetic acid degradation-like protein complement(3894626..3895201) Rhodopseudomonas palustris CGA009 2690369 NP_948792.1 CDS RPA3453 NC_005296.1 3895343 3896113 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3895343..3896113 Rhodopseudomonas palustris CGA009 2688921 NP_948793.1 CDS RPA3454 NC_005296.1 3896238 3897524 D MFS family transporter 3896238..3897524 Rhodopseudomonas palustris CGA009 2692053 NP_948794.1 CDS RPA3455 NC_005296.1 3897573 3899132 R methylmalonyl-CoA decarboxylase subunit alpha complement(3897573..3899132) Rhodopseudomonas palustris CGA009 2692064 NP_948795.1 CDS RPA3457 NC_005296.1 3900286 3900507 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; biotin/lipoyl attachment protein 3900286..3900507 Rhodopseudomonas palustris CGA009 2689543 NP_948796.1 CDS RPA3458 NC_005296.1 3900691 3901851 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; TRAP dicarboxylate family transporter subunit DctP 3900691..3901851 Rhodopseudomonas palustris CGA009 2689969 NP_948797.1 CDS RPA3459 NC_005296.1 3901879 3903945 D TRAP dicarboxylate family transporter subunit DctM/Q 3901879..3903945 Rhodopseudomonas palustris CGA009 2689717 NP_948798.1 CDS RPA3460 NC_005296.1 3904066 3904620 D hypothetical protein 3904066..3904620 Rhodopseudomonas palustris CGA009 2689732 NP_948799.1 CDS RPA3461 NC_005296.1 3904676 3905041 R hypothetical protein complement(3904676..3905041) Rhodopseudomonas palustris CGA009 2692105 NP_948800.1 CDS RPA3462 NC_005296.1 3905038 3906252 R thiolase complement(3905038..3906252) Rhodopseudomonas palustris CGA009 2692113 NP_948801.1 CDS RPA3463 NC_005296.1 3906356 3907573 R hypothetical protein complement(3906356..3907573) Rhodopseudomonas palustris CGA009 2690708 NP_948802.1 CDS RPA3464 NC_005296.1 3907766 3908650 D hypothetical protein 3907766..3908650 Rhodopseudomonas palustris CGA009 2692491 NP_948803.1 CDS RPA3465 NC_005296.1 3908870 3910396 R long-chain-fatty-acid CoA ligase complement(3908870..3910396) Rhodopseudomonas palustris CGA009 2690741 NP_948804.1 CDS RPA3466 NC_005296.1 3910417 3911586 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(3910417..3911586) Rhodopseudomonas palustris CGA009 2690768 NP_948805.1 CDS RPA3467 NC_005296.1 3911835 3912899 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; NAD-dependent epimerase/dehydratase complement(3911835..3912899) Rhodopseudomonas palustris CGA009 2692119 NP_948806.1 CDS RPA3468 NC_005296.1 3913033 3913959 R sugar ABC transporter permease complement(3913033..3913959) Rhodopseudomonas palustris CGA009 2692120 NP_948807.1 CDS RPA3469 NC_005296.1 3913952 3914905 R binding-protein-dependent transport system inner membrane protein complement(3913952..3914905) Rhodopseudomonas palustris CGA009 2692162 NP_948808.1 CDS RPA3470 NC_005296.1 3915123 3916448 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; sugar uptake ABC transporter periplasmic solute-binding protein complement(3915123..3916448) Rhodopseudomonas palustris CGA009 2692183 NP_948809.1 CDS RPA3471 NC_005296.1 3916525 3917589 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter ATP-binding protein complement(3916525..3917589) Rhodopseudomonas palustris CGA009 2692208 NP_948810.1 CDS ilvD1 NC_005296.1 3917826 3919634 D catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 3917826..3919634 Rhodopseudomonas palustris CGA009 2690382 NP_948811.1 CDS ucpA NC_005296.1 3919768 3920502 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; short-chain dehydrogenase/reductase SDR 3919768..3920502 Rhodopseudomonas palustris CGA009 2692229 NP_948812.1 CDS fabG4 NC_005296.1 3920586 3921335 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; short-chain dehydrogenase/reductase SDR 3920586..3921335 Rhodopseudomonas palustris CGA009 2692233 NP_948813.1 CDS RPA3475 NC_005296.1 3921408 3922367 R transposase complement(3921408..3922367) Rhodopseudomonas palustris CGA009 2692238 NP_948814.1 CDS RPA3476 NC_005296.1 3922797 3923591 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; energy transducer TonB complement(3922797..3923591) Rhodopseudomonas palustris CGA009 2692287 NP_948815.1 CDS exbD5 NC_005296.1 3923696 3924145 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; enterochelin uptake protein ExbD complement(3923696..3924145) Rhodopseudomonas palustris CGA009 2690774 NP_948816.1 CDS exbB5 NC_005296.1 3924149 3924853 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; enterochelin uptake protein ExbB complement(3924149..3924853) Rhodopseudomonas palustris CGA009 2692316 NP_948817.1 CDS RPA3479 NC_005296.1 3925057 3925746 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hydroxylase complement(3925057..3925746) Rhodopseudomonas palustris CGA009 2690788 NP_948818.1 CDS fiu NC_005296.1 3925772 3927973 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; outer membrane receptor for iron transport complement(3925772..3927973) Rhodopseudomonas palustris CGA009 2690802 NP_948819.1 CDS RPA3481 NC_005296.1 3928437 3928679 R hypothetical protein complement(3928437..3928679) Rhodopseudomonas palustris CGA009 2692342 NP_948820.1 CDS RPA3482 NC_005296.1 3929016 3930239 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 3929016..3930239 Rhodopseudomonas palustris CGA009 2690801 NP_948821.1 CDS RPA3483 NC_005296.1 3930242 3933379 D RND efflux transporter 3930242..3933379 Rhodopseudomonas palustris CGA009 2690836 NP_948822.1 CDS RPA3484 NC_005296.1 3933422 3934063 R twitching motility protein PilT complement(3933422..3934063) Rhodopseudomonas palustris CGA009 2690867 NP_948823.1 CDS RPA3485 NC_005296.1 3934674 3935867 R racemase complement(3934674..3935867) Rhodopseudomonas palustris CGA009 2692399 NP_948824.1 CDS RPA3486 NC_005296.1 3935977 3937188 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched-chain amino acid transport system substrate-binding protein complement(3935977..3937188) Rhodopseudomonas palustris CGA009 2692425 NP_948825.1 CDS RPA3487 NC_005296.1 3937437 3938051 R hypothetical protein complement(3937437..3938051) Rhodopseudomonas palustris CGA009 2692423 NP_948826.1 CDS RPA3488 NC_005296.1 3938057 3939562 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; peptidase S1C Do complement(3938057..3939562) Rhodopseudomonas palustris CGA009 2690907 NP_948827.1 CDS RPA3489 NC_005296.1 3939777 3939977 R hypothetical protein complement(3939777..3939977) Rhodopseudomonas palustris CGA009 2692524 NP_948828.1 CDS hflC NC_005296.1 3940220 3941146 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; HflC protein complement(3940220..3941146) Rhodopseudomonas palustris CGA009 2690412 NP_948829.1 CDS hflK NC_005296.1 3941143 3942294 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; HflK protein complement(3941143..3942294) Rhodopseudomonas palustris CGA009 2689765 NP_948830.1 CDS dyr NC_005296.1 3942439 3942981 R dihydrofolate reductase complement(3942439..3942981) Rhodopseudomonas palustris CGA009 2688825 NP_948831.1 CDS thyA NC_005296.1 3942978 3943772 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(3942978..3943772) Rhodopseudomonas palustris CGA009 2692488 NP_948832.1 CDS RPA3494 NC_005296.1 3943944 3944951 R tripartite tricarboxylate transport(TTT) family subunit TctC complement(3943944..3944951) Rhodopseudomonas palustris CGA009 2693474 NP_948833.1 CDS RPA3495 NC_005296.1 3945053 3946567 R hypothetical protein complement(3945053..3946567) Rhodopseudomonas palustris CGA009 2693362 NP_948834.1 CDS RPA3496 NC_005296.1 3946578 3947078 R tripartite tricarboxylate transport(TTT) family subunit TctB complement(3946578..3947078) Rhodopseudomonas palustris CGA009 2693202 NP_948835.1 CDS RPA3497 NC_005296.1 3947151 3947681 R chromate transporter complement(3947151..3947681) Rhodopseudomonas palustris CGA009 2693216 NP_948836.1 CDS RPA3498 NC_005296.1 3947678 3948274 R chromate transporter complement(3947678..3948274) Rhodopseudomonas palustris CGA009 2693565 NP_948837.1 CDS RPA3499 NC_005296.1 3949002 3949538 D hypothetical protein 3949002..3949538 Rhodopseudomonas palustris CGA009 2693480 NP_948838.1 CDS fumC NC_005296.1 3949644 3951077 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 3949644..3951077 Rhodopseudomonas palustris CGA009 2693242 NP_948839.1 CDS RPA3501 NC_005296.1 3951527 3951805 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 3951527..3951805 Rhodopseudomonas palustris CGA009 2693502 NP_948840.1 CDS RPA3502 NC_005296.1 3951826 3955641 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3951826..3955641) Rhodopseudomonas palustris CGA009 2693507 NP_948841.1 CDS RPA3503 NC_005296.1 3955777 3957240 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; D-lactate dehydrogenase oxidoreductase complement(3955777..3957240) Rhodopseudomonas palustris CGA009 2691679 NP_948842.1 CDS RPA3504 NC_005296.1 3957325 3957804 D thioesterase 3957325..3957804 Rhodopseudomonas palustris CGA009 2693175 NP_948843.1 CDS RPA3505 NC_005296.1 3957801 3957974 R hypothetical protein complement(3957801..3957974) Rhodopseudomonas palustris CGA009 2693382 NP_948844.1 CDS uvrD NC_005296.1 3958287 3960833 D UvrD/REP helicase 3958287..3960833 Rhodopseudomonas palustris CGA009 2693621 NP_948845.1 CDS RPA3507 NC_005296.1 3960833 3961117 D hypothetical protein 3960833..3961117 Rhodopseudomonas palustris CGA009 2691062 NP_948846.1 CDS RPA3508 NC_005296.1 3961413 3962333 D ABC transporter ATP-binding protein 3961413..3962333 Rhodopseudomonas palustris CGA009 2692776 NP_948847.1 CDS RPA3509 NC_005296.1 3962336 3963097 D hypothetical protein 3962336..3963097 Rhodopseudomonas palustris CGA009 2691053 NP_948848.1 CDS RPA3510 NC_005296.1 3963169 3963516 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(3963169..3963516) Rhodopseudomonas palustris CGA009 2688816 NP_948849.1 CDS RPA3511 NC_005296.1 3963779 3964549 D ErfK/YbiS/YcfS/YnhG protein 3963779..3964549 Rhodopseudomonas palustris CGA009 2691143 NP_948850.1 CDS RPA3512 NC_005296.1 3964611 3966761 R hypothetical protein complement(3964611..3966761) Rhodopseudomonas palustris CGA009 2690597 NP_948851.1 CDS RPA3513 NC_005296.1 3966889 3968661 D FAD dependent oxidoreductase 3966889..3968661 Rhodopseudomonas palustris CGA009 2692766 NP_948852.1 CDS RPA3514 NC_005296.1 3969431 3970366 D ribosomal L11 methyltransferase 3969431..3970366 Rhodopseudomonas palustris CGA009 2692764 NP_948853.1 CDS RPA3515 NC_005296.1 3970781 3972610 D peptidase M24 3970781..3972610 Rhodopseudomonas palustris CGA009 2692753 NP_948854.1 CDS RPA3516 NC_005296.1 3972983 3974269 D MFS family efflux pump 3972983..3974269 Rhodopseudomonas palustris CGA009 2691028 NP_948855.1 CDS dnlJ NC_005296.1 3974463 3976541 R DNA ligase complement(3974463..3976541) Rhodopseudomonas palustris CGA009 2692760 NP_948856.1 CDS RPA3518 NC_005296.1 3976757 3977044 D excinuclease ABC subunit C 3976757..3977044 Rhodopseudomonas palustris CGA009 2692739 NP_948857.1 CDS recN NC_005296.1 3977199 3978884 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; DNA repair protein RecN complement(3977199..3978884) Rhodopseudomonas palustris CGA009 2692737 NP_948858.1 CDS RPA3520 NC_005296.1 3978897 3979805 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; lipoprotein complement(3978897..3979805) Rhodopseudomonas palustris CGA009 2691695 NP_948859.1 CDS lpxC NC_005296.1 3980032 3981087 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(3980032..3981087) Rhodopseudomonas palustris CGA009 2691264 NP_948860.1 CDS ftsZ NC_005296.1 3981341 3983119 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(3981341..3983119) Rhodopseudomonas palustris CGA009 2691959 NP_948861.1 CDS ftsA NC_005296.1 3983213 3984535 R cell division protein FtsA complement(3983213..3984535) Rhodopseudomonas palustris CGA009 2691951 NP_948862.1 CDS ftsQ NC_005296.1 3984532 3985521 R cell division protein FtsQ complement(3984532..3985521) Rhodopseudomonas palustris CGA009 2692718 NP_948863.1 CDS ddlA NC_005296.1 3985840 3986829 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; D-alanine--D-alanine ligase complement(3985840..3986829) Rhodopseudomonas palustris CGA009 2692713 NP_948864.1 CDS RPA3526 NC_005296.1 3986939 3988267 R hypothetical protein complement(3986939..3988267) Rhodopseudomonas palustris CGA009 2692711 NP_948865.1 CDS RPA3527 NC_005296.1 3988434 3989318 D hypothetical protein 3988434..3989318 Rhodopseudomonas palustris CGA009 2692705 NP_948866.1 CDS murB NC_005296.1 3989368 3990342 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(3989368..3990342) Rhodopseudomonas palustris CGA009 2692693 NP_948867.1 CDS murC NC_005296.1 3990383 3991786 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(3990383..3991786) Rhodopseudomonas palustris CGA009 2690988 NP_948868.1 CDS murG NC_005296.1 3991923 3993023 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(3991923..3993023) Rhodopseudomonas palustris CGA009 2691939 NP_948869.1 CDS ftsW NC_005296.1 3993028 3994170 R cell division protein ftsW complement(3993028..3994170) Rhodopseudomonas palustris CGA009 2691940 NP_948870.1 CDS murD NC_005296.1 3994412 3995821 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(3994412..3995821) Rhodopseudomonas palustris CGA009 2690940 NP_948871.1 CDS mraY NC_005296.1 3996009 3997094 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(3996009..3997094) Rhodopseudomonas palustris CGA009 2690943 NP_948872.1 CDS murF NC_005296.1 3997105 3998544 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase complement(3997105..3998544) Rhodopseudomonas palustris CGA009 2690757 NP_948873.1 CDS murE NC_005296.1 3998541 3999998 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(3998541..3999998) Rhodopseudomonas palustris CGA009 2690767 NP_948874.1 CDS RPA3536 NC_005296.1 4000111 4001865 R peptidoglycan glycosyltransferase complement(4000111..4001865) Rhodopseudomonas palustris CGA009 2690754 NP_948875.1 CDS RPA3537 NC_005296.1 4001862 4002245 R hypothetical protein complement(4001862..4002245) Rhodopseudomonas palustris CGA009 2690052 NP_948876.1 CDS mraW NC_005296.1 4002242 4003240 R S-adenosyl-methyltransferase MraW complement(4002242..4003240) Rhodopseudomonas palustris CGA009 2690070 NP_948877.1 CDS RPA3539 NC_005296.1 4003820 4004605 D peptidoglycan binding domain-containing protein 4003820..4004605 Rhodopseudomonas palustris CGA009 2690062 NP_948878.1 CDS RPA3540 NC_005296.1 4005202 4005771 R cell filamentation protein complement(4005202..4005771) Rhodopseudomonas palustris CGA009 2691071 NP_948879.1 CDS RPA3541 NC_005296.1 4005773 4005973 R hypothetical protein complement(4005773..4005973) Rhodopseudomonas palustris CGA009 2691066 NP_948880.1 CDS emrB1 NC_005296.1 4006022 4007614 R EmrB/QacA subfamily drug resistance transporter complement(4006022..4007614) Rhodopseudomonas palustris CGA009 2691075 NP_948881.1 CDS RPA3543 NC_005296.1 4007765 4009033 R multidrug resistance efflux pump complement(4007765..4009033) Rhodopseudomonas palustris CGA009 2691084 NP_948882.1 CDS RPA3544 NC_005296.1 4009215 4009865 D TetR family transcriptional regulator 4009215..4009865 Rhodopseudomonas palustris CGA009 2691097 NP_948883.1 CDS RPA3545 NC_005296.1 4009877 4011184 R hypothetical protein complement(4009877..4011184) Rhodopseudomonas palustris CGA009 2692672 NP_948884.1 CDS RPA3546 NC_005296.1 4011242 4013197 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methyl-accepting chemotaxis receptor/sensory transducer complement(4011242..4013197) Rhodopseudomonas palustris CGA009 2691824 NP_948885.1 CDS RPA3547 NC_005296.1 4013379 4013627 R hypothetical protein complement(4013379..4013627) Rhodopseudomonas palustris CGA009 2691960 NP_948886.1 CDS RPA3548 NC_005296.1 4013663 4016911 R serine protease/outer membrane autotransporter complement(4013663..4016911) Rhodopseudomonas palustris CGA009 2691699 NP_948887.1 CDS RPA3549 NC_005296.1 4017089 4017727 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hydrolase 4017089..4017727 Rhodopseudomonas palustris CGA009 2691703 NP_948888.1 CDS RPA3550 NC_005296.1 4018092 4019861 D coenzyme B12-binding elongator protein 3/MiaB/NifB 4018092..4019861 Rhodopseudomonas palustris CGA009 2689784 NP_948889.1 CDS RPA3551 NC_005296.1 4019858 4020577 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; short chain dehydrogenase 4019858..4020577 Rhodopseudomonas palustris CGA009 2689782 NP_948890.1 CDS RPA3552 NC_005296.1 4020574 4021392 D short-chain dehydrogenase/reductase 4020574..4021392 Rhodopseudomonas palustris CGA009 2689977 NP_948891.1 CDS RPA3553 NC_005296.1 4021413 4022534 R bile acid:sodium symporter complement(4021413..4022534) Rhodopseudomonas palustris CGA009 2689849 NP_948892.1 CDS arsC2 NC_005296.1 4022698 4023123 R arsenate reductase complement(4022698..4023123) Rhodopseudomonas palustris CGA009 2689982 NP_948893.1 CDS arsC3 NC_005296.1 4023123 4023650 R arsenate reductase complement(4023123..4023650) Rhodopseudomonas palustris CGA009 2692671 NP_948894.1 CDS arsR2 NC_005296.1 4023643 4023999 R ArsR family transcriptional regulator complement(4023643..4023999) Rhodopseudomonas palustris CGA009 2689958 NP_948895.1 CDS RPA3557 NC_005296.1 4024054 4024290 R thiol-disulfide isomerase complement(4024054..4024290) Rhodopseudomonas palustris CGA009 2689928 NP_948896.1 CDS RPA3558 NC_005296.1 4024302 4025351 R permease complement(4024302..4025351) Rhodopseudomonas palustris CGA009 2690073 NP_948897.1 CDS arsR3 NC_005296.1 4025348 4025647 R ArsR family transcriptional regulator complement(4025348..4025647) Rhodopseudomonas palustris CGA009 2690093 NP_948898.1 CDS RPA3560 NC_005296.1 4025789 4026574 D hypothetical protein 4025789..4026574 Rhodopseudomonas palustris CGA009 2690095 NP_948899.1 CDS RPA3561 NC_005296.1 4026812 4027168 D ArsR family transcriptional regulator 4026812..4027168 Rhodopseudomonas palustris CGA009 2692667 NP_948900.1 CDS arsM NC_005296.1 4027158 4028009 D in Rhodopseudomonas palustris this protein confers resistance to arsenite; catalyzes the formation of a number of methylated intermediates from arsenite and SAM producing trimethylarsine; arsenite S-adenosylmethyltransferase 4027158..4028009 Rhodopseudomonas palustris CGA009 2690104 NP_948901.1 CDS RPA3563 NC_005296.1 4028667 4029065 R hypothetical protein complement(4028667..4029065) Rhodopseudomonas palustris CGA009 2689395 NP_948902.1 CDS tnaA NC_005296.1 4029316 4030764 R tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase complement(4029316..4030764) Rhodopseudomonas palustris CGA009 2690118 NP_948903.1 CDS RPA3565 NC_005296.1 4031035 4031754 D ErfK/YbiS/YcfS/YnhG protein 4031035..4031754 Rhodopseudomonas palustris CGA009 2692659 NP_948904.1 CDS RPA3566 NC_005296.1 4031944 4032282 D hypothetical protein 4031944..4032282 Rhodopseudomonas palustris CGA009 2692660 NP_948905.1 CDS RPA3567 NC_005296.1 4032439 4034001 D hypothetical protein 4032439..4034001 Rhodopseudomonas palustris CGA009 2690133 NP_948906.1 CDS RPA3568 NC_005296.1 4034096 4034635 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4034096..4034635) Rhodopseudomonas palustris CGA009 2690150 NP_948907.1 CDS RPA3569 NC_005296.1 4034923 4035465 R hypothetical protein complement(4034923..4035465) Rhodopseudomonas palustris CGA009 2690156 NP_948908.1 CDS RPA3570 NC_005296.1 4035633 4036355 D two-component transcriptional regulator 4035633..4036355 Rhodopseudomonas palustris CGA009 2690155 NP_948909.1 CDS RPA3571 NC_005296.1 4036352 4037686 D two component sensor histidine kinase 4036352..4037686 Rhodopseudomonas palustris CGA009 2690167 NP_948910.1 CDS RPA3572 NC_005296.1 4037705 4039423 R hypothetical protein complement(4037705..4039423) Rhodopseudomonas palustris CGA009 2690175 NP_948911.1 CDS thiO NC_005296.1 4039635 4040612 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glycine oxidase ThiO 4039635..4040612 Rhodopseudomonas palustris CGA009 2690187 NP_948912.1 CDS thiS NC_005296.1 4040603 4040800 D thiamine biosynthesis protein ThiS 4040603..4040800 Rhodopseudomonas palustris CGA009 2690200 NP_948913.1 CDS thiG NC_005296.1 4041053 4041835 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 4041053..4041835 Rhodopseudomonas palustris CGA009 2690192 NP_948914.1 CDS thiE NC_005296.1 4041822 4042430 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; thiamine-phosphate pyrophosphorylase 4041822..4042430 Rhodopseudomonas palustris CGA009 2690186 NP_948915.1 CDS thiC NC_005296.1 4042665 4044665 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 4042665..4044665 Rhodopseudomonas palustris CGA009 2690209 NP_948916.1 CDS RPA3578 NC_005296.1 4044836 4045711 D hypothetical protein 4044836..4045711 Rhodopseudomonas palustris CGA009 2690214 NP_948917.1 CDS RPA3579 NC_005296.1 4045969 4046235 D hypothetical protein 4045969..4046235 Rhodopseudomonas palustris CGA009 2690216 NP_948918.1 CDS RPA3580 NC_005296.1 4046232 4047152 D integrase catalytic subunit 4046232..4047152 Rhodopseudomonas palustris CGA009 2690230 NP_948919.1 CDS RPA3581 NC_005296.1 4047139 4047318 R hypothetical protein complement(4047139..4047318) Rhodopseudomonas palustris CGA009 2690236 NP_948920.1 CDS RPA3582 NC_005296.1 4047439 4047969 R hypothetical protein complement(4047439..4047969) Rhodopseudomonas palustris CGA009 2690233 NP_948921.1 CDS RPA3583 NC_005296.1 4047957 4048295 R hypothetical protein complement(4047957..4048295) Rhodopseudomonas palustris CGA009 2690237 NP_948922.1 CDS RPA3584 NC_005296.1 4048474 4049253 D hypothetical protein 4048474..4049253 Rhodopseudomonas palustris CGA009 2690241 NP_948923.1 CDS RPA3585 NC_005296.1 4049441 4049953 R hypothetical protein complement(4049441..4049953) Rhodopseudomonas palustris CGA009 2690245 NP_948924.1 CDS RPA3586 NC_005296.1 4050261 4050725 R hypothetical protein complement(4050261..4050725) Rhodopseudomonas palustris CGA009 2690249 NP_948925.1 CDS RPA3587 NC_005296.1 4051923 4052207 D hypothetical protein 4051923..4052207 Rhodopseudomonas palustris CGA009 2690255 NP_948926.1 CDS RPA3588 NC_005296.1 4052583 4053875 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4052583..4053875) Rhodopseudomonas palustris CGA009 2690261 NP_948927.1 CDS RPA3589 NC_005296.1 4054172 4054726 D hypothetical protein 4054172..4054726 Rhodopseudomonas palustris CGA009 2690267 NP_948928.1 CDS RPA3590 NC_005296.1 4054719 4055147 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4054719..4055147) Rhodopseudomonas palustris CGA009 2690268 NP_948929.1 CDS RPA3591 NC_005296.1 4055350 4055733 D endoribonuclease L-PSP 4055350..4055733 Rhodopseudomonas palustris CGA009 2690263 NP_948930.1 CDS RPA3592 NC_005296.1 4055953 4057032 D hypothetical protein 4055953..4057032 Rhodopseudomonas palustris CGA009 2690280 NP_948931.1 CDS RPA3593 NC_005296.1 4057138 4057776 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; triple helix repeat-containing collagen 4057138..4057776 Rhodopseudomonas palustris CGA009 2692634 NP_948932.1 CDS RPA3594 NC_005296.1 4057819 4058085 R hypothetical protein complement(4057819..4058085) Rhodopseudomonas palustris CGA009 2690264 NP_948933.1 CDS RPA3595 NC_005296.1 4058240 4058869 D hypothetical protein 4058240..4058869 Rhodopseudomonas palustris CGA009 2690277 NP_948934.1 CDS RPA3596 NC_005296.1 4058884 4060089 R hypothetical protein complement(4058884..4060089) Rhodopseudomonas palustris CGA009 2690285 NP_948935.1 CDS RPA3597 NC_005296.1 4060076 4061734 R hypothetical protein complement(4060076..4061734) Rhodopseudomonas palustris CGA009 2690290 NP_948936.1 CDS RPA3598 NC_005296.1 4061895 4063706 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methyl-accepting chemotaxis receptor/sensory transducer 4061895..4063706 Rhodopseudomonas palustris CGA009 2690296 NP_948937.1 CDS RPA3599 NC_005296.1 4063844 4064386 D hypothetical protein 4063844..4064386 Rhodopseudomonas palustris CGA009 2690309 NP_948938.1 CDS bfr NC_005296.1 4064442 4064924 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; bacterioferritin complement(4064442..4064924) Rhodopseudomonas palustris CGA009 2690302 NP_948939.1 CDS RPA3601 NC_005296.1 4065648 4066007 D hypothetical protein 4065648..4066007 Rhodopseudomonas palustris CGA009 2690307 NP_948940.1 CDS RPA3602 NC_005296.1 4066228 4066512 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4066228..4066512 Rhodopseudomonas palustris CGA009 2689722 NP_948941.1 CDS RPA3603 NC_005296.1 4066589 4068463 R lytic murein transglycosylase complement(4066589..4068463) Rhodopseudomonas palustris CGA009 2689901 NP_948942.1 CDS RPA3604 NC_005296.1 4067833 4068423 R hypothetical protein complement(4067833..4068423) Rhodopseudomonas palustris CGA009 2689892 NP_948943.1 CDS RPA3605 NC_005296.1 4068598 4069368 R catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate; trans-aconitate 2-methyltransferase complement(4068598..4069368) Rhodopseudomonas palustris CGA009 2689981 NP_948944.1 CDS RPA3606 NC_005296.1 4069410 4069688 D hypothetical protein 4069410..4069688 Rhodopseudomonas palustris CGA009 2689897 NP_948945.1 CDS RPA3607 NC_005296.1 4069978 4070232 D AbrB/SpoVT family transcriptional regulator 4069978..4070232 Rhodopseudomonas palustris CGA009 2689726 NP_948946.1 CDS RPA3608 NC_005296.1 4070229 4070630 D twitching motility protein PilT 4070229..4070630 Rhodopseudomonas palustris CGA009 2689735 NP_948947.1 CDS RPA3609 NC_005296.1 4070637 4072286 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein complement(4070637..4072286) Rhodopseudomonas palustris CGA009 2689738 NP_948948.1 CDS RPA3610 NC_005296.1 4072527 4072727 D hypothetical protein 4072527..4072727 Rhodopseudomonas palustris CGA009 2690762 NP_948949.1 CDS RPA3611 NC_005296.1 4072807 4073691 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ErfK/YbiS/YcfS/YnhG protein complement(4072807..4073691) Rhodopseudomonas palustris CGA009 2690689 NP_948950.1 CDS RPA3612 NC_005296.1 4074440 4075474 D hypothetical protein 4074440..4075474 Rhodopseudomonas palustris CGA009 2689796 NP_948951.1 CDS RPA3613 NC_005296.1 4075487 4076347 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; thiosulfate sulfurtransferase complement(4075487..4076347) Rhodopseudomonas palustris CGA009 2689788 NP_948952.1 CDS RPA3614 NC_005296.1 4076464 4076880 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; rhodanese-like protein complement(4076464..4076880) Rhodopseudomonas palustris CGA009 2689832 NP_948953.1 CDS RPA3615 NC_005296.1 4077026 4078201 R hypothetical protein complement(4077026..4078201) Rhodopseudomonas palustris CGA009 2689793 NP_948954.1 CDS RPA3616 NC_005296.1 4078368 4080302 D diguanylate cyclase 4078368..4080302 Rhodopseudomonas palustris CGA009 2691100 NP_948955.1 CDS RPA3617 NC_005296.1 4080472 4080726 D hypothetical protein 4080472..4080726 Rhodopseudomonas palustris CGA009 2691112 NP_948956.1 CDS RPA3618 NC_005296.1 4080841 4081683 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ATPase 4080841..4081683 Rhodopseudomonas palustris CGA009 2690779 NP_948957.1 CDS vanA NC_005296.1 4082101 4083144 D vanillate O-demethylase oxygenase iron-sulfur subunit 4082101..4083144 Rhodopseudomonas palustris CGA009 2690778 NP_948958.1 CDS vanR NC_005296.1 4083148 4083903 D GntR family transcriptional regulator 4083148..4083903 Rhodopseudomonas palustris CGA009 2690771 NP_948959.1 CDS vanB NC_005296.1 4083934 4084926 D vanillate O-demethylase oxidoreductase 4083934..4084926 Rhodopseudomonas palustris CGA009 2690790 NP_948960.1 CDS RPA3622 NC_005296.1 4085029 4085313 R hypothetical protein complement(4085029..4085313) Rhodopseudomonas palustris CGA009 2690693 NP_948961.1 CDS RPA3623 NC_005296.1 4085453 4086049 R N-acetyltransferase GCN5 complement(4085453..4086049) Rhodopseudomonas palustris CGA009 2690694 NP_948962.1 CDS RPA3624 NC_005296.1 4086198 4087127 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; gluconolactonase complement(4086198..4087127) Rhodopseudomonas palustris CGA009 2690696 NP_948963.1 CDS RPA3625 NC_005296.1 4087553 4088125 D excinuclease ABC subunit C 4087553..4088125 Rhodopseudomonas palustris CGA009 2690325 NP_948964.1 CDS RPA3626 NC_005296.1 4088910 4089164 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4088910..4089164) Rhodopseudomonas palustris CGA009 2690330 NP_948965.1 CDS RPA3627 NC_005296.1 4089161 4089637 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glutathione peroxidase complement(4089161..4089637) Rhodopseudomonas palustris CGA009 2690329 NP_948966.1 CDS RPA3628 NC_005296.1 4089656 4091053 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(4089656..4091053) Rhodopseudomonas palustris CGA009 2690326 NP_948967.1 CDS RPA3629 NC_005296.1 4091125 4091382 R hypothetical protein complement(4091125..4091382) Rhodopseudomonas palustris CGA009 2690332 NP_948968.1 CDS RPA3630 NC_005296.1 4091519 4092508 D proline iminopeptidase 4091519..4092508 Rhodopseudomonas palustris CGA009 2692619 NP_948969.1 CDS RPA3631 NC_005296.1 4092518 4093291 R glucose dehydrogenase complement(4092518..4093291) Rhodopseudomonas palustris CGA009 2690342 NP_948970.1 CDS RPA3632 NC_005296.1 4093389 4093871 D MarR family transcriptional regulator 4093389..4093871 Rhodopseudomonas palustris CGA009 2692617 NP_948971.1 CDS RPA3633 NC_005296.1 4093891 4094565 D hypothetical protein 4093891..4094565 Rhodopseudomonas palustris CGA009 2689906 NP_948972.1 CDS tal NC_005296.1 4094709 4097633 D catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; catalyzes isomerization of glucose 6-phosphate and fructose 6-phosphate; bifunctional transaldolase/phosoglucose isomerase 4094709..4097633 Rhodopseudomonas palustris CGA009 2692612 NP_948973.1 CDS gnd NC_005296.1 4097820 4098860 D similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 4097820..4098860 Rhodopseudomonas palustris CGA009 2689746 NP_948974.1 CDS zwf NC_005296.1 4098857 4100371 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 4098857..4100371 Rhodopseudomonas palustris CGA009 2691159 NP_948975.1 CDS pgl NC_005296.1 4100374 4101111 D 6-phosphogluconolactonase 4100374..4101111 Rhodopseudomonas palustris CGA009 2691158 NP_948976.1 CDS RPA3638 NC_005296.1 4101080 4101643 D carbohydrate kinase thermoresistant glucokinase 4101080..4101643 Rhodopseudomonas palustris CGA009 2691152 NP_948977.1 CDS cof NC_005296.1 4101767 4102585 D cof family hydrolase 4101767..4102585 Rhodopseudomonas palustris CGA009 2690678 NP_948978.1 CDS RPA3640 NC_005296.1 4102582 4104390 R glycoside hydrolase family protein complement(4102582..4104390) Rhodopseudomonas palustris CGA009 2691167 NP_948979.1 CDS malQ NC_005296.1 4104395 4106347 R 4-alpha-glucanotransferase complement(4104395..4106347) Rhodopseudomonas palustris CGA009 2691172 NP_948980.1 CDS RPA3642 NC_005296.1 4106445 4108511 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; alpha amylase 4106445..4108511 Rhodopseudomonas palustris CGA009 2691169 NP_948981.1 CDS RPA3643 NC_005296.1 4108522 4111824 D trehalose synthase 4108522..4111824 Rhodopseudomonas palustris CGA009 2691173 NP_948982.1 CDS glgB NC_005296.1 4111821 4113971 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 4111821..4113971 Rhodopseudomonas palustris CGA009 2690661 NP_948983.1 CDS glgX NC_005296.1 4114210 4116291 D glycogen debranching protein GlgX 4114210..4116291 Rhodopseudomonas palustris CGA009 2691176 NP_948984.1 CDS RPA3646 NC_005296.1 4116288 4118054 D maltooligosyltrehalose trehalohydrolase 4116288..4118054 Rhodopseudomonas palustris CGA009 2691188 NP_948985.1 CDS RPA3647 NC_005296.1 4118054 4120840 D malto-oligosyltrehalose synthase 4118054..4120840 Rhodopseudomonas palustris CGA009 2692792 NP_948986.1 CDS RPA3648 NC_005296.1 4121257 4121565 R hypothetical protein complement(4121257..4121565) Rhodopseudomonas palustris CGA009 2692802 NP_948987.1 CDS RPA3649 NC_005296.1 4121610 4121906 D hypothetical protein 4121610..4121906 Rhodopseudomonas palustris CGA009 2692804 NP_948988.1 CDS ligD NC_005296.1 4122046 4124790 R catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase complement(4122046..4124790) Rhodopseudomonas palustris CGA009 2692806 NP_948989.1 CDS RPA3651 NC_005296.1 4124924 4125805 D Ku domain-containing protein 4124924..4125805 Rhodopseudomonas palustris CGA009 2692817 NP_948990.1 CDS RPA3652 NC_005296.1 4126028 4126426 R hypothetical protein complement(4126028..4126426) Rhodopseudomonas palustris CGA009 2692824 NP_948991.1 CDS RPA3653 NC_005296.1 4126487 4126747 R SirA-like protein complement(4126487..4126747) Rhodopseudomonas palustris CGA009 2691183 NP_948992.1 CDS mobA NC_005296.1 4126878 4127498 D in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 4126878..4127498 Rhodopseudomonas palustris CGA009 2691177 NP_948993.1 CDS RPA3655 NC_005296.1 4127608 4128660 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; alcohol dehydrogenase complement(4127608..4128660) Rhodopseudomonas palustris CGA009 2690783 NP_948994.1 CDS RPA3656 NC_005296.1 4128739 4129728 R hypothetical protein complement(4128739..4129728) Rhodopseudomonas palustris CGA009 2690791 NP_948995.1 CDS fadD2 NC_005296.1 4129813 4131375 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 4129813..4131375 Rhodopseudomonas palustris CGA009 2690793 NP_948996.1 CDS ureF NC_005296.1 4131439 4132374 R urease accessory protein UreF complement(4131439..4132374) Rhodopseudomonas palustris CGA009 2690658 NP_948997.1 CDS RPA3659 NC_005296.1 4132804 4133103 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4132804..4133103) Rhodopseudomonas palustris CGA009 2690813 NP_948998.1 CDS ureC NC_005296.1 4133317 4135029 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha complement(4133317..4135029) Rhodopseudomonas palustris CGA009 2690811 NP_948999.1 CDS RPA3661 NC_005296.1 4135026 4135562 R metal dependent phosphohydrolase complement(4135026..4135562) Rhodopseudomonas palustris CGA009 2692841 NP_949000.1 CDS ureB NC_005296.1 4135562 4135867 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta complement(4135562..4135867) Rhodopseudomonas palustris CGA009 2692843 NP_949001.1 CDS ureA NC_005296.1 4136029 4136331 R UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma complement(4136029..4136331) Rhodopseudomonas palustris CGA009 2692851 NP_949002.1 CDS ureD NC_005296.1 4136378 4137295 R urease accessory protein UreD complement(4136378..4137295) Rhodopseudomonas palustris CGA009 2692854 NP_949003.1 CDS RPA3665 NC_005296.1 4137494 4138189 R ABC transporter ATP-binding protein complement(4137494..4138189) Rhodopseudomonas palustris CGA009 2692865 NP_949004.1 CDS RPA3666 NC_005296.1 4138409 4139173 R ABC transporter ATP-binding protein complement(4138409..4139173) Rhodopseudomonas palustris CGA009 2692867 NP_949005.1 CDS RPA3667 NC_005296.1 4139170 4140369 R inner-membrane translocator complement(4139170..4140369) Rhodopseudomonas palustris CGA009 2692871 NP_949006.1 CDS RPA3668 NC_005296.1 4140443 4142056 R inner-membrane translocator complement(4140443..4142056) Rhodopseudomonas palustris CGA009 2692877 NP_949007.1 CDS RPA3669 NC_005296.1 4142166 4143488 R Citation: O'Hara et al. (1999) EMBO J. 18:5175-86 and Wilson et al. EMBO J. (1993) 12:3637-42; observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein complement(4142166..4143488) Rhodopseudomonas palustris CGA009 2690349 NP_949008.1 CDS RPA3670 NC_005296.1 4143976 4145400 D ATP-dependent RNA helicase 4143976..4145400 Rhodopseudomonas palustris CGA009 2690344 NP_949009.1 CDS infA NC_005296.1 4145425 4145703 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 4145425..4145703 Rhodopseudomonas palustris CGA009 2690356 NP_949010.1 CDS cspA5 NC_005296.1 4145943 4146197 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cold-shock DNA-binding domain-containing protein 4145943..4146197 Rhodopseudomonas palustris CGA009 2690363 NP_949011.1 CDS RPA3673 NC_005296.1 4146311 4146937 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4146311..4146937) Rhodopseudomonas palustris CGA009 2690359 NP_949012.1 CDS RPA3674 NC_005296.1 4146950 4147483 R hypothetical protein complement(4146950..4147483) Rhodopseudomonas palustris CGA009 2690379 NP_949013.1 CDS RPA3675 NC_005296.1 4148391 4148555 D Flp/Fap pilin protein 4148391..4148555 Rhodopseudomonas palustris CGA009 2690384 NP_949014.1 CDS RPA3676 NC_005296.1 4148883 4149407 D peptidase A24A prepilin type IV 4148883..4149407 Rhodopseudomonas palustris CGA009 2690396 NP_949015.1 CDS RPA3677 NC_005296.1 4149514 4150095 D hypothetical protein 4149514..4150095 Rhodopseudomonas palustris CGA009 2691910 NP_949016.1 CDS RPA3678 NC_005296.1 4150110 4151552 D type II and III secretion system protein 4150110..4151552 Rhodopseudomonas palustris CGA009 2692883 NP_949017.1 CDS RPA3679 NC_005296.1 4151572 4152300 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; pilus assembly protein cpaD 4151572..4152300 Rhodopseudomonas palustris CGA009 2692886 NP_949018.1 CDS RPA3680 NC_005296.1 4152297 4153568 D pilus assembly protein cpaE 4152297..4153568 Rhodopseudomonas palustris CGA009 2692894 NP_949019.1 CDS RPA3681 NC_005296.1 4153661 4155043 D type II secretion system protein E 4153661..4155043 Rhodopseudomonas palustris CGA009 2692608 NP_949020.1 CDS RPA3682 NC_005296.1 4155056 4156030 D type II secretion system protein 4155056..4156030 Rhodopseudomonas palustris CGA009 2692610 NP_949021.1 CDS RPA3683 NC_005296.1 4156039 4157013 D type II secretion system protein 4156039..4157013 Rhodopseudomonas palustris CGA009 2692611 NP_949022.1 CDS RPA3684 NC_005296.1 4157037 4157846 R TPR repeat-containing protein complement(4157037..4157846) Rhodopseudomonas palustris CGA009 2692912 NP_949023.1 CDS RPA3685 NC_005296.1 4157949 4159331 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; leucyl aminopeptidase 4157949..4159331 Rhodopseudomonas palustris CGA009 2692916 NP_949024.1 CDS RPA3686 NC_005296.1 4159324 4160169 D NLP/P60 4159324..4160169 Rhodopseudomonas palustris CGA009 2692924 NP_949025.1 CDS RPA3687 NC_005296.1 4160153 4160791 R nucleoside diphosphate pyrophosphatase complement(4160153..4160791) Rhodopseudomonas palustris CGA009 2692927 NP_949026.1 CDS RPA3688 NC_005296.1 4160799 4162436 R peptide ABC transporter ATP-binding protein complement(4160799..4162436) Rhodopseudomonas palustris CGA009 2692149 NP_949027.1 CDS RPA3689 NC_005296.1 4162442 4163620 R binding-protein-dependent transport system inner membrane protein complement(4162442..4163620) Rhodopseudomonas palustris CGA009 2692152 NP_949028.1 CDS RPA3690 NC_005296.1 4163620 4164729 R binding-protein-dependent transport systems inner membrane component complement(4163620..4164729) Rhodopseudomonas palustris CGA009 2692930 NP_949029.1 CDS RPA3691 NC_005296.1 4164731 4166596 R family 5 extracellular solute-binding protein complement(4164731..4166596) Rhodopseudomonas palustris CGA009 2692163 NP_949030.1 CDS RPA3692 NC_005296.1 4166611 4168470 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; peptide ABC transporter periplasmic peptide-binding protein complement(4166611..4168470) Rhodopseudomonas palustris CGA009 2691198 NP_949031.1 CDS RPA3693 NC_005296.1 4168719 4169273 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cytochrome c complement(4168719..4169273) Rhodopseudomonas palustris CGA009 2688884 NP_949032.1 CDS kdsB NC_005296.1 4169473 4170210 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 4169473..4170210 Rhodopseudomonas palustris CGA009 2691528 NP_949033.1 CDS RPA3695 NC_005296.1 4170282 4171124 D catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; prephenate dehydratase 4170282..4171124 Rhodopseudomonas palustris CGA009 2691518 NP_949034.1 CDS RPA3696 NC_005296.1 4171164 4171790 R TetR family transcriptional regulator complement(4171164..4171790) Rhodopseudomonas palustris CGA009 2691485 NP_949035.1 CDS emrA NC_005296.1 4171914 4173092 D multidrug resistance protein 4171914..4173092 Rhodopseudomonas palustris CGA009 2691588 NP_949036.1 CDS emrB2 NC_005296.1 4173089 4174621 D MFS family drug efflux pump 4173089..4174621 Rhodopseudomonas palustris CGA009 2690408 NP_949037.1 CDS RPA3699 NC_005296.1 4174638 4175366 D iron-chelator utilization protein 4174638..4175366 Rhodopseudomonas palustris CGA009 2690418 NP_949038.1 CDS RPA3700 NC_005296.1 4175434 4176450 R luciferase-like protein complement(4175434..4176450) Rhodopseudomonas palustris CGA009 2690417 NP_949039.1 CDS metF NC_005296.1 4176861 4177748 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 5,10-methylenetetrahydrofolate reductase 4176861..4177748 Rhodopseudomonas palustris CGA009 2690430 NP_949040.1 CDS metH NC_005296.1 4177761 4181642 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4177761..4181642 Rhodopseudomonas palustris CGA009 2690429 NP_949041.1 CDS RPA3703 NC_005296.1 4181818 4182099 D hypothetical protein 4181818..4182099 Rhodopseudomonas palustris CGA009 2690432 NP_949042.1 CDS RPA3704 NC_005296.1 4182776 4183063 D excinuclease ABC subunit C 4182776..4183063 Rhodopseudomonas palustris CGA009 2692169 NP_949043.1 CDS glpK NC_005296.1 4183381 4184883 R glycerol kinase complement(4183381..4184883) Rhodopseudomonas palustris CGA009 2692175 NP_949044.1 CDS nasT NC_005296.1 4185092 4185676 D two-component response regulator:antitermination factor NasT 4185092..4185676 Rhodopseudomonas palustris CGA009 2692174 NP_949045.1 CDS RPA3707 NC_005296.1 4185673 4186833 D nitrate transporter component nrtA 4185673..4186833 Rhodopseudomonas palustris CGA009 2691839 NP_949046.1 CDS RPA3708 NC_005296.1 4186852 4187292 D globin-like protein 4186852..4187292 Rhodopseudomonas palustris CGA009 2691818 NP_949047.1 CDS RPA3709 NC_005296.1 4187646 4188071 D hemoprotein 4187646..4188071 Rhodopseudomonas palustris CGA009 2691848 NP_949048.1 CDS nirA NC_005296.1 4188114 4189886 D ferredoxin-dependent assimilatory nitrite reductase; ferredoxin-nitrite reductase 4188114..4189886 Rhodopseudomonas palustris CGA009 2692179 NP_949049.1 CDS RPA3711 NC_005296.1 4189883 4191502 D Catalyzes the reduction of sulfite to sulfide, an essential step in the anaerobic sulfate-respiration pathway; sulfite reductase 4189883..4191502 Rhodopseudomonas palustris CGA009 2692177 NP_949050.1 CDS pimD NC_005296.1 4192563 4193705 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; pimeloyl-CoA dehydrogenase small subunit complement(4192563..4193705) Rhodopseudomonas palustris CGA009 2691811 NP_949051.1 CDS pimC NC_005296.1 4193874 4195064 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; pimeloyl-CoA dehydrogenase large subunit complement(4193874..4195064) Rhodopseudomonas palustris CGA009 2691814 NP_949052.1 CDS pimB NC_005296.1 4195279 4196466 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acetyl-CoA acetyltransferase complement(4195279..4196466) Rhodopseudomonas palustris CGA009 2692199 NP_949053.1 CDS pimA NC_005296.1 4196498 4198156 R AMP-dependent synthetase/ligase complement(4196498..4198156) Rhodopseudomonas palustris CGA009 2692185 NP_949054.1 CDS pimF NC_005296.1 4198335 4200434 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; enoyl-CoA hydratase complement(4198335..4200434) Rhodopseudomonas palustris CGA009 2690821 NP_949055.1 CDS RPA3718 NC_005296.1 4200567 4201433 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; IclR family transcriptional regulator 4200567..4201433 Rhodopseudomonas palustris CGA009 2690819 NP_949056.1 CDS ilvG NC_005296.1 4201464 4202264 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; high-affinity branched-chain amino acid transport system ATP-binding protein 4201464..4202264 Rhodopseudomonas palustris CGA009 2692206 NP_949057.1 CDS ilvF NC_005296.1 4202261 4202974 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched-chain amino acid transport system ATP-binding protein 4202261..4202974 Rhodopseudomonas palustris CGA009 2692587 NP_949058.1 CDS RPA3721 NC_005296.1 4202985 4203863 D ABC transporter permease 4202985..4203863 Rhodopseudomonas palustris CGA009 2692589 NP_949059.1 CDS ilvM NC_005296.1 4203866 4204885 D branched-chain amino acid transport system permease 4203866..4204885 Rhodopseudomonas palustris CGA009 2690433 NP_949060.1 CDS RPA3723 NC_005296.1 4205084 4206319 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; leucine/isoleucine/valine-binding protein 4205084..4206319 Rhodopseudomonas palustris CGA009 2690450 NP_949061.1 CDS ilvK NC_005296.1 4206500 4207732 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; high-affinity leucine-isoleucine-valine transport system periplasmic binding protein 4206500..4207732 Rhodopseudomonas palustris CGA009 2690455 NP_949062.1 CDS ilvJ NC_005296.1 4208080 4209309 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; leucine/isoleucine/valine-binding protein 4208080..4209309 Rhodopseudomonas palustris CGA009 2690457 NP_949063.1 CDS RPA3726 NC_005296.1 4209434 4209934 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4209434..4209934) Rhodopseudomonas palustris CGA009 2691403 NP_949064.1 CDS RPA3727 NC_005296.1 4210179 4211219 D magnesium/cobalt transporter CorA 4210179..4211219 Rhodopseudomonas palustris CGA009 2692213 NP_949065.1 CDS RPA3728 NC_005296.1 4211408 4213420 D hypothetical protein 4211408..4213420 Rhodopseudomonas palustris CGA009 2692215 NP_949066.1 CDS RPA3729 NC_005296.1 4213681 4214853 R peptidase M20D amidohydrolase complement(4213681..4214853) Rhodopseudomonas palustris CGA009 2692227 NP_949067.1 CDS RPA3730 NC_005296.1 4214978 4216597 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; GMC-type oxidoreductase 4214978..4216597 Rhodopseudomonas palustris CGA009 2690453 NP_949068.1 CDS RPA3731 NC_005296.1 4216597 4217499 D alpha/beta hydrolase 4216597..4217499 Rhodopseudomonas palustris CGA009 2690469 NP_949069.1 CDS argD1 NC_005296.1 4217524 4218915 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; class III aminotransferase complement(4217524..4218915) Rhodopseudomonas palustris CGA009 2690468 NP_949070.1 CDS RPA3733 NC_005296.1 4219247 4221859 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4219247..4221859) Rhodopseudomonas palustris CGA009 2690471 NP_949071.1 CDS ispH NC_005296.1 4222189 4223109 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4222189..4223109 Rhodopseudomonas palustris CGA009 2690489 NP_949072.1 CDS RPA3735 NC_005296.1 4223149 4224309 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; radical SAM family protein 4223149..4224309 Rhodopseudomonas palustris CGA009 2690496 NP_949073.1 CDS pstS2 NC_005296.1 4224384 4225388 R phosphate transport system substrate-binding protein complement(4224384..4225388) Rhodopseudomonas palustris CGA009 2690502 NP_949074.1 CDS RPA3737 NC_005296.1 4225422 4226666 R phosphonoacetate hydrolase complement(4225422..4226666) Rhodopseudomonas palustris CGA009 2692241 NP_949075.1 CDS RPA3738 NC_005296.1 4226824 4227714 D LysR family transcriptional regulator 4226824..4227714 Rhodopseudomonas palustris CGA009 2692236 NP_949076.1 CDS RPA3739 NC_005296.1 4227805 4228548 R hypothetical protein complement(4227805..4228548) Rhodopseudomonas palustris CGA009 2693018 NP_949077.1 CDS sqhC NC_005296.1 4228545 4230506 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; squalene cyclase complement(4228545..4230506) Rhodopseudomonas palustris CGA009 2693021 NP_949078.1 CDS RPA3741 NC_005296.1 4230540 4231796 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; amine oxidase complement(4230540..4231796) Rhodopseudomonas palustris CGA009 2693023 NP_949079.1 CDS RPA3742 NC_005296.1 4231796 4232635 R squalene/phytoene synthase complement(4231796..4232635) Rhodopseudomonas palustris CGA009 2692931 NP_949080.1 CDS RPA3743 NC_005296.1 4232632 4233510 R squalene/phytoene synthase complement(4232632..4233510) Rhodopseudomonas palustris CGA009 2691711 NP_949081.1 CDS RPA3744 NC_005296.1 4233715 4233954 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4233715..4233954) Rhodopseudomonas palustris CGA009 2692918 NP_949082.1 CDS RPA3745 NC_005296.1 4234344 4234847 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4234344..4234847 Rhodopseudomonas palustris CGA009 2692951 NP_949083.1 CDS RPA3746 NC_005296.1 4234942 4237311 R RND superfamily transporter complement(4234942..4237311) Rhodopseudomonas palustris CGA009 2690503 NP_949084.1 CDS eutC NC_005296.1 4237519 4238286 R catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit complement(4237519..4238286) Rhodopseudomonas palustris CGA009 2690514 NP_949085.1 CDS RPA3748 NC_005296.1 4238294 4239877 R radical SAM family protein complement(4238294..4239877) Rhodopseudomonas palustris CGA009 2690516 NP_949086.1 CDS eutB NC_005296.1 4240105 4241487 R ethanolamine ammonia lyase large subunit complement(4240105..4241487) Rhodopseudomonas palustris CGA009 2690748 NP_949087.1 CDS RPA3750 NC_005296.1 4241549 4243252 R methyl-accepting chemotaxis sensory transducer complement(4241549..4243252) Rhodopseudomonas palustris CGA009 2690747 NP_949088.1 CDS RPA3751 NC_005296.1 4243306 4243761 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4243306..4243761) Rhodopseudomonas palustris CGA009 2691716 NP_949089.1 CDS RPA3752 NC_005296.1 4243965 4244843 R transglutaminase complement(4243965..4244843) Rhodopseudomonas palustris CGA009 2692946 NP_949090.1 CDS RPA3753 NC_005296.1 4244840 4247341 R hypothetical protein complement(4244840..4247341) Rhodopseudomonas palustris CGA009 2690737 NP_949091.1 CDS RPA3754 NC_005296.1 4247367 4250762 R transglutaminase complement(4247367..4250762) Rhodopseudomonas palustris CGA009 2692245 NP_949092.1 CDS hpcH NC_005296.1 4251014 4251790 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; HpcH/HpaI aldolase complement(4251014..4251790) Rhodopseudomonas palustris CGA009 2692247 NP_949093.1 CDS RPA3756 NC_005296.1 4251974 4253059 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; malate dehydrogenase complement(4251974..4253059) Rhodopseudomonas palustris CGA009 2692260 NP_949094.1 CDS RPA3757 NC_005296.1 4253100 4253639 R MarR family transcriptional regulator complement(4253100..4253639) Rhodopseudomonas palustris CGA009 2693031 NP_949095.1 CDS hpcG NC_005296.1 4253885 4254691 D 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 4253885..4254691 Rhodopseudomonas palustris CGA009 2690733 NP_949096.1 CDS hpcD NC_005296.1 4254712 4255110 D 5-carboxymethyl-2-hydroxymuconate isomerase 4254712..4255110 Rhodopseudomonas palustris CGA009 2690623 NP_949097.1 CDS hpcC NC_005296.1 4255103 4256644 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase 4255103..4256644 Rhodopseudomonas palustris CGA009 2690601 NP_949098.1 CDS RPA3761 NC_005296.1 4256841 4257818 D catechol 2,3-dioxygenase 4256841..4257818 Rhodopseudomonas palustris CGA009 2690627 NP_949099.1 CDS RPA3762 NC_005296.1 4257949 4258821 D 2-oxo-3-ene-1,7-dioic acid hydratase 4257949..4258821 Rhodopseudomonas palustris CGA009 2690626 NP_949100.1 CDS ilvB NC_005296.1 4258850 4260475 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4258850..4260475 Rhodopseudomonas palustris CGA009 2690635 NP_949101.1 CDS RPA3764 NC_005296.1 4260666 4261754 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; phenylacetate-CoA oxygenase/reductase subunit PaaK complement(4260666..4261754) Rhodopseudomonas palustris CGA009 2689972 NP_949102.1 CDS paaD NC_005296.1 4261763 4262266 R phenylacetate-CoA oxygenase subunit PaaJ complement(4261763..4262266) Rhodopseudomonas palustris CGA009 2690638 NP_949103.1 CDS paaC NC_005296.1 4262260 4263036 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; phenylacetate-CoA oxygenase subunit PaaI complement(4262260..4263036) Rhodopseudomonas palustris CGA009 2692265 NP_949104.1 CDS paaB NC_005296.1 4263153 4263440 R with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB complement(4263153..4263440) Rhodopseudomonas palustris CGA009 2692261 NP_949105.1 CDS paaA NC_005296.1 4263613 4264596 R with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA complement(4263613..4264596) Rhodopseudomonas palustris CGA009 2692269 NP_949106.1 CDS RPA3769 NC_005296.1 4264719 4265399 D TetR family transcriptional regulator 4264719..4265399 Rhodopseudomonas palustris CGA009 2693020 NP_949107.1 CDS RPA3770 NC_005296.1 4265634 4266137 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; phasin 2 complement(4265634..4266137) Rhodopseudomonas palustris CGA009 2693041 NP_949108.1 CDS RPA3771 NC_005296.1 4266349 4266669 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4266349..4266669) Rhodopseudomonas palustris CGA009 2693038 NP_949109.1 CDS RPA3772 NC_005296.1 4266718 4267509 R hypothetical protein complement(4266718..4267509) Rhodopseudomonas palustris CGA009 2689915 NP_949110.1 CDS RPA3773 NC_005296.1 4267528 4267782 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4267528..4267782) Rhodopseudomonas palustris CGA009 2690525 NP_949111.1 CDS RPA3774 NC_005296.1 4267873 4269126 R D-amino-acid dehydrogenase complement(4267873..4269126) Rhodopseudomonas palustris CGA009 2690527 NP_949112.1 CDS RPA3775 NC_005296.1 4269405 4272509 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acriflavin resistance protein complement(4269405..4272509) Rhodopseudomonas palustris CGA009 2690529 NP_949113.1 CDS RPA3776 NC_005296.1 4272651 4273844 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; RND efflux membrane fusion protein complement(4272651..4273844) Rhodopseudomonas palustris CGA009 2689953 NP_949114.1 CDS RPA3777 NC_005296.1 4273846 4274547 R TetR family transcriptional regulator complement(4273846..4274547) Rhodopseudomonas palustris CGA009 2693033 NP_949115.1 CDS RPA3778 NC_005296.1 4274767 4275987 D cytochrome p450-like enzyme 4274767..4275987 Rhodopseudomonas palustris CGA009 2693057 NP_949116.1 CDS RPA3779 NC_005296.1 4276159 4277718 D hypothetical protein 4276159..4277718 Rhodopseudomonas palustris CGA009 2691908 NP_949117.1 CDS RPA3780 NC_005296.1 4277730 4278602 R hypothetical protein complement(4277730..4278602) Rhodopseudomonas palustris CGA009 2693050 NP_949118.1 CDS yihV NC_005296.1 4278937 4279830 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; PfkB protein 4278937..4279830 Rhodopseudomonas palustris CGA009 2693059 NP_949119.1 CDS RPA3782 NC_005296.1 4279934 4281151 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(4279934..4281151) Rhodopseudomonas palustris CGA009 2692277 NP_949120.1 CDS RPA3783 NC_005296.1 4281276 4282772 R glycosyl transferase family protein complement(4281276..4282772) Rhodopseudomonas palustris CGA009 2692279 NP_949121.1 CDS RPA3784 NC_005296.1 4282780 4283916 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; dolichyl-phosphate beta-D-mannosyltransferase complement(4282780..4283916) Rhodopseudomonas palustris CGA009 2692288 NP_949122.1 CDS RPA3785 NC_005296.1 4284169 4284975 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4284169..4284975 Rhodopseudomonas palustris CGA009 2693069 NP_949123.1 CDS RPA3786 NC_005296.1 4285121 4285378 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4285121..4285378 Rhodopseudomonas palustris CGA009 2693071 NP_949124.1 CDS RPA3787 NC_005296.1 4285476 4286378 D hypothetical protein 4285476..4286378 Rhodopseudomonas palustris CGA009 2693079 NP_949125.1 CDS RPA3788 NC_005296.1 4286411 4287583 R ABC transporter ATP-binding protein complement(4286411..4287583) Rhodopseudomonas palustris CGA009 2692296 NP_949126.1 CDS RPA3789 NC_005296.1 4287580 4288533 R ABC-transporter ATP-binding protein system complement(4287580..4288533) Rhodopseudomonas palustris CGA009 2690533 NP_949127.1 CDS RPA3790 NC_005296.1 4288530 4289333 R efflux protein complement(4288530..4289333) Rhodopseudomonas palustris CGA009 2691728 NP_949128.1 CDS RPA3791 NC_005296.1 4289330 4290046 R TetR family transcriptional regulator complement(4289330..4290046) Rhodopseudomonas palustris CGA009 2691733 NP_949129.1 CDS RPA3792 NC_005296.1 4290117 4291256 R diguanylate cyclase complement(4290117..4291256) Rhodopseudomonas palustris CGA009 2693077 NP_949130.1 CDS RPA3793 NC_005296.1 4291644 4292054 R hypothetical protein complement(4291644..4292054) Rhodopseudomonas palustris CGA009 2693089 NP_949131.1 CDS RPA3794 NC_005296.1 4292116 4292460 R hypothetical protein complement(4292116..4292460) Rhodopseudomonas palustris CGA009 2693091 NP_949132.1 CDS RPA3795 NC_005296.1 4292609 4293361 R enoyl-CoA hydratase complement(4292609..4293361) Rhodopseudomonas palustris CGA009 2693094 NP_949133.1 CDS RPA3796 NC_005296.1 4293461 4294291 D LysR family transcriptional regulator 4293461..4294291 Rhodopseudomonas palustris CGA009 2691738 NP_949134.1 CDS RPA3797 NC_005296.1 4294303 4295904 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase complement(4294303..4295904) Rhodopseudomonas palustris CGA009 2691744 NP_949135.1 CDS RPA3798 NC_005296.1 4295901 4296602 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; xanthine dehydrogenase accessory factor complement(4295901..4296602) Rhodopseudomonas palustris CGA009 2691739 NP_949136.1 CDS RPA3799 NC_005296.1 4296633 4296959 R hypothetical protein complement(4296633..4296959) Rhodopseudomonas palustris CGA009 2692294 NP_949137.1 CDS RPA3800 NC_005296.1 4296995 4298212 R von Willebrand factor A complement(4296995..4298212) Rhodopseudomonas palustris CGA009 2692307 NP_949138.1 CDS RPA3801 NC_005296.1 4298538 4299440 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ATPase complement(4298538..4299440) Rhodopseudomonas palustris CGA009 2692301 NP_949139.1 CDS RPA3802 NC_005296.1 4299460 4300266 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; carbon monoxide dehydrogenase medium subunit complement(4299460..4300266) Rhodopseudomonas palustris CGA009 2692310 NP_949140.1 CDS RPA3803 NC_005296.1 4300342 4300827 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; carbon-monoxide dehydrogenase small subunit complement(4300342..4300827) Rhodopseudomonas palustris CGA009 2691901 NP_949141.1 CDS RPA3804 NC_005296.1 4301003 4301467 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4301003..4301467) Rhodopseudomonas palustris CGA009 2691354 NP_949142.1 CDS RPA3805 NC_005296.1 4301663 4302190 R hypothetical protein complement(4301663..4302190) Rhodopseudomonas palustris CGA009 2691890 NP_949143.1 CDS livH NC_005296.1 4303024 4303941 D inner-membrane translocator 4303024..4303941 Rhodopseudomonas palustris CGA009 2689541 NP_949144.1 CDS livM NC_005296.1 4303954 4305285 D inner-membrane translocator 4303954..4305285 Rhodopseudomonas palustris CGA009 2689546 NP_949145.1 CDS livG NC_005296.1 4305282 4306118 D branched chain amino acid ABC transporter ATP-binding protein 4305282..4306118 Rhodopseudomonas palustris CGA009 2689545 NP_949146.1 CDS livF NC_005296.1 4306255 4306995 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched chain amino acid ABC transporter ATP-binding protein 4306255..4306995 Rhodopseudomonas palustris CGA009 2689559 NP_949147.1 CDS livK NC_005296.1 4307174 4308280 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; extracellular ligand-binding receptor 4307174..4308280 Rhodopseudomonas palustris CGA009 2689563 NP_949148.1 CDS RPA3811 NC_005296.1 4308492 4308779 R excinuclease ABC subunit C complement(4308492..4308779) Rhodopseudomonas palustris CGA009 2690728 NP_949149.1 CDS RPA3812 NC_005296.1 4309058 4309792 R cytochrome c biogenesis protein transmembrane region complement(4309058..4309792) Rhodopseudomonas palustris CGA009 2689896 NP_949150.1 CDS RPA3813 NC_005296.1 4309894 4310943 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; T4 family peptidase 4309894..4310943 Rhodopseudomonas palustris CGA009 2689716 NP_949151.1 CDS RPA3814 NC_005296.1 4311084 4311854 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; calcium-binding EF-hand complement(4311084..4311854) Rhodopseudomonas palustris CGA009 2689781 NP_949152.1 CDS cbbE NC_005296.1 4312124 4312822 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ribulose-phosphate 3-epimerase 4312124..4312822 Rhodopseudomonas palustris CGA009 2689922 NP_949153.1 CDS RPA3816 NC_005296.1 4312829 4313380 R hypothetical protein complement(4312829..4313380) Rhodopseudomonas palustris CGA009 2689918 NP_949154.1 CDS purB NC_005296.1 4313465 4314772 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 4313465..4314772 Rhodopseudomonas palustris CGA009 2690719 NP_949155.1 CDS purL NC_005296.1 4315019 4315720 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I complement(4315019..4315720) Rhodopseudomonas palustris CGA009 2689767 NP_949156.1 CDS RPA3819 NC_005296.1 4315777 4316016 R hypothetical protein complement(4315777..4316016) Rhodopseudomonas palustris CGA009 2689772 NP_949157.1 CDS RPA3820 NC_005296.1 4316040 4316285 R With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway; phosphoribosylformylglycinamidine synthase subunit PurS complement(4316040..4316285) Rhodopseudomonas palustris CGA009 2689990 NP_949158.1 CDS purC2 NC_005296.1 4316467 4317234 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(4316467..4317234) Rhodopseudomonas palustris CGA009 2690715 NP_949159.1 CDS RPA3822 NC_005296.1 4317533 4317856 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4317533..4317856 Rhodopseudomonas palustris CGA009 2690714 NP_949160.1 CDS RPA3823 NC_005296.1 4318428 4319102 D hypothetical protein 4318428..4319102 Rhodopseudomonas palustris CGA009 2689992 NP_949161.1 CDS RPA3824 NC_005296.1 4319994 4320344 R hypothetical protein complement(4319994..4320344) Rhodopseudomonas palustris CGA009 2689999 NP_949162.1 CDS RPA3825 NC_005296.1 4320433 4321281 R hypothetical protein complement(4320433..4321281) Rhodopseudomonas palustris CGA009 2690711 NP_949163.1 CDS RPA3826 NC_005296.1 4321678 4322034 D hypothetical protein 4321678..4322034 Rhodopseudomonas palustris CGA009 2689770 NP_949164.1 CDS RPA3827 NC_005296.1 4322038 4322361 D hypothetical protein 4322038..4322361 Rhodopseudomonas palustris CGA009 2690016 NP_949165.1 CDS RPA3828 NC_005296.1 4322486 4322683 D XRE family transcriptional regulator 4322486..4322683 Rhodopseudomonas palustris CGA009 2690709 NP_949166.1 CDS RPA3829 NC_005296.1 4323708 4324238 R activates RNA polymerase to cleave back-tracked RNA during elongational pausing; transcription elongation factor regulatory protein complement(4323708..4324238) Rhodopseudomonas palustris CGA009 2690023 NP_949167.1 CDS RPA3830 NC_005296.1 4324251 4324745 R G/U mismatch-specific DNA glycosylase complement(4324251..4324745) Rhodopseudomonas palustris CGA009 2690019 NP_949168.1 CDS RPA3831 NC_005296.1 4324785 4325186 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4324785..4325186) Rhodopseudomonas palustris CGA009 2690030 NP_949169.1 CDS RPA3832 NC_005296.1 4325281 4326351 R diguanylate cyclase complement(4325281..4326351) Rhodopseudomonas palustris CGA009 2690021 NP_949170.1 CDS rrm2 NC_005296.1 4326454 4327668 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; tRNA/rRNA methyltransferase complement(4326454..4327668) Rhodopseudomonas palustris CGA009 2690033 NP_949171.1 CDS idh NC_005296.1 4328043 4329269 D Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 4328043..4329269 Rhodopseudomonas palustris CGA009 2690037 NP_949172.1 CDS RPA3835 NC_005296.1 4329349 4330659 R hypothetical protein complement(4329349..4330659) Rhodopseudomonas palustris CGA009 2690044 NP_949173.1 CDS RPA3836 NC_005296.1 4331612 4332532 R integrase catalytic subunit complement(4331612..4332532) Rhodopseudomonas palustris CGA009 2689372 NP_949174.1 CDS RPA3837 NC_005296.1 4332529 4332795 R insertion element ISR1 complement(4332529..4332795) Rhodopseudomonas palustris CGA009 2689371 NP_949175.1 CDS RPA3838 NC_005296.1 4333101 4333433 D hypothetical protein 4333101..4333433 Rhodopseudomonas palustris CGA009 2689374 NP_949176.1 CDS pchR NC_005296.1 4333604 4334443 D transcriptional regulator PchR 4333604..4334443 Rhodopseudomonas palustris CGA009 2689365 NP_949177.1 CDS RPA3840 NC_005296.1 4334584 4336893 D hydroxamate-type ferrisiderophore receptor 4334584..4336893 Rhodopseudomonas palustris CGA009 2689376 NP_949178.1 CDS RPA3841 NC_005296.1 4336914 4337444 D hypothetical protein 4336914..4337444 Rhodopseudomonas palustris CGA009 2692586 NP_949179.1 CDS RPA3842 NC_005296.1 4337441 4338550 D hypothetical protein 4337441..4338550 Rhodopseudomonas palustris CGA009 2692574 NP_949180.1 CDS kefC NC_005296.1 4338580 4340313 R potassium efflux system protein complement(4338580..4340313) Rhodopseudomonas palustris CGA009 2689960 NP_949181.1 CDS kefB NC_005296.1 4340497 4342275 D sodium/hydrogen exchanger 4340497..4342275 Rhodopseudomonas palustris CGA009 2689754 NP_949182.1 CDS RPA3845 NC_005296.1 4342505 4344463 D membrane transporter 4342505..4344463 Rhodopseudomonas palustris CGA009 2692570 NP_949183.1 CDS RPA3846 NC_005296.1 4344559 4345320 R N-acetyltransferase GCN5 complement(4344559..4345320) Rhodopseudomonas palustris CGA009 2691749 NP_949184.1 CDS alaS NC_005296.1 4345322 4347991 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(4345322..4347991) Rhodopseudomonas palustris CGA009 2691966 NP_949185.1 CDS gcvT NC_005296.1 4348444 4349592 D catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 4348444..4349592 Rhodopseudomonas palustris CGA009 2691973 NP_949186.1 CDS RPA3849 NC_005296.1 4349602 4349967 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 4349602..4349967 Rhodopseudomonas palustris CGA009 2691976 NP_949187.1 CDS gcvP NC_005296.1 4350069 4353041 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 4350069..4353041 Rhodopseudomonas palustris CGA009 2691977 NP_949188.1 CDS recA NC_005296.1 4353490 4354581 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(4353490..4354581) Rhodopseudomonas palustris CGA009 2691987 NP_949189.1 CDS RPA3852 NC_005296.1 4354998 4355564 R hypothetical protein complement(4354998..4355564) Rhodopseudomonas palustris CGA009 2691124 NP_949190.1 CDS RPA3853 NC_005296.1 4355837 4356952 D hypothetical protein 4355837..4356952 Rhodopseudomonas palustris CGA009 2691991 NP_949191.1 CDS RPA3854 NC_005296.1 4357103 4357480 D hypothetical protein 4357103..4357480 Rhodopseudomonas palustris CGA009 2692001 NP_949192.1 CDS RPA3855 NC_005296.1 4357821 4358735 D hypothetical protein 4357821..4358735 Rhodopseudomonas palustris CGA009 2692568 NP_949193.1 CDS RPA3856 NC_005296.1 4358739 4359098 D hypothetical protein 4358739..4359098 Rhodopseudomonas palustris CGA009 2691998 NP_949194.1 CDS RPA3857 NC_005296.1 4359262 4361286 R esterase complement(4359262..4361286) Rhodopseudomonas palustris CGA009 2692567 NP_949195.1 CDS RPA3858 NC_005296.1 4361678 4361935 D hypothetical protein 4361678..4361935 Rhodopseudomonas palustris CGA009 2692012 NP_949196.1 CDS RPA3859 NC_005296.1 4361953 4362348 R hypothetical protein complement(4361953..4362348) Rhodopseudomonas palustris CGA009 2692004 NP_949197.1 CDS RPA3860 NC_005296.1 4362408 4362581 D hypothetical protein 4362408..4362581 Rhodopseudomonas palustris CGA009 2692034 NP_949198.1 CDS RPA3861 NC_005296.1 4362966 4363352 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4362966..4363352 Rhodopseudomonas palustris CGA009 2692561 NP_949199.1 CDS RPA3862 NC_005296.1 4363538 4363834 R hypothetical protein complement(4363538..4363834) Rhodopseudomonas palustris CGA009 2692050 NP_949200.1 CDS RPA3863 NC_005296.1 4363862 4364614 R Crp/Fnr family transcriptional regulator complement(4363862..4364614) Rhodopseudomonas palustris CGA009 2692040 NP_949201.1 CDS RPA3864 NC_005296.1 4364688 4364954 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4364688..4364954) Rhodopseudomonas palustris CGA009 2692041 NP_949202.1 CDS RPA3865 NC_005296.1 4365165 4365713 D thioesterase 4365165..4365713 Rhodopseudomonas palustris CGA009 2692065 NP_949203.1 CDS RPA3866 NC_005296.1 4365768 4367363 R hypothetical protein complement(4365768..4367363) Rhodopseudomonas palustris CGA009 2692529 NP_949204.1 CDS RPA3867 NC_005296.1 4367449 4368609 D hypothetical protein 4367449..4368609 Rhodopseudomonas palustris CGA009 2692075 NP_949205.1 CDS RPA3868 NC_005296.1 4368610 4369275 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; DSBA oxidoreductase complement(4368610..4369275) Rhodopseudomonas palustris CGA009 2692043 NP_949206.1 CDS RPA3869 NC_005296.1 4369348 4370169 R XRE family transcriptional regulator complement(4369348..4370169) Rhodopseudomonas palustris CGA009 2692076 NP_949207.1 CDS RPA3870 NC_005296.1 4370305 4370718 D hypothetical protein 4370305..4370718 Rhodopseudomonas palustris CGA009 2692083 NP_949208.1 CDS mes-4 NC_005296.1 4370841 4371578 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; nuclear protein SET complement(4370841..4371578) Rhodopseudomonas palustris CGA009 2692091 NP_949209.1 CDS RPA3872 NC_005296.1 4371720 4372349 D hypothetical protein 4371720..4372349 Rhodopseudomonas palustris CGA009 2692097 NP_949210.1 CDS RPA3873 NC_005296.1 4372500 4373093 D hypothetical protein 4372500..4373093 Rhodopseudomonas palustris CGA009 2692089 NP_949211.1 CDS RPA3874 NC_005296.1 4373101 4373811 R hypothetical protein complement(4373101..4373811) Rhodopseudomonas palustris CGA009 2692098 NP_949212.1 CDS RPA3875 NC_005296.1 4374071 4374367 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4374071..4374367 Rhodopseudomonas palustris CGA009 2692107 NP_949213.1 CDS fumA NC_005296.1 4374559 4376214 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; fumarate hydratase class I complement(4374559..4376214) Rhodopseudomonas palustris CGA009 2692109 NP_949214.1 CDS RPA3877 NC_005296.1 4377765 4378049 R hypothetical protein complement(4377765..4378049) Rhodopseudomonas palustris CGA009 2692112 NP_949215.1 CDS RPA3878 NC_005296.1 4378147 4378641 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4378147..4378641 Rhodopseudomonas palustris CGA009 2692121 NP_949216.1 CDS RPA3879 NC_005296.1 4379170 4379529 D hypothetical protein 4379170..4379529 Rhodopseudomonas palustris CGA009 2692118 NP_949217.1 CDS RPA3880 NC_005296.1 4379688 4380398 R glutathione S-transferase complement(4379688..4380398) Rhodopseudomonas palustris CGA009 2690582 NP_949218.1 CDS RPA3881 NC_005296.1 4380519 4381532 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; import inner membrane translocase subunit Tim44 complement(4380519..4381532) Rhodopseudomonas palustris CGA009 2692137 NP_949219.1 CDS cckA NC_005296.1 4381871 4384519 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; sensor histidine kinase complement(4381871..4384519) Rhodopseudomonas palustris CGA009 2692138 NP_949220.1 CDS flhB NC_005296.1 4384623 4385696 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(4384623..4385696) Rhodopseudomonas palustris CGA009 2691847 NP_949221.1 CDS fliR NC_005296.1 4385723 4386490 R FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR complement(4385723..4386490) Rhodopseudomonas palustris CGA009 2691850 NP_949222.1 CDS fliQ NC_005296.1 4386597 4386860 R FliQ, with proteins FliP and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellar biosynthesis protein FliQ complement(4386597..4386860) Rhodopseudomonas palustris CGA009 2690846 NP_949223.1 CDS fliE NC_005296.1 4387018 4387323 R forms a junction between the M-ring and FlgB during flagella biosynthesis; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagella; flagellar hook-basal body protein FliE complement(4387018..4387323) Rhodopseudomonas palustris CGA009 2690847 NP_949224.1 CDS flgC NC_005296.1 4387359 4387784 R with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC complement(4387359..4387784) Rhodopseudomonas palustris CGA009 2690854 NP_949225.1 CDS flgB NC_005296.1 4387806 4388312 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellar basal-body rod protein FlgB complement(4387806..4388312) Rhodopseudomonas palustris CGA009 2691750 NP_949226.1 CDS RPA3889 NC_005296.1 4388533 4389687 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4388533..4389687 Rhodopseudomonas palustris CGA009 2691051 NP_949227.1 CDS fliP NC_005296.1 4389684 4390448 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 4389684..4390448 Rhodopseudomonas palustris CGA009 2692779 NP_949228.1 CDS RPA3891 NC_005296.1 4390618 4394346 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4390618..4394346) Rhodopseudomonas palustris CGA009 2691054 NP_949229.1 CDS RPA3892 NC_005296.1 4394823 4395152 D hypothetical protein 4394823..4395152 Rhodopseudomonas palustris CGA009 2690619 NP_949230.1 CDS RPA3893 NC_005296.1 4395182 4396705 R carboxylesterase complement(4395182..4396705) Rhodopseudomonas palustris CGA009 2691149 NP_949231.1 CDS RPA3894 NC_005296.1 4396731 4397354 R TetR family transcriptional regulator complement(4396731..4397354) Rhodopseudomonas palustris CGA009 2690604 NP_949232.1 CDS RPA3895 NC_005296.1 4397532 4398296 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4397532..4398296) Rhodopseudomonas palustris CGA009 2691756 NP_949233.1 CDS RPA3896 NC_005296.1 4398293 4398721 R hypothetical protein complement(4398293..4398721) Rhodopseudomonas palustris CGA009 2690591 NP_949234.1 CDS fliM NC_005296.1 4398718 4399920 R with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellar motor switch protein FliM complement(4398718..4399920) Rhodopseudomonas palustris CGA009 2692767 NP_949235.1 CDS fliL NC_005296.1 4399927 4400427 R interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body protein FliL complement(4399927..4400427) Rhodopseudomonas palustris CGA009 2692762 NP_949236.1 CDS flgF NC_005296.1 4400792 4401553 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum; flagellar basal body rod protein FlgF 4400792..4401553 Rhodopseudomonas palustris CGA009 2691760 NP_949237.1 CDS flgG NC_005296.1 4401566 4402354 D makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella; flagellar basal body rod protein FlgG 4401566..4402354 Rhodopseudomonas palustris CGA009 2691753 NP_949238.1 CDS flgA NC_005296.1 4402367 4403395 D required for the assembly of the flagellar basal body P-ring; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum; flagellar basal body P-ring biosynthesis protein FlgA 4402367..4403395 Rhodopseudomonas palustris CGA009 2691018 NP_949239.1 CDS flgH NC_005296.1 4403401 4404159 D part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 4403401..4404159 Rhodopseudomonas palustris CGA009 2690758 NP_949240.1 CDS mexD3 NC_005296.1 4404420 4407572 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; RND multidrug efflux transporter MexD complement(4404420..4407572) Rhodopseudomonas palustris CGA009 2691202 NP_949241.1 CDS mexC3 NC_005296.1 4407585 4408778 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; RND multidrug efflux membrane fusion protein MexC complement(4407585..4408778) Rhodopseudomonas palustris CGA009 2692738 NP_949242.1 CDS RPA3905 NC_005296.1 4408925 4409488 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; TetR family transcriptional regulator 4408925..4409488 Rhodopseudomonas palustris CGA009 2691204 NP_949243.1 CDS RPA3906 NC_005296.1 4409685 4409966 D hypothetical protein 4409685..4409966 Rhodopseudomonas palustris CGA009 2691684 NP_949244.1 CDS dksA NC_005296.1 4410076 4410504 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; transcriptional regulators TraR/DksA family complement(4410076..4410504) Rhodopseudomonas palustris CGA009 2693006 NP_949245.1 CDS fliX NC_005296.1 4410625 4411035 R regulator of the sigma 54 transcriptional activator FlbD; represses FlbD when the class II flagellar structure is absent and activates FlbD when the structure is present; flagellar assembly regulator FliX complement(4410625..4411035) Rhodopseudomonas palustris CGA009 2693008 NP_949246.1 CDS flgI NC_005296.1 4411334 4412455 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring biosynthesis protein FlgA 4411334..4412455 Rhodopseudomonas palustris CGA009 2691825 NP_949247.1 CDS RPA3910 NC_005296.1 4412452 4412790 D chemotactic signal-response protein CheL 4412452..4412790 Rhodopseudomonas palustris CGA009 2691214 NP_949248.1 CDS RPA3911 NC_005296.1 4412808 4413299 D hypothetical protein 4412808..4413299 Rhodopseudomonas palustris CGA009 2692717 NP_949249.1 CDS RPA3912 NC_005296.1 4413479 4413850 D hypothetical protein 4413479..4413850 Rhodopseudomonas palustris CGA009 2692721 NP_949250.1 CDS flaF NC_005296.1 4413967 4414335 R acts as an activator of flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum; flagellar biosynthesis regulatory protein FlaF complement(4413967..4414335) Rhodopseudomonas palustris CGA009 2692695 NP_949251.1 CDS flbT NC_005296.1 4414339 4414719 R post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA; Bradyrhizobium has one thick and several thin flagella, the Bradyrhizobium protein in this cluster is associated with the thin flagella; flagellar biosynthesis repressor FlbT complement(4414339..4414719) Rhodopseudomonas palustris CGA009 2691227 NP_949252.1 CDS RPA3915 NC_005296.1 4414935 4417595 R structural flagella protein; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellin complement(4414935..4417595) Rhodopseudomonas palustris CGA009 2691221 NP_949253.1 CDS RPA3916 NC_005296.1 4418117 4420264 D hypothetical protein 4418117..4420264 Rhodopseudomonas palustris CGA009 2692697 NP_949254.1 CDS RPA3917 NC_005296.1 4420277 4422079 R acetolactate synthase large subunit complement(4420277..4422079) Rhodopseudomonas palustris CGA009 2691225 NP_949255.1 CDS RPA3918 NC_005296.1 4422103 4422909 R hypothetical protein complement(4422103..4422909) Rhodopseudomonas palustris CGA009 2690899 NP_949256.1 CDS RPA3919 NC_005296.1 4422906 4423826 R mannose-1-phosphate guanylyltransferase complement(4422906..4423826) Rhodopseudomonas palustris CGA009 2691015 NP_949257.1 CDS RPA3920 NC_005296.1 4423823 4425307 R ADP-heptose synthase complement(4423823..4425307) Rhodopseudomonas palustris CGA009 2691021 NP_949258.1 CDS RPA3921 NC_005296.1 4425313 4426368 R acetoin dehydrogenase (TPP-dependent) subunit beta complement(4425313..4426368) Rhodopseudomonas palustris CGA009 2691947 NP_949259.1 CDS RPA3922 NC_005296.1 4426519 4427571 R acetoin dehydrogenase (TPP-dependent) subunit beta complement(4426519..4427571) Rhodopseudomonas palustris CGA009 2690957 NP_949260.1 CDS RPA3923 NC_005296.1 4427582 4428559 R acetoin dehydrogenase (TPP-dependent) subunit alpha complement(4427582..4428559) Rhodopseudomonas palustris CGA009 2691233 NP_949261.1 CDS RPA3924 NC_005296.1 4428556 4429215 R hypothetical protein complement(4428556..4429215) Rhodopseudomonas palustris CGA009 2691239 NP_949262.1 CDS RPA3925 NC_005296.1 4429224 4430261 R dTDP-glucose 4,6-dehydratase complement(4429224..4430261) Rhodopseudomonas palustris CGA009 2690967 NP_949263.1 CDS RPA3926 NC_005296.1 4430258 4431196 R sugar-nucleotide epimerase/dehydratase complement(4430258..4431196) Rhodopseudomonas palustris CGA009 2691235 NP_949264.1 CDS RPA3927 NC_005296.1 4431338 4432006 R phosphoheptose isomerase complement(4431338..4432006) Rhodopseudomonas palustris CGA009 2690928 NP_949265.1 CDS RPA3928 NC_005296.1 4432129 4433091 R hypothetical protein complement(4432129..4433091) Rhodopseudomonas palustris CGA009 2689911 NP_949266.1 CDS RPA3929 NC_005296.1 4433205 4435871 R structural flagella protein; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellin complement(4433205..4435871) Rhodopseudomonas palustris CGA009 2691042 NP_949267.1 CDS RPA3930 NC_005296.1 4436179 4437786 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4436179..4437786) Rhodopseudomonas palustris CGA009 2691242 NP_949268.1 CDS flgK2 NC_005296.1 4437795 4439666 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; flagellar hook-associated protein complement(4437795..4439666) Rhodopseudomonas palustris CGA009 2689962 NP_949269.1 CDS RPA3932 NC_005296.1 4439705 4441501 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; flagellar hook protein flgE complement(4439705..4441501) Rhodopseudomonas palustris CGA009 2691248 NP_949270.1 CDS RPA3933 NC_005296.1 4441771 4444836 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; sensor histidine kinase 4441771..4444836 Rhodopseudomonas palustris CGA009 2690051 NP_949271.1 CDS RPA3934 NC_005296.1 4444803 4446011 D sensor histidine kinase/response regulator 4444803..4446011 Rhodopseudomonas palustris CGA009 2690055 NP_949272.1 CDS RPA3935 NC_005296.1 4446201 4446473 D hypothetical protein 4446201..4446473 Rhodopseudomonas palustris CGA009 2690069 NP_949273.1 CDS RPA3936 NC_005296.1 4446510 4448003 R hypothetical protein complement(4446510..4448003) Rhodopseudomonas palustris CGA009 2690074 NP_949274.1 CDS RPA3937 NC_005296.1 4448155 4448652 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(4448155..4448652) Rhodopseudomonas palustris CGA009 2692318 NP_949275.1 CDS RPA3938 NC_005296.1 4448786 4450246 R FAD dependent oxidoreductase complement(4448786..4450246) Rhodopseudomonas palustris CGA009 2692311 NP_949276.1 CDS RPA3939 NC_005296.1 4450387 4450917 D phosphohistidine phosphatase SixA 4450387..4450917 Rhodopseudomonas palustris CGA009 2691070 NP_949277.1 CDS RPA3940 NC_005296.1 4450961 4451392 D hypothetical protein 4450961..4451392 Rhodopseudomonas palustris CGA009 2692325 NP_949278.1 CDS RPA3941 NC_005296.1 4451414 4452010 R hypothetical protein complement(4451414..4452010) Rhodopseudomonas palustris CGA009 2692312 NP_949279.1 CDS RPA3942 NC_005296.1 4452159 4452599 D hypothetical protein 4452159..4452599 Rhodopseudomonas palustris CGA009 2692320 NP_949280.1 CDS RPA3943 NC_005296.1 4452700 4453206 R hypothetical protein complement(4452700..4453206) Rhodopseudomonas palustris CGA009 2692330 NP_949281.1 CDS RPA3944 NC_005296.1 4453613 4454704 D hypothetical protein 4453613..4454704 Rhodopseudomonas palustris CGA009 2691088 NP_949282.1 CDS RPA3945 NC_005296.1 4454765 4456852 D hypothetical protein 4454765..4456852 Rhodopseudomonas palustris CGA009 2691086 NP_949283.1 CDS RPA3946 NC_005296.1 4456952 4458091 R hypothetical protein complement(4456952..4458091) Rhodopseudomonas palustris CGA009 2691090 NP_949284.1 CDS RPA3947 NC_005296.1 4458271 4458933 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4458271..4458933) Rhodopseudomonas palustris CGA009 2691099 NP_949285.1 CDS RPA3948 NC_005296.1 4459023 4460288 R hypothetical protein complement(4459023..4460288) Rhodopseudomonas palustris CGA009 2691101 NP_949286.1 CDS wbpX NC_005296.1 4460299 4461624 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glycosyltransferase WbpX complement(4460299..4461624) Rhodopseudomonas palustris CGA009 2691696 NP_949287.1 CDS RPA3950 NC_005296.1 4461777 4462838 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glycosyl transferase family protein 4461777..4462838 Rhodopseudomonas palustris CGA009 2689984 NP_949288.1 CDS gmd NC_005296.1 4462907 4463893 D GDP-mannose 4,6-dehydratase 4462907..4463893 Rhodopseudomonas palustris CGA009 2690971 NP_949289.1 CDS RPA3952 NC_005296.1 4463893 4464876 D oxidoreductase Rmd 4463893..4464876 Rhodopseudomonas palustris CGA009 2690965 NP_949290.1 CDS RPA3953 NC_005296.1 4464910 4466172 R chloride channel protein complement(4464910..4466172) Rhodopseudomonas palustris CGA009 2689847 NP_949291.1 CDS RPA3954 NC_005296.1 4466340 4467368 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; thioredoxin reductase complement(4466340..4467368) Rhodopseudomonas palustris CGA009 2690535 NP_949292.1 CDS RPA3955 NC_005296.1 4467683 4467985 D hypothetical protein 4467683..4467985 Rhodopseudomonas palustris CGA009 2689932 NP_949293.1 CDS RPA3956 NC_005296.1 4468165 4468485 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ferredoxin complement(4468165..4468485) Rhodopseudomonas palustris CGA009 2689967 NP_949294.1 CDS RPA3957 NC_005296.1 4468582 4468941 R Hpt domain-containing protein complement(4468582..4468941) Rhodopseudomonas palustris CGA009 2689955 NP_949295.1 CDS RPA3958 NC_005296.1 4469382 4475459 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4469382..4475459 Rhodopseudomonas palustris CGA009 2689394 NP_949296.1 CDS RPA3959 NC_005296.1 4475883 4477367 D amidase 4475883..4477367 Rhodopseudomonas palustris CGA009 2689362 NP_949297.1 CDS RPA3960 NC_005296.1 4477612 4478415 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4477612..4478415 Rhodopseudomonas palustris CGA009 2689393 NP_949298.1 CDS RPA3961 NC_005296.1 4478600 4479493 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4478600..4479493) Rhodopseudomonas palustris CGA009 2690089 NP_949299.1 CDS RPA3962 NC_005296.1 4479631 4480404 R ABC transporter ATP-binding protein complement(4479631..4480404) Rhodopseudomonas palustris CGA009 2690087 NP_949300.1 CDS RPA3963 NC_005296.1 4480407 4481558 R hypothetical protein complement(4480407..4481558) Rhodopseudomonas palustris CGA009 2690092 NP_949301.1 CDS RPA3964 NC_005296.1 4481663 4482658 D muconate cycloisomerase 4481663..4482658 Rhodopseudomonas palustris CGA009 2690547 NP_949302.1 CDS RPA3965 NC_005296.1 4482628 4483836 R major facilitator transporter complement(4482628..4483836) Rhodopseudomonas palustris CGA009 2690545 NP_949303.1 CDS RPA3966 NC_005296.1 4483913 4485370 D hypothetical protein 4483913..4485370 Rhodopseudomonas palustris CGA009 2690101 NP_949304.1 CDS RPA3967 NC_005296.1 4485400 4486395 R pyridoxal-5'-phosphate-dependent enzyme subunit beta complement(4485400..4486395) Rhodopseudomonas palustris CGA009 2690103 NP_949305.1 CDS RPA3968 NC_005296.1 4486445 4487500 R group 1 glycosyl transferase complement(4486445..4487500) Rhodopseudomonas palustris CGA009 2689923 NP_949306.1 CDS RPA3969 NC_005296.1 4487500 4488297 R metallophosphoesterase complement(4487500..4488297) Rhodopseudomonas palustris CGA009 2690561 NP_949307.1 CDS RPA3970 NC_005296.1 4488351 4489007 R phosphatidylethanolamine N-methyltransferase complement(4488351..4489007) Rhodopseudomonas palustris CGA009 2690105 NP_949308.1 CDS thiD NC_005296.1 4489100 4489900 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; phosphomethylpyrimidine kinase complement(4489100..4489900) Rhodopseudomonas palustris CGA009 2690111 NP_949309.1 CDS RPA3972 NC_005296.1 4490291 4491220 R diheme cytochrome c-553 complement(4490291..4491220) Rhodopseudomonas palustris CGA009 2690114 NP_949310.1 CDS RPA3973 NC_005296.1 4491254 4491703 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; class II cytochrome c complement(4491254..4491703) Rhodopseudomonas palustris CGA009 2692341 NP_949311.1 CDS RPA3974 NC_005296.1 4491815 4494136 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; carbon-monoxide dehydrogenase complement(4491815..4494136) Rhodopseudomonas palustris CGA009 2690882 NP_949312.1 CDS RPA3975 NC_005296.1 4494382 4494675 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4494382..4494675) Rhodopseudomonas palustris CGA009 2690126 NP_949313.1 CDS RPA3976 NC_005296.1 4495106 4496911 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; carbamoyltransferase 4495106..4496911 Rhodopseudomonas palustris CGA009 2690145 NP_949314.1 CDS RPA3977 NC_005296.1 4496912 4498441 R integral membrane protein MviN complement(4496912..4498441) Rhodopseudomonas palustris CGA009 2691852 NP_949315.1 CDS wpbE NC_005296.1 4498568 4499719 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; DegT/DnrJ/EryC1/StrS aminotransferase complement(4498568..4499719) Rhodopseudomonas palustris CGA009 2690149 NP_949316.1 CDS RPA3979 NC_005296.1 4499777 4500772 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; NADH-dependent dehydrogenase complement(4499777..4500772) Rhodopseudomonas palustris CGA009 2690146 NP_949317.1 CDS wbnF NC_005296.1 4500913 4501959 R nucleotide sugar epimerase complement(4500913..4501959) Rhodopseudomonas palustris CGA009 2690157 NP_949318.1 CDS RPA3981 NC_005296.1 4502087 4503046 D hypothetical protein 4502087..4503046 Rhodopseudomonas palustris CGA009 2689138 NP_949319.1 CDS RPA3982 NC_005296.1 4503101 4504111 D glycosyl transferase family protein 4503101..4504111 Rhodopseudomonas palustris CGA009 2690166 NP_949320.1 CDS RPA3983 NC_005296.1 4504132 4506153 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; polysaccharide biosynthesis protein CapD complement(4504132..4506153) Rhodopseudomonas palustris CGA009 2690171 NP_949321.1 CDS rfaE NC_005296.1 4506092 4507564 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ADP-heptose synthase complement(4506092..4507564) Rhodopseudomonas palustris CGA009 2692340 NP_949322.1 CDS RPA3985 NC_005296.1 4507589 4508569 R ADP-L-glycero-D-manno-heptose-6-epimerase complement(4507589..4508569) Rhodopseudomonas palustris CGA009 2690168 NP_949323.1 CDS RPA3986 NC_005296.1 4508639 4509829 D lipopolysaccharide heptosyltransferase II 4508639..4509829 Rhodopseudomonas palustris CGA009 2690173 NP_949324.1 CDS lpcA NC_005296.1 4509900 4510487 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 4509900..4510487 Rhodopseudomonas palustris CGA009 2690193 NP_949325.1 CDS RPA3988 NC_005296.1 4510484 4511026 D phosphatase 4510484..4511026 Rhodopseudomonas palustris CGA009 2692359 NP_949326.1 CDS RPA3989 NC_005296.1 4511023 4511967 R lipopolysaccharide heptosyltransferase I complement(4511023..4511967) Rhodopseudomonas palustris CGA009 2692356 NP_949327.1 CDS galE1 NC_005296.1 4512150 4513163 D UDP-glucose 4-epimerase 4512150..4513163 Rhodopseudomonas palustris CGA009 2690195 NP_949328.1 CDS RPA3991 NC_005296.1 4513285 4515087 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter ATP-binding protein 4513285..4515087 Rhodopseudomonas palustris CGA009 2692533 NP_949329.1 CDS RPA3992 NC_005296.1 4515148 4515849 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; fumarylacetoacetate (FAA) hydrolase 4515148..4515849 Rhodopseudomonas palustris CGA009 2692363 NP_949330.1 CDS RPA3993 NC_005296.1 4516059 4516916 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4516059..4516916) Rhodopseudomonas palustris CGA009 2689907 NP_949331.1 CDS RPA3994 NC_005296.1 4517032 4518180 R diguanylate cyclase complement(4517032..4518180) Rhodopseudomonas palustris CGA009 2692366 NP_949332.1 CDS RPA3995 NC_005296.1 4518385 4518843 D hypothetical protein 4518385..4518843 Rhodopseudomonas palustris CGA009 2690213 NP_949333.1 CDS RPA3996 NC_005296.1 4518883 4519596 R Crp/Fnr family transcriptional regulator complement(4518883..4519596) Rhodopseudomonas palustris CGA009 2689881 NP_949334.1 CDS RPA3997 NC_005296.1 4519740 4520276 R hypothetical protein complement(4519740..4520276) Rhodopseudomonas palustris CGA009 2691290 NP_949335.1 CDS RPA3998 NC_005296.1 4520279 4520512 R hypothetical protein complement(4520279..4520512) Rhodopseudomonas palustris CGA009 2688799 NP_949336.1 CDS RPA3999 NC_005296.1 4520517 4521560 R coenzyme PQQ synthesis protein E complement(4520517..4521560) Rhodopseudomonas palustris CGA009 2690225 NP_949337.1 CDS RPA4000 NC_005296.1 4521683 4525000 D guanylate cyclase 4521683..4525000 Rhodopseudomonas palustris CGA009 2690219 NP_949338.1 CDS RPA4001 NC_005296.1 4525204 4527288 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; DEAD-box protein ATP-independent RNA helicase 4525204..4527288 Rhodopseudomonas palustris CGA009 2690235 NP_949339.1 CDS RPA4002 NC_005296.1 4527500 4528882 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl-CoA dehydrogenase complement(4527500..4528882) Rhodopseudomonas palustris CGA009 2692370 NP_949340.1 CDS RPA4003 NC_005296.1 4529421 4529558 D hypothetical protein 4529421..4529558 Rhodopseudomonas palustris CGA009 2692373 NP_949341.1 CDS RPA4004 NC_005296.1 4530050 4530211 D hypothetical protein 4530050..4530211 Rhodopseudomonas palustris CGA009 2690232 NP_949342.1 CDS RPA4006 NC_005296.1 4530839 4531315 D hypothetical protein 4530839..4531315 Rhodopseudomonas palustris CGA009 2690246 NP_949343.1 CDS RPA4007 NC_005296.1 4531480 4531812 D hypothetical protein 4531480..4531812 Rhodopseudomonas palustris CGA009 2690978 NP_949344.1 CDS RPA4008 NC_005296.1 4532011 4532274 D hypothetical protein 4532011..4532274 Rhodopseudomonas palustris CGA009 2692515 NP_949345.1 CDS RPA4009 NC_005296.1 4532346 4534394 D signal transduction histidine kinase 4532346..4534394 Rhodopseudomonas palustris CGA009 2690247 NP_949346.1 CDS RPA4010 NC_005296.1 4534391 4534768 D chemotaxis protein CheY 4534391..4534768 Rhodopseudomonas palustris CGA009 2690252 NP_949347.1 CDS RPA4011 NC_005296.1 4535113 4537245 D serine protease/outer membrane autotransporter 4535113..4537245 Rhodopseudomonas palustris CGA009 2690256 NP_949348.1 CDS RPA4012 NC_005296.1 4537981 4538667 D hypothetical protein 4537981..4538667 Rhodopseudomonas palustris CGA009 2691807 NP_949349.1 CDS RPA4013 NC_005296.1 4538856 4540454 R ABC transporter ATP-binding protein complement(4538856..4540454) Rhodopseudomonas palustris CGA009 2690980 NP_949350.1 CDS RPA4014 NC_005296.1 4540989 4543007 D hypothetical protein 4540989..4543007 Rhodopseudomonas palustris CGA009 2690257 NP_949351.1 CDS ahcY NC_005296.1 4543091 4544500 R catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase complement(4543091..4544500) Rhodopseudomonas palustris CGA009 2690275 NP_949352.1 CDS metK NC_005296.1 4544761 4545957 R methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(4544761..4545957) Rhodopseudomonas palustris CGA009 2690993 NP_949353.1 CDS RPA4017 NC_005296.1 4546021 4547427 R hypothetical protein complement(4546021..4547427) Rhodopseudomonas palustris CGA009 2690990 NP_949354.1 CDS RPA4018 NC_005296.1 4547580 4548890 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; UDP-glucose 6-dehydrogenase 4547580..4548890 Rhodopseudomonas palustris CGA009 2692636 NP_949355.1 CDS RPA4019 NC_005296.1 4549160 4550341 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched-chain amino acid ABC transporter system substrate-binding protein 4549160..4550341 Rhodopseudomonas palustris CGA009 2690289 NP_949356.1 CDS RPA4020 NC_005296.1 4550491 4551363 D branched chain amino acid ABC transporter permease 4550491..4551363 Rhodopseudomonas palustris CGA009 2691776 NP_949357.1 CDS RPA4021 NC_005296.1 4551364 4552311 D branched-chain amino acid ABC transport system permease LivM 4551364..4552311 Rhodopseudomonas palustris CGA009 2690291 NP_949358.1 CDS RPA4022 NC_005296.1 4552308 4553090 D branched-chain amino acid ABC transporter ATP-binding protein 4552308..4553090 Rhodopseudomonas palustris CGA009 2690831 NP_949359.1 CDS RPA4023 NC_005296.1 4553083 4553787 D branched-chain amino acid ABC transporter ATP-binding protein 4553083..4553787 Rhodopseudomonas palustris CGA009 2690832 NP_949360.1 CDS RPA4024 NC_005296.1 4554023 4555144 R catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(4554023..4555144) Rhodopseudomonas palustris CGA009 2690297 NP_949361.1 CDS RPA4025 NC_005296.1 4555160 4555876 R branched-chain amino acid ABC transporter ATP-binding protein complement(4555160..4555876) Rhodopseudomonas palustris CGA009 2690300 NP_949362.1 CDS RPA4026 NC_005296.1 4555897 4556514 R ABC transporter ATP-binding protein complement(4555897..4556514) Rhodopseudomonas palustris CGA009 2690318 NP_949363.1 CDS RPA4027 NC_005296.1 4556646 4557671 R branched chain amino acid ABC transporter permease complement(4556646..4557671) Rhodopseudomonas palustris CGA009 2691870 NP_949364.1 CDS RPA4028 NC_005296.1 4557671 4558537 R ABC transporter permease complement(4557671..4558537) Rhodopseudomonas palustris CGA009 2690316 NP_949365.1 CDS RPA4029 NC_005296.1 4558688 4559866 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched chain amino-acid ABC transporter substrate-binding protein complement(4558688..4559866) Rhodopseudomonas palustris CGA009 2692620 NP_949366.1 CDS RPA4030 NC_005296.1 4560104 4560502 D hypothetical protein 4560104..4560502 Rhodopseudomonas palustris CGA009 2689968 NP_949367.1 CDS RPA4031 NC_005296.1 4560558 4561145 D hypothetical protein 4560558..4561145 Rhodopseudomonas palustris CGA009 2689728 NP_949368.1 CDS purU NC_005296.1 4561152 4562015 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(4561152..4562015) Rhodopseudomonas palustris CGA009 2689921 NP_949369.1 CDS hemD NC_005296.1 4562147 4562992 D uroporphyrinogen III synthase HEM4 4562147..4562992 Rhodopseudomonas palustris CGA009 2691878 NP_949370.1 CDS RPA4034 NC_005296.1 4563239 4564471 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter periplasmic branched chain amino acid binding protein 4563239..4564471 Rhodopseudomonas palustris CGA009 2691796 NP_949371.1 CDS RPA4035 NC_005296.1 4564600 4565547 D inner-membrane translocator 4564600..4565547 Rhodopseudomonas palustris CGA009 2689730 NP_949372.1 CDS RPA4036 NC_005296.1 4565544 4566845 D inner-membrane translocator 4565544..4566845 Rhodopseudomonas palustris CGA009 2689920 NP_949373.1 CDS RPA4037 NC_005296.1 4566842 4567591 D ABC transporter ATP-binding protein 4566842..4567591 Rhodopseudomonas palustris CGA009 2691879 NP_949374.1 CDS RPA4038 NC_005296.1 4567591 4568289 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter ATP-binding protein 4567591..4568289 Rhodopseudomonas palustris CGA009 2690685 NP_949375.1 CDS RPA4039 NC_005296.1 4568455 4569033 D hypothetical protein 4568455..4569033 Rhodopseudomonas palustris CGA009 2689729 NP_949376.1 CDS RPA4040 NC_005296.1 4569156 4571108 D hypothetical protein 4569156..4571108 Rhodopseudomonas palustris CGA009 2689737 NP_949377.1 CDS RPA4041 NC_005296.1 4571291 4572217 D branched chain amino acid ABC transporter ATP-binding protein 4571291..4572217 Rhodopseudomonas palustris CGA009 2691881 NP_949378.1 CDS RPA4042 NC_005296.1 4572214 4574145 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; AMP-dependent synthetase/ligase 4572214..4574145 Rhodopseudomonas palustris CGA009 2689110 NP_949379.1 CDS RPA4043 NC_005296.1 4574213 4575151 D inner-membrane translocator 4574213..4575151 Rhodopseudomonas palustris CGA009 2689899 NP_949380.1 CDS RPA4044 NC_005296.1 4575257 4576330 D inner-membrane translocator 4575257..4576330 Rhodopseudomonas palustris CGA009 2689786 NP_949381.1 CDS RPA4045 NC_005296.1 4576388 4577668 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched chain amino-acid ABC transporter substrate-binding protein 4576388..4577668 Rhodopseudomonas palustris CGA009 2691888 NP_949382.1 CDS RPA4046 NC_005296.1 4577938 4578780 D branched chain amino acid ABC transporter ATP-binding protein 4577938..4578780 Rhodopseudomonas palustris CGA009 2689884 NP_949383.1 CDS RPA4047 NC_005296.1 4578940 4579608 R haloacid dehalogenase complement(4578940..4579608) Rhodopseudomonas palustris CGA009 2689683 NP_949384.1 CDS rfbF NC_005296.1 4580288 4581055 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; alpha-D-glucose-1-phosphate cytidylyltransferase 4580288..4581055 Rhodopseudomonas palustris CGA009 2691113 NP_949385.1 CDS rfbG NC_005296.1 4581052 4582146 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; CDP-glucose 4,6-dehydratase 4581052..4582146 Rhodopseudomonas palustris CGA009 2691056 NP_949386.1 CDS RPA4050 NC_005296.1 4582156 4582953 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4582156..4582953 Rhodopseudomonas palustris CGA009 2691892 NP_949387.1 CDS RPA4051 NC_005296.1 4582978 4583694 D oxo-acyl acyl carrier protein dehydrogenase 4582978..4583694 Rhodopseudomonas palustris CGA009 2690682 NP_949388.1 CDS RPA4052 NC_005296.1 4583678 4584796 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 3-dehydroquinate synthase 4583678..4584796 Rhodopseudomonas palustris CGA009 2691884 NP_949389.1 CDS RPA4053 NC_005296.1 4584793 4585872 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; dtdpglucose 4,6-dehydratase 4584793..4585872 Rhodopseudomonas palustris CGA009 2692787 NP_949390.1 CDS RPA4054 NC_005296.1 4585865 4587670 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acetolactate synthase large subunit 4585865..4587670 Rhodopseudomonas palustris CGA009 2692788 NP_949391.1 CDS RPA4055 NC_005296.1 4587670 4588125 D hypothetical protein 4587670..4588125 Rhodopseudomonas palustris CGA009 2690780 NP_949392.1 CDS RPA4056 NC_005296.1 4588115 4589041 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4588115..4589041 Rhodopseudomonas palustris CGA009 2690777 NP_949393.1 CDS RPA4057 NC_005296.1 4589041 4589979 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; dolichol phosphate mannose synthase 4589041..4589979 Rhodopseudomonas palustris CGA009 2692768 NP_949394.1 CDS RPA4058 NC_005296.1 4590076 4591113 R glycosyl transferase family protein complement(4590076..4591113) Rhodopseudomonas palustris CGA009 2690787 NP_949395.1 CDS RPA4059 NC_005296.1 4591214 4592116 R hypothetical protein complement(4591214..4592116) Rhodopseudomonas palustris CGA009 2691034 NP_949396.1 CDS RPA4060 NC_005296.1 4592113 4593444 R hypothetical protein complement(4592113..4593444) Rhodopseudomonas palustris CGA009 2691049 NP_949397.1 CDS RPA4061 NC_005296.1 4593550 4594539 R glycosyltransferase complement(4593550..4594539) Rhodopseudomonas palustris CGA009 2692954 NP_949398.1 CDS RPA4062 NC_005296.1 4594774 4596105 D hypothetical protein 4594774..4596105 Rhodopseudomonas palustris CGA009 2690322 NP_949399.1 CDS RPA4063 NC_005296.1 4597116 4599650 D hypothetical protein 4597116..4599650 Rhodopseudomonas palustris CGA009 2690323 NP_949400.1 CDS RPA4064 NC_005296.1 4599852 4602869 R hypothetical protein complement(4599852..4602869) Rhodopseudomonas palustris CGA009 2690328 NP_949401.1 CDS RPA4065 NC_005296.1 4602985 4605462 D hypothetical protein 4602985..4605462 Rhodopseudomonas palustris CGA009 2689743 NP_949402.1 CDS RPA4066 NC_005296.1 4605912 4605989 D hypothetical protein 4605912..4605989 Rhodopseudomonas palustris CGA009 2690837 NP_949403.1 CDS RPA4067 NC_005296.1 4606147 4606470 D hypothetical protein 4606147..4606470 Rhodopseudomonas palustris CGA009 2692968 NP_949404.1 CDS RPA4068 NC_005296.1 4606504 4606749 R hypothetical protein complement(4606504..4606749) Rhodopseudomonas palustris CGA009 2688739 NP_949405.1 CDS RPA4069 NC_005296.1 4606983 4607399 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(4606983..4607399) Rhodopseudomonas palustris CGA009 2691147 NP_949406.2 CDS msrA1 NC_005296.1 4607430 4608140 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(4607430..4608140) Rhodopseudomonas palustris CGA009 2689834 NP_949407.1 CDS carB NC_005296.1 4608699 4612028 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 4608699..4612028 Rhodopseudomonas palustris CGA009 2691126 NP_949408.1 CDS greA NC_005296.1 4612252 4612728 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 4612252..4612728 Rhodopseudomonas palustris CGA009 2691145 NP_949409.1 CDS RPA4073 NC_005296.1 4612907 4613317 D DoxD-like family protein 4612907..4613317 Rhodopseudomonas palustris CGA009 2690675 NP_949410.1 CDS RPA4074 NC_005296.1 4613354 4613836 R leucine responsive transcriptional regulator LRP/BkdR complement(4613354..4613836) Rhodopseudomonas palustris CGA009 2691136 NP_949411.1 CDS trxB NC_005296.1 4614093 4615058 D thioredoxin reductase 4614093..4615058 Rhodopseudomonas palustris CGA009 2691138 NP_949412.1 CDS RPA4076 NC_005296.1 4615067 4615990 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; LysR family transcriptional regulator 4615067..4615990 Rhodopseudomonas palustris CGA009 2690625 NP_949413.1 CDS RPA4077 NC_005296.1 4616307 4616981 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cobyrinic acid a,c-diamide synthase complement(4616307..4616981) Rhodopseudomonas palustris CGA009 2691180 NP_949414.1 CDS RPA4078 NC_005296.1 4617193 4617570 R hypothetical protein complement(4617193..4617570) Rhodopseudomonas palustris CGA009 2692798 NP_949415.1 CDS RPA4079 NC_005296.1 4617664 4617999 R hypothetical protein complement(4617664..4617999) Rhodopseudomonas palustris CGA009 2692974 NP_949416.1 CDS RPA4080 NC_005296.1 4618141 4618422 R hypothetical protein complement(4618141..4618422) Rhodopseudomonas palustris CGA009 2692794 NP_949417.1 CDS RPA4081 NC_005296.1 4618593 4619405 R Flp pilus assembly CpaB complement(4618593..4619405) Rhodopseudomonas palustris CGA009 2692795 NP_949418.1 CDS RPA4082 NC_005296.1 4619836 4621062 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; phage-like integrase 4619836..4621062 Rhodopseudomonas palustris CGA009 2689931 NP_949419.1 CDS RPA4083 NC_005296.1 4621775 4622530 D hypothetical protein 4621775..4622530 Rhodopseudomonas palustris CGA009 2692811 NP_949420.1 CDS RPA4084 NC_005296.1 4622490 4624481 D ATPase AAA 4622490..4624481 Rhodopseudomonas palustris CGA009 2692771 NP_949421.1 CDS RPA4085 NC_005296.1 4624551 4625177 D TetR family transcriptional regulator 4624551..4625177 Rhodopseudomonas palustris CGA009 2692828 NP_949422.1 CDS RPA4086 NC_005296.1 4625458 4626570 R ABC transporter permease complement(4625458..4626570) Rhodopseudomonas palustris CGA009 2689073 NP_949423.1 CDS RPA4087 NC_005296.1 4626573 4629368 R ABC-2 type transport system permease and double ATP-binding protein fusion complement(4626573..4629368) Rhodopseudomonas palustris CGA009 2690786 NP_949424.1 CDS RPA4088 NC_005296.1 4629365 4630441 R HlyD family secretion protein complement(4629365..4630441) Rhodopseudomonas palustris CGA009 2690798 NP_949425.1 CDS RPA4089 NC_005296.1 4630485 4631675 R patatin-like phospholipase domain-containing protein complement(4630485..4631675) Rhodopseudomonas palustris CGA009 2690805 NP_949426.1 CDS RPA4090 NC_005296.1 4631838 4632479 R hypothetical protein complement(4631838..4632479) Rhodopseudomonas palustris CGA009 2690799 NP_949427.1 CDS RPA4091 NC_005296.1 4632585 4633280 D TetR family transcriptional regulator 4632585..4633280 Rhodopseudomonas palustris CGA009 2690810 NP_949428.1 CDS RPA4092 NC_005296.1 4633402 4634001 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4633402..4634001) Rhodopseudomonas palustris CGA009 2690809 NP_949429.1 CDS RPA4093 NC_005296.1 4634191 4634442 R hypothetical protein complement(4634191..4634442) Rhodopseudomonas palustris CGA009 2692829 NP_949430.1 CDS RPA4094 NC_005296.1 4634535 4635371 R hypothetical protein complement(4634535..4635371) Rhodopseudomonas palustris CGA009 2692837 NP_949431.1 CDS RPA4095 NC_005296.1 4635409 4638561 R multidrug-efflux transport protein mexF complement(4635409..4638561) Rhodopseudomonas palustris CGA009 2692842 NP_949432.1 CDS RPA4096 NC_005296.1 4638566 4639741 R multidrug efflux membrane fusion protein mexE complement(4638566..4639741) Rhodopseudomonas palustris CGA009 2689089 NP_949433.1 CDS RPA4097 NC_005296.1 4639835 4640461 D TetR family transcriptional regulator 4639835..4640461 Rhodopseudomonas palustris CGA009 2692759 NP_949434.1 CDS RPA4098 NC_005296.1 4640831 4641529 D RNA polymerase ECF-type sigma factor 4640831..4641529 Rhodopseudomonas palustris CGA009 2692855 NP_949435.1 CDS RPA4099 NC_005296.1 4641574 4641816 D hypothetical protein 4641574..4641816 Rhodopseudomonas palustris CGA009 2691123 NP_949436.1 CDS RPA4100 NC_005296.1 4641838 4642200 D hypothetical protein 4641838..4642200 Rhodopseudomonas palustris CGA009 2692872 NP_949437.1 CDS RPA4101 NC_005296.1 4642335 4642760 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; organic hydroperoxide resistance protein 4642335..4642760 Rhodopseudomonas palustris CGA009 2690338 NP_949438.1 CDS RPA4102 NC_005296.1 4642801 4643262 D MarR family transcriptional regulator 4642801..4643262 Rhodopseudomonas palustris CGA009 2691031 NP_949439.1 CDS RPA4103 NC_005296.1 4643266 4643931 D glutathione S-transferase 4643266..4643931 Rhodopseudomonas palustris CGA009 2690753 NP_949440.1 CDS RPA4104 NC_005296.1 4644066 4644707 R hypothetical protein complement(4644066..4644707) Rhodopseudomonas palustris CGA009 2690354 NP_949441.1 CDS rmrA NC_005296.1 4645025 4646239 D Citation: Gonzalez-Pasayo and Martinez-Romero (2000) Mol. Plant Microbe Interact. 13:572-577; hlyD family multidrug secretion protein 4645025..4646239 Rhodopseudomonas palustris CGA009 2690353 NP_949442.1 CDS rmrB NC_005296.1 4646236 4647786 D Citation: Gonzalez-Pasayo and Martinez-Romero (2000) Mol. Plant Microbe Interact. 13:572-577; multidrug efflux pump 4646236..4647786 Rhodopseudomonas palustris CGA009 2690057 NP_949443.1 CDS oprN NC_005296.1 4647970 4649298 D outer membrane efflux protein OprN 4647970..4649298 Rhodopseudomonas palustris CGA009 2692751 NP_949444.1 CDS RPA4108 NC_005296.1 4649318 4649986 D TetR family transcriptional regulator 4649318..4649986 Rhodopseudomonas palustris CGA009 2691832 NP_949445.1 CDS RPA4109 NC_005296.1 4650058 4650372 D hypothetical protein 4650058..4650372 Rhodopseudomonas palustris CGA009 2690370 NP_949446.1 CDS mycA NC_005296.1 4650930 4652696 D in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; hypothetical protein 4650930..4652696 Rhodopseudomonas palustris CGA009 2691913 NP_949447.1 CDS RPA4111 NC_005296.1 4652962 4653267 D hypothetical protein 4652962..4653267 Rhodopseudomonas palustris CGA009 2690389 NP_949448.1 CDS RPA4112 NC_005296.1 4654732 4655625 D diguanylate cyclase 4654732..4655625 Rhodopseudomonas palustris CGA009 2692730 NP_949449.1 CDS RPA4113 NC_005296.1 4656317 4657198 D conjugal transfer protein trbB 4656317..4657198 Rhodopseudomonas palustris CGA009 2689092 NP_949450.1 CDS RPA4114 NC_005296.1 4657318 4658322 D LysR family transcriptional regulator 4657318..4658322 Rhodopseudomonas palustris CGA009 2690387 NP_949451.1 CDS trbI2 NC_005296.1 4658541 4659776 R conjugal transfer protein trbI complement(4658541..4659776) Rhodopseudomonas palustris CGA009 2690386 NP_949452.1 CDS trbG2 NC_005296.1 4659776 4660816 R conjugal transfer protein TrbG complement(4659776..4660816) Rhodopseudomonas palustris CGA009 2689038 NP_949453.1 CDS trbF2 NC_005296.1 4660813 4661496 R conjugal transfer protein TrbF complement(4660813..4661496) Rhodopseudomonas palustris CGA009 2692728 NP_949454.1 CDS RPA4118 NC_005296.1 4661500 4662795 R type IV secretion VirB6 family; conjugal transfer protein TrbL complement(4661500..4662795) Rhodopseudomonas palustris CGA009 2690398 NP_949455.1 CDS RPA4119 NC_005296.1 4662799 4663185 R TrbK complement(4662799..4663185) Rhodopseudomonas palustris CGA009 2692888 NP_949456.1 CDS RPA4120 NC_005296.1 4663182 4663919 R conjugal transfer protein TrbJ complement(4663182..4663919) Rhodopseudomonas palustris CGA009 2689010 NP_949457.1 CDS trbE2 NC_005296.1 4663916 4666357 R type IV secretion system VirB4 family; conjugal transfer ATPase TrbE complement(4663916..4666357) Rhodopseudomonas palustris CGA009 2692903 NP_949458.1 CDS RPA4122 NC_005296.1 4666367 4666630 R conjugal transfer protein TrbD complement(4666367..4666630) Rhodopseudomonas palustris CGA009 2692897 NP_949459.1 CDS trbC2 NC_005296.1 4666630 4666974 R conjugal transfer protein TrbC complement(4666630..4666974) Rhodopseudomonas palustris CGA009 2691683 NP_949460.1 CDS trbB2 NC_005296.1 4666971 4667939 R conjugal transfer protein TrbB complement(4666971..4667939) Rhodopseudomonas palustris CGA009 2692913 NP_949461.1 CDS RPA4125 NC_005296.1 4668297 4668737 R hypothetical protein complement(4668297..4668737) Rhodopseudomonas palustris CGA009 2692910 NP_949462.1 CDS RPA4126 NC_005296.1 4668694 4669896 R hypothetical protein complement(4668694..4669896) Rhodopseudomonas palustris CGA009 2692145 NP_949463.1 CDS RPA4127 NC_005296.1 4669871 4670587 R hypothetical protein complement(4669871..4670587) Rhodopseudomonas palustris CGA009 2689027 NP_949464.1 CDS RPA4128 NC_005296.1 4670603 4670845 R hypothetical protein complement(4670603..4670845) Rhodopseudomonas palustris CGA009 2691262 NP_949465.1 CDS RPA4129 NC_005296.1 4670965 4671315 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; XRE family transcriptional regulator 4670965..4671315 Rhodopseudomonas palustris CGA009 2688808 NP_949466.1 CDS RPA4130 NC_005296.1 4671312 4672205 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4671312..4672205 Rhodopseudomonas palustris CGA009 2689029 NP_949467.1 CDS RPA4131 NC_005296.1 4672420 4672884 R CopG family transcriptional regulator complement(4672420..4672884) Rhodopseudomonas palustris CGA009 2692150 NP_949468.1 CDS traG1 NC_005296.1 4672894 4674888 R type IV secretion VirD4 coupling protein family; conjugal transfer coupling protein TraG complement(4672894..4674888) Rhodopseudomonas palustris CGA009 2693011 NP_949469.1 CDS RPA4133 NC_005296.1 4675022 4675321 R hypothetical protein complement(4675022..4675321) Rhodopseudomonas palustris CGA009 2688843 NP_949470.1 CDS RPA4134 NC_005296.1 4675429 4675707 D XRE family transcriptional regulator 4675429..4675707 Rhodopseudomonas palustris CGA009 2692158 NP_949471.1 CDS RPA4135 NC_005296.1 4675844 4676341 R N-acetyltransferase GCN5 complement(4675844..4676341) Rhodopseudomonas palustris CGA009 2691961 NP_949472.1 CDS RPA4136 NC_005296.1 4676616 4678526 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; DNA topoisomerase 4676616..4678526 Rhodopseudomonas palustris CGA009 2692168 NP_949473.1 CDS RPA4137 NC_005296.1 4679131 4679562 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4679131..4679562) Rhodopseudomonas palustris CGA009 2691121 NP_949474.1 CDS RPA4138 NC_005296.1 4679786 4680169 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; phasin 2 complement(4679786..4680169) Rhodopseudomonas palustris CGA009 2691574 NP_949475.1 CDS RPA4139 NC_005296.1 4680511 4681149 R hypothetical protein complement(4680511..4681149) Rhodopseudomonas palustris CGA009 2691955 NP_949476.1 CDS RPA4140 NC_005296.1 4683029 4684075 D sensor histidine kinase 4683029..4684075 Rhodopseudomonas palustris CGA009 2691326 NP_949477.1 CDS RPA4141 NC_005296.1 4684624 4684875 D hypothetical protein 4684624..4684875 Rhodopseudomonas palustris CGA009 2689024 NP_949478.1 CDS RPA4142 NC_005296.1 4684872 4685276 D twitching motility protein PilT 4684872..4685276 Rhodopseudomonas palustris CGA009 2689020 NP_949479.1 CDS nnrR NC_005296.1 4685360 4686070 D nitric oxide responsive transcriptional regulator NnrR 4685360..4686070 Rhodopseudomonas palustris CGA009 2691950 NP_949480.1 CDS RPA4144 NC_005296.1 4686043 4686267 R hypothetical protein complement(4686043..4686267) Rhodopseudomonas palustris CGA009 2692604 NP_949481.1 CDS nirK2 NC_005296.1 4686505 4687617 D dissimilatory nitrite reductase 4686505..4687617 Rhodopseudomonas palustris CGA009 2690405 NP_949482.1 CDS RPA4146 NC_005296.1 4687786 4688667 D hypothetical protein 4687786..4688667 Rhodopseudomonas palustris CGA009 2690421 NP_949483.1 CDS RPA4147 NC_005296.1 4688895 4690361 D catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine; thymidine phosphorylase 4688895..4690361 Rhodopseudomonas palustris CGA009 2690431 NP_949484.1 CDS prsA NC_005296.1 4690358 4691269 D Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase 4690358..4691269 Rhodopseudomonas palustris CGA009 2690428 NP_949485.1 CDS RPA4149 NC_005296.1 4691266 4692894 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; beta-lactamase-like protein 4691266..4692894 Rhodopseudomonas palustris CGA009 2690439 NP_949486.1 CDS RPA4150 NC_005296.1 4693308 4693706 R hypothetical protein complement(4693308..4693706) Rhodopseudomonas palustris CGA009 2690420 NP_949487.1 CDS RPA4151 NC_005296.1 4693809 4694681 D LysR family transcriptional regulator 4693809..4694681 Rhodopseudomonas palustris CGA009 2692172 NP_949488.1 CDS fbpA NC_005296.1 4694801 4695811 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; family 1 extracellular solute-binding protein 4694801..4695811 Rhodopseudomonas palustris CGA009 2692171 NP_949489.1 CDS fpbB NC_005296.1 4695889 4697601 D binding-protein-dependent transport system inner membrane protein 4695889..4697601 Rhodopseudomonas palustris CGA009 2691834 NP_949490.1 CDS RPA4154 NC_005296.1 4697718 4698356 D hypothetical protein 4697718..4698356 Rhodopseudomonas palustris CGA009 2689006 NP_949491.1 CDS RPA4155 NC_005296.1 4698521 4699171 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 3-oxoacid CoA-transferase subunit B complement(4698521..4699171) Rhodopseudomonas palustris CGA009 2692707 NP_949492.1 CDS RPA4156 NC_005296.1 4699183 4699899 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 3-oxoacid CoA-transferase subunit A complement(4699183..4699899) Rhodopseudomonas palustris CGA009 2691840 NP_949493.1 CDS RPA4157 NC_005296.1 4700050 4702053 D hypothetical protein 4700050..4702053 Rhodopseudomonas palustris CGA009 2691842 NP_949494.1 CDS potI NC_005296.1 4702211 4703011 R binding-protein-dependent transport systems inner membrane component complement(4702211..4703011) Rhodopseudomonas palustris CGA009 2689091 NP_949495.1 CDS potH NC_005296.1 4703319 4704233 R binding-protein-dependent transport systems inner membrane component complement(4703319..4704233) Rhodopseudomonas palustris CGA009 2692182 NP_949496.1 CDS RPA4160 NC_005296.1 4704230 4705372 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; spermidine/putrescine ABC transporter ATP-binding subunit complement(4704230..4705372) Rhodopseudomonas palustris CGA009 2692186 NP_949497.1 CDS RPA4161 NC_005296.1 4705473 4706279 R hypothetical protein complement(4705473..4706279) Rhodopseudomonas palustris CGA009 2692180 NP_949498.1 CDS RPA4162 NC_005296.1 4706510 4707343 D taurine ABC transporter permease 4706510..4707343 Rhodopseudomonas palustris CGA009 2689012 NP_949499.1 CDS RPA4163 NC_005296.1 4707355 4708209 D taurine transport system ATP-binding protein 4707355..4708209 Rhodopseudomonas palustris CGA009 2690814 NP_949500.1 CDS RPA4164 NC_005296.1 4708273 4709268 D aliphatic sulfonate ABC transporter substrate-binding protein 4708273..4709268 Rhodopseudomonas palustris CGA009 2690822 NP_949501.1 CDS RPA4165 NC_005296.1 4709325 4710020 D hypothetical protein 4709325..4710020 Rhodopseudomonas palustris CGA009 2692205 NP_949502.1 CDS RPA4166 NC_005296.1 4710032 4710985 D nitrilase 4710032..4710985 Rhodopseudomonas palustris CGA009 2691281 NP_949503.1 CDS RPA4167 NC_005296.1 4711028 4713766 R diguanylate cyclase/phosphodiesterase complement(4711028..4713766) Rhodopseudomonas palustris CGA009 2691022 NP_949504.1 CDS RPA4168 NC_005296.1 4713876 4714976 D FAD dependent oxidoreductase 4713876..4714976 Rhodopseudomonas palustris CGA009 2692210 NP_949505.1 CDS RPA4169 NC_005296.1 4715067 4715798 D GntR family transcriptional regulator 4715067..4715798 Rhodopseudomonas palustris CGA009 2690923 NP_949506.1 CDS RPA4170 NC_005296.1 4716074 4717276 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched chain amino-acid ABC transporter substrate-binding protein 4716074..4717276 Rhodopseudomonas palustris CGA009 2691943 NP_949507.1 CDS RPA4171 NC_005296.1 4717693 4718007 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4717693..4718007) Rhodopseudomonas palustris CGA009 2688984 NP_949508.1 CDS RPA4172 NC_005296.1 4718090 4718449 R hypothetical protein complement(4718090..4718449) Rhodopseudomonas palustris CGA009 2690441 NP_949509.1 CDS RPA4173 NC_005296.1 4718430 4719182 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; diguanylate cyclase complement(4718430..4719182) Rhodopseudomonas palustris CGA009 2690434 NP_949510.1 CDS purE NC_005296.1 4719311 4719799 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; phosphoribosylaminoimidazole carboxylase catalytic subunit 4719311..4719799 Rhodopseudomonas palustris CGA009 2690444 NP_949511.1 CDS purK NC_005296.1 4719796 4720896 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 4719796..4720896 Rhodopseudomonas palustris CGA009 2691946 NP_949512.1 CDS rpsU NC_005296.1 4721053 4721316 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 4721053..4721316 Rhodopseudomonas palustris CGA009 2691944 NP_949513.1 CDS RPA4177 NC_005296.1 4721493 4722368 R hypothetical protein complement(4721493..4722368) Rhodopseudomonas palustris CGA009 2688952 NP_949514.1 CDS RPA4178 NC_005296.1 4722518 4722805 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4722518..4722805) Rhodopseudomonas palustris CGA009 2690954 NP_949515.1 CDS RPA4179 NC_005296.1 4723009 4723383 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4723009..4723383 Rhodopseudomonas palustris CGA009 2688997 NP_949516.1 CDS pntB NC_005296.1 4723562 4724965 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; NAD(P) transhydrogenase subunit beta complement(4723562..4724965) Rhodopseudomonas palustris CGA009 2690459 NP_949517.1 CDS pntA NC_005296.1 4724979 4725302 R nicotinamide nucleotide transhydrogenase subunit alpha2 complement(4724979..4725302) Rhodopseudomonas palustris CGA009 2688795 NP_949518.1 CDS pntA NC_005296.1 4725328 4726455 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; NAD(P)(+) transhydrogenase complement(4725328..4726455) Rhodopseudomonas palustris CGA009 2692217 NP_949519.1 CDS RPA4183 NC_005296.1 4726655 4726807 R hypothetical protein complement(4726655..4726807) Rhodopseudomonas palustris CGA009 2692225 NP_949520.1 CDS RPA4184 NC_005296.1 4727027 4727329 D hypothetical protein 4727027..4727329 Rhodopseudomonas palustris CGA009 2691707 NP_949521.1 CDS RPA4185 NC_005296.1 4727285 4729201 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; peptidase M3B oligoendopeptidase-like clade 3 complement(4727285..4729201) Rhodopseudomonas palustris CGA009 2690917 NP_949522.1 CDS RPA4186 NC_005296.1 4729537 4730202 D TerC family integral membrane protein 4729537..4730202 Rhodopseudomonas palustris CGA009 2688929 NP_949523.1 CDS RPA4187 NC_005296.1 4730298 4731785 D Fis family transcriptional regulator 4730298..4731785 Rhodopseudomonas palustris CGA009 2690466 NP_949524.1 CDS RPA4188 NC_005296.1 4732135 4734309 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4732135..4734309 Rhodopseudomonas palustris CGA009 2690472 NP_949525.1 CDS RPA4189 NC_005296.1 4734594 4736255 D hypothetical protein 4734594..4736255 Rhodopseudomonas palustris CGA009 2692687 NP_949526.1 CDS RPA4190 NC_005296.1 4736383 4736772 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4736383..4736772) Rhodopseudomonas palustris CGA009 2690491 NP_949527.1 CDS RPA4191 NC_005296.1 4736843 4737142 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4736843..4737142) Rhodopseudomonas palustris CGA009 2690490 NP_949528.1 CDS RPA4192 NC_005296.1 4737334 4737918 D hypothetical protein 4737334..4737918 Rhodopseudomonas palustris CGA009 2690488 NP_949529.1 CDS pyk NC_005296.1 4737915 4739348 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 4737915..4739348 Rhodopseudomonas palustris CGA009 2692385 NP_949530.1 CDS osmC NC_005296.1 4739575 4740003 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; OsmC-like protein complement(4739575..4740003) Rhodopseudomonas palustris CGA009 2691827 NP_949531.1 CDS RPA4195 NC_005296.1 4740000 4741004 R alpha/beta hydrolase fold protein complement(4740000..4741004) Rhodopseudomonas palustris CGA009 2688866 NP_949532.1 CDS RPA4196 NC_005296.1 4741075 4741737 R TPR repeat-containing protein complement(4741075..4741737) Rhodopseudomonas palustris CGA009 2692248 NP_949533.1 CDS rpmJ NC_005296.1 4741835 4741960 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 complement(4741835..4741960) Rhodopseudomonas palustris CGA009 2692676 NP_949534.1 CDS RPA4198 NC_005296.1 4742272 4743141 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; amidohydrolase 4742272..4743141 Rhodopseudomonas palustris CGA009 2690751 NP_949535.1 CDS RPA4199 NC_005296.1 4743290 4744027 D 2-haloacid halidohydrolase IVA 4743290..4744027 Rhodopseudomonas palustris CGA009 2693009 NP_949536.1 CDS RPA4200 NC_005296.1 4744104 4744586 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; prolyl-tRNA synthetase 4744104..4744586 Rhodopseudomonas palustris CGA009 2692933 NP_949537.1 CDS RPA4201 NC_005296.1 4744660 4744950 R hypothetical protein complement(4744660..4744950) Rhodopseudomonas palustris CGA009 2692384 NP_949538.1 CDS RPA4202 NC_005296.1 4745124 4746449 R methyl-accepting chemotaxis sensory transducer complement(4745124..4746449) Rhodopseudomonas palustris CGA009 2691709 NP_949539.1 CDS RPA4203 NC_005296.1 4746424 4746945 R methyl-accepting chemotaxis sensory transducer complement(4746424..4746945) Rhodopseudomonas palustris CGA009 2691258 NP_949540.1 CDS RPA4204 NC_005296.1 4747181 4747441 R hypothetical protein complement(4747181..4747441) Rhodopseudomonas palustris CGA009 2692663 NP_949541.1 CDS RPA4205 NC_005296.1 4747662 4749023 D PST family polysaccharide export protein 4747662..4749023 Rhodopseudomonas palustris CGA009 2692943 NP_949542.1 CDS RPA4206 NC_005296.1 4749468 4750256 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 3-hydroxybutyrate dehydrogenase complement(4749468..4750256) Rhodopseudomonas palustris CGA009 2688974 NP_949543.1 CDS RPA4207 NC_005296.1 4750305 4751444 R patatin-like phospholipase domain-containing protein complement(4750305..4751444) Rhodopseudomonas palustris CGA009 2692638 NP_949544.1 CDS RPA4208 NC_005296.1 4751539 4752054 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; allergen V5/Tpx-1-like protein complement(4751539..4752054) Rhodopseudomonas palustris CGA009 2690504 NP_949545.1 CDS glnA NC_005296.1 4752301 4753338 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glutamine synthetase complement(4752301..4753338) Rhodopseudomonas palustris CGA009 2690501 NP_949546.1 CDS RPA4210 NC_005296.1 4753765 4754016 D hypothetical protein 4753765..4754016 Rhodopseudomonas palustris CGA009 2689888 NP_949547.1 CDS glsA NC_005296.1 4754118 4755053 R catalyzes the formation of glutamate from glutamine; glutaminase complement(4754118..4755053) Rhodopseudomonas palustris CGA009 2688869 NP_949548.1 CDS RPA4212 NC_005296.1 4755200 4755709 R hypothetical protein complement(4755200..4755709) Rhodopseudomonas palustris CGA009 2692947 NP_949549.1 CDS RPA4213 NC_005296.1 4755696 4757351 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; sulfite reductase hemoprotein subunit complement(4755696..4757351) Rhodopseudomonas palustris CGA009 2691713 NP_949550.1 CDS RPA4214 NC_005296.1 4757362 4757676 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4757362..4757676) Rhodopseudomonas palustris CGA009 2692936 NP_949551.1 CDS cysG NC_005296.1 4757673 4759109 R uroporphyrin-III C-methyltransferase complement(4757673..4759109) Rhodopseudomonas palustris CGA009 2689887 NP_949552.1 CDS glcB NC_005296.1 4759508 4761682 D catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 4759508..4761682 Rhodopseudomonas palustris CGA009 2692500 NP_949553.1 CDS RPA4217 NC_005296.1 4761873 4762073 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4761873..4762073 Rhodopseudomonas palustris CGA009 2692952 NP_949554.1 CDS RPA4218 NC_005296.1 4762211 4762372 R hypothetical protein complement(4762211..4762372) Rhodopseudomonas palustris CGA009 2689835 NP_949555.1 CDS RPA4219 NC_005296.1 4762529 4763191 R hypothetical protein complement(4762529..4763191) Rhodopseudomonas palustris CGA009 2693027 NP_949556.1 CDS RPA4220 NC_005296.1 4763214 4763981 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ErfK/YbiS/YcfS/YnhG protein complement(4763214..4763981) Rhodopseudomonas palustris CGA009 2689948 NP_949557.1 CDS RPA4221 NC_005296.1 4764203 4765318 D hypothetical protein 4764203..4765318 Rhodopseudomonas palustris CGA009 2692637 NP_949558.1 CDS RPA4222 NC_005296.1 4765452 4765847 R hypothetical protein complement(4765452..4765847) Rhodopseudomonas palustris CGA009 2690629 NP_949559.1 CDS RPA4223 NC_005296.1 4766223 4767029 R in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media; two-component response regulator complement(4766223..4767029) Rhodopseudomonas palustris CGA009 2689682 NP_949560.1 CDS RPA4224 NC_005296.1 4767160 4767444 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4767160..4767444 Rhodopseudomonas palustris CGA009 2689795 NP_949561.1 CDS RPA4225 NC_005296.1 4767444 4767989 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 4767444..4767989 Rhodopseudomonas palustris CGA009 2692624 NP_949562.1 CDS RPA4226 NC_005296.1 4768147 4769913 R signal transduction histidine kinase complement(4768147..4769913) Rhodopseudomonas palustris CGA009 2690631 NP_949563.1 CDS ureG NC_005296.1 4770066 4770695 R urease accessory protein UreG complement(4770066..4770695) Rhodopseudomonas palustris CGA009 2692263 NP_949564.1 CDS RPA4228 NC_005296.1 4770919 4771263 D hypothetical protein 4770919..4771263 Rhodopseudomonas palustris CGA009 2692266 NP_949565.1 CDS RPA4229 NC_005296.1 4771282 4771632 D hypothetical protein 4771282..4771632 Rhodopseudomonas palustris CGA009 2692276 NP_949566.1 CDS RPA4230 NC_005296.1 4772098 4772382 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4772098..4772382 Rhodopseudomonas palustris CGA009 2690687 NP_949567.1 CDS RPA4231 NC_005296.1 4772451 4774562 R oxidoreductase complement(4772451..4774562) Rhodopseudomonas palustris CGA009 2690691 NP_949568.1 CDS RPA4232 NC_005296.1 4774697 4775023 D hypothetical protein 4774697..4775023 Rhodopseudomonas palustris CGA009 2693037 NP_949569.1 CDS RPA4233 NC_005296.1 4775037 4776275 R cyclic nucleotide regulated K+ channel complement(4775037..4776275) Rhodopseudomonas palustris CGA009 2693040 NP_949570.1 CDS aadR NC_005296.1 4776328 4777047 R anaerobic aromatic degradation regulator complement(4776328..4777047) Rhodopseudomonas palustris CGA009 2692622 NP_949571.1 CDS RPA4235 NC_005296.1 4777176 4777559 D cytochrome c class I 4777176..4777559 Rhodopseudomonas palustris CGA009 2689885 NP_949572.1 CDS RPA4236 NC_005296.1 4777519 4778715 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4777519..4778715) Rhodopseudomonas palustris CGA009 2690524 NP_949573.1 CDS RPA4237 NC_005296.1 4778728 4779507 R ABC transporter ATP-binding protein complement(4778728..4779507) Rhodopseudomonas palustris CGA009 2689961 NP_949574.1 CDS RPA4238 NC_005296.1 4779510 4780646 R hypothetical protein complement(4779510..4780646) Rhodopseudomonas palustris CGA009 2690528 NP_949575.1 CDS RPA4239 NC_005296.1 4780758 4781219 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4780758..4781219 Rhodopseudomonas palustris CGA009 2690521 NP_949576.1 CDS RPA4240 NC_005296.1 4781248 4783971 R GCN5-like N-acetyltransferase complement(4781248..4783971) Rhodopseudomonas palustris CGA009 2689959 NP_949577.1 CDS RPA4241 NC_005296.1 4784111 4784503 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4784111..4784503) Rhodopseudomonas palustris CGA009 2692962 NP_949578.1 CDS RPA4242 NC_005296.1 4784794 4786353 D hypothetical protein 4784794..4786353 Rhodopseudomonas palustris CGA009 2693049 NP_949579.1 CDS phaC NC_005296.1 4786335 4788101 R poly-beta-hydroxyalkanoate synthase complement(4786335..4788101) Rhodopseudomonas palustris CGA009 2690669 NP_949580.1 CDS RPA4244 NC_005296.1 4788368 4789204 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4788368..4789204) Rhodopseudomonas palustris CGA009 2691781 NP_949581.1 CDS RPA4245 NC_005296.1 4789394 4790227 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4789394..4790227 Rhodopseudomonas palustris CGA009 2693045 NP_949582.1 CDS RPA4246 NC_005296.1 4790314 4791045 D CBS/transport-associated domain-containing protein 4790314..4791045 Rhodopseudomonas palustris CGA009 2693063 NP_949583.1 CDS fixL NC_005296.1 4791190 4792716 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; two component low oxygen sensor histidine kinase 4791190..4792716 Rhodopseudomonas palustris CGA009 2693064 NP_949584.1 CDS fixJ NC_005296.1 4792709 4793320 D response regulator for histidine kinase FixL; part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes; response regulator FixJ 4792709..4793320 Rhodopseudomonas palustris CGA009 2691786 NP_949585.1 CDS RPA4249 NC_005296.1 4793406 4793798 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; chemotaxis protein CheY 4793406..4793798 Rhodopseudomonas palustris CGA009 2690670 NP_949586.1 CDS fixK NC_005296.1 4793997 4794689 D transcriptional regulator that positively regulated fixLJ operon; upregulated transcription by FixJ; part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes; transcriptional regulator FixK 4793997..4794689 Rhodopseudomonas palustris CGA009 2692271 NP_949587.1 CDS oahs NC_005296.1 4795019 4796326 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; O-acetylhomoserine/O-acetylserine sulfhydrylase 4795019..4796326 Rhodopseudomonas palustris CGA009 2692273 NP_949588.1 CDS nuoN2 NC_005296.1 4796479 4797843 R NADH dehydrogenase (quinone) complement(4796479..4797843) Rhodopseudomonas palustris CGA009 2692284 NP_949589.1 CDS nuoM2 NC_005296.1 4797854 4799296 R proton-translocating NADH-quinone oxidoreductase subunit M complement(4797854..4799296) Rhodopseudomonas palustris CGA009 2690888 NP_949590.1 CDS nuoL2 NC_005296.1 4799287 4801356 R proton-translocating NADH-quinone oxidoreductase subunit L complement(4799287..4801356) Rhodopseudomonas palustris CGA009 2693066 NP_949591.1 CDS nuoK2 NC_005296.1 4801359 4801667 R NADH-ubiquinone oxidoreductase subunit 4L complement(4801359..4801667) Rhodopseudomonas palustris CGA009 2692402 NP_949592.1 CDS nuoJ2 NC_005296.1 4801664 4802170 R NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 complement(4801664..4802170) Rhodopseudomonas palustris CGA009 2692291 NP_949593.1 CDS nuoI2 NC_005296.1 4802167 4802688 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(4802167..4802688) Rhodopseudomonas palustris CGA009 2690532 NP_949594.1 CDS nuoH2 NC_005296.1 4802685 4803644 R respiratory-chain NADH dehydrogenase subunit 1 complement(4802685..4803644) Rhodopseudomonas palustris CGA009 2691726 NP_949595.1 CDS nuoG2 NC_005296.1 4803641 4806274 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G complement(4803641..4806274) Rhodopseudomonas palustris CGA009 2691912 NP_949596.1 CDS nuoF2 NC_005296.1 4806271 4807557 R NADH dehydrogenase (quinone) complement(4806271..4807557) Rhodopseudomonas palustris CGA009 2691727 NP_949597.1 CDS nuoE2 NC_005296.1 4807554 4808042 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(4807554..4808042) Rhodopseudomonas palustris CGA009 2691731 NP_949598.1 CDS nuoCD NC_005296.1 4808039 4809784 R NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D complement(4808039..4809784) Rhodopseudomonas palustris CGA009 2693083 NP_949599.1 CDS nuoB2 NC_005296.1 4809781 4810407 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(4809781..4810407) Rhodopseudomonas palustris CGA009 2692614 NP_949600.1 CDS nuoA2 NC_005296.1 4810404 4810793 R NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 complement(4810404..4810793) Rhodopseudomonas palustris CGA009 2693090 NP_949601.1 CDS ndvA NC_005296.1 4811238 4813037 D responsible for transport of beta-1,2-glucans from the cytoplasm to periplasm; inner membrane ABC transporter permease component; Cgt; ChvA; NdvA; cyclic beta-1,2-glucan ABC transporter 4811238..4813037 Rhodopseudomonas palustris CGA009 2692401 NP_949602.1 CDS RPA4266 NC_005296.1 4813207 4814661 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Serine-type D-Ala-D-Ala carboxypeptidase 4813207..4814661 Rhodopseudomonas palustris CGA009 2692409 NP_949603.1 CDS RPA4267 NC_005296.1 4814933 4816624 D activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 4814933..4816624 Rhodopseudomonas palustris CGA009 2691735 NP_949604.1 CDS RPA4268 NC_005296.1 4816864 4817349 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; peroxiredoxin-like protein 4816864..4817349 Rhodopseudomonas palustris CGA009 2691745 NP_949605.1 CDS rnhA NC_005296.1 4817500 4817967 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(4817500..4817967) Rhodopseudomonas palustris CGA009 2692299 NP_949606.1 CDS thrB NC_005296.1 4817964 4818947 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase complement(4817964..4818947) Rhodopseudomonas palustris CGA009 2692412 NP_949607.1 CDS ispH NC_005296.1 4819047 4820009 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(4819047..4820009) Rhodopseudomonas palustris CGA009 2689111 NP_949608.1 CDS RPA4272 NC_005296.1 4820269 4820985 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4820269..4820985 Rhodopseudomonas palustris CGA009 2692599 NP_949609.1 CDS RPA4273 NC_005296.1 4821237 4821614 R hypothetical protein complement(4821237..4821614) Rhodopseudomonas palustris CGA009 2692606 NP_949610.1 CDS RPA4274 NC_005296.1 4822209 4823204 R hypothetical protein complement(4822209..4823204) Rhodopseudomonas palustris CGA009 2692308 NP_949611.1 CDS RPA4275 NC_005296.1 4823656 4824075 D hypothetical protein 4823656..4824075 Rhodopseudomonas palustris CGA009 2692305 NP_949612.1 CDS RPA4276 NC_005296.1 4824214 4824513 D hypothetical protein 4824214..4824513 Rhodopseudomonas palustris CGA009 2692419 NP_949613.1 CDS RPA4277 NC_005296.1 4826624 4827253 D hypothetical protein 4826624..4827253 Rhodopseudomonas palustris CGA009 2691306 NP_949614.1 CDS RPA4278 NC_005296.1 4827318 4827884 D hypothetical protein 4827318..4827884 Rhodopseudomonas palustris CGA009 2691815 NP_949615.1 CDS RPA4279 NC_005296.1 4828105 4828641 D hypothetical protein 4828105..4828641 Rhodopseudomonas palustris CGA009 2689536 NP_949616.1 CDS RPA4280 NC_005296.1 4828657 4829655 R AraC family transcriptional regulator complement(4828657..4829655) Rhodopseudomonas palustris CGA009 2689542 NP_949617.1 CDS RPA4281 NC_005296.1 4830173 4831345 D hypothetical protein 4830173..4831345 Rhodopseudomonas palustris CGA009 2689544 NP_949618.1 CDS RPA4282 NC_005296.1 4831532 4832005 D photopigment and puc activator 4831532..4832005 Rhodopseudomonas palustris CGA009 2689549 NP_949619.1 CDS RPA4283 NC_005296.1 4832018 4832923 R LysR family transcriptional regulator complement(4832018..4832923) Rhodopseudomonas palustris CGA009 2689560 NP_949620.1 CDS RPA4284 NC_005296.1 4833016 4833657 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; YceI like family protein 4833016..4833657 Rhodopseudomonas palustris CGA009 2689943 NP_949621.1 CDS RPA4285 NC_005296.1 4833734 4834324 D hypothetical protein 4833734..4834324 Rhodopseudomonas palustris CGA009 2689552 NP_949622.1 CDS RPA4286 NC_005296.1 4834367 4835170 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; catalytic LigB subunit of aromatic ring-opening dioxygenase 4834367..4835170 Rhodopseudomonas palustris CGA009 2692592 NP_949623.1 CDS RPA4287 NC_005296.1 4835541 4836173 R hypothetical protein complement(4835541..4836173) Rhodopseudomonas palustris CGA009 2692437 NP_949624.1 CDS RPA4288 NC_005296.1 4836310 4837083 D hypothetical protein 4836310..4837083 Rhodopseudomonas palustris CGA009 2689561 NP_949625.1 CDS RPA4289 NC_005296.1 4837083 4837640 D dual use protein Tyr:Ser/Thr phosphatase 4837083..4837640 Rhodopseudomonas palustris CGA009 2689681 NP_949626.1 CDS RPA4290 NC_005296.1 4837773 4838222 D hypothetical protein 4837773..4838222 Rhodopseudomonas palustris CGA009 2689711 NP_949627.1 CDS pucBb NC_005296.1 4838558 4838713 D light harvesting protein B-800-850 beta subunit B 4838558..4838713 Rhodopseudomonas palustris CGA009 2690915 NP_949628.1 CDS pucAb NC_005296.1 4838726 4838926 D light harvesting protein B-800-850 alpha subunit B 4838726..4838926 Rhodopseudomonas palustris CGA009 2689917 NP_949629.1 CDS RPA4293 NC_005296.1 4839395 4839613 D hypothetical protein 4839395..4839613 Rhodopseudomonas palustris CGA009 2689710 NP_949630.1 CDS RPA4294 NC_005296.1 4840036 4841637 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4840036..4841637) Rhodopseudomonas palustris CGA009 2689718 NP_949631.1 CDS purA NC_005296.1 4841675 4842967 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(4841675..4842967) Rhodopseudomonas palustris CGA009 2689771 NP_949632.1 CDS RPA4296 NC_005296.1 4843263 4843796 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4843263..4843796) Rhodopseudomonas palustris CGA009 2689794 NP_949633.1 CDS RPA4297 NC_005296.1 4843966 4844790 D aldose reductase 4843966..4844790 Rhodopseudomonas palustris CGA009 2689933 NP_949634.1 CDS RPA4298 NC_005296.1 4845043 4845702 D ATP/GTP-binding motif-containing protein 4845043..4845702 Rhodopseudomonas palustris CGA009 2689773 NP_949635.1 CDS RPA4299 NC_005296.1 4845862 4846791 D DMT family permease 4845862..4846791 Rhodopseudomonas palustris CGA009 2689994 NP_949636.1 CDS RPA4300 NC_005296.1 4847325 4848356 D DMT family permease 4847325..4848356 Rhodopseudomonas palustris CGA009 2689903 NP_949637.1 CDS RPA4301 NC_005296.1 4848372 4848566 R hypothetical protein complement(4848372..4848566) Rhodopseudomonas palustris CGA009 2690002 NP_949638.1 CDS RPA4302 NC_005296.1 4848828 4851020 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methyl-accepting chemotaxis receptor/sensory transducer complement(4848828..4851020) Rhodopseudomonas palustris CGA009 2690734 NP_949639.1 CDS RPA4303 NC_005296.1 4851150 4852121 R rubrerythrin complement(4851150..4852121) Rhodopseudomonas palustris CGA009 2690000 NP_949640.1 CDS RPA4304 NC_005296.1 4852302 4853657 D hypothetical protein 4852302..4853657 Rhodopseudomonas palustris CGA009 2692438 NP_949641.1 CDS RPA4305 NC_005296.1 4853852 4854190 R hypothetical protein complement(4853852..4854190) Rhodopseudomonas palustris CGA009 2691911 NP_949642.1 CDS RPA4306 NC_005296.1 4854274 4855959 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methyl-accepting chemotaxis receptor/sensory transducer complement(4854274..4855959) Rhodopseudomonas palustris CGA009 2690017 NP_949643.1 CDS RPA4307 NC_005296.1 4856166 4857851 R methyl-accepting chemotaxis receptor/sensory transducer complement(4856166..4857851) Rhodopseudomonas palustris CGA009 2690027 NP_949644.1 CDS serA2 NC_005296.1 4858096 4859685 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(4858096..4859685) Rhodopseudomonas palustris CGA009 2689368 NP_949645.1 CDS serC NC_005296.1 4859855 4861027 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; phosphoserine aminotransferase complement(4859855..4861027) Rhodopseudomonas palustris CGA009 2690039 NP_949646.1 CDS RPA4310 NC_005296.1 4861265 4861714 R hypothetical protein complement(4861265..4861714) Rhodopseudomonas palustris CGA009 2692440 NP_949647.1 CDS RPA4311 NC_005296.1 4861753 4863057 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methyl-accepting chemotaxis sensory transducer complement(4861753..4863057) Rhodopseudomonas palustris CGA009 2689837 NP_949648.1 CDS RPA4312 NC_005296.1 4863032 4863556 R methyl-accepting chemotaxis sensory transducer complement(4863032..4863556) Rhodopseudomonas palustris CGA009 2689925 NP_949649.1 CDS RPA4313 NC_005296.1 4863729 4864199 R acetyltransfersase complement(4863729..4864199) Rhodopseudomonas palustris CGA009 2690870 NP_949650.1 CDS gstA2 NC_005296.1 4864211 4864804 R glutathione S-transferase complement(4864211..4864804) Rhodopseudomonas palustris CGA009 2692444 NP_949651.1 CDS RPA4315 NC_005296.1 4864870 4865697 R hypothetical protein complement(4864870..4865697) Rhodopseudomonas palustris CGA009 2689373 NP_949652.1 CDS RPA4316 NC_005296.1 4865804 4866679 R hypothetical protein complement(4865804..4866679) Rhodopseudomonas palustris CGA009 2689378 NP_949653.1 CDS RPA4317 NC_005296.1 4866990 4868342 R major facilitator superfamily protein complement(4866990..4868342) Rhodopseudomonas palustris CGA009 2692591 NP_949654.1 CDS glmM NC_005296.1 4868426 4869778 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(4868426..4869778) Rhodopseudomonas palustris CGA009 2689391 NP_949655.1 CDS RPA4319 NC_005296.1 4869980 4870141 R hypothetical protein complement(4869980..4870141) Rhodopseudomonas palustris CGA009 2690723 NP_949656.1 CDS lldA NC_005296.1 4870306 4871445 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; L-lactate dehydrogenase 4870306..4871445 Rhodopseudomonas palustris CGA009 2692450 NP_949657.1 CDS paaG3 NC_005296.1 4871637 4872452 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; enoyl-CoA hydratase paaG 4871637..4872452 Rhodopseudomonas palustris CGA009 2689386 NP_949658.1 CDS RPA4322 NC_005296.1 4872601 4873059 D chemotaxis protein CheY 4872601..4873059 Rhodopseudomonas palustris CGA009 2689751 NP_949659.1 CDS RPA4323 NC_005296.1 4873169 4874002 D hypothetical protein 4873169..4874002 Rhodopseudomonas palustris CGA009 2689755 NP_949660.1 CDS RPA4324 NC_005296.1 4873999 4874490 D hypothetical protein 4873999..4874490 Rhodopseudomonas palustris CGA009 2692453 NP_949661.1 CDS aroE NC_005296.1 4874622 4875458 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; shikimate 5-dehydrogenase complement(4874622..4875458) Rhodopseudomonas palustris CGA009 2689759 NP_949662.1 CDS sulP NC_005296.1 4875560 4877311 R sulfate transporter family protein complement(4875560..4877311) Rhodopseudomonas palustris CGA009 2692576 NP_949663.1 CDS RPA4327 NC_005296.1 4877353 4877622 R XRE family transcriptional regulator complement(4877353..4877622) Rhodopseudomonas palustris CGA009 2690707 NP_949664.1 CDS RPA4328 NC_005296.1 4877790 4879841 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(4877790..4879841) Rhodopseudomonas palustris CGA009 2689766 NP_949665.1 CDS RPA4329 NC_005296.1 4880054 4880527 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4880054..4880527) Rhodopseudomonas palustris CGA009 2691964 NP_949666.1 CDS RPA4330 NC_005296.1 4880757 4881272 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4880757..4881272) Rhodopseudomonas palustris CGA009 2691259 NP_949667.1 CDS aatA NC_005296.1 4881397 4882632 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(4881397..4882632) Rhodopseudomonas palustris CGA009 2691974 NP_949668.1 CDS gstA1 NC_005296.1 4883013 4883666 D glutathione S-transferase 4883013..4883666 Rhodopseudomonas palustris CGA009 2691979 NP_949669.1 CDS RPA4333 NC_005296.1 4884085 4885248 D glucose sorbosone dehydrogenase 4884085..4885248 Rhodopseudomonas palustris CGA009 2691971 NP_949670.1 CDS RPA4334 NC_005296.1 4885462 4886310 D phospholipid/glycerol acyltransferase 4885462..4886310 Rhodopseudomonas palustris CGA009 2691988 NP_949671.1 CDS RPA4335 NC_005296.1 4886317 4887036 R unwinds double stranded DNA; replicative DNA helicase complement(4886317..4887036) Rhodopseudomonas palustris CGA009 2692582 NP_949672.1 CDS RPA4336 NC_005296.1 4887317 4888258 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; aldo/keto reductase 4887317..4888258 Rhodopseudomonas palustris CGA009 2692008 NP_949673.1 CDS RPA4337 NC_005296.1 4888708 4889451 D HAD-superfamily hydrolase 4888708..4889451 Rhodopseudomonas palustris CGA009 2692015 NP_949674.1 CDS RPA4338 NC_005296.1 4889378 4890058 R TetR family transcriptional regulator complement(4889378..4890058) Rhodopseudomonas palustris CGA009 2692019 NP_949675.1 CDS RPA4339 NC_005296.1 4890140 4890931 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 4890140..4890931 Rhodopseudomonas palustris CGA009 2692463 NP_949676.1 CDS ligE NC_005296.1 4890919 4891722 R lignin beta-ether hydrolase complement(4890919..4891722) Rhodopseudomonas palustris CGA009 2692571 NP_949677.1 CDS RPA4341 NC_005296.1 4891911 4893896 R beta-lactamase-like protein complement(4891911..4893896) Rhodopseudomonas palustris CGA009 2692007 NP_949678.1 CDS RPA4342 NC_005296.1 4894128 4895180 D hypothetical protein 4894128..4895180 Rhodopseudomonas palustris CGA009 2692563 NP_949679.1 CDS uvrB NC_005296.1 4895687 4898275 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 4895687..4898275 Rhodopseudomonas palustris CGA009 2692457 NP_949680.1 CDS RPA4344 NC_005296.1 4898366 4898599 D hypothetical protein 4898366..4898599 Rhodopseudomonas palustris CGA009 2692044 NP_949681.1 CDS RPA4345 NC_005296.1 4898852 4899241 R hypothetical protein complement(4898852..4899241) Rhodopseudomonas palustris CGA009 2691135 NP_949682.1 CDS RPA4346 NC_005296.1 4899588 4900841 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(4899588..4900841) Rhodopseudomonas palustris CGA009 2692467 NP_949683.1 CDS RPA4347 NC_005296.1 4901055 4901489 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4901055..4901489 Rhodopseudomonas palustris CGA009 2692051 NP_949684.1 CDS RPA4348 NC_005296.1 4901974 4902405 D hypothetical protein 4901974..4902405 Rhodopseudomonas palustris CGA009 2692572 NP_949685.1 CDS RPA4349 NC_005296.1 4902523 4903053 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4902523..4903053 Rhodopseudomonas palustris CGA009 2692060 NP_949686.1 CDS RPA4350 NC_005296.1 4903203 4903349 R hypothetical protein complement(4903203..4903349) Rhodopseudomonas palustris CGA009 2692073 NP_949687.1 CDS RPA4351 NC_005296.1 4903498 4903980 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl dehydratase complement(4903498..4903980) Rhodopseudomonas palustris CGA009 2692071 NP_949688.1 CDS RPA4352 NC_005296.1 4903989 4904468 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl dehydratase complement(4903989..4904468) Rhodopseudomonas palustris CGA009 2692085 NP_949689.1 CDS RPA4353 NC_005296.1 4904554 4904847 D hypothetical protein 4904554..4904847 Rhodopseudomonas palustris CGA009 2692558 NP_949690.1 CDS RPA4354 NC_005296.1 4905007 4906104 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(4905007..4906104) Rhodopseudomonas palustris CGA009 2692078 NP_949691.1 CDS pth NC_005296.1 4906232 4906852 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(4906232..4906852) Rhodopseudomonas palustris CGA009 2690985 NP_949692.1 CDS ctc NC_005296.1 4906874 4907566 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 complement(4906874..4907566) Rhodopseudomonas palustris CGA009 2692106 NP_949693.1 CDS RPA4357 NC_005296.1 4907864 4908142 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4907864..4908142) Rhodopseudomonas palustris CGA009 2690996 NP_949694.1 CDS lgt NC_005296.1 4908396 4909256 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 4908396..4909256 Rhodopseudomonas palustris CGA009 2692104 NP_949695.1 CDS RPA4359 NC_005296.1 4909253 4910392 D hypothetical protein 4909253..4910392 Rhodopseudomonas palustris CGA009 2692111 NP_949696.1 CDS RPA4360 NC_005296.1 4910389 4911162 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 4910389..4911162 Rhodopseudomonas palustris CGA009 2692553 NP_949697.1 CDS RPA4361 NC_005296.1 4911395 4912003 D hypothetical protein 4911395..4912003 Rhodopseudomonas palustris CGA009 2690577 NP_949698.1 CDS ribP NC_005296.1 4912172 4913125 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 4912172..4913125 Rhodopseudomonas palustris CGA009 2692126 NP_949699.1 CDS ribH NC_005296.1 4913326 4913871 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; riboflavin synthase subunit beta complement(4913326..4913871) Rhodopseudomonas palustris CGA009 2690998 NP_949700.1 CDS RPA4364 NC_005296.1 4914215 4914715 D hypothetical protein 4914215..4914715 Rhodopseudomonas palustris CGA009 2690580 NP_949701.1 CDS RPA4365 NC_005296.1 4914712 4915140 D N-acetyltransferase GCN5 4914712..4915140 Rhodopseudomonas palustris CGA009 2690579 NP_949702.1 CDS proC NC_005296.1 4915228 4916070 D catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 4915228..4916070 Rhodopseudomonas palustris CGA009 2692142 NP_949703.1 CDS RPA4367 NC_005296.1 4916339 4917727 R sensor signal transduction histidine kinase complement(4916339..4917727) Rhodopseudomonas palustris CGA009 2690583 NP_949704.1 CDS RPA4368 NC_005296.1 4918006 4918728 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; two-component transcriptional regulator complement(4918006..4918728) Rhodopseudomonas palustris CGA009 2690567 NP_949705.1 CDS RPA4369 NC_005296.1 4918725 4919276 R MarR family transcriptional regulator complement(4918725..4919276) Rhodopseudomonas palustris CGA009 2691854 NP_949706.1 CDS ilvE NC_005296.1 4919559 4920671 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 4919559..4920671 Rhodopseudomonas palustris CGA009 2691853 NP_949707.1 CDS mutL NC_005296.1 4920918 4922705 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(4920918..4922705) Rhodopseudomonas palustris CGA009 2690849 NP_949708.1 CDS RPA4372 NC_005296.1 4922941 4923360 R peptidyl-tRNA hydrolase domain-containing protein complement(4922941..4923360) Rhodopseudomonas palustris CGA009 2692472 NP_949709.1 CDS RPA4373 NC_005296.1 4923703 4925136 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; protease complement(4923703..4925136) Rhodopseudomonas palustris CGA009 2690570 NP_949710.1 CDS RPA4374 NC_005296.1 4925133 4926614 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; protease complement(4925133..4926614) Rhodopseudomonas palustris CGA009 2690858 NP_949711.1 CDS RPA4375 NC_005296.1 4926693 4927427 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4926693..4927427) Rhodopseudomonas palustris CGA009 2690568 NP_949712.1 CDS lspA NC_005296.1 4927491 4928039 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(4927491..4928039) Rhodopseudomonas palustris CGA009 2691751 NP_949713.1 CDS ileS NC_005296.1 4928148 4931165 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(4928148..4931165) Rhodopseudomonas palustris CGA009 2692544 NP_949714.1 CDS RPA4378 NC_005296.1 4931347 4931919 R maltose O-acetyltransferase complement(4931347..4931919) Rhodopseudomonas palustris CGA009 2692531 NP_949715.1 CDS ribF NC_005296.1 4931916 4932884 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; riboflavin biosynthesis protein RibF complement(4931916..4932884) Rhodopseudomonas palustris CGA009 2691199 NP_949716.1 CDS RPA4380 NC_005296.1 4933007 4933702 R ribonuclease T2 complement(4933007..4933702) Rhodopseudomonas palustris CGA009 2691747 NP_949717.1 CDS RPA4381 NC_005296.1 4933807 4934268 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4933807..4934268) Rhodopseudomonas palustris CGA009 2690894 NP_949718.1 CDS RPA4382 NC_005296.1 4934435 4934725 D hypothetical protein 4934435..4934725 Rhodopseudomonas palustris CGA009 2692539 NP_949719.1 CDS RPA4383 NC_005296.1 4934735 4935268 D hypothetical protein 4934735..4935268 Rhodopseudomonas palustris CGA009 2692542 NP_949720.1 CDS RPA4384 NC_005296.1 4935410 4935790 D hypothetical protein 4935410..4935790 Rhodopseudomonas palustris CGA009 2691754 NP_949721.1 CDS PA0781 NC_005296.1 4935808 4938261 D TonB-dependent receptor 4935808..4938261 Rhodopseudomonas palustris CGA009 2690892 NP_949722.1 CDS RPA4386 NC_005296.1 4938474 4938836 D hypothetical protein 4938474..4938836 Rhodopseudomonas palustris CGA009 2691764 NP_949723.1 CDS RPA4387 NC_005296.1 4938984 4941257 D ferrichrome-iron receptor 4938984..4941257 Rhodopseudomonas palustris CGA009 2690874 NP_949724.1 CDS RPA4388 NC_005296.1 4941280 4941831 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; N-acetyltransferase GCN5 complement(4941280..4941831) Rhodopseudomonas palustris CGA009 2691767 NP_949725.1 CDS RPA4389 NC_005296.1 4941839 4943701 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; small conductance mechanosensitive (MscS) Ion channel complement(4941839..4943701) Rhodopseudomonas palustris CGA009 2691210 NP_949726.1 CDS RPA4390 NC_005296.1 4943753 4944241 R NUDIX hydrolase complement(4943753..4944241) Rhodopseudomonas palustris CGA009 2692521 NP_949727.1 CDS RPA4391 NC_005296.1 4944376 4945257 D metallophosphoesterase 4944376..4945257 Rhodopseudomonas palustris CGA009 2692489 NP_949728.1 CDS RPA4392 NC_005296.1 4945303 4945851 R hypothetical protein complement(4945303..4945851) Rhodopseudomonas palustris CGA009 2691213 NP_949729.1 CDS RPA4393 NC_005296.1 4946115 4946330 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(4946115..4946330) Rhodopseudomonas palustris CGA009 2691229 NP_949730.1 CDS aceA NC_005296.1 4946355 4947989 R Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase complement(4946355..4947989) Rhodopseudomonas palustris CGA009 2691791 NP_949731.1 CDS RPA4395 NC_005296.1 4948203 4949645 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; XRE family transcriptional regulator 4948203..4949645 Rhodopseudomonas palustris CGA009 2692520 NP_949732.1 CDS RPA4396 NC_005296.1 4950947 4952305 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; lytic murein transglycosylase 4950947..4952305 Rhodopseudomonas palustris CGA009 2691236 NP_949733.1 CDS RPA4397 NC_005296.1 4952405 4953571 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; extracellular ligand-binding receptor 4952405..4953571 Rhodopseudomonas palustris CGA009 2691238 NP_949734.1 CDS RPA4398 NC_005296.1 4953733 4954497 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched chain amino acid ABC transporter ATP-binding protein 4953733..4954497 Rhodopseudomonas palustris CGA009 2690889 NP_949735.1 CDS RPA4399 NC_005296.1 4954639 4955631 D branched-chain amino acid transport system ATP-binding protein 4954639..4955631 Rhodopseudomonas palustris CGA009 2691801 NP_949736.1 CDS RPA4400 NC_005296.1 4955628 4956653 D inner-membrane translocator 4955628..4956653 Rhodopseudomonas palustris CGA009 2691130 NP_949737.1 CDS RPA4401 NC_005296.1 4956650 4957717 D inner-membrane translocator 4956650..4957717 Rhodopseudomonas palustris CGA009 2689067 NP_949738.1 CDS RPA4402 NC_005296.1 4958088 4958396 D hypothetical protein 4958088..4958396 Rhodopseudomonas palustris CGA009 2692972 NP_949739.1 CDS RPA4403 NC_005296.1 4958641 4959741 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; morphinone reductase 4958641..4959741 Rhodopseudomonas palustris CGA009 2692321 NP_949740.1 CDS RPA4404 NC_005296.1 4960215 4962005 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; family 1 extracellular solute-binding protein complement(4960215..4962005) Rhodopseudomonas palustris CGA009 2692333 NP_949741.1 CDS RPA4405 NC_005296.1 4962078 4962407 R hypothetical protein complement(4962078..4962407) Rhodopseudomonas palustris CGA009 2691118 NP_949742.1 CDS RPA4406 NC_005296.1 4962415 4963221 R binding-protein-dependent transport system inner membrane protein complement(4962415..4963221) Rhodopseudomonas palustris CGA009 2692511 NP_949743.1 CDS RPA4407 NC_005296.1 4963221 4964123 R binding-protein-dependent transport systems inner membrane component complement(4963221..4964123) Rhodopseudomonas palustris CGA009 2690358 NP_949744.1 CDS RPA4408 NC_005296.1 4964123 4965223 R sugar ABC transporter ATP-binding protein complement(4964123..4965223) Rhodopseudomonas palustris CGA009 2692991 NP_949745.1 CDS RPA4409 NC_005296.1 4965236 4966315 R sugar ABC transporter ATP-binding protein complement(4965236..4966315) Rhodopseudomonas palustris CGA009 2692992 NP_949746.1 CDS glpD NC_005296.1 4966312 4967847 R in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase complement(4966312..4967847) Rhodopseudomonas palustris CGA009 2690881 NP_949747.1 CDS glpR NC_005296.1 4968043 4968840 R glycerol-3-phosphate regulon repressor GlpR complement(4968043..4968840) Rhodopseudomonas palustris CGA009 2690869 NP_949748.1 CDS RPA4412 NC_005296.1 4969028 4969645 R hypothetical protein complement(4969028..4969645) Rhodopseudomonas palustris CGA009 2693000 NP_949749.1 CDS RPA4413 NC_005296.1 4969663 4970277 R TetR family transcriptional regulator complement(4969663..4970277) Rhodopseudomonas palustris CGA009 2690645 NP_949750.1 CDS RPA4414 NC_005296.1 4970295 4973432 R RND efflux transporter complement(4970295..4973432) Rhodopseudomonas palustris CGA009 2690590 NP_949751.1 CDS RPA4415 NC_005296.1 4973454 4974557 R component of multidrug efflux system complement(4973454..4974557) Rhodopseudomonas palustris CGA009 2689458 NP_949752.1 CDS RPA4416 NC_005296.1 4974669 4975148 R hypothetical protein complement(4974669..4975148) Rhodopseudomonas palustris CGA009 2689090 NP_949753.1 CDS RPA4417 NC_005296.1 4975255 4977876 R sensor histidine kinase complement(4975255..4977876) Rhodopseudomonas palustris CGA009 2692448 NP_949754.1 CDS RPA4418 NC_005296.1 4978268 4978483 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; CsbD-like protein 4978268..4978483 Rhodopseudomonas palustris CGA009 2691673 NP_949755.1 CDS ggt3 NC_005296.1 4978588 4980174 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; gamma-glutamyltransferase complement(4978588..4980174) Rhodopseudomonas palustris CGA009 2688732 NP_949756.1 CDS RPA4420 NC_005296.1 4980422 4980637 D SlyX family protein 4980422..4980637 Rhodopseudomonas palustris CGA009 2690589 NP_949757.1 CDS RPA4421 NC_005296.1 4980789 4982339 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; AMP-dependent synthetase/ligase complement(4980789..4982339) Rhodopseudomonas palustris CGA009 2690861 NP_949758.1 CDS RPA4422 NC_005296.1 4982674 4983387 R Crp/Fnr family transcriptional regulator complement(4982674..4983387) Rhodopseudomonas palustris CGA009 2693005 NP_949759.1 CDS RPA4423 NC_005296.1 4983518 4983931 R hypothetical protein complement(4983518..4983931) Rhodopseudomonas palustris CGA009 2690873 NP_949760.1 CDS RPA4424 NC_005296.1 4984072 4984920 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; beta-lactamase-like protein 4984072..4984920 Rhodopseudomonas palustris CGA009 2690863 NP_949761.1 CDS RPA4425 NC_005296.1 4985030 4985872 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase 4985030..4985872 Rhodopseudomonas palustris CGA009 2690875 NP_949762.1 CDS RPA4426 NC_005296.1 4985991 4986608 D glutathione S-transferase 4985991..4986608 Rhodopseudomonas palustris CGA009 2692995 NP_949763.1 CDS ogt1 NC_005296.1 4986620 4987168 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methylated-DNA--protein-cysteine methyltransferase complement(4986620..4987168) Rhodopseudomonas palustris CGA009 2692996 NP_949764.1 CDS RPA4428 NC_005296.1 4987215 4987754 R glucosyltransferase I complement(4987215..4987754) Rhodopseudomonas palustris CGA009 2692993 NP_949765.1 CDS RPA4429 NC_005296.1 4987875 4989020 R hypothetical protein complement(4987875..4989020) Rhodopseudomonas palustris CGA009 2692501 NP_949766.1 CDS RPA4430 NC_005296.1 4989025 4991355 R TonB-dependent receptor complement(4989025..4991355) Rhodopseudomonas palustris CGA009 2691255 NP_949767.1 CDS RPA4431 NC_005296.1 4998672 5000702 D peptidase M23B 4998672..5000702 Rhodopseudomonas palustris CGA009 2690893 NP_949768.1 CDS RPA4432 NC_005296.1 5000844 5002478 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; NHL repeat-containing protein 5000844..5002478 Rhodopseudomonas palustris CGA009 2690871 NP_949769.1 CDS clpB NC_005296.1 5002756 5005395 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; endopeptidase Clp ATP-binding subunit B complement(5002756..5005395) Rhodopseudomonas palustris CGA009 2692471 NP_949770.1 CDS RPA4434 NC_005296.1 5005622 5006410 D MOSC domain-containing protein 5005622..5006410 Rhodopseudomonas palustris CGA009 2690902 NP_949771.1 CDS RPA4435 NC_005296.1 5006617 5007360 R hypothetical protein complement(5006617..5007360) Rhodopseudomonas palustris CGA009 2692535 NP_949772.1 CDS RPA4436 NC_005296.1 5007582 5008277 R methionine biosynthesis MetW complement(5007582..5008277) Rhodopseudomonas palustris CGA009 2692469 NP_949773.1 CDS metX NC_005296.1 5008280 5009482 R Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase complement(5008280..5009482) Rhodopseudomonas palustris CGA009 2690555 NP_949774.1 CDS aro NC_005296.1 5009734 5010681 D hypothetical protein 5009734..5010681 Rhodopseudomonas palustris CGA009 2690560 NP_949775.1 CDS hisC NC_005296.1 5010724 5011821 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 5010724..5011821 Rhodopseudomonas palustris CGA009 2690880 NP_949776.1 CDS tyrC NC_005296.1 5011818 5012759 D dual function enzyme catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate; cyclohexadienyl dehydrogenase 5011818..5012759 Rhodopseudomonas palustris CGA009 2690995 NP_949777.1 CDS corA NC_005296.1 5013079 5014059 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Mg2+ transporter complement(5013079..5014059) Rhodopseudomonas palustris CGA009 2692551 NP_949778.1 CDS RPA4442 NC_005296.1 5014406 5015089 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ErfK/YbiS/YcfS/YnhG protein 5014406..5015089 Rhodopseudomonas palustris CGA009 2692560 NP_949779.1 CDS RPA4443 NC_005296.1 5016593 5018221 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 5016593..5018221 Rhodopseudomonas palustris CGA009 2690997 NP_949780.1 CDS RPA4444 NC_005296.1 5019052 5019897 D hypothetical protein 5019052..5019897 Rhodopseudomonas palustris CGA009 2692569 NP_949781.1 CDS RPA4445 NC_005296.1 5019977 5020276 R hypothetical protein complement(5019977..5020276) Rhodopseudomonas palustris CGA009 2691134 NP_949782.1 CDS RPA4446 NC_005296.1 5020355 5020798 R hypothetical protein complement(5020355..5020798) Rhodopseudomonas palustris CGA009 2692565 NP_949783.1 CDS RPA4447 NC_005296.1 5020795 5021214 R hypothetical protein complement(5020795..5021214) Rhodopseudomonas palustris CGA009 2692458 NP_949784.1 CDS RPA4448 NC_005296.1 5021211 5021945 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(5021211..5021945) Rhodopseudomonas palustris CGA009 2692559 NP_949785.1 CDS RPA4449 NC_005296.1 5022729 5024420 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; pmethyl-accepting chemotaxis receptor/sensory transducer 5022729..5024420 Rhodopseudomonas palustris CGA009 2692462 NP_949786.1 CDS RPA4450 NC_005296.1 5024628 5026223 D hypothetical protein 5024628..5026223 Rhodopseudomonas palustris CGA009 2692447 NP_949787.1 CDS RPA4451 NC_005296.1 5026213 5027448 D hypothetical protein 5026213..5027448 Rhodopseudomonas palustris CGA009 2692452 NP_949788.1 CDS RPA4452 NC_005296.1 5027445 5028905 D pyridoxal-dependent decarboxylase 5027445..5028905 Rhodopseudomonas palustris CGA009 2690721 NP_949789.1 CDS RPA4453 NC_005296.1 5029184 5030011 R hypothetical protein complement(5029184..5030011) Rhodopseudomonas palustris CGA009 2692446 NP_949790.1 CDS RPA4454 NC_005296.1 5030013 5030606 R 5-formyltetrahydrofolate cyclo-ligase complement(5030013..5030606) Rhodopseudomonas palustris CGA009 2691897 NP_949791.1 CDS RPA4455 NC_005296.1 5030895 5031479 D hypothetical protein 5030895..5031479 Rhodopseudomonas palustris CGA009 2690999 NP_949792.1 CDS RPA4456 NC_005296.1 5031753 5032292 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 5031753..5032292 Rhodopseudomonas palustris CGA009 2691007 NP_949793.1 CDS RPA4457 NC_005296.1 5032374 5032763 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; sulfide dehydrogenase complement(5032374..5032763) Rhodopseudomonas palustris CGA009 2691012 NP_949794.1 CDS RPA4458 NC_005296.1 5032787 5033263 R isoprenylcysteine carboxyl methyltransferase complement(5032787..5033263) Rhodopseudomonas palustris CGA009 2692443 NP_949795.1 CDS dhsU2 NC_005296.1 5033288 5034580 R flavocytochrome C sulfide dehydrogenase flavoprotein subunit complement(5033288..5034580) Rhodopseudomonas palustris CGA009 2691909 NP_949796.1 CDS dhsU1 NC_005296.1 5034620 5035885 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; flavocytochrome C sulfide dehydrogenase flavoprotein subunit complement(5034620..5035885) Rhodopseudomonas palustris CGA009 2692436 NP_949797.1 CDS RPA4461 NC_005296.1 5035913 5036335 R cytochrome subunit of sulfide dehydrogenase complement(5035913..5036335) Rhodopseudomonas palustris CGA009 2690731 NP_949798.1 CDS RPA4462 NC_005296.1 5036372 5037511 R Lipocalin-like protein and Bos/Can/Equ allergen complement(5036372..5037511) Rhodopseudomonas palustris CGA009 2690738 NP_949799.1 CDS RPA4463 NC_005296.1 5037696 5038451 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; cytochrome complement(5037696..5038451) Rhodopseudomonas palustris CGA009 2692433 NP_949800.1 CDS soxC NC_005296.1 5038435 5039730 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; sulfite dehydrogenase complement(5038435..5039730) Rhodopseudomonas palustris CGA009 2692428 NP_949801.1 CDS soxB NC_005296.1 5039800 5041497 R sulfur/thiosulfate oxidation protein SoxB complement(5039800..5041497) Rhodopseudomonas palustris CGA009 2690903 NP_949802.1 CDS soxZ2 NC_005296.1 5041640 5041969 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; sulfur oxidation protein SoxZ complement(5041640..5041969) Rhodopseudomonas palustris CGA009 2690914 NP_949803.1 CDS soxY2 NC_005296.1 5042008 5042472 R with SoxZ catalyzes the oxidation of sulfur compounds; sulfur oxidation protein SoxY complement(5042008..5042472) Rhodopseudomonas palustris CGA009 2692414 NP_949804.1 CDS RPA4468 NC_005296.1 5042658 5043479 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 5042658..5043479 Rhodopseudomonas palustris CGA009 2690916 NP_949805.1 CDS RPA4469 NC_005296.1 5043493 5044236 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 5043493..5044236 Rhodopseudomonas palustris CGA009 2690918 NP_949806.1 CDS RPA4470 NC_005296.1 5044401 5044898 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 5044401..5044898 Rhodopseudomonas palustris CGA009 2692602 NP_949807.1 CDS RPA4471 NC_005296.1 5045047 5045640 R hypothetical protein complement(5045047..5045640) Rhodopseudomonas palustris CGA009 2692421 NP_949808.1 CDS RPA4472 NC_005296.1 5045669 5046412 R c-type cytochrome biogenesis protein complement(5045669..5046412) Rhodopseudomonas palustris CGA009 2692418 NP_949809.1 CDS RPA4473 NC_005296.1 5046561 5046857 D hypothetical protein 5046561..5046857 Rhodopseudomonas palustris CGA009 2691806 NP_949810.1 CDS RPA4474 NC_005296.1 5046896 5047270 D ArsR family transcriptional regulator 5046896..5047270 Rhodopseudomonas palustris CGA009 2691816 NP_949811.1 CDS RPA4475 NC_005296.1 5047347 5048549 D hypothetical protein 5047347..5048549 Rhodopseudomonas palustris CGA009 2692411 NP_949812.1 CDS RPA4476 NC_005296.1 5048464 5048976 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(5048464..5048976) Rhodopseudomonas palustris CGA009 2692416 NP_949813.1 CDS RPA4477 NC_005296.1 5049148 5050203 R hypothetical protein complement(5049148..5050203) Rhodopseudomonas palustris CGA009 2689107 NP_949814.1 CDS RPA4478 NC_005296.1 5050403 5050708 R hypothetical protein complement(5050403..5050708) Rhodopseudomonas palustris CGA009 2692406 NP_949815.1 CDS czcA3 NC_005296.1 5050705 5053800 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; heavy metal cation efflux system protein complement(5050705..5053800) Rhodopseudomonas palustris CGA009 2692392 NP_949816.1 CDS czcB NC_005296.1 5053801 5054907 R RND divalent metal cation efflux membrane fusion protein CzcB complement(5053801..5054907) Rhodopseudomonas palustris CGA009 2688827 NP_949817.1 CDS RPA4481 NC_005296.1 5055101 5056423 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methyl-accepting chemotaxis sensory transducer complement(5055101..5056423) Rhodopseudomonas palustris CGA009 2691917 NP_949818.1 CDS RPA4482 NC_005296.1 5056386 5056922 R methyl-accepting chemotaxis sensory transducer complement(5056386..5056922) Rhodopseudomonas palustris CGA009 2692387 NP_949819.1 CDS RPA4483 NC_005296.1 5057092 5058342 R methyl-accepting chemotaxis sensory transducer complement(5057092..5058342) Rhodopseudomonas palustris CGA009 2690648 NP_949820.1 CDS RPA4484 NC_005296.1 5058377 5058910 R methyl-accepting chemotaxis sensory transducer complement(5058377..5058910) Rhodopseudomonas palustris CGA009 2690654 NP_949821.1 CDS mutY NC_005296.1 5059087 5060136 R A/G-specific adenine glycosylase complement(5059087..5060136) Rhodopseudomonas palustris CGA009 2690660 NP_949822.1 CDS RPA4486 NC_005296.1 5060243 5060722 D hypothetical protein 5060243..5060722 Rhodopseudomonas palustris CGA009 2690679 NP_949823.1 CDS RPA4487 NC_005296.1 5060865 5061539 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; twin-arginine translocation pathway signal 5060865..5061539 Rhodopseudomonas palustris CGA009 2690680 NP_949824.1 CDS RPA4488 NC_005296.1 5062553 5062840 D excinuclease ABC subunit C 5062553..5062840 Rhodopseudomonas palustris CGA009 2692615 NP_949825.1 CDS RPA4489 NC_005296.1 5063290 5066823 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; chromosome segregation protein SMC 5063290..5066823 Rhodopseudomonas palustris CGA009 2690684 NP_949826.1 CDS RPA4490 NC_005296.1 5067098 5068078 D hypothetical protein 5067098..5068078 Rhodopseudomonas palustris CGA009 2690681 NP_949827.1 CDS RPA4491 NC_005296.1 5068489 5071404 R hypothetical protein complement(5068489..5071404) Rhodopseudomonas palustris CGA009 2690686 NP_949828.1 CDS apt NC_005296.1 5071736 5072281 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 5071736..5072281 Rhodopseudomonas palustris CGA009 2689944 NP_949829.1 CDS RPA4493 NC_005296.1 5072490 5073155 R hypothetical protein complement(5072490..5073155) Rhodopseudomonas palustris CGA009 2689964 NP_949830.1 CDS RPA4494 NC_005296.1 5073214 5073987 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(5073214..5073987) Rhodopseudomonas palustris CGA009 2692623 NP_949831.1 CDS htpX NC_005296.1 5074168 5075364 R peptidase M48 Ste24p complement(5074168..5075364) Rhodopseudomonas palustris CGA009 2692632 NP_949832.1 CDS trpG NC_005296.1 5076071 5078230 R trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; anthranilate synthase complement(5076071..5078230) Rhodopseudomonas palustris CGA009 2691925 NP_949833.1 CDS RPA4499 NC_005296.1 5078463 5079113 R hypothetical protein complement(5078463..5079113) Rhodopseudomonas palustris CGA009 2691931 NP_949834.1 CDS RPA4500 NC_005296.1 5079891 5080097 D hypothetical protein 5079891..5080097 Rhodopseudomonas palustris CGA009 2691935 NP_949835.1 CDS RPA4501 NC_005296.1 5080134 5080352 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; PhnA protein complement(5080134..5080352) Rhodopseudomonas palustris CGA009 2692627 NP_949836.1 CDS RPA4502 NC_005296.1 5080486 5081175 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; outer membrane protein complement(5080486..5081175) Rhodopseudomonas palustris CGA009 2689790 NP_949837.1 CDS RPA4503 NC_005296.1 5081408 5081668 R hypothetical protein complement(5081408..5081668) Rhodopseudomonas palustris CGA009 2692495 NP_949838.1 CDS RPA4504 NC_005296.1 5081847 5083757 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; AMP-dependent synthetase/ligase complement(5081847..5083757) Rhodopseudomonas palustris CGA009 2689945 NP_949839.1 CDS RPA4505 NC_005296.1 5083938 5084684 R TPR repeat-containing protein complement(5083938..5084684) Rhodopseudomonas palustris CGA009 2692505 NP_949840.1 CDS RPA4506 NC_005296.1 5084870 5085673 R short-chain alcohol dehydrogenase complement(5084870..5085673) Rhodopseudomonas palustris CGA009 2692652 NP_949841.1 CDS RPA4507 NC_005296.1 5085773 5087557 R elongator protein 3/MiaB/NifB complement(5085773..5087557) Rhodopseudomonas palustris CGA009 2692509 NP_949842.1 CDS RPA4508 NC_005296.1 5088621 5088992 R hypothetical protein complement(5088621..5088992) Rhodopseudomonas palustris CGA009 2692656 NP_949843.1 CDS RPA4509 NC_005296.1 5088989 5091109 R TRAP dicarboxylate family transporter subunit DctM complement(5088989..5091109) Rhodopseudomonas palustris CGA009 2692388 NP_949844.1 CDS RPA4510 NC_005296.1 5091256 5092203 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; TRAP transporter solute receptor TAXI family protein complement(5091256..5092203) Rhodopseudomonas palustris CGA009 2692675 NP_949845.1 CDS RPA4511 NC_005296.1 5092359 5093624 D major facilitator transporter 5092359..5093624 Rhodopseudomonas palustris CGA009 2692386 NP_949846.1 CDS RPA4512 NC_005296.1 5093642 5093953 R response regulator receiver complement(5093642..5093953) Rhodopseudomonas palustris CGA009 2692681 NP_949847.1 CDS RPA4513 NC_005296.1 5094008 5095012 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; signal transduction histidine kinase complement(5094008..5095012) Rhodopseudomonas palustris CGA009 2692682 NP_949848.1 CDS RPA4514 NC_005296.1 5095094 5096794 D alkaline phosphatase 5095094..5096794 Rhodopseudomonas palustris CGA009 2692685 NP_949849.1 CDS RPA4515 NC_005296.1 5096930 5097937 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 5096930..5097937 Rhodopseudomonas palustris CGA009 2690925 NP_949850.1 CDS vieA NC_005296.1 5098179 5099393 D cylclic diguanylate phosphodiesterase 5098179..5099393 Rhodopseudomonas palustris CGA009 2690937 NP_949851.1 CDS RPA4517 NC_005296.1 5099410 5099970 R hypothetical protein complement(5099410..5099970) Rhodopseudomonas palustris CGA009 2688950 NP_949852.1 CDS RPA4518 NC_005296.1 5100110 5100445 D hypothetical protein 5100110..5100445 Rhodopseudomonas palustris CGA009 2690951 NP_949853.1 CDS RPA4519 NC_005296.1 5100464 5101675 R hypothetical protein complement(5100464..5101675) Rhodopseudomonas palustris CGA009 2690953 NP_949854.1 CDS RPA4520 NC_005296.1 5101811 5102437 R NUDIX hydrolase complement(5101811..5102437) Rhodopseudomonas palustris CGA009 2691932 NP_949855.1 CDS RPA4521 NC_005296.1 5102565 5102942 D thioesterase 5102565..5102942 Rhodopseudomonas palustris CGA009 2688895 NP_949856.1 CDS cbbY NC_005296.1 5102958 5103704 R haloacid dehalogenase complement(5102958..5103704) Rhodopseudomonas palustris CGA009 2691938 NP_949857.1 CDS RPA4523 NC_005296.1 5103980 5104369 R chemotaxis protein CheY complement(5103980..5104369) Rhodopseudomonas palustris CGA009 2688746 NP_949858.1 CDS RPA4524 NC_005296.1 5104629 5106185 R sensor histidine kinase complement(5104629..5106185) Rhodopseudomonas palustris CGA009 2691017 NP_949859.1 CDS RPA4525 NC_005296.1 5106564 5106995 D hypothetical protein 5106564..5106995 Rhodopseudomonas palustris CGA009 2689003 NP_949860.1 CDS RPA4526 NC_005296.1 5107465 5107899 D hypothetical protein 5107465..5107899 Rhodopseudomonas palustris CGA009 2689002 NP_949861.1 CDS maf NC_005296.1 5108324 5109043 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(5108324..5109043) Rhodopseudomonas palustris CGA009 2692699 NP_949862.1 CDS RPA4528 NC_005296.1 5109044 5110210 R hypothetical protein complement(5109044..5110210) Rhodopseudomonas palustris CGA009 2689005 NP_949863.1 CDS arsC4 NC_005296.1 5110793 5111263 R protein tyrosine phosphatase complement(5110793..5111263) Rhodopseudomonas palustris CGA009 2692684 NP_949864.1 CDS RPA4530 NC_005296.1 5111319 5111810 R hypothetical protein complement(5111319..5111810) Rhodopseudomonas palustris CGA009 2692702 NP_949865.1 CDS hisD NC_005296.1 5111807 5113102 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(5111807..5113102) Rhodopseudomonas palustris CGA009 2689094 NP_949866.1 CDS RPA4532 NC_005296.1 5113226 5113681 R hypothetical protein complement(5113226..5113681) Rhodopseudomonas palustris CGA009 2689016 NP_949867.1 CDS murA NC_005296.1 5113701 5114990 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(5113701..5114990) Rhodopseudomonas palustris CGA009 2692712 NP_949868.1 CDS RPA4534 NC_005296.1 5115149 5115622 R hypothetical protein complement(5115149..5115622) Rhodopseudomonas palustris CGA009 2692720 NP_949869.1 CDS RPA4535 NC_005296.1 5115658 5115945 D hypothetical protein 5115658..5115945 Rhodopseudomonas palustris CGA009 2692510 NP_949870.1 CDS RPA4536 NC_005296.1 5116011 5117702 R cyclic nucleotide regulated pyridine nucleotide-disulfide oxidoreductase complement(5116011..5117702) Rhodopseudomonas palustris CGA009 2691952 NP_949871.1 CDS RPA4537 NC_005296.1 5118019 5118465 D hypothetical protein 5118019..5118465 Rhodopseudomonas palustris CGA009 2689047 NP_949872.1 CDS RPA4538 NC_005296.1 5118975 5119751 R hypothetical protein complement(5118975..5119751) Rhodopseudomonas palustris CGA009 2693014 NP_949873.1 CDS RPA4539 NC_005296.1 5119758 5120303 R hypothetical protein complement(5119758..5120303) Rhodopseudomonas palustris CGA009 2689032 NP_949874.1 CDS RPA4540 NC_005296.1 5120345 5120974 D hypothetical protein 5120345..5120974 Rhodopseudomonas palustris CGA009 2688756 NP_949875.1 CDS rlgA NC_005296.1 5121110 5121649 R DNA invertase gene rlgA complement(5121110..5121649) Rhodopseudomonas palustris CGA009 2691682 NP_949876.1 CDS RPA4542 NC_005296.1 5122393 5122692 D hypothetical protein 5122393..5122692 Rhodopseudomonas palustris CGA009 2691690 NP_949877.1 CDS RPA4543 NC_005296.1 5122780 5123184 R hypothetical protein complement(5122780..5123184) Rhodopseudomonas palustris CGA009 2689035 NP_949878.1 CDS RPA4544 NC_005296.1 5123181 5123774 R hypothetical protein complement(5123181..5123774) Rhodopseudomonas palustris CGA009 2691691 NP_949879.1 CDS RPA4545 NC_005296.1 5123771 5124109 R hypothetical protein complement(5123771..5124109) Rhodopseudomonas palustris CGA009 2692735 NP_949880.1 CDS RPA4546 NC_005296.1 5124106 5126418 R hypothetical protein complement(5124106..5126418) Rhodopseudomonas palustris CGA009 2692747 NP_949881.1 CDS RPA4547 NC_005296.1 5126565 5127233 R hypothetical protein complement(5126565..5127233) Rhodopseudomonas palustris CGA009 2689045 NP_949882.1 CDS RPA4548 NC_005296.1 5127230 5127577 R hypothetical protein complement(5127230..5127577) Rhodopseudomonas palustris CGA009 2692748 NP_949883.1 CDS RPA4549 NC_005296.1 5127998 5129380 R Phage integrase complement(5127998..5129380) Rhodopseudomonas palustris CGA009 2689048 NP_949884.1 CDS RPA4550 NC_005296.1 5129811 5130200 D hypothetical protein 5129811..5130200 Rhodopseudomonas palustris CGA009 2689053 NP_949885.1 CDS RPA4551 NC_005296.1 5130324 5131613 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 5130324..5131613 Rhodopseudomonas palustris CGA009 2689058 NP_949886.1 CDS RPA4552 NC_005296.1 5131650 5132891 R 4-hydroxybutyrate-CoA transferase/hydrolase complement(5131650..5132891) Rhodopseudomonas palustris CGA009 2691033 NP_949887.1 CDS RPA4553 NC_005296.1 5132918 5134084 R acyl-CoA dehydrogenase complement(5132918..5134084) Rhodopseudomonas palustris CGA009 2691030 NP_949888.1 CDS dctM2 NC_005296.1 5134138 5135427 R TRAP dicarboxylate family transporter subunit DctM complement(5134138..5135427) Rhodopseudomonas palustris CGA009 2689061 NP_949889.1 CDS RPA4555 NC_005296.1 5135439 5135990 R TRAP dicarboxylate family transporter subunit DctQ complement(5135439..5135990) Rhodopseudomonas palustris CGA009 2692763 NP_949890.1 CDS RPA4556 NC_005296.1 5136024 5137049 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; TRAP dicarboxylate family transporter subunit DctP complement(5136024..5137049) Rhodopseudomonas palustris CGA009 2689130 NP_949891.1 CDS RPA4557 NC_005296.1 5137253 5138449 D hypothetical protein 5137253..5138449 Rhodopseudomonas palustris CGA009 2692755 NP_949892.1 CDS RPA4558 NC_005296.1 5138494 5138946 D acyl dehydratase 5138494..5138946 Rhodopseudomonas palustris CGA009 2689109 NP_949893.1 CDS RPA4559 NC_005296.1 5138946 5139794 D citrate lyase subunit beta 5138946..5139794 Rhodopseudomonas palustris CGA009 2692769 NP_949894.1 CDS RPA4560 NC_005296.1 5139835 5140566 D IclR family transcriptional regulator 5139835..5140566 Rhodopseudomonas palustris CGA009 2689074 NP_949895.1 CDS RPA4561 NC_005296.1 5140697 5141761 R catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase complement(5140697..5141761) Rhodopseudomonas palustris CGA009 2690573 NP_949896.1 CDS apbA/panE NC_005296.1 5141828 5142733 D 2-dehydropantoate 2-reductase 5141828..5142733 Rhodopseudomonas palustris CGA009 2690595 NP_949897.1 CDS exoI2 NC_005296.1 5142735 5143484 R nuclease complement(5142735..5143484) Rhodopseudomonas palustris CGA009 2690594 NP_949898.1 CDS RPA4564 NC_005296.1 5143612 5144526 D phenylacetic acid degradation-like protein 5143612..5144526 Rhodopseudomonas palustris CGA009 2690609 NP_949899.1 CDS RPA4565 NC_005296.1 5144704 5145906 D diguanylate cyclase 5144704..5145906 Rhodopseudomonas palustris CGA009 2690614 NP_949900.1 CDS ackA NC_005296.1 5145907 5147103 R acetate kinase complement(5145907..5147103) Rhodopseudomonas palustris CGA009 2690622 NP_949901.1 CDS pta NC_005296.1 5147100 5148515 R Catalyses the synthesis of acetylphosphate from acetyl-CoA and inorganic phosphate; bifunctional enoyl-CoA hydratase/phosphate acetyltransferase complement(5147100..5148515) Rhodopseudomonas palustris CGA009 2692971 NP_949902.1 CDS RPA4568 NC_005296.1 5148539 5149300 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase complement(5148539..5149300) Rhodopseudomonas palustris CGA009 2691140 NP_949903.1 CDS RPA4569 NC_005296.1 5149383 5150252 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(5149383..5150252) Rhodopseudomonas palustris CGA009 2692973 NP_949904.1 CDS RPA4570 NC_005296.1 5150634 5152016 D hypothetical protein 5150634..5152016 Rhodopseudomonas palustris CGA009 2692970 NP_949905.1 CDS RPA4571 NC_005296.1 5152095 5152499 R hypothetical protein complement(5152095..5152499) Rhodopseudomonas palustris CGA009 2688744 NP_949906.1 CDS htrA/degQ/degS NC_005296.1 5152730 5154292 R serine protease complement(5152730..5154292) Rhodopseudomonas palustris CGA009 2691047 NP_949907.1 CDS RPA4573 NC_005296.1 5154547 5155035 R hypothetical protein complement(5154547..5155035) Rhodopseudomonas palustris CGA009 2691045 NP_949908.1 CDS RPA4574 NC_005296.1 5155144 5155428 R hypothetical protein complement(5155144..5155428) Rhodopseudomonas palustris CGA009 2692772 NP_949909.1 CDS RPA4575 NC_005296.1 5155586 5157151 D sugar ABC transporter ATP-binding protein 5155586..5157151 Rhodopseudomonas palustris CGA009 2692964 NP_949910.1 CDS RPA4576 NC_005296.1 5157135 5158226 D sugar ABC transporter permease 5157135..5158226 Rhodopseudomonas palustris CGA009 2691891 NP_949911.1 CDS RPA4577 NC_005296.1 5158213 5159130 D sugar ABC transporter permease 5158213..5159130 Rhodopseudomonas palustris CGA009 2692797 NP_949912.1 CDS RPA4578 NC_005296.1 5159212 5160309 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; basic membrane lipoprotein 5159212..5160309 Rhodopseudomonas palustris CGA009 2691044 NP_949913.1 CDS RPA4579 NC_005296.1 5160505 5161548 R PDZ/DHR/GLGF domain-containing protein complement(5160505..5161548) Rhodopseudomonas palustris CGA009 2691889 NP_949914.1 CDS RPA4580 NC_005296.1 5161590 5162597 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(5161590..5162597) Rhodopseudomonas palustris CGA009 2691129 NP_949915.1 CDS RPA4581 NC_005296.1 5162843 5164102 D hypothetical protein 5162843..5164102 Rhodopseudomonas palustris CGA009 2691887 NP_949916.1 CDS galE2 NC_005296.1 5164133 5165116 D UDP-galactose 4-epimerase 5164133..5165116 Rhodopseudomonas palustris CGA009 2689071 NP_949917.1 CDS RPA4583 NC_005296.1 5165344 5166261 D UDP-N-acetyl-D-mannosamine transferase 5165344..5166261 Rhodopseudomonas palustris CGA009 2691778 NP_949918.1 CDS RPA4584 NC_005296.1 5166277 5167413 R endoglucanase complement(5166277..5167413) Rhodopseudomonas palustris CGA009 2691877 NP_949919.1 CDS RPA4585 NC_005296.1 5167429 5169585 R lipopolysaccharide biosynthesis protein complement(5167429..5169585) Rhodopseudomonas palustris CGA009 2691880 NP_949920.1 CDS RPA4586 NC_005296.1 5169889 5171088 D group 2 glycosyl transferase 5169889..5171088 Rhodopseudomonas palustris CGA009 2691868 NP_949921.1 CDS RPA4587 NC_005296.1 5171110 5172639 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 5171110..5172639 Rhodopseudomonas palustris CGA009 2691875 NP_949922.1 CDS RPA4588 NC_005296.1 5172657 5173022 R hypothetical protein complement(5172657..5173022) Rhodopseudomonas palustris CGA009 2691874 NP_949923.1 CDS RPA4589 NC_005296.1 5173165 5174634 D O-antigen export protein 5173165..5174634 Rhodopseudomonas palustris CGA009 2691797 NP_949924.1 CDS RPA4590 NC_005296.1 5174703 5175704 R catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase complement(5174703..5175704) Rhodopseudomonas palustris CGA009 2691252 NP_949925.1 CDS metY NC_005296.1 5175717 5177021 R homocysteine synthase complement(5175717..5177021) Rhodopseudomonas palustris CGA009 2690825 NP_949926.1 CDS RPA4592 NC_005296.1 5177281 5179104 D activates fatty acids by binding to coenzyme A; may be involved in acyclic terpene utilization; long-chain-acyl-CoA synthetase 5177281..5179104 Rhodopseudomonas palustris CGA009 2690826 NP_949927.1 CDS RPA4593 NC_005296.1 5179104 5179988 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; aminotransferase 5179104..5179988 Rhodopseudomonas palustris CGA009 2691780 NP_949928.1 CDS RPA4594 NC_005296.1 5180009 5180893 R hypothetical protein complement(5180009..5180893) Rhodopseudomonas palustris CGA009 2691774 NP_949929.1 CDS RPA4595 NC_005296.1 5181226 5182605 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 5181226..5182605 Rhodopseudomonas palustris CGA009 2691768 NP_949930.1 CDS fabG5 NC_005296.1 5182598 5183329 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 3-oxoacyl-ACP reductase 5182598..5183329 Rhodopseudomonas palustris CGA009 2691771 NP_949931.1 CDS RPA4597 NC_005296.1 5183551 5184492 R hypothetical protein complement(5183551..5184492) Rhodopseudomonas palustris CGA009 2690992 NP_949932.1 CDS RPA4598 NC_005296.1 5184527 5185756 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl-CoA dehydrogenase complement(5184527..5185756) Rhodopseudomonas palustris CGA009 2690987 NP_949933.1 CDS RPA4599 NC_005296.1 5186123 5186395 D hypothetical protein 5186123..5186395 Rhodopseudomonas palustris CGA009 2690983 NP_949934.1 CDS RPA4600 NC_005296.1 5186469 5186924 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 5186469..5186924 Rhodopseudomonas palustris CGA009 2690964 NP_949935.1 CDS RPA4601 NC_005296.1 5187101 5187688 D hypothetical protein 5187101..5187688 Rhodopseudomonas palustris CGA009 2692382 NP_949936.1 CDS fixX NC_005296.1 5188040 5188336 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ferredoxin like protein fixX complement(5188040..5188336) Rhodopseudomonas palustris CGA009 2692374 NP_949937.1 CDS fixC NC_005296.1 5188370 5189677 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; electron-transferring-flavoprotein dehydrogenase complement(5188370..5189677) Rhodopseudomonas palustris CGA009 2692368 NP_949938.1 CDS fixB NC_005296.1 5189690 5190796 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; electron transfer flavoprotein subunit beta complement(5189690..5190796) Rhodopseudomonas palustris CGA009 2688752 NP_949939.1 CDS fixA NC_005296.1 5190821 5191666 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; electron transfer flavoprotein subunit beta complement(5190821..5191666) Rhodopseudomonas palustris CGA009 2689134 NP_949940.1 CDS nifW NC_005296.1 5191999 5192349 R associates with NifD and may protect the nitrogenase Fe-Mo protein from oxidative damage; nitrogenase stabilizing/protective protein complement(5191999..5192349) Rhodopseudomonas palustris CGA009 2692523 NP_949941.1 CDS nifV NC_005296.1 5192378 5193571 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; homocitrate synthase complement(5192378..5193571) Rhodopseudomonas palustris CGA009 2692526 NP_949942.1 CDS nifS2 NC_005296.1 5193564 5194796 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; class V aminotransferase complement(5193564..5194796) Rhodopseudomonas palustris CGA009 2692360 NP_949943.1 CDS nifU NC_005296.1 5194793 5195779 R NifU protein complement(5194793..5195779) Rhodopseudomonas palustris CGA009 2692358 NP_949944.1 CDS RPA4610 NC_005296.1 5195807 5196127 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; HesB/YadR/YfhF complement(5195807..5196127) Rhodopseudomonas palustris CGA009 2690883 NP_949945.1 CDS nifQ NC_005296.1 5196535 5197245 R nitrogen fixation protein NifQ complement(5196535..5197245) Rhodopseudomonas palustris CGA009 2692349 NP_949946.1 CDS fdxB NC_005296.1 5197263 5197574 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 4Fe-4S ferredoxin complement(5197263..5197574) Rhodopseudomonas palustris CGA009 2688792 NP_949947.1 CDS RPA4613 NC_005296.1 5197635 5197841 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(5197635..5197841) Rhodopseudomonas palustris CGA009 2691851 NP_949948.1 CDS RPA4614 NC_005296.1 5197860 5198324 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(5197860..5198324) Rhodopseudomonas palustris CGA009 2691856 NP_949949.1 CDS nifX NC_005296.1 5198326 5198724 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; dinitrogenase iron-molybdenum cofactor biosynthesis complement(5198326..5198724) Rhodopseudomonas palustris CGA009 2689149 NP_949950.1 CDS nifN NC_005296.1 5198780 5200153 R functions with NifE to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifN complement(5198780..5200153) Rhodopseudomonas palustris CGA009 2692347 NP_949951.1 CDS nifE NC_005296.1 5200164 5201627 R functions with NifN to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifE complement(5200164..5201627) Rhodopseudomonas palustris CGA009 2692345 NP_949952.1 CDS nifK NC_005296.1 5201667 5203226 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; nitrogenase molybdenum-iron protein subunit beta complement(5201667..5203226) Rhodopseudomonas palustris CGA009 2692339 NP_949953.1 CDS nifD NC_005296.1 5203315 5204778 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; nitrogenase molybdenum-iron protein subunit alpha complement(5203315..5204778) Rhodopseudomonas palustris CGA009 2690565 NP_949954.1 CDS nifH NC_005296.1 5204850 5205746 R nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis; nitrogenase reductase complement(5204850..5205746) Rhodopseudomonas palustris CGA009 2690566 NP_949955.1 CDS RPA4621 NC_005296.1 5206323 5207225 R hypothetical protein complement(5206323..5207225) Rhodopseudomonas palustris CGA009 2690890 NP_949956.1 CDS RPA4622 NC_005296.1 5207241 5207519 R hypothetical protein complement(5207241..5207519) Rhodopseudomonas palustris CGA009 2690563 NP_949957.1 CDS fixU NC_005296.1 5207522 5207722 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(5207522..5207722) Rhodopseudomonas palustris CGA009 2690552 NP_949958.1 CDS RPA4624 NC_005296.1 5207760 5207993 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(5207760..5207993) Rhodopseudomonas palustris CGA009 2690546 NP_949959.1 CDS nifZ NC_005296.1 5207993 5208292 R nitrogen fixation protein NifZ complement(5207993..5208292) Rhodopseudomonas palustris CGA009 2690543 NP_949960.1 CDS RPA4626 NC_005296.1 5208289 5209074 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(5208289..5209074) Rhodopseudomonas palustris CGA009 2690542 NP_949961.1 CDS RPA4627 NC_005296.1 5209064 5209603 R hypothetical protein complement(5209064..5209603) Rhodopseudomonas palustris CGA009 2689844 NP_949962.1 CDS hesB NC_005296.1 5209607 5209963 R HesB/YadR/YfhF complement(5209607..5209963) Rhodopseudomonas palustris CGA009 2690541 NP_949963.1 CDS ferN NC_005296.1 5209974 5210195 R 4Fe-4S ferredoxin complement(5209974..5210195) Rhodopseudomonas palustris CGA009 2690970 NP_949964.1 CDS nifB NC_005296.1 5210219 5211775 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; nitrogenase cofactor biosynthesis protein NifB complement(5210219..5211775) Rhodopseudomonas palustris CGA009 2690976 NP_949965.1 CDS fer1 NC_005296.1 5211934 5212128 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 4Fe-4S ferredoxin complement(5211934..5212128) Rhodopseudomonas palustris CGA009 2690636 NP_949966.1 CDS nifA NC_005296.1 5212401 5214155 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; transcriptional regulator NifA complement(5212401..5214155) Rhodopseudomonas palustris CGA009 2690641 NP_949967.1 CDS fixR2 NC_005296.1 5214468 5215364 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; short-chain dehydrogenase complement(5214468..5215364) Rhodopseudomonas palustris CGA009 2692338 NP_949968.1 CDS RPA4634 NC_005296.1 5215621 5216475 D hypothetical protein 5215621..5216475 Rhodopseudomonas palustris CGA009 2689165 NP_949969.1 CDS feoB NC_005296.1 5216625 5218511 R ferrous iron transport protein B complement(5216625..5218511) Rhodopseudomonas palustris CGA009 2691243 NP_949970.1 CDS RPA4636 NC_005296.1 5218549 5218839 R FeoA family protein complement(5218549..5218839) Rhodopseudomonas palustris CGA009 2691234 NP_949971.1 CDS RPA4637 NC_005296.1 5219202 5219363 D hypothetical protein 5219202..5219363 Rhodopseudomonas palustris CGA009 2691231 NP_949972.1 CDS RPA4638 NC_005296.1 5219533 5221230 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methyl-accepting chemotaxis receptor/sensory transducer complement(5219533..5221230) Rhodopseudomonas palustris CGA009 2691211 NP_949973.1 CDS RPA4639 NC_005296.1 5221609 5223303 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methyl-accepting chemotaxis receptor/sensory transducer complement(5221609..5223303) Rhodopseudomonas palustris CGA009 2691200 NP_949974.1 CDS RPA4640 NC_005296.1 5223509 5223895 R hypothetical protein complement(5223509..5223895) Rhodopseudomonas palustris CGA009 2692540 NP_949975.1 CDS cbbM NC_005296.1 5224192 5225577 R catalyzes the carboxylation of D-ribulose 1,5-bisphosphate in carbon dioxide fixation; ribulose bisphosphate carboxylase complement(5224192..5225577) Rhodopseudomonas palustris CGA009 2692140 NP_949976.1 CDS cbbA NC_005296.1 5225636 5226721 R class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase complement(5225636..5226721) Rhodopseudomonas palustris CGA009 2692136 NP_949977.1 CDS cbbT1 NC_005296.1 5226783 5228750 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(5226783..5228750) Rhodopseudomonas palustris CGA009 2692130 NP_949978.1 CDS cbbP NC_005296.1 5228833 5229708 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; phosphoribulokinase complement(5228833..5229708) Rhodopseudomonas palustris CGA009 2692128 NP_949979.1 CDS cbbF NC_005296.1 5229746 5230777 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(5229746..5230777) Rhodopseudomonas palustris CGA009 2689950 NP_949980.1 CDS RPA4646 NC_005296.1 5231249 5231998 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; carboxylesterase 5231249..5231998 Rhodopseudomonas palustris CGA009 2692096 NP_949981.1 CDS kdgR NC_005296.1 5232127 5232882 R IclR family transcriptional regulator complement(5232127..5232882) Rhodopseudomonas palustris CGA009 2692103 NP_949982.1 CDS RPA4648 NC_005296.1 5232963 5234051 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter complement(5232963..5234051) Rhodopseudomonas palustris CGA009 2692100 NP_949983.1 CDS RPA4649 NC_005296.1 5234085 5235878 R ABC transporter permease complement(5234085..5235878) Rhodopseudomonas palustris CGA009 2692081 NP_949984.1 CDS potA NC_005296.1 5235875 5237020 R spermidine/putrescine transport system ATP-binding protein complement(5235875..5237020) Rhodopseudomonas palustris CGA009 2692074 NP_949985.1 CDS RPA4651 NC_005296.1 5237135 5238082 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; glutaconate CoA transferase subunit A 5237135..5238082 Rhodopseudomonas palustris CGA009 2692070 NP_949986.1 CDS RPA4652 NC_005296.1 5238082 5238849 D CoA transferase subunit B 5238082..5238849 Rhodopseudomonas palustris CGA009 2692552 NP_949987.1 CDS bisC NC_005296.1 5238882 5241191 D biotin sulfoxide reductase 5238882..5241191 Rhodopseudomonas palustris CGA009 2692047 NP_949988.1 CDS RPA4654 NC_005296.1 5241208 5241777 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 5241208..5241777 Rhodopseudomonas palustris CGA009 2692055 NP_949989.1 CDS fucA NC_005296.1 5241859 5242545 D L-fuculose phosphate aldolase 5241859..5242545 Rhodopseudomonas palustris CGA009 2692029 NP_949990.1 CDS RPA4656 NC_005296.1 5242576 5243535 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; sugar kinase 5242576..5243535 Rhodopseudomonas palustris CGA009 2692014 NP_949991.1 CDS kduD NC_005296.1 5243582 5244328 D 2-keto-3-deoxygluconate dehydrogenase 5243582..5244328 Rhodopseudomonas palustris CGA009 2692005 NP_949992.1 CDS RPA4658 NC_005296.1 5244361 5245347 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; zinc-binding dehydrogenase 5244361..5245347 Rhodopseudomonas palustris CGA009 2692006 NP_949993.1 CDS RPA4659 NC_005296.1 5245424 5245927 D acetyltransferase 5245424..5245927 Rhodopseudomonas palustris CGA009 2691990 NP_949994.1 CDS otsA NC_005296.1 5252629 5254110 R alpha,alpha-trehalose-phosphate synthase complement(5252629..5254110) Rhodopseudomonas palustris CGA009 2690001 NP_949995.1 CDS otsB NC_005296.1 5254267 5255064 R trehalose-6-phosphate phophatase complement(5254267..5255064) Rhodopseudomonas palustris CGA009 2689971 NP_949996.1 CDS RPA4662 NC_005296.1 5255061 5256548 R major facilitator transporter complement(5255061..5256548) Rhodopseudomonas palustris CGA009 2690706 NP_949997.1 CDS RPA4663 NC_005296.1 5256729 5258771 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methyl-accepting chemotaxis sensory transducer complement(5256729..5258771) Rhodopseudomonas palustris CGA009 2689848 NP_949998.1 CDS RPA4664 NC_005296.1 5258890 5259636 R cupin complement(5258890..5259636) Rhodopseudomonas palustris CGA009 2689709 NP_949999.1 CDS leuA NC_005296.1 5259974 5261635 D 2-isopropylmalate synthase 5259974..5261635 Rhodopseudomonas palustris CGA009 2689573 NP_950000.1 CDS coxS NC_005296.1 5261956 5262426 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; carbon-monoxide dehydrogenase small subunit 5261956..5262426 Rhodopseudomonas palustris CGA009 2689569 NP_950001.1 CDS coxL NC_005296.1 5262537 5264891 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; carbon-monoxide dehydrogenase large subunit 5262537..5264891 Rhodopseudomonas palustris CGA009 2689558 NP_950002.1 CDS coxM NC_005296.1 5265000 5265800 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; carbon monoxide dehydrogenase subunit C 5265000..5265800 Rhodopseudomonas palustris CGA009 2689538 NP_950003.1 CDS RPA4669 NC_005296.1 5265985 5267100 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; L-carnitine dehydratase/bile acid-inducible protein F 5265985..5267100 Rhodopseudomonas palustris CGA009 2692304 NP_950004.1 CDS fahA NC_005296.1 5267227 5268492 R fumarylacetoacetase complement(5267227..5268492) Rhodopseudomonas palustris CGA009 2692309 NP_950005.1 CDS maiA NC_005296.1 5268784 5269440 R maleylacetoacetate isomerase complement(5268784..5269440) Rhodopseudomonas palustris CGA009 2692306 NP_950006.1 CDS hmgA NC_005296.1 5269437 5270783 R An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase complement(5269437..5270783) Rhodopseudomonas palustris CGA009 2692302 NP_950007.1 CDS cphA1 NC_005296.1 5270840 5271793 R beta lactamase complement(5270840..5271793) Rhodopseudomonas palustris CGA009 2691000 NP_950008.1 CDS RPA4674 NC_005296.1 5272020 5272238 R hypothetical protein complement(5272020..5272238) Rhodopseudomonas palustris CGA009 2693076 NP_950009.1 CDS RPA4675 NC_005296.1 5272528 5274135 R FAD-dependent oxidoreductase complement(5272528..5274135) Rhodopseudomonas palustris CGA009 2693081 NP_950010.1 CDS RPA4676 NC_005296.1 5274265 5274762 D MarR family transcriptional regulator 5274265..5274762 Rhodopseudomonas palustris CGA009 2689554 NP_950011.1 CDS RPA4677 NC_005296.1 5274933 5276363 D TPR repeat-containing caspace 5274933..5276363 Rhodopseudomonas palustris CGA009 2692293 NP_950012.1 CDS RPA4678 NC_005296.1 5276468 5277118 D outer membrane protein OprF 5276468..5277118 Rhodopseudomonas palustris CGA009 2692292 NP_950013.1 CDS RPA4679 NC_005296.1 5277277 5278164 D component of multidrug efflux system 5277277..5278164 Rhodopseudomonas palustris CGA009 2693060 NP_950014.1 CDS RPA4680 NC_005296.1 5278164 5281316 D efflux transporter 5278164..5281316 Rhodopseudomonas palustris CGA009 2692285 NP_950015.1 CDS RPA4681 NC_005296.1 5281358 5283175 D AsmA family protein 5281358..5283175 Rhodopseudomonas palustris CGA009 2692272 NP_950016.1 CDS RPA4682 NC_005296.1 5283182 5284153 D RND efflux membrane fusion protein 5283182..5284153 Rhodopseudomonas palustris CGA009 2693061 NP_950017.1 CDS RPA4683 NC_005296.1 5284215 5284469 R hypothetical protein complement(5284215..5284469) Rhodopseudomonas palustris CGA009 2691896 NP_950018.1 CDS RPA4684 NC_005296.1 5285027 5286706 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methyl-accepting chemotaxis receptor/sensory transducer 5285027..5286706 Rhodopseudomonas palustris CGA009 2689777 NP_950019.1 CDS lysK NC_005296.1 5286747 5288384 R class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase complement(5286747..5288384) Rhodopseudomonas palustris CGA009 2693035 NP_950020.1 CDS RPA4686 NC_005296.1 5288418 5289173 R family 3 extracellular solute-binding protein complement(5288418..5289173) Rhodopseudomonas palustris CGA009 2690739 NP_950021.1 CDS RPA4687 NC_005296.1 5289415 5291466 D glycosyl transferase family protein 5289415..5291466 Rhodopseudomonas palustris CGA009 2690634 NP_950022.1 CDS RPA4688 NC_005296.1 5291468 5292067 R electron transport protein SCO1/SenC complement(5291468..5292067) Rhodopseudomonas palustris CGA009 2691724 NP_950023.1 CDS RPA4689 NC_005296.1 5292243 5292701 R hypothetical protein complement(5292243..5292701) Rhodopseudomonas palustris CGA009 2692239 NP_950024.1 CDS RPA4690 NC_005296.1 5292915 5293253 D hypothetical protein 5292915..5293253 Rhodopseudomonas palustris CGA009 2692959 NP_950025.1 CDS RPA4691 NC_005296.1 5293431 5295401 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; methyl-accepting chemotaxis receptor/sensory transducer 5293431..5295401 Rhodopseudomonas palustris CGA009 2692958 NP_950026.1 CDS RPA4692 NC_005296.1 5295550 5295927 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 5295550..5295927 Rhodopseudomonas palustris CGA009 2692948 NP_950027.1 CDS RPA4693 NC_005296.1 5296118 5297281 R FMN oxidoreductase complement(5296118..5297281) Rhodopseudomonas palustris CGA009 2692941 NP_950028.1 CDS RPA4694 NC_005296.1 5297448 5298446 D hypothetical protein 5297448..5298446 Rhodopseudomonas palustris CGA009 2690517 NP_950029.1 CDS ligR NC_005296.1 5298468 5299370 D LysR family transcriptional regulator 5298468..5299370 Rhodopseudomonas palustris CGA009 2690507 NP_950030.1 CDS FldA NC_005296.1 5299497 5300615 D hypothetical protein 5299497..5300615 Rhodopseudomonas palustris CGA009 2692934 NP_950031.1 CDS ligJ NC_005296.1 5300785 5301813 D 4-oxalomesaconate hydratase 5300785..5301813 Rhodopseudomonas palustris CGA009 2691710 NP_950032.1 CDS FldZ NC_005296.1 5301816 5302511 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 5301816..5302511 Rhodopseudomonas palustris CGA009 2693024 NP_950033.1 CDS FldX NC_005296.1 5302511 5303440 D dehydrogenase 5302511..5303440 Rhodopseudomonas palustris CGA009 2692244 NP_950034.1 CDS ligI NC_005296.1 5303694 5304608 D 2-pyrone-4,6-dicarboxylic acid hydrolase 5303694..5304608 Rhodopseudomonas palustris CGA009 2690909 NP_950035.1 CDS ligA NC_005296.1 5304715 5305104 D extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit alpha 5304715..5305104 Rhodopseudomonas palustris CGA009 2690913 NP_950036.1 CDS ligB NC_005296.1 5305104 5305958 D extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit beta 5305104..5305958 Rhodopseudomonas palustris CGA009 2690473 NP_950037.1 CDS ligC NC_005296.1 5305960 5306919 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase 5305960..5306919 Rhodopseudomonas palustris CGA009 2691708 NP_950038.1 CDS RPA4704 NC_005296.1 5307112 5307510 D hypothetical protein 5307112..5307510 Rhodopseudomonas palustris CGA009 2692226 NP_950039.1 CDS hisE2 NC_005296.1 5307616 5308011 D phosphoribosyl-ATP pyrophosphohydrolase 5307616..5308011 Rhodopseudomonas palustris CGA009 2692212 NP_950040.1 CDS RPA4706 NC_005296.1 5308113 5308694 D DedA family protein 5308113..5308694 Rhodopseudomonas palustris CGA009 2690460 NP_950041.1 CDS RPA4707 NC_005296.1 5308747 5309424 D hypothetical protein 5308747..5309424 Rhodopseudomonas palustris CGA009 2692218 NP_950042.1 CDS RPA4708 NC_005296.1 5309570 5310538 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; 2-nitropropane dioxygenase 5309570..5310538 Rhodopseudomonas palustris CGA009 2690823 NP_950043.1 CDS RPA4709 NC_005296.1 5310696 5311469 D hypothetical protein 5310696..5311469 Rhodopseudomonas palustris CGA009 2692598 NP_950044.1 CDS RPA4710 NC_005296.1 5311592 5311912 D hypothetical protein 5311592..5311912 Rhodopseudomonas palustris CGA009 2692181 NP_950045.1 CDS RPA4711 NC_005296.1 5312066 5312764 D hypothetical protein 5312066..5312764 Rhodopseudomonas palustris CGA009 2691808 NP_950046.1 CDS RPA4712 NC_005296.1 5312818 5314566 R hypothetical protein complement(5312818..5314566) Rhodopseudomonas palustris CGA009 2691836 NP_950047.1 CDS RPA4713 NC_005296.1 5314811 5315782 D hypothetical protein 5314811..5315782 Rhodopseudomonas palustris CGA009 2692170 NP_950048.1 CDS RPA4714 NC_005296.1 5315755 5316345 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(5315755..5316345) Rhodopseudomonas palustris CGA009 2690437 NP_950049.1 CDS modC NC_005296.1 5316493 5317614 R molybdate ABC transporter ATP-binding protein complement(5316493..5317614) Rhodopseudomonas palustris CGA009 2690415 NP_950050.1 CDS modB NC_005296.1 5317611 5318297 R molybdate ABC transporter permease complement(5317611..5318297) Rhodopseudomonas palustris CGA009 2690414 NP_950051.1 CDS modA NC_005296.1 5318535 5319308 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; molybdenum ABC transporter periplasmic molybdate-binding protein complement(5318535..5319308) Rhodopseudomonas palustris CGA009 2690410 NP_950052.1 CDS modE NC_005296.1 5319453 5320244 R ModE family transcriptional regulator complement(5319453..5320244) Rhodopseudomonas palustris CGA009 2690404 NP_950053.1 CDS RPA4719 NC_005296.1 5320343 5320552 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; molybdo-pterin binding protein 5320343..5320552 Rhodopseudomonas palustris CGA009 2691439 NP_950054.1 CDS RPA4720 NC_005296.1 5320597 5321166 R hypothetical protein complement(5320597..5321166) Rhodopseudomonas palustris CGA009 2688959 NP_950055.1 CDS RPA4721 NC_005296.1 5321423 5326636 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; pyruvate-flavodoxin oxidoreductase 5321423..5326636 Rhodopseudomonas palustris CGA009 2691590 NP_950056.1 CDS RPA4722 NC_005296.1 5326633 5329467 D undetermined function; bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase 5326633..5329467 Rhodopseudomonas palustris CGA009 2691571 NP_950057.1 CDS polA NC_005296.1 5330466 5333543 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 5330466..5333543 Rhodopseudomonas palustris CGA009 2692164 NP_950058.1 CDS pyrE NC_005296.1 5333861 5334424 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 5333861..5334424 Rhodopseudomonas palustris CGA009 2692935 NP_950059.1 CDS RPA4725 NC_005296.1 5334527 5335330 D hypothetical protein 5334527..5335330 Rhodopseudomonas palustris CGA009 2692151 NP_950060.1 CDS RPA4726 NC_005296.1 5335598 5336029 R hypothetical protein complement(5335598..5336029) Rhodopseudomonas palustris CGA009 2692904 NP_950061.1 CDS glgA2 NC_005296.1 5336312 5338858 D glycogen/starch/alpha-glucan phosphorylase 5336312..5338858 Rhodopseudomonas palustris CGA009 2692896 NP_950062.1 CDS RPA4728 NC_005296.1 5339139 5339972 D hypothetical protein 5339139..5339972 Rhodopseudomonas palustris CGA009 2692895 NP_950063.1 CDS rocF NC_005296.1 5340028 5341011 D arginase 5340028..5341011 Rhodopseudomonas palustris CGA009 2692890 NP_950064.1 CDS RPA4730 NC_005296.1 5341259 5342878 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter ATPase 5341259..5342878 Rhodopseudomonas palustris CGA009 2692139 NP_950065.1 CDS RPA4731 NC_005296.1 5343026 5344219 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(5343026..5344219) Rhodopseudomonas palustris CGA009 2692147 NP_950066.1 CDS RPA4732 NC_005296.1 5344380 5344958 D ChaC-like protein 5344380..5344958 Rhodopseudomonas palustris CGA009 2690401 NP_950067.1 CDS plsC NC_005296.1 5344975 5345784 R phospholipid/glycerol acyltransferase complement(5344975..5345784) Rhodopseudomonas palustris CGA009 2690390 NP_950068.1 CDS RPA4734 NC_005296.1 5345798 5346565 R hypothetical protein complement(5345798..5346565) Rhodopseudomonas palustris CGA009 2690362 NP_950069.1 CDS RPA4735 NC_005296.1 5346668 5347444 R hypothetical protein complement(5346668..5347444) Rhodopseudomonas palustris CGA009 2690346 NP_950070.1 CDS ftsE NC_005296.1 5347658 5348317 R cell division ATP-binding protein FtsE complement(5347658..5348317) Rhodopseudomonas palustris CGA009 2692880 NP_950071.1 CDS RPA4737 NC_005296.1 5348461 5349357 D Zinc finger/thioredoxin 5348461..5349357 Rhodopseudomonas palustris CGA009 2692874 NP_950072.1 CDS RPA4738 NC_005296.1 5349417 5349797 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; chemotaxis protein CheY 5349417..5349797 Rhodopseudomonas palustris CGA009 2692850 NP_950073.1 CDS RPA4739 NC_005296.1 5349996 5352557 R hypothetical protein complement(5349996..5352557) Rhodopseudomonas palustris CGA009 2692844 NP_950074.1 CDS pcaC NC_005296.1 5352717 5353097 D 4-carboxymuconolactone decarboxylase 5352717..5353097 Rhodopseudomonas palustris CGA009 2692820 NP_950075.1 CDS lysA NC_005296.1 5353332 5354597 R diaminopimelate decarboxylase complement(5353332..5354597) Rhodopseudomonas palustris CGA009 2692801 NP_950076.1 CDS RPA4742 NC_005296.1 5354606 5354887 R hypothetical protein complement(5354606..5354887) Rhodopseudomonas palustris CGA009 2692800 NP_950077.1 CDS argH NC_005296.1 5354942 5356339 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(5354942..5356339) Rhodopseudomonas palustris CGA009 2691182 NP_950078.1 CDS RPA4744 NC_005296.1 5356435 5357121 D thioredoxin-like protein 5356435..5357121 Rhodopseudomonas palustris CGA009 2691179 NP_950079.1 CDS RPA4745 NC_005296.1 5357277 5357507 R hypothetical protein complement(5357277..5357507) Rhodopseudomonas palustris CGA009 2689750 NP_950080.1 CDS RPA4746 NC_005296.1 5357574 5358392 R NAD(P)H quinone reductase complement(5357574..5358392) Rhodopseudomonas palustris CGA009 2690345 NP_950081.1 CDS RPA4747 NC_005296.1 5358469 5359383 D LysR family transcriptional regulator 5358469..5359383 Rhodopseudomonas palustris CGA009 2690339 NP_950082.1 CDS hbdA NC_005296.1 5359398 5360279 R converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase complement(5359398..5360279) Rhodopseudomonas palustris CGA009 2690340 NP_950083.1 CDS etfA NC_005296.1 5360445 5361389 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; electron transfer flavoprotein subunit alpha complement(5360445..5361389) Rhodopseudomonas palustris CGA009 2690335 NP_950084.1 CDS etfB NC_005296.1 5361389 5362138 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; electron transfer flavoprotein subunit beta complement(5361389..5362138) Rhodopseudomonas palustris CGA009 2690698 NP_950085.1 CDS RPA4751 NC_005296.1 5362244 5362816 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein complement(5362244..5362816) Rhodopseudomonas palustris CGA009 2690784 NP_950086.1 CDS rbn1 NC_005296.1 5363202 5364095 D ribonuclease BN 5363202..5364095 Rhodopseudomonas palustris CGA009 2691111 NP_950087.1 CDS RPA4753 NC_005296.1 5364022 5365239 R histidine kinase with a response regulator receiver domain complement(5364022..5365239) Rhodopseudomonas palustris CGA009 2689912 NP_950088.2 CDS RPA4754 NC_005296.1 5365339 5366220 R this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase complement(5365339..5366220) Rhodopseudomonas palustris CGA009 2690773 NP_950089.1 CDS RPA4755 NC_005296.1 5366291 5367061 D HhH-GPD 5366291..5367061 Rhodopseudomonas palustris CGA009 2690775 NP_950090.1 CDS RPA4756 NC_005296.1 5367193 5367639 R Inhibits transcription at high concentrations of nickel; nickel responsive regulator complement(5367193..5367639) Rhodopseudomonas palustris CGA009 2689886 NP_950091.1 CDS RPA4757 NC_005296.1 5367760 5369976 D outer membrane receptor for iron transport 5367760..5369976 Rhodopseudomonas palustris CGA009 2689725 NP_950092.1 CDS RPA4758 NC_005296.1 5370412 5370765 D hypothetical protein 5370412..5370765 Rhodopseudomonas palustris CGA009 2690312 NP_950093.1 CDS RPA4759 NC_005296.1 5370812 5372428 R glycosyl hydrolase family protein complement(5370812..5372428) Rhodopseudomonas palustris CGA009 2692629 NP_950094.1 CDS RPA4760 NC_005296.1 5372942 5373475 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; hypothetical protein 5372942..5373475 Rhodopseudomonas palustris CGA009 2690301 NP_950095.1 CDS RPA4761 NC_005296.1 5373755 5374279 D hypothetical protein 5373755..5374279 Rhodopseudomonas palustris CGA009 2690287 NP_950096.1 CDS ogt2 NC_005296.1 5374977 5375570 D methylated-DNA--protein-cysteine methyltransferase 5374977..5375570 Rhodopseudomonas palustris CGA009 2690282 NP_950097.1 CDS RPA4763 NC_005296.1 5375567 5377003 R cation efflux pump complement(5375567..5377003) Rhodopseudomonas palustris CGA009 2691926 NP_950098.1 CDS RPA4764 NC_005296.1 5377514 5379493 D metallo-phosphoesterase:Tat pathway signal 5377514..5379493 Rhodopseudomonas palustris CGA009 2690260 NP_950099.1 CDS RPA4765 NC_005296.1 5379553 5380686 R Catalyzes the deamination of dCTP to form dUTP; 2'-deoxycytidine 5'-triphosphate deaminase complement(5379553..5380686) Rhodopseudomonas palustris CGA009 2690248 NP_950100.1 CDS metZ NC_005296.1 5380923 5382134 D catalyzes the conversion of O-succinylhomoserine and sulfide to homocysteine; second step in methionine biosynthesis; O-succinylhomoserine sulfhydrylase 5380923..5382134 Rhodopseudomonas palustris CGA009 2690242 NP_950101.1 CDS RPA4767 NC_005296.1 5382282 5383250 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; GDSL family lipase complement(5382282..5383250) Rhodopseudomonas palustris CGA009 2690227 NP_950102.1 CDS RPA4768 NC_005296.1 5383250 5384029 R hypothetical protein complement(5383250..5384029) Rhodopseudomonas palustris CGA009 2690223 NP_950103.1 CDS opgC NC_005296.1 5384026 5385291 R OpgC protein complement(5384026..5385291) Rhodopseudomonas palustris CGA009 2692645 NP_950104.1 CDS apaG NC_005296.1 5385542 5385934 D protein associated with Co2+ and Mg2+ efflux; ApaG protein 5385542..5385934 Rhodopseudomonas palustris CGA009 2690183 NP_950105.1 CDS hslO NC_005296.1 5386010 5387011 R becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; heat shock protein 33 complement(5386010..5387011) Rhodopseudomonas palustris CGA009 2690188 NP_950106.1 CDS argF NC_005296.1 5387283 5388215 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(5387283..5388215) Rhodopseudomonas palustris CGA009 2690176 NP_950107.2 CDS argD NC_005296.1 5388212 5389423 R DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine transaminase protein complement(5388212..5389423) Rhodopseudomonas palustris CGA009 2690169 NP_950108.1 CDS RPA4774 NC_005296.1 5389767 5390408 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; GcrA cell cycle regulator 5389767..5390408 Rhodopseudomonas palustris CGA009 2690172 NP_950109.1 CDS phoB NC_005296.1 5390650 5391363 R winged helix family two component transcriptional regulator complement(5390650..5391363) Rhodopseudomonas palustris CGA009 2690152 NP_950110.1 CDS phoU NC_005296.1 5391441 5392157 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; phosphate uptake regulator PhoU complement(5391441..5392157) Rhodopseudomonas palustris CGA009 2690139 NP_950111.1 CDS pstB NC_005296.1 5392181 5393002 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(5392181..5393002) Rhodopseudomonas palustris CGA009 2690127 NP_950112.1 CDS pstA NC_005296.1 5392999 5393862 R phosphate ABC transporter permease complement(5392999..5393862) Rhodopseudomonas palustris CGA009 2690119 NP_950113.1 CDS pstC NC_005296.1 5393864 5394865 R phosphate ABC transporter permease complement(5393864..5394865) Rhodopseudomonas palustris CGA009 2690106 NP_950114.1 CDS pstS1 NC_005296.1 5395079 5396089 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; periplasmic phosphate binding protein complement(5395079..5396089) Rhodopseudomonas palustris CGA009 2690085 NP_950115.1 CDS phoR NC_005296.1 5396238 5397587 R two component sensor histidine kinase phoR complement(5396238..5397587) Rhodopseudomonas palustris CGA009 2690083 NP_950116.1 CDS RPA4782 NC_005296.1 5397591 5398625 R hypothetical protein complement(5397591..5398625) Rhodopseudomonas palustris CGA009 2689840 NP_950117.1 CDS RPA4783 NC_005296.1 5398873 5399169 R hypothetical protein complement(5398873..5399169) Rhodopseudomonas palustris CGA009 2691704 NP_950118.1 CDS RPA4784 NC_005296.1 5399173 5400567 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; OmpA/MotB domain-containing protein complement(5399173..5400567) Rhodopseudomonas palustris CGA009 2691098 NP_950119.1 CDS RPA4785 NC_005296.1 5400723 5401781 D polysaccharide deacetylase 5400723..5401781 Rhodopseudomonas palustris CGA009 2691079 NP_950120.1 CDS rhlG NC_005296.1 5401842 5402648 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; short-chain dehydrogenase/reductase SDR 5401842..5402648 Rhodopseudomonas palustris CGA009 2691068 NP_950121.1 CDS RPA4787 NC_005296.1 5402871 5403788 D consists of N-terminal helix-turn-helix domain and C-terminal shikimate kinase-like domain which may bind benzoyl-CoA; controls inducible expression of the bzd catabolic operon that is involved in the anaerobic catabolism of benzoate; anaerobic benzoate catabolism transcriptional regulator 5402871..5403788 Rhodopseudomonas palustris CGA009 2691064 NP_950122.1 CDS ugpB2 NC_005296.1 5403795 5405123 R family 1 extracellular solute-binding protein complement(5403795..5405123) Rhodopseudomonas palustris CGA009 2692690 NP_950123.1 CDS RPA4789 NC_005296.1 5405300 5407411 D sensor signal transduction histidine kinase 5405300..5407411 Rhodopseudomonas palustris CGA009 2690061 NP_950124.1 CDS RPA4790 NC_005296.1 5407468 5409120 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; response regulator receiver sensor signal transduction histidine kinase 5407468..5409120 Rhodopseudomonas palustris CGA009 2690939 NP_950125.1 CDS RPA4791 NC_005296.1 5409117 5409857 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; two-component transcriptional regulator 5409117..5409857 Rhodopseudomonas palustris CGA009 2692703 NP_950126.1 CDS RPA4792 NC_005296.1 5410062 5410673 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 5410062..5410673 Rhodopseudomonas palustris CGA009 2691956 NP_950127.1 CDS QxtA NC_005296.1 5411181 5412587 D cytochrome bd ubiquinol oxidase subunit I 5411181..5412587 Rhodopseudomonas palustris CGA009 2688751 NP_950128.1 CDS qxtB NC_005296.1 5412601 5413611 D cytochrome d ubiquinol oxidase subunit II 5412601..5413611 Rhodopseudomonas palustris CGA009 2690611 NP_950129.1 CDS RPA4795 NC_005296.1 5413608 5413739 D hypothetical protein 5413608..5413739 Rhodopseudomonas palustris CGA009 2691131 NP_950130.1 CDS RPA4796 NC_005296.1 5413781 5414374 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ErfK/YbiS/YcfS/YnhG protein 5413781..5414374 Rhodopseudomonas palustris CGA009 2688831 NP_950131.1 CDS RPA4797 NC_005296.1 5414421 5415455 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; ABC transporter amino acid binding protein 5414421..5415455 Rhodopseudomonas palustris CGA009 2690844 NP_950132.1 CDS RPA4798 NC_005296.1 5415801 5416940 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl-CoA dehydrogenase complement(5415801..5416940) Rhodopseudomonas palustris CGA009 2693483 NP_950133.1 CDS RPA4799 NC_005296.1 5417107 5418291 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; acyl-CoA dehydrogenase complement(5417107..5418291) Rhodopseudomonas palustris CGA009 2693573 NP_950134.1 CDS RPA4800 NC_005296.1 5419057 5420268 R transporter complement(5419057..5420268) Rhodopseudomonas palustris CGA009 2693236 NP_950135.1 CDS RPA4801 NC_005296.1 5420357 5421604 R major facilitator superfamily permease complement(5420357..5421604) Rhodopseudomonas palustris CGA009 2693188 NP_950136.1 CDS RPA4802 NC_005296.1 5421680 5422411 R hypothetical protein complement(5421680..5422411) Rhodopseudomonas palustris CGA009 2693426 NP_950137.1 CDS RPA4803 NC_005296.1 5422839 5424950 D outer membrane hemin/siderophore receptor protein 5422839..5424950 Rhodopseudomonas palustris CGA009 2693429 NP_950138.1 CDS RPA4804 NC_005296.1 5425107 5425394 D hypothetical protein 5425107..5425394 Rhodopseudomonas palustris CGA009 2693323 NP_950139.1 CDS RPA4805 NC_005296.1 5425568 5425762 D hypothetical protein 5425568..5425762 Rhodopseudomonas palustris CGA009 2693298 NP_950140.1 CDS RPA4806 NC_005296.1 5425793 5427049 R hypothetical protein complement(5425793..5427049) Rhodopseudomonas palustris CGA009 2693182 NP_950141.1 CDS RPA4807 NC_005296.1 5427284 5428504 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched chain amino-acid ABC transporter substrate-binding protein 5427284..5428504 Rhodopseudomonas palustris CGA009 2693380 NP_950142.1 CDS RPA4808 NC_005296.1 5428619 5429905 R hexuronate transporter complement(5428619..5429905) Rhodopseudomonas palustris CGA009 2693481 NP_950143.1 CDS RPA4809 NC_005296.1 5430178 5430831 D ABC transporter ATP-binding protein 5430178..5430831 Rhodopseudomonas palustris CGA009 2693589 NP_950144.1 CDS RPA4810 NC_005296.1 5430828 5433293 D hypothetical protein 5430828..5433293 Rhodopseudomonas palustris CGA009 2693162 NP_950145.1 CDS RPA4811 NC_005296.1 5433283 5434368 D hypothetical protein 5433283..5434368 Rhodopseudomonas palustris CGA009 2693187 NP_950146.1 CDS RPA4812 NC_005296.1 5434435 5434827 D hypothetical protein 5434435..5434827 Rhodopseudomonas palustris CGA009 2693244 NP_950147.1 CDS RPA4813 NC_005296.1 5435015 5436208 R observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; branched chain amino acid ABC transporter periplasmic-binding protein complement(5435015..5436208) Rhodopseudomonas palustris CGA009 2693322 NP_950148.1 CDS RPA4814 NC_005296.1 5436294 5437979 R hypothetical protein complement(5436294..5437979) Rhodopseudomonas palustris CGA009 2693318 NP_950149.1 CDS htpG NC_005296.1 5438067 5439953 R molecular chaperone; heat shock protein 90 complement(5438067..5439953) Rhodopseudomonas palustris CGA009 2693213 NP_950150.1 CDS RPA4816 NC_005296.1 5440041 5441417 R periplasmic sensor signal transduction histidine kinase complement(5440041..5441417) Rhodopseudomonas palustris CGA009 2693414 NP_950151.1 CDS RPA4817 NC_005296.1 5441414 5442079 R two-component transcriptional regulator complement(5441414..5442079) Rhodopseudomonas palustris CGA009 2693603 NP_950152.1 CDS RPA4818 NC_005296.1 5442079 5442417 R hypothetical protein complement(5442079..5442417) Rhodopseudomonas palustris CGA009 2693594 NP_950153.1 CDS RPA4819 NC_005296.1 5442515 5442823 R hypothetical protein complement(5442515..5442823) Rhodopseudomonas palustris CGA009 2693547 NP_950154.1 CDS mtnA NC_005296.1 5443007 5444131 R isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase complement(5443007..5444131) Rhodopseudomonas palustris CGA009 2693390 NP_950155.1 CDS RPA4821 NC_005296.1 5444305 5445180 R Catalyzes the reversible phosphorolysis of 5'-deoxy-5'- methylthioadenosine (MTA) to adenine and 5-methylthio-D-ribose-1- phosphate; 5'-methylthioadenosine phosphorylase complement(5444305..5445180) Rhodopseudomonas palustris CGA009 2693361 NP_950156.1 CDS RPA4822 NC_005296.1 5445459 5446601 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; alcohol dehydrogenase 5445459..5446601 Rhodopseudomonas palustris CGA009 2693468 NP_950157.1 CDS RPA4823 NC_005296.1 5446767 5448317 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 5446767..5448317 Rhodopseudomonas palustris CGA009 2693464 NP_950158.1 CDS RPA4824 NC_005296.1 5448369 5448743 R hypothetical protein complement(5448369..5448743) Rhodopseudomonas palustris CGA009 2693450 NP_950159.1 CDS RPA4825 NC_005296.1 5448815 5449168 D MerR family transcriptional regulator 5448815..5449168 Rhodopseudomonas palustris CGA009 2693542 NP_950160.1 CDS recQ NC_005296.1 5449244 5451094 D DNA helicase 5449244..5451094 Rhodopseudomonas palustris CGA009 2693543 NP_950161.1 CDS RPA4827 NC_005296.1 5451162 5451389 D hypothetical protein 5451162..5451389 Rhodopseudomonas palustris CGA009 2693519 NP_950162.1 CDS RPA4828 NC_005296.1 5451413 5451691 R hypothetical protein complement(5451413..5451691) Rhodopseudomonas palustris CGA009 2693511 NP_950163.1 CDS caiC NC_005296.1 5451971 5453557 D observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; crotonobetaine/carnitine-CoA ligase 5451971..5453557 Rhodopseudomonas palustris CGA009 2693504 NP_950164.1 CDS RPA4830 NC_005296.1 5453665 5454777 R metal dependent phosphohydrolase domain-containing protein complement(5453665..5454777) Rhodopseudomonas palustris CGA009 2693503 NP_950165.1 CDS RPA4831 NC_005296.1 5454965 5455354 D hypothetical protein 5454965..5455354 Rhodopseudomonas palustris CGA009 2693494 NP_950166.1 CDS clcD NC_005296.1 5455410 5456081 D dienelactone hydrolase 5455410..5456081 Rhodopseudomonas palustris CGA009 2693477 NP_950167.1 CDS RPA4833 NC_005296.1 5456108 5456749 R polysaccharide export protein complement(5456108..5456749) Rhodopseudomonas palustris CGA009 2693442 NP_950168.1 CDS msrA2 NC_005296.1 5456885 5457541 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(5456885..5457541) Rhodopseudomonas palustris CGA009 2693439 NP_950169.1 CDS RPA4835 NC_005296.1 5457709 5458026 R hypothetical protein complement(5457709..5458026) Rhodopseudomonas palustris CGA009 2693441 NP_950170.1 CDS rpsT NC_005296.1 5458392 5458658 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 5458392..5458658 Rhodopseudomonas palustris CGA009 2693368 NP_950202.1 CDS repA NC_005297.1 410 1606 R replication protein complement(410..1606) Rhodopseudomonas palustris CGA009 2693687 NP_950203.1 CDS parA NC_005297.1 2092 2745 R partition protein complement(2092..2745) Rhodopseudomonas palustris CGA009 2693683 NP_950204.1 CDS endo NC_005297.1 2898 3968 R similar to plasmid encoded restriction endonuclease from Rhizobium leguminosarun VF39SM (Rochepeau et al., Mol. Gen. Genet. 256:387-396 (1997)); BsuBI-PstI family restriction endonuclease complement(2898..3968) Rhodopseudomonas palustris CGA009 2693684 NP_950205.1 CDS meth NC_005297.1 3965 5794 R 64% identity to plasmid encoded restriction methylase from Rhizobium leguminosarun VF39SM (Rochepeau et al., Mol. Gen. Genet. 256:387-396 (1997)); restriction methylase complement(3965..5794) Rhodopseudomonas palustris CGA009 2693685 NP_950206.1 CDS res NC_005297.1 5935 6492 R IPR006119 Resolvase, N-terminal, residues 2-137; IPR006120 Resolvase helix-turn-helix domain, residues 139-183, 43% identity to Q83SV1 DNA-invertase from Salmonella typhi; resolvase complement(5935..6492) Rhodopseudomonas palustris CGA009 2693686 NP_950207.1 CDS pRPA6 NC_005297.1 6692 7318 D 35% identity to Q9AGT5 homocitrate synthase from Rhizobium meliloti; hypothetical protein 6692..7318 Rhodopseudomonas palustris CGA009 2693681 NP_950208.1 CDS pRPA7 NC_005297.1 7452 8030 R hypothetical protein complement(7452..8030) Rhodopseudomonas palustris CGA009 2693682 RPA_RNA3 tRNA tRNA-Leu1 NC_005296.1 52242 52326 D tRNA-Leu 52242..52326 Rhodopseudomonas palustris CGA009 2690608 RPA_RNA41 tRNA tRNA-Ala2 NC_005296.1 66510 66585 R tRNA-Ala complement(66510..66585) Rhodopseudomonas palustris CGA009 2688837 RPA_RNA40 tRNA tRNA-Ser3 NC_005296.1 175721 175810 R tRNA-Ser complement(175721..175810) Rhodopseudomonas palustris CGA009 2689860 RPA_RNA4 tRNA tRNA-Thr2 NC_005296.1 284219 284294 D tRNA-Thr 284219..284294 Rhodopseudomonas palustris CGA009 2689257 RPA_RNA39 tRNA tRNA-Gly2 NC_005296.1 295291 295365 R tRNA-Gly complement(295291..295365) Rhodopseudomonas palustris CGA009 2689864 RPA_RNA5 tRNA tRNA-Glu1 NC_005296.1 399949 400023 D tRNA-Glu 399949..400023 Rhodopseudomonas palustris CGA009 2689229 RPA_RNA6 tRNA tRNA-Ala1 NC_005296.1 458356 458431 D tRNA-Ala 458356..458431 Rhodopseudomonas palustris CGA009 2691649 RPA_RNA38 tRNA tRNA-Arg5 NC_005296.1 526626 526702 R tRNA-Arg complement(526626..526702) Rhodopseudomonas palustris CGA009 2689574 RPA_RNA37 tRNA tRNA-Leu5 NC_005296.1 604599 604683 R tRNA-Leu complement(604599..604683) Rhodopseudomonas palustris CGA009 2689253 RPA_RNA7 tRNA tRNA-Arg1 NC_005296.1 702780 702856 D tRNA-Arg 702780..702856 Rhodopseudomonas palustris CGA009 2692403 RPA_RNA8 tRNA tRNA-Arg2 NC_005296.1 858392 858468 D tRNA-Arg 858392..858468 Rhodopseudomonas palustris CGA009 2691341 RPA_RNA9 tRNA tRNA-Val1 NC_005296.1 1009620 1009694 D tRNA-Val 1009620..1009694 Rhodopseudomonas palustris CGA009 2689009 RPA_RNA10 tRNA tRNA-Gln1 NC_005296.1 1061293 1061367 D tRNA-Gln 1061293..1061367 Rhodopseudomonas palustris CGA009 2690265 RPA_RNA11 tRNA tRNA-Pro1 NC_005296.1 1189709 1189785 D tRNA-Pro 1189709..1189785 Rhodopseudomonas palustris CGA009 2689080 RPA_RNA12 tRNA tRNA-Met1 NC_005296.1 1428260 1428336 D tRNA-Met 1428260..1428336 Rhodopseudomonas palustris CGA009 2693373 RPA_RNA36 tRNA tRNA-Val3 NC_005296.1 1802489 1802563 R tRNA-Val complement(1802489..1802563) Rhodopseudomonas palustris CGA009 2690720 RPA_RNA13 tRNA tRNA-Met2 NC_005296.1 1824830 1824905 D tRNA-Met 1824830..1824905 Rhodopseudomonas palustris CGA009 2692616 RPA_RNA14 tRNA tRNA-Met3 NC_005296.1 1884001 1884077 D tRNA-Met 1884001..1884077 Rhodopseudomonas palustris CGA009 2688743 RPA_RNA15 tRNA tRNA-Lys1 NC_005296.1 2309175 2309250 D tRNA-Lys 2309175..2309250 Rhodopseudomonas palustris CGA009 2692833 RPA_RNA35 tRNA tRNA-Ser2 NC_005296.1 2728479 2728568 R tRNA-Ser complement(2728479..2728568) Rhodopseudomonas palustris CGA009 2690934 RPA_RNA34 tRNA tRNA-Ser1 NC_005296.1 2744879 2744972 R tRNA-Ser complement(2744879..2744972) Rhodopseudomonas palustris CGA009 2689292 RPA_RNA33 tRNA tRNA-Glu2 NC_005296.1 2862480 2862554 R tRNA-Glu complement(2862480..2862554) Rhodopseudomonas palustris CGA009 2691282 RPA_RNA16 tRNA tRNA-Pro2 NC_005296.1 2866851 2866927 D tRNA-Pro 2866851..2866927 Rhodopseudomonas palustris CGA009 2689978 RPA_RNA32 tRNA tRNA-Arg4 NC_005296.1 2893816 2893892 R tRNA-Arg complement(2893816..2893892) Rhodopseudomonas palustris CGA009 2691156 RPA_RNA31 tRNA tRNA-Cys1 NC_005296.1 2929967 2930040 R tRNA-Cys complement(2929967..2930040) Rhodopseudomonas palustris CGA009 2690082 RPA_RNA30 tRNA tRNA-Asn1 NC_005296.1 2933792 2933866 R tRNA-Asn complement(2933792..2933866) Rhodopseudomonas palustris CGA009 2690160 RPA_RNA29 tRNA tRNA-Lys2 NC_005296.1 3018453 3018528 R tRNA-Lys complement(3018453..3018528) Rhodopseudomonas palustris CGA009 2690617 RPA_RNA17 tRNA tRNA-Pro3 NC_005296.1 3114233 3114310 D tRNA-Pro 3114233..3114310 Rhodopseudomonas palustris CGA009 2693310 RPA_RNA28 tRNA tRNA-Asp1 NC_005296.1 3338329 3338405 R tRNA-Asp complement(3338329..3338405) Rhodopseudomonas palustris CGA009 2688915 RPA_RNA18 tRNA tRNA-Val2 NC_005296.1 3345173 3345249 D tRNA-Val 3345173..3345249 Rhodopseudomonas palustris CGA009 2692020 RPA_RNA27 tRNA tRNA-Leu4 NC_005296.1 3356438 3356522 R tRNA-Leu complement(3356438..3356522) Rhodopseudomonas palustris CGA009 2690327 RPA_RNA26 tRNA tRNA-Leu3 NC_005296.1 3574656 3574740 R tRNA-Leu complement(3574656..3574740) Rhodopseudomonas palustris CGA009 2689322 RPA_RNA19 tRNA tRNA-Arg3 NC_005296.1 3591387 3591463 D tRNA-Arg 3591387..3591463 Rhodopseudomonas palustris CGA009 2693102 RPA_RNA25 tRNA tRNA-Trp1 NC_005296.1 3701564 3701639 R tRNA-Trp complement(3701564..3701639) Rhodopseudomonas palustris CGA009 2690212 RPA_RNA24 tRNA tRNA-Gly1 NC_005296.1 3729414 3729487 R tRNA-Gly complement(3729414..3729487) Rhodopseudomonas palustris CGA009 2691060 RPA_RNA23 tRNA tRNA-Tyr1 NC_005296.1 3807111 3807196 R tRNA-Tyr complement(3807111..3807196) Rhodopseudomonas palustris CGA009 2692716 RPA_RNA20 tRNA tRNA-Thr3 NC_005296.1 3809553 3809627 D tRNA-Thr 3809553..3809627 Rhodopseudomonas palustris CGA009 2692822 RPA_RNA22 tRNA tRNA-Leu2 NC_005296.1 3879766 3879854 R tRNA-Leu complement(3879766..3879854) Rhodopseudomonas palustris CGA009 2690593 RPA_RNA21 tRNA tRNA-Gln2 NC_005296.1 3934358 3934431 D tRNA-Gln 3934358..3934431 Rhodopseudomonas palustris CGA009 2692377 RPA_RNA1 tRNA tRNA-Undet1 NC_005296.1 4608449 4608523 D tRNA-OTHER 4608449..4608523 Rhodopseudomonas palustris CGA009 2689880 RPA_RNA49 tRNA tRNA-His1 NC_005296.1 4678879 4678955 R tRNA-His complement(4678879..4678955) Rhodopseudomonas palustris CGA009 2688844 RPA_RNA48 tRNA tRNA-Ala4 NC_005296.1 4995815 4995890 R tRNA-Ala complement(4995815..4995890) Rhodopseudomonas palustris CGA009 2691782 RPA_RNA47 tRNA tRNA-Ile2 NC_005296.1 4995924 4996000 R tRNA-Ile complement(4995924..4996000) Rhodopseudomonas palustris CGA009 2691788 RPA_RNA46 tRNA tRNA-Phe1 NC_005296.1 5107941 5108016 R tRNA-Phe complement(5107941..5108016) Rhodopseudomonas palustris CGA009 2691024 RPA_RNA2 tRNA tRNA-Thr1 NC_005296.1 5118650 5118724 D tRNA-Thr 5118650..5118724 Rhodopseudomonas palustris CGA009 2689064 RPA_RNA45 tRNA tRNA-Ala3 NC_005296.1 5249580 5249655 R tRNA-Ala complement(5249580..5249655) Rhodopseudomonas palustris CGA009 2689909 RPA_RNA44 tRNA tRNA-Ile1 NC_005296.1 5249689 5249765 R tRNA-Ile complement(5249689..5249765) Rhodopseudomonas palustris CGA009 2689966 RPA_RNA43 tRNA tRNA-Ser4 NC_005296.1 5252330 5252419 R tRNA-Ser complement(5252330..5252419) Rhodopseudomonas palustris CGA009 2690024 RPA_RNA42 tRNA tRNA-Gly3 NC_005296.1 5374719 5374792 R tRNA-Gly complement(5374719..5374792) Rhodopseudomonas palustris CGA009 2691923 RPA_RNA57 rRNA rrnB NC_005296.1 4991995 4998356 R RrnB complement(4991995..4998356) Rhodopseudomonas palustris CGA009 2692508 RPA_RNA50 rRNA rrna NC_005296.1 4992384 4992504 R 5S ribosomal RNA complement(4992384..4992504) Rhodopseudomonas palustris CGA009 2691117 RPA_RNA51 rRNA rrna NC_005296.1 4992581 4995470 R 23S ribosomal RNA complement(4992581..4995470) Rhodopseudomonas palustris CGA009 2691127 RPA_RNA52 rRNA rrna NC_005296.1 4996218 4997699 R 16S ribosomal RNA complement(4996218..4997699) Rhodopseudomonas palustris CGA009 2690886 RPA_RNA58 rRNA rrnA NC_005296.1 5246084 5252077 R 23S ribosomal RNA complement(5246084..5252077) Rhodopseudomonas palustris CGA009 2691993 RPA_RNA53 rRNA rrna NC_005296.1 5246149 5246269 R 5S ribosomal RNA complement(5246149..5246269) Rhodopseudomonas palustris CGA009 2691969 RPA_RNA54 rRNA rrna NC_005296.1 5246346 5249235 R 23S ribosomal RNA complement(5246346..5249235) Rhodopseudomonas palustris CGA009 2692573 RPA_RNA55 rRNA rrna NC_005296.1 5249983 5251464 R 16S ribosomal RNA complement(5249983..5251464) Rhodopseudomonas palustris CGA009 2690040